Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 242 of 402
Found at i:24128462 original size:26 final size:27
Alignment explanation
Indices: 24128425--24128483 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
24128415 CGTTAGTTGA
*
24128425 CTAAGACATACGGAGTTCATCCCCAGT
1 CTAAGACATACGGAGTCCATCCCCAGT
* *
24128452 CTAAG-CATACGGAGTCCATTCCTAGT
1 CTAAGACATACGGAGTCCATCCCCAGT
24128478 CTAAGA
1 CTAAGA
24128484 TCAGACCGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (27 bp):
CTAAGACATACGGAGTCCATCCCCAGT
Found at i:24128847 original size:26 final size:26
Alignment explanation
Indices: 24128800--24128849 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
24128790 GACTTAGGCA
*
24128800 TACGGAGTTCATCACCAGTCTAAGCT
1 TACGGAGTTCATCACCAATCTAAGCT
24128826 TACGGAGTTCATTC-CCAATCTAAG
1 TACGGAGTTCA-TCACCAATCTAAG
24128850 ATTGGATTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCACCAATCTAAGCT
Found at i:24129348 original size:26 final size:26
Alignment explanation
Indices: 24129298--24129350 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24129288 CTTGGCTTAG
* *
24129298 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24129324 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24129350 G
1 G
24129351 ATTTTGAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24129457 original size:13 final size:12
Alignment explanation
Indices: 24129420--24129457 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
24129410 CCCAGGGCAC
24129420 CATCGTC-AGAG
1 CATCGTCGAGAG
24129431 CATCGTCG-GAG
1 CATCGTCGAGAG
24129442 CATCGTCGAAGAG
1 CATCGTCG-AGAG
24129455 CAT
1 CAT
24129458 AACCGGCGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 18 0.75
13 6 0.25
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.18
Consensus pattern (12 bp):
CATCGTCGAGAG
Found at i:24130084 original size:26 final size:26
Alignment explanation
Indices: 24130032--24130084 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
24130022 GTTGACTTAG
* *
24130032 GCATACAGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCACAGTCTAA
* * *
24130058 GCATATAGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
24130084 G
1 G
24130085 ATCGAACCGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:24132281 original size:26 final size:26
Alignment explanation
Indices: 24132234--24132286 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
24132224 GTTGACTTAG
* * * *
24132234 GCATACGGAGTTGATCCCTAGTTTAA
1 GCATACGAAGTTCATCCATAGTCTAA
*
24132260 GCATACGAAGTTCATTCATAGTCTAA
1 GCATACGAAGTTCATCCATAGTCTAA
24132286 G
1 G
24132287 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATCCATAGTCTAA
Found at i:24132638 original size:26 final size:26
Alignment explanation
Indices: 24132602--24132654 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24132592 GTTGACTTAG
24132602 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24132628 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24132654 G
1 G
24132655 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24134746 original size:26 final size:26
Alignment explanation
Indices: 24134696--24134748 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24134686 CTGGGCTTAG
* *
24134696 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24134722 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24134748 G
1 G
24134749 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24135658 original size:26 final size:26
Alignment explanation
Indices: 24135628--24135680 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24135618 GTTGACTTAG
*
24135628 GCATACGGAGTTCA-TCACCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
24135654 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24135680 G
1 G
24135681 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:24136340 original size:26 final size:26
Alignment explanation
Indices: 24136304--24136356 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24136294 GTTGACTTAG
24136304 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24136330 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24136356 G
1 G
24136357 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24137031 original size:159 final size:159
Alignment explanation
Indices: 24136837--24137202 Score: 387
Period size: 158 Copynumber: 2.3 Consensus size: 159
24136827 CCCGTACACC
* * * * * ** *
24136837 CGTTTCATGGGTTGGCTTAGGCGTAAGGGGCTCATTCCATGTCTAAGCCCCAGTTC-AACTGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGAACGAACCGAGG
** * * * * **
24136901 GTTGTGGTAGCAGGATCGACAGCACGTAAAAGGGGACTGGGCCAATCCGTGGCTTGCGCATTATG
66 GTTACGGCAGCAGAATCGACAGCACGT-AAAGGGGACCGAGCCAATCCCCGGCTTGCGCATTATG
*
24136966 CCTCTTCGACCGGCTCAGCGCACGCACGCT
130 CCTCTTCGACCGGCTCAGCACACGCACGCT
* * * *
24136996 CGTTTCGTGGGTTGACTTATGCATAAGGAGTTCATTCC-TAGTCTAAG-ATCAGAACGGACCGAG
1 CGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAT-GTCTAAGCACCAGAACGAACCGAG
* * * * * *
24137059 GGTTACGGCAGCAGAATTGACAGCACGTAAGGGGGACCGAGTCGATCCCCGGCTTGTGCATTCTG
65 GGTTACGGCAGCAGAATCGACAGCACGTAAAGGGGACCGAGCCAATCCCCGGCTTGCGCATTATG
* * * *
24137124 CCTCTTCGACTGGTTGAGCACCCGCACGCT
130 CCTCTTCGACCGGCTCAGCACACGCACGCT
* * *
24137154 CGTTTAGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCA
1 CGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCA
24137203 TACGGAGCTC
Statistics
Matches: 167, Mismatches: 36, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
158 99 0.59
159 68 0.41
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (159 bp):
CGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCACCAGAACGAACCGAGG
GTTACGGCAGCAGAATCGACAGCACGTAAAGGGGACCGAGCCAATCCCCGGCTTGCGCATTATGC
CTCTTCGACCGGCTCAGCACACGCACGCT
Found at i:24137224 original size:26 final size:26
Alignment explanation
Indices: 24137174--24137226 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24137164 GTTGGCTTAG
* *
24137174 GCATACGGAGTTCATTCCACGTCTAA
1 GCATACGGAGCTCATTCCACATCTAA
24137200 GCATACGGAGCTCATTCC-CAATCTAA
1 GCATACGGAGCTCATTCCAC-ATCTAA
24137226 G
1 G
24137227 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCACATCTAA
Found at i:24138617 original size:26 final size:26
Alignment explanation
Indices: 24138581--24138633 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24138571 GTTGACTTAG
*
24138581 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24138607 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24138633 G
1 G
24138634 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24139086 original size:158 final size:158
Alignment explanation
Indices: 24138607--24139110 Score: 432
Period size: 158 Copynumber: 3.2 Consensus size: 158
24138597 CCCAGTGTAA
* * * * ** * * *
24138607 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGAACTGGAGGTTGCAACAGTAGGATCGA
1 GCATACGGAGTTCATTCCCATGTCTAAGCACCAG-TCGGACCGAAGGTTGTGATAGCAAGATCGA
* * * ** *
24138670 CAGCACGCAGAGGGGATCGGGTCGATCATCAGCTTGCGCATTCTGCCTCTCTAGCCGACTGAGCG
65 CAGCACGTAGAGGGGACCGGGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* *
24138735 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CCCACA-GCTCGTTTCGTGGGTTGGCTTAG
* * * * * * **
24138765 GCATAGGGAGCTCATT-CCATGTCTAAGCCCCAGTCGGACCGAAGGTTGTGGTAGCGAGACCGGT
1 GCATACGGAGTTCATTCCCATGTCTAAGCACCAGTCGGACCGAAGGTTGTGATAGCAAGATCGAC
** * * * * * * *
24138829 AGCACGTAGAGGGGGACCAAGTCGATCCTCAACTTGTGCATTATGCCTCTTCGGCCAGCTCAACA
66 AGCACGTAGA-GGGGACCGGGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGC-
* * * *
24138894 GCCGCAC-GCTCGTTTCGTAGATTGTCTTAT
129 GCC-CACAGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
24138924 GCATACGAAGTTCATTCCCA-G-C-ATAGGATCA-TACCGGACTGAGGGTTGTGATAGCAAGATC
1 GCATACGGAGTTCATTCCCATGTCTA-AGCACCAGT--CGGACCGAAGGTTGTGATAGCAAGATC
* * * *
24138985 GACAGCACGTAGAGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTACCTCTCCGGCTGGTTGAG
63 GACAGCACGTAGAGGGGACCGGGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
*
24139050 CGCCCACAAGCTCGTTTCATGGGTTGGCTTAG
128 CGCCCAC-AGCTCGTTTCGTGGGTTGGCTTAG
24139082 GCATACGGAGTTCATT-CCATGTCTAAGCA
1 GCATACGGAGTTCATTCCCATGTCTAAGCA
24139111 TACGGAGCTC
Statistics
Matches: 261, Mismatches: 71, Indels: 27
0.73 0.20 0.08
Matches are distributed among these distances:
156 3 0.01
157 11 0.04
158 127 0.49
159 111 0.43
160 7 0.03
161 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCATGTCTAAGCACCAGTCGGACCGAAGGTTGTGATAGCAAGATCGAC
AGCACGTAGAGGGGACCGGGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
CCACAGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24139748 original size:158 final size:158
Alignment explanation
Indices: 24139248--24139770 Score: 498
Period size: 158 Copynumber: 3.3 Consensus size: 158
24139238 CGCCCGTACA
* * * * * *
24139248 TCGTTTCGTGGGTTGACTTGGGCATACGGAGTTCATTCC-TAGTCTAAGATCATATCAGACCGTG
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGATTAGATCGGACCGAG
** * * * * * * *
24139312 GGTTGCAACTGTAGGATCGGTAGCATGTAGGGGGGATCGGG-CTGATCCTCGGCTTACGCATTCT
65 GGTTGCGGCAGTAGGATCGATAGCACGCAGGGGGGACCGGGTC-GATCCCCGGCTTGCGCATTCT
* *
24139376 GCCTCTCCGGTCGGCTGAGTGCCCGCACGC
129 GCCTCTCCGGCCGGCTGAGCGCCCGCACGC
* * * * * * ** *
24139406 CCGTTTCGTGGGTTGGCCTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTAG-TCGGACCGAA
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATTAGATCGGACCGAG
* * * * * ** * * *
24139470 GGTTGTGGCAGCAGGACCGACAGCACACAGAGGGGGACCGAATCGATCCCCGACTTGAGCATTAT
65 GGTTGCGGCAGTAGGATCGATAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCT
* ** * * *
24139535 GCATCTTTGGCCAGCTCAGCGCCCACACGC
129 GCCTCTCCGGCCGGCTGAGCGCCCGCACGC
* * * *
24139565 TTGTTTCGA-GGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAGATTAGACCGGACCGA
1 TCGTTTC-ATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATTAGATCGGACCGA
24139628 GGGTTGCGGCAGTAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCT
64 GGGTTGCGGCAGTAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCT
* * * *
24139693 ACCTCTCCGACCGGCTGAGCGCTCGCACTC
129 GCCTCTCCGGCCGGCTGAGCGCCCGCACGC
*
24139723 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
24139771 CATACGGAGC
Statistics
Matches: 279, Mismatches: 77, Indels: 18
0.75 0.21 0.05
Matches are distributed among these distances:
157 4 0.01
158 156 0.56
159 115 0.41
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATTAGATCGGACCGAGG
GTTGCGGCAGTAGGATCGATAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGC
CTCTCCGGCCGGCTGAGCGCCCGCACGC
Found at i:24139794 original size:26 final size:26
Alignment explanation
Indices: 24139744--24139796 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24139734 GTTGGCTTAG
* *
24139744 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24139770 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24139796 G
1 G
24139797 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24141212 original size:26 final size:26
Alignment explanation
Indices: 24141183--24141235 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24141173 GTTAACTTAG
24141183 GCATACGGAGTTCA-TCACCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
24141209 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24141235 G
1 G
24141236 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24141664 original size:159 final size:156
Alignment explanation
Indices: 24141209--24141711 Score: 437
Period size: 159 Copynumber: 3.2 Consensus size: 156
24141199 ACCAGTCTAA
*
24141209 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATTAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGATCGAGGGTTGTGGTAGCAGGATTAAC
* * * * * * *
24141273 AGCACGCAGGGGGGACCGGGTCGATCCCCAGCATGCGCATTCTACCTTTTCGTTCGGCTGAGCGC
65 AGCAC-AAGGGGGGAACGGGTCGATCCCCAGCTTGCACATTCTGCCTCTTCGATCGGCTGAGCG-
*
24141338 CCGCACG-TCCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCT-CATTTCGTGGGTTGGCTTAG
* * * ** * * * * *
24141367 GTATAGGGAGCTCATTCCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGTGAGACCAGT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGATCGAGGGTTGTGGTAG-CAG--GATT
* * * * * * * * * *
24141431 AACACGCAGAA--AGGGAACTGG-CTGATCCCCGGTTTGCATATTATGCTTCTTC-ATCCGACTC
62 AACA-GCACAAGGGGGGAACGGGTC-GATCCCCAGCTTGCACATTCTGCCTCTTCGAT-CGGCTG
* * *
24141492 AGCGCCTGTACGCTCATTTCGTGGGTTGACTTAT
124 AGCGCC-GCACGCTCATTTCGTGGGTTGGCTTAG
*
24141526 GCATACGGAGTTCATTCTCA-GTCTAAGATCAGACCAGATCGAGGGTTGTGGTAGCAGGATTAAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAGACCGGATCGAGGGTTGTGGTAGCAGGATTAAC
* * * *
24141590 AGCACATAGGGGGGGATCGGGTCGATCCTCAGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCG
65 AGCACA-A-GGGGGGAACGGGTCGATCCCCAGCTTGCACATTCTGCCTCTTCGATCGGCTGAGCG
* *
24141655 CTCGCACGCTCATTTCATGGTTTGGCTTAG
128 C-CGCACGCTCATTTCGTGGGTTGGCTTAG
**
24141685 GCATATAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
24141712 CATACGGAGC
Statistics
Matches: 261, Mismatches: 64, Indels: 39
0.72 0.18 0.11
Matches are distributed among these distances:
155 4 0.02
156 7 0.03
157 3 0.01
158 49 0.19
159 182 0.70
160 6 0.02
161 7 0.03
162 3 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGATCGAGGGTTGTGGTAGCAGGATTAACA
GCACAAGGGGGGAACGGGTCGATCCCCAGCTTGCACATTCTGCCTCTTCGATCGGCTGAGCGCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:24142806 original size:26 final size:26
Alignment explanation
Indices: 24142776--24142828 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24142766 GTTGACTTAG
*
24142776 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
24142802 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
24142828 G
1 G
24142829 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:24143490 original size:26 final size:26
Alignment explanation
Indices: 24143460--24143512 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24143450 GTTGACTTAG
*
24143460 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
24143486 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24143512 G
1 G
24143513 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24143860 original size:26 final size:27
Alignment explanation
Indices: 24143823--24143878 Score: 87
Period size: 26 Copynumber: 2.1 Consensus size: 27
24143813 CGTGGGTTGA
*
24143823 CTAAGGCATACGGAGTTCATCCCCAGT
1 CTAAGGCATACGGAGTTCATCCCCAAT
*
24143850 CTAA-GCATACGGAGTTCATTCCCAAT
1 CTAAGGCATACGGAGTTCATCCCCAAT
24143876 CTA
1 CTA
24143879 GGATCGGATC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (27 bp):
CTAAGGCATACGGAGTTCATCCCCAAT
Found at i:24143932 original size:368 final size:368
Alignment explanation
Indices: 24143118--24144064 Score: 955
Period size: 368 Copynumber: 2.6 Consensus size: 368
24143108 GTTGACTTAT
* * * * **
24143118 GCATACGGAGCTCATTCCCAGTCTAAGATTGGATCAAACCGAA-GGTTGTGGCAACAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGA-CTAAGGGTTGTGGCAGTAGGATCGAC
* ** * * * ** *
24143182 AGCACGCAGGAGGGATCGGTTCGATCCCTAGCTTGCACATTCTGCTTCTCCGGCCGACTGAGCGC
65 AGCACGCAGGGGGGATCGGGCCAATCCATAGCTTGCACATTCTGCCTCTCCAACCGACTGAGCAC
* * * * *
24143247 CCGCACGCTCATTTCGTGTGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCTGTCG
130 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCGAAGCCCCAGTCA
*** * **
24143312 GTTTGAGGGTTGTGGCAGTAGGACTGGCAGCGAGATTGACAGCATGCAGAGGGGGATCGGGCTGA
195 GACCGAGGGTTGTGGCAGTAGGACTGGCAGCGAGATCGACAGCACACAGAGGGGGATCGGGCTGA
* * * * ** *
24143377 TCCTCGGCTTGGGCATTATGCCTCTCCGACCGGCCTCTCTGGCCGGCTGAGCTCGTGCACGCTCG
260 TCCCCAGCTTGGACATTATGCCTCTCCGACCGGCCTCTCTGGCCGACTGAGCTCGCCCACGCTCA
*
24143442 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
325 TTTCATGGGTTGACTAAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * *
24143486 GCATACGAAGTTCATTCCCAGTCTAAGATCGGA-CTGGA-TCGAGGGTTGCGGCAGTAAGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACT-AAGGGTTGTGGCAGTAGGATCGA
* * * * ** * *
24143549 TAGTACGCGGGGGGGATCGGGCCAATCCATGGCTTGCGTATTCTGCCTCTCCAATCGGCTGAGCA
64 CAGCACGCAGGGGGGATCGGGCCAATCCATAGCTTGCACATTCTGCCTCTCCAACCGACTGAGCA
* * * *
24143614 CCTGCACGCTCGTTTCATGGGTTGGTTTAGGCATACAGAGTATATTCCACGTCGAAGCCCCAG-C
129 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCGAAGCCCCAGTC
* ** *
24143678 TAGACCGAGGGTTGTGGTAGTAGGACTGGCAGCGAGATCGGTAGCACATAGAGGGGGA-CTGGGC
194 -AGACCGAGGGTTGTGGCAGTAGGACTGGCAGCGAGATCGACAGCACACAGAGGGGGATC-GGGC
* * *
24143742 TGATCCCCAGCTTGTACATTATGCCTCTCCGATCGGCCTCT-TCGGCCGATTGAG-T-GCCCAAA
257 TGATCCCCAGCTTGGACATTATGCCTCTCCGACCGGCCTCTCT-GGCCGACTGAGCTCGCCC--A
*
24143804 CGCTCATTTCGTGGGTTGACTAAGGCATACGGAGTTCATCCCCAGTCTAA
319 CGCTCATTTCATGGGTTGACTAAGGCATACGGAGTTCATCCCCAGTCTAA
* * *
24143854 GCATACGGAGTTCATTCCCAATCTAGGATCGGATCAGACTAAGGGTTGTGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTAAGGGTTGTGGCAGTAGGATCGACA
* * * * * * * ** **
24143919 GCACGAAGGGGGGAACGAGCCCATCC-TCAGCCTACGCATTCTGCCTCTCCGGCCGACTGAGTGC
66 GCACGCAGGGGGGATCGGGCCAATCCAT-AGCTTGCACATTCTGCCTCTCCAACCGACTGAGCAC
* * * ** ** * * *
24143983 TCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCTCAGTT
130 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAG-TACATTCCACGTCGAAGCCCCAG-T
*
24144047 C-GATCGA-GGTTGTGGCAG
193 CAGACCGAGGGTTGTGGCAG
24144065 CGAGATCGAT
Statistics
Matches: 467, Mismatches: 98, Indels: 29
0.79 0.16 0.05
Matches are distributed among these distances:
366 2 0.00
367 17 0.04
368 444 0.95
369 3 0.01
370 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (368 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTAAGGGTTGTGGCAGTAGGATCGACA
GCACGCAGGGGGGATCGGGCCAATCCATAGCTTGCACATTCTGCCTCTCCAACCGACTGAGCACC
CGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCGAAGCCCCAGTCAG
ACCGAGGGTTGTGGCAGTAGGACTGGCAGCGAGATCGACAGCACACAGAGGGGGATCGGGCTGAT
CCCCAGCTTGGACATTATGCCTCTCCGACCGGCCTCTCTGGCCGACTGAGCTCGCCCACGCTCAT
TTCATGGGTTGACTAAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:24145116 original size:26 final size:26
Alignment explanation
Indices: 24145080--24145132 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24145070 GTTAACTTAG
*
24145080 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
24145106 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24145132 G
1 G
24145133 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24147045 original size:26 final size:26
Alignment explanation
Indices: 24147015--24147067 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24147005 GTTGACTTAG
24147015 GCATACGGAGTTCATCCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
* * *
24147041 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
24147067 G
1 G
24147068 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:24147941 original size:26 final size:26
Alignment explanation
Indices: 24147912--24147990 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
24147902 GTTGACTTAG
24147912 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
