Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 243 of 402
Found at i:24202330 original size:159 final size:159
Alignment explanation
Indices: 24202093--24202532 Score: 463
Period size: 159 Copynumber: 2.8 Consensus size: 159
24202083 TAGGATCGGT
* * * * * *
24202093 AGCACGC-ACGGGGGACCGAGCCGATCCCCGGCTTGCACATTCTACCTCTCCAACCGGTTGAGCG
1 AGCACGCAACGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * * *
24202157 CCCGCGCACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACC
66 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
* * * *
24202222 GGACCGAGGGTTGTAGTAGCGGGACCGAC
131 AGACCGAGGGTTGTAGCAACAGGACCGAC
* * * * * *
24202251 AGCACGCAATGGGGGACCGGGCTGATCCCCGGCTTGCGTATTATGCCTCTTCGGCCGGCTCAGCG
1 AGCACGCAACGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * * * * **
24202316 CCCGCACGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTATGACCGGAC
66 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAAC
* * * *
24202380 CAGACTGAGGGTTGTGGCAATAGGATCGAC
130 CAGACCGAGGGTTGTAGCAACAGGACCGAC
** * * * *
24202410 AGCACGCAGGGGGGGACCTGG-TCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGGCAGAGC
1 AGCACGCAACGGGGGACCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* * * *
24202474 GACCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTGATTCCATGTCTAAGC
65 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
24202533 ATATGGAGCT
Statistics
Matches: 226, Mismatches: 52, Indels: 7
0.79 0.18 0.02
Matches are distributed among these distances:
158 11 0.05
159 212 0.94
160 3 0.01
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.21
Consensus pattern (159 bp):
AGCACGCAACGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
AGACCGAGGGTTGTAGCAACAGGACCGAC
Found at i:24203275 original size:26 final size:26
Alignment explanation
Indices: 24203239--24203291 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24203229 ATTGACTTAG
*
24203239 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
24203265 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24203291 G
1 G
24203292 ATTGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24204161 original size:26 final size:26
Alignment explanation
Indices: 24204131--24204183 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24204121 GTTGACTTAG
*
24204131 GCATAC-AGAGTTCATCCCTAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
24204157 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24204183 G
1 G
24204184 ATCAGACCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24204284 original size:892 final size:893
Alignment explanation
Indices: 24202644--24204317 Score: 2518
Period size: 892 Copynumber: 1.9 Consensus size: 893
24202634 GGAGCATCAT
* * *
24202644 CGGAGCATCACCGGAGAGCCTAACCCACGGCATTAGGGTTTTCGACAATTGGGGGGGCCAGGGGG
1 CGGAGCATCACCGGAGAGCCTAACCCACGGCATTAGGGGTTCCGACAATTGGGGGGGCCAGAGGG
* * * *
24202709 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCGTATCCCTCATC
66 TGCGCACACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCACCCTATCCCTCATC
* *
24202774 AAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTACCAGTAGCC
131 AAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAAGTTTGCTACCAGTAGCC
24202839 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTT
196 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTT
* **
24202904 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTCTACCAAATTTGGGGACA
261 TTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACCTCTACCAAATTTAAGGACA
* * *
24202969 AAACTCTTTCAAAAAAAATTTAGAAAAATCCCAAACTGCAAAAAGTTTCAAAAGTCGTGAAAAAG
326 AAACTCTTTCAAAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAGTCATGAAAAAG
* * * *
24203034 AGAAAACGGGTTGTCTTGCCACGAAACTTCACCTGAAGGCTTAGGGGACCAATGTATGAATTTAC
391 AGAAAACGAGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCAATGAATGAATTTAC
*
24203099 AAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCA
456 AAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCTTGAACCCACCTACCACCCA
* ** *
24203164 TTCGATCCTCGACTTGCGCATCCTGTCTCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGG
521 TTCGATCCCCGACTTGCGCATCCTACCTCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCATGG
* * *
24203229 ATTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCATTCTAAGAT
586 ATTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATCCCCAGTCTAAGAT
* * * *
24203294 TGAATCGGATCGAGGGTTGCTGCAGCAAAATCGACAGCACGCAGAGGGGACCAGGCCGATCCCCG
651 AGAACCGGATCGAGGGTTGCTGCAGCAAAATCGACAGCACGCAAAGGGGACCAGGCCGATCCCCC
* * * *
24203359 GCTTGCGCATTCTGCCTCTCTCGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
716 ACTTGCACATTCTACCTCTCTCGCCGACTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGG
24203424 CATACAAAGTTCATTCCATGTCTAAGCATACGGAGCTCATTACCAATCTAAGATTTTGAGGCACT
781 CATACAAAGTTCATTCCATGTCTAAGCATACGGAGCTCATTACCAATCTAAGATTTTGAGGCACT
24203489 GTGCATATGCTAGGCTGGGGCATGTGCTGGTGCCACTTTTTTTTTGCC
846 GTGCATATGCTAGGCTGGGGCATGTGCTGGTGCCACTTTTTTTTTGCC
* * * * * *
24203537 CGGAGCATCACTGGAGAGCTTAACCGACGGCATTGGGGGTTCCGACGATTGGGGGGGTC-GAGGG
1 CGGAGCATCACCGGAGAGCCTAACCCACGGCATTAGGGGTTCCGACAATTGGGGGGGCCAGAGGG
* * * *
24203601 TGCGTACACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATGTTGGCCCCCTATCGCTCATC
66 TGCGCACACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCACCCTATCCCTCATC
** * *
24203666 AAACCTCGGGAACTCA-ATCCCCCTTAAAGAGCATTTGAGATTTTATAAGTTTGCTGCCAGTAGC
131 AAACCTCGAAAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTAGAAGTTTGCTACCAGTAGC
*
24203730 CATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAACGGTCACAAAATCTTCTCCACTTCGAGTT
195 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTT
** *
24203795 TTTAGCT-AATTGTTTTTGTGCAAGCCAACCAAAATACAAGGATCACCTCTACCAATTTTAAGGA
260 TTTAGCTGAATT-TTTTTGTGCAAGCCAAAAAAAATACAAGGATCACCTCTACCAAATTTAAGGA
* ** *
24203859 CAAAACTCTTTCTAAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCAGAAA-TCATGAAA
324 CAAAACTCTTTCAAAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTCA-AAAGTCATGAAA
* *
24203923 AATAGAAAACGAGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGAATGAATT
388 AAGAGAAAACGAGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCAATGAATGAATT
24203988 TACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCTTGAACCCACCTACCAC
453 TACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCTTGAACCCACCTACCAC
* * * *
24204053 CCGTTCGATCCCCGACTTGCGCATCCTACCTTTCTTGTCGGCTGAGCGCCCGCACGCTCGTTTCA
518 CCATTCGATCCCCGACTTGCGCATCCTACCTCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCA
* *
24204118 TGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATAC-GAAGTTCATCCCCAGTCTA
583 TGGATTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAG-AGTTCATCCCCAGTCTA
* * * *** *
24204182 AGATCAG-ACCGTATCGGGGGTTG-TGGTAGCGGGATCGACAGCACGCAAAGGGGACCGGGCCGA
647 AGAT-AGAACCGGATCGAGGGTTGCT-GCAGCAAAATCGACAGCACGCAAAGGGGACCAGGCCGA
* * * * * *
24204245 TCCCCCATTTGCACATTTTACCTCTC-CAGCTGGCTGAGCGCCCGCACATTTGTTTCATGGGTTG
710 TCCCCCACTTGCACATTCTACCTCTCTC-GCCGACTGAGCGCCCGCACACTCGTTTCATGGGTTG
*
24204309 GTTTAGGCA
774 GCTTAGGCA
24204318 AACGGAGTAC
Statistics
Matches: 695, Mismatches: 79, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
891 8 0.01
892 632 0.91
893 55 0.08
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (893 bp):
CGGAGCATCACCGGAGAGCCTAACCCACGGCATTAGGGGTTCCGACAATTGGGGGGGCCAGAGGG
TGCGCACACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCACCCTATCCCTCATC
AAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAAGTTTGCTACCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACCTCTACCAAATTTAAGGACA
AAACTCTTTCAAAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTCAAAAGTCATGAAAAAG
AGAAAACGAGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCAATGAATGAATTTAC
AAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCTTGAACCCACCTACCACCCA
TTCGATCCCCGACTTGCGCATCCTACCTCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCATGG
ATTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATCCCCAGTCTAAGAT
AGAACCGGATCGAGGGTTGCTGCAGCAAAATCGACAGCACGCAAAGGGGACCAGGCCGATCCCCC
ACTTGCACATTCTACCTCTCTCGCCGACTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGG
CATACAAAGTTCATTCCATGTCTAAGCATACGGAGCTCATTACCAATCTAAGATTTTGAGGCACT
GTGCATATGCTAGGCTGGGGCATGTGCTGGTGCCACTTTTTTTTTGCC
Found at i:24204529 original size:26 final size:26
Alignment explanation
Indices: 24204499--24204551 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24204489 GTTGACTTAG
24204499 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24204525 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24204551 G
1 G
24204552 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24204796 original size:368 final size:368
Alignment explanation
Indices: 24204080--24204921 Score: 980
Period size: 368 Copynumber: 2.3 Consensus size: 368
24204070 TGCGCATCCT
* * * * *
24204080 ACCTTTCTTGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
1 ACCTCTCTGGTCGGCAGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA
* * * ** * *
24204145 TCCCTAGTCTAAGCATACGAAGTTCATCCCCAGTCTAAGATCAGACCGTATCGGGGGTTGTGGTA
66 TCCCCAGTCTAAGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCA
* * * * *
24204210 GCGGGATCGACAGCACGCAAAGGGGACCGGGCCGATCCCCCATTTGCACATTTTACCTCTCCAGC
131 GCAGGATCGACAACACGCAAAGGGGACCGGGCCGATCCCCCACTTGCACATTCTACCCCTCCAGC
* * * *
24204275 TGGCTGAGCGCCCGCACATTTGTTTCATGGGTTGGTTTAGGCAAACGGAGTACATTGCACATCTA
196 TGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCAAACGGAGTACATTCCACATCTA
* * * * *
24204340 AGCCCCAGCCGGACCGAGGGTTGTGGCAACAAGACCGGTAGCAGGATCGACAGCACGTGGAGGGA
261 AGCCCCAACCAGACCGAGGGTTGTGGCAACAAGACCGGTAACAGGATCGACAGCACGAGAAGGGA
* **
24204405 TACCAGGCTGATCCCCAGCTTGCACATTATGCCT-TTCCGGTCG
326 GACCAGGCTGATCCCCAGCTTGCACATTATGCCTCTT-CGACCG
* *
24204448 ACCTCTCTGGTCGGCAGAGCACCCGTACGCTCATTTCATGAGTTGACTTAGGCATACAGAGTTCA
1 ACCTCTCTGGTCGGCAGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA
24204513 TCCCCAGTCTAAGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCA
66 TCCCCAGTCTAAGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCA
* ** * ** *
24204578 GCAGGATCGACAACATGC-AAGGGTGATTGGGCTGATCCCCGGCTTGCGCATTCTACCCCTCC-G
131 GCAGGATCGACAACACGCAAAGGG-GACCGGGCCGATCCCCCACTTGCACATTCTACCCCTCCAG
* * * * * *
24204641 GTGGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTC
195 CT-GGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCAAACGGAGTACATTCCACATC
** * * *
24204706 TAAGCCCCAATTAGACCGAGGGTTGT-GCTAGCAAGATCGGTAAC-GAGATCGGCAGCACGCAGA
259 TAAGCCCCAACCAGACCGAGGGTTGTGGC-AACAAGACCGGTAACAG-GATCGACAGCACG-AGA
**
24204769 AGGG-GACCAGGCTGATCCCTGGCTTGCACATTATGCCTCTTCGACCG
321 AGGGAGACCAGGCTGATCCCCAGCTTGCACATTATGCCTCTTCGACCG
* ** * * *
24204816 TCCTCTCTGACCGGCTA-AGCGCCCGTCCACATGCTAATTACGTGGGTTGACTTAGGCATAC-GC
1 ACCTCTCTGGTCGGC-AGAGCGCCCGT--AC--GCTCATTTCATGGGTTGACTTAGGCATACAG-
** *
24204879 AGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTA
60 AGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCCAGTCTA
24204922 GGATTGGACC
Statistics
Matches: 400, Mismatches: 62, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
367 10 0.03
368 314 0.79
369 8 0.02
370 2 0.00
371 1 0.00
372 65 0.16
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (368 bp):
ACCTCTCTGGTCGGCAGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA
TCCCCAGTCTAAGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGCA
GCAGGATCGACAACACGCAAAGGGGACCGGGCCGATCCCCCACTTGCACATTCTACCCCTCCAGC
TGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCAAACGGAGTACATTCCACATCTA
AGCCCCAACCAGACCGAGGGTTGTGGCAACAAGACCGGTAACAGGATCGACAGCACGAGAAGGGA
GACCAGGCTGATCCCCAGCTTGCACATTATGCCTCTTCGACCG
Found at i:24205048 original size:372 final size:367
Alignment explanation
Indices: 24204116--24205105 Score: 902
Period size: 368 Copynumber: 2.7 Consensus size: 367
24204106 ACGCTCGTTT
* *
24204116 CATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATAC-GAAGTTCATCCCCAGTC
1 CATGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAG-AGTTCATCCCCAGTC
** * ** ** ** * * * * * *
24204180 TAAGATCAGACCGTATCGGGGGTTGTGGTAGCGGGATCGACAGCACGCAAAGGGGACCGGGCCGA
65 TAAGATCAGACCAAACCAAGGGTTACGACAGCAGGATCGACAACA-TCAAGGGGGATCGAGCCGA
* * * * * * * * * * ****
24204245 TCCCCCATTTGCACATTTTACCTCTCCAGCTGGCTGAGCGCCCGCACATTTGTTTCATGGGTTGG
129 TCCCCGACTTACGCATTCTACCCCTCCGGCCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGG
* * * * * *
24204310 TTTAGGCAAACGGAGTACATTGCACATCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACAAGAC
194 CTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAACAAGAC
* * * *
24204375 CGGTAGCAGGATCGACAGCACGTGGAGGGATACCAGGCTGATCCCCAGCTTGCACATTATGCCTT
259 CGGTAACAGGATCGACAGCACGAGAAGGGAGACCAGGCTGATCCCCAGCTTGCACATTATGCCTT
** ** * *
24204440 TCCGGTCGACCTCTCTGGTCGGCAGAGCACCCGTACGCTCATTT
324 TCCGACCGACCTCTCTGACCGGCAGAGCACCCGTACGCTAATTA
*
24204484 CATGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCCAGTCT
1 CATGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATCCCCAGTCT
** * * * * * * *
24204549 AAGATCAGACCGGATCAAGGGTTGCGGCAGCAGGATCGACAACATGCAAGGGTGATTGGGCTGAT
66 AAGATCAGACCAAACCAAGGGTTACGACAGCAGGATCGACAACAT-CAAGGGGGATCGAGCCGAT
* * ** * ** * *
24204614 CCCCGGCTTGCGCATTCTACCCCTCCGGTGGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGC
130 CCCCGACTTACGCATTCTACCCCTCCGGCCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGC
** * *
24204679 TTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAATTAGACCGAGGGTTGT-GCTAGCAAGAT
195 TTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAACCAGACCGAGGGTTGTGGC-AACAAGAC
* **
24204743 CGGTAAC-GAGATCGGCAGCACGCAGAAGGG-GACCAGGCTGATCCCTGGCTTGCACATTATGCC
259 CGGTAACAG-GATCGACAGCACG-AGAAGGGAGACCAGGCTGATCCCCAGCTTGCACATTATGCC
* *
24204806 TCTT-CGACCGTCCTCTCTGACCGGCTA-AGCGCCCGTCCACATGCTAATTA
322 T-TTCCGACCGACCTCTCTGACCGGC-AGAGCACCCGT--AC--GCTAATTA
* * * *
24204856 CGTGGGTTGACTTAGGCATAC-GCAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCCCAGTC
1 CATGAGTTGACTTAGGCATACAG-AGTTCATCCCCAGTCTAAGCATACAGAGTTCATCCCCAGTC
* ** * *
24204920 TAGGATTGGACCAAACCGAGGGTTACGACAGCAGGATCGACAGCACAT-AGGGGGGATCGAGCCG
65 TAAGATCAGACCAAACCAAGGGTTACGACAGCAGGATCGACA--ACATCAAGGGGGATCGAGCCG
* ** * **
24204984 ATCCCTGACTTACGCATTCTGTCTCTTTGGCCGACTGAGCACCCGCACGCCCGTTTCATGGGTTG
128 ATCCCCGACTTACGCATTCTACCCCTCCGGCCGACTGAGCACCCGCACGCCCGTTTCATGGGTTG
* * ** *
24205049 GCTTAGGCATAGGGAGCT-CATTCCATGTCTAAG-CTAAACTCGGACCGAGGGTTGTGG
193 GCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCCAAC-CAGACCGAGGGTTGTGG
24205106 TAGCGAGACC
Statistics
Matches: 510, Mismatches: 95, Indels: 29
0.80 0.15 0.05
Matches are distributed among these distances:
367 3 0.01
368 287 0.56
369 9 0.02
370 2 0.00
371 4 0.01
372 199 0.39
373 2 0.00
374 4 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (367 bp):
CATGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATCCCCAGTCT
AAGATCAGACCAAACCAAGGGTTACGACAGCAGGATCGACAACATCAAGGGGGATCGAGCCGATC
CCCGACTTACGCATTCTACCCCTCCGGCCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGGCT
TAGGCATACGGAGTACATTCCACGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAACAAGACCG
GTAACAGGATCGACAGCACGAGAAGGGAGACCAGGCTGATCCCCAGCTTGCACATTATGCCTTTC
CGACCGACCTCTCTGACCGGCAGAGCACCCGTACGCTAATTA
Found at i:24205279 original size:159 final size:157
Alignment explanation
Indices: 24205025--24205397 Score: 380
Period size: 159 Copynumber: 2.4 Consensus size: 157
24205015 CGACTGAGCA
* * * * *
24205025 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCTAAACTC
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATAAACTC
** * ** * *
24205090 GGACCGAGGGTTGTGGTAGCGAGACCGACAGCATGCAGAGGGGGACCGGGTTGATCCTC-GACTT
66 GGACCGAGGGTTCAGCTAGCGAGACCGACAGCACACAG-GGGGGACCGGGTCGATCCCCAG-CTT
* * *
24205154 GCACATTATGCCTCT-TCGACCGGTTCAGCC
129 GCACATT-CGCCTCTCT-GACCAGCTCAGCC
* * *
24205184 CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCAGAC
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGAT-AAAC
** * *
24205248 -CGGACCGAGGGTTACAGCT-GC-AGGATGGACAGGACACAGGGGGGATCGGGTCGATCCCCAGC
64 TCGGACCGAGGGTT-CAGCTAGCGA-GACCGACAGCACACAGGGGGGACCGGGTCGATCCCCAGC
* * *
24205310 TTGCACATTCGCCTCTCTGGCCAGCTGAGCG
127 TTGCACATTCGCCTCTCTGACCAGCTCAGCC
* * *
24205341 CCCGCATGCTAGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
24205398 CATACATAGC
Statistics
Matches: 177, Mismatches: 30, Indels: 16
0.79 0.13 0.07
Matches are distributed among these distances:
156 3 0.02
157 62 0.35
158 29 0.16
159 75 0.42
160 8 0.05
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATAAACTC
GGACCGAGGGTTCAGCTAGCGAGACCGACAGCACACAGGGGGGACCGGGTCGATCCCCAGCTTGC
ACATTCGCCTCTCTGACCAGCTCAGCC
Found at i:24205510 original size:11 final size:11
Alignment explanation
Indices: 24205494--24205526 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
24205484 CCCGGGGCAC
24205494 CATCGTCGGAG
1 CATCGTCGGAG
*
24205505 CATCGTTGGAG
1 CATCGTCGGAG
24205516 CATCGTCGGAG
1 CATCGTCGGAG
24205527 AGCTAAATCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.24, G:0.36, T:0.21
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:24205871 original size:26 final size:26
Alignment explanation
Indices: 24205835--24205887 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24205825 GTTGACTTAG
24205835 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24205861 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24205887 G
1 G
24205888 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24206386 original size:26 final size:26
Alignment explanation
Indices: 24206334--24206386 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24206324 GTTGGCTTAG
* * *
24206334 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGCTCATTCCCAATATAA
24206360 GCATACGGAGCTCATTCCCAATATAA
1 GCATACGGAGCTCATTCCCAATATAA
24206386 G
1 G
24206387 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAATATAA
Found at i:24207092 original size:26 final size:26
Alignment explanation
Indices: 24207056--24207106 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24207046 TGACTTAGGA
*
24207056 ATATGGAGTTCATCCCCAGTCTAAGC
1 ATATGAAGTTCATCCCCAGTCTAAGC
*
24207082 ATATGAAGTTCATTCCCAGTCTAAG
1 ATATGAAGTTCATCCCCAGTCTAAG
24207107 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATATGAAGTTCATCCCCAGTCTAAGC
Found at i:24207451 original size:26 final size:26
Alignment explanation
Indices: 24207421--24207472 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24207411 GTTGACTTAG
*
24207421 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
24207447 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24207473 AATCGGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24207724 original size:367 final size:356
Alignment explanation
Indices: 24207000--24208025 Score: 1111
Period size: 367 Copynumber: 2.8 Consensus size: 356
24206990 GCTTGGGCAT
* * * * *
24207000 CCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGTGTTGACTTAGGAATATGGAGT
1 CCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGT
* * *
24207065 TCATCCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCA
66 TCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAAATCAGAC-GGATCGAGGGTTGCG
** * **
24207130 ACAACAGGATCGACAGCACGCAGGGGGGACCGGGCCGAT-CTCCGGCTTGCGCATTCTGCCTCTC
130 ACAGTAGGATCGACAGCA-GCAGGGGGGACCGGGCCGATCCT-CGACTTGTACATTCTGCCTCTC
* *
24207194 CGGCCGGCTGAGCGCCCGTACGCTCATTTTGTGGGTTGGCTTAGGCATACGAAGTACATTCCATG
193 CGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGT-CATTCCATG