24147938 GCATATGGAGTTCATCCCCTGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
24147964 CCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24147990 G
1 G
24147991 ATCAGACCAG
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24148336 original size:26 final size:26
Alignment explanation
Indices: 24148306--24148358 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24148296 GTTGACTTAG
24148306 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
24148332 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24148358 G
1 G
24148359 ATCTGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24148804 original size:367 final size:364
Alignment explanation
Indices: 24147938--24149157 Score: 1310
Period size: 368 Copynumber: 3.3 Consensus size: 364
24147928 CCCAGTCTAA
* * * * * *
24147938 GCATATGGAGTTCATCCCCTGTGTAACCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGAT
1 GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGA-AT
* ** * *
24148003 CGAGGGTTGCGGTAGTAGGATCGACAGCATGCA-GAGGGGACCGAGCCGATCCCTGGCTTGCACA
65 CGAGGGTTGTGACAGCAGGATCGACAGCATGCAGGA-GGGACCGAGCCGATCCCTGGCTTGCGCA
* ** * *
24148067 TTCTGCCTCTCCAGCCAGCTGAGCGTCCGCACGTTCATTTTATGGGTTGGCTTAGGCATA-AGGA
129 TTCTGCCTCT-CAGCGA-CTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACA-GA
* * * * *
24148131 GTACATTCCACGTCTAAGCCCCAGTCGGATTGAGGGTTATGGCGGTAAGACCGGCAGCGGGATCG
191 GTACATTCCACGTCTAAGCCCCAGTCGGACTGAGGGTTATGGCAGTAGGACCGACAGTGGGATCG
* ** * * * **
24148196 ACAGCACGTAGAGGGGGATCAGGCTAATGCCCGACTTGTGCATTATGCCTCTTTGGCCGGCCTCT
256 GCAGCACACAGAGGGGGATCAGACTGAT-CCCGACTTGCGCATTATGCCTCTTTGATCGGCCTCT
* * ** **
24148261 CTGGT-TGACTGAGCGCCCACACACTTATTTCATGGGTTGACTTAG
320 CTGGTCAG-CTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAG
* * *
24148306 GCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCTGACTGGAT
1 GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GAAT
* * * * *
24148371 CGAGGGTTGTGACAACAGGATCGGCAGCACGCAAGG-GGGACCGAGCCAAT-CCTCAGCTTGCGC
65 CGAGGGTTGTGACAGCAGGATCGACAGCATGC-AGGAGGGACCGAGCCGATCCCT-GGCTTGCGC
** * *
24148434 ATTCTATCTCTCTAGTCGACTAAGCACCCGCACGCTCATTTCATGGGTTAGCTTAGGCATACAGA
128 ATTCTGCCTCTC-AG-CGACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGA
* *
24148499 GTACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTATGGCAGTAGGACTGACAGTGGGATCG
191 GTACATTCCACGTCTAAGCCCCAGTCGGACTGAGGGTTATGGCAGTAGGACCGACAGTGGGATCG
* * * * *
24148564 GTAGCGCACAGAGGGGGATCAGACTGATCCTCGACTTGCGTATTATGCCTCTCTGATC-ACCTCT
256 GCAGCACACAGAGGGGGATCAGACTGATCC-CGACTTGCGCATTATGCCTCTTTGATCGGCCTCT
* *
24148628 CTGGTCAGCTGAGCGCCTGTATGCTCGTTTCATGGGTTGACTTAG
320 CTGGTCAGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAG
* * *
24148673 GCATACGGAGTTTATCCCCAGTCTAAGCATACGGAGTTCATTCTCGGTCTAAGATCAGATCGAAT
1 GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAAT
* * *
24148738 CAAGGGTTGTGACAGCAGGATCGTCAGCATGCAGGAGGGACC-AGACCGATCCCTGGCTTACGCA
65 CGAGGGTTGTGACAGCAGGATCGACAGCATGCAGGAGGGACCGAG-CCGATCCCTGGCTTGCGCA
* * *
24148802 TTCTGCCTCTCCGACTGACTGAGCACCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC-GAA
129 TTCTGCCTCTCAG-C-GACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAG-A
* * * * * *
24148866 GTACATTCCACGTCTATGCCCCAGCCGGACTGAGGGTTGTGGCAGCAGGACCAATAGTGGGATCG
191 GTACATTCCACGTCTAAGCCCCAGTCGGACTGAGGGTTATGGCAGTAGGACCGACAGTGGGATCG
* * *
24148931 GCAGCACACAGAGGGGGATC-GAGCTGATCCCTGACTTGCACATTATACCT-TTTCGATCGGCCA
256 GCAGCACACAGAGGGGGATCAGA-CTGATCCC-GACTTGCGCATTATGCCTCTTT-GATCGGCCT
**** * * * * *
24148994 GAGAGGCCGGTTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAG
318 CTCTGGTCAGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAG
* * * * *
24149041 ACATACGGAGTTCATCCACAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAT
1 GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAAT
* * * * * *
24149106 CGAGGGTTG-CAGTAGCAGTATCGATAGCATGCAGGGGGGACCGAGCTGATCC
65 CGAGGGTTGTGA-CAGCAGGATCGACAGCATGCAGGAGGGACCGAGCCGATCC
24149158 TCGGCTTATG
Statistics
Matches: 711, Mismatches: 120, Indels: 42
0.81 0.14 0.05
Matches are distributed among these distances:
366 13 0.02
367 302 0.42
368 389 0.55
369 6 0.01
370 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (364 bp):
GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAATC
GAGGGTTGTGACAGCAGGATCGACAGCATGCAGGAGGGACCGAGCCGATCCCTGGCTTGCGCATT
CTGCCTCTCAGCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACA
TTCCACGTCTAAGCCCCAGTCGGACTGAGGGTTATGGCAGTAGGACCGACAGTGGGATCGGCAGC
ACACAGAGGGGGATCAGACTGATCCCGACTTGCGCATTATGCCTCTTTGATCGGCCTCTCTGGTC
AGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAG
Found at i:24149088 original size:26 final size:26
Alignment explanation
Indices: 24149042--24149093 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24149032 TTGACTTAGA
*
24149042 CATACGGAGTTCATCCACAGTTTAAG
1 CATACGGAGTTCATCCACAGTCTAAG
24149068 CATACGGAGTTCATTCC-CAGTCTAAG
1 CATACGGAGTTCA-TCCACAGTCTAAG
24149094 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCACAGTCTAAG
Found at i:24149285 original size:197 final size:198
Alignment explanation
Indices: 24149018--24149386 Score: 512
Period size: 197 Copynumber: 1.9 Consensus size: 198
24149008 GCACCCGCAT
* * *
24149018 GCTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATCCACAGTTTAAGCATACGGAGTTCATT
1 GCTCATTTCGTGGGTTGACTTAGACATACAGAGTTCATCCACAGTGTAAGCATACGGAGTTCATT
* * * * *
24149083 CCCAGTCTAAGA-TCGGATCGGATCGAGGGTTGCAGTAGCAGTATC-GATAGCATGCAG-GGGGG
66 CCCAGTCTAA-ACTCGGATCGGACCGAGGGTTGCAGTAGCAGGATCAG-CAGCACGCAGAGAGGG
* *
24149145 ACCGAG-CTGATCCTCGGCTTATGCATTTTACCTCTCCGATCGGCCTTTCCAATCAGCTAAGCGT
129 ACCGAGCCT-ATCCTCGGCTTACGCATTATACCTCTCCGATCGGCCTTTCCAATCAGCTAAGCGT
24149209 TCACAC
193 TCACAC
* * *
24149215 GCTCATTTCGTGGGTTGACTTAGCCATACAGAGTTCATCCCCAGTGTAAGCGTACGGAGTTCATT
1 GCTCATTTCGTGGGTTGACTTAGACATACAGAGTTCATCCACAGTGTAAGCATACGGAGTTCATT
**
24149280 CCCAGTCTAAACTCGGATCGGACCGAGGGTTGTGGTAGCAGGATCAGCAGCACGCAGAGAGGGAC
66 CCCAGTCTAAACTCGGATCGGACCGAGGGTTGCAGTAGCAGGATCAGCAGCACGCAGAGAGGGAC
* * * *
24149345 CGGGCCTATCCTCGGCTTGCGCATTATGCCTCTTCGATCGGC
131 CGAGCCTATCCTCGGCTTACGCATTATACCTCTCCGATCGGC
24149387 TCAACGCCCG
Statistics
Matches: 149, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
196 1 0.01
197 106 0.71
198 40 0.27
199 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.25
Consensus pattern (198 bp):
GCTCATTTCGTGGGTTGACTTAGACATACAGAGTTCATCCACAGTGTAAGCATACGGAGTTCATT
CCCAGTCTAAACTCGGATCGGACCGAGGGTTGCAGTAGCAGGATCAGCAGCACGCAGAGAGGGAC
CGAGCCTATCCTCGGCTTACGCATTATACCTCTCCGATCGGCCTTTCCAATCAGCTAAGCGTTCA
CAC
Found at i:24149606 original size:158 final size:160
Alignment explanation
Indices: 24149267--24149607 Score: 375
Period size: 158 Copynumber: 2.1 Consensus size: 160
24149257 AGTGTAAGCG
* * *
24149267 TACGGAGTTCATTCCCAGTCTAA-ACTCGGATCGGACCGAGGGTTGTGGTAGCAGGATCAGCAGC
1 TACGGAGTTCATTCCCAGTCTAAGACTCGGATCGGACCGAGGGTTGCGGCAGCAGGATCAACAGC
* * * * * *
24149331 ACGCAGAGAGGGACCGGGCCTATCCTCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAACGCCC
66 ACGCAGAGAGGGACCGAGCCGATCCTCGACTTACGCATTATGCCTCTCCGATCGACTCAACGCCC
* *
24149396 GCACACTCGTTTCGTGGGTTAACTTATGCA
131 GCACACTCATTTCGTGGGTTAACTTAGGCA
* *
24149426 TACGGAGTTCATTCCTAGTCTAAGA-TCGGATCGTACCGAGGGTTGCGGCAGCAGGAT-AACAGC
1 TACGGAGTTCATTCCCAGTCTAAGACTCGGATCGGACCGAGGGTTGCGGCAGCAGGATCAACAGC
* * * * * * * * *
24149489 ATGTAG-GAGGGGATCGAGTCGATCCTTGACTTACGCATTCTGTCTCTCCGATCGACTGAGCGCC
66 ACGCAGAGA-GGGACCGAGCCGATCCTCGACTTACGCATTATGCCTCTCCGATCGACTCAACGCC
* *** **
24149553 TGCTTGCTCATTTCGTGGGTTTCCTTAGGCA
130 CGCACACTCATTTCGTGGGTTAACTTAGGCA
* *
24149584 TACGGAGTTCATCCCCAATCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
24149608 CATACGGAGT
Statistics
Matches: 149, Mismatches: 31, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
157 2 0.01
158 95 0.64
159 51 0.34
160 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.26
Consensus pattern (160 bp):
TACGGAGTTCATTCCCAGTCTAAGACTCGGATCGGACCGAGGGTTGCGGCAGCAGGATCAACAGC
ACGCAGAGAGGGACCGAGCCGATCCTCGACTTACGCATTATGCCTCTCCGATCGACTCAACGCCC
GCACACTCATTTCGTGGGTTAACTTAGGCA
Found at i:24150241 original size:367 final size:365
Alignment explanation
Indices: 24149558--24150553 Score: 1115
Period size: 367 Copynumber: 2.7 Consensus size: 365
24149548 GCGCCTGCTT
* ** *
24149558 GCTCATTTCGTGGGTTTCCTTAGGCATACGGAGTTCATCCCCAA-TCTAAGCATACGGAGTTTAT
1 GCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCAT-CCCAAGTCTAAGCATACGGAGTTCAT
* * * * *
24149622 T-CCAGTTTAAGATTGGACCGGATCAAGGGTTGCGACAGTAGGATCGACAGCACATAGAGGGGAT
65 TCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGATAGTAGGATCGACAGCACGTAG-GGGGAT
** * * * * * * * * * *
24149686 CGAGGGGATCCTCAGATTGCACATTTTGCCT-TTTCGACCAGCTAAGTGCCCGCATGCTCGTTTC
129 CGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCT-GGCCA-CTGAGTG-CCGCACGCTCGTTTC
* * *
24149750 CTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGACCGAGAGTTGTGG
191 ATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGG
* * * *
24149815 TAGCAGGACCGGCAGCGAGATCGACAGCATGCAGAAGGGGACTGGATTGATCATCGACTTGCACA
256 CAGCAGGACCGGCAGCGAGATCGACAGAACGCAGAAGGGGACTGGACTGATCATCGACTTGCACA
* *** * * **
24149880 TTATGCCTCTTTGGTCGGCCTCTCCAGCCGATTGGGCGCCCGCAC
321 TTATACCTCTCCAGCCGGCCTCTCCAGCCGACTAAGCGCCCGCAC
* * *
24149925 GCTCGTTTCGTGGGTTAACTTAAGCTTACGGAGTTCATCTCAAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGGAGTTCATT
* * * *
24149990 CCCAGTCCAAGATTGGATCGGATCGAGGGTTGCGGTAGCAGGATCGATAGCACGTAGTGGGGATC
66 CCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGATAGTAGGATCGACAGCACGTAG-GGGGATC
** *
24150055 -AATCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCCGACTGAGAGTCCGCACGCTCGTTTCAT
130 GAGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCC-ACTGAGTG-CCGCACGCTCGTTTCAT
* *
24150119 GGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCA
193 GGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCA
* * * * * * * * **
24150184 GTAGGACCAGTCATCG-GATCGGCAGAACGTAGAGGGGGATTGGGCTGATTC-TCGACTTGCGTA
258 GCAGGACC-GGCAGCGAGATCGACAGAACGCAGAAGGGGACTGGACTGA-TCATCGACTTGCACA
* * * * *
24150247 TTATACCTCTCCAGCCGGCCTCTCTAGTCGGCTAAGCGCCCGTAT
321 TTATACCTCTCCAGCCGGCCTCTCCAGCCGACTAAGCGCCCGCAC
* * *
24150292 GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGGAGTTCATT
* * * *
24150357 CCCAGTCTAAGATTGGATCGGATTGAGGGTTGCGATAGTAGGATCGGCAGCACGCAGGGGGAACC
66 CCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGATAGTAGGATCGACAGCACGTAGGGGG-ATC
* * * * *
24150422 GAGCCAATCCCCGGCTTACGTATTCTGCCTCTCCGGCCTACTGAGTGCTCGCACGCCCATTTCAT
130 GAGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCC-ACTGAGTGC-CGCACGCTCGTTTCAT
* * *
24150487 GGGTTAGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGC
193 GGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGC
24150551 AGC
257 AGC
24150554 GGTACCGATA
Statistics
Matches: 526, Mismatches: 93, Indels: 19
0.82 0.15 0.03
Matches are distributed among these distances:
366 8 0.02
367 341 0.65
368 176 0.33
369 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (365 bp):
GCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGATAGTAGGATCGACAGCACGTAGGGGGATCG
AGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCCACTGAGTGCCGCACGCTCGTTTCATGGG
TTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCA
GGACCGGCAGCGAGATCGACAGAACGCAGAAGGGGACTGGACTGATCATCGACTTGCACATTATA
CCTCTCCAGCCGGCCTCTCCAGCCGACTAAGCGCCCGCAC
Found at i:24150352 original size:26 final size:26
Alignment explanation
Indices: 24150315--24150367 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24150305 GTTGACTTAG
24150315 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
24150341 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24150367 G
1 G
24150368 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24150683 original size:159 final size:158
Alignment explanation
Indices: 24150471--24150843 Score: 344
Period size: 157 Copynumber: 2.4 Consensus size: 158
24150461 ACTGAGTGCT
* * * * * * * *
24150471 CGCACGCCCATTTCATGGGTT-AGCTTAGGCATAGGGAGCTCAT-TCCATGTCTAAGCCCCA-AT
1 CGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATCCCCA-ATCTAAGCACCAGAT
* * * *
24150533 CGGACCGAGGGTTGTGGCAG-CGGTACCGATAGCACACGGAGGGGGACCGGGCCGATCCCTGGCT
64 CAGACCGAGGGTTGCGGCAGTAGG-ACCGATAG--CACGGAGGGGGACCGGGCCGATCCCCGGCT
* * * **
24150597 TACGCATTATGCCTCT-TCGACCGGTTCAGTGCC
126 CACGCATTATCCCTCTCT-GACCGGCTCAGCACC
* * * * * *
24150630 CGCACGCTTGTTTCGTGGGTTGATTTATGCATATGGAGTTCATTCCCAATCTAAG-ATCAGATCA
1 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCACCAGATCA
* * * ** * *
24150694 GACCGAGGGTTGCGGTAGTAGGATCGATAGCACGTAGGGGGATTGGGTCGATCCCCGGCTCGCGC
66 GACCGAGGGTTGCGGCAGTAGGACCGATAGCACGGAGGGGGACCGGGCCGATCCCCGGCTCACGC
* * *
24150759 ATTCTCCCTCTCTGATCGGCTGAGCACC
131 ATTATCCCTCTCTGACCGGCTCAGCACC
*
24150787 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCA
24150844 TAGGGGGTTC
Statistics
Matches: 171, Mismatches: 37, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
157 96 0.56
158 4 0.02
159 65 0.38
160 6 0.04
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCACCAGATCA
GACCGAGGGTTGCGGCAGTAGGACCGATAGCACGGAGGGGGACCGGGCCGATCCCCGGCTCACGC
ATTATCCCTCTCTGACCGGCTCAGCACC
Found at i:24150853 original size:26 final size:26
Alignment explanation
Indices: 24150815--24150867 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24150805 GTTGACTTAG
24150815 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * * *
24150841 GCATAGGGGGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24150867 G
1 G
24150868 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24151002 original size:184 final size:183
Alignment explanation
Indices: 24150658--24151026 Score: 465
Period size: 184 Copynumber: 2.0 Consensus size: 183
24150648 GTTGATTTAT
* * *
24150658 GCATATGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGGTAGTAGGATCGATA
1 GCATAGGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGGTAGTAGGATCAACA
* * * ** * *
24150723 GCACGTAGGGGGATTGGGTCGATCCCCGGCTCGCGCATTCTCCCTCTCTGATCGGCTGAGCACCC
66 GCACGTAGGGGGATCGGGCCAATCCCCCACTCGCCCATTCTCCCTCTCTGACCGGCTGAGCACCC
* * *
24150788 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCCAGTCTAA
131 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTACATTCCCC-GCCTAA
* * * * * *
24150841 GCATAGGGGGTTCATTCTCAGTCTAAGATCGGATCAGATCGAGGTTTGCGGCT-GTAGGATCAAC
1 GCATAGGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGG-TAGTAGGATCAAC
* * *
24150905 AGCACGTAGAGGGGATCGGGCCAATCCCCCACTTGCCCATTCTGCCTCT-TCGACCGGCTGAGCG
65 AGCACGTAG-GGGGATCGGGCCAATCCCCCACTCGCCCATTCTCCCTCTCT-GACCGGCTGAGCA
* *
24150969 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTACATTCCCCGCCTAA
128 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTACATTCCCCGCCTAA
24151025 GC
1 GC
24151027 CCCAGTCGGA
Statistics
Matches: 158, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
183 63 0.40
184 90 0.57
185 5 0.03
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (183 bp):
GCATAGGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGGTAGTAGGATCAACA
GCACGTAGGGGGATCGGGCCAATCCCCCACTCGCCCATTCTCCCTCTCTGACCGGCTGAGCACCC
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTACATTCCCCGCCTAA
Found at i:24151564 original size:183 final size:184
Alignment explanation
Indices: 24151121--24151565 Score: 508
Period size: 184 Copynumber: 2.4 Consensus size: 184
24151111 TTTCGATCGG
* * ** * *
24151121 CCTCTTCGGCTGGTTGAGTGCCCGCGCGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
1 CCTCTTCGGCTGGCTGAGTGCCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCAT
* * *
24151186 CCCTA-GTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATTGGACTGGATCGAGGGTTGCGATA
66 TCC-ACGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACTGGATCGAGGGATGCGATA
* ** * * * * *
24151250 GGAGGATCGGCAGCATGCAGGGGGGATCAGGCTGATCCCTGGGTTATGCATTCTG
130 GCAGGATCAACAGCACGCAGGGGGGATCAGGCTGATCCCCGGCTTACGCATTCTA
* * * * * *
24151305 TCTC-TCTAGTTAGCTGAGCGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCA
1 CCTCTTC-GGCTGGCTGAGTGCCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCA
* *
24151369 -TCCCCAGTCTAAGCATATGGAGTTCATTCTCC-GTCTAAGATCGGA-TCGGATCGAGGGATGCG
65 TTCCAC-GTCTAAGCATACGGAGTTCATT-TCCAGTCTAAGATCGGACT-GGATCGAGGGATGCG
* * *
24151431 GTAGCAGGATCAACAGCACGCA-GGGGGA-CTGGGTTGATCCCCGGCTTACGCATTCTA
127 ATAGCAGGATCAACAGCACGCAGGGGGGATC-AGGCTGATCCCCGGCTTACGCATTCTA
* * *
24151488 CCTCTTCGGCCGGCTGAGTGCCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGCGTACAT
1 CCTCTTCGGCTGGCTGAGTGCCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCAT
24151553 TCCACGTCTAAGC
66 TCCACGTCTAAGC
24151566 CCCAGCCAGA
Statistics
Matches: 215, Mismatches: 38, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
182 1 0.00
183 92 0.43
184 119 0.55
185 3 0.01
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.27
Consensus pattern (184 bp):
CCTCTTCGGCTGGCTGAGTGCCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTTCAT
TCCACGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACTGGATCGAGGGATGCGATAG
CAGGATCAACAGCACGCAGGGGGGATCAGGCTGATCCCCGGCTTACGCATTCTA
Found at i:24151853 original size:551 final size:540
Alignment explanation
Indices: 24150777--24151920 Score: 1323
Period size: 551 Copynumber: 2.1 Consensus size: 540
24150767 TCTCTGATCG
* * *
24150777 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* ** *
24150842 CATAGGGGGTTCATTCTCAGTCTAAGATCGGATCAGATCGAGGTTTGCGGCTGTAGGATCAACAG
66 CATAGGGAGTTCATTCTCAGTCTAAGATCGGATCAGATCGAGGGATGCGGCTGCAGGATCAACAG
* * *
24150907 CACGTAGAGGGGATCGGGCCAATCCCCCACTTGCCCATTCTGCCTCTTCGACCGGCTGAGCGCCC
131 CACGCAGAGGGGATCGGGCCAATCCCCCACTTACCCATTCTACCTCTTCGACCGGCTGAGCGCCC
* * * * *
24150972 GCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTACATTCCCCGCCTAAGCCCCAGTCGGA
196 GCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGCCTAAGCCCCAGCCAGA
* * * *
24151037 CCGAGGGTTATGGCAGTAGGACCGGTAGCTCACAGAGGGGGACCGGGCTGATCCCCGGCTTGCCC
261 CCGAGGGTTATGGCAGCAAGACCGGTAGCTCACAGAGGGGGACCGAGCTGATCCCCAGCTTGCCC
* * * * * *
24151102 ATTATGCCTTTTCGATCGGCCTCTTCGGCTGGTTGAGTGCCCGCGCGCTCATTTCGTGGGTTGAC
326 ATTATGCCTCTCCGATCGGCCTCTTCGGCTGGTTGAGTGCCCGCACGCTCATGTCATGGGTAGAC
* * * * *
24151167 TTAGGCATACAGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATTGGACT
391 TTAGGCATACAGAGTTCATCCCCAATCTAAGCACACGGAGTTCATTTCCAGTCTAAGATCGAACT
* * * * ** * * * **
24151232 GGATCGAGGGTTGCGATAGGAGGATCGGCAGCATGCAGGGGGGATCAGGCTGATCCCTGGGTTAT
456 GAACCGAGGGTTACGACAGGAGGATCGGCAGCACACAGGAGGGACCAGGCCGATCCCTGACTTAT
* *
24151297 GCATTCTGTCTCT-CTAGTTA
521 GCATTCTGCCTCTCCT-GGTA
*
24151317 GCTGAGCGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * *
24151382 CATATGGAGTTCATTCTCCGTCTAAGATCGGATCGGATCGAGGGATGCGG-TAGCAGGATCAACA
66 CATAGGGAGTTCATTCTCAGTCTAAGATCGGATCAGATCGAGGGATGCGGCT-GCAGGATCAACA