* * * * * ** * *
24207259 TCTAGGCCCTAGCC-GAACAGAGGGTTGTGACCGCATGG-CCAACAGCGGGATCGGCAACACGCA
257 TCTAAGCCCCAGCCGGAAC-GAGGGTTGTGGCAGCA-GGATCGGCAACGAGATCGGCAACACGCA
* * ** * * *
24207322 GAGGGGGACTGGGTTGATCCCCGGCTTGCGCATTATG
320 AAGGGGGACCGGACTGATACCCGACTTACGCATTATG
* *
24207359 ACTCTCCACCGGCCTCTCTGGTCGGCTGTGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCA
1 -C-CT------GCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* *
24207424 TACGTAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAAATCGGATCGGATCGA
58 TACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAAATCAGA-CGGATCGA
**
24207489 GGGTTGCGACAGTAGGATCGGTAGCATGCAGGGGGGACCGGGCCGATCCTCGACTTGTACATTCT
122 GGGTTGCGACAGTAGGATCGACAGCA-GCAGGGGGGACCGGGCCGATCCTCGACTTGTACATTCT
* * * *
24207554 ACCTTTCCGGCCAGCTGAGCGCTCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTGCA
186 GCCTCTCCGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGT-CA
* * * *
24207619 TTCCACGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCAGGATCGGCAACGAGATCGGTAGC
250 TTCCATGTCTAAGCCCCAGCCGGAACGAGGGTTGTGGCAGCAGGATCGGCAACGAGATCGGCAAC
* * * *
24207684 ATGTAAAGGGTGACCGGACTGATACCCGACTTATGCATTATG
315 ACGCAAAGGGGGACCGGACTGATACCCGACTTACGCATTATG
*
24207726 CCT--CTC-C-GGTTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGT
1 CCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGT
* * * * *
24207787 TCATCCCTAGTCTAAGCATACGAAGTTCGTTCCCAGTC-AAAGATCAGACCGGACCGACGGTTAC
66 TCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAA-ATCAGA-CGGATCGAGGGTTGC
* * *
24207851 GACAGTAGGATCAACAGTTCA-CAGGGGGGACCGAGCCGATCCTCGAC-T-TACGTATTTTGCCT
129 GACAGTAGGATCGACAG--CAGCAGGGGGGACCGGGCCGATCCTCGACTTGTAC--ATTCTGCCT
* * * * * * * *
24207913 CTCTGACCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCC
190 CTCCGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAG-TCATTCC
* * * * *
24207978 ATGCCTAAGCCCCAGTCGGACCGAGTGTTGTGGCAGCGGGGATCGGCA
254 ATGTCTAAGCCCCAGCCGGAACGAGGGTTGTGGCAGC-AGGATCGGCA
24208026 GCACGCAGAG
Statistics
Matches: 564, Mismatches: 84, Indels: 40
0.82 0.12 0.06
Matches are distributed among these distances:
353 3 0.01
354 4 0.01
355 233 0.41
356 11 0.02
357 5 0.01
360 1 0.00
361 2 0.00
365 2 0.00
366 3 0.01
367 294 0.52
368 6 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (356 bp):
CCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGT
TCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAAATCAGACGGATCGAGGGTTGCGA
CAGTAGGATCGACAGCAGCAGGGGGGACCGGGCCGATCCTCGACTTGTACATTCTGCCTCTCCGG
CCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTCATTCCATGTCTA
AGCCCCAGCCGGAACGAGGGTTGTGGCAGCAGGATCGGCAACGAGATCGGCAACACGCAAAGGGG
GACCGGACTGATACCCGACTTACGCATTATG
Found at i:24208442 original size:184 final size:184
Alignment explanation
Indices: 24208128--24208472 Score: 467
Period size: 184 Copynumber: 1.9 Consensus size: 184
24208118 CTGCATATGG
* * * *
24208128 AGTTCATTCCCAGTCGAAGAGTGGACCAGATCGAGGGTTACGGTAGTAGGATCGACAGCACGCAG
1 AGTTCATTCCCAATCGAAGAGTGGACCAGATCGAGGGTTACCGCAGCAGGATCGACAGCACGCAG
* * * * * * * **
24208193 GGGGGACCGGTTTGATCCTCAACTTGTGCATTTTGCCTCTCCAGCCGGTTGAGCGCCTGCACGCT
66 GGGGGACCGGGTCGATCCCCAACTTATGCATTTTGCCTCTCCAGCAGGCTAAGCGCCCACACGCT
*
24208258 CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGAATACGA
131 CGTTTCATAGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGAATACGA
* * *
24208312 AGTTCATTCCCAATCTAAGA-TCGGACCGGATCGAGGGTTGCCGCAGCAGGATCGACAGCACGCA
1 AGTTCATTCCCAATCGAAGAGT-GGACCAGATCGAGGGTTACCGCAGCAGGATCGACAGCACGCA
* * *
24208376 GGGGGGACTGGGTCGATCCCCAACTTATGCATTTTGCCTCTCCGGTAGGCTAAGCGCCCACACGC
65 GGGGGGACCGGGTCGATCCCCAACTTATGCATTTTGCCTCTCCAGCAGGCTAAGCGCCCACACGC
* * *
24208441 TCGTTTCGTAGGTTGGCTTAGGCATACGGAGT
130 TCGTTTCATAGGTTGACTTAGGCATACAGAGT
24208473 ACATTCCACG
Statistics
Matches: 137, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
183 1 0.01
184 136 0.99
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (184 bp):
AGTTCATTCCCAATCGAAGAGTGGACCAGATCGAGGGTTACCGCAGCAGGATCGACAGCACGCAG
GGGGGACCGGGTCGATCCCCAACTTATGCATTTTGCCTCTCCAGCAGGCTAAGCGCCCACACGCT
CGTTTCATAGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGAATACGA
Found at i:24208696 original size:26 final size:26
Alignment explanation
Indices: 24208646--24208698 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24208636 GTTGACTTAG
* *
24208646 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACAGAGTTCATCCTCAATCTAA
24208672 GCATACAGAGTTCATTCC-CAATCTAA
1 GCATACAGAGTTCA-TCCTCAATCTAA
24208698 G
1 G
24208699 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCTCAATCTAA
Found at i:24209007 original size:367 final size:367
Alignment explanation
Indices: 24208227--24209249 Score: 1193
Period size: 367 Copynumber: 2.8 Consensus size: 367
24208217 TGTGCATTTT
* ** *
24208227 GCCTCTCCAGCCGGTTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
1 GCCTCTCCAGTCGGTTGAGAACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
* * *
24208292 TCCCCAGTCTAAGAATACGAAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCCGCA
66 TCCCCAGTCTAAGCATACG-AGTTCATTCCCAATCTAAGATCGGATCGGATCGAGGGTTGCGGCA
* * * ** * *
24208357 GCAGGATCGACAGCACGCAGGGGGGACTGGGTCGATCCCCAACTTATGCATTTTGCCTCTCCGGT
130 GTAGGATCGACAGCACGCAGGGGGGATTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGC
* * * ** *
24208422 AGGCTAAGCGCCCACACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTA
195 CGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTA
** ** *
24208487 AGCCCCAGTTGGACCGAGGGTTGTCACAGTAGGACCGACAGCGAGATCGATAGCACATAGAGGAG
260 AGCCCCAGCCGGACCGAGGGTTGTGGCAGTAGGACCGACAGCGAGATCGACAGCACATAGAGGAG
* * *
24208552 GATAGGGCTGATCCTCGACTTACGCATTATTCCTCTTCGATCG
325 GACAGGGCTGATCCTCGACTTACACATTATGCCTCTTCGATCG
* ** * * * * *
24208595 GCCTTTCTGGTCAGCTGA-ACACCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTC
1 GCCTCTCCAGTCGGTTGAGA-ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTC
* * * *
24208659 ATCCTCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATTGGATCGGATCAAAGGTTGCGGC
65 ATCCCCAGTCTAAGCATAC-GAGTTCATTCCCAATCTAAGATCGGATCGGATCGAGGGTTGCGGC
* * *
24208724 AGTAGGATCGACAGCACGTAGGGGGGATTGGGTCGATCCCCGACTTGCACATTCTACCTCTCCGG
129 AGTAGGATCGACAGCACGCAGGGGGGATTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGG
*
24208789 CCGGTTGAGCGCCTGC-CGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCT
194 CCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCT
** * *
24208853 AAGCCCCAGCCGGACCGAGGGTTGTGGCAGTAGGACCGGTAGTGAGATCGGCAGCACATAGA-GA
259 AAGCCCCAGCCGGACCGAGGGTTGTGGCAGTAGGACCGACAGCGAGATCGACAGCACATAGAGGA
* * *
24208917 GGGACCGGGCTGATCGC-CGACTTGCACATTATGCCT-TTCTG-GCTG
324 -GGACAGGGCTGATC-CTCGACTTACACATTATGCCTCTTC-GATC-G
*
24208962 GCCTCTCCAGTCGGTTGAGAACCCGCACGCTCGTTTCATGGGTTGACTTAGACATACAGAGTTCA
1 GCCTCTCCAGTCGGTTGAGAACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
* * * * * *
24209027 TCCCCAATCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGAATCGGATCGAGGGTTGTGGCA
66 TCCCCAGTCTAAGCATA-CGAGTTCATTCCCAATCTAAGATCGGATCGGATCGAGGGTTGCGGCA
* * * * ** * *
24209092 GTAGGATC-AGTAGCATGCAAGGTGGATCAGG-CTGATCCTCGGCTTGCGCATTCTGCCTCTCCG
130 GTAGGATCGA-CAGCACGCAGGGGGGATTGGGTC-GATCCCCGACTTGCGCATTCTGCCTCTCCG
* * * * * * *
24209155 GCCGATTGAGCCCCTGCATGCCCGTTTCGAGGGTTGGTTTAGGCATAGGGAGCT-CATTCC-CTG
193 GCCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCAC-G
* *
24209218 TCTAAGCCCCAACCAGACCGAGGGTTGTGGCA
256 TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCA
24209250 ACGGAATCGA
Statistics
Matches: 551, Mismatches: 91, Indels: 26
0.82 0.14 0.04
Matches are distributed among these distances:
366 8 0.01
367 301 0.55
368 240 0.44
369 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (367 bp):
GCCTCTCCAGTCGGTTGAGAACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
TCCCCAGTCTAAGCATACGAGTTCATTCCCAATCTAAGATCGGATCGGATCGAGGGTTGCGGCAG
TAGGATCGACAGCACGCAGGGGGGATTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCC
GGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAA
GCCCCAGCCGGACCGAGGGTTGTGGCAGTAGGACCGACAGCGAGATCGACAGCACATAGAGGAGG
ACAGGGCTGATCCTCGACTTACACATTATGCCTCTTCGATCG
Found at i:24210234 original size:159 final size:156
Alignment explanation
Indices: 24209754--24210235 Score: 452
Period size: 159 Copynumber: 3.0 Consensus size: 156
24209744 TCATCCCCAG
* * * * *
24209754 TCTAAGATTGGACCGGATCGAGGGTTGCGGCAGCAGGATTGACAGTACACAA-GGGGGATCGGGC
1 TCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGGATCGGGT
* ** * * * *
24209818 CGATCCCCGACTTGCAAATTCTGCCTCTCCGGTCGACTGAACGCCCGCACGCCCGTTTTGTGGGT
66 CGATCCCAG-CTTGCGCATTCTACCTCTCCGGTCGGCTGAACGCCCGCACGCTCGTTTCGTGGGT
* * *
24209883 TGGCTTAGGCATAGGGAGCTCATTCCATG
130 T-GCTTA-GCATACGGAGTTCATTCCATA
* ** * * * * * ** *
24209912 TCTAAG-CCCCAGTCGGATTGAGGGTTGTGGCAGCGGGACCGGTAGCATGC-AGAGGGGGATCGG
1 TCTAAGATCGGA-CCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAG-GGGGGATCGG
* * * ** * *
24209975 GTCGATCCCCAGCTTGCGCATTATTCCCCTTTGGTCGGCTCAACGCCCGCACGCTCGTTTCGTAG
64 GTCGAT-CCCAGCTTGCGCATTCTACCTCTCCGGTCGGCTGAACGCCCGCACGCTCGTTTCGTGG
*
24210040 GTTGACTTATGCATACGGAGTTCATTCCCA-C
128 GTTG-CTTA-GCATACGGAGTTCATT-CCATA
* * * *
24210071 TCTAAGATCGGACCGGACCGAGGGTTACGGGAGCAGGATCGACAGCACGCAAGGGGGGAAT-TGG
1 TCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGG-ATCGGG
**
24210135 TCGATCCCTAGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGG
65 TCGATCCC-AGCTTGCGCATTCTACCTCTCCGGTCGGCTGAACGCCCGCACGCTCGTTTCGTGGG
24210200 TTAGCTTAGCCATACGGAGTTCATTCCATA
129 TT-GCTTAG-CATACGGAGTTCATTCCATA
24210230 TCTAAG
1 TCTAAG
24210236 CATATGGAGC
Statistics
Matches: 253, Mismatches: 58, Indels: 25
0.75 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 41 0.16
159 196 0.77
160 14 0.06
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
TCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAAGGGGGGATCGGGT
CGATCCCAGCTTGCGCATTCTACCTCTCCGGTCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTT
GCTTAGCATACGGAGTTCATTCCATA
Found at i:24211455 original size:26 final size:26
Alignment explanation
Indices: 24211407--24211457 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
24211397 TGGCTTAGGC
* *
24211407 ATACGGAGTTCATTCCATGTCTAAGT
1 ATACGGAGCTCATTCCATATCTAAGT
24211433 ATACGGAGCTCATTCCCA-ATCTAAG
1 ATACGGAGCTCATT-CCATATCTAAG
24211458 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGCTCATTCCATATCTAAGT
Found at i:24211917 original size:27 final size:26
Alignment explanation
Indices: 24211887--24211961 Score: 80
Period size: 26 Copynumber: 2.8 Consensus size: 26
24211877 AAAAATTTAA
24211887 AAAAATTCAAAACCGTAAAAAGTTTT
1 AAAAATTCAAAACCGTAAAAAGTTTT
* ** *
24211913 GAAAATAT-GGAACCGTAAAAAATTTT
1 AAAAAT-TCAAAACCGTAAAAAGTTTT
*
24211939 AAAAAATCTAAAACCGTAAAAAG
1 AAAAATTC-AAAACCGTAAAAAG
24211962 CCGGGTCGAT
Statistics
Matches: 37, Mismatches: 9, Indels: 5
0.73 0.18 0.10
Matches are distributed among these distances:
25 1 0.03
26 24 0.65
27 12 0.32
ACGTcount: A:0.56, C:0.11, G:0.11, T:0.23
Consensus pattern (26 bp):
AAAAATTCAAAACCGTAAAAAGTTTT
Found at i:24212758 original size:159 final size:159
Alignment explanation
Indices: 24212299--24212758 Score: 433
Period size: 158 Copynumber: 2.9 Consensus size: 159
24212289 GCAAGATCGG
* ** * * * *
24212299 CAGCACACAGAAGGGGACCGGGTTGATCCCTGGCTTGTGCATTATGCCTCGTCGACCGGCTGAGT
1 CAGCACACAGAAGGGGATCGGGCCGATCCCTGGCTTGAGCATTATGCCTCTTCGACCGGCTAAGA
* * ** * * *
24212364 GCCTGTAAACTCATTTCGTGGCTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
66 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * *
24212429 TAGATTGAGGGTTGCGACAACAAGATTGA
131 CAGACCGAGGGTTACGACAACAAGACTGA
* * * * *
24212458 CAGCACACAG-GGGGGATCGGGCCGATCCCTGGCTT-ACGTATTCTGCCTCTCCGACTGGCTAAG
1 CAGCACACAGAAGGGGATCGGGCCGATCCCTGGCTTGA-GCATTATGCCTCTTCGACCGGCTAAG
* * * * * **
24212521 AGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGCTCATT-CCATGTCTAAGCCCCA
65 AGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCA
* * ** *
24212585 -ACCAGACCGAGGGTTATGGCAACGGGACTGG
128 GACCAGACCGAGGGTTACGACAACAAGACTGA
* ** * * *
24212616 CTGCATGCAGAAGGGGATCGGGCCGATCCCCGGCTTGAGCATTATGCCTCTTCGACCGGCTCAGC
1 CAGCACACAGAAGGGGATCGGGCCGATCCCTGGCTTGAGCATTATGCCTCTTCGACCGGCTAAGA
** * * *
24212681 GCCCGCACGCTTGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTTAGATCAGAC
66 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
*
24212746 CGGACCGAGGGTT
131 CAGACCGAGGGTT
24212759 GTGGTAGTAA
Statistics
Matches: 234, Mismatches: 60, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 114 0.49
159 113 0.48
160 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
CAGCACACAGAAGGGGATCGGGCCGATCCCTGGCTTGAGCATTATGCCTCTTCGACCGGCTAAGA
GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTACGACAACAAGACTGA
Found at i:24212773 original size:159 final size:159
Alignment explanation
Indices: 24212299--24212776 Score: 442
Period size: 159 Copynumber: 3.0 Consensus size: 159
24212289 GCAAGATCGG
* ** * * * *
24212299 CAGCACACAGAAGGGGACCGGGTTGATCCCTGGCTTGTGCATTATGCCTCGTCGACCGGCTGAGT
1 CAGCACACAGAAGGGGATCGGGCCGATCCCTGGCTTGAGCATTATGCCTCTTCGACCGGCTAAGA
* * ** * * *
24212364 GCCTGTAAACTCATTTCGTGGCTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
66 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * * *
24212429 TAGATTGAGGGTTGCGACAACAAGATTGA
131 CAGACCGAGGGTTGTGGCAACAAGACTGA
* * * * *
24212458 CAGCACACAG-GGGGGATCGGGCCGATCCCTGGCTT-ACGTATTCTGCCTCTCCGACTGGCTAAG
1 CAGCACACAGAAGGGGATCGGGCCGATCCCTGGCTTGA-GCATTATGCCTCTTCGACCGGCTAAG
* * * * * **
24212521 AGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGCTCATT-CCATGTCTAAGCCCCA
65 AGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCA
* ** *
24212585 -ACCAGACCGAGGGTTATGGCAACGGGACTGG
128 GACCAGACCGAGGGTTGTGGCAACAAGACTGA
* ** * * *
24212616 CTGCATGCAGAAGGGGATCGGGCCGATCCCCGGCTTGAGCATTATGCCTCTTCGACCGGCTCAGC
1 CAGCACACAGAAGGGGATCGGGCCGATCCCTGGCTTGAGCATTATGCCTCTTCGACCGGCTAAGA
** * * *
24212681 GCCCGCACGCTTGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTTAGATCAGAC
66 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * **
24212746 CGGACCGAGGGTTGTGGTAGTAAGACTGA
131 CAGACCGAGGGTTGTGGCAACAAGACTGA
24212775 CA
1 CA
24212777 ACAGGATTGG
Statistics
Matches: 244, Mismatches: 68, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
157 3 0.01
158 114 0.47
159 123 0.50
160 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (159 bp):
CAGCACACAGAAGGGGATCGGGCCGATCCCTGGCTTGAGCATTATGCCTCTTCGACCGGCTAAGA
GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTGTGGCAACAAGACTGA
Found at i:24213410 original size:26 final size:26
Alignment explanation
Indices: 24213381--24213432 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24213371 GTTGGCTTAG
*
24213381 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGCTCATTCCCA-GTCTAA
24213407 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
24213433 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:24213432 original size:498 final size:508
Alignment explanation
Indices: 24212459--24213432 Score: 1161
Period size: 498 Copynumber: 1.9 Consensus size: 508
24212449 CAAGATTGAC
* ** * *
24212459 AGCACACAGGGGGGATCGGGCCGATCCCTGGCTTACGTATTCTGCCTCTCCGACTGGCTAAGAGC
1 AGCACACAGGGGGGATCGAGCCGATCCCCAGCTTACGCATTCTACCTCTCCGACTGGCTAAGAGC
** *
24212524 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACCA
66 CCGCACGCCCATTTCATGGGTTGGAGTAGGCATAGGGAGCTCATTCCAAGTCTAAGCCCCAACCA
* ** * * * *
24212589 GACCGAGGGTTATGGCAACGGGACTGGCTGCATGCAGAAGGGGATCGGGCCGATCCCCGGCTTGA
131 GACCAAGGGTTATGGCAACAAGACTGACGGCACGCAGAAGGGGATCAGGCCGATCCCCGGCTTGA
* *
24212654 GCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTATGCATACG
196 GCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATCCATACG
* * * *
24212719 AAGTTCATTCCCAGTCTTAGATCAGACCGGACCGAGGGTTGTGGTAGTAAGACTGACAACAGGAT
261 AAGTTCATTCCCAGCCTAACATCAGACCGGACCGA--G--GTGGTA-T-AGACTGACAACAGGAC
* * * *
24212784 TGGCAGCACGTAGAGGGGGACCGGGTTGATCCTCGGCTTGCGCATCCTGCCTCTCCGACCGACTG
320 TGACAGCACATAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATCCTACCTCTCCGACCGACTG
* *
24212849 AGCGCCCACACGCTTATTCCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGGATA
385 AGCGCCCACACGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATA
* *
24212914 CGAAGTTTATTCCAAGTCTAAGATCGGACCGGACCGAAGGTTGCGGTAGCAGGATCAGT
450 CGAAGCTCATTCCAAGTCTAAGATCGGACCGGACCGAAGGTTGCGGTAGCAGGATCAGT
* * * *
24212973 AGCACGCAGGTGGGATCGAGCCGATCCCCAGCTTACGCATTCTACCTCTTCGA-TCGGCTGAGCA
1 AGCACACAGGGGGGATCGAGCCGATCCCCAGCTTACGCATTCTACCTCTCCGACT-GGCTAAG-A
* * **
24213037 -CCCGCATGCCCATTTCGTGGGTTGGAGTA-GCATAGGGAGCTCATTCCAAGTCTAAGCCCCAGT
64 GCCCGCACGCCCATTTCATGGGTTGGAGTAGGCATAGGGAGCTCATTCCAAGTCTAAGCCCCAAC
* * **
24213100 CGGACCAAGGGTTGTGGCAGTAAGA-TCGACGGCACGCA-AAGGGGGATCAGGCCGATCCCC-GC
129 CAGACCAAGGGTTATGGCAACAAGACT-GACGGCACGCAGAA-GGGGATCAGGCCGATCCCCGGC
* * * *
24213162 TTGCGCATTATGCCTCTTCGGCTGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATCCA
192 TTGAGCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATCCA
* * * * *
24213227 TACGGAGTTCATT-CCAGCCTAACATCGGACTGGATCGA-G-GGT-T-G-C-GACAGCAGGACTG
257 TACGAAGTTCATTCCCAGCCTAACATCAGACCGGACCGAGGTGGTATAGACTGACAACAGGACTG
* * * ** *
24213285 ACAGCACATAG-GGGGGACCGGGTCGATCTTCGGCTTGTGCATTCTACCTCTCCGGTCGGCTGAG
322 ACAGCACATAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATCCTACCTCTCCGACCGACTGAG
* * * * * *
24213349 CGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATAC
387 CGCCCACACGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATAC
*
24213413 -AGAGCTCATTCCCAGTCTAA
451 GA-AGCTCATTCCAAGTCTAA
24213433 TATTTTGAGC
Statistics
Matches: 391, Mismatches: 63, Indels: 28
0.81 0.13 0.06
Matches are distributed among these distances:
497 4 0.01
498 112 0.29
499 20 0.05
500 1 0.00
501 1 0.00
503 1 0.00
505 3 0.01
506 1 0.00
511 19 0.05
512 76 0.19
513 76 0.19
514 76 0.19
515 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (508 bp):
AGCACACAGGGGGGATCGAGCCGATCCCCAGCTTACGCATTCTACCTCTCCGACTGGCTAAGAGC
CCGCACGCCCATTTCATGGGTTGGAGTAGGCATAGGGAGCTCATTCCAAGTCTAAGCCCCAACCA
GACCAAGGGTTATGGCAACAAGACTGACGGCACGCAGAAGGGGATCAGGCCGATCCCCGGCTTGA
GCATTATGCCTCTTCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATCCATACG
AAGTTCATTCCCAGCCTAACATCAGACCGGACCGAGGTGGTATAGACTGACAACAGGACTGACAG
CACATAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATCCTACCTCTCCGACCGACTGAGCGCC
CACACGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGC
TCATTCCAAGTCTAAGATCGGACCGGACCGAAGGTTGCGGTAGCAGGATCAGT
Found at i:24220434 original size:171 final size:171
Alignment explanation
Indices: 24220121--24220440 Score: 401
Period size: 171 Copynumber: 1.9 Consensus size: 171
24220111 AGCACGTAGG
* *
24220121 GGGGACAGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGCACCCGCACGCTC
1 GGGGACAGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTC
* * * * * *
24220186 GTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGCCTAAGCCCCAGCTGAATCGAGGGT
66 GTTTCGTGGGTTGACTTAGGCATACAGAGTACATTCCATGCCTAAGCACCAGATGAACCGAGAGT
* **
24220251 TGTGGTAGTAGGACCGACAACGGGATCGACAGCATGCAGAA
131 TGCGACAGTAGGACCGACAACGGGATCGACAGCATGCAGAA
* * * * * *
24220292 GGGGACTGGGCTGATCCCTGGCTTGCACATTATGCCTCTTCGGCCGGCTGAGCACCCGTACGCTC
1 GGGGACAGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTC
* * * *
24220357 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGA
66 GTTTCGTGGGTTGACTTAGGCATACAGAGTACATT-CCATGCCTAAGCACCAGAT-GAACCGAGA
* *
24220420 TTTGCGACAGTAGGATCGACA
129 GTTGCGACAGTAGGACCGACA
24220441 GCACGCAGGG
Statistics
Matches: 124, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
170 4 0.03
171 117 0.94
172 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (171 bp):
GGGGACAGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACAGAGTACATTCCATGCCTAAGCACCAGATGAACCGAGAGT
TGCGACAGTAGGACCGACAACGGGATCGACAGCATGCAGAA
Found at i:24220736 original size:158 final size:158
Alignment explanation
Indices: 24220273--24221034 Score: 696
Period size: 158 Copynumber: 4.8 Consensus size: 158
24220263 ACCGACAACG
* * * * * *
24220273 GGATCGACAGCATGCAGAAGGGGACTGGGCTGATCCCTGGCTTGCACATTATGCCTCTTCGGCCG
1 GGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCG
* * * * *
24220338 GCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
66 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAG
* * * *
24220403 AT-CAGATCGGACCGA-GATT-TGCGACAGTA
130 ATCCA-ACCAGACCGAGGGTTATG-G-CAGCA
* * * * *
24220432 GGATCGACAGCACGCAG-GGGGGATCGGGCCGAACCCTGGCTTGAGCATTTTGCCTCTCCGGTCG
1 GGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCG
* * * ** *
24220496 GCTGAGCGCCCGCACG-TC-TGTTCGTGGGTTGGGTTAGGCATAGGGAGCACATTCCATGACTAA
66 GCTGAGCGCCCGCACGCTCGT-TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAA
** * *
24220559 GCCCCAGCCAGACCGAGGGTTATGGCAGCG
129 GATCCAACCAGACCGAGGGTTATGGCAGCA
* ** * * *
24220589 GGACCGGTAGCACGCAGAGGGGGACCGGGCCAATCCCTGGCTTGCGCATTATGCCTCTTCGACCG
1 GGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCG
* * * * * * *
24220654 GCTCAGTGCCCGCACGCTCGTTTCATTGGTTGACTTATGCATATGGAGTTCATTCCAGTGTAAGA
66 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGA
** * * *
24220719 TTGAACCAGACCTAGGGTTACGGTAGCA
131 TCCAACCAGACCGAGGGTTATGGCAGCA
* * * * * **
24220747 AGATCGACAGCACGCA-AGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCATCTCCGATC
1 GGATCGACAGCACGCAGA-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCC
** * *
24220811 AACTGAGCGCCTGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAA
** * * *
24220876 GATCGGACCGGACTGAGGGTTATGACAGCA
129 GATCCAACCAGACCGAGGGTTATGGCAGCA
* * * * * *
24220906 GGATAGACAGCACGTAG-GGGGGACCGAGTCGATCTCC-AGCTTGCGCATTCTGCCTCTCCGGCC
1 GGATCGACAGCACGCAGAGGGGGACCGGGCCGATC-CCTGGCTTGCGCATTATGCCTCTCCGGCC
* * * * *
24220969 AGCTGAGCGCCCGCATGCTCGTTTCGTGGCTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
65 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAA
24221034 G
129 G
24221035 CATACGGAGC
Statistics
Matches: 486, Mismatches: 105, Indels: 25
0.79 0.17 0.04
Matches are distributed among these distances:
156 4 0.01
157 60 0.12
158 331 0.68
159 90 0.19
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCG
GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGA
TCCAACCAGACCGAGGGTTATGGCAGCA
Found at i:24220819 original size:316 final size:315
Alignment explanation
Indices: 24220047--24221034 Score: 957
Period size: 316 Copynumber: 3.1 Consensus size: 315
24220037 TGTGACATAA
* * * * * *
24220047 GCATACGGAGTTCATTCCTATTCTAAGATCAGA-CTGAATCAAGGGTTGCGGTAGTAGGATCGGC
1 GCATATGGAGTTCATTCC-AGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGTAGTAGGATCGAC
* * * *
24220111 AGCACGTAGGGGGGACAGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGCAC
64 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGCGC
* *
24220176 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGCCTAAGCCCCAG-CT
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGACTAAGCCCCAGCCA
* * * * * * * *
24220240 GAATCGAGGGTTGTGGTAGTAGGACCGACAACGGGATCGACAGCATGCAGAAGGGGACTGGGCTG
194 G-ACCGAGGGTTATGGCAG-CGG---GAC--C-GG-T----AGCACGCAGAGGGGGACCGGGCCG
* * * *
24220305 ATCCCTGGCTTGCACATTATGCCTCTTCGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTG
246 ATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTC-TTGGTTG
24220370 ACTTAG
310 ACTTAG
** * * ** **
24220376 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGATTTGCGACAGTAGGATCGACA
1 GCATATGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGACA
* * * * *
24220441 GCACGCAGGGGGGATCGGGCCGAACCCTGGCTTGAGCATTTTGCCTCTCCGGTCGGCTGAGCGCC
65 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGCGCC
* * *
24220506 CGCACG-TC-TGTTCGTGGGTTGGGTTAGGCATAGGGAGCACATTCCATGACTAAGCCCCAGCCA
130 CGCACGCTCGT-TTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGACTAAGCCCCAGCCA
*
24220569 GACCGAGGGTTATGGCAGCGGGACCGGTAGCACGCAGAGGGGGACCGGGCCAATCCCTGGCTTGC
194 GACCGAGGGTTATGGCAGCGGGACCGGTAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGC
* * * *
24220634 GCATTATGCCTCTTCGACCGGCTCAGTGCCCGCACGCTCGTTTCATTGGTTGACTTAT
259 GCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTC-TTGGTTGACTTAG
* * * * * *
24220692 GCATATGGAGTTCATTCCAGTGTAAGAT-TGAACCAGACCTAGGGTTACGGTAGCAAGATCGACA
1 GCATATGGAGTTCATTCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGTAGTAGGATCGACA
* * * **
24220756 GCACGCAAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCATCTCCGATCAACTGAGCGC
65 GCACGC-AGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGCGC
* * * * * ** *
24220821 CTGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ATCGGACC
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGACTAAGCCCCAG-CC
* * * * ** ** * * * *
24220885 GGACTGAGGGTTATGACAGCAGGATAGACAGCACGTAG-GGGGGACCGAGTCGATCTCC-AGCTT
193 AGACCGAGGGTTATGGCAGCGGGACCGGTAGCACGCAGAGGGGGACCGGGCCGATC-CCTGGCTT
* * * * * *
24220948 GCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCATGCTCGTTTCGTGGCTTGGCTTAG
257 GCGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCTTGG-TTGACTTAG
24221008 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCA-GTCTAAG
24221035 CATACGGAGC
Statistics
Matches: 546, Mismatches: 101, Indels: 36
0.80 0.15 0.05
Matches are distributed among these distances:
314 1 0.00
315 43 0.08
316 233 0.43
317 79 0.14
318 1 0.00
320 1 0.00
321 2 0.00
322 1 0.00
324 3 0.01
327 3 0.01
328 62 0.11
329 113 0.21
330 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (315 bp):
GCATATGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGACTAAGCCCCAGCCAGA
CCGAGGGTTATGGCAGCGGGACCGGTAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGC
ATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCTTGGTTGACTTAG
Found at i:24221037 original size:26 final size:26
Alignment explanation
Indices: 24221008--24221059 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24220998 CTTGGCTTAG
* *
24221008 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
24221034 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
24221060 TATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:24221983 original size:183 final size:183
Alignment explanation
Indices: 24221656--24222100 Score: 482
Period size: 183 Copynumber: 2.4 Consensus size: 183
24221646 TACCACCCTT
* ** * ** *
24221656 CGATCCTCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTAGGT
1 CGATCCCCGGCTTGCGCATTTTGCCTCTCCGGTCGGCTGAG-TGCCGCACGCTCGTTTCGTGGGT
** * * *
24221721 TGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCA
65 TGACTTAGGCATACAGAGTTCATCCCCAGTCTAAACATACAGAGTTCATTCCCAATCTAAGATCA
* * * * * *
24221786 TACCGAATCGAGGGTTACGACAGTAGGATCGGCAACATGTAGAGGGGA-CCGGAC
130 GACCGAACCGAGGGTTACGACAGCAGGATCGGCAACACGCAGAGGGGATCAGG-C
* *
24221840 CGATCCCCGGCTTGCGCATTTTGCCTCCCCGGTCGGCTGAGTGTCGCACGCTCGTTTCGTGGGTT
1 CGATCCCCGGCTTGCGCATTTTGCCTCTCCGGTCGGCTGAGTGCCGCACGCTCGTTTCGTGGGTT
** *
24221905 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAACATATGGAGTT-ATTTCCCAATCTAAGATCG
66 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAACATACAGAGTTCA-TTCCCAATCTAAGATCA
** * * * * *
24221969 GATTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGATCAGGC
130 GACCGAACCGAGGGTTACGACAGCAGGATCGGCAACACGCAGAGGGGATCAGGC
* * * * * * * *
24222023 CGATCCCCGACTTGCTCATTTTGCCTCTCCAGTCAGCTGGGTGCCCGCACTCCCGTTTTGTGGGT
1 CGATCCCCGGCTTGCGCATTTTGCCTCTCCGGTCGGCTGAGTG-CCGCACGCTCGTTTCGTGGGT
24222088 TCG-CTTAGGCATA
65 T-GACTTAGGCATA
24222101 GGGAGCTCAT
Statistics
Matches: 217, Mismatches: 40, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
182 1 0.00
183 148 0.68
184 67 0.31
185 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (183 bp):
CGATCCCCGGCTTGCGCATTTTGCCTCTCCGGTCGGCTGAGTGCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACAGAGTTCATCCCCAGTCTAAACATACAGAGTTCATTCCCAATCTAAGATCAG
ACCGAACCGAGGGTTACGACAGCAGGATCGGCAACACGCAGAGGGGATCAGGC
Found at i:24222246 original size:158 final size:157
Alignment explanation
Indices: 24221973--24222430 Score: 346
Period size: 159 Copynumber: 2.9 Consensus size: 157
24221963 AGATCGGATT
* * * *
24221973 GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGATCAGGCCGATCCCCGACTTGC
1 GGACCGAGGGTTGCGGCAACAGGATCGGCAGCACGCAGGGGGGACCAGACCGATCCCCGACTTAC
* ** * * ** *
24222038 TCATTTTGCCTCTCCAGTCAGCTGGGTGCCCGCACTCCCGTTTTGTGGGTTCG-CTTAGGCATAG
66 TCATTATGCCTCTCCAGTCAGCTCAGCGCCCACACTCCCGTTCCGTGGGTT-GACTTAGGCATAC
24222102 GGAGCTCATTCCTTATCTAATCCCAGTC
130 GGAGCTCATTCCTTATCTAATCCCAGTC
* * * *
24222130 GGACCGAGGGTTGTGGCAACGGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTA
1 GGACCGAGGGTTGCGGCAACAGGATCGGCAGCACGCAG-GGGGGACCAGACCGATCCCCGACTTA
* * * * *
24222195 CTTATTATGCCTCTTC-GATCGGCTCAGCGCCCACA-TGCTCGTTCCGTGGGTTGACTTATGCAT
65 CTCATTATGCCTCTCCAG-TCAGCTCAGCGCCCACACT-CCCGTTCCGTGGGTTGACTTAGGCAT
* ** ** **
24222258 ACGGAGTTCATTCCCAATCTAAGACTGGATC
128 ACGGAGCTCATTCCTTATCTAATCCCAG-TC
* * ** * * * * ** ** *
24222289 GGACAGAGGGTTACGATAGCAGGATCGACAGCACGCAGGGGGGGATCGGGTCGATCCCCGGTTTG
1 GGACCGAGGGTTGCGGCAACAGGATCGGCAGCACGCA-GGGGGGACCAGACCGATCCCCGACTTA
* * * ** * * * * * * * *
24222354 CGCATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATGC
65 CTCATTATGCCTCTCCAGTCAGCTCAGCGCCCACACTCCCGTTCCGTGGGTTGACTTAGGCATAC
*
24222419 GGAGTTCATTCC
130 GGAGCTCATTCC
24222431 ATGTCTGAGC
Statistics
Matches: 238, Mismatches: 55, Indels: 14
0.78 0.18 0.05
Matches are distributed among these distances:
157 38 0.16
158 86 0.36
159 112 0.47
160 2 0.01
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (157 bp):
GGACCGAGGGTTGCGGCAACAGGATCGGCAGCACGCAGGGGGGACCAGACCGATCCCCGACTTAC
TCATTATGCCTCTCCAGTCAGCTCAGCGCCCACACTCCCGTTCCGTGGGTTGACTTAGGCATACG
GAGCTCATTCCTTATCTAATCCCAGTC
Found at i:24223568 original size:158 final size:157
Alignment explanation
Indices: 24223296--24223664 Score: 395
Period size: 158 Copynumber: 2.3 Consensus size: 157
24223286 TGAGCACCCA
** *
24223296 CACGCTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGATCAGAC
* * * * * * * ** *
24223361 CAAGAGTTGCGGTATCAGGATCGATGACACGTAGGGGGGATCGGGTCGATCCCCGGCTTGTGCAT
65 CAAGAGTTACGGCAGCAAGATCGATGACACGCAGGGGGGACCAGGTCGATCCCCAACTTGCGCAT
* * * *
24223426 TCTACGTCTTTAG-TCGGCTCAGTGCCCG
130 TCTACCTC-TCAGACCGGCTCAGCGCCCG
* *
24223454 CACGCTCGTTTCGTGGGTTAACTTATGCATACGGAGTTCATTGCCAGTCTAAGATCGGATC-GAA
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGGATCAG-A
* *
24223518 CCGAAG-GTTACGGCAGCAAGATCGAT-AGCATGCAGTGGGGACCAGGTCGATCCCCAACTTGCG
64 CC-AAGAGTTACGGCAGCAAGATCGATGA-CACGCAGGGGGGACCAGGTCGATCCCCAACTTGCG
* * * *
24223581 CATTCTACCTCTCCGACCGGTTGAGCGCTCG
127 CATTCTACCTCTCAGACCGGCTCAGCGCCCG
* * *
24223612 CACGCTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAG
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG
24223665 CCCAACTGGA
Statistics
Matches: 175, Mismatches: 31, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
157 7 0.04
158 165 0.94
159 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (157 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATCGGATCAGACC
AAGAGTTACGGCAGCAAGATCGATGACACGCAGGGGGGACCAGGTCGATCCCCAACTTGCGCATT
CTACCTCTCAGACCGGCTCAGCGCCCG
Found at i:24224117 original size:26 final size:26
Alignment explanation
Indices: 24224087--24224139 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24224077 GTTAACTTAG
24224087 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24224113 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24224139 G
1 G
24224140 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24224505 original size:26 final size:26
Alignment explanation
Indices: 24224455--24224507 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24224445 GTTGACTTAG
*
24224455 GCATACGGAGTTCATCCCCGATCTAA
1 GCATACGGAGTTCATCCCAGATCTAA
*
24224481 GCATATGGAGTTCATTCCCAG-TCTAA
1 GCATACGGAGTTCA-TCCCAGATCTAA
24224507 G
1 G
24224508 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAGATCTAA
Found at i:24224785 original size:159 final size:159
Alignment explanation
Indices: 24224481--24224982 Score: 414
Period size: 159 Copynumber: 3.2 Consensus size: 159
24224471 CCCGATCTAA
* * * * * * *
24224481 GCATATGGAGTTCATTCCCA-GTCTAAGA-TCAGACCGGACCGAGAGTTACGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGACCCA-ACCAGACCGAGGGTTACGGCAACAGGACCGA
* * * * ** * * *
24224544 CAGCAC--ACAGGGGGGACCGGGTCGAT-CCTGGTTTGCGCATTCTGCCTCTCCGG-CTGACT-A
64 CAGCACGTA-AGGGTGGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGGTC-G-CTCG
* *
24224604 AGCGCCCGCACACCCATTTCGTGGGTTGGCTTAG
126 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * ** *
24224638 GCATAGGGAGCTCATTCCATGTCTCAGACCCAACCGGATCGAGGGTTGTGGCAGCAGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGACCGAGGGTTACGGCAACAGGACCGACA
* ** *
24224703 GCACGTAGAGGG-GGATC-GAGCCGATCCCCGACTTGTGCATTATGCCTCTTCGGTCGACTCGA-
66 GCACGTA-AGGGTGGACCAG-GCCGATCCCCGACTTACGCATTATGCCTCTCCGGTCG-CTCGAG
** * *
24224765 CGCCCGCACGCTTGTTTCGTGGGTTGACTTAT
128 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * *** * *
24224797 GCATACAGAGTTCATTCC-TAGTCTAATATTGAATCAGACCGAGGGTTACGGCAACAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGACCCAACCAGACCGAGGGTTACGGCAACAGGACCGAC
* * * * * * *
24224861 AGCACGTAAGGGTGGACCAGGTCGATTCTCGGCTTACGCATTCTGCCTCTCCGGTCGGTTGAGCG
65 AGCACGTAAGGGTGGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGGTCGCTCGAGCG
24224926 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
24224956 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
24224983 CTTACGGAGC
Statistics
Matches: 274, Mismatches: 58, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
156 3 0.01
157 53 0.19
158 19 0.07
159 195 0.71
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCCAACCAGACCGAGGGTTACGGCAACAGGACCGACA
GCACGTAAGGGTGGACCAGGCCGATCCCCGACTTACGCATTATGCCTCTCCGGTCGCTCGAGCGC
CCGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:24224996 original size:26 final size:26
Alignment explanation
Indices: 24224959--24225008 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
24224949 GGCTTAGGCA
*
24224959 TACGGAGTTCATT-CCATGTCTAAGCT
1 TACGGAGCTCATTCCCA-GTCTAAGCT
24224985 TACGGAGCTCATTCCCAGTCTAAG
1 TACGGAGCTCATTCCCAGTCTAAG
24225009 ATTTTGAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGCTCATTCCCAGTCTAAGCT
Found at i:24225712 original size:26 final size:26
Alignment explanation
Indices: 24225676--24225728 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24225666 GATGACTTAG
24225676 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24225702 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24225728 G
1 G
24225729 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24226362 original size:159 final size:157
Alignment explanation
Indices: 24226086--24226551 Score: 409
Period size: 159 Copynumber: 3.0 Consensus size: 157
24226076 ATGAAGTTCG
* * ** ** ** *
24226086 TTCCAAGTCTAAGATCAGA-TAGGATTGAGGGTTACGATAGCAGGATCGGCAACACGCAGGGGGA
1 TTCCCAGTCTAAGACCAGACT-GGACCGAGGGTTACGGCAGCAGGATCAACAACACGCAAGGGGA
* * * * * * * * * *
24226150 CCGAGCCGATCCCCGGCTTACTCATTCTGCCACTCCGATCGGCTGAGCTCCCGCACGCCCGTTTC
65 GCGGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGATCGGCTGAGCACCCGCACGCACGTTTC
* *
24226215 GTGGGTTGGCTTAGGCATAGGGAGATCA
130 ATGGGTTGGCTTAGGCATACGGAGATCA
* * ** ** *
24226243 TT-TCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGTGGGATCAACAACATGCAGAGGG
1 TTCCCA-GTCTAAG-ACCAGACTGGACCGAGGGTTACGGCAGCAGGATCAACAACACGCA-AGGG
* * * * * * * * *
24226306 G-GACTGGGCCGATTCCTGGCTTGCGCATTATGCTTCTTCGATCGGCTCAACGCCCGCATGCAAG
63 GAG-C-GGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGATCGGCTGAGCACCCGCACGCACG
* * *
24226370 TTTCATGGGTTGACTTATGCATACGGAGTTCA
126 TTTCATGGGTTGGCTTAGGCATACGGAGATCA
* * * *
24226402 TTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGTAGCAGGATCAACAGCACGTAAGGGGAG
1 TTCCCAGTCTAAGACCAGACTGGACCGAGGGTTACGGCAGCAGGATCAACAACACGCAAGGGGAG
* * * **
24226467 CGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGTTCGTTTCA
66 CGGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGATCGGCTGAGCACCCGCACGCACGTTTCA
24226532 TGGGTTGGCTTAGGCATACG
131 TGGGTTGGCTTAGGCATACG
24226552 AATTTCAATC
Statistics
Matches: 236, Mismatches: 64, Indels: 18
0.74 0.20 0.06
Matches are distributed among these distances:
156 1 0.00
157 103 0.44
158 18 0.08
159 112 0.47
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
TTCCCAGTCTAAGACCAGACTGGACCGAGGGTTACGGCAGCAGGATCAACAACACGCAAGGGGAG
CGGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGATCGGCTGAGCACCCGCACGCACGTTTCA
TGGGTTGGCTTAGGCATACGGAGATCA
Found at i:24226549 original size:157 final size:157
Alignment explanation
Indices: 24226080--24226571 Score: 452
Period size: 157 Copynumber: 3.1 Consensus size: 157
24226070 AAGCATATGA
* * ** * **
24226080 AGTTCGTTCCAAGTCTAAGATCAGA-TAGGATTGAGGGTTACGATAGCAGGATCGGCAACACGCA
1 AGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTACGGTAGCAGGATCAACAACACGCA
* * * * * * * * *
24226144 GGGGGACCGAGCCGATCCCCGGCTTACTCATTCTGCCACTCCGATCGGCTGAGCTCCCGCACGCC
65 AGGGGAGCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCA
* *
24226209 CGTTTCGTGGGTTGGCTTAGGCATAGGG
130 CGTTTCATGGGTTGGCTTAGGCATACGG
* * ** ** * ** *
24226237 AGATCATT-TCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGTGGGATCAACAACATGC
1 AGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTACGGTAGCAGGATCAACAACACGC
* * * * * * *
24226300 AGAGGGG-GACTGGGCCGATTCCTGGCTTGCGCATTATGCTTCTTCGATCGGCTCAACGCCCGCA
64 A-AGGGGAG-C-GGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCA
* * * *
24226364 TGCAAGTTTCATGGGTTGACTTATGCATACGG
126 CGCACGTTTCATGGGTTGGCTTAGGCATACGG
* *
24226396 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGTAGCAGGATCAACAGCACGTAA
1 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGTAGCAGGATCAACAACACGCAA
* * * **
24226461 GGGGAGCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGTTC
66 GGGGAGCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCAC
*
24226526 GTTTCATGGGTTGGCTTAGGCATACGA
131 GTTTCATGGGTTGGCTTAGGCATACGG
* * *
24226553 ATTTCAATCCTAGTCTAAG
1 AGTTCATTCCCAGTCTAAG
24226572 CATACGGAGC
Statistics
Matches: 256, Mismatches: 70, Indels: 18
0.74 0.20 0.05
Matches are distributed among these distances:
156 1 0.00
157 123 0.48
158 18 0.07
159 112 0.44
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGTAGCAGGATCAACAACACGCAA
GGGGAGCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCACGCAC
GTTTCATGGGTTGGCTTAGGCATACGG
Found at i:24227302 original size:26 final size:26
Alignment explanation
Indices: 24227266--24227318 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24227256 GTTGACTTAG
*
24227266 GCATACGGAGTTCATCCCCAATCTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
* *
24227292 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
24227318 G
1 G
24227319 AGAGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAATCTAA
Found at i:24227670 original size:26 final size:26
Alignment explanation
Indices: 24227634--24227686 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24227624 GTTGACTTAG
24227634 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