*** ** * * *
24151446 GCACGCAG-GGGGA-CTGGGTTGATCCCCGGCTTACGCATTCTACCTCTTCGGCCGGCTGAGTGC
130 GCACGCAGAGGGGATC-GGGCCAATCCCCCACTTACCCATTCTACCTCTTCGACCGGCTGAGCGC
* * *
24151509 CCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGCGTACATTCCACGTCTAAGCCCCAGCCA
194 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGCCTAAGCCCCAGCCA
* * *
24151574 GACCGAGGGTTGTGGCAGCAAGACCGACAGTAGGATTGGTAGCATGCAGAGGGGGATCGAGCTGA
259 GACCGAGGGTTATGGCAGCAAGACCG---GT---A--GCT--CA--CAGAGGGGGACCGAGCTGA
* * * *
24151639 TCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCCTTTTC-GATCGGTTGTGCT-CCCGCACGCT
312 TCCCCAGCTTGCCCATTATGCCTCTCCGATCGGCCTCTTCGGCT-GGTTGAG-TGCCCGCACGCT
* * *
24151702 CGTGTCATGGGTAGACTTAGGCATACGGAGTTCATCCCCAATCTTAGCACACGGAGTTCA-TTCC
375 CATGTCATGGGTAGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCACACGGAGTTCATTTCC
* * *
24151766 TAGTCTAAGATCGAA-TCGAACCGAGGGTTACGACAGTAGGATCGGCAGCACATAGGAGGGACCG
440 -AGTCTAAGATCGAACT-GAACCGAGGGTTACGACAGGAGGATCGGCAGCACACAGGAGGGACCA
* * *
24151830 GGCCGATCCTTGACTTGTGCATTCTGCCTCTCCTGGTG
503 GGCCGATCCCTGACTTATGCATTCTGCCTCTCCTGGTA
** * * * * * *
24151868 GCTGAGCGCCCATACACCCGTTTCATAGGTTGGCTTAGGTATAGGGAGCTCAT
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
24151921 TCCATCTCTG
Statistics
Matches: 502, Mismatches: 83, Indels: 27
0.82 0.14 0.04
Matches are distributed among these distances:
538 1 0.00
539 124 0.25
540 123 0.25
542 2 0.00
545 1 0.00
547 2 0.00
549 2 0.00
550 7 0.01
551 237 0.47
552 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (540 bp):
GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAG
CATAGGGAGTTCATTCTCAGTCTAAGATCGGATCAGATCGAGGGATGCGGCTGCAGGATCAACAG
CACGCAGAGGGGATCGGGCCAATCCCCCACTTACCCATTCTACCTCTTCGACCGGCTGAGCGCCC
GCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGCCTAAGCCCCAGCCAGA
CCGAGGGTTATGGCAGCAAGACCGGTAGCTCACAGAGGGGGACCGAGCTGATCCCCAGCTTGCCC
ATTATGCCTCTCCGATCGGCCTCTTCGGCTGGTTGAGTGCCCGCACGCTCATGTCATGGGTAGAC
TTAGGCATACAGAGTTCATCCCCAATCTAAGCACACGGAGTTCATTTCCAGTCTAAGATCGAACT
GAACCGAGGGTTACGACAGGAGGATCGGCAGCACACAGGAGGGACCAGGCCGATCCCTGACTTAT
GCATTCTGCCTCTCCTGGTA
Found at i:24152710 original size:26 final size:26
Alignment explanation
Indices: 24152672--24152727 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
24152662 TGGGTTGGCT
24152672 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
24152698 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
24152724 TAAG
1 TAAG
24152728 ATCAGATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:24152885 original size:183 final size:182
Alignment explanation
Indices: 24152380--24152885 Score: 579
Period size: 184 Copynumber: 2.7 Consensus size: 182
24152370 GTAGTAGGAC
* * * * *
24152380 CGGTAGCAGGATCGACAGCTCACAGAGAGGGATCGGGTTGATCCACGGCTTGCCCATTATGCCTC
1 CGGTAGCAGGATCGACAGCACACAG-G-GGGATCGGGTTGATCCTCGGCTTACGCATTCTGCCTC
* * * * ** *
24152445 TCCGACC-AGTTGAGCCCCCGTGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC
64 TCCGGCCGA-CTGAGCGCCCGTACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATCCC
* * *
24152509 TAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATTAGATCGGATCGAGGGTTA
128 -AGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAAGGATA
* * *** * * * * *
24152565 CGGTAGTAGGATCGACAGCACGCAAGGGGGATCGGACCGACTCTTTGG-TTATGGATTCTGTCTC
1 CGGTAGCAGGATCGACAGCACAC-AGGGGGATCGGGTTGA-TCCTCGGCTTACGCATTCTGCCTC
* *
24152629 TCCGGCCGACTGAGCGCCCGTACACTCGTTTTATGGGTTGGCTTAAGCATACGGAGTTCATCCCC
64 TCCGGCCGACTGAGCGCCCGTACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCAT-CCC
* *
24152694 AGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAAGGATG
128 AGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAAGGATA
* *
24152749 CGGTAGCAGGATC-AGTAGCACACAGGGGGATCGGGTTGATCCTCGGCTTACGTATTCTGCCTCT
1 CGGTAGCAGGATCGA-CAGCACACAGGGGGATCGGGTTGATCCTCGGCTTACGCATTCTGCCTCT
* * * *
24152813 CCGGCCGACTGAGTGCCCGTACGCTCATTTTATGGGTTGGCTTAGGCATACAGAGTACATTCCAC
65 CCGGCCGACTGAGCGCCCGTACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCA-TCC-C
24152878 A-TCTAAGC
128 AGTCTAAGC
24152886 CGCAGTCGGA
Statistics
Matches: 267, Mismatches: 46, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
182 5 0.02
183 90 0.34
184 141 0.53
185 29 0.11
186 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (182 bp):
CGGTAGCAGGATCGACAGCACACAGGGGGATCGGGTTGATCCTCGGCTTACGCATTCTGCCTCTC
CGGCCGACTGAGCGCCCGTACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATCCCAGT
CTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAAGGATA
Found at i:24153253 original size:551 final size:536
Alignment explanation
Indices: 24152101--24153253 Score: 1135
Period size: 551 Copynumber: 2.1 Consensus size: 536
24152091 CTCTGGTCAG
* * * * *
24152101 CTGAGCGCCCG-CGCGCTCGTTTCATGGGTTGACTTAGGCATACGAAG-TGCATCCCCAGTCTAA
1 CTGAGCGCCCGACAC-C-CGTTTCATGGGTTGGCTTAAGCATACGGAGCT-CATCCCCACTCTAA
* * ** * * * * *
24152164 GCATACGGGGTTCATTCCCAGTCTAAGATTGGATCGAATCGAGGGTTGCGGCTA-TATGATC-GA
63 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAAGGATGCGG-TAGCAGGATCAG-
* * * * * *** ** *
24152227 CAGCACGCAGGGGGGACCGAGCTGATCC-CCTATTGTGCATTCTGCCTCTCCGGTCCGCTGAGCG
126 TAGCACACA-GGGGGATCGGGTTGATCCTCGGCTTACGTATTCTGCCTCTCCGGTCCGCTGAGCG
* * * *
24152291 CATGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATAGAGTACATTCCACACCAAGCCCCACCCA
190 CACGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACACCAAGCCCCACCCA
* * ** *
24152356 GACCGAGGGTTGTGGTAGTAGGACCGGTAGCAGGATCGACAGCTCACAGAGAGGGATCGGGTTGA
255 GACCGAGGGTTGTGGCAGCAGGACCGACAGCAGGATCGACAGCTCACAGAGAGGGATCGGGCTGA
* ** *
24152421 TCCACGGCTTGCCCATTATGCCTCTCCGACCAGTTGAGCCCCCGTGCGCTCGTTTCGTGGGTTGA
320 TCCACAGCTTGCCCATTATGCCTCTCCGACCAGTTGAGCCCCCGCACGCTCATTTCGTGGGTTGA
* * * * * *
24152486 CTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATTAGAT
385 CTTAGGCATACAGAGTTCATCCCTAATCTAAGCACACAGAGTTCACTCCCAGTCTAAGATCAGAT
* * * * **
24152551 CGGATCGAGGGTTACGGTAGTAGGATCGACAGCACGCAAGGGGGATCGGACCGACTCTTTGGTTA
450 CGGATCGAGGGTTACGGCAGTAGGATCGACAGCACACAAGGGGGACCGGACCGACTCCTTGACTA
* * ***
24152616 TGGATTCTGTCTCTCCGGCCGA
515 TGCATTCTGCCTCTCCAAACGA
* * * *
24152638 CTGAGCGCCCGTACACTCGTTTTATGGGTTGGCTTAAGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCG-ACACCCGTTTCATGGGTTGGCTTAAGCATACGGAGCTCATCCCCACTCTAAGC
24152703 ATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAAGGATGCGGTAGCAGGATCAGTAGC
65 ATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAAGGATGCGGTAGCAGGATCAGTAGC
* *
24152768 ACACAGGGGGATCGGGTTGATCCTCGGCTTACGTATTCTGCCTCTCCGG-CCGACTGAGTGCCCG
130 ACACAGGGGGATCGGGTTGATCCTCGGCTTACGTATTCTGCCTCTCCGGTCCG-CTGAGCGCACG
* * * * ** *
24152832 TACGCTCATTTTATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCGCAGTCGGAC
194 CACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACA-CCAAGCCCCACCCAGAC
** *
24152897 CGAGGGTTGTGGCAGCAGGACCGACAGTGGGATCGACAGCAT-ACAGAGTGGGATCGGGCTGATC
258 CGAGGGTTGTGGCAGCAGGACCGACAGCAGGATCGACAGC-TCACAGAGAGGGATCGGGCTGATC
* * * *
24152961 C-CTAGCTTGCGCATTATGCGTCTCCGACCGACCTTTTCTGTCGACTGAGCTCTCGCACGCTCAT
322 CAC-AGCTTGCCCATTATGCCTCTCCGACC-A--------GT----TGAGCCCCCGCACGCTCAT
* *
24153025 TTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCTAATCTCAGCACACGGAGTTCACTCCCAGT
373 TTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCTAATCTAAGCACACAGAGTTCACTCCCAGT
* * * * * * *
24153090 CTAAGATCGGATCGGATCGAGGGTTGCGGCAGTAGGATC-AGCAGTATACAGGGGGGACCGGGCT
438 CTAAGATCAGATCGGATCGAGGGTTACGGCAGTAGGATCGA-CAGCACACAAGGGGGACCGGACC
* *
24153154 GA-TCCTTGACT-TGCACATTCTGCCTCTCCAAAGGG
502 GACTCCTTGACTATG--CATTCTGCCTCTCCAAACGA
* * * *
24153189 CTGAGCGCCC-ACACGCCAGTTTCATGGGTTGGCTTAGGTATAGGGAGCTCAT-TCCATCTCTAA
1 CTGAGCGCCCGACAC-CC-GTTTCATGGGTTGGCTTAAGCATACGGAGCTCATCCCCA-CTCTAA
24153252 GC
63 GC
24153254 CCCAACCAGA
Statistics
Matches: 496, Mismatches: 91, Indels: 44
0.79 0.14 0.07
Matches are distributed among these distances:
536 20 0.04
537 177 0.36
538 92 0.19
539 4 0.01
547 2 0.00
549 6 0.01
550 11 0.02
551 184 0.37
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (536 bp):
CTGAGCGCCCGACACCCGTTTCATGGGTTGGCTTAAGCATACGGAGCTCATCCCCACTCTAAGCA
TATGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAAGGATGCGGTAGCAGGATCAGTAGCA
CACAGGGGGATCGGGTTGATCCTCGGCTTACGTATTCTGCCTCTCCGGTCCGCTGAGCGCACGCA
CGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACACCAAGCCCCACCCAGACCGA
GGGTTGTGGCAGCAGGACCGACAGCAGGATCGACAGCTCACAGAGAGGGATCGGGCTGATCCACA
GCTTGCCCATTATGCCTCTCCGACCAGTTGAGCCCCCGCACGCTCATTTCGTGGGTTGACTTAGG
CATACAGAGTTCATCCCTAATCTAAGCACACAGAGTTCACTCCCAGTCTAAGATCAGATCGGATC
GAGGGTTACGGCAGTAGGATCGACAGCACACAAGGGGGACCGGACCGACTCCTTGACTATGCATT
CTGCCTCTCCAAACGA
Found at i:24153358 original size:107 final size:107
Alignment explanation
Indices: 24153169--24153382 Score: 281
Period size: 107 Copynumber: 2.0 Consensus size: 107
24153159 TTGACTTGCA
* * * *
24153169 CATTCTGCCTCTCCAAAGGGCTGAGCGCCCACACGCCAGTTTCATGGGTTGGCTTAGGTATAGGG
1 CATTCTGCCTCTCCAAACGGCTGAGCACCCACACGCCAGTTTCATGGGTTGGCTTAGGCATACGG
24153234 AGCTCATTCCATCTCTAAGCCCCAACCAG-ACCGAGGGTTGTG
66 AGCTCATTCCATCTCTAAGCCCCAACC-GTACCGAGGGTTGTG
** * *
24153276 CATTCTGCCTCTCCAGTCGGCTGAGCACCCGCACGCTC-GTTTCTTGGGTTGGCTTAGGCATACG
1 CATTCTGCCTCTCCAAACGGCTGAGCACCCACACGC-CAGTTTCATGGGTTGGCTTAGGCATACG
* * *
24153340 GAG-TACATTCCATGTCTAAGCCCCAGCCGTATCGAGGGTTGTG
65 GAGCT-CATTCCATCTCTAAGCCCCAACCGTACCGAGGGTTGTG
24153383 GTAATAGGAC
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
106 2 0.02
107 90 0.97
108 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.27, T:0.25
Consensus pattern (107 bp):
CATTCTGCCTCTCCAAACGGCTGAGCACCCACACGCCAGTTTCATGGGTTGGCTTAGGCATACGG
AGCTCATTCCATCTCTAAGCCCCAACCGTACCGAGGGTTGTG
Found at i:24153694 original size:475 final size:475
Alignment explanation
Indices: 24152802--24153750 Score: 1090
Period size: 475 Copynumber: 2.0 Consensus size: 475
24152792 CGGCTTACGT
* ** *
24152802 ATTCTGCCTCTCCGGCCGACTGAGTGCCCGTACGCTCATTTTATGGGTTGGCTTAGGCATACAGA
1 ATTCTGCCTCTCCAGCCGACTGAGCACCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACAGA
* * * *
24152867 GTACATTCCACATCTAAGCCGCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGACAGTGGGATCG
66 GTACATTCCACATCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACAGGACCGACAGCGGGATCG
* * * * *
24152932 ACAGCATACAGAGTGGGATCGGGCTGATCCCTAGCTTGCGCATTATGCGTCTCCGACCGACCTTT
131 ACAGCATACAGAGGGGGACCGGGCTGATCCCTAGCTTACGCATTATACCTCTCCGACCGACCTTT
* ** * *
24152997 TCTGTCGACTGAGCTCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCTA
196 CCAATCGACTGAGCTCTCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA
* * * * *
24153062 ATCTCAGCACACGGAGTTCACTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGTAGGA
261 ATCTAAGCACACAGAGTTCACTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGGCAATAGGA
* * * * *
24153127 TCAGCAGTATACAGGGGGGACCGGGCTGATCCTTGACTTGCACATTCTGCCTCTCCAAAGGGCTG
326 TCAGCAGCACACAGGGGGGACCGGGCTGATCCTCGACTTGCACATTCTACCTCTCCAAACGGCTG
* * *
24153192 AGCGCCCACACGCCAGTTTCATGGGTTGGCTTAGGTATAGGGAGCT-CATTCCATC-TCTAAGCC
391 AGCACCCACACGCCAGTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCA-CGTCTAAGCC
24153255 CCAACCAGACCGAGGGTTGTGC
454 CCAACCAGACCGAGGGTTGTGC
* * * *
24153277 ATTCTGCCTCTCCAGTCGGCTGAGCACCCGCACGCTCGTTTCT-TGGGTTGGCTTAGGCATACGG
1 ATTCTGCCTCTCCAGCCGACTGAGCACCCGCACGCTCATTT-TATGGGTTGGCTTAGGCATACAG
** * * * * *
24153341 AGTACATTCCATGTCTAAGCCCCAGCCGTATCGAGGGTTGTGGTAATAGGACCGGCAGCGGGATC
65 AGTACATTCCACATCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACAGGACCGACAGCGGGATC
* * * * *
24153406 -AGCAGCATGCAGAGGGGGACCGGGCTGAT-CCTTGACTTACGCATTATACCTCTTCGACTG-GC
130 GA-CAGCATACAGAGGGGGACCGGGCTGATCCCTAG-CTTACGCATTATACCTCTCCGACCGACC
** * * **
24153468 TTCTCCAATCGGTTGTG-TGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCAT
193 TT-TCCAATCGACTGAGCT-CTCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT
* * * * *
24153532 CCCCAGTCTAAGCATACAGAGTTCATTCCCATTCTAAGATCAGA-CTGGATCAAGGGTTGCGGTA
256 CCCCAATCTAAGCACACAGAGTTCACTCCCAGTCTAAGATCAGATC-GGATCAAGGGTTGCGGCA
** * * ** *
24153596 ATAGGATC-GACAGCACGTAGGGGGGACCGGGTTGATCCTCGGCTTGTGCATTCTACCTCTCCGA
320 ATAGGATCAG-CAGCACACAGGGGGGACCGGGCTGATCCTCGACTTGCACATTCTACCTCTCCAA
* * *
24153660 TCGGCTGAGCACCCATACGCTCA-TTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTC
384 ACGGCTGAGCACCCACACGC-CAGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTC
** * *
24153724 TAAGCCCCAGTCGGATCGAGGGTTGTG
448 TAAGCCCCAACCAGACCGAGGGTTGTG
24153751 GCAGCAGGAC
Statistics
Matches: 392, Mismatches: 72, Indels: 20
0.81 0.15 0.04
Matches are distributed among these distances:
474 13 0.03
475 376 0.96
476 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (475 bp):
ATTCTGCCTCTCCAGCCGACTGAGCACCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACAGA
GTACATTCCACATCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACAGGACCGACAGCGGGATCG
ACAGCATACAGAGGGGGACCGGGCTGATCCCTAGCTTACGCATTATACCTCTCCGACCGACCTTT
CCAATCGACTGAGCTCTCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA
ATCTAAGCACACAGAGTTCACTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGGCAATAGGA
TCAGCAGCACACAGGGGGGACCGGGCTGATCCTCGACTTGCACATTCTACCTCTCCAAACGGCTG
AGCACCCACACGCCAGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCC
AACCAGACCGAGGGTTGTGC
Found at i:24154316 original size:157 final size:156
Alignment explanation
Indices: 24153805--24154372 Score: 541
Period size: 158 Copynumber: 3.6 Consensus size: 156
24153795 GGGCTGATCT
* * * * * * *
24153805 CCGGCTTGCGTATTATGCCTCTTCGGTAGGCTGAGTGCCTGCACGCTCATTTCATGGGTTGACTT
1 CCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
* * * * *
24153870 AGGCATACGGAGTGCATCCCCA-ATCTAAGATCGAACTGGATCGAGGGTTGCGGCAGCAGGATCG
66 AGGCATACGGAGTTCAT-TCCATGTCTAAGATCG-ACTGGATCGAGGGTTGTGGCAGCAGGATTG
* * *
24153934 ACAGCATGCAGGGGGGATCGAACC-AATCC
129 ACAGCACGTAGGGGGGATCG-GCCGAA-CC
* * * * * ** *
24153963 CCGGCTTGCGCATTCTGCGTCTCTGGTCGACTGAGCACCCGCACGCCCGTTTCGGGGGTTGGCTT
1 CCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
* * ** * ** ** ** * *
24154028 AGGCATAGGGAGGTCATTCCATGTCTAAGCCCCAGCCAGATCGAGCATTGTGGCAGTGGGACTGG
66 AGGCATACGGAGTTCATTCCATGTCTAAGATCGA-CTGGATCGAGGGTTGTGGCAGCAGGATTGA
* * *
24154093 CAGCACATAGAGGGGGACCAGGCCGATCC
130 CAGCACGTAG-GGGGGATC-GGCCGAACC
* * * * * *
24154122 CCGGCTTACGCATTATGCCTCTTCGATCGGCTCAGCGCCCGCACGCTCGTTTCATAGGTTGACTT
1 CCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
* * * *
24154187 ATGCGTACGGAGTTCATTCCCA-GTCTAAGATCGATTGGA-CTTAGGGTTGTGGCAGCAGGATTG
66 AGGCATACGGAGTTCATT-CCATGTCTAAGATCGACTGGATC-GAGGGTTGTGGCAGCAGGATTG
*
24154250 ACAGCACGTAGGGGGGATCGGCTCGAAAC
129 ACAGCACGTAGGGGGGATCGGC-CGAACC
* * *
24154279 CAGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTT
1 CCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
24154344 AGGCATACGGAGTTCATTCCATGTCTAAG
66 AGGCATACGGAGTTCATTCCATGTCTAAG
24154373 CATACAGAGC
Statistics
Matches: 316, Mismatches: 85, Indels: 19
0.75 0.20 0.05
Matches are distributed among these distances:
156 6 0.02
157 95 0.30
158 125 0.40
159 85 0.27
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (156 bp):
CCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
AGGCATACGGAGTTCATTCCATGTCTAAGATCGACTGGATCGAGGGTTGTGGCAGCAGGATTGAC
AGCACGTAGGGGGGATCGGCCGAACC
Found at i:24155440 original size:26 final size:26
Alignment explanation
Indices: 24155410--24155462 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24155400 GTTGACTTGG
24155410 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
24155436 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24155462 G
1 G
24155463 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24156455 original size:368 final size:367
Alignment explanation
Indices: 24155753--24156675 Score: 930
Period size: 368 Copynumber: 2.5 Consensus size: 367
24155743 GTTGACTTAT
* * * * * ** * * *
24155753 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCT-AGGGTTGTAGCAACAGGATCGAC
1 GCATATGAAGTTCATTCCCAGTCTAAGATCAGATC-GAACTGAAGGTTACAACAGCAAGATCGAC
* * * * * * * ** * * *
24155817 AGCATGCAGGGGGGTCCAAGTCGATCCTCAGCTTGTGCCTTCTACCTCTCCGATCGGTTGAGCGA
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCATACGCATTCTACCTCTCCGACCGATTGAGC-A
* *
24155882 -CAGCACGCTCGTTTCGTGGGTTGG-TTAAGCATACGAAGTACATTCCATGTTTAAGCCCCAACC
129 CCAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-AGTACATTCCATGTCTAAGCCCCAACC
* ** *
24155945 GGATTGAGGGTTATGACAGCAGGACTGGCAGCGGGATCGGTAGCACACAAAGGCGGATCGGGCTG
193 GGATCGAGGGTTATGACAGCAGGACTGGCAGCGGGATCGACAGCACACAAAGGCGGACCGGGCTG
* * * * *
24156010 ATCCCCGACTTACGCATTATGCCTCTTCGACCCGCCTCTTCGGTCGACTGAGTGCCTGCACACTC
258 ATCCCAGACTTACGCATTATGCCTCTTCGACCCGCCTCTCCGGTCGACTAAGCGCCCGCACACTC
* * *
24156075 GTTTCGTGGGTTGACTTAGGCAT-CTGGAGTTCATCCCTAGTCTAA
323 ATTTCATGGGTTGACTTAGGCATAC-AGAGTTCATCCCTAGTCTAA
* * * * * **
24156120 GCATATGAAGTTCATTCCCAGTCTAAGATCGGACTGGATC-GAGGGTTACAACAGTAAGATCGGT
1 GCATATGAAGTTCATTCCCAGTCTAAGATCAGA-TCGAACTGAAGGTTACAACAGCAAGATCGAC
* * * * * **
24156184 AGCACGCAGGTGGGATCGGGCTGATCCCTGGC-TTGGACATTCTACCTCTCCGACCGATTGAGCA
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCATACG-CATTCTACCTCTCCGACCGATTGAGCA
* * * **
24156248 CCTGTACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTAAGCCCCAGTC
129 CCAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTACATTCCATGTCTAAGCCCCAACC
* * * * * *
24156313 GGATCGAGGGTTATGGCAGCAGGACTGGTAGTGGGATCGACAGCACACAGAGGGGGACCGGGTTG
193 GGATCGAGGGTTATGACAGCAGGACTGGCAGCGGGATCGACAGCACACAAAGGCGGACCGGGCTG
** * * ** * * *
24156378 ATCCTCAG-CTTGTGCATTATGCCTCTTTGGCTGGCCTCTCCGG-CTGGCTAAGCGCCCGCGCGC
258 ATCC-CAGACTTACGCATTATGCCTCTTCGACCCGCCTCTCCGGTC-GACTAAGCGCCCGCACAC
24156441 TCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAA
321 TCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAA
* **** *
24156488 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAAGGTTGTGGCAGCAGGATCGACA
1 GCATATGAAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAAGGTTACAACAGCAAGATCGACA
* *
24156553 GCACGCAGGGGGGACCGAGCCGATCCCCGGCATACGCATTCTGCCTCTCCGACCGACTGAGCACC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGGCATACGCATTCTACCTCTCCGACCGATTGAGCACC
* * * *
24156618 CGCACG-TCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CTTTCCATGTCTAAGCCC
131 AGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATA-CGAG-TACATTCCATGTCTAAGCCC
24156676 TAGGCAAACC
Statistics
Matches: 452, Mismatches: 90, Indels: 27
0.79 0.16 0.05
Matches are distributed among these distances:
366 3 0.01
367 121 0.27
368 321 0.71
369 7 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (367 bp):
GCATATGAAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAAGGTTACAACAGCAAGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCCGGCATACGCATTCTACCTCTCCGACCGATTGAGCACC
AGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTACATTCCATGTCTAAGCCCCAACCGGA
TCGAGGGTTATGACAGCAGGACTGGCAGCGGGATCGACAGCACACAAAGGCGGACCGGGCTGATC
CCAGACTTACGCATTATGCCTCTTCGACCCGCCTCTCCGGTCGACTAAGCGCCCGCACACTCATT
TCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAA
Found at i:24156492 original size:26 final size:26
Alignment explanation
Indices: 24156462--24156514 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24156452 GTTGACTTAG
24156462 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
**
24156488 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24156514 G
1 G
24156515 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:24156778 original size:158 final size:157
Alignment explanation
Indices: 24156529--24156830 Score: 383
Period size: 158 Copynumber: 1.9 Consensus size: 157
24156519 GATCGAACTG
* * * *
24156529 AAGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCATACGCATTC
1 AAGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGCCCATCCCCGACATACGCATTA
* * *
24156594 TGCCTCTCCGACCGACTGAGCACCCGCACG-TCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCT
66 TGCCTCTCCGACCGACTCAGCACCCGCACGCT-CATTTCGTGGGTTGACTTAGGCATACGGAGCT
*
24156658 CTTTCC-ATGTCTAAGCCCTAGGCAAACC
130 CATTCCTA-GTCTAAGCCCTAGGCAAACC
* * *
24156686 AAGGTTGTGGCAGCAGGACCGACAGCACGCAGTGGGGGACCGAGCCCTTCCTCGACTTACGCATT
1 AAGGTTGTGGCAGCAGGACCGACAGCACGCAG-GGGGGACCGAGCCCATCCCCGACATACGCATT
* * * ** * * * *
24156751 ATGCCTCTTCGGCCGGCTCAGTGCCCGCCCGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTT
65 ATGCCTCTCCGACCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGCT
24156816 CATTCCTAGTCTAAG
130 CATTCCTAGTCTAAG
24156831 ATTAGACCAG
Statistics
Matches: 122, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
157 31 0.25
158 89 0.73
159 2 0.02
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.22
Consensus pattern (157 bp):
AAGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGCCCATCCCCGACATACGCATTA
TGCCTCTCCGACCGACTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGCTC
ATTCCTAGTCTAAGCCCTAGGCAAACC
Found at i:24157014 original size:26 final size:26
Alignment explanation
Indices: 24156964--24157016 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24156954 GTTAGCTTAG
* *
24156964 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24156990 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24157016 G
1 G
24157017 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24157724 original size:26 final size:26
Alignment explanation
Indices: 24157687--24157738 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24157677 GTTGACTTAG
24157687 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
*
24157713 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATCCCTAGTCTAA
24157739 AATCAGACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:24158092 original size:26 final size:26
Alignment explanation
Indices: 24158056--24158108 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24158046 GTTGACTTAG
24158056 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24158082 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24158108 G
1 G
24158109 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24158460 original size:26 final size:26
Alignment explanation
Indices: 24158424--24158476 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24158414 TTTGACTTAG
24158424 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
24158450 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24158476 G
1 G
24158477 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24158822 original size:26 final size:26
Alignment explanation
Indices: 24158793--24158845 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24158783 GTTGACTTAG
*
24158793 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24158819 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24158845 G
1 G
24158846 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24158866 original size:369 final size:369
Alignment explanation
Indices: 24157651--24159039 Score: 1536
Period size: 369 Copynumber: 3.8 Consensus size: 369
24157641 TCTGGTCGGC
* * *
24157651 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCA
1 TGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * *
24157716 TACAGAGTTCATTCCTAGTCTAAAATCAGACTGGATCGAGGGTTGCTA-CAGCAGGATCGACAGC
66 TACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTG-TAGCAGCAGGATCGACAGC
* * * * * * *
24157780 ACGTAGAGGGCGATCGAGCCAACG-T-AGGGGCTTGCACATTCTGCCTCTCCGACCGGTTGAGCG
130 ACGCAG-GGGGGATCGAG---ACGATCCGCGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCG
* * *
24157843 CCCGCACGCTCGTTTCATGGGTTGGCTTGGGCATATGGAGTACATTCCACGTCTAAGCCCCAGTC
191 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTC
* * * *
24157908 GGACCGAGGGTTGTGGTAGCAGGACCGGC-AGCGGGATCGGTAGCATGTAAAGGGGGATCAGGCT
256 GGACCAAGGGTTGTGGTAGCAGGACCGGCAAGCGGGATCGGTAGCACGCAGAGGGGGATCAGGCT
* * **** * *
24157972 GATCCCCGACTTATGCATTATGCCT-TCCGACCAGCTTCTCCGACCGAC
321 GATCCCCGACTTACGCATTATGCCTCTCAGGTTGGCCTCTCCGACCGAT
** *
24158020 TGAGTGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * * *
24158085 TACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGAACCGAGGG-T-TACGACAGTAGGATCGGCA
66 TACAGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGTA-G-CAGCAGGATCGACA
* ** * * * * *
24158147 GCATGCAAAGGGGACCGAG-CCAGTCCTCGACTTGCACATTCTACCTCTCCGGTCGGCTGAGCGC
128 GCACGCAGGGGGGATCGAGACGA-TCCGCGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGC
* *
24158211 CCGCACGC-CTGTTTCGTGGGTTCGCTTAGGCATACGGAGTACATTCCACGTTTAAGCCCCAGTC
192 CCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTC
* * * * * * * *
24158275 GGACCGAGGGTTATGGCAGCAGGATC-G-ATAGTGGGATCGGTAGCACGCAGAGGGGGACCGGGA
256 GGACCAAGGGTTGTGGTAGCAGGACCGGCA-AGCGGGATCGGTAGCACGCAGAGGGGGATCAGGC
* ** * * * * *
24158338 TGATCCCTGGTTTTCACATTATGCCTCTCAGGTTGACCTCTCCGGCCGGT
320 TGATCCCCGACTTACGCATTATGCCTCTCAGGTTGGCCTCTCCGACCGAT
* * *
24158388 TGAGCGCCCGCACGCTCGATTT-GTGGTTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
1 TGAGCACCCGCACGCTC-ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * * * *
24158452 ATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCGGATCAAGGGTTGTAGCAGCAGGATCAATAG
65 ATACAGAGTTCATTCCCAGTCTAAGATCAG-ACTGGACCGAGGGTTGTAGCAGCAGGATCGACAG
* * * * * ** * * *
24158516 CACGTAGGGGGGATTGAGACGATCCCCGGCTTGCACATTTTGCCAGTCTGGTCGGCTGAGCGCCT
129 CACGCAGGGGGGATCGAGACGATCCGCGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCC
* * *
24158581 GCATGCTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCAAAGCCCCAG-CTGG
194 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTC-GG
* ** * * *
24158645 ACAAAGGGTTGTGGTAGCAGGACCGGCAAGCGGGATCGACAGCACACAGAGAGGGATCAAGCTGA
258 ACCAAGGGTTGTGGTAGCAGGACCGGCAAGCGGGATCGGTAGCACGCAGAGGGGGATCAGGCTGA
* *
24158710 TCCCCGACTTGCGCATTATGCCTCTCTGGTTGGCCTCTCCGACCGAT
323 TCCCCGACTTACGCATTATGCCTCTCAGGTTGGCCTCTCCGACCGAT
* *
24158757 TGAGCATCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * *
24158822 TACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAACAGCAGGATCGGCAGCA
66 TACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTAGCAGCAGGATCGACAGCA
* * * * * *
24158887 CGCATGGGGGATCGAGCCGATCCGCGACTTGCGCATTCTGCCTCTCCGATTGGTTTAGCGCCCGC
131 CGCAGGGGGGATCGAGACGATCCGCGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCGC
* * * *
24158952 ACGCCCGTTTCGTGGGTTGGCTTAGGCATA-GAGAGCT-CATTCCAAGTCTAAGCCCCAATCAGA
196 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-GAG-TACATTCCACGTCTAAGCCCCAGTCGGA
24159015 CCGAA-GGTTGTGGTAGCAGGACCGG
259 CC-AAGGGTTGTGGTAGCAGGACCGG
24159040 TAGCATGCAG
Statistics
Matches: 839, Mismatches: 154, Indels: 54
0.80 0.15 0.05
Matches are distributed among these distances:
364 1 0.00
366 5 0.01
367 160 0.19
368 251 0.30
369 414 0.49
370 8 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (369 bp):
TGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
TACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTAGCAGCAGGATCGACAGCA
CGCAGGGGGGATCGAGACGATCCGCGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGACC
AAGGGTTGTGGTAGCAGGACCGGCAAGCGGGATCGGTAGCACGCAGAGGGGGATCAGGCTGATCC
CCGACTTACGCATTATGCCTCTCAGGTTGGCCTCTCCGACCGAT
Found at i:24159273 original size:158 final size:157
Alignment explanation
Indices: 24158819--24159311 Score: 508
Period size: 158 Copynumber: 3.1 Consensus size: 157
24158809 CCCAGTCTAA
* * *
24158819 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAACAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGAC-GGACCGAGGGTTGCAGCAGCAGGATCGGCA
* * * ** *
24158884 GCACGCATGGGGGATCGAGCCGATCCGCGACTTGCGCATTCTGCCTCTCCGATTGGTTTAGCGCC
65 GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTCAGCGCC
* * *
24158949 CGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTAGCTTAT
* ** * * ** * *
24158977 GCATA-GAGAGCTCATT-CCAAGTCTAAGCCCCA-ATCAGACCGAAGGTTGTGGTAGCAGGACCG
1 GCATACG-GAGTTCATTCCCAA-TCTAAG-ATCAGA-CGGACCGAGGGTTGCAGCAGCAGGATCG
* * * * * * * *
24159039 GTAGCATGCAGAGGGGGACTGAGTCGATCCCCGAGTTGTGCATTCTGCCTCTTCGACCGGCTCAG
62 GCAGCACGCAG-GGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTCAG
* *
24159104 CGCCCGCACGCTCATTTCGTGGGTTAACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTAGCTTAT
* * *
24159136 GCATACGGAGTTCATTCCCAATCCAAGATCAGACGGGACCGAGGGTTGCAGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGAC-GGACCGAGGGTTGCAGCAGCAGGATCGGCA
* * * * *
24159201 GCACGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGATTGAGCGCC
65 GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTCAGCGCC
* * *
24159266 CGGACGCTCGTTTCATAGGTTAGCTT-T
130 CGCACGCTCGTTTCGTGGGTTAGCTTAT
24159293 GGCATACGGAGTTCATTCC
1 -GCATACGGAGTTCATTCC
24159312 ATGTCTAAGC
Statistics
Matches: 264, Mismatches: 61, Indels: 20
0.77 0.18 0.06
Matches are distributed among these distances:
157 4 0.02
158 136 0.52
159 119 0.45
160 5 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACGGACCGAGGGTTGCAGCAGCAGGATCGGCAG
CACGCAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTCAGCGCCC
GCACGCTCGTTTCGTGGGTTAGCTTAT
Found at i:24160047 original size:26 final size:26
Alignment explanation
Indices: 24160016--24160067 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24160006 GTTGACTTAG
24160016 GCATACGGAGTTCATGCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
* *
24160042 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
24160068 CGTCAGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAGTCTAA
Found at i:24160744 original size:159 final size:157
Alignment explanation
Indices: 24160410--24160914 Score: 432
Period size: 159 Copynumber: 3.2 Consensus size: 157
24160400 CCCTAGTCTA
* ** * * *
24160410 AGCATACGGAGTTCATTGCCA-CTCTAAGATCAGACTAG-ACCAAAGGTTGATGGCAGCAGGATC
1 AGCATACGGAGTTCATT-CCATGTCTAAGCCCAGAC-CGTACCGAGGGTTG-TGGCAGCAGGATC
* * * *
24160473 GACAGCAAGCAG-GGGGGACTGAGCCGATCCTCGGCTTACGCATTCTGCCTCTTCGATCGACTGA
63 GACAGCACG-AGAGGGGGACTGAGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGACCGACTGA
* * * *
24160537 GTGCCTGCATGCCCGTTTCGTGGGTTGGCTT
127 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* * * * * *
24160568 AGAAATA-GGTAGCTCATTCCATGTCTAAGCCCTAGTCGGT-CTGAGGGTTGTGGCAGCGGGATC
1 AG-CATACGG-AGTTCATTCCATGTCTAAGCCC-AGACCGTACCGAGGGTTGTGGCAGCAGGATC
* * * * * *
24160631 GACAGCACGTAGAGGGGGACTGGGTTGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCA
63 GACAGCACG-AGAGGGGGACTGAGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGACCGACTGA
* * * *
24160696 ACGCCCGCACGCTCATTTCGTCGGTTGACTT
127 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* ** * * * *
24160727 ATGCATACGGAGTTCATTCCCA-ATCTAAGATCGGACCGTACCGAGGGTTGCGACAGTAGGATCG
1 A-GCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCGTACCGAGGGTTGTGGCAGCAGGATCG
* * * *
24160791 ACAGCAC-AGAGGGGGGACCGAGTCGATCCCCGACTTTCGCATTCTGCCT-TTCCGACCGATTGA
64 ACAGCACGAGA-GGGGGACTGAGTCGATCCCCGGCTTACGCATTCTGCCTCTT-CGACCGACTGA
* * *
24160854 GCGCTCGCACGCTTGTTTCTTGGGTTGGCTT
127 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
*
24160885 AGGCATACGGAGTTCATTCCGTGTCTAAGC
1 A-GCATACGGAGTTCATTCCATGTCTAAGC
24160915 ATATGGAGCT
Statistics
Matches: 271, Mismatches: 63, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
157 7 0.03
158 120 0.44
159 135 0.50
160 9 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
AGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCGTACCGAGGGTTGTGGCAGCAGGATCGAC
AGCACGAGAGGGGGACTGAGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGACCGACTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTT
Found at i:24161658 original size:26 final size:26
Alignment explanation
Indices: 24161608--24161660 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24161598 GTTGACATAG
*
24161608 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
* *
24161634 GCATACGGAGTTCATTCCCTCTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
24161660 G
1 G
24161661 ATTAGATCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTCTAA
Found at i:24161954 original size:159 final size:158
Alignment explanation
Indices: 24161690--24162268 Score: 531
Period size: 159 Copynumber: 3.7 Consensus size: 158
24161680 TGCGATAGTA
* * * * *
24161690 GGACCGACAGCACGC-AGGGGGATCGGG-TCGATCCCCGACTTGTGCATTCTGCCTTTTCGATCG
1 GGACCGACAGCACGCAAAGGGGATCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTTCGATCG
* * * * * *
24161753 ACTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAG
65 GCTCAGCACCCGCACGCTCATTTCATGGGTTGGCTTATGCATAGGGAGCTCATTCCATGTCTAAG
*
24161818 CCCCAGTCGGACTGAGGGTTGTGGCAGCG
130 CCCCAGTCGGACCGAGGGTTGTGGCAGCG
* * *
24161847 GGACCGGCAGCACGCAAAGAGGGATCGGGCTGACCCCCGGCTTGCGTATTATGCCTCTTCGATCG
1 GGACCGACAGCACGCAAAG-GGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGATCG
* * * * * ** * * * *
24161912 GTTCAACGCCCGTATGCTTGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCC-TAGTCTAA
65 GCTCAGCACCCGCACGCTCATTTCATGGGTTGGCTTATGCATAGGGAGCTCATTCCAT-GTCTAA
** * * * *
24161976 G-ATCAGACCGGACCGAGGGTTGCGACAGCA
129 GCCCCAG-TCGGACCGAGGGTTGTGGCAGCG
* * ** * * * * * *
24162006 GGATCGACAGCATGCAGGGGGGACCGGG-TCGATCCCCAGCTCGCGCATTCTGCCTCTCCGACCG
1 GGACCGACAGCACGCAAAGGGGATCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTTCGATCG
* * * * * * * * *
24162070 GCTGAGCATCTGCACACCCATTTCGTGGGTAGGCTTA-GTCGTAGGGAGCTCATTTCATGTCTAA
65 GCTCAGCACCCGCACGCTCATTTCATGGGTTGGCTTATG-CATAGGGAGCTCATTCCATGTCTAA
* *
24162134 GCCCCAAGTCAGACCGAGGGTTGTGGCAACG
129 GCCCC-AGTCGGACCGAGGGTTGTGGCAGCG
* * * *
24162165 GGACCGACAGCACGTAGAGGAGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGATCG
1 GGACCGACAGCACGCAAAGG-GGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGATCG
24162230 GCTCAGCACCCGCACGCTCATTTCATGGGTTGGCTTATG
65 GCTCAGCACCCGCACGCTCATTTCATGGGTTGGCTTATG
24162269 GAGAAACGGA
Statistics
Matches: 319, Mismatches: 90, Indels: 22
0.74 0.21 0.05
Matches are distributed among these distances:
157 16 0.05
158 82 0.26
159 152 0.48
160 68 0.21
161 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
GGACCGACAGCACGCAAAGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGG
CTCAGCACCCGCACGCTCATTTCATGGGTTGGCTTATGCATAGGGAGCTCATTCCATGTCTAAGC
CCCAGTCGGACCGAGGGTTGTGGCAGCG
Found at i:24162258 original size:318 final size:317
Alignment explanation
Indices: 24161634--24162455 Score: 954
Period size: 320 Copynumber: 2.6 Consensus size: 317
24161624 CCCAGTCTAA
* * * * * * * * *
24161634 GCATACGGAGTTCATTCCCT-CTCTAAGATTAGATCTGATCGAGGGTTGCGATAGTAGGACCGAC
1 GCATACGAAGTTCATT-CCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGAC
* * * * *
24161698 AGCACGCA-GGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTTTTCGATCGACTGAGCAC
65 AGCACGCAGGGGGGACCGGGTCGATCCCCG-CTTGCGCATTCTGCCTCTCCGACCGACTGAGCAC
* * *
24161762 CCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTCG
129 CCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTCA
* * * * *
24161827 GACTGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAAAGAGGGATCGGGCTGACCCCCGGCTTGC
194 GACCGAGGGTTGTGGCAACGGGACCGACAGCACGCAAAGAGGGATCGGGCCGACCCCCGGCTTAC
* * * * * **
24161892 GTATTATGCCTCTTCGATCGGTTCAACGCCCGTATGCTTGTTTCATGGGTTGACTTAT-
259 GCATTATGCCTCTTCGATCGGCTCAACACCCGCACGCTCATTTCATGGGTTGACTTATG
24161950 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * *
24162015 GCATGCAGGGGGGACCGGGTCGATCCCCAGCTCGCGCATTCTGCCTCTCCGACCGGCTGAGCATC
66 GCACGCAGGGGGGACCGGGTCGATCCCC-GCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACC
* * * * *
24162080 TGCACACCCATTTCGTGGGTAGGCTTAGTCGTAGGGAGCTCATTTCATGTCTAAGCCCCAAGTCA
130 CGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCC-AGTCA
* * *
24162145 GACCGAGGGTTGTGGCAACGGGACCGACAGCACGTAGAG-GAGGATCGGGCCGATCCCCGGCTTA
194 GACCGAGGGTTGTGGCAACGGGACCGACAGCACGCAAAGAG-GGATCGGGCCGACCCCCGGCTTA
* *
24162209 CGCATTATGCCTCTTCGATCGGCTCAGCACCCGCACGCTCATTTCATGGGTTGGCTTATG
258 CGCATTATGCCTCTTCGATCGGCTCAACACCCGCACGCTCATTTCATGGGTTGACTTATG
* * * * * *
24162269 GAGAAACGGAA-TTCATTCCCAGTCTAAGATC-GAACCGGACCGAAGGTTGTGACAGCAGGATCA
1 G-CATAC-GAAGTTCATTCCTAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGACAGCAGGATCG
* * * *** * * *
24162332 ATAGCACACAGGGGGGACCGAGTCGATCAATGGCTTGCACATTCTGCCTCTCCGGCCAACTGAGC
63 ACAGCACGCAGGGGGGACCGGGTCGATC-CCCGCTTGCGCATTCTGCCTCTCCGACCGACTGAGC
* * * * *
24162397 ACCCGCACGCTCATTTCGTGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
127 ACCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGC
24162456 ATATGGAGCT
Statistics
Matches: 424, Mismatches: 72, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
315 3 0.01
316 58 0.14
317 100 0.24
318 109 0.26
319 2 0.00
320 149 0.35
321 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (317 bp):
GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCCCGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCC
GCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTCAGA
CCGAGGGTTGTGGCAACGGGACCGACAGCACGCAAAGAGGGATCGGGCCGACCCCCGGCTTACGC
ATTATGCCTCTTCGATCGGCTCAACACCCGCACGCTCATTTCATGGGTTGACTTATG
Found at i:24163185 original size:26 final size:26
Alignment explanation
Indices: 24163149--24163201 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24163139 GTTGACTTAG
24163149 GCATACAGAGTTCA-TCACCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
*
24163175 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24163201 G
1 G
24163202 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:24163881 original size:159 final size:157
Alignment explanation
Indices: 24163582--24163884 Score: 376
Period size: 159 Copynumber: 1.9 Consensus size: 157
24163572 AACTGAATCG
* * *
24163582 AGGGTTGTGACAGTAAGATCGATAGCACGTAGGGGGATCAGGCCGATCCCTGGCTTGCACATTCT
1 AGGGTTGTGACAGTAAGATCGATAGCACGTAGGGGGACCAGGCCGATCCCCGGCTTGCACATTAT