24227660 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24227686 G
1 G
24227687 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24228160 original size:159 final size:158
Alignment explanation
Indices: 24227660--24228162 Score: 482
Period size: 159 Copynumber: 3.2 Consensus size: 158
24227650 CCTAGTCTAA
*
24227660 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGTAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGTAGGATCGGC
* ** * * *
24227724 AGCACGCA-GGGGGGATCGGGTCGATCCTTGGCTTACGCATTCTGCCTCTTTGGTCTGCTGA-CT
65 AGCACGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTC-TCGGTCCGCTGAGC-
* * *
24227787 GGCCGCATTGC-CATTCCATGGGTTGGCTTAG
128 GCCCGCA-TGCTCATTTCGTGGGTTGGCTTAG
* * * * ** * * *
24227818 GCATAGGGAGCTCATTCCATGTGTAAG-CCCCAGCCAGACCGAA-GGTTGTGGCAGTGGGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCAGACC-AAGGGTTGCGGCAGTAGGATCGG
* * * * * * *
24227881 CAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGC
64 CAGCACGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTC-TCGGTCCGCTGAGC
** * ** *
24227946 GCCCGCACACTCCTTTCGTGGGTTAACTTAT
128 GCCCGCATGCTCATTTCGTGGGTTGGCTTAG
* * * * * **
24227977 GCATACGAAGTTCATTTC-TAGTCTAAGATCGGACCGGACCAAGGGTTACAGCAGTAGGATCAAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGTAGGATCGGC
24228041 AGCACGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCAGG-CCGCTTGAGC
65 AGCACGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTC-GGTCCGC-TGAGC
* *
24228105 GCCCACATGCTCGTTTCGTGGGTTGGCTTAG
128 GCCCGCATGCTCATTTCGTGGGTTGGCTTAG
*
24228136 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
24228163 CATACAAAGC
Statistics
Matches: 269, Mismatches: 64, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
157 5 0.02
158 62 0.23
159 198 0.74
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGTAGGATCGGCA
GCACGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCGGTCCGCTGAGCGCC
CGCATGCTCATTTCGTGGGTTGGCTTAG
Found at i:24228176 original size:26 final size:26
Alignment explanation
Indices: 24228136--24228187 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24228126 GTTGGCTTAG
* *
24228136 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAAAGCTCATTCCCA-GTCTAA
24228162 GCATACAAAGCTCATTCCCAGTCTAA
1 GCATACAAAGCTCATTCCCAGTCTAA
24228188 TATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (26 bp):
GCATACAAAGCTCATTCCCAGTCTAA
Found at i:24228883 original size:26 final size:27
Alignment explanation
Indices: 24228847--24228900 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
24228837 GTTGACTTAG
24228847 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCCAGTCTAA
*
24228873 GCATACGGAGTTCATTCCCTAGTCTAA
1 GCATACGGAGTTCATTCCCCAGTCTAA
24228900 G
1 G
24228901 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCCAGTCTAA
Found at i:24229231 original size:26 final size:26
Alignment explanation
Indices: 24229191--24229243 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24229181 GTTAACTTAG
* *
24229191 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGCTCATCCCCAGTATAA
*
24229217 GCATACGGAGCTCATTCCCAGTATAA
1 GCATACGGAGCTCATCCCCAGTATAA
24229243 G
1 G
24229244 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTATAA
Found at i:24229526 original size:343 final size:342
Alignment explanation
Indices: 24228775--24230078 Score: 1061
Period size: 343 Copynumber: 3.8 Consensus size: 342
24228765 CCACCCATTC
** ** * *
24228775 GATCCCCGGCTTACGCATCCTGCCTCTCTGATCGGCTGAGTGCCTGCACGCTCGTTTTATGGGTT
1 GATCCCCGGCTTACGCATTATGCCTCTC-GATCGGCTGAGCACCCGCACGCTCGTTTCATGGGTT
24228840 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCTAGTCTAAGATC-
65 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC-AGTCTAAGATCA
* * * * * ** *
24228904 GAACCGGATCAAGGGTTTCGACAGTAGGATCGGCT-GCACGTAGGGGGGGTCGGGCCGATCCTCG
129 G-ACCGGATCGAGGGTTGCGACAGAAGGATC-GATAGCACGCAGGGGGGACCGGACCGATCCTCG
* * *
24228968 GCTTGCGCATTCTGCCTCTCCGG-CTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTCGCTTAG
192 GCTTACGCATTCTGCCTCTCCGGTC-GGCTGAGCGCCCGTACGCCCATTTCGTGGGTTGGCTTAG
*
24229032 GCATACGGAGTACATTCCATGTTTAAGCCCCAGTCGGA-TCGAGGGTTGTGGTAGTAGGACAGGC
256 GCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGACT-GA-GG--GT--T-GT-GG-CA---
* * * * *
24229096 TGCGGGATCGGTAGCACGCAGAGGGGGACCGGGTT
309 -GCGGGATCGATAGCACACGGAGGGGGACTGGGCT
** * ** ** *
24229131 GATCCCCGGCTTGTGCATTATGCCTCTCCAT----T-------TTCACGCTCGTTTTGTGGGTTA
1 GATCCCCGGCTTACGCATTATGCCTCTCGATCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTG
* * *
24229185 ACTTAGGCATACGGAGTTCATCCCCAGTTTAAGCATACGGAGCTCATTCCCAGTATAAGATCAGA
66 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * *
24229250 TCGGATCGAGGGTTGCGACAGAAGGATCGGTAGCACGCAGAGGGGACCGGACCGATCCTCGGCTT
131 CCGGATCGAGGGTTGCGACAGAAGGATCGATAGCACGCAGGGGGGACCGGACCGATCCTCGGCTT
* * *
24229315 ACGCATTTTGCCTCTCCGGTCGGCTAAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATA
196 ACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATA
* * *
24229380 GGGAGCT-CATTCCATGTCTAAGCCTCGGTCGGACTGAGGGTTGTGGCAGCGGGATCGATAGCAC
261 CGGAG-TACATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGATCGATAGCAC
*
24229444 ACGGAGGGGGACTGAGCT
325 ACGGAGGGGGACTGGGCT
* * * * *
24229462 GATCCCTGGCTTTCGCATTATGCCTCTTCGATCGGCTCAGCACCCGCACGCTTGTTTCGTGGGTT
1 GATCCCCGGCTTACGCATTATGCCTC-TCGATCGGCTGAGCACCCGCACGCTCGTTTCATGGGTT
* * *
24229527 GACTTATGCATACGAAGTTCATTCCCA-TCTAAG-AT-C---G---A-----A--C------CAG
65 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * ** * * *
24229570 A-C----CGAGGGTTACGTCAGCAA-GATCGATAGCACATAGGGGGGGATC-GAGTCGATCCCCG
130 ACCGGATCGAGGGTTGCGACAG-AAGGATCGATAGCACGCA-GGGGGGACCGGA-CCGATCCTCG
* * * * * * * ****
24229628 ACTTATGCATTCTACCTCTCTGGCCGACTGAGTGCCCGTACGATGGTTTCGTGGGTTGGCTTAGG
192 GCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCCCATTTCGTGGGTTGGCTTAGG
* * *
24229693 CATACGAAGTACATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCAGGATCGGTA
257 CATACGGAGTACATTCCATGTCTAAGCCCCAGTC-GGACTGAGGGTTGTGGCAGCGGGATC-G-A
24229757 GTGGTATCGACAGCACGTAGAGGGGGA-TCGGGCT
319 ----TA--G-CA-CACG--GAGGGGGACT-GGGCT
* * *
24229791 GATCCCCGGCTTACGCATTATGCCTCTTCCGATCGGCTGAGCGCCTGCACGCTCGTTTCATAGGT
1 GATCCCCGGCTTACGCATTATGCCTC-T-CGATCGGCTGAGCACCCGCACGCTCGTTTCATGGGT
* *
24229856 TGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCC
64 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-C
* * * * * ** * *
24229921 A-ACCGGATCGAGAGCTGCGACAGTAGGATCGACAGCACGCAGGGGGGACTGGGTCGATCCACAG
128 AGACCGGATCGAGGGTTGCGACAGAAGGATCGATAGCACGCAGGGGGGACCGGACCGATCCTCGG
* * * *
24229985 CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGC
193 CTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCCCATTTCGTGGGTTGGCTTAGGC
*
24230050 ATAGGGAGCT-CA-TCCATGTCTAAGCCCCA
258 ATACGGAG-TACATTCCATGTCTAAGCCCCA
24230079 ACCAGACCGA
Statistics
Matches: 759, Mismatches: 122, Indels: 135
0.75 0.12 0.13
Matches are distributed among these distances:
316 29 0.04
317 120 0.16
318 1 0.00
319 1 0.00
320 1 0.00
321 4 0.01
323 2 0.00
325 1 0.00
326 2 0.00
327 4 0.01
328 1 0.00
329 39 0.05
330 54 0.07
331 57 0.08
332 6 0.01
334 1 0.00
335 2 0.00
336 4 0.01
337 3 0.00
338 1 0.00
339 1 0.00
340 3 0.00
341 2 0.00
342 9 0.01
343 189 0.25
344 73 0.10
346 1 0.00
351 1 0.00
352 1 0.00
353 3 0.00
355 19 0.03
356 99 0.13
357 25 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (342 bp):
GATCCCCGGCTTACGCATTATGCCTCTCGATCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTG
ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCGGATCGAGGGTTGCGACAGAAGGATCGATAGCACGCAGGGGGGACCGGACCGATCCTCGGCTT
ACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATA
CGGAGTACATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCGGGATCGATAGCACA
CGGAGGGGGACTGGGCT
Found at i:24229549 original size:159 final size:157
Alignment explanation
Indices: 24229251--24229891 Score: 470
Period size: 158 Copynumber: 4.0 Consensus size: 157
24229241 AAGATCAGAT
* * * * * * * * * *
24229251 CGGATCGAGGGTTGCGACAGAAGGATCGGTAGCACGCAGA-GGGGACCG-GACCGATCCTCGGCT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACACGGAGGGGGATCGAG-CTGATCCCCGGCT
* * * * * * *
24229314 TACGCATTTTGCCTCTCCGGTCGGCTAAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCAT
65 TACGCATTATGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
24229379 AGGGAGCTCATTCCATGTCTAAGCCTCGG
130 ACGAAGTTCATTCCA-GTCTAAGCCTCGG
* * *
24229408 TCGGACTGAGGGTTGTGGCAGCGGGATCGATAGCACACGGAGGGGGA-CTGAGCTGATCCCTGGC
1 -CGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACACGGAGGGGGATC-GAGCTGATCCCCGGC
* * * * *
24229472 TTTCGCATTATGCCTCTTCGATCGGCTCAGCACCCGCACGCTTGTTTCGTGGGTTGACTTATGCA
64 TTACGCATTATGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* *
24229537 TACGAAGTTCATTCCCA-TCTAAG-ATCGAAC
129 TACGAAGTTCATT-CCAGTCTAAGCCTCG--G
* ** * * * *
24229567 CAGACCGAGGGTTACGTCAGCAAGATCGATAGCACATAGG-GGGGGATCGAG-TCGATCCCCGAC
1 CGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACA-CGGAGGGGGATCGAGCT-GATCCCCGGC
* * * ** * * * * * *
24229630 TTATGCATTCTACCTC-TCTGGCCGACTGAGTGCCCGTACGATGGTTTCGTGGGTTGGCTTAGGC
64 TTACGCATTATGCCTCTTC-GATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * *
24229694 ATACGAAGTACATTCCATGTCTAAGCCCCAG
128 ATACGAAGTTCATTCCA-GTCTAAGCCTCGG
*
24229725 CTGGACCGAGGGTTGTGGCAGCAGGATCGGTAGTGGTATCGACAGCACGTAGAGGGGGATCGGGC
1 C-GGACCGAGGGTTGTGGCAGCAGGATC-G-A----TA--G-CA-CACG--GAGGGGGATCGAGC
* * *
24229790 TGATCCCCGGCTTACGCATTATGCCTCTTCCGATCGGCTGAGCGCCTGCACGCTCGTTTCATAGG
53 TGATCCCCGGCTTACGCATTATGCCTCTT-CGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
24229855 TTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGC
117 TTGACTTAGGCATACGAAGTTCAT-TCCAGTCTAAGC
24229892 ATATGGAGTT
Statistics
Matches: 368, Mismatches: 84, Indels: 48
0.74 0.17 0.10
Matches are distributed among these distances:
157 9 0.02
158 144 0.39
159 109 0.30
160 6 0.02
161 1 0.00
165 2 0.01
167 1 0.00
168 3 0.01
169 2 0.01
170 1 0.00
171 32 0.09
172 54 0.15
173 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
CGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACACGGAGGGGGATCGAGCTGATCCCCGGCTT
ACGCATTATGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
CGAAGTTCATTCCAGTCTAAGCCTCGG
Found at i:24229894 original size:26 final size:26
Alignment explanation
Indices: 24229864--24229916 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24229854 GTTGACTTAG
24229864 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
24229890 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
24229916 G
1 G
24229917 ATCCAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:24231473 original size:26 final size:26
Alignment explanation
Indices: 24231443--24231495 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24231433 GTTGACTTAG
* *
24231443 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
24231469 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24231495 G
1 G
24231496 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24231968 original size:158 final size:158
Alignment explanation
Indices: 24231568--24231969 Score: 359
Period size: 158 Copynumber: 2.5 Consensus size: 158
24231558 CCTCGATTTA
* * * * * *
24231568 CGCATTCTACCTCTCCGGCCGGCTGAGCGGTCGCACGCCCGTTTCGTGGGTTGGCTTAGGCAAAG
1 CGCATTCTGCCTCTCCGGCCAGCTGAGC-GCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * * * * * *
24231633 GGAGCTTATTCCATGTTTAAGCCCTAGCCTGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGC
65 GGAGTTTATTCCATGTCTAAGACCTAGCCTGACCGAGGGCTGCGACAGCAAGATCGACAGCACGC
* *
24231698 AGTGGGGGATCAGGCCGATCCCCGGCTTG
130 AGAGGGGGATCAGGCCGATCACCGGCTTG
* * ** * * * *
24231727 CGCATTATGTCTCT-TTGCCAGC-GTAACGCCTGCACGCTCGTTCCGTGGGTTGACTTATGCATA
1 CGCATTCTGCCTCTCCGGCCAGCTG-AGCGCC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * * * * *
24231790 CGGTGTTCATTCCCA-ATCTAAGATC-AGACC-GAACCGAGGGCTGCGATAGCAAGATCGATAGC
64 CGGAGTTTATT-CCATGTCTAAGACCTAG-CCTG-ACCGAGGGCTGCGACAGCAAGATCGACAGC
* * *
24231852 ATGCA-AGGGGGA-CTGGGTCGATCACCGGCTTG
126 ACGCAGAGGGGGATC-AGGCCGATCACCGGCTTG
* * *
24231884 CGCATTCTGCCTCTCCGGTCAGCTGAGCGCACGCACGCTCGTTTCATGGGTTGGCTTAGGCATAT
1 CGCATTCTGCCTCTCCGGCCAGCTGAGCGC-CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
24231949 GGAGTTTATTCCATGTCTAAG
65 GGAGTTTATTCCATGTCTAAG
24231970 CATATGGAGC
Statistics
Matches: 186, Mismatches: 47, Indels: 21
0.73 0.19 0.08
Matches are distributed among these distances:
156 1 0.01
157 42 0.23
158 127 0.68
159 16 0.09
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CGCATTCTGCCTCTCCGGCCAGCTGAGCGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTTATTCCATGTCTAAGACCTAGCCTGACCGAGGGCTGCGACAGCAAGATCGACAGCACGCA
GAGGGGGATCAGGCCGATCACCGGCTTG
Found at i:24233943 original size:26 final size:26
Alignment explanation
Indices: 24233907--24233959 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24233897 GTTGACTTAG
24233907 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24233933 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24233959 G
1 G
24233960 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24234319 original size:25 final size:26
Alignment explanation
Indices: 24234272--24234326 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 26
24234262 TGGGTTGACT
24234272 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
24234298 TAAGTATAC-GAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
24234323 TAAG
1 TAAG
24234327 ATCGTATCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 19 0.70
26 8 0.30
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:24234547 original size:368 final size:365
Alignment explanation
Indices: 24233856--24235215 Score: 1511
Period size: 368 Copynumber: 3.7 Consensus size: 365
24233846 TGCGCATCCT
* * * * *
24233856 GCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCA
* * * * ** * * * *
24233921 TCCCCAGTCTAAGCATACGGAGTTCATTCCCATTCTAAGATCAAATCGGATTGAAGTTTGTGGCA
66 TCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGACA
* * * * * ** *
24233986 GCAGGATCGATAGCACGCAGGGGGGATCGGGCC-AACACCCGGCTTGCGCATTCTGCCTC-TCTG
130 GCAGGATCGACAGCACACAGGGGGCACCGGGCCGATC-CCCAACTTGCGCATTCTACCTCTTC-G
* * * * * *
24234049 GTCGGCTGAGCGCCCGCGCGCTCATTTCATGGGTTGGCTTAGGCATACAGAG-TACATTCCATGT
193 GTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGCT-CATTCCACGT
* * * *
24234113 CTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAAGACTGGCAGCAGGATCGACAGCACGTAGAG
257 CTAAGCCCCAGCAG-ACCGAGGGTTGTGGCAGCAGGACCGGCAACAGGATCGACAGCACGTAGAG
** **
24234178 GGGGATCGGGCTGATCCCCGGCTTATGTTTTATGCCTCTTCGGCCG
321 GGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTC-TCGGCCG
* * *
24234224 GCCTCTCCGGCCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCA
1 GCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCA
* * * ** *
24234289 TCCCCAGTCTAAGTATAC-GAGTTCATTCCCAGTCTAAGATCGTATCGGATTGAGGGTTGCGATA
66 TCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCGGACCGAGGGTTGCGACA
* ** ** *
24234353 GCAAGATCGACAGCACACAGGGTGG-ACCGGGCCGATCTTCGGCTTGCGCATTTTACCTCTTCGG
130 GCAGGATCGACAGCACACAGGG-GGCACCGGGCCGATCCCCAACTTGCGCATTCTACCTCTTCGG
* * * *
24234417 TCGACTGAGCACCCGCACACTTGTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTC
194 TCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGCT-CATTCCACGTC
* * * * *
24234481 TAAGCCCCCAGTCAGACCGAGGGTTGTGGTAGCAGGACCGACATCGGGATCGGCAGCACGTAGAG
258 TAAG-CCCCAG-CAGACCGAGGGTTGTGGCAGCAGGACCGGCAACAGGATCGACAGCACGTAGAG
**
24234546 GGGGATCGGGCTGATCCCCAACTTGCGCATTATGCCTCT---CCG
321 GGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCGGCCG
* * *
24234588 G-C-CT-------ACTGAGCGCCTGTACGATCATTTCGTGGGTTGACTTAGGCATACGAAGTTCA
1 GCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCA
* *
24234644 TCCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGC-AGC
66 TCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGA-C
* * * * *
24234708 AGCAGGATCGACAGCACATAGGGGGCACTGGGTCGATCCCCAACTTGCGCGTTCTGCCTCTTCGG
129 AGCAGGATCGACAGCACACAGGGGGCACCGGGCCGATCCCCAACTTGCGCATTCTACCTCTTCGG
* * *
24234773 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATA-GAGAGCTCATTCCATGTC
194 TCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGCATACG-GAGCTCATTCCACGTC
* *
24234837 TAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCAGGACCGGCAACCGGATCGACAGCACGTAGAGG
258 TAAGCCCCAG-CAGACCGAGGGTTGTGGCAGCAGGACCGGCAACAGGATCGACAGCACGTAGAGG
* * * *
24234902 GGGACCGAGCTGATCCCCGGCTTGCACATTATGCCTCTCTGGCAG
322 GGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTC-GGCCG
** * * * * *
24234947 GCCTCTCCGGCCGGTTGACCGCTCGCACGCTCGTTGCATGGGTTGACTTAGGCATACGAAGTTCA
1 GCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCA
*
24235012 TCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAGCCGGACCGAGGGTTGCGGCA
66 TCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-CCGGACCGAGGGTTGCGACA
** * * * ** *
24235077 GCAGGATCGACAGCACGTAGGGGGCATCGGGTCGATCCCTAACTTGCATATTCTACCTCTTCGAT
130 GCAGGATCGACAGCACACAGGGGGCACCGGGCCGATCCCCAACTTGCGCATTCTACCTCTTCGGT
* *
24235142 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGCATAGGGAGCTCATTCCATC-TCT
195 CGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGCTCATTCCA-CGTCT
24235206 AAGCCCCAGC
259 AAGCCCCAGC
24235216 TGGACAAAGG
Statistics
Matches: 847, Mismatches: 116, Indels: 59
0.83 0.11 0.06
Matches are distributed among these distances:
355 152 0.18
356 144 0.17
357 2 0.00
359 3 0.00
360 1 0.00
361 2 0.00
362 2 0.00
363 1 0.00
364 4 0.00
367 148 0.17
368 385 0.45
369 3 0.00
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (365 bp):
GCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCA
TCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGACAG
CAGGATCGACAGCACACAGGGGGCACCGGGCCGATCCCCAACTTGCGCATTCTACCTCTTCGGTC
GACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGCTCATTCCACGTCTAA
GCCCCAGCAGACCGAGGGTTGTGGCAGCAGGACCGGCAACAGGATCGACAGCACGTAGAGGGGGA
TCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCGGCCG
Found at i:24234660 original size:26 final size:26
Alignment explanation
Indices: 24234630--24234682 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24234620 GTTGACTTAG
24234630 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * * *
24234656 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
24234682 G
1 G
24234683 ACCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:24235035 original size:26 final size:26
Alignment explanation
Indices: 24234998--24235050 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24234988 GTTGACTTAG
24234998 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
24235024 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
24235050 G
1 G
24235051 ATCGAGCCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:24235503 original size:158 final size:158
Alignment explanation
Indices: 24235021--24235525 Score: 477
Period size: 158 Copynumber: 3.2 Consensus size: 158
24235011 ATCCCCAATC
* *
24235021 TAAGCATACGGAGTTCATTCCCA-GTCTAAGATC-GAGCCGGACCGAGGGTTGCGGCAGCAGGAT
1 TAAGCATACGGAGTTCATT-CCATGTCTAAGATCAGA-TCGGACAGAGGGTTGCGGCAGCAGGAT
* * ** * *
24235084 CGACAGCACGTAGGGGGCATCGGGTCGATCCCTAACTTGCATATTCTACCTCTTCGATCGGCTGA
64 CGACAGCACGTAGGGGGGATCGAGTCGATCCCCGACTTGCGTATTCTGCCTCTTCGATCGGCTGA
* *
24235149 GCGCCCGCACGCTCGTTTCATGGGTTGGCT
129 GCGCCCGTACGCTCGTTTCATGGCTTGGCT
* * * ** * * * * * *
24235179 TAAGCATAGGGAGCTCATTCCATCTCTAAGCCCCAGCT-GGACAAAGGATTGTGGCAACGGGATC
1 TAAGCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACAGAGGGTTGCGGCAGCAGGATC