** *
24163647 ACCTCTCCGGTCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGCATGCAGAGTACA
66 ACCTCTCCGGTCGGCTGAGCACCCACACGCTCGTTTCATGGGTTAACTTAGGCATACAGAGTACA
*
24163712 TTCCACGTCTAAGCCCCAACAAGACCA
131 TCCCACGTCTAAGCCCCAACAAGACCA
* * * * * * *
24163739 AGGGTTGTGGCAGTAGGATCGGTAGCACGTAGAGGGGGCCCGGGCTGATCCCCGGCTTGCGCATT
1 AGGGTTGTGACAGTAAGATCGATAGCACGT--AGGGGGACCAGGCCGATCCCCGGCTTGCACATT
* * ** *
24163804 ATGCCTCTCCGG-CTGGCTGAGCATCGGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGT
64 ATACCTCTCCGGTC-GGCTGAGCACCCACACGCTCGTTTCATGGGTTAACTTAGGCATACAGAGT
*
24163868 TCATCCC-CAGTCTAAGC
128 ACATCCCAC-GTCTAAGC
24163885 ATACGGAGTT
Statistics
Matches: 122, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
157 27 0.22
158 2 0.02
159 93 0.76
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
AGGGTTGTGACAGTAAGATCGATAGCACGTAGGGGGACCAGGCCGATCCCCGGCTTGCACATTAT
ACCTCTCCGGTCGGCTGAGCACCCACACGCTCGTTTCATGGGTTAACTTAGGCATACAGAGTACA
TCCCACGTCTAAGCCCCAACAAGACCA
Found at i:24163887 original size:26 final size:26
Alignment explanation
Indices: 24163857--24163909 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24163847 GTTAACTTAG
24163857 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24163883 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24163909 G
1 G
24163910 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24164059 original size:343 final size:343
Alignment explanation
Indices: 24163077--24164226 Score: 1072
Period size: 343 Copynumber: 3.3 Consensus size: 343
24163067 CCACCCGTTC
** * * * * *
24163077 GATCCCCGGCTTACGCATCCTGCCTCTCCGG-TCAGCAGAGCGCTCGG-ACGCTCATTTTGTGGG
1 GATCCCCGGCTTACGCATTATGCCTCTCCGGCTCGGCTGAGCAC-CGGCACGCTCGTTTCGTGGG
* * *
24163140 TTGACTTAGGCATACAGAGTTCATCACCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
65 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * *
24163205 AGA-TCGGATCGAGGGTTGCGGCAGTAAGATCGACAGCACGTAGGGGGACCGAACCAATCCCCGG
130 AGACT-GGATCGAGGGTTGCGGCAGTAAGATCGACAGCACGTAGGGGGACTGGGCCGATCCCCTG
* * * * * * *
24163269 CTTACGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGCAC-GCTCATTTCGTGGGTTGGCTTAGG
194 CTTGCGCATTCTACCTCTCCGGTCGGCTGAGCACCCGCACACCTCGTTTCATGGGTTGGCTTAGG
* * * *
24163333 CATACGGAGTACATTCCACGTCTAAGCCGCAGCCAGACCGAGGGTTGTGGCAGCAGGACCTGCAG
259 CATAGGGAGTACATTCCACGTCTAAGCCCCA-ACAGACCGAGGGTTGTGGCAGTAGGA--T-C-G
*
24163398 CAAGATCTACAGCATGCAGAGGGGGATCGGGCT
319 ---G---T--AGCACGCAGAGGGGGATCGGGCT
* * * * * *
24163431 AATCCTCAGCTTACGTATTATGCCTCTCCGATCGGCCTTTTCGGCCGACTAAGCACCGGCACACT
1 GATCCCCGGCTTACGCATTATGCCTCT-C---CGG-C---TC-G--G-CTGAGCACCGGCACGCT
* * * * * **
24163496 CGTTTCGTGGGTTGGCTTAGGCATA-TGAGTTCATCTCCAGTCTAAGCCTATGGAGTTTGTTCCC
54 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * * *
24163560 AGTCTAA-AGTCAAACTGAATCGAGGGTTGTGACAGTAAGATCGATAGCACGTAGGGGGA-TCAG
119 AGTCTAAGA-TCAGACTGGATCGAGGGTTGCGGCAGTAAGATCGACAGCACGTAGGGGGACT-GG
*
24163623 GCCGAT-CCCTGGCTTGCACATTCTACCTCTCCGGTCGGCTGAGCA-CC-CACACGCTCGTTTCA
182 GCCGATCCCCT-GCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCACCCGCACAC-CTCGTTTCA
* *
24163685 TGGGTTGGCTTAGGCAT-GCAGAGTACATTCCACGTCTAAGCCCCAACAAGACCAAGGGTTGTGG
245 TGGGTTGGCTTAGGCATAG-GGAGTACATTCCACGTCTAAGCCCCAAC-AGACCGAGGGTTGTGG
* **
24163749 CAGTAGGATCGGTAGCACGTAGAGGGGGCCCGGGCT
308 CAGTAGGATCGGTAGCACGCAGAGGGGGATCGGGCT
* * *
24163785 GATCCCCGGCTTGCGCATTATGCCTCTCCGGCT-GGCTGAGCATCGGCACGCTCGTTTCATGGGT
1 GATCCCCGGCTTACGCATTATGCCTCTCCGGCTCGGCTGAGCACCGGCACGCTCGTTTCGTGGGT
* *
24163849 TAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * *
24163914 GACTGGATCAAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGGGGGGACTGGGCCGATCCCCTGC
131 GACTGGATCGAGGGTTGCGGCAGTAAGATCGACAGCACGTA-GGGGGACTGGGCCGATCCCCTGC
* * **
24163979 TTGCGCATTCTACCTTTCTGACCGGCTGAGCACCCGCACACCT-GTTTCATGGGTTGGCTTAGGC
195 TTGCGCATTCTACCTCTCCGGTCGGCTGAGCACCCGCACACCTCGTTTCATGGGTTGGCTTAGGC
* * * * * **
24164043 ATAGGGAGCT-CATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGGGGTAGCT-GGACCGACA
260 ATAGGGAG-TACATTCCACGTCTAAGCCCCA-ACAGACCGAGGGTTGTGGCAG-TAGGATCGGTA
*
24164106 GCACGCAGAGGGGGATCGAGCT
322 GCACGCAGAGGGGGATCGGGCT
* * * * * * * * * * *
24164128 GACCCCCGACTTGCGTATTATGCCTCTTC-GATCGGCTCAACGCCCGTACGCTCGTTTCGTGGGT
1 GATCCCCGGCTTACGCATTATGCCTCTCCGGCTCGGCTGAGCACCGGCACGCTCGTTTCGTGGGT
* *
24164192 TGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
24164227 ATCAGACCGG
Statistics
Matches: 650, Mismatches: 112, Indels: 79
0.77 0.13 0.09
Matches are distributed among these distances:
341 36 0.06
342 76 0.12
343 209 0.32
344 14 0.02
345 5 0.01
346 1 0.00
349 1 0.00
350 3 0.00
353 1 0.00
354 62 0.10
355 1 0.00
356 1 0.00
358 3 0.00
359 1 0.00
362 1 0.00
363 3 0.00
364 4 0.01
365 7 0.01
366 189 0.29
367 32 0.05
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (343 bp):
GATCCCCGGCTTACGCATTATGCCTCTCCGGCTCGGCTGAGCACCGGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACTGGATCGAGGGTTGCGGCAGTAAGATCGACAGCACGTAGGGGGACTGGGCCGATCCCCTGCT
TGCGCATTCTACCTCTCCGGTCGGCTGAGCACCCGCACACCTCGTTTCATGGGTTGGCTTAGGCA
TAGGGAGTACATTCCACGTCTAAGCCCCAACAGACCGAGGGTTGTGGCAGTAGGATCGGTAGCAC
GCAGAGGGGGATCGGGCT
Found at i:24164215 original size:159 final size:159
Alignment explanation
Indices: 24163883--24164385 Score: 409
Period size: 159 Copynumber: 3.2 Consensus size: 159
24163873 CCCAGTCTAA
* * ** * * * * *
24163883 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACTGGATCAAGGGTT-GCGGTAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCAGGGGTTGGC-GCAGCAGGACCGA
* * * * * *
24163946 CAGCACGTAGGGG-GGACTGGGC-CGATCCCCTG-CTTGCGCATTCTACCTTTCTGACCGGCTGA
64 CAGCACGCAGGGGTGGAC-CGGCTCGA-CCCCCGACTTGCGCATTATACCTCTCTGACCGGCTCA
* * * *
24164008 GCACCCGCACAC-CTGTTTCATGGGTTGGCTTAG
127 ACGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * * * * * *
24164041 GCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-TCAGACC-GAGGGTTGGGGTAGCTGGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCAG-GGGTTGGCGCAGCAGGACCGA
* * * *
24164104 CAGCACGCAGAGGG-GGATCGAGCT-GACCCCCGACTTGCGTATTATGCCTCT-TCGATCGGCTC
64 CAGCACGCAG-GGGTGGACCG-GCTCGACCCCCGACTTGCGCATTATACCTCTCT-GACCGGCTC
* * *
24164166 AACGCCCGTACGCTCGTTTCGTGGGTTGACTTAT
126 AACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
24164200 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCAGGGGTTGTCGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCAGGGGTTGGCGCAGCAGGACCGAC
* * * * * * * *
24164264 AGCATGCAGGGGTGGACCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCTGACCGGCTGAGCG
65 AGCACGCAGGGGTGGACCGGCTCGACCCCCGACTTGCGCATTATACCTCTCTGACCGGCTCAACG
24164329 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
24164359 GCATACGGGGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
24164386 TATACGGAGC
Statistics
Matches: 270, Mismatches: 58, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
157 3 0.01
158 66 0.24
159 195 0.72
160 6 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCAGGGGTTGGCGCAGCAGGACCGACA
GCACGCAGGGGTGGACCGGCTCGACCCCCGACTTGCGCATTATACCTCTCTGACCGGCTCAACGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24165487 original size:26 final size:26
Alignment explanation
Indices: 24165457--24165509 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24165447 CTTGACTTAG
24165457 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24165483 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24165509 G
1 G
24165510 ATCGGACCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24165853 original size:355 final size:357
Alignment explanation
Indices: 24165040--24166033 Score: 1003
Period size: 355 Copynumber: 2.7 Consensus size: 357
24165030 GCGCATCCTG
* * * * *
24165040 CCTCTCTGGTCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCAT
1 CCTCTCCGCTCGACTGAGCACCCACACGCTCGTTTCAT-GGTTGACTTAGGCATACGGAGTTCAT
* *
24165105 CCCCAGTCTAAGCATAAAGAGTTCATTCCCAGTCTAAGAGT-GGACTGGATCGAGGGTTGCGACA
65 CCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGA-TCGGAC-CGATCGAGGGTTGCGACA
* * * *** * ** * *
24165169 GCAGGATCGACAGCACGCAGGGGAGACCGGGTTGATCCCCGACTTGCGCATTTTGTCGCTCCAAC
128 GCAGGATCGGCAGCACGTAGGGGAGATC-GACCGATCCCCG--TT-TGCATTTTACCTCTCCGAC
** * * ** * *
24165234 CGGTTGAACACCCACACGCTCGTTTCGTGGGTTAGG-TTAGGCACGCAGAGTACATTCCATATCT
189 TAGCTGAGCACCCACACGCTCGTTTCGTGGGTT-GGCTTAGGCATACGGAGTACATTCCACATCT
* *
24165298 AAGCCCCAGCCAGATCAAGGGATGTGGCAGCAGGACCTGCAGCAAGATCAACAGCACGCAGAAGG
253 AAGCCCCAGCCAGATCAAGGGATATGGCAGCAAGACC-GCA-CAAGAT-AACAGCACGCAG-AGG
** *
24165363 GGACCGGGCTGATCCTTAGCTTACGAATTATGCCTCCTGGTCGA
314 GGACCGGGCTGATCCCGAGCTTACGAATTATGCCTCCTGGCCGA
* * **
24165407 CCTCTCCGGTCGGCTGAG-TGCCAGCACGCTCGTTTCATGGCTTGACTTAGGCATACGGAGTTCA
1 CCTCTCCGCTCGACTGAGCACCCA-CACGCTCGTTTCATGG-TTGACTTAGGCATACGGAGTTCA
* * *
24165471 TCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGTATTGAAGGTTGCGACA
64 TCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCG-ATCGAGGGTTGCGACA
* * * * *
24165536 GCAGGATCGGCAGCACGTGGGGGGGATCGCACCGATCCCTGTTTGCTTATTCTACCTCTCTGACT
128 GCAGGATCGGCAGCACGTAGGGGAGATCG-ACCGATCCCCGTTTGC--ATTTTACCTCTCCGACT
24165601 AGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAA
190 AGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAA
* * *
24165666 GCCCCAGCC-GAATCGAGGGTTATGGCAGCAAGA-C-CA-ATAG-T-ACA-TA-G-AG-GGGGAC
255 GCCCCAGCCAG-ATCAAGGGATATGGCAGCAAGACCGCACA-AGATAACAGCACGCAGAGGGGAC
* * * *
24165721 CGGGCTGATCCCCGA-CTTGCGCATTATGCCTTTCTGGCCGG
318 CGGGCTGAT-CCCGAGCTTACGAATTATGCC-TCCTGGCCGA
24165762 CCTCTCCCGCT-GACTGAGCACCCACACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCA
1 CCTCT-CCGCTCGACTGAGCACCCACACGCTCGTTTCAT-GGTTGACTTAGGCATACGGAGTTCA
** * * *
24165826 TCCGTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTGCGACA
64 TCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACC-GATCGAGGGTTGCGACA
* * * * *
24165891 GCAGGATCAGCTGCACGTAAGGGTGATCGAGCCGATCCCCGGGTTATGCATTTTACCTCTCCG-G
128 GCAGGATCGGCAGCACGTAGGGGAGATCGA-CCGATCCCC--GTT-TGCATTTTACCTCTCCGAC
* * * * * *
24165955 TCGACTGAGCACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGTGTACATTCCTCGTCT
189 TAG-CTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCT
*
24166020 AAGCCCCAGTCAGA
253 AAGCCCCAGCCAGA
24166034 CCGAGGGTTG
Statistics
Matches: 530, Mismatches: 75, Indels: 55
0.80 0.11 0.08
Matches are distributed among these distances:
354 29 0.05
355 148 0.28
356 91 0.17
357 5 0.01
358 4 0.01
359 3 0.01
361 2 0.00
362 2 0.00
363 2 0.00
364 2 0.00
365 6 0.01
366 99 0.19
367 137 0.26
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (357 bp):
CCTCTCCGCTCGACTGAGCACCCACACGCTCGTTTCATGGTTGACTTAGGCATACGGAGTTCATC
CCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCGATCGAGGGTTGCGACAGCA
GGATCGGCAGCACGTAGGGGAGATCGACCGATCCCCGTTTGCATTTTACCTCTCCGACTAGCTGA
GCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCA
GCCAGATCAAGGGATATGGCAGCAAGACCGCACAAGATAACAGCACGCAGAGGGGACCGGGCTGA
TCCCGAGCTTACGAATTATGCCTCCTGGCCGA
Found at i:24165862 original size:26 final size:26
Alignment explanation
Indices: 24165812--24165864 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24165802 GTTGACTTAG
* *
24165812 GCATACGGAGTTCATCCGTAGTCTAA
1 GCATACGGAGTTCATCCGCAATCTAA
24165838 GCATACGGAGTTCATTCC-CAATCTAA
1 GCATACGGAGTTCA-TCCGCAATCTAA
24165864 G
1 G
24165865 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCGCAATCTAA
Found at i:24166182 original size:26 final size:26
Alignment explanation
Indices: 24166146--24166198 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24166136 GTTGACTTAG
* *
24166146 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
*
24166172 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
24166198 G
1 G
24166199 ATCATACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:24167680 original size:338 final size:338
Alignment explanation
Indices: 24167053--24167691 Score: 797
Period size: 338 Copynumber: 1.9 Consensus size: 338
24167043 ATGGAGTTCA
* ** *
24167053 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCCATTGTTGCAACA
1 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCCAGGGTTACAACA
* * *
24167118 GCAGGATCGACAGCACGTAGAGGGGATCATGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCATC
66 GCAAGATCGACAGCACGCAGAGGGGATCATGTCGATCCCCAGCTTGCGCATTCTACCTCTCCATC
* * * ** * *
24167183 TGGCTAAGCTCCCACACGCTCATTTTGTGGGTTGGCTTATTCATACGGAGTATATTCCACATCTA
131 TGACTAAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTA
* * * *
24167248 AGCCCCAACCGGACCGAGGGTTGTGGTAGCAAGACTGGCAGCAGGATCGACAGCACGCAGAGGGA
196 AGCCCCAACCGGACCGAGGGTTGTGGCAGCAAGACCGACAGCAGGATCGACAGCACACAGAGGGA
*
24167313 GACCGGCTTGATCCCCGGCTTGCGCATTATGCCTCTCCGATTGGCCTCTCCGATCGGCTGAGCGT
261 GACCGGCTTGATCCCCGGCTTACGCATTATGCCTCTCCGATTGGCCTCTCCGATCGGCTGAGCGT
24167378 CTGCACTCTCGTT
326 CTGCACTCTCGTT
* * * * *
24167391 TCCCCAGTCTAAGCATAC-GAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGAT
1 TCCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCAGATCCAGGGTTACAAC
* * *
24167455 AGCAAGATCGACAGCATGCAG-GAGGGATCATG-CTGATCCCC-GACTTGTGCATTCTACCTCTT
65 AGCAAGATCGACAGCACGCAGAG-GGGATCATGTC-GATCCCCAG-CTTGCGCATTCTACCTCTC
* ** * *
24167517 CAGTC-GACTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCAT
127 CA-TCTGACTAAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCAC
* ** * *
24167581 GTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCAGGATCGATAGCACACAG
191 ATCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAAGACCGACAGCAGGATCGACAGCACACAG
* * * *
24167646 AGTGG-GACCATG-TTGATCCTCGGCTTATGCATTATGCCTCTTCGAT
256 AG-GGAGACC-GGCTTGATCCCCGGCTTACGCATTATGCCTCTCCGAT
24167692 CGAACACTCC
Statistics
Matches: 253, Mismatches: 41, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
337 4 0.02
338 244 0.96
339 5 0.02
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (338 bp):
TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCCAGGGTTACAACA
GCAAGATCGACAGCACGCAGAGGGGATCATGTCGATCCCCAGCTTGCGCATTCTACCTCTCCATC
TGACTAAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTA
AGCCCCAACCGGACCGAGGGTTGTGGCAGCAAGACCGACAGCAGGATCGACAGCACACAGAGGGA
GACCGGCTTGATCCCCGGCTTACGCATTATGCCTCTCCGATTGGCCTCTCCGATCGGCTGAGCGT
CTGCACTCTCGTT
Found at i:24167770 original size:184 final size:183
Alignment explanation
Indices: 24167521--24167876 Score: 462
Period size: 184 Copynumber: 1.9 Consensus size: 183
24167511 CCTCTTCAGT
** * *
24167521 CGACTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTA
1 CGACTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTA
* * * *
24167586 AGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGA-CAGCAGGATCGATAGCACACAGAGTG
66 AGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGA-CGAGCAGCAGGATCGACAGCACACAGAGGG
* * * *
24167650 GGACCATGTTGATCCTCGGCTTATGCATTATGCCTCTTCGATCGAACACTCCGTC
130 GGA-CAGGCTGATCCTCGACTTACGCATTATGCCTCTTCGATCGAACACTCCGTC
* * * *
24167705 CGACTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGTATACGGAGTATATTCCTTGTCTA
1 CGACTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTA
* * * * **
24167770 AGCCCCAGCCAGATCGAGGGTTGTGGTAGCAGGACTAGCAGCGGGATCGACAGCATGCAGAGGGG
66 AGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACGAGCAGCAGGATCGACAGCACACAGAGGGG
* * *
24167835 GACGGGCTGATCCTTGACTTGCGCATTATGCCTCTTCGATCG
131 GACAGGCTGATCCTCGACTTACGCATTATGCCTCTTCGATCG
24167877 GCCTCTCCGG
Statistics
Matches: 146, Mismatches: 25, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
183 35 0.24
184 111 0.76
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (183 bp):
CGACTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTA
AGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACGAGCAGCAGGATCGACAGCACACAGAGGGG
GACAGGCTGATCCTCGACTTACGCATTATGCCTCTTCGATCGAACACTCCGTC
Found at i:24175358 original size:159 final size:158
Alignment explanation
Indices: 24175003--24175392 Score: 383
Period size: 159 Copynumber: 2.5 Consensus size: 158
24174993 TAAGCATACA
* ** * * * * * *
24175003 GAGTTCATTCGCAGTCTAAGATTGGACCGAATGGAGGGTTGCAGTAGTAGGATCGACAGCATGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATAGACAGCACGTA
* * * ** *
24175068 GGGGGGACCAGGCCGATCCCCGGTTTGCGCATTCTGCCTCTCCGGTCTACTGAACGCCCGCACGC
66 GGGGGGACCAGGCCGAACCCCGGCTTGCGCATTATGCCTCTCCGACCGACTGAACGCCCGCACGC
*
24175133 TCATTTCGTGGGTTGGCTTAGGCATAGG
131 TCATTTCGTGGGTTGACTTAGGCATAGG
** * ** * *
24175161 GA-TGTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGATAGGCAGCAC
1 GAGT-TCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGCAGCAGCAGGATAGACAGCAC
* * * * * *
24175223 GTAGAGGGGGACCAGGCTGAACCTCGGCTTGCGCATTATGCCTCTTCGACCGGCTTAGCGCCCGC
63 GTAG-GGGGGACCAGGCCGAACCCCGGCTTGCGCATTATGCCTCTCCGACCGACTGAACGCCCGC
* * * *
24175288 ATGCTCGTTTCGTGGGTTGACTTATGCATATG
127 ACGCTCATTTCGTGGGTTGACTTAGGCATAGG
* *
24175320 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACAGCAGCAGGATCA-ACAGCATGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGAT-AGACAGCACG-
24175384 TAGGGGGGA
64 TAGGGGGGA
24175393 TCGGGTCGAT
Statistics
Matches: 181, Mismatches: 42, Indels: 17
0.75 0.17 0.07
Matches are distributed among these distances:
157 3 0.02
158 46 0.25
159 124 0.69
160 8 0.04
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATAGACAGCACGTA
GGGGGGACCAGGCCGAACCCCGGCTTGCGCATTATGCCTCTCCGACCGACTGAACGCCCGCACGC
TCATTTCGTGGGTTGACTTAGGCATAGG
Found at i:24175404 original size:30 final size:30
Alignment explanation
Indices: 24175370--24175433 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
24175360 ACAGCAGCAG
*
24175370 GATCAACAGCATGCTAGGGGGGATCGGGTC
1 GATCAACAGCACGCTAGGGGGGATCGGGTC
*
24175400 GATCAACAGCACGCTGGGGGGGATCGGGTC
1 GATCAACAGCACGCTAGGGGGGATCGGGTC
24175430 GATC
1 GATC
24175434 CCCAGCTTGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.22, C:0.22, G:0.41, T:0.16
Consensus pattern (30 bp):
GATCAACAGCACGCTAGGGGGGATCGGGTC
Found at i:24176606 original size:26 final size:26
Alignment explanation
Indices: 24176576--24176628 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24176566 GTTGACTTGG
*
24176576 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24176602 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24176628 G
1 G
24176629 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:24178198 original size:26 final size:26
Alignment explanation
Indices: 24178168--24178220 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24178158 GTTGACTTAG
*
24178168 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGCCTAA
*
24178194 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATCCCTAGCCTAA
24178220 G
1 G
24178221 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGCCTAA
Found at i:24178912 original size:26 final size:26
Alignment explanation
Indices: 24178876--24178928 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24178866 GTTGACTTAG
*
24178876 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24178902 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24178928 G
1 G
24178929 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24179264 original size:159 final size:158
Alignment explanation
Indices: 24178902--24179405 Score: 489
Period size: 159 Copynumber: 3.2 Consensus size: 158
24178892 CCCAGTCTAA
* * *
24178902 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTACGGCAACAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGAC
** * *
24178966 AGCACGTAGGGGGGATTGGGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCCGTCCGGCTGAGCG
65 AGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCAGT-CGGCTGAGCG
* * * *
24179030 CCCACACACCCGTTTCGTGGGGTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * * ** *
24179060 GCATAGGGAGCTT-ATTCCATGTCTAA-ACCCTAG-CCAAACCGAGGGTTGTGGCAGTGGGACCG
1 GCATACAGAG-TTCATTCCATGTCTAAGA-TC-AGACCAGATCGAGGGTTGCGGCAGCAGGATCG
* * * *
24179122 ACAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCAATCGGCTCAA
63 ACAGCACGTAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCAGTCGGCTGAG
* *
24179187 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
24179219 ACATACAGAGTTCATTCCCA-GTCTAAGATCGGACCAGATCAAGGGTTGCAGTAGCAGGATTGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * *
24179283 AGTATGTAGGGGGGGGACCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGGCCGACTGAGC
65 AGCACGTA--GGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCAGTCGGCTGAGC
* * *
24179348 GACCGCACGCTCATTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
24179379 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
24179406 CATACGGAGC
Statistics
Matches: 273, Mismatches: 60, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.01
158 52 0.19
159 118 0.43
160 98 0.36
161 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCAGTCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24179429 original size:26 final size:26
Alignment explanation
Indices: 24179379--24179431 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24179369 GTTGGCTTAG
* *
24179379 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24179405 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24179431 G
1 G
24179432 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24180483 original size:25 final size:26
Alignment explanation
Indices: 24180437--24180486 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
24180427 TTGACTTAGG
*
24180437 CATACGGAGTTTATTCCCAGTCTAAC
1 CATACAGAGTTTATTCCCAGTCTAAC
**
24180463 CATACAGAG-TTATTCGTAGTCTAA
1 CATACAGAGTTTATTCCCAGTCTAA
24180487 GATAGGATCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (26 bp):
CATACAGAGTTTATTCCCAGTCTAAC
Found at i:24180838 original size:26 final size:26
Alignment explanation
Indices: 24180802--24180852 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24180792 TTGACTTAGG
24180802 CATACGGAGTTCA-TCCGCAGTCTAAA
1 CATACGGAGTTCATTCC-CAGTCTAAA
24180828 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
24180853 GATCAGACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:24181136 original size:26 final size:26
Alignment explanation
Indices: 24181107--24181159 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24181097 GTTGACTTAG
24181107 GCATAC-GACGTTCAACCCCAGTCTAA
1 GCATACGGA-GTTCAACCCCAGTCTAA
**
24181133 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
24181159 G
1 G
24181160 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:24181472 original size:674 final size:670
Alignment explanation
Indices: 24180414--24181663 Score: 1522
Period size: 674 Copynumber: 1.9 Consensus size: 670
24180404 TGCCCGTACG
* ** *
24180414 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAACCATACAGAGTTATTCG
1 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAACCCCAGTCTAACCATACAGAGTTATTCC
* * * * * * * * *
24180479 TAGTCTAAGATAGGATCGGATCGAGGGTTACGACAGTAGGATCGGCAGCACGCAAAGGGACCAAG
66 CAGTCTAAGATAGAACCGGATCGACGGTTACGACAGCAAGATCGACAGCACACAAAGAGACCAAG
* * * *
24180544 CCGATCCCCGACTTCGCATTCTGCCTCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGT
131 CCGATCCCAGACTTCACATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGT
* * * *
24180609 TGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCAGCCAAACCAGGGGTTGTGGCAGCAA
196 TAGCTTAGGCATACGAAGTACATTCCACATCTAAACCCCAGCCAAACCAGGGGTTATGACAGCAA
** * ** * * * *
24180674 GACCGGTAGCGAGATTGACAGCGCGTAGAGGGGGCCCGGACTGATCCCTGGCTTGCATATTATGC
261 GACCGACAGCGAGATCGACAGCGCACAGAAGGGGACCGGACTGATCCCCGGCTTGCACATTATGC
* ** ** * *
24180739 CTCTTCGGTCGGCCTCTCCAGCCGACTGAGTTCCCGTAAACTCATTTTGTGGGTTGACTTAGGCA
326 CTCTCCACTCGGCCTCTCCAGCCGACTGAGCGCCCGCAAACTCATTTCGTGGGTTGACTTAGGCA
* *
24180804 TACGGAGTTCATCCGCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGATCG
391 TACGGAGTTCATCCCCAGTCTAAACATA-GGAGTTCATTCCCAGTCTAAGATCGA-ACCAGATAG
** * * * *
24180868 AGGGTTGCGGTAGCAGGATCGGCAGCACACAGGGGGGACCGGGTCGATC-CCTAGCTTGCACATT
454 AGGGTTGCGACAGCAGGATCGGCAACACACAGGAGCGACCGGGCCGATCTCC-AGCTTGCACATT
* * * *
24180932 TTGCCTTTCCGATCGACTAAGTGCCCGCACGCTCATTTCGTGTGTTGGCTTAGGCATACAGGGTT
518 TTGCCTCTCCGACCGACTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGGGTT
24180997 GTGGCAGCAGGACCGGTACTGGGCTGATCCTCGATTTATGCATTATGCCCCTTCGACCGGCCTCT
583 GTGGCAGCAGGACCGGTACTGGGCTGATCCTCGATTTATGCATTATGCCCCTTCGACCGGCCTCT
24181062 CCGGTCGGTTGAATGCCCTCACA
648 CCGGTCGGTTGAATGCCCTCACA
** * *
24181085 CTCGTTTTGTGGGTTGACTTAGGCATAC-GACGTTCAACCCCAGTCTAAGCATACGGAGTTCATT
1 CTCGTTTCATGGGTTGACTTAGGCATACGGA-GTTCAACCCCAGTCTAACCATACAGAGTT-ATT
* * * * *
24181149 CCCAGTCTAAGATCGAACCGGATCGACGGTTACGACAGCAAGATCGATAGCTCACAGGAGAGATC
64 CCCAGTCTAAGATAGAACCGGATCGACGGTTACGACAGCAAGATCGACAGCACACA-AAGAGACC
** * * * *
24181214 GGGCCGATCTCCAG-CTTGCACATTCTGCCTCTCCGATCGGCTGAGCACCTGCATGCTCGTTTCG
128 AAGCCGATC-CCAGACTT-CACATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCG
* * **
24181278 TGGGTTAGCTTAGGCATACGGAGTACATTCCACGTCTAAACCCCAGCCGTACC-GAGGGTTATGA
191 TGGGTTAGCTTAGGCATACGAAGTACATTCCACATCTAAACCCCAGCCAAACCAG-GGGTTATGA
* * * * * * *
24181342 CAGCAGGACTGACAGCGGGATCGACAGCTCACAGAAGGGGATCGGGCTGATCCCCGGCTTGCGCA
255 CAGCAAGACCGACAGCGAGATCGACAGCGCACAGAAGGGGACCGGACTGATCCCCGGCTTGCACA
** * **
24181407 TTATGCCTCTCCAACT-GGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGAC
320 TTATGCCTCTCC-ACTCGGCCTCTCCAGCCGACTGAGCGCCCGCAAACTCATTTCGTGGGTTGAC
* **
24181471 TTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAGGAGTTCATTCCCAGTCTAAGATCGAACTG
384 TTAGGCATACGGAGTTCATCCCCAGTCTAAACATAGGAGTTCATTCCCAGTCTAAGATCGAACCA
* * * * *
24181536 GATAGAGGGTTGCGACAGCAGGATCGGTAACACGCAGGAGCGATCGTGCCGATCTCCAGCTTGCG
449 GATAGAGGGTTGCGACAGCAGGATCGGCAACACACAGGAGCGACCGGGCCGATCTCCAGCTTGCA
* * * * * *
24181601 CATTTTGCCTCTCTGGCCGATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATAC
514 CATTTTGCCTCTCCGACCGACTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAC
24181664 GGAGTACATT
Statistics
Matches: 476, Mismatches: 94, Indels: 16
0.81 0.16 0.03
Matches are distributed among these distances:
670 2 0.00
671 50 0.11
672 47 0.10
673 145 0.30
674 231 0.49
675 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (670 bp):
CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAACCCCAGTCTAACCATACAGAGTTATTCC
CAGTCTAAGATAGAACCGGATCGACGGTTACGACAGCAAGATCGACAGCACACAAAGAGACCAAG
CCGATCCCAGACTTCACATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGT
TAGCTTAGGCATACGAAGTACATTCCACATCTAAACCCCAGCCAAACCAGGGGTTATGACAGCAA
GACCGACAGCGAGATCGACAGCGCACAGAAGGGGACCGGACTGATCCCCGGCTTGCACATTATGC
CTCTCCACTCGGCCTCTCCAGCCGACTGAGCGCCCGCAAACTCATTTCGTGGGTTGACTTAGGCA
TACGGAGTTCATCCCCAGTCTAAACATAGGAGTTCATTCCCAGTCTAAGATCGAACCAGATAGAG
GGTTGCGACAGCAGGATCGGCAACACACAGGAGCGACCGGGCCGATCTCCAGCTTGCACATTTTG
CCTCTCCGACCGACTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGGGTTGTG
GCAGCAGGACCGGTACTGGGCTGATCCTCGATTTATGCATTATGCCCCTTCGACCGGCCTCTCCG
GTCGGTTGAATGCCCTCACA
Found at i:24181510 original size:25 final size:26
Alignment explanation
Indices: 24181475--24181526 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
24181465 GTTGACTTAG
24181475 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24181501 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24181526 G
1 G
24181527 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24181715 original size:367 final size:368
Alignment explanation
Indices: 24181036--24182075 Score: 1221
Period size: 367 Copynumber: 2.8 Consensus size: 368
24181026 CTCGATTTAT
* * * * * * ** * * * *
24181036 GCATTATGCCCCTTCGACCGGCCTCTCCGGTCGGTTGAATGCCCTCACACTCGTTTTGTGGGTTG
1 GCATTATGCCTCTCCAACCGGCCTCTCTGGCCGGCTGAGCGCCCCCACGCTCATTTCGTGGGTTG
*
24181101 ACTTAGGCATAC-GACGTTCAACCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA
66 ACTTAGGCATACGGA-GTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA
* * * * * *
24181165 ACCGGATCGACGGTTACGACAGCAAGATCGATAGCTCACAGGAGAGATCGGGCCGATCTCCAGCT
130 ACTGGATCGACGGTTGCGACAGCAGGATCGGTAGCACGCAGGAGAGATCGGGCCGATCTCCAGCT
* * * *
24181230 TGCACATTCTGCCTCTCCGATCGGCTGAGCACCTGCATGCTCGTTTCGTGGGTTAGCTTAGGCAT
195 TGCGCATTCTGCCTCTCCGGTCGACTGAGCACCTGCACGCTCGTTTCGTGGGTTAGCTTAGGCAT
* * ** *
24181295 ACGGAGTACATTCCACGTCTAAACCCCAG-CCGTACCGAGGGTTATGACAGCAGGACTGACAGCG
260 ACGGAGTACATTCCACGTCTAAGCCCCAGTCAG-ACCGAGGGTTATGACAGCAGGACCAACAACG
* * * *
24181359 GGATCGACAGCTCACAGAAGGGGATCGGGCTGATCCCCGGCTTGC
324 GAATCGACAGCACACAGAAGGGGATCGGGCTAATCCCCAGCTTGC
* *
24181404 GCATTATGCCTCTCCAACTGGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
1 GCATTATGCCTCTCCAACCGGCCTCTCTGGCCGGCTGAGCGCCCCCACGCTCATTTCGTGGGTTG
24181469 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATCGAA
66 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
* * * * *
24181533 CTGGATAGAGGGTTGCGACAGCAGGATCGGTAACACGCAGGAGCGATCGTGCCGATCTCCAGCTT
131 CTGGATCGACGGTTGCGACAGCAGGATCGGTAGCACGCAGGAGAGATCGGGCCGATCTCCAGCTT
* * * * * * * *
24181598 GCGCATTTTGCCTCTCTGGCCGATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATA
196 GCGCATTCTGCCTCTCCGGTCGACTGAGCACCTGCACGCTCGTTTCGTGGGTTAGCTTAGGCATA
* * * *
24181663 CGGAGTACATTCCACGTCTAAGCCCCAGTCAGACCGAAGGTTGTGGCAGCAGGACCAATAACGGA
261 CGGAGTACATTCCACGTCTAAGCCCCAGTCAGACCGAGGGTTATGACAGCAGGACCAACAACGGA
* * * ** * * *
24181728 ATTGGCAGGACGTAGAGGGGGATCGGGTTAATCCCCAGCTTGT
326 ATCGACAGCACACAGAAGGGGATCGGGCTAATCCCCAGCTTGC
* * * *
24181771 GCATTATGCCTCTCCGACCGGCCTCTCTGGTCGGCTGATCGCCCCCACGCTCGTTTCGTGGGTTG
1 GCATTATGCCTCTCCAACCGGCCTCTCTGGCCGGCTGAGCGCCCCCACGCTCATTTCGTGGGTTG
* * * *
24181836 ACTTAGGCATACGAAGTTCATCCCCAGTCTAGGCATACAGAGTTCATTCCCAGTCTAAGAT-TAG
66 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-
* * * * * * * *
24181900 ACTGAATCGATGGTTGCGGCAGTAGGATCGGTAGCATGCAAGG-GGGATAGGGCCGAAC-CCAGG
130 ACTGGATCGACGGTTGCGACAGCAGGATCGGTAGCACGC-AGGAGAGATCGGGCCGATCTCCA-G
* * *
24181963 CTTGCGCATTCTGCCTCTCCGGTCGACTGAGTACCTACACGCTCGTTTCATGGGTTAGCTTAGGC
193 CTTGCGCATTCTGCCTCTCCGGTCGACTGAGCACCTGCACGCTCGTTTCGTGGGTTAGCTTAGGC
* ** ** *
24182028 ATAGGGAGCT-CATAACTTGTCTAAGCCCCAGTCGGACCGAGGGTTATG
258 ATACGGAG-TACATTCCACGTCTAAGCCCCAGTCAGACCGAGGGTTATG
24182076 GTAACGGGAC
Statistics
Matches: 567, Mismatches: 98, Indels: 14
0.84 0.14 0.02
Matches are distributed among these distances:
367 316 0.56
368 245 0.43
369 6 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (368 bp):
GCATTATGCCTCTCCAACCGGCCTCTCTGGCCGGCTGAGCGCCCCCACGCTCATTTCGTGGGTTG
ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
CTGGATCGACGGTTGCGACAGCAGGATCGGTAGCACGCAGGAGAGATCGGGCCGATCTCCAGCTT
GCGCATTCTGCCTCTCCGGTCGACTGAGCACCTGCACGCTCGTTTCGTGGGTTAGCTTAGGCATA
CGGAGTACATTCCACGTCTAAGCCCCAGTCAGACCGAGGGTTATGACAGCAGGACCAACAACGGA
ATCGACAGCACACAGAAGGGGATCGGGCTAATCCCCAGCTTGC
Found at i:24181879 original size:26 final size:26
Alignment explanation
Indices: 24181839--24181892 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
24181829 TGGGTTGACT
24181839 TAGGCATACGAAGTTCATCCCCAGTC
1 TAGGCATACGAAGTTCATCCCCAGTC
*
24181865 TAGGCATAC-AGAGTTCATTCCCAGTC
1 TAGGCATACGA-AGTTCATCCCCAGTC
24181891 TA
1 TA
24181893 AGATTAGACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATCCCCAGTC
Found at i:24183095 original size:26 final size:26
Alignment explanation
Indices: 24183065--24183117 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24183055 GTTGACTTGG
24183065 GCATATAG-AGTTCATCCCCAGTCTAA
1 GCATA-AGAAGTTCATCCCCAGTCTAA
* *
24183091 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAGTCTAA
24183117 G
1 G
24183118 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAGTCTAA
Found at i:24183481 original size:26 final size:26
Alignment explanation
Indices: 24183445--24183497 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24183435 GTTGACTTAG
24183445 GCATACGAAGTTCA-TCCTCAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
24183471 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
24183497 G
1 G
24183498 ATTAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:24184373 original size:26 final size:26
Alignment explanation
Indices: 24184344--24184396 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24184334 GTTGACTTAG
*
24184344 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTAATTCCC-AGTCTAA
*
24184370 GCATATGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
24184396 G
1 G
24184397 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:24184728 original size:26 final size:26
Alignment explanation
Indices: 24184698--24184750 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24184688 GTTGACTTAG
*
24184698 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
24184724 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
24184750 G
1 G
24184751 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:24185089 original size:26 final size:26
Alignment explanation
Indices: 24185053--24185105 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24185043 CTTGACTTAT
*
24185053 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24185079 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24185105 G
1 G
24185106 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24185165 original size:355 final size:349
Alignment explanation
Indices: 24184303--24185310 Score: 1214
Period size: 355 Copynumber: 2.8 Consensus size: 349
24184293 GCCTCTTTAG
* * * * *
24184303 TCGGCTGAGTGCTCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCT
1 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
* * * * * *
24184368 AAGCATATGGAGTTAATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGAGGTAGCAGGATCGG
66 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGA-GGTTGCGGTAGTAGGATCGA
* * ** * * *
24184433 CAGCACGCAGGAGGGACCAAACCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCA
130 CAGCACGTAGG-GGGACCGAGTCGAT-CCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCA
* * * *
24184498 CCTTCGCATTCCTTTCGTGGGTTGGCTTAGGCATACGAACTACATTCCACGTCTAAGCCCGAGCC
193 CCTGCGC--TCATTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCGAGCC
* * *
24184563 GAACTGAGGGTTGTGGTAGTAGGACCTGCAGCGGGATCGGTGGCACGTAGAGGGGATCGGGCTGA
256 GAACTGAGGGTTGTGGCAGCAGCACCTGCAGCGGGATCGGTGGCACGTAGAGGGGATCGGGCTGA
24184628 TCCTCAGCTTACGCATTAAGCCTCTCCGA
321 TCCTCAGCTTACGCATTAAGCCTCTCCGA
* * * * * *
24184657 TCAGTTGAACGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCTCAGTCT
1 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
* *
24184722 AAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAAGGTTGCGGTAGTAGGATC-A
66 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGTTGCGGTAGTAGGATCGA
24184786 GCAGCACGTAGGGGTGACCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGC
130 -CAGCACGTAGGGG-GACCGAGTCGATCC-CGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGC
* *
24184851 ACCCATGCGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCTAGC
192 A-CC-TGCGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCGAGC
* *
24184916 CGAAAC-GAGGGTTGTGGCAGCAGCACCTGCAGCGGGATCGGTGGCACTTAGAGGGGGATCGTGC
255 CG-AACTGAGGGTTGTGGCAGCAGCACCTGCAGCGGGATCGGTGGCACGTAGA-GGGGATCGGGC
* ** * *
24184980 TGATCCT-GGACTTGTGCATTAAGCCTCTTCGG
318 TGATCCTCAG-CTTACGCATTAAGCCTCTCCGA
* * * *
24185012 TTGGCTGAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTATGCATATGGAGTTCATCCCCAGTCT
1 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
* * **
24185077 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGCGTTGCGACAGTAGGATCGA
66 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAG-GTTGCGGTAGTAGGATCGA
* * * * ** *
24185142 CAACACGTAAGGGGGATCGAGTCGATCCCTGGCTTGTGCATTCTGCCTCTCTGGCCAACTGAGCG
130 CAGCACGT-AGGGGGACCGAGTCGATCCC-GGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCA
* * * *
24185207 CCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCT
193 CCTG--CGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCGAGCC
* * * * *
24185272 GGACTGAGGGTTGGGGGAGCAAG-GCCGGCAGCGGGATCG
256 GAACTGAGGGTTGTGGCAGC-AGCACCTGCAGCGGGATCG
24185311 ACAGTTGGCT
Statistics
Matches: 562, Mismatches: 75, Indels: 33
0.84 0.11 0.05
Matches are distributed among these distances:
353 6 0.01
354 262 0.47
355 282 0.50
356 12 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (349 bp):
TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGTTGCGGTAGTAGGATCGAC
AGCACGTAGGGGGACCGAGTCGATCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCACCT
GCGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCGAGCCGAACT
GAGGGTTGTGGCAGCAGCACCTGCAGCGGGATCGGTGGCACGTAGAGGGGATCGGGCTGATCCTC
AGCTTACGCATTAAGCCTCTCCGA
Found at i:24186030 original size:159 final size:160
Alignment explanation
Indices: 24185838--24186202 Score: 402
Period size: 159 Copynumber: 2.3 Consensus size: 160
24185828 CGCACACCCA
* * * * *
24185838 TTTCGTCGGTTGGCTTAGGCATA-GAGAGCTCATTCCATGTCTAAGCCCCAG-TCGGA-TCGAGT
1 TTTCGTGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCACCAGACCGGACT-GAGG
* * * * **
24185900 GTTGTGGCAGCGGGA-CTGACAGCATGCAAAGGGGGA-TCAGGTCGATCCTTGGCTTGCACATTA
64 GTTATGGCAGCAGGATC-AACAGCACGCAAAGGGGGACT-AGGTCGATCCCCGGCTTGCACATTA
** * *
24185963 TGCCTCTTCGGTCGACTCAGCGCCCGCACGCTCG
127 TGCCTCTTCGACCGACTAAACGCCCGCACGCTCG
* * **
24185997 TTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAG-ATTAGACCGGACTGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCACCAGACCGGACTGAGGG
** * *
24186060 TTATGGCAGCAGGATCAACAGCACGCAGTGGGGGACTGGGTCGATCCCCGGCTTGCACATTCTGC
65 TTATGGCAGCAGGATCAACAGCACGCAAAGGGGGACTAGGTCGATCCCCGGCTTGCACATTATGC
* *
24186125 CTCTTCGACCGGCTAAACGCCCGCGCGCTCG
130 CTCTTCGACCGACTAAACGCCCGCACGCTCG
*
24186156 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
24186203 TACGGAGCTC
Statistics
Matches: 170, Mismatches: 28, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
158 5 0.03
159 156 0.92
160 9 0.05
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (160 bp):
TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAGGGT
TATGGCAGCAGGATCAACAGCACGCAAAGGGGGACTAGGTCGATCCCCGGCTTGCACATTATGCC
TCTTCGACCGACTAAACGCCCGCACGCTCG
Found at i:24186225 original size:26 final size:26
Alignment explanation
Indices: 24186174--24186226 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24186164 GTTGGCTTAG
* *
24186174 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCAAGTCTAA
24186200 GCATACGGAGCTCATTCCCAAG-CTAA
1 GCATACGGAGCTCATT-CCAAGTCTAA
24186226 G
1 G
24186227 ATTTTGAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCAAGTCTAA
Found at i:24187950 original size:13 final size:13
Alignment explanation
Indices: 24187932--24187956 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24187922 TGCACATTAT
24187932 GCCTCTCCGATCA
1 GCCTCTCCGATCA
24187945 GCCTCTCCGATC
1 GCCTCTCCGATC
24187957 GACTGAGCAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.48, G:0.16, T:0.24
Consensus pattern (13 bp):
GCCTCTCCGATCA
Found at i:24188026 original size:26 final size:26
Alignment explanation
Indices: 24187996--24188047 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24187986 GTTGACTTAG
24187996 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
24188022 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24188048 CATTAGGCCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24188388 original size:26 final size:26
Alignment explanation
Indices: 24188352--24188401 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
24188342 TTGACTTAGG
24188352 CATATGGAGTTCATCCCCAGTCTAAC
1 CATATGGAGTTCATCCCCAGTCTAAC
*
24188378 CATATGGAGTTCATTCCCAGTCTA
1 CATATGGAGTTCATCCCCAGTCTA
24188402 TGATCAGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (26 bp):
CATATGGAGTTCATCCCCAGTCTAAC
Found at i:24188491 original size:355 final size:351
Alignment explanation
Indices: 24187973--24188917 Score: 1013
Period size: 355 Copynumber: 2.7 Consensus size: 351
24187963 GCACCTGCAT
* * *
24187973 GCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATT
1 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* * * * * * * *
24188038 CCCAGTCTAACATTAGGCCGGATCAAAGGTTGCGGCAGCAAGATCAGTAGCACGCAGGAGGGATC
66 CCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAAGATCGGTAGCACGCAGGGGGGATC
** * * * *
24188103 GGGCTGATATTTGACTTGCGCATTCTACCTCTCCGGTCAGCTGAGCGCCCGCACGCTCGTTTCGT
131 GGGCTGAT-CCTGGCTCGCGCATTCTGCCTCTCC-GACAGCTGAGCGCCCGCACGCTCGTTTCGT
* * *
24188168 GGGTTGGCTTAGGCATACAGAGTACACTCCATGTCTAAGCTC-CAG-CTGGACCGAGGATTGTGG
194 GGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGC-CACAGTC-AGACCGAGGATTGTGG
* * * * *
24188231 TAGCA-GGATCGGTAGCG-GTATCGACAGCACGCAGAGGGGGACCGGACTGATCCCCGGCTCAC-
257 TAGCAGGGCT-GGTAACGAG-ATCGACAGCACGCAAAGGGGGACCGGACTGATCCCCGACTAACG
* * * *
24188293 ATTTTATGCCGCTTCGGCCGGCTGTGAGCTCGCA-A
320 A--TTATGCCGCTCCGACCGGC--TGAGCACCCAGA
* * * *
24188328 GCTCATTTTATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAACCATATGGAGTTCATT
1 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* * *
24188393 CCCAGTCTATGATCAGACCGGATCGAGGGTTATGGCAGCAAGATCGGTAGCACGCAGGGGGGACC
66 CCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAAGATCGGTAGCACGCAGGGGGGATC
** * * * * * *
24188458 GAACTGATCCCTGGCTCGCACATTCTGCCTCTCCGACCGATTGAGTGCCCGTATGCTCGTTTCGT
131 GGGCTGAT-CCTGGCTCGCGCATTCTGCCTCTCCGACAG-CTGAGCGCCCGCACGCTCGTTTCGT
* * * *
24188523 GGGTTGCCTTAGGCATACGGCGTACATTCCATGTCTAAGCCACAGTCAGATCGAGGGTTGTGGTA
194 GGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCACAGTCAGACCGAGGATTGTGGTA
* * *
24188588 GCAGGGCTGGTAACGAGATCGGCAGCACGCAAAGGGGGACTGGGCTGATCCCCGACTAACGATTA
259 GCAGGGCTGGTAACGAGATCGACAGCACGCAAAGGGGGACCGGACTGATCCCCGACTAACGATTA
* *
24188653 TGCCTCTCCGACCGGCTGAGCACCCATGC
324 TGCCGCTCCGACCGGCTGAGCACCCA-GA
* *
24188682 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACGAAGTTCATT
1 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
* * * * * * ** * * *
24188747 CCTAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAGTACACAAGGGGGATC
66 CCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAAGATCGGTAGCACGCAGGGGGGATC
* * * * * * * *
24188812 GGGCTAATCCTCGGCTCGCGCATTCTGCCTTTTCGACTGGCTGAGCGTCGGCACGCCCGTTTCAT
131 GGGCTGATCCT-GGCTCGCGCATTCTGCCTCTCCGAC-AGCTGAGCGCCCGCACGCTCGTTTCGT
* *
24188877 GGGTTGGCTTAGGCGTAGGGAGCT-CATTCCATGTCTAAGCC
194 GGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCC
24188918 CTAGCCGGAT
Statistics
Matches: 486, Mismatches: 93, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
352 8 0.02
353 3 0.01
354 209 0.43
355 260 0.53
356 6 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (351 bp):
GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAAGATCGGTAGCACGCAGGGGGGATC
GGGCTGATCCTGGCTCGCGCATTCTGCCTCTCCGACAGCTGAGCGCCCGCACGCTCGTTTCGTGG
GTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCACAGTCAGACCGAGGATTGTGGTAGC
AGGGCTGGTAACGAGATCGACAGCACGCAAAGGGGGACCGGACTGATCCCCGACTAACGATTATG
CCGCTCCGACCGGCTGAGCACCCAGA
Found at i:24188735 original size:26 final size:26
Alignment explanation
Indices: 24188705--24188757 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24188695 GTTGACTTAG
*
24188705 GCATACGGAGTTCATCTCC-AGTCTAA
1 GCATACGAAGTTCAT-TCCTAGTCTAA
24188731 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
24188757 G
1 G
24188758 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:24188882 original size:354 final size:351
Alignment explanation
Indices: 24187945--24189075 Score: 984
Period size: 355 Copynumber: 3.2 Consensus size: 351
24187935 TCTCCGATCA
* * * *
24187945 GCCTCTCCGATCGACTGAGCA-CC-TGCATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTT
1 GCCTCTCCGACCGGCTGAGCACCCATGC--GCTCATTTCATGGGTTGACTTAGGCATACGGAGTT
* * * * *
24188008 CATCCCCAGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAACATTAGG-CCGGATCAAAGGTTGC
64 CATCCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGA-TCGGACCGGATCGAGGGTTGT
* ** * * * *
24188071 GGCAGCAAGAT--CAGTAGCACGCAGGAGGGATCGGGCTGATATTTGACTTGCGCATTCTACCTC
127 GGCAGCAAGATCGCAGTA-CAC-AAGG-GGGATCGGGCTGATCCTCGGCTCGCGCATTCTGCCTC
* * * *
24188134 TCCG-GTCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACACTCC
189 TCCGACT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCC
* * *
24188198 ATGTCTAAGCTCCAGCTGGACCGAGGATTGTGGTAGCAGGATCGGTAGCGGTATCGACAGCACGC
253 ATGTCTAAGC-CCAGC-GGATCGAGGGTTGTGGTAGCAGGATCGGTAACGGTATCGACAGCACGC
* * *
24188263 AGAGGGGGACCGGACTGATCCCCGGCTCACATTTTAT
316 AAAGGGGGACCGGACTGATCCCCGACTAACA-TTTAT
* * * * * * * *
24188300 GCCGCTTCGGCCGGCTGTGAGCTCGCA--AGCTCATTTTATGGGTTGACTTAGGCATATGGAGTT
1 GCCTCTCCGACCGGC--TGAGCACCCATGCGCTCATTTCATGGGTTGACTTAGGCATACGGAGTT
* * * * * *
24188363 CATCCCCAGTCTAACCATATGGAGTTCATTCCCAGTCTATGATCAGACCGGATCGAGGGTTATGG
64 CATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGG
* * * * * ** *
24188428 CAGCAAGATCGGTAGCACGCAGGGGGGACCGAACTGATCC-CTGGCTCGCACATTCTGCCTCTCC
129 CAGCAAGATC-GCAGTACACAAGGGGGATCGGGCTGATCCTC-GGCTCGCGCATTCTGCCTCTCC
* ** * * * * *
24188492 GACCGATTGAGTGCCCGTATGCTCGTTTCGTGGGTTGCCTTAGGCATACGGCGTACATTCCATGT
192 GACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGT
* * *
24188557 CTAAGCCACAGTCAGATCGAGGGTTGTGGTAGCAGG-GCTGGTAACGAG-ATCGGCAGCACGCAA
257 CTAAGCC-CAG-CGGATCGAGGGTTGTGGTAGCAGGATC-GGTAACG-GTATCGACAGCACGCAA
* *
24188620 AGGGGGACTGGGCTGATCCCCGACTAACGA-TTAT
318 AGGGGGACCGGACTGATCCCCGACTAAC-ATTTAT
24188654 GCCTCTCCGACCGGCTGAGCACCCATGCGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGACCGGCTGAGCACCCATGCGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
24188719 TCTCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCA
66 TCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCA
* * * *
24188784 GCAGGATCGACAGTACACAAGGGGGATCGGGCTAATCCTCGGCTCGCGCATTCTGCCTTTTCGAC
131 GCAAGATCG-CAGTACACAAGGGGGATCGGGCTGATCCTCGGCTCGCGCATTCTGCCTCTCCGAC
* * * * * *
24188849 TGGCTGAGCGTCGGCACGCCCGTTTCATGGGTTGGCTTAGGCGTAGGGAGCT-CATTCCATGTCT
195 TGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCT
* * * *
24188913 AAGCCCTAGCCGGATCAAGGGTTGT-G--GCA-G--CGGTACCGGTAGC-ACA-CA-G--AGGGG
259 AAGCCC-AG-CGGATCGAGGGTTGTGGTAGCAGGATCGGTAACGGTATCGACAGCACGCAAAGGG
* * * * *
24188967 GGACCGGGCCGATCCCTGACTTACGTATTAT
322 GGACCGGACTGATCCCCGACTAACAT-TTAT
* * * * * * * *
24188998 ACCTCTTCGACCGGCTCAGC-GCC-TGCACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTT
1 GCCTCTCCGACCGGCTGAGCACCCATG--CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTT
*
24189061 CATTCCCAGTCTAAG
64 CATCCCCAGTCTAAG
24189076 ATCGGACCAG
Statistics
Matches: 621, Mismatches: 128, Indels: 65
0.76 0.16 0.08
Matches are distributed among these distances:
342 2 0.00
343 26 0.04
344 66 0.11
345 1 0.00
346 2 0.00
347 3 0.00
348 8 0.01
349 1 0.00
350 1 0.00
351 3 0.00
352 8 0.01
353 3 0.00
354 226 0.36
355 255 0.41
356 5 0.01
357 7 0.01
358 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (351 bp):
GCCTCTCCGACCGGCTGAGCACCCATGCGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCA
GCAAGATCGCAGTACACAAGGGGGATCGGGCTGATCCTCGGCTCGCGCATTCTGCCTCTCCGACT
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAA
GCCCAGCGGATCGAGGGTTGTGGTAGCAGGATCGGTAACGGTATCGACAGCACGCAAAGGGGGAC
CGGACTGATCCCCGACTAACATTTAT
Found at i:24189177 original size:158 final size:157
Alignment explanation
Indices: 24188731--24189233 Score: 444
Period size: 158 Copynumber: 3.2 Consensus size: 157
24188721 TCCAGTCTAA
* * * *
24188731 GCATACGAAGTTCATTCC-TAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCAGGATCGAT
* * * ** * *
24188795 AGTACACAAGGGGGA-TCGGGCTAATCCTCGGCTCGCGCATTCTGCCTTTTCGACTGGCTGAGCG
65 AGCACACAGGGGGGACT-GGGC-GATCCTCGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGCG
* * * *
24188859 TCGGCACGCCCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * ** * * * *
24188889 GCGTAGGGAGCTCATTCCATGTCTAAG-CCCTAGCCGGATCAAGGGTTGTGGCAGC-GGTACCGG
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCAGACCAAGGGTTGTGGCAGCAGG-ATCGA
* * * * * *
24188952 TAGCACACAGAGGGGGGACCGGGCCGATCC-CTGACTTACGTATTATACCTCTTCGACCGGCTCA
64 TAGCACAC--AGGGGGGACTGGG-CGATCCTC-GGCTTACGCATTCTGCCTCTTCGACCGGCTGA
* * *
24189016 GCGCCTGCACGCTCGTTTCGTGGGTTGACTTAT
125 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
24189049 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCAAGGTTTGCGGCAGCAAGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCAGGATCGAT
* *
24189113 AGCACACAGGGGGGACTGGGTCGATCCTCGGCTTACGCATTCTGCCTC-TCTGGCCGACTGAGCG
65 AGCACACAGGGGGGACTGGG-CGATCCTCGGCTTACGCATTCTGCCTCTTC-GACCGGCTGAGCG
* * * *
24189177 CCCGTACGTTCATTTCGTGGGTTGGCCTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
24189207 GCATACGGTGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
24189234 CATACGGAGC
Statistics
Matches: 267, Mismatches: 64, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
157 9 0.03
158 135 0.51
159 3 0.01
160 113 0.42
161 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCAGGATCGATA
GCACACAGGGGGGACTGGGCGATCCTCGGCTTACGCATTCTGCCTCTTCGACCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24190674 original size:26 final size:26
Alignment explanation
Indices: 24190644--24190696 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24190634 GTTGACCTAG
*
24190644 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24190670 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24190696 G
1 G
24190697 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24191057 original size:26 final size:26
Alignment explanation
Indices: 24191012--24191064 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24191002 GTTGACTTAG
24191012 GCATACGGAGGTAATCCCCAGTCTAA
1 GCATACGGAGGTAATCCCCAGTCTAA
* * *
24191038 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTAATCCCCAGTCTAA
24191064 G
1 G
24191065 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGGTAATCCCCAGTCTAA
Found at i:24191537 original size:159 final size:157
Alignment explanation
Indices: 24191038--24191539 Score: 481
Period size: 159 Copynumber: 3.2 Consensus size: 157
24191028 CCCAGTCTAA
* * * *
24191038 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTACGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCACAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGTAGGATCGACA
* * * ** *
24191103 GCACGTA-GGGGGTCCGGACCGATCCTTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACC
66 GCACGTAGGGGGGACCGG-GCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* * *
24191167 CATACGCCCCTTTCGTGGGTTGGCTTAG
130 CGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * * ** * * ** *
24191195 GCATAGGGAGCTCATTC-CATGTGTTAGCCCTAG-CCGGACCGAGGGTTTTTACAGTAGGATCGG
1 GCATACGGAGTTCATTCACA-GTCTAAGATC-AGACCGGACTGAGGGTTATGGCAGTAGGATCGA
* * * * * * * * * *
24191258 TAGCACGTAGAAGGGGACTGGGCTGATCCTCGACTAGCGCATTATGCCTCTTCGGTCGGTTGGGT
64 CAGCACGTAG-GGGGGACCGGGC-GATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* * * *
24191323 GCCCGCACGCTCGTTTCATGGGTTGACTTAT
127 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * *
24191354 GCATACGGTGTTCATTCCCAGTCTAAGATCGGATCGGACTGAAGGTTGTGGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCACAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGTAGGATCGACA
*
24191419 GCACGTAGGGGGGAACCGGGTCGATCCTCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGC
66 GCACGTAGGGGGG-ACCGGG-CGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
24191484 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
24191513 GCATACGGAGTTCATTTCAC-GTCTAAG
1 GCATACGGAGTTCA-TTCACAGTCTAAG
24191540 CATACGGAGC
Statistics
Matches: 264, Mismatches: 71, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
156 2 0.01
157 51 0.19
158 8 0.03
159 196 0.74
160 7 0.03
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCACAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGTAGGATCGACA
GCACGTAGGGGGGACCGGGCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24191971 original size:26 final size:26
Alignment explanation
Indices: 24191942--24191993 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24191932 GTTGACTTAG
24191942 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
24191968 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24191994 CATCGGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24193111 original size:182 final size:182
Alignment explanation
Indices: 24192771--24193172 Score: 401
Period size: 182 Copynumber: 2.2 Consensus size: 182
24192761 TCTTCGACCG
* * * * *
24192771 GTTGAGCGCCCTCACGCTCATTTCGTGGGTTGGCTTAGACATACGGAGTACATTCCATGTCTATG
1 GTTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGACATACGAAGTACATTCCATGTCTAAG
** * * ** *
24192836 CCCCAGTCGGACCGAGGGTTGTGATAGCAAGACCGACAGCAGGATCGGTAGCACGTAGAAGGGGA
66 CCCCAACCGGACCGAGGGTTGTGACAACAAGACCGACAGCAGGATCGGTAGCACACAGAAGGGAA
*
24192901 TCGAACTGATCCCCGGCTTGCACATTATGCCTCTCCGGCCAGCCTCCAATCA
131 TCGAACTGATCCCAGGCTTGCACATTATGCCTCTCCGGCCAGCCTCCAATCA
* * *
24192953 GTTGAGTGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCATGTCTAAG
1 GTTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGACATACGAAGTACATTCCATGTCTAAG
* * * * ** ** *
24193018 CCCCAACCGGATCTAGGGTTGTGGCAACAGGACCGGTAGTGGGATTGGTAGCACACAG-AGGGTA
66 CCCCAACCGGACCGAGGGTTGTGACAACAAGACCGACAGCAGGATCGGTAGCACACAGAAGGG-A
** * * * * * * **
24193082 ATCGGGCTGATCCTAGGCTTTCGCATTATGTCTATCCGACCGACCGACCTCTCCGGTCA
130 ATCGAACTGATCCCAGGCTTGCACATTATGCCTCTCCG---G-CC-AGC-CTCCAATCA
* *
24193141 GCTGAGCACCCGCACACTCATTTCATGGGTTG
1 GTTGAGCGCCCGCACACTCATTTCATGGGTTG
24193173 ACCTAGGCAT
Statistics
Matches: 174, Mismatches: 39, Indels: 8
0.79 0.18 0.04
Matches are distributed among these distances:
181 4 0.02
182 130 0.75
185 1 0.01
186 2 0.01
187 2 0.01
188 35 0.20
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (182 bp):
GTTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGACATACGAAGTACATTCCATGTCTAAG
CCCCAACCGGACCGAGGGTTGTGACAACAAGACCGACAGCAGGATCGGTAGCACACAGAAGGGAA
TCGAACTGATCCCAGGCTTGCACATTATGCCTCTCCGGCCAGCCTCCAATCA
Found at i:24193842 original size:157 final size:158
Alignment explanation
Indices: 24193492--24193877 Score: 438
Period size: 157 Copynumber: 2.4 Consensus size: 158
24193482 ACGGCCTTTT
* * *
24193492 CGATCGGCTAAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCTAG
1 CGATCGGCTAAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * * ** *
24193557 TCTAAGATCAGATCAGATCGAGTGTTCTGGCAATAGGATCGGTAGCACGTAGGGGGGGTCAGGCC
66 TCTAAGATCAAACCAGACCGAGAGTTCTAGCAATAGGATCGGTAGCACGCAAAGGGGATCAGGCC
* *
24193622 GATCCCTGGCTTGTGCATTATGCCTCTT
131 GATCCCTGGCTTGTACATTATGCCTCTC
* * * * * * *
24193650 CGGTCAGCTCAGTGCCTGAACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAG
1 CGATCGGCTAAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * *
24193715 TCTAAGATCAAACCAGACCGAGAGTTGTAGCAGTA-GATTGAG-AGCACGCAAAGGGGATCGGGT
66 TCTAAGATCAAACCAGACCGAGAGTTCTAGCAATAGGATCG-GTAGCACGCAAAGGGGATCAGGC
*
24193778 CGAT-CCTCGGCTTGTACATTTTGCCTCTC
130 CGATCCCT-GGCTTGTACATTATGCCTCTC
* * * *
24193807 CGATCGGCTGAGTGCCCGTACGCTCGTTTTGTGGGTTGGCTTAGGCATATGGAGTTCATT-CCAT
1 CGATCGGCTAAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-
24193871 GTCTAAG
65 GTCTAAG
24193878 CATACGGAGC
Statistics
Matches: 188, Mismatches: 37, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
156 6 0.03
157 98 0.52
158 84 0.45
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.28
Consensus pattern (158 bp):
CGATCGGCTAAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCAAACCAGACCGAGAGTTCTAGCAATAGGATCGGTAGCACGCAAAGGGGATCAGGCC
GATCCCTGGCTTGTACATTATGCCTCTC
Found at i:24194111 original size:13 final size:12
Alignment explanation
Indices: 24194076--24194107 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
24194066 GTGCTGTTAC
24194076 TTGGCCCCTATA
1 TTGGCCCCTATA
24194088 TTGGCCCCTATA
1 TTGGCCCCTATA
24194100 TTGGCCCC
1 TTGGCCCC
24194108 CTATCCCTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.12, C:0.38, G:0.19, T:0.31
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:24194621 original size:26 final size:26
Alignment explanation
Indices: 24194585--24194637 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24194575 GTTGACTTAG
24194585 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24194611 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24194637 G
1 G
24194638 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24194838 original size:12 final size:12
Alignment explanation
Indices: 24194819--24194848 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
24194809 AAGGGTTGTT
24194819 GCAGCAGGACCG
1 GCAGCAGGACCG
*
24194831 GTAGCAGGACCG
1 GCAGCAGGACCG
24194843 GCAGCA
1 GCAGCA
24194849 CGTAGAGGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.27, C:0.30, G:0.40, T:0.03
Consensus pattern (12 bp):
GCAGCAGGACCG