* * * * *
24235243 GACAGCACGTAGAGGGGGACCGAG-CTGATCCTCGACTTGCGTATTATGCCTCTTCGGTCGGCTC
65 GACAGCACGTAG-GGGGGATCGAGTC-GATCCCCGACTTGCGTATTCTGCCTCTTCGATCGGCTG
*
24235307 AGCGGCCGCGT--GCTCGTTTCGTGGGC-TGGCT
128 AGC-GCC-CGTACGCTCGTTTCAT-GGCTTGGCT
* ** * ** *
24235338 TATGCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGATTGAGGGTTACGATAGTAGGATC
1 TAAGCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACAGAGGGTTGCGGCAGCAGGATC
* * * * * *
24235402 GACAGCATGCAGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG
65 GACAGCACGTAGGGGGGATCGAGTCGATCCCCGACTTGCGTATTCTGCCTCTTCGATCGGCTGAG
* *
24235467 CGCCCGTACGCTCATTTCATGGCTTAGCT
130 CGCCCGTACGCTCGTTTCATGGCTTGGCT
* *
24235496 TAGGCATACAGAGTTCATTCCATGTCTAAG
1 TAAGCATACGGAGTTCATTCCATGTCTAAG
24235526 CATACAGAGC
Statistics
Matches: 271, Mismatches: 61, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
156 3 0.01
157 12 0.04
158 140 0.52
159 105 0.39
160 9 0.03
161 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
TAAGCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACAGAGGGTTGCGGCAGCAGGATCG
ACAGCACGTAGGGGGGATCGAGTCGATCCCCGACTTGCGTATTCTGCCTCTTCGATCGGCTGAGC
GCCCGTACGCTCGTTTCATGGCTTGGCT
Found at i:24235529 original size:26 final size:26
Alignment explanation
Indices: 24235499--24235551 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24235489 CTTAGCTTAG
* *
24235499 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGCTAATTCCCA-GTCTAA
24235525 GCATACAGAGCTAATTCCCAGTCTAA
1 GCATACAGAGCTAATTCCCAGTCTAA
24235551 G
1 G
24235552 ATTTTGGGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTAATTCCCAGTCTAA
Found at i:24236256 original size:26 final size:26
Alignment explanation
Indices: 24236220--24236272 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24236210 GATCACTTAG
*
24236220 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
24236246 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24236272 G
1 G
24236273 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24236618 original size:26 final size:26
Alignment explanation
Indices: 24236589--24236641 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24236579 GTTGACGTAG
24236589 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
24236615 GCATATGGAGTTCATTCCCATTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
24236641 G
1 G
24236642 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:24236973 original size:26 final size:26
Alignment explanation
Indices: 24236943--24236995 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24236933 GTTGACTTAG
24236943 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
24236969 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24236995 G
1 G
24236996 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24237284 original size:341 final size:343
Alignment explanation
Indices: 24236148--24237633 Score: 1372
Period size: 343 Copynumber: 4.2 Consensus size: 343
24236138 CCACCCATTC
** ** * * ** * *
24236148 GATCCCCAACTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACCCTCATTTCGTGGGAT
1 GATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTT
* * *
24236213 CACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGA
66 GACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGG
* ** * *
24236278 ACCGGATCAAGGGTTGCGGTAGCAGGATCGATAGCAGGCAAGGGGGACCGGGCCAATCCTCGGCT
131 ACCGGATCGAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGGACCGGGCCAATCCTCGGCT
* * * *
24236343 AACGCATTTTGCCTTTTCGGCTGAATGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
196 TACGCATTCTGCCTTTCCGGCCGAATGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
* * * * *
24236408 ACGGAAGTACATTCCATGTCTAAGCCCCAACCGAATCGAGGGTTGTGGCAGTAGGACTGGTAGCA
261 ACGG-AGTACATTCCACGTCTAAGCCCCAGCCGGACCGAAGG-T-T---A-T-GG-C----AGCA
* *
24236473 GGATCGACAGCACGCAGAGGAGGACTGGGTT
313 GGATGGACAGCACGCAGAGGGGGACTGGGTT
* * * *
24236504 GATCCCCAGCTTACGTATTATGCCTCTCCGGCCGGCCTCTTCGGTCGACTGAGCACACGCATGCT
1 GATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGG------C--T-GA--GCGC-C-CGCATGCT
* * * * * * *
24236569 CATTTTGTTGGTTGACGTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCC
53 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * *
24236634 ATTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAGGATCGACAACACGCA-GGGGGATCGGG
118 AATCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGGACCGGG
* * * * * * * * * * *
24236698 TCGATCCCCGGCCTATGCATTTTGCCTTTCCGACTGAATGAGCACCCGCACGTTCATTTCATGGG
183 CCAATCCTCGGCTTACGCATTCTGCCTTTCCGGCCGAATGAGCGCCCGCACGCTCATTTCGTGGG
* * * * *
24236763 TTGGCTTAGGCAGACAGAGTACATTCCACGTCTAAGCCCCAGTCGGATCG-AGTGTTGTGGCAGC
248 TTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGAAG-GTTATGGCAGC
*
24236827 AGGACTGGCAGCGAGATCGACAGCACGTAGAGGGGGACCGGGTT
312 AGGA-TGG-A-C-AG--C-AC-G--C--AGAGGGGGACTGGGTT
* * * * * * *
24236871 GATCCACGACTTGCGCATTATGCCTCTCCGGCCGACTAAGCGCCCGTACGCTCGTTTCATGGGTT
1 GATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTT
** *
24236936 GACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCGGTCTAAGATCAG
66 GACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGG
* * * * *
24237001 ACTGGATCGAGGGTTACGACAGTAGGATCGGTAGCATGCAGGGGGGACCGGGCC-A-CCTCGGCT
131 ACCGGATCGAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGGACCGGGCCAATCCTCGGCT
* * *
24237064 TACGCATTCTGCCTCGT-CGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
196 TACGCATTCTGCCT-TTCCGGCCGAATGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCA
* * *
24237128 TACGGAGCACATTCCACGTCTAAGCCCCAGTCGGACCAAAGGTTATGGCAGCAGGATGGACAGCA
260 TACGGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGAAGGTTATGGCAGCAGGATGGACAGCA
*
24237193 CGCAGAGGGGGACTAGGTT
325 CGCAGAGGGGGACTGGGTT
* * *
24237212 GATCCCCGGCTTGCGCATTAGGCCTCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTT
1 GATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTT
* *
24237277 GACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATGGAGCTCATTCCCAATCTAAGATCGG
66 GACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGG
* * ** * * ** * *
24237342 GCCAGA-CTGAGGGTTGCGGTAACAGGATCGGTAGCACGCAGGGGGGATTGGGCCTATCC-CTGA
131 ACCGGATC-GAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGGACCGGGCCAATCCTC-GG
* * * * * * * *
24237405 CTTGCGCATTCTGTCTTTCCGGTCGACTGAGGGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGC
194 CTTACGCATTCTGCCTTTCCGGCCGAATGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
* * * * * * *
24237470 ATAGGGAGGT-CATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCGGGATCGG-CA
259 ATACGGA-GTACATTCCACGTCTAAGCCCCAGCCGGACCGAAGGTTATGGCAGCAGGAT-GGACA
* *
24237533 GCATGCAGAGGGGGA-TCGGGCT
322 GCACGCAGAGGGGGACT-GGGTT
* * ** * **
24237555 GACCCCCGGCTTGCGCATTATGCCTTTTTGGCTGGCTGAGTACCCGCATGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTT
* *
24237620 GGCTTAGGTATACG
66 GACTTAGGCATACG
24237634 GAGTACATTC
Statistics
Matches: 936, Mismatches: 157, Indels: 87
0.79 0.13 0.07
Matches are distributed among these distances:
340 1 0.00
341 172 0.18
342 4 0.00
343 192 0.21
344 3 0.00
345 1 0.00
346 2 0.00
347 1 0.00
349 2 0.00
350 1 0.00
351 1 0.00
352 3 0.00
353 105 0.11
354 109 0.12
355 19 0.02
356 33 0.04
357 1 0.00
358 2 0.00
359 4 0.00
360 2 0.00
361 3 0.00
362 3 0.00
363 1 0.00
364 1 0.00
365 4 0.00
366 2 0.00
367 76 0.08
368 80 0.09
369 108 0.12
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (343 bp):
GATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTT
GACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGG
ACCGGATCGAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGGACCGGGCCAATCCTCGGCT
TACGCATTCTGCCTTTCCGGCCGAATGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
ACGGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGAAGGTTATGGCAGCAGGATGGACAGCAC
GCAGAGGGGGACTGGGTT
Found at i:24237827 original size:26 final size:26
Alignment explanation
Indices: 24237798--24237850 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24237788 GGTGACTTAG
24237798 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24237824 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24237850 G
1 G
24237851 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24238245 original size:170 final size:171
Alignment explanation
Indices: 24237955--24238356 Score: 472
Period size: 170 Copynumber: 2.4 Consensus size: 171
24237945 CTGAACGCCA
* * * *
24237955 GCATAC-GAAGTACATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTTGTGGCAGCAAGACCGAC
1 GCATACAG-AGTACATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGACAGCAGGACCGAC
* * *** * *
24238019 AGTGGGATCGACAGCACGCAGAGGGGGATCGAACTGATCCCTGGCTTACGCATTATGCCT-TTCT
65 AGTGGGATCGACAGCACACAGAGGGGGACCGAACTGATCCCCAACTTACGCATTATGCCTCTGCG
* * *
24238083 GTCCAGCTGAGTACCCACATGCTCGTTTC-ATGGGTGGCTTAG
130 GT-CAGCTGAGCACCCACACGCTCGTTTCGATGGGTGACTTAG
* * **
24238125 GCATACAGAGTACATTCCACGTCTAAACCCCAGCCAGACCGAGGGTTGTGACAGCAGGACCGGTA
1 GCATACAGAGTACATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGACAGCAGGACCGACA
* *
24238190 GTGGGATCGACAGCACACAGAGGGGGACC-AGGCTGATCCCCAACTTACGCATTATGCGTCTGCG
66 GTGGGATCGACAGCACACAGAGGGGGACCGA-ACTGATCCCCAACTTACGCATTATGCCTCTGCG
* * * * *
24238254 GTCGGCTGAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAG
130 GTCAGCTGAGCACCCACACGCTCGTTTCGATGGGTGACTTAG
* * * *
24238296 GCATACAGAGGT-CATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTCACAGCGGGACC
1 GCATACAGA-GTACATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGACAGCAGGACC
24238357 AGCAGCATGC
Statistics
Matches: 196, Mismatches: 31, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
169 1 0.01
170 126 0.64
171 67 0.34
172 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.21
Consensus pattern (171 bp):
GCATACAGAGTACATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGACAGCAGGACCGACA
GTGGGATCGACAGCACACAGAGGGGGACCGAACTGATCCCCAACTTACGCATTATGCCTCTGCGG
TCAGCTGAGCACCCACACGCTCGTTTCGATGGGTGACTTAG
Found at i:24239722 original size:26 final size:26
Alignment explanation
Indices: 24239689--24239744 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
24239679 TTGGTTAACT
24239689 TAAGCATACAGAGTTCAGCCCCAGTC
1 TAAGCATACAGAGTTCAGCCCCAGTC
* **
24239715 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCAGCCCCAGTC
24239741 TAAG
1 TAAG
24239745 ATCGGATCGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (26 bp):
TAAGCATACAGAGTTCAGCCCCAGTC
Found at i:24239939 original size:349 final size:354
Alignment explanation
Indices: 24239303--24240423 Score: 1062
Period size: 349 Copynumber: 3.2 Consensus size: 354
24239293 TGATCGGCTG
* *
24239303 AGCGCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
1 AGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATA
** * *
24239368 CAAAGTTCATTCCTAGTCTAAGATCAGACTGGATCGAGGGTTGC-AGCAGCAGGATCGATAGCAC
66 CGGAGTTCATTCCCAGTCTAAGAT---AC-GGATCGAGGGTTGCGA-CAGCAGGATCGGTAGCAC
* * * * * * * *
24239432 GTAAGGGGGATCGGGCTGATCCCCGACTTGCGCATTCTACCTCTCCAGCCGGCTGAGTACCCGCA
126 G-CAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GGCAGCTGAGTGCCCGCA
* * * * ** **
24239497 TGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAACCCCAGCCAAACCG
189 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAATCGGACCG
* *
24239562 AGGGTTGTGGCAGC-AGGACCAGCAGTGGGATCGACCGCACGCAGAGGGGGACTAG-GCTGATCC
254 AGGGTTGTGGCAGCGA-GACGA-CAGTGGGATCGACAGCACGCAGAGGGGGA-TAGAGCTGATCC
*
24239625 CTGACTTTCGCATTATGCCTC-T-G-CAG-C-CGACT-A
316 CTGACTTACGCATTATGCCTCTTCGACAGCCTCGACTCA
* * * * *
24239658 AGCGCCCGCATGCTCGTTTCATTGGTTAACTTAAGCATACAGAGTTCAGCCCCAGTCTAAGCATA
1 AGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATA
* *
24239723 CGGAGTTCATTCCCAGTCTAAGAT-CGGATCGAGGGTTGCGACAGTAGGATCGGTAGCAAGCAGG
66 CGGAGTTCATTCCCAGTCTAAGATACGGATCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGG
* * *
24239787 GGGATCAAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGCTAGCTGAGTGCGCGCACGCTCG
131 GGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGC-AGCTGAGTGCCCGCACGCTCG
* * * * *
24239852 TTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTAAGCCCCATTTGGACTGAGGGTT
195 TTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAATCGGACCGAGGGTT
* * * *
24239917 GTGGCAGCGAGATCGACAGTGGGATTGGCAGCACGCAGAGGGGGATCGAGCTGATCCCTGGCTTA
260 GTGGCAGCGAGA-CGACAGTGGGATCGACAGCACGCAGAGGGGGATAGAGCTGATCCCTGACTTA
* *
24239982 CGCATTATGCCTCTTCGACCGGCCTCTTCGACTGGCCG
324 CGCATTATGCCTCTTCGA-CAG-C-C-TCGACT---CA
* * * * * *
24240020 AGCACCCGTACGATCGTTTCGTGGGTTGACTTAGGCATA-TGAAGTTTATCCCCAGTCTAAGCAT
1 AGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATCCCCAGTCTAAGCAT
* * *
24240084 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
65 ACGGAGTTCATTCCCAGTCTAAGAT---A-CGGATCGAGGGTTGCGACAGCAGGATCGGTAGCAC
** * * * *
24240149 GCAGGGGGGA-CTAGGCCGATCTTCGGCTTACGCATTCAGCCTCTCCGGCCGACTGAGCGCCCGC
126 GCA-GGGGGATC-AGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCAG-CTGAGTGCCCGC
* * * *
24240213 ACAC-CTGTTTTGTGGGTTGGCTTAGGCATAGGGAG-ATCATTCCATGCCTAAGCCCCAATCGGA
188 ACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTA-CATTCCATGTCTAAGCCCCAATCGGA
* * *
24240276 CCGAGGGTTGT-G-A-C---A-G-C---GGGACCGACAGCACGCAGAGGGGAATCGAGCTGATCC
251 CCGAGGGTTGTGGCAGCGAGACGACAGTGGGATCGACAGCACGCAGAGGGGGATAGAGCTGATCC
* * *
24240330 CCGACTTGCGCATTATGCCTCTTCG---G-C-CGGCTC-
316 CTGACTTACGCATTATGCCTCTTCGACAGCCTCGACTCA
* * * * ** *
24240363 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTTTTTCCCAGTCTAAG
1 AGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
24240424 ATCAGACCGG
Statistics
Matches: 643, Mismatches: 93, Indels: 72
0.80 0.12 0.09
Matches are distributed among these distances:
343 53 0.08
344 2 0.00
347 4 0.01
348 4 0.01
349 172 0.27
350 34 0.05
351 3 0.00
352 1 0.00
353 2 0.00
355 79 0.12
356 56 0.09
358 5 0.01
359 1 0.00
360 1 0.00
361 1 0.00
362 77 0.12
365 1 0.00
366 1 0.00
367 38 0.06
368 108 0.17
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (354 bp):
AGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATACGGATCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGG
GGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCAGCTGAGTGCCCGCACGCTCGT
TTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTG
TGGCAGCGAGACGACAGTGGGATCGACAGCACGCAGAGGGGGATAGAGCTGATCCCTGACTTACG
CATTATGCCTCTTCGACAGCCTCGACTCA
Found at i:24240083 original size:26 final size:26
Alignment explanation
Indices: 24240054--24240106 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24240044 GTTGACTTAG
* *
24240054 GCATATGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
24240080 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24240106 G
1 G
24240107 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24240423 original size:159 final size:158
Alignment explanation
Indices: 24240080--24240583 Score: 381
Period size: 159 Copynumber: 3.2 Consensus size: 158
24240070 CCCAGTCTAA
* * * *
24240080 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCGACAGCAGGACCGACA
* * ** * *
24240145 GCACGCAGGGGGGACTAGGCCGATCTTCGGCTTACGCATTCAGCCTCTCCGGCCGACTGAGCGCC
66 GCACGCAGAGGGGAATAGGCCGATCCCCGACTTACGCATTCAGCCTCTCCGGCCGACTCAGCGCC
* *
24240210 CGCACACCTGTTTTGTGGGTTGGCTTAG
131 CGCACACCTGTTTCGTGGGTTGACTTAG
* * * * * * *
24240238 GCATAGGGAGATCATT-CCATGCCTAAGCCCCA-ATCGGACCGAGGGTTGTGACAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCGGACCGAGGGTTGCGACAGCAGGACCGA
* * * * *
24240301 CAGCACGCAGAGGGGAATCGAGCTGATCCCCGACTTGCGCATT-ATGCCTCTTCGGCCGGCTCAG
64 CAGCACGCAGAGGGGAATAG-GCCGATCCCCGACTTACGCATTCA-GCCTCTCCGGCCGACTCAG
* * *
24240365 CGCCCGTAC-GCTCGTTTCGTGGGTTGACTTAT
127 CGCCCGCACACCT-GTTTCGTGGGTTGACTTAG
** * * * * * * *
24240397 GCATACGGAGTTTTTTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCCATAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCGACAGCAGGACCGACA
* * * *** * * * ** * * * * *
24240462 GTACGTAGTGGGGGACCGGGTCGATCTCTGACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGTGC
66 GCACGCAG-AGGGGAATAGGCCGATCCCCGACTTACGCATTCAGCCTCTCCGGCCGACTCAGCGC
* * *
24240527 CCGCAC-GCTCGTTTCATTGGTT-AGCTTAG
130 CCGCACACCT-GTTTCGTGGGTTGA-CTTAG
* *
24240556 GCATACGGAGCTCATTCCCAATCTAAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGA
24240584 TTTTGAGCCA
Statistics
Matches: 269, Mismatches: 67, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 68 0.25
159 189 0.70
160 9 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCGACAGCAGGACCGACA
GCACGCAGAGGGGAATAGGCCGATCCCCGACTTACGCATTCAGCCTCTCCGGCCGACTCAGCGCC
CGCACACCTGTTTCGTGGGTTGACTTAG
Found at i:24241281 original size:26 final size:26
Alignment explanation
Indices: 24241251--24241303 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24241241 GTTGACTTAG
*
24241251 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
*
24241277 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
24241303 G
1 G
24241304 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:24241478 original size:26 final size:26
Alignment explanation
Indices: 24241448--24241500 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24241438 GTTGACTTAG
24241448 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
24241474 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24241500 G
1 G
24241501 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24241579 original size:197 final size:197
Alignment explanation
Indices: 24241217--24241587 Score: 564
Period size: 197 Copynumber: 1.9 Consensus size: 197
24241207 TGGTCGGCTA
* * *
24241217 AGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
1 AGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATA
* * * *
24241282 CGGACTTCATTCCCAGTCTAAGATCGAATCGGATCGAGTGTTGCGACAGCAAGATCGATAGCACG
66 CGGACTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAACAAGATCGATAGCACA
* * * * * *
24241347 TAGGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGATGTTTTCGACCAAC
131 CAAGGGGGACCGGGCCAATCCTCAGCTTACGCATTCTGCCTCTCCGACCGATGTTTTCGACCAAC
24241412 TG
196 TG
*
24241414 AGCGCCCGCACACTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATA
1 AGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATA
* * *
24241479 CGGAGTTCATTCCCAGTCTAAGATC-AGACCGGATCGAGGGTTGCGACAACAGGATCGGTAGCAC
66 CGGACTTCATTCCCAGTCTAAGATCGA-ACCGGATCGAGGGTTGCGACAACAAGATCGATAGCAC
*
24241543 ACAAGGGGGACCGGGCCAATCCTCAGCTTGCGCATTCTGCCTCTC
130 ACAAGGGGGACCGGGCCAATCCTCAGCTTACGCATTCTGCCTCTC
24241588 TGGCCAGCTG
Statistics
Matches: 155, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
196 1 0.01
197 154 0.99
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.23
Consensus pattern (197 bp):
AGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATA
CGGACTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAACAAGATCGATAGCACA
CAAGGGGGACCGGGCCAATCCTCAGCTTACGCATTCTGCCTCTCCGACCGATGTTTTCGACCAAC
TG
Found at i:24241833 original size:26 final size:25
Alignment explanation
Indices: 24241803--24241852 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
24241793 GTTGACTTAG
24241803 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCA-TCTAA
*
24241829 GCATACGAAGTTCATTCCCATCTA
1 GCATACGAAGTTCATCCCCATCTA
24241853 GGATCAGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (25 bp):
GCATACGAAGTTCATCCCCATCTAA
Found at i:24242158 original size:158 final size:157
Alignment explanation
Indices: 24241952--24242328 Score: 399
Period size: 158 Copynumber: 2.4 Consensus size: 157
24241942 CGACTGGTTG
* * * *