Found at i:24195477 original size:26 final size:26
Alignment explanation
Indices: 24195426--24195478 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24195416 GTTGGCTTAG
* *
24195426 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATGGCTAA
24195452 GCATACGGAGCTCATTCCCA-GGCTAA
1 GCATACGGAGCTCATT-CCATGGCTAA
24195478 G
1 G
24195479 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATGGCTAA
Found at i:24196185 original size:26 final size:26
Alignment explanation
Indices: 24196149--24196201 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24196139 GTTGACTTAG
*
24196149 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
24196175 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24196201 G
1 G
24196202 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24196676 original size:26 final size:26
Alignment explanation
Indices: 24196625--24196677 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24196615 GTTGGCTTAG
* *
24196625 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATGGCTAA
24196651 GCATACGGAGCTCATTCCCA-GGCTAA
1 GCATACGGAGCTCATT-CCATGGCTAA
24196677 G
1 G
24196678 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATGGCTAA
Found at i:24198499 original size:26 final size:26
Alignment explanation
Indices: 24198470--24198530 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
24198460 GTTGACTTTG
* *
24198470 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCAAGTCTAA
*
24198496 GCATACGGACTTCATTCCAAGTCTAA
1 GCATACGGACTTCATCCCAAGTCTAA
24198522 G-AT-CGGACT
1 GCATACGGACT
24198531 GGATCGAGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 6 0.19
25 2 0.06
26 24 0.75
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCATCCCAAGTCTAA
Found at i:24199197 original size:355 final size:354
Alignment explanation
Indices: 24198431--24200624 Score: 2552
Period size: 355 Copynumber: 6.2 Consensus size: 354
24198421 GTCTCTGGTT
** ** *
24198431 GACTGAGCGCCCGCATGCTCGTTTTGTGGGTTGACTTTGGCATACGGAGTTCATCCCCAGTCTAA
1 GACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * *
24198496 GCATACGGACTTCATTCCAAGTCTAAGATCGGA-CTGGATCGAGGGTTGCGGTAGTAGGATCGAC
66 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATC-GGATCGAGGGTTGCGGTAGTAGGATCGAC
* * * * * ** * *
24198560 AGCATGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGTGTCTCCGACCGGCTGAGTGC
130 AGCACGCAGGGGGAACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGC
** * *
24198625 CCGCATGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTACATT-CATGTCTAAGCCCCAGTCG
195 CCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCG
* ** * * ** * *
24198689 GACTGAGGGTTGTGGCAATAGGACCAGCAGTAGGATCGGTAGCACGCAGAGAGGGACCGGGCTGA
260 GACCGAGGGTTGTGGCAGCAGGACCGGCAG-CGGATCGACAGCACGCAGAGGGGGACCGAGCTGA
*
24198754 TCTCTGGCTTAGGCATTATGCCTCTCCGGCC
324 TCTCTGGCTTGGGCATTATGCCTCTCCGGCC
* * * * * * *
24198785 GACTAATCACCTGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTGA
1 GACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * *
24198850 GCATACGGAGTTCATTCCTAGTCTAAGATTAGATCGGATCGAGGTTTACGGCAGTAGGATC-AGC
66 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGTAGGATCGA-C
* *
24198914 AGCACGCAGGGGGAACCGAGCCGATCCCCGACTTGTGGATTCTGCCTCTCCGACTGGCTGAGCGC
130 AGCACGCAGGGGGAACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGC
* * *
24198979 CCGTACACTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTACATTCCATATCTAAGCCCCAGTCG
195 CCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCG
* *
24199044 GACCGTGGGTTGTGGCAGCAGGACCGGCAGTGGTATCGACAGCACGCAGAGGGGGACCGAGCTGA
260 GACCGAGGGTTGTGGCAGCAGGACCGGCAGCGG-ATCGACAGCACGCAGAGGGGGACCGAGCTGA
*
24199109 TCTTTGGCTTGGGCATTATGCCTCTCCGGCC
324 TCTCTGGCTTGGGCATTATGCCTCTCCGGCC
* * * *
24199140 GACTGAGTGCCCGTACACTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAG
1 GACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * *
24199205 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAATAGGATCGACA
66 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGTAGGATCGACA
* * * * * * *
24199270 GTACGCAGGGCGAACCGAGCCGGTCCCC-AGCTTACGCATTCTGCCTCTCC-AGCCGGTTGGGCG
131 GCACGCAGGGGGAACCGAGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGA-CTGGCTGAGCG
* * *
24199333 CCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCC
194 CCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTC
** * * * * *
24199398 GGACTAAGGGTTGTGGCAGCAGGACCGGTAGCGTGATCGACAGCACGTAGAAGGGGACTGAGCTA
259 GGACCGAGGGTTGTGGCAGCAGGACCGGCAGCG-GATCGACAGCACGCAGAGGGGGACCGAGCTG
** **
24199463 ATC-CTCGGCTTATGCATTATGCCTCTCCGATC
323 ATCTCT-GGCTTGGGCATTATGCCTCTCCGGCC
*
24199495 GACTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
1 GACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * *
24199560 GCATACTGAGTTCATT-CTCAGTGTAAGATCGGATCAGATCGAGGGTTGCGGTAGCAGGATCGAC
66 GCATACGGAGTTCATTCCT-AGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGTAGGATCGAC
** * * *
24199624 AGCTTGTAGGGGG-ACCGGGCCGATCCCCGACTTGCGCATTTTGCCTCTCCGAAC-GGCTGAGCG
130 AGCACGCAGGGGGAACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCG-ACTGGCTGAGCG
* * * * *
24199687 CCCGCACGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTACGCCCCAGTT
194 CCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTC
* * * * * * * *
24199752 GGACCGAGGGTTGTGGCAACAGGACCGGTAGCAGGATC-AGTAGCACGTAAAAGGGGACTGGGCT
259 GGACCGAGGGTTGTGGCAGCAGGACCGGCAGC-GGATCGA-CAGCACGCAGAGGGGGACCGAGCT
* * **
24199816 GATCTCTGGCATGGGCGTTATGCCTCTCCGGTT
322 GATCTCTGGCTTGGGCATTATGCCTCTCCGGCC
** * * *
24199849 GGTTGAGCACCCACACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
1 GACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * * *
24199914 GCATACGGAGTTCATTCCTAGTCTAAGATCAAATCAGATTGAGGTTTGCGATAGTAGGATC-AGT
66 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGTAGGATCGA-C
* * * *
24199978 AGCACGCAAGGGGAACC-AGGCCAATCCCCGACTTACTCATTCTGCCTCTCCGACTGGCTGAGCG
130 AGCACGCAGGGGGAACCGA-GCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAGCG
* * **
24200042 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTACATTCCATGTCTAAGCCTTAGTC
194 CCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTC
* * * * *
24200107 GGACCGTGGGTTGTGGCAGCAGGACCAGCAGCGGGATCGGCAACACGCAGAGGGGGACCGAACTG
259 GGACCGAGGGTTGTGGCAGCAGGACCGGCAGC-GGATCGACAGCACGCAGAGGGGGACCGAGCTG
*
24200172 ATCTCTAGCTTGGGCATTATGCCTCTCCGGCC
323 ATCTCTGGCTTGGGCATTATGCCTCTCCGGCC
* * *
24200204 TG-CTGAGCGCCCGCACAGTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 -GACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * **
24200268 AGCATACAGAGTTCATTTCC-AGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAGGATCGA
65 AGCATACGGAGTTCA-TTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGTAGGATCGA
* * * * *
24200332 CAGCACGTAGGGGCG-ACC-AGGCCGGTCCCC-AGCTTGCGCATTCTGCCTCTCCGGCTAGCTGG
129 CAGCACGCAGGGG-GAACCGA-GCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGACTGGCTGA
* * *
24200394 GTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCA
191 GCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCA
* * * * * * * *
24200459 GCCAGATCGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCAATAGCATGCAGAGGGGGATCG-G
256 GTCGGACCGAGGGTTGTGGCAGCAGGACCGGCAGC-GGATCGACAGCACGCAGAGGGGGACCGAG
* * ** * *
24200523 ATTGATCCCCAGCTTGTGCATTATGCCTCTCCGGTC
320 -CTGATCTCTGGCTTGGGCATTATGCCTCTCCGGCC
* * ** * * *
24200559 GATTGAGTGCCCGCACGTTCATTTCGTGGTTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
1 GACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
24200624 G
66 G
24200625 ATCAGATCAG
Statistics
Matches: 1573, Mismatches: 238, Indels: 57
0.84 0.13 0.03
Matches are distributed among these distances:
353 3 0.00
354 501 0.32
355 1059 0.67
356 10 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (354 bp):
GACTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGTAGGATCGACA
GCACGCAGGGGGAACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGCC
CGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGG
ACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGATCGACAGCACGCAGAGGGGGACCGAGCTGATC
TCTGGCTTGGGCATTATGCCTCTCCGGCC
Found at i:24199215 original size:26 final size:26
Alignment explanation
Indices: 24199176--24199229 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
24199166 TGGGTTGACT
*
24199176 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAGTC
*
24199202 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAGTC
24199228 TA
1 TA
24199230 AGATCAGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATCCCCAGTC
Found at i:24199819 original size:709 final size:707
Alignment explanation
Indices: 24198457--24200624 Score: 2685
Period size: 709 Copynumber: 3.1 Consensus size: 707
24198447 GCTCGTTTTG
* *
24198457 TGGGTTGACTTTGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGACTTCATTCCAAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAA
* * * * * * *
24198522 GATCGGACTGGATCGAGGGTTGCGGTAGTAGGATCGACAGCATGCAGGGGGGATCGGGTCGATCC
66 GATCAGACCGGATCGAGGGTTGCGGTAGTAGGATCGACAGCACGCA-GGGGAACCGAGCCGATCC
* ** * * *
24198587 CCGACTTGCGCATTCTGTGTCTCCGACCGGCTGAGTGCCCGCATGCTCATTTCGTGGGTTGGCTT
130 CCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* **
24198652 AGGCATATGGAGTACATT-CATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAATAGGACCAG
195 AGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCAG
* * *
24198716 CAGTAGGATCGGTAGCACGCAG-AGAGGGACCGGGCTGATCTCTGGCTTAGGCATTATGCCTCTC
260 CAG-CGGATCGGCAGCACGCAGAAG-GGGACCGAGCTGATCTCTGGCTTAGGCATTATGCCTCTC
* * * * *
24198780 CGGCCGACTAATCACCTGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAA
323 CGGCCGACTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
* * * * *
24198845 TCTGAGCATACGGAGTTCATTC-CTAGTCTAAGATTAGATCGGATCGAGGTTTACGGCAGTAGGA
388 TCTAAGCATACAGAGTTCATTCTC-AGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGTAGGA
* * * *
24198909 TC-AGCAGCACGCAGGGGGAACCGAGCCGATCCCCGACTTGTGGATTCTGCCTCTCCGACTGGCT
452 TCGA-CAGCACGTAGGGGG-ACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCT
* * *
24198973 GAGCGCCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTACATTCCATATCTAAGCCC
515 GAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCC
* * * *
24199038 CAGTCGGACCGTGGGTTGTGGCAGCAGGACCGGCAG-TGGTATC-GACAGCACGCAGAGGGGGAC
580 CAGTCGGACCGAGGGTTGTGGCAGCAGGACCGGTAGCAGG-ATCAG-TAGCACGCAGAGGGGGAC
* * * * * * *
24199101 CGAGCTGATCTTTGGCTTGGGCATTATGCCTCTCCGGCCGACTGAGTGCCCGTACACTCGTTTCT
643 TGGGCTGATCTCTGGCTTGGGCATTATGCCTCTCCGGTCGATTGAGTGCCCGCACACTCATTTCT
* * *
24199166 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAGGCATACAGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAA
* * *
24199231 GATCAGACCGGATCGAGGGTTGCGGTAATAGGATCGACAGTACGCAGGGCGAACCGAGCCGGTCC
66 GATCAGACCGGATCGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGGG-GAACCGAGCCGATCC
* * *
24199296 CC-AGCTTACGCATTCTGCCTCTCC-AGCCGGTTGGGCGCCCGCACACTCGTTTCGTGGGTTGGC
130 CCGA-CTTACGCATTCTGCCTCTCCGA-CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGC
* * * *
24199359 TTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCCGGACTAAGGGTTGTGGCAGCAGGACC
193 TTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACC
* * * * * * *
24199424 GGTAGCGTGATCGACAGCACGTAGAAGGGGACTGAGCTAATC-CTCGGCTTATGCATTATGCCTC
258 AGCAGCG-GATCGGCAGCACGCAGAAGGGGACCGAGCTGATCTCT-GGCTTAGGCATTATGCCTC
**
24199488 TCCGATCGACTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
321 TCCGGCCGACTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
* * * * * *
24199553 AGTCTAAGCATACTGAGTTCATTCTCAGTGTAAGATCGGATCAGATCGAGGGTTGCGGTAGCAGG
386 AGTCTAAGCATACAGAGTTCATTCTCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGTAGG
** *
24199618 ATCGACAGCTTGTAGGGGGACCGGGCCGATCCCCGACTTGCGCATTTTGCCTCTCCGAAC-GGCT
451 ATCGACAGCACGTAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCG-ACTGGCT
* * * *
24199682 GAGCGCCCGCACGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTACGCCC
515 GAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCC
* * * * *
24199747 CAGTTGGACCGAGGGTTGTGGCAACAGGACCGGTAGCAGGATCAGTAGCACGTAAAAGGGGACTG
580 CAGTCGGACCGAGGGTTGTGGCAGCAGGACCGGTAGCAGGATCAGTAGCACGCAGAGGGGGACTG
* * * * ** * *
24199812 GGCTGATCTCTGGCATGGGCGTTATGCCTCTCCGGTTGGTTGAGCACCCACACACTCATTTCA
645 GGCTGATCTCTGGCTTGGGCATTATGCCTCTCCGGTCGATTGAGTGCCCGCACACTCATTTCT
*
24199875 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAA
* * * * * * * *
24199940 GATCAAATCAGATTGAGGTTTGCGATAGTAGGATC-AGTAGCACGCAAGGGGAACC-AGGCCAAT
66 GATCAGACCGGATCGAGGGTTGCGGTAGTAGGATCGA-CAGCACGC-AGGGGAACCGA-GCCGAT
* *
24200003 CCCCGACTTACTCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGC
128 CCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGC
* ** * *
24200068 TTAGGTATACGGAGTACATTCCATGTCTAAGCCTTAGTCGGACCGTGGGTTGTGGCAGCAGGACC
193 TTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACC
* * * * *
24200133 AGCAGCGGGATCGGCAACACGCAGAGGGGGACCGAACTGATCTCTAGCTTGGGCATTATGCCTCT
258 AGCAGC-GGATCGGCAGCACGCAGAAGGGGACCGAGCTGATCTCTGGCTTAGGCATTATGCCTCT
* * * *
24200198 CCGGCCTG-CTGAGCGCCCGCACAGTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
322 CCGGCC-GACTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
* *
24200262 AGTCTAAGCATACAGAGTTCATT-TCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGTAG
386 AGTCTAAGCATACAGAGTTCATTCT-CAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGTAG
* * * *
24200326 GATCGACAGCACGTAGGGGCGACCAGGCCGGTCCCC-AGCTTGCGCATTCTGCCTCTCCGGCTAG
450 GATCGACAGCACGTAGGGG-GACCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGACTGG
* * * *
24200390 CTGGGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGC
513 CTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGC
* * * * * *
24200455 CCCAGCCAGATCGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCAATAGCATGCAGAGGGGGA-
578 CCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGGTAGCAGGATCAGTAGCACGCAGAGGGGGAC
** * ** * **
24200519 TCGGATTGATCCCCAGCTTGTGCATTATGCCTCTCCGGTCGATTGAGTGCCCGCACGTTCATTTC
643 T-GGGCTGATCTCTGGCTTGGGCATTATGCCTCTCCGGTCGATTGAGTGCCCGCACACTCATTTC
*
24200584 G
707 T
*
24200585 TGGTTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
24200625 ATCAGATCAG
Statistics
Matches: 1241, Mismatches: 193, Indels: 49
0.84 0.13 0.03
Matches are distributed among these distances:
708 8 0.01
709 772 0.62
710 457 0.37
711 4 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (707 bp):
TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAA
GATCAGACCGGATCGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGGGGAACCGAGCCGATCCC
CGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
GGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCAGC
AGCGGATCGGCAGCACGCAGAAGGGGACCGAGCTGATCTCTGGCTTAGGCATTATGCCTCTCCGG
CCGACTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
AAGCATACAGAGTTCATTCTCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGTAGGATCGA
CAGCACGTAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGC
CCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCG
GACCGAGGGTTGTGGCAGCAGGACCGGTAGCAGGATCAGTAGCACGCAGAGGGGGACTGGGCTGA
TCTCTGGCTTGGGCATTATGCCTCTCCGGTCGATTGAGTGCCCGCACACTCATTTCT
Found at i:24199918 original size:26 final size:26
Alignment explanation
Indices: 24199888--24199940 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24199878 GTTGACTTAG
24199888 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24199914 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24199940 G
1 G
24199941 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24200279 original size:26 final size:26
Alignment explanation
Indices: 24200243--24200295 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24200233 GTTGACTTAG
*
24200243 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
**
24200269 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24200295 G
1 G
24200296 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24200961 original size:159 final size:159
Alignment explanation
Indices: 24200503--24201018 Score: 420
Period size: 159 Copynumber: 3.3 Consensus size: 159
24200493 CGGGATCAAT
* * * * ** * *** * * *
24200503 AGCATGCAGAGGGGGATCGGATTGATCCCCAGCTTGTGCATTATGCCTCTCCGGTCGATTGAGTG
1 AGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTACGCATTATGCCTCTTCAACCGACTCAGCG
* * * * *
24200568 CCCGCACGTTCATTTCGT-GGTTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCAGAT
66 TCCGCACGCTCATTTCGTGGGTTAGA-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * *
24200632 CAGACCGAGGGTTATGATAGCAGGATCGGC
130 CAGACCAAGGGTTGTGACAGCAGGATCGAC
* * * * * * *
24200662 AACACGCA-AAGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGACTGAGCG
1 AGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTACGCATTATGCCTCTTCAACCGACTCAGCG
* * * * * **
24200726 TCCGCACGCCCGTTTCGTGGGTTAGCTTAGGCATAGGGAGCTCATT-CCATGTCTAAGCCCCAG-
66 TCCGCACGCTCATTTCGTGGGTTAGATTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGA
* ** * * *
24200789 -CTGAATAGAGGGTTGTGGCAGCGGGACCGAC
129 CCAGACCA-AGGGTTGTGACAGCAGGATCGAC
* * * *
24200820 AGCATGCAGAGGGGGACCGGGTTGATCCTC-GACTTACGCATTATGCCTCTTCAACCGGCTCAGC
1 AGCACGCAGAGGGGGACCGGGTCGATCCCCAG-CTTACGCATTATGCCTCTTCAACCGACTCAGC
* * *
24200884 G-CTCGCACGCTCATTTCGTGGGTTGGATTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
65 GTC-CGCACGCTCATTTCGTGGGTTAGATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * *
24200948 CCGGACCAAGGGTTGTGACAACAGGATCGAT
129 CCAGACCAAGGGTTGTGACAGCAGGATCGAC
* * *
24200979 AGCACGCAG-GGGGGATCGGGTC-ATCCCCGGCTTGCGCATT
1 AGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTACGCATT
24201019 CTACCTTTGC
Statistics
Matches: 277, Mismatches: 69, Indels: 24
0.75 0.19 0.06
Matches are distributed among these distances:
157 20 0.07
158 121 0.44
159 129 0.47
160 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
AGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTACGCATTATGCCTCTTCAACCGACTCAGCG
TCCGCACGCTCATTTCGTGGGTTAGATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
AGACCAAGGGTTGTGACAGCAGGATCGAC
Found at i:24201684 original size:26 final size:26
Alignment explanation
Indices: 24201648--24201700 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24201638 GTTGACTTAG
*
24201648 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24201674 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24201700 G
1 G
24201701 ATTAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24202040 original size:26 final size:26
Alignment explanation
Indices: 24202003--24202055 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24201993 GTTGACTTAG
*
24202003 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
24202029 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24202055 G
1 G
24202056 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Done.