24241952 AGCGCCCGCACGCCCATTTCGTGGTTGGCTTAGGCATAGTGAA-CTCATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCTCGTTTCGTGGTTGGCTTAAGCATA-TGAAGTTCATTCCATGTCTAAGCCCC
* * * * *
24242016 AATCAGA-CAGAGGGTTGTGGTAGC-GAAACCGACAGCACGCAGAGGGGGATCGGG-CTGATCCT
65 AATCAGAGC-GAAGGTTGCGGCAACAG-AACCGACAGCACGCA-AGGGGGACCGGGTC-GATCCT
*
24242078 CGACTTGCACATTATGCCTCTTCG-TCCGGCTC
126 CGACTTGCACATTATGCCTCTCCGAT-CGGCTC
* * * * **
24242110 TG-GCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAGATC
1 AGCGCCCGCACGCTCGTTTCGT-GGTTGGCTTAAGCATATGAAGTTCATT-CCATGTCTAAGCCC
** * ** *
24242173 GGATCAGAGCGAAGGTTGCGGCAACAGGATTGACAGCACGCAAGGGGGACCGGGTCGATCCTCGG
64 CAATCAGAGCGAAGGTTGCGGCAACAGAACCGACAGCACGCAAGGGGGACCGGGTCGATCCTCGA
* *
24242238 CTTGCACATTTTGCCTCTCCGATCGGCTG
129 CTTGCACATTATGCCTCTCCGATCGGCTC
*
24242267 AGCGCCCGCACGCTCGTTTCGTTGGTTGGCTTAAGCATATGGAGTTCATTCCATGTCTAAGC
1 AGCGCCCGCACGCTCGTTTCG-TGGTTGGCTTAAGCATATGAAGTTCATTCCATGTCTAAGC
24242329 ATACGGAGCT
Statistics
Matches: 180, Mismatches: 29, Indels: 20
0.79 0.13 0.09
Matches are distributed among these distances:
157 67 0.37
158 107 0.59
159 6 0.03
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (157 bp):
AGCGCCCGCACGCTCGTTTCGTGGTTGGCTTAAGCATATGAAGTTCATTCCATGTCTAAGCCCCA
ATCAGAGCGAAGGTTGCGGCAACAGAACCGACAGCACGCAAGGGGGACCGGGTCGATCCTCGACT
TGCACATTATGCCTCTCCGATCGGCTC
Found at i:24242351 original size:26 final size:26
Alignment explanation
Indices: 24242298--24242353 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
24242288 TTGGTTGGCT
* * *
24242298 TAAGCATATGGAGTTCATTCCATGTC
1 TAAGCATACGGAGCTCATTCCATATC
24242324 TAAGCATACGGAGCTCATTCCCA-ATC
1 TAAGCATACGGAGCTCATT-CCATATC
24242350 TAAG
1 TAAG
24242354 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGCTCATTCCATATC
Found at i:24244208 original size:26 final size:26
Alignment explanation
Indices: 24244178--24244230 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24244168 GTTGACTTAG
* *
24244178 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATACCCAATCTAA
*
24244204 GCATACGGAGTTCATACCCAATCTAA
1 GCATACGAAGTTCATACCCAATCTAA
24244230 G
1 G
24244231 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAATCTAA
Found at i:24244957 original size:366 final size:353
Alignment explanation
Indices: 24244148--24245267 Score: 1177
Period size: 366 Copynumber: 3.2 Consensus size: 353
24244138 CGTCTGAGCA
*
24244148 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATCCCCAGTCTAAGCATACGGA
* * * * * * *
24244213 GTTCATACCCAATCTAAGATCGGATCGAATCGAGGGTTGTGGCAGTAAGATCGGTAGCACGTATG
65 GTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGTGACAGTAGGATCGGTAGCACGCAAG
** * * *
24244278 AGGGACTGGAACTGATCCCCGACTTGCGCGTTCTGCCTCTCCGGTCGGCTGAG-AGCCTTCACGC
130 AGGGACTGGGCCT-ATCCCCGGCTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCA-CCTACACGC
* * *
24244342 TCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCTCCAG-CTAGACCGAT
192 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTC-AGACCGAG
* * * * * *
24244406 CGTTGTGGCAGCGGGACTGGCAGCGGCCTCAGCAGCACGCAGAGGGGGATCGAGTTGATCCTCGG
256 GGTTGTGGCAGCAGGACTGACAGCGGCATCAGCAGCACGCAGAGAGGGATCGAGCTGATCCTCGG
** *
24244471 CTTGTGCATTATGCCTCTTCGACCGATTGAGTG
321 CTTGCACATTATGCCTCTTCGACCGACTGAGTG
* * *
24244504 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAAATGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATCCCCAGTCTAAGCATACGGA
* *
24244569 GTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTATGACAGTAGGATC-GTAGCACGCAAG
65 GTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGTGACAGTAGGATCGGTAGCACGCAAG
* * *
24244633 AGGGACTGGGCCTATCCCCGGCTTGCGTATTCTGCCTCTCCAATCGACTGAGCACCTACACGCTC
130 AGGGACTGGGCCTATCCCCGGCTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCACCTACACGCTC
* *
24244698 ATTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGTCAGACCGAGGGT
194 ATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCAGACCGAGGGT
* * *
24244763 TGTGG-AGCAGGA-TCGACAGTGGGATC-GACAGCACGCAGAGAGGGATCGGGCTGATCCTCGGC
259 TGTGGCAGCAGGACT-GACAGCGGCATCAG-CAGCACGCAGAGAGGGATCGAGCTGATCCTCGGC
24244825 TTGCACATTATGCCTCTCTGGCTGACCTCTCCAGCCGACTGAGTG
322 TTGCACATTATGCCTCT-T--C-G--------A-CCGACTGAGTG
*
24244870 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATCCCCAGTCTAAGCATACGGA
* * * * * *
24244935 GTTCATTCCCAATCTCAGATCAGATCGGACCAAGGGTTGCGATAGTAGGATCGGCAGCACGCAAG
65 GTTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGTGACAGTAGGATCGGTAGCACGCAAG
* * * * * * * * * * * *
24245000 -GGGACCGGGCCGATCCTCAGCTTACGCATTCTGCGTCTCCGTCGGCTAAGCGCCCACACTCCCG
130 AGGGACTGGGCCTATCCCCGGCTTGCGCATTCTGCCTCTCCGTCGGCTGAGCACCTACACGCTCA
* * * *
24245064 TTTTGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGTCGGACTGAGGGT
195 TTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAGTCAGACCGAGGGT
* *
24245128 TGTGGCAGC-GG---GAC--C-G-----GCAGCACGCAGAGGGGGACCGAG-TCGAT-CTCTGGC
259 TGTGGCAGCAGGACTGACAGCGGCATCAGCAGCACGCAGAGAGGGATCGAGCT-GATCCTC-GGC
* * * * * *
24245179 TTGCGCATTATGCGTCTTCGATCGGCTTAGCG
322 TTGCACATTATGCCTCTTCGACCGACTGAGTG
* * * **
24245211 CCCGCATGCTCATTTCGTGGGTTGACTTATGCATACGAAGTTCATTACCAGTCTAAG
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATCCCCAGTCTAAG
24245268 ATCAGACCAG
Statistics
Matches: 651, Mismatches: 89, Indels: 63
0.81 0.11 0.08
Matches are distributed among these distances:
340 1 0.00
341 56 0.09
342 1 0.00
350 1 0.00
351 1 0.00
352 2 0.00
353 65 0.10
354 146 0.22
355 24 0.04
356 105 0.16
357 2 0.00
359 1 0.00
362 3 0.00
365 80 0.12
366 152 0.23
367 11 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (353 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATCCCCAGTCTAAGCATACGGAG
TTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGTGACAGTAGGATCGGTAGCACGCAAGA
GGGACTGGGCCTATCCCCGGCTTGCGCATTCTGCCTCTCCGTCGGCTGAGCACCTACACGCTCAT
TTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTG
TGGCAGCAGGACTGACAGCGGCATCAGCAGCACGCAGAGAGGGATCGAGCTGATCCTCGGCTTGC
ACATTATGCCTCTTCGACCGACTGAGTG
Found at i:24245256 original size:159 final size:158
Alignment explanation
Indices: 24244981--24245426 Score: 406
Period size: 159 Copynumber: 2.8 Consensus size: 158
24244971 TTGCGATAGT
* * * * * *
24244981 AGGATCGGCAGCACGCA-A-GGGGACCGGGCCGATCCTCAGCTTACGCATTCTGCGTCTCCGTCG
1 AGGACCGGCAGCACGCAGAGGGGGACC-GGTCGATCCTCGGCTTGCGCATTATGCGTCTTCGTCG
* * * * * *
24245044 GCTAAGCGCCCACACTCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAG
65 GCTAAGCGCCCGCACTCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
* * * * ***
24245109 CCCCAG-TCGGACTGAGGGTTGTGGCAGC
130 CACCAGACCAGACCGAGGGTTACAGCAGC
*
24245137 GGGACCGGCAGCACGCAGAGGGGGACCGAGTCGAT-CTCTGGCTTGCGCATTATGCGTCTTCGAT
1 AGGACCGGCAGCACGCAGAGGGGGACCG-GTCGATCCTC-GGCTTGCGCATTATGCGTCTTCG-T
* * * *
24245201 CGGCTTAGCGCCCGCA-TGCTCATTTCGTGGGTTGACTTATGCATACGAAGTTCATTACCA-GTC
63 CGGCTAAGCGCCCGCACT-CTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTC
* *
24245264 TAAG-ATCAGACCAGACCGAGGGTTACAGTAGC
126 TAAGCACCAGACCAGACCGAGGGTTACAGCAGC
* *** * * * * *
24245296 AGGATCAATAGCACGTAG-GGGGGACCGGTCGATCCCTCGGCTTGTGCATTGTACCTCTTCGGTC
1 AGGACCGGCAGCACGCAGAGGGGGACCGGTCGAT-CCTCGGCTTGCGCATTATGCGTCTTC-GTC
* * * *
24245360 -ACTGAGCACCCGCACTCTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAA
64 GGCTAAGCGCCCGCACTCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
24245424 GCA
129 GCA
24245427 TACGGAGCTC
Statistics
Matches: 233, Mismatches: 43, Indels: 26
0.77 0.14 0.09
Matches are distributed among these distances:
156 18 0.08
157 63 0.27
158 66 0.28
159 83 0.36
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
AGGACCGGCAGCACGCAGAGGGGGACCGGTCGATCCTCGGCTTGCGCATTATGCGTCTTCGTCGG
CTAAGCGCCCGCACTCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
ACCAGACCAGACCGAGGGTTACAGCAGC
Found at i:24245536 original size:11 final size:11
Alignment explanation
Indices: 24245520--24245546 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
24245510 CCCGGGGTAC
24245520 CATCGTCGGAG
1 CATCGTCGGAG
24245531 CATCGTCGGAG
1 CATCGTCGGAG
24245542 CATCG
1 CATCG
24245547 CCAGAGAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:24246483 original size:159 final size:158
Alignment explanation
Indices: 24246172--24246501 Score: 381
Period size: 159 Copynumber: 2.1 Consensus size: 158
24246162 ACGGTGTTTG
* * * * *
24246172 TTCCCAGTCTAAGATCAGACTGGATCAAGGGTTGCGGCAATAGGATCGGCAGCACACAGGGGGGA
1 TTCCAAGTCTAAGATCAGACTGGACCAAGGGTTACGGCAACAGGATCGACAGCACACAGGGGGGA
* * * ** ** * *
24246237 CCGGGTCGATCCCCGGTTTGCACATTCTGCCTTTTTGATTGGCTGAGCGCCCGCACGCTCATTTC
66 CCGGGTCGACCCCCGGCTTGCACATTCTGCCCTTCCGACCGGCTGAGCACCCGCACACTCATTTC
*
24246302 CTAGGTTGGCTTAGGCATATGGAGTTCA
131 CTAGGTTGGCTTAGGCAGATGGAGTTCA
* * * * *
24246330 TTCCAAGTCTAAGATCAGACTGGACCAAGGGTTACGGTAGCAGGATCGATAGCACGCTGGGGGGG
1 TTCCAAGTCTAAGATCAGACTGGACCAAGGGTTACGGCAACAGGATCGACAGCACAC-AGGGGGG
* ** * * * *
24246395 ACCGGGTTGACCCCCGGCTTGTGCGTTCTGCCCTTCCGACCGGTTGAGCACCCGTACACTCGTTT
65 ACCGGGTCGACCCCCGGCTTGCACATTCTGCCCTTCCGACCGGCTGAGCACCCGCACACTCATTT
* *
24246460 CGTGGGTTGGCTTAGGCAGATGGAGTTCA
130 CCTAGGTTGGCTTAGGCAGATGGAGTTCA
*
24246489 TTCCATGTCTAAG
1 TTCCAAGTCTAAG
24246502 CATACGGAGC
Statistics
Matches: 141, Mismatches: 30, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
158 48 0.34
159 93 0.66
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (158 bp):
TTCCAAGTCTAAGATCAGACTGGACCAAGGGTTACGGCAACAGGATCGACAGCACACAGGGGGGA
CCGGGTCGACCCCCGGCTTGCACATTCTGCCCTTCCGACCGGCTGAGCACCCGCACACTCATTTC
CTAGGTTGGCTTAGGCAGATGGAGTTCA
Found at i:24247244 original size:26 final size:26
Alignment explanation
Indices: 24247208--24247259 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24247198 GTTGACTTAG
*
24247208 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24247234 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24247260 AATTGAATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24247758 original size:26 final size:26
Alignment explanation
Indices: 24247722--24247774 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24247712 GTTGACTTAG
24247722 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24247748 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24247774 G
1 G
24247775 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24249481 original size:26 final size:26
Alignment explanation
Indices: 24249452--24249504 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24249442 GTTGACTTAG
* * *
24249452 GCATACTGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
24249478 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24249504 G
1 G
24249505 ATCAAATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24249696 original size:354 final size:362
Alignment explanation
Indices: 24249058--24249898 Score: 937
Period size: 354 Copynumber: 2.3 Consensus size: 362
24249048 CTCTCCAACT
* ** * * *
24249058 GGCTGAATGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGCA-TTCATCCCTAGTCTA
1 GGCTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAAGTTCATCCCCAGTCTA
* * * * * *
24249122 AGCATACAGAGTTTATTCCCAGTCTAAGATTAGACCGGATC-ATGGGTTACGGTAGCAGGATCGA
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGA-GGGTTGCGGCAGCAAGATCGA
* * * * * *
24249186 CAGCACGCAAGGAGGATCAGGTCGATCTCCGGCTTATGCATTCCACCTCTCTGGTCGGCTGAGTG
130 CAGCACACAAGGAGGATCAGGCCAATCTCCGGCTTATGCATTCCACCTCTCCGGTCAGCTGAGTA
* * ** * *
24249251 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCTAGTC
195 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCAGCC
* * * **
24249316 GGACAGAGGGTTGTGGCAGTAGGACCGATAGCGAG-ATTGACAGCATGC-AGAGGGGGA-CTGGG
260 GAACAGAGGGTTGTGGCAGTAGGACCGACAGCG-GTA-TCA-AAAATGCGAGAGGGGGATCT-GG
*
24249378 TTCATCCCCGGCTT-G-C-A-C-ATT-AT-GCCTCTCCGG-C
321 TTCATCCCCGACTTCGACTACCTATTCATCGCCTCTCCGGTC
* * *
24249412 AGGTTGAGTGCCCACACGCTGGTTTCGTGGGTTGACTTAGGCATACTG-AGTTTATCCCCAGTCT
1 -GGCTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAAGTTCATCCCCAGTCT
* * ** * *
24249476 AAGCATACGGAGTTCATTCCCAATCTAAGATCAAATTGGATCGAGGGTTGCGGCCGTAAGATCGA
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAAGATCGA
* * *** *
24249541 CAGCACAC-AGGGGGATC-GAGCCAATC-CTCGGGTT-TCGCATTTTGCCTCTCCGGTCAGTTGA
130 CAGCACACAAGGAGGATCAG-GCCAATCTC-CGGCTTAT-GCATTCCACCTCTCCGGTCAGCTGA
*
24249602 GTACCCGCACGCTCGTTTCATTGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCA
192 GTACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCA
*
24249667 GCCGAACCGAGGGTTGTGGCAGTAGGACCGACAGCGGTATCAAAAATGCGTAGAGGGGGATCTGG
257 GCCGAACAGAGGGTTGTGGCAGTAGGACCGACAGCGGTATCAAAAATGCG-AGAGGGGGATCTGG
* *
24249732 TTGATCCCCGACTTCGACGTTATGCCTTTTCGATCGGCCTCTCCGGTC
321 TTCATCCCCGACTTCGAC--TA--CCTATTC-ATC-GCCTCTCCGGTC
* * *
24249780 GGCTGAGTGCCCACACGCTCATTTCATGGGTTGACTTAGGTATA-TGAAGTTCATCCCCAGTCTA
1 GGCTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAAGTTCATCCCCAGTCTA
24249844 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAG
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAG
24249899 GGGGATCGGT
Statistics
Matches: 403, Mismatches: 59, Indels: 36
0.81 0.12 0.07
Matches are distributed among these distances:
352 5 0.01
353 6 0.01
354 152 0.38
355 114 0.28
356 2 0.00
359 1 0.00
362 1 0.00
363 2 0.00
365 2 0.00
366 2 0.00
367 115 0.29
368 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (362 bp):
GGCTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAAGTTCATCCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAAGATCGAC
AGCACACAAGGAGGATCAGGCCAATCTCCGGCTTATGCATTCCACCTCTCCGGTCAGCTGAGTAC
CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCAGCCG
AACAGAGGGTTGTGGCAGTAGGACCGACAGCGGTATCAAAAATGCGAGAGGGGGATCTGGTTCAT
CCCCGACTTCGACTACCTATTCATCGCCTCTCCGGTC
Found at i:24250240 original size:26 final size:26
Alignment explanation
Indices: 24250204--24250256 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24250194 GTTGACTTAG
*
24250204 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24250230 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24250256 G
1 G
24250257 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24250602 original size:26 final size:26
Alignment explanation
Indices: 24250572--24250650 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
24250562 GTTGACTTAG
24250572 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24250598 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
24250624 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24250650 G
1 G
24250651 ATCGGATCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24250730 original size:394 final size:394
Alignment explanation
Indices: 24250204--24251018 Score: 1066
Period size: 394 Copynumber: 2.1 Consensus size: 394
24250194 GTTGACTTAG
24250204 GCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGAT
1 GCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGAT
* * ** * ** *
24250269 TGAGGGTTGCGACAGTAGGATCGGCAGCACGCTAGGGGGACCAGGCCGATCCTTAGCTTGCGCAT
66 CGAGGGTTACGACAACAGGATCAGCAGCACGCTAGGGGGACCAGGCCGATCCCCAGCTTACGCAT
* * * * * *
24250334 TCTGCTTCTCCATCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAAAGAGT
131 TCTACCTCTCCAGCCGACTGAACGCCCACACACTCGTTTCGTGGGTTGGCTTAGGCATAAAGAGT
* * *
24250399 ACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCGAGATCGAC
196 ACATTCCACGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCAGCAACGAGATCGAC
** * * * *
24250464 AGCACGCAGAGGGGGA-TCGGGTTGAT-CCTCGGCTTGCGCATTATTCCTCTCC-GATCGGCCTC
261 AGCACGCAGAGGGGGACT-GGACTGATCCCT-GGCTTGCGCATTATGCCTCTCCAGCT-AGCCTA
* * *
24250526 TCCG-GCTGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC
323 TCCGATC-GGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC
*
24250590 CAATCTAA
387 CAATATAA
* *
24250598 GCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGA-TCGGA
1 GCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACT-GGA
* * * *
24250662 TCGAGGGTTACGACAACAGGATCAGCAGCACG-TAGGGGGGATCTGGTCGATCCCCAGCTTATGC
65 TCGAGGGTTACGACAACAGGATCAGCAGCACGCTA-GGGGGACCAGGCCGATCCCCAGCTTACGC
* ** * * **
24250726 ATTCTACCTCTCCGGCTTACTGAATGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
129 ATTCTACCTCTCCAGCCGACTGAACGCCCACACACTCGTTTCGTGGGTTGGCTTAGGCATAAAGA
* * * * * *
24250791 GTACATTCCATGTCTAAGCCCTAGCCAGACTGAGGGTTGTGGTAGCAGGACCAGTAACGGGATCG
194 GTACATTCCACGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCAGCAACGAGATCG
* *
24250856 GCAGCATGCAGAGGGGGACTGGACTGATCCCTGGCTTGCGCATTATGCCTCTCCAGCTAGCCTAT
259 ACAGCACGCAGAGGGGGACTGGACTGATCCCTGGCTTGCGCATTATGCCTCTCCAGCTAGCCTAT
**
24250921 CCGATCGGCTGAGCGCCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA
324 CCGATCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
24250986 ATATAA
389 ATATAA
* *
24250992 GCATGCGGAGTTCATTCCCAGTCTAAG
1 GCATACGGAGTTCATCCCCAGTCTAAG
24251019 ATCGAACCTG
Statistics
Matches: 362, Mismatches: 53, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
393 3 0.01
394 352 0.97
395 7 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (394 bp):
GCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGAT
CGAGGGTTACGACAACAGGATCAGCAGCACGCTAGGGGGACCAGGCCGATCCCCAGCTTACGCAT
TCTACCTCTCCAGCCGACTGAACGCCCACACACTCGTTTCGTGGGTTGGCTTAGGCATAAAGAGT
ACATTCCACGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGACCAGCAACGAGATCGAC
AGCACGCAGAGGGGGACTGGACTGATCCCTGGCTTGCGCATTATGCCTCTCCAGCTAGCCTATCC
GATCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAAT
ATAA
Found at i:24251377 original size:21 final size:21
Alignment explanation
Indices: 24251351--24251401 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
24251341 GTCTAAGCCC
24251351 CAGCCAGACTGAGAGTTGTGG
1 CAGCCAGACTGAGAGTTGTGG
*
24251372 CAGCCAGACTGAGGGTTGTGG
1 CAGCCAGACTGAGAGTTGTGG
*
24251393 CAGCGAGAC
1 CAGCCAGAC
24251402 CGACAAAACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.24, C:0.22, G:0.39, T:0.16
Consensus pattern (21 bp):
CAGCCAGACTGAGAGTTGTGG
Found at i:24252796 original size:26 final size:26
Alignment explanation
Indices: 24252760--24252812 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24252750 GTTAACTTAG
24252760 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
24252786 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24252812 G
1 G
24252813 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24253128 original size:159 final size:158
Alignment explanation
Indices: 24252786--24253288 Score: 390
Period size: 159 Copynumber: 3.2 Consensus size: 158
24252776 CCTAGTCTAA
* **
24252786 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCCAACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * ** * * * * * *
24252851 GCATGCAGGGGGGATCGGGTCGATCCTTGGCTTACGCATTCTACCTTTTCAATCGGCTGAGCGCC
66 GCACGCAGGAGGGATCGGGTCGATCCCCGACTTACCCATTATACCTCTTCAACCGGCTCAGCGCC
*
24252916 CGCACGCCCGTTTCATGGGTTGGCTTAG
131 CGCACGCCCGTTTCATGGGTTGACTTAG
* * * * * * *
24252944 GCAT-GGGTGGCTCATT-CCATGTCTAAGCCCCAATCGGATCGAGGGTTGCGGCAGCGGGATCGG
1 GCATACGG-AGTTCATTCCCA-GTCTAAGACCCAACCGGATCGAGGGTTGCGGCAGCAGGATCGA
* * ** *
24253007 CAGCACGCAGAGAGGGA-CTGGG-CTGATCCCCGACTTGCCCATTATGCCTCTTCGGCCGGTTCA
64 CAGCACGCAG-GAGGGATC-GGGTC-GATCCCCGACTTACCCATTATACCTCTTCAACCGGCTCA
* * * * *
24253070 GCGCCTGCATGCTCGTTTCGTGGGTTGACTTAT
126 GCGCCCGCACGCCCGTTTCATGGGTTGACTTAG
* ** * *
24253103 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CTGAGGGTTGCGGCAGTAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGACCCAACCGGATC-GAGGGTTGCGGCAGCAGGATCGAC
* * * * * * ** * * * ** * *
24253167 AGCACCCCGGAGGGGACCAGGTCGAT-CCCAAGCTTGCGTATTCTGCCTCTCCAGTCGACTGAGC
65 AGCACGCAGGA-GGGATCGGGTCGATCCCCGA-CTTACCCATTATACCTCTTCAACCGGCTCAGC
* * *
24253231 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGCCCGTTTCATGGGTTGACTTAG
24253262 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
24253289 CAGACGGAGC
Statistics
Matches: 272, Mismatches: 60, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 5 0.02
158 67 0.25
159 193 0.71
160 7 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCCAACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGAGGGATCGGGTCGATCCCCGACTTACCCATTATACCTCTTCAACCGGCTCAGCGCC
CGCACGCCCGTTTCATGGGTTGACTTAG
Found at i:24254536 original size:367 final size:367
Alignment explanation
Indices: 24253847--24254555 Score: 904
Period size: 367 Copynumber: 1.9 Consensus size: 367
24253837 TTAGGCATAC
* ** * * *
24253847 GGAGTTTATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGTAACAAGATTGACAGCACGC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGGCAACAAGATCGACAGCACGC
* * * *
24253912 AAGGGGGACCGGGCCAATCCTCGGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACG
66 AAGGGGGACCGGGCCAATCCTCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAACGCCCGCACG
* * *
24253977 CTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGTCGGACCGGG
131 CTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCCAGACCGAG
* * * * * *
24254042 GGTTGTGGAAGCAGGATCGGCAACGGGATCAGCAGCACGTAGAGGGGGACCTGGCTGATCCCCGA
196 GGTTGTGGAAGCAGCACCGGCAAAGGGATCAGCAGCACGAAAAGGGGGACCTGCCTGATCCCCGA
* * * * * * *
24254107 CTTGCGCATTATGCCTCTCTGACCGACCTCTCTGGTCGACTGAGTGCCCTATGCTTGTTTCGTTG
261 CTTGCGCATTATGCCTCTCCGACCGACCTATCCGGTCGACTGAGCGCCCTACGCTCGTTTCGTGG
24254172 GTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGTATAT
326 GTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGTATAT
* * * *
24254214 GGAGTTCATTCCCAGTCTAAGATC-GAACCAGATCAATGGTTGCGGCAGCAGGATCGATAGCACG
1 GGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATCAAGGGTTGCGGCAACAAGATCGACAGCACG
* **** * * *
24254278 CAGGGGGGACCGGTTTGATCCTCGGCTTGCGCATTCTACCTTTTCGGCCGGCTGAACGCCCGTAC
65 CAAGGGGGACCGGGCCAATCCTCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAACGCCCGCAC
* * * *
24254343 GCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGCCAGATCGA
130 GCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCCAGACCGA
* * *
24254408 GGGTTGTGGTAGTAGCACCGGCAAAGGGATCAGCAGCACGAAAAGGGGGACC-GACCTGATCCCT
195 GGGTTGTGGAAGCAGCACCGGCAAAGGGATCAGCAGCACGAAAAGGGGGACCTG-CCTGATCCCC
** * *
24254472 GACTTGC-CATTATGCCTCTCCGGTCGACCTATCCGGTTGGCTGAGCGCTCGC-ACGCTCGTTTC
259 GACTTGCGCATTATGCCTCTCCGACCGACCTATCCGGTCGACTGAGCGC-C-CTACGCTCGTTTC
*
24254535 GTGGGTTGGCTTAGGCATACA
322 GTGGGTTGACTTAGGCATACA
24254556 TAGTACATTT
Statistics
Matches: 288, Mismatches: 50, Indels: 8
0.83 0.14 0.02
Matches are distributed among these distances:
366 35 0.12
367 252 0.88
368 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (367 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGGCAACAAGATCGACAGCACGC
AAGGGGGACCGGGCCAATCCTCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAACGCCCGCACG
CTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCCAGACCGAG
GGTTGTGGAAGCAGCACCGGCAAAGGGATCAGCAGCACGAAAAGGGGGACCTGCCTGATCCCCGA
CTTGCGCATTATGCCTCTCCGACCGACCTATCCGGTCGACTGAGCGCCCTACGCTCGTTTCGTGG
GTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGTATAT
Found at i:24254626 original size:12 final size:12
Alignment explanation
Indices: 24254611--24254639 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
24254601 AGCAGGACCG
24254611 GCAGCGGGATCA
1 GCAGCGGGATCA
24254623 GCAGCGGGATCA
1 GCAGCGGGATCA
24254635 GCAGC
1 GCAGC
24254640 ACATAGAGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.28, G:0.41, T:0.07
Consensus pattern (12 bp):
GCAGCGGGATCA
Found at i:24254781 original size:26 final size:26
Alignment explanation
Indices: 24254745--24254797 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24254735 GTTGACTTAG
*
24254745 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCACTCCC-AGTCTAA
24254771 GCATACAGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
24254797 G
1 G
24254798 ATTGAACGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:24255078 original size:159 final size:160
Alignment explanation
Indices: 24254847--24255274 Score: 425
Period size: 159 Copynumber: 2.7 Consensus size: 160
24254837 ACGCAGGGTG
* * * * * * * *
24254847 GACCGAGTCGATCCTCGACTTACGTATTTTGCCTCTCCGACC-GACTGAGCACCCGCACGCCCGT
1 GACCGAGTCGATCCTCGGCTTGCGCATTATGCCTCTCCAACCAG-CTCAGCGCCCGCACGCTCGT
* * * * **
24254911 TTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-CCTGACTGAGGGTT
65 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTT
** * * *
24254975 GTGGCAGCAGGGCCGGCAGCACATAAAAGGC
130 GCAGCAGCAGGACCGACAGCACACAAAAGGC
* * * **** *
24255006 GACCGGGTCGATCC-CTGGCTTGCGCATTATGCCTTTTCAGTTGGCTCAGCGCCTGCACGCTCGT
1 GACCGAGTCGATCCTC-GGCTTGCGCATTATGCCTCTCCAACCAGCTCAGCGCCCGCACGCTCGT
* * * *
24255070 TTCATGGGTTGACTTATGCTTACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCAAGGGT
65 TTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAGGGT
* *** *
24255133 TGCAGCAGCAGGATCGACAGCACACAGGGGGG
129 TGCAGCAGCAGGACCGACAGCACACAAAAGGC
* * * *
24255165 GATCGAGTTGATCCTCGGCTTGCGCATTCTGCCTCTCCAACCAGCTGAGCGCCCGCACGCTCGTT
1 GACCGAGTCGATCCTCGGCTTGCGCATTATGCCTCTCCAACCAGCTCAGCGCCCGCACGCTCGTT
*
24255230 TCATGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
24255275 TACAGAGCTC
Statistics
Matches: 211, Mismatches: 51, Indels: 13
0.77 0.19 0.05
Matches are distributed among these distances:
158 7 0.03
159 198 0.94
160 6 0.03
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (160 bp):
GACCGAGTCGATCCTCGGCTTGCGCATTATGCCTCTCCAACCAGCTCAGCGCCCGCACGCTCGTT
TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTG
CAGCAGCAGGACCGACAGCACACAAAAGGC
Found at i:24256639 original size:368 final size:368
Alignment explanation
Indices: 24255945--24256941 Score: 1208
Period size: 368 Copynumber: 2.7 Consensus size: 368
24255935 GCGCCCGCAT
* * *
24255945 GCTCGTTTCATGGGTTGACTTAGGCGTA-TGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCAT
1 GCTCGTTTCATGGGTTGACTTAGGCATACT-GAGTTCATCCCCAGTCTAAGCATATGGAGTTCAT
* * * * * * * *
24256009 TCCCAGTCTAAGATTGGACCGGATTGAGGGTTAC-AGCAGCAGGATCGGCAGCACGTAGGAGGCA
65 TCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGA-CAGCAGGATCGACAGCACGCAGGGGGGA
* * ** *
24256073 CCGGGTCGATCTCCGA-CTTGCGCATTCTGCCTCTCCGGTTGGCTGAGTGCCCGCACGCTCATTT
129 CCGGGTCGATC-CCTAGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTT
* * *
24256137 CGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCA-ACTGGACCGAGGGTTAT
193 CGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTC-GGACCGAGGGTTGT
* * * * * * * *
24256201 GGCAGCAAGACTGGCAGCGAGATCGACAGCACACAGAAAAGGACCGGGTTGATCCTCGATTTGTG
257 GGTAGCAAGACTGACAGCGAGATCGACAGCACACAGAAAAGGAACGGGCTAATCCCCGACTTGCG
* * ** * **
24256266 CATTATGCCTCTC-AGCTTGGCCTCTCTGGCCGGCTAAATGCCCGTAC
322 CATTATGACTCTCGAGC-AGGCCTCTCCAGCCGCCTAAATGCCCACAC
*
24256313 GCTCGTTTCATGGGTTGACTTACGCATACTGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACTGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATT
24256378 CCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACC
66 CCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACC
* * * * ** *
24256443 GGGTCGATCCCTAGCTTGCACATTCTGCCTCTCCGGCCGACTGAGCCCCCTTACGCTCGTTTCAT
131 GGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGT
*
24256508 GGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTA
196 GGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTA
* * ***
24256573 GC-AGCACTGACAGCGGGATCGATC-GCACGCAGAGGGGGAACGGGCTAATCCCC-AGCTTGCGC
261 GCAAG-ACTGACAGCGAGATCGA-CAGCACACAGAAAAGGAACGGGCTAATCCCCGA-CTTGCGC
* * *
24256635 ATTATGACTCTCGGGCAGGCCTCTCCAGCTGCCTGAATGCCCACAC
323 ATTATGACTCTCGAGCAGGCCTCTCCAGCCGCCTAAATGCCCACAC
* * *
24256681 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATAGAGTTCATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACTGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATT
*
24256746 CCCAGTTTAAGATC-AGACCGGA-CTGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGA
66 CCCAGTCTAAGATCGA-ACCGGATC-GAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGA
* * * * * *
24256809 CCGGGCCGAT-CCTCGACTTGTGCATTCTACCTCTCTGGCTGGCTGAGCACCCGCACGCCCGTTT
129 CCGGGTCGATCCCTAG-CTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTT
* * * * *
24256873 CGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTGTAAGCCCCAGTCAGACCGATGGTTGT
193 CGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGT
24256937 GGTAG
257 GGTAG
24256942 AGGGATCGAC
Statistics
Matches: 543, Mismatches: 74, Indels: 24
0.85 0.12 0.04
Matches are distributed among these distances:
367 12 0.02
368 524 0.97
369 7 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (368 bp):
GCTCGTTTCATGGGTTGACTTAGGCATACTGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATT
CCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACC
GGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCGT
GGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTA
GCAAGACTGACAGCGAGATCGACAGCACACAGAAAAGGAACGGGCTAATCCCCGACTTGCGCATT
ATGACTCTCGAGCAGGCCTCTCCAGCCGCCTAAATGCCCACAC
Found at i:24256734 original size:26 final size:26
Alignment explanation
Indices: 24256704--24256756 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24256694 GTTGACTTAG
*
24256704 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
24256730 GCATATAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24256756 G
1 G
24256757 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24257021 original size:159 final size:158
Alignment explanation
Indices: 24256737--24257231 Score: 518
Period size: 159 Copynumber: 3.1 Consensus size: 158
24256727 TAAGCATATA
* * * * * * * *
24256737 GAGTTCATTCCCA-GTTTAAGATCAGACCGGACTGAGGGTTGCGACAGCAGGATCGACAGCACGC
1 GAGTTCATT-CCATGTCTAAGACCAGACAGAACCGAGGGTTGCGGCAGTAGGATCGACAGCACAC
* * **
24256801 AGGGGGGACCGGGCCGATCCTCGACTTGTGCATTCTACCTC-TCTGGCTGGCTGAGCACCCGCAC
65 AGGGGGGACCGGGCCGATCCTCGGCTTGTGCATTCTACCTCTTC-GGCCGGCTGAGTGCCCGCAC
* *
24256865 GCCCGTTTCGTGGGTTGGCTTAGGCATAGG
129 GCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * * * * * *
24256895 GAGCTCATTCCATGTGTAAGCCCCAGTCAG-ACCGATGGTTGTGGTAG-AGGGATCGACAGCACA
1 GAGTTCATTCCATGTCTAAG-ACCAGACAGAACCGAGGGTTGCGGCAGTA-GGATCGACAGCACA
* * * * * *
24256958 CAGAGGGGGATCGGGCCGATCC-CTGGCTTGCGCATTATGCCTCTTCGGCCGGTTCAGTGCCCGC
64 CAG-GGGGGACCGGGCCGATCCTC-GGCTTGTGCATTCTACCTCTTCGGCCGGCTGAGTGCCCGC
* * * *
24257022 ACGCTCATTTCATGGGTTGACTTATGCATACG
127 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* *
24257054 GAGTTCATTCCCA-GTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGTAGGATCGACAGCATGC
1 GAGTTCATT-CCATGTCTAAGACCAGACAGAACCGAGGGTTGCGGCAGTAGGATCGACAGCA--C
* * * * *
24257118 A-AGGGGGGACCGGGTCGATCTTCGGCTTGTGCATTCCACCTCTCCGGTCGGCTGAGTGCCCGCA
63 ACAGGGGGGACCGGGCCGATCCTCGGCTTGTGCATTCTACCTCTTCGGCCGGCTGAGTGCCCGCA
24257182 CGCTCGTTTCGTGGGTTGGCTTAGGCATACG
128 CGCTCGTTTCGTGGGTTGGCTTAGGCATACG
24257213 GAGTTCATTCCATGTCTAA
1 GAGTTCATTCCATGTCTAA
24257232 TCATACGGAG
Statistics
Matches: 272, Mismatches: 52, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
157 4 0.01
158 51 0.19
159 206 0.76
160 9 0.03
161 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGACCAGACAGAACCGAGGGTTGCGGCAGTAGGATCGACAGCACACA
GGGGGGACCGGGCCGATCCTCGGCTTGTGCATTCTACCTCTTCGGCCGGCTGAGTGCCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACG
Found at i:24257256 original size:26 final size:26
Alignment explanation
Indices: 24257207--24257257 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
24257197 TTGGCTTAGG
* *
24257207 CATACGGAGTTCATTCCATGTCTAAT
1 CATACGGAGCTCATTCCATATCTAAT
24257233 CATACGGAGCTCATTTCCA-ATCTAA
1 CATACGGAGCTCA-TTCCATATCTAA
24257258 GATTTTAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGGAGCTCATTCCATATCTAAT
Found at i:24257834 original size:183 final size:182
Alignment explanation
Indices: 24257436--24257908 Score: 520
Period size: 183 Copynumber: 2.6 Consensus size: 182
24257426 GCACATGGTG
* * *
24257436 TGCCTCTCCAGCCGACTAAGTGCCCACACCCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTC
1 TGCCTCTCCAGCCGACTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * *
24257501 ATCCCCAATCTAAACATATGGAGTTCATTCCCTGTCTAAGATCGGATCGAGCCAAGGGTTGCGGC
66 ATCCCC-ATCTAAGCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGAGCCAAGGGTGGCGGC
* ** * * * *
24257566 AGCAAGATCGACAGCACGTAGGGGGATCGGGCCTATCCTTGACTTACGTATTC
130 AGCAAGATCAACAGCACACAGGGGGACCGGGCCGATCCTTCACTTACGCATTC
* * * * * * *
24257619 TACCTCTTCGGCTGGCTGAGAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
1 TGCCTCTCCAGCCGACTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * *
24257684 ATCCCCATCTAAGCATACGGATTTCATTCCCTGTCTAAGCTCAGACCGGAG-CGAGGGTGGTGGT
66 ATCCCCATCTAAGCATACGGAGTTCATTCCCTGTCTAAGATCAGACC-GAGCCAAGGGTGGCGGC
* * * * *
24257748 AGTAGGATCAATAGCACACAGGGGGGACCGGGTCGAT-CTTCAGCTTGCGCATTC
130 AGCAAGATCAACAGCACACA-GGGGGACCGGGCCGATCCTTCA-CTTACGCATTC
* * *
24257802 TGCCTCTCCAGTCGATTGAGTGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
1 TGCCTCTCCAGCCGACTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * **
24257867 AT-TCCATGTCTAAGCATACGGAGCTCATTCCCAATCTAAGAT
66 ATCCCCA--TCTAAGCATACGGAGTTCATTCCCTGTCTAAGAT
24257909 TTTGAGCCAT
Statistics
Matches: 237, Mismatches: 48, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
182 65 0.27
183 143 0.60
184 29 0.12
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.26
Consensus pattern (182 bp):
TGCCTCTCCAGCCGACTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATCCCCATCTAAGCATACGGAGTTCATTCCCTGTCTAAGATCAGACCGAGCCAAGGGTGGCGGCA
GCAAGATCAACAGCACACAGGGGGACCGGGCCGATCCTTCACTTACGCATTC
Found at i:24257904 original size:26 final size:26
Alignment explanation
Indices: 24257854--24257906 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24257844 GTTGGCTTAG
* *
24257854 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24257880 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24257906 G
1 G
24257907 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24258651 original size:26 final size:26
Alignment explanation
Indices: 24258616--24258668 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24258606 GTTGACTTAG
24258616 GCATACGGAGTTCATGCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
* * *
24258642 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
24258668 G
1 G
24258669 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAGTCTAA
Found at i:24259147 original size:26 final size:26
Alignment explanation
Indices: 24259100--24259149 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
24259090 GGCTTAGGCA
* *
24259100 TACGGAGTTCATTCCATGTCTAAGCG
1 TACGGAGCTCATTCCATATCTAAGCG
24259126 TACGGAGCTCATTCCCA-ATCTAAG
1 TACGGAGCTCATT-CCATATCTAAG
24259150 ATTTTGAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGCTCATTCCATATCTAAGCG
Found at i:24260502 original size:355 final size:348
Alignment explanation
Indices: 24259811--24260553 Score: 829
Period size: 355 Copynumber: 2.1 Consensus size: 348
24259801 ACTTAGGCAT
*
24259811 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCAAAGATTGAA
1 ACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCAAAGATTGAA
* * ** *
24259876 TCGGATCGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGGGGGGACCGAGCCGATCCCCAGCTT
66 TCGGATCAAGGGTTACAGCAGCAGGATCGACAGCACGCAAGGGGGACCGAGCCGATCCCCAGCTT
* **
24259941 GCGCATTCTACCTCTCCGGTCGACTGAGCGCCCGCACGCTCGGTTCGTGGGTTGGCTTAGGCATA
131 GCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCTCGGTTAATGGGTTGGCTTAGGCATA
* * *
24260006 CGGAGTACATTCCACGTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAGTAGGACCGACAGCATG
196 CGGAGTACATTCCACGTCTAAGCCCCAGCCGGACCAAGGGTTGTAGCAGCAGGACCGACAGCATG
* * ** *
24260071 CAGAGGGGGATCGACTGATCCCCGGCTTGTGCATTATGCCTCTCCGATCGATCTCTTCGGTCGGT
261 CAGAGGGGGATCGACCGAACCCCGGCTTGCCCATTATGCCTCT-C--TCGA-CGC-TCGGTC-G-
* *
24260136 TGAGCGCCCGCACGCTCGTTTCGTGGGTTA
319 TCAGCGCCCGCACGCTCGTTTCGTGGGTGA
* *
24260166 ACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGTTA-TTCATTCCTAGTCTAAGATTGA
1 ACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACG-GAGTTCATTCCTAGTCAAAGATTGA
* * *
24260230 A-CTGGATCAAGGGTTACAGTAGCAGGATCGACAGCACGCAAGGGGGACCGGGCTGATCCCC-GA
65 ATC-GGATCAAGGGTTACAGCAGCAGGATCGACAGCACGCAAGGGGGACCGAGCCGATCCCCAG-
* * * * * *
24260293 CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCATGCTTGTTTAATGGGTTGGCTTAGGC
128 CTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCTCGGTTAATGGGTTGGCTTAGGC
* ** *
24260358 ATATGGAGTACATTTGACGTCTAAGCCCCAGCCGGACCGAGGGTTGTAGCAGCAGGACCGACAGC
193 ATACGGAGTACATTCCACGTCTAAGCCCCAGCCGGACCAAGGGTTGTAGCAGCAGGACCGACAGC
* **
24260423 GGGATCGACAGCACGTAGAGGGGGATCAGGCCGAACCCTTGCTTGCCCATTATGCCTCT-TC-A-
258 ---AT-----G--C--AGAGGGGGATC-GACCGAACCCCGGCTTGCCCATTATGCCTCTCTCGAC
* *
24260485 GC-CGG-C-TCAGTGCCCGCACGCTCGTTTCGTGGGTGG
310 GCTCGGTCGTCAGCGCCCGCACGCTCGTTTCGTGGGTGA
* * * *
24260521 ACTTATGCATACAAAGTTCATTCCTAGTCTAAG
1 ACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
24260554 ATCAGACCGG
Statistics
Matches: 329, Mismatches: 43, Indels: 32
0.81 0.11 0.08
Matches are distributed among these distances:
354 2 0.01
355 279 0.85
356 1 0.00
358 3 0.01
359 3 0.01
361 1 0.00
363 2 0.01
364 2 0.01
365 1 0.00
367 11 0.03
368 24 0.07
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (348 bp):
ACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCAAAGATTGAA
TCGGATCAAGGGTTACAGCAGCAGGATCGACAGCACGCAAGGGGGACCGAGCCGATCCCCAGCTT
GCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCTCGGTTAATGGGTTGGCTTAGGCATA
CGGAGTACATTCCACGTCTAAGCCCCAGCCGGACCAAGGGTTGTAGCAGCAGGACCGACAGCATG
CAGAGGGGGATCGACCGAACCCCGGCTTGCCCATTATGCCTCTCTCGACGCTCGGTCGTCAGCGC
CCGCACGCTCGTTTCGTGGGTGA
Found at i:24261814 original size:26 final size:26
Alignment explanation
Indices: 24261777--24261829 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24261767 GTTGACTTAG
24261777 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
24261803 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24261829 G
1 G
24261830 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24262097 original size:368 final size:367
Alignment explanation
Indices: 24261382--24262375 Score: 1129
Period size: 368 Copynumber: 2.7 Consensus size: 367
24261372 TGAACGCCCG
* * * *
24261382 CACGCTCGTTCCGTGGGTTGACTTAGGCATATGAAAGTTCACCCCCAGTCTAAGCGTACGGAGTT
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * * *** ** * *
24261447 CATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGACAGTTGGATCGGTAACACATAGGGGG
65 CATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGACAGCAAGATCGACAGCACGTAGGGGG
* * * * * * * *
24261512 GACCAAGACGGTCCTCGACTTGTGCATTTTGCCTCTCCGGTCGGTTGAGCGCCCGTACGCTCGTT
130 GACCGAGCCGATCCCCAACTTGCGCATTTTGCCTCTCC-GTCGGCTGAGCGCCCGCACGCTCGTT
* * *
24261577 TCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCAGACTGAGGGTTGT
194 TCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCAGACCGAGGGTTAT
* *
24261642 GGCAGCAGGACCTGTAGCGGGATCGACAGCACACAAAAAGGGACCAGGTTGATCCCTAGCTTGCA
259 GGCAGCAGGACCTGCAGCGGGATCGACAGCACACAAAAAGGGACCAGGTTGATCCCGAGCTTGCA
* ** **
24261707 CATTATGCCTCTCCGATCAGCCTCTCTGGCCAGCTGAGCGTCCA
324 CATTATACCTCTCCGATCAGCCTCTCCAGCCAGCTGAGCACCCA
24261751 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* **
24261816 ATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTACGGTAGCAAGATCGACAGCACGTAGGGGGG
66 ATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGACAGCAAGATCGACAGCACGTA-GGGGG
* * * *
24261881 GA-CGGGCCGATCCCCAACTTGCACATTTTGCCTCTCCGATCAGCTGAGCGCCCACACGCTCGTT
130 GACCGAGCCGATCCCCAACTTGCGCATTTTGCCTCTCCG-TCGGCTGAGCGCCCGCACGCTCGTT
* *
24261945 TCGTGGGTTGGTTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAG-CTGGACCGAGGGTTA
194 TCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTC-AGACCGAGGGTTA
* *** * ** ***
24262009 TGGCAGCAGGATC-GACAGCGGGATCGACAGCATGTAGAGGGGGATTGGGTTGATCCCCGA-CTT
258 TGGCAGCAGGACCTG-CAGCGGGATCGACAGCACACAAAAAGGGACCAGGTTGAT-CCCGAGCTT
* * * * * *
24262072 GCGCATTATACCTCTCCGGTCAGCCTTTCCAGTCGGCTGAGCACCCG
321 GCACATTATACCTCTCCGATCAGCCTCTCCAGCCAGCTGAGCACCCA
* ** * * * *
24262119 CATGCTCGTTTTATGGGTTGACTTAGGCATACGAAGTTGATCACCAGTCTATGCATACAGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * * *
24262184 ATTCCCAGTCTAAGATC-AGATCGGACCGAGGGTTGCGACAACAAGATCGACAGCTCGCAGGGGG
66 ATTCCCAGTCTAAGATCGA-ATCGGATCGAGGGTTGCGACAGCAAGATCGACAGCACGTAGGGGG
* * * * * * *
24262248 GATCGAGCCGA-CCCCTCACTTGCGCATTCTGCCTCTCCGGCTGGCAGAGCGCCCGCACGCCCAT
130 GACCGAGCCGATCCCC-AACTTGCGCATTTTGCCTCTCCGTC-GGCTGAGCGCCCGCACGCTCGT
* * * *
24262312 TTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTGTAAGCCCCAGTCAGATCGAGGGTT
193 TTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCCAGTCAGACCGAGGGTT
24262376 GTGGTAGTGG
Statistics
Matches: 527, Mismatches: 87, Indels: 23
0.83 0.14 0.04
Matches are distributed among these distances:
367 16 0.03
368 467 0.89
369 44 0.08
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (367 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGACAGCAAGATCGACAGCACGTAGGGGGG
ACCGAGCCGATCCCCAACTTGCGCATTTTGCCTCTCCGTCGGCTGAGCGCCCGCACGCTCGTTTC
GTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCAGACCGAGGGTTATGG
CAGCAGGACCTGCAGCGGGATCGACAGCACACAAAAAGGGACCAGGTTGATCCCGAGCTTGCACA
TTATACCTCTCCGATCAGCCTCTCCAGCCAGCTGAGCACCCA
Found at i:24262182 original size:26 final size:26
Alignment explanation
Indices: 24262145--24262195 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
24262135 GTTGACTTAG
*
24262145 GCATACGAAGTTGA-TCACCAGTCTAT
1 GCATACGAAGTTCATTC-CCAGTCTAT
24262171 GCATAC-AGAGTTCATTCCCAGTCTA
1 GCATACGA-AGTTCATTCCCAGTCTA
24262196 AGATCAGATC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 1 0.05
26 19 0.86
27 2 0.09
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAT
Found at i:24262648 original size:157 final size:155
Alignment explanation
Indices: 24262171--24262670 Score: 422
Period size: 158 Copynumber: 3.2 Consensus size: 155
24262161 ACCAGTCTAT
* * * *
24262171 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAACAAGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTT-CG-GAGCAGGATCGACA
* * * * * * * *
24262236 GCTCGCAGGGGGGATCGAGCCGACCCCTCA-CTTGCGCATTCTGCCTCTCCGGCTGGC-AGAGCG
64 ACACGCAGAGGGGACCGGGCCGA-TCC-CAGCTTGCGCATTCTGCCTCTCTGGCCGGCTA-AGCG
* *
24262299 CCCGCACGCCCATTTCGTGGGTTGGCTTAG
126 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * ** * * ** *
24262329 GCATAGGGAGCTCATT-CCATGTGTAAGCCCCAG-TCAGATCGAGGGTTGTGGTAGTGGGATCGG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTT-CGG-AGCAGGATCGA
* * * * *
24262392 C-AGATGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTAC-GCCTCT-TCGTCCGGCTCA
62 CAACACGCAGA-GGGGACCGGGCCGATCCC-AGCTTGCGCATT-CTGCCTCTCT-GGCCGGCTAA
* * * * * *
24262454 GCGCCCGCACACTCGTTTTGTGTGTTGACATAT
123 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
24262487 GCATACAGAGTTCATTCCCAATCTAAGATCAGATCGGATCAAGGGTTACAGGAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTT-C-GGAGCAGGATCGACA
* * *
24262552 ACAGGCAGAGGGGACCGGGTCGATCCCAGCTTGCGCATTCTACCTCTCTGGCCGGCTAAGCGCCC
64 ACACGCAGAGGGGACCGGGCCGATCCCAGCTTGCGCATTCTGCCTCTCTGGCCGGCTAAGCGCCC
24262617 GCACGCTCGTTTCGTGGGTTGGCTTAG
129 GCACGCTCGTTTCGTGGGTTGGCTTAG
*
24262644 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
24262671 CATACGGAGC
Statistics
Matches: 261, Mismatches: 65, Indels: 33
0.73 0.18 0.09
Matches are distributed among these distances:
156 5 0.02
157 84 0.32
158 156 0.60
159 16 0.06
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (155 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTCGGAGCAGGATCGACAAC
ACGCAGAGGGGACCGGGCCGATCCCAGCTTGCGCATTCTGCCTCTCTGGCCGGCTAAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24262694 original size:26 final size:26
Alignment explanation
Indices: 24262644--24262696 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24262634 GTTGGCTTAG
* *
24262644 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24262670 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24262696 G
1 G
24262697 ATTTTGAGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24264011 original size:329 final size:329
Alignment explanation
Indices: 24263402--24264080 Score: 741
Period size: 329 Copynumber: 2.1 Consensus size: 329
24263392 ATCCCCAGTC
* * * *
24263402 TAGGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAAGGTTACGGCAGCAAGATCG
1 TAGGCATACGAAGTTCATTCCCACTCTAAGATCAAACCGGACCAAAGGTTACGACAGCAAGATCG
* * ** * * * * *
24263467 ACAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGTGCATTCTGGCTTTCTGGTAGGTTAAGC
66 ACAGCACGCAGGCGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTAGGCTAAGA
* * * * *
24263532 GCCCACACGCTCGTTTCATTGGTTGGCTTAGGCATATGAAGTACATTTCACGTCTAAGCCCCAAC
131 GCCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCAAC
* * * * *
24263597 CAGACCGAGGGCTATGGTAGCAGGACCGGCAGCGGGATCGGCAACACGTAGAGGGGGAACGGGCT
196 CAGACCGAGGGCTATGGCAACAGCACCGGCAGCGAGATCGGCAACACGCAGAGGGGGAACGGGCT
* * * *
24263662 GATCCCCGGCTTGGGCATTATGCCTCTAC-GACTGGCTGAGCGCCTATATGCTCATTTCGTGGGT
261 GATCCCCGGCTTGGGCATTATGCCTCT-CTGACCGGCTGAGCGCCCACACGCTCATTTCGTGGGT
24263726 TGACT
325 TGACT
* *** * * * *
24263731 TAGGCATACGAAGTTCATTCCCACTCTAAGATCAAACTGGATTGAGGGTTACGATAGCAGGATTG
1 TAGGCATACGAAGTTCATTCCCACTCTAAGATCAAACCGGACCAAAGGTTACGACAGCAAGATCG
* *
24263796 ACAGCACGCAGGCGGGACCGGGCCGATCCCCAGCTTGTGCATTTTGCCTCTCCGGCT-GGCTGAG
66 ACAGCACGCAGGCGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGG-TAGGCTAAG
** * * * * * **
24263860 AGCCCGGACATTCGTTTCGTGGGTTGGCTTAGGCGTGCGGAGTACATTCCACATCTAAGCCCCGG
130 AGCCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCAA
** * * * * * * * *
24263925 CTGGACCGAGGGTTGTGGCAATAGCACCGGTAGTGATATCGGCAGCACGCAGAGGGGGACCGGGC
195 CCAGACCGAGGGCTATGGCAACAGCACCGGCAGCGAGATCGGCAACACGCAGAGGGGGAACGGGC
** * * * * *
24263990 TGATCCTTGGCTTGTGCATTATGCTTCTCTGACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGT
260 TGATCCCCGGCTTGGGCATTATGCCTCTCTGACCGGCTGAGCGCCCACACGCTCATTTCGTGGGT
*
24264055 TGGCT
325 TGACT
*
24264060 TAGGCATACGGAGTTCATTCC
1 TAGGCATACGAAGTTCATTCC
24264081 ATGTCTAAGC
Statistics
Matches: 283, Mismatches: 65, Indels: 4
0.80 0.18 0.01
Matches are distributed among these distances:
328 1 0.00
329 281 0.99
330 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (329 bp):
TAGGCATACGAAGTTCATTCCCACTCTAAGATCAAACCGGACCAAAGGTTACGACAGCAAGATCG
ACAGCACGCAGGCGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTAGGCTAAGA
GCCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCAAC
CAGACCGAGGGCTATGGCAACAGCACCGGCAGCGAGATCGGCAACACGCAGAGGGGGAACGGGCT
GATCCCCGGCTTGGGCATTATGCCTCTCTGACCGGCTGAGCGCCCACACGCTCATTTCGTGGGTT
GACT
Found at i:24265183 original size:26 final size:26
Alignment explanation
Indices: 24265152--24265204 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24265142 GTTGACTTAG
*
24265152 GCATACGGAGTTCGTCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24265178 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24265204 G
1 G
24265205 ATTGAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24265385 original size:26 final size:26
Alignment explanation
Indices: 24265349--24265401 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24265339 GTTGACTTAG
24265349 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
24265375 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24265401 G
1 G
24265402 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:24265730 original size:159 final size:157
Alignment explanation
Indices: 24265375--24265736 Score: 377
Period size: 159 Copynumber: 2.3 Consensus size: 157
24265365 CCTAGTCTAA
** * *
24265375 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGTAGGATCAACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGGACCGAGGGCCACGGCAGCAGGACCAACA
* * * * * *
24265440 GCACCCAGAAAGGACCGGGCCGATCCCTGGCTTGCGCATTCTGTCTCTCTGGTCGACTGAGCGCC
65 GCACACAGAAAGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGGCCGACTCAGCGCC
* * *
24265505 TGCACACCCGTTTCGTGGGTTGGCTTAG
130 CGCACACCCATTTCGTGGGTTGACTTAG
* * * ** * * *
24265533 GCATAGGGAGCTCATTCCATGACTAAGCCCCAG-TCGGACCGAGGGCCATGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATCGGACCGAGGGCCACGGCAGCAGGACCAAC
* ** * * *
24265597 AGCACATAGAGGGGGACTAGGTCGATCCCTGGCTTGCGCATTATGCCTCT-TCGGCCGGCTCAGC
64 AGCACACAGA-AAGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCT-GGCCGACTCAGC
* *
24265661 GCCCGCACACTCATTTCGTGGGTTGACTTAT
127 GCCCGCACACCCATTTCGTGGGTTGACTTAG
* *
24265692 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGG
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGATCGGACCGAGGG
24265737 TTGCGACAGC
Statistics
Matches: 162, Mismatches: 36, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.02
158 55 0.34
159 102 0.63
160 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGACCGAGGGCCACGGCAGCAGGACCAACAG
CACACAGAAAGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCTGGCCGACTCAGCGCCC
GCACACCCATTTCGTGGGTTGACTTAG
Found at i:24266657 original size:26 final size:26
Alignment explanation
Indices: 24266627--24266679 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24266617 GTTGACTCAG
24266627 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24266653 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24266679 G
1 G
24266680 ATCAAACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24266885 original size:368 final size:367
Alignment explanation
Indices: 24266237--24267230 Score: 1048
Period size: 368 Copynumber: 2.7 Consensus size: 367
24266227 CGTCCGCACA
* **
24266237 CTCGTTTCGTGGGTTGACTTAGGCATACGATGTTCATCCCAAGTATAAGCATATAGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGA-GTTCATCCCCAGTATAAGCATACGGAGTTCATTC
* * * * * ** * * *
24266302 CCAGTCTAAGATTAGATTGGACCAAGGGTTGCAGTAGCAGGATCGGCAGCATGCAGGGGGGACCT
65 CCAGTCTAAGATCAAACTGAACCAAAGGTTGCAACAACAGGATCGGCAGCACGCAGGGGGGACCG
** * *
24266367 AGCTGATCCCCGACTAGCACATTCTACCTCTCCGACCGGCTGAGCGCCTGCACACTCGTTTCATG
130 AGCCCATCCCCGACTAGCACATTCTACCTCTCCGACAGGCTGAGCGCCCGCACACTCGTTTCATG
* * * *
24266432 GGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAG
195 AGTTGGCTTAGGCATACAGAGCACATTCCACATCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAG
* * *
24266497 CAGGACCGGCAGCGAGATCGACATCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTA
260 CAGGACCGACAGCGAGATCGACAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCACATTA
* * *
24266562 TGCCTCTCTAACTGGCCTCTCCGACCGACTAAGCACCCACATG
325 AGCCTCTCCAACCGGCCTCTCCGACCGACTAAGCACCCACATG
* * * *
24266605 CTCGTTTCATTGGTTGACTCAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATCCCCAGTATAAGCATACGGAGTTCATTC
* * *
24266670 CCAGTCTAAGATCAAACTGAATCAAAGGTTGCAACAACAGGATCGGTAGCACGTAGGGGGGACCG
65 CCAGTCTAAGATCAAACTGAACCAAAGGTTGCAACAACAGGATCGGCAGCACGCAGGGGGGACCG
* * * ** * ** * *
24266735 GGCCCATCCCCGGCTTGTGCATTCTGCCTCTCCGGTAGGCTGAGCGCCCGCACGCTTGTTTCATG
130 AGCCCATCCCCGACTAGCACATTCTACCTCTCCGACAGGCTGAGCGCCCGCACACTCGTTTCATG
** *
24266800 AGTTGGCTTAGGCATACAGAGCACATTCCATGTCTAAGCCCCAGTCAGACCG-GGGATTGTGGCA
195 AGTTGGCTTAGGCATACAGAGCACATTCCACATCTAAGCCCCAGCCAGACCGAGGG-TTGTGGCA
**
24266864 GCAGGACCGACAGCGAGATCGACAGCATGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCACATT
259 GCAGGACCGACAGCGAGATCGACAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCACATT
* * * * ** ***
24266929 AAGCCTCTCCGACCGGCCTCTCTGATCGACTGAGTGCCTGTATG
324 AAGCCTCTCCAACCGGCCTCTCCGACCGACTAAGCACCCACATG
* * *
24266973 CTCGTTTCGTGGGTTGACTTAGGCATAAAGAGTTCATCCCCAATTTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCAT-ACGAGTTCATCCCCAGTATAAGCATACGGAGTTCATTC
* * * * * * * *** * *
24267038 CCAAT-TAAGATTAGAC-CAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGACC
65 CCAGTCTAAGATCAAACTGA-ACCAAAGGTTGCAACAACAGGATCGGCAGCACGCAGGGGGGACC
* * * * * * * * * **
24267101 -AGGCCGATCCCTGACTTA-CGCATTCTGCCTCTTCGACCGACTGAGCACCTGCA-TGTCCGTTT
129 GA-GCCCATCCCCGAC-TAGCACATTCTACCTCTCCGACAGGCTGAGCGCCCGCACACT-CGTTT
* ** * * *
24267163 CATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGA-CTAAGCCCCAGCCAGATCGAGGGTTGT
191 CATGAGTTGGCTTAGGCATACAGAGCACATTCCA-CATCTAAGCCCCAGCCAGACCGAGGGTTGT
24267227 GGCA
255 GGCA
24267231 ATGGGATCGA
Statistics
Matches: 514, Mismatches: 103, Indels: 19
0.81 0.16 0.03
Matches are distributed among these distances:
366 2 0.00
367 141 0.27
368 368 0.72
369 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (367 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATCCCCAGTATAAGCATACGGAGTTCATTCC
CAGTCTAAGATCAAACTGAACCAAAGGTTGCAACAACAGGATCGGCAGCACGCAGGGGGGACCGA
GCCCATCCCCGACTAGCACATTCTACCTCTCCGACAGGCTGAGCGCCCGCACACTCGTTTCATGA
GTTGGCTTAGGCATACAGAGCACATTCCACATCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGC
AGGACCGACAGCGAGATCGACAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGCACATTAA
GCCTCTCCAACCGGCCTCTCCGACCGACTAAGCACCCACATG
Found at i:24267934 original size:26 final size:26
Alignment explanation
Indices: 24267905--24267957 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24267895 GTTGACTTAG
24267905 GCATACGAAGTTCATTCCCAGGCTAA
1 GCATACGAAGTTCATTCCCAGGCTAA
* *
24267931 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGGCTAA
24267957 G
1 G
24267958 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGGCTAA
Found at i:24268496 original size:355 final size:355
Alignment explanation
Indices: 24267834--24268503 Score: 891
Period size: 355 Copynumber: 1.9 Consensus size: 355
24267824 CACCGGTTCG
* * * * * *
24267834 ATCCCCGGCTTGCGCATCTTGCCTTTCTGGTCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTG
1 ATCCCCGGCTTGCGCATCTTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTG
* * *
24267899 ACTTAGGCATACGAAGTTCATTCCCAGGCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
66 ACTTAGGCATAAGAAGTTCATCCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
* * * *
24267964 CCGGATCGAAGGTTGCGGTCGCAGGATCGACAGCACACAGGGGGGACCGAGCCAATCCTCGGCTT
131 CCGGATCGAAGGTTACGGTCGCAGGATCGACAGCACACAAGGGGGACCGAGCCAATCCCCGACTT
* ** *
24268029 ACGCATTCTGCCTCTCCGGCCTGCTAAGCACCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATA
196 ACGCATTCTGCCTCTCCGGACTGCTAAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
24268094 CGGAGTACATTCCATGTCTAAGCCCCAGTCGGACCGAGGGATGTGGCAGTAGGACCAACAGTGGG
261 CGGAGTACATTCCATGTCTAAGCCCCAGTCGGACCGAGGGATGTGGCAGTAGGACCAACAGTGGG
24268159 ATCGACAGCACGCAGAAGGGGACCGGGCTA
326 ATCGACAGCACGCAGAAGGGGACCGGGCTA
* *
24268189 ATCCCCGGCTTGTGCAT-TATGCCTCTCCGGCCGACTGAGCGCCCGTACGCTCATTTCATGGGTT
1 ATCCCCGGCTTGCGCATCT-TGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTT
* *
24268253 GACTTAGGCATATAG-AGTTCATCCCCAGCCTGAGCATACGGAGTTCATTCCCAGTCTAAGATTG
65 GACTTAGGCATA-AGAAGTTCATCCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * ** * * * * *
24268317 AACTGGATCGAGGGTTACGG-CAGCAGGATCGGTAGCACGCAAGGGGGATCGGGTCGATCCCCGA
129 AACCGGATCGAAGGTTACGGTC-GCAGGATCGACAGCACACAAGGGGGACCGAGCCAATCCCCGA
* * * * * *
24268381 CTTGCGCATTCTGCCTCTCC-GATTGATTGAGCTCCCGCACGCCCGTTTTATGGGTTGGCTTAGG
193 CTTACGCATTCTGCCTCTCCGGACTG-CTAAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGG
* * * * *
24268445 CATAGGGAGCT-TATTCCATGTCTAAGCCCCAGTCGTATCGAGGGTTGTGGCAGTAGGAC
257 CATACGGAG-TACATTCCATGTCTAAGCCCCAGTCGGACCGAGGGATGTGGCAGTAGGAC
24268504 TGGCAGCACA
Statistics
Matches: 269, Mismatches: 41, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
354 5 0.02
355 262 0.97
356 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (355 bp):
ATCCCCGGCTTGCGCATCTTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTG
ACTTAGGCATAAGAAGTTCATCCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
CCGGATCGAAGGTTACGGTCGCAGGATCGACAGCACACAAGGGGGACCGAGCCAATCCCCGACTT
ACGCATTCTGCCTCTCCGGACTGCTAAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATA
CGGAGTACATTCCATGTCTAAGCCCCAGTCGGACCGAGGGATGTGGCAGTAGGACCAACAGTGGG
ATCGACAGCACGCAGAAGGGGACCGGGCTA
Found at i:24268772 original size:158 final size:157
Alignment explanation
Indices: 24268286--24269262 Score: 517
Period size: 159 Copynumber: 6.2 Consensus size: 157
24268276 CCCAGCCTGA
* * **
24268286 GCATACGGAGTTCATTCCCA-GTCTAAGAT-TGAACTGGATCGAGGGTTACGGCAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATC-GGATCGAGGGTTGTGGCAGCAGGATCGG
* * * * * ** *
24268349 TAGCACGCAAGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATTGATTGAGCT
64 CAGCACGCAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCC-ATCGGCTGAGCG
* *
24268414 CCCGCACGCCCGTTTTATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** * *
24268444 GCATAGGGAGCTT-ATTCCATGTCTAAGCCCCAG-TCGTATCGAGGGTTGTGGCAGTAGGA-CTG
1 GCATACGGAG-TTCATTCCATGTCTAAG-ATCAGATCGGATCGAGGGTTGTGGCAGCAGGATC-G
* * * * *
24268506 GCAGCACACAGAGGGGGACCGAGTCGATCCCCGGCTTGCACATTATGCCTCTTCAGTCGGCTCAG
63 GCAGCACGCA-AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCA-TCGGCTGAG
* * * *
24268571 TGCCCGCACGCTCATTTCATGGGTTGTCTTAT
126 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
24268603 GCATAGGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGGC
* * * * *
24268667 AGCACGTAAGGGTGG-CCGGGTCGATCCCTGGCTTGCGTATTTTGGCTCTCCATCCGGCTGAGCG
65 AGCACGCAAGGG-GGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCAT-CGGCTGAGCG
* * *
24268731 CCCGTACGTTCGTTTCATGGGGTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * *
24268761 GCATACAGAGTTTATTCCATGTCTAAGCATACGCAGCTCATTCCCAATCTAAGATT-TTG-AGC-
1 GCATACGGAGTTCATTCCATGTCTAAG-AT---CAG---A-T-CGGATCGAGGGTTGTGGCAGCA
* * * ** ** * ** * * *
24268823 -CA-CGGTA-CA--TATACTGGG-CTCGGG-C-ATGTGCTGGCTTATGCATTCTGCTTCTCCGAC
57 GGATCGGCAGCACGCA-AGGGGGAC-CGGGTCGAT-CCCCGGCTTGCGCATTATGCCTCTCC-AT
* * *
24268880 CGGCTGAGCACCCACACGC-CTGTTTCGTGGGTTGGCTTAG
118 CGGCTGAGCGCCCGCACGCTC-GTTTCATGGGTTGGCTTAG
* * ** * ** * **
24268920 GCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-TCGGATCGAGGGTTATGGCAGTGGGACCGAT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGGC
* * * * *** * * *
24268984 AGCACGCAAAGGGGGATCGGGTCAATCCCTGACTTGCGCATTATGCCTCTTCGGCCTGCTCAGCA
65 AGCACGC-AAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTC-TCCATCGGCTGAGCG
* * ** * *
24269049 CCCGCATGCTCATTTTGTGGGTTGACTTAT
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** ** *
24269079 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTACGATAGTAGGAT-GGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGG-
* * * * * * *
24269142 CAGCACG-TAGGGGGATCGGGTC-ATTCCCCGACTTGTGCATTCTGCCTTTCCGACCGGCTGAGC
64 CAGCACGCAAGGGGGACCGGGTCGA-TCCCCGGCTTGCGCATTATGCCTCTCC-ATCGGCTGAGC
* * * *
24269205 ACCTGCACGCTCGTTTCGTGGGTTGGTTTAG
127 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
24269236 GCATACGGTGTACATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
24269263 CCCCAACCGA
Statistics
Matches: 623, Mismatches: 148, Indels: 97
0.72 0.17 0.11
Matches are distributed among these distances:
150 8 0.01
151 3 0.00
152 2 0.00
154 1 0.00
155 4 0.01
156 11 0.02
157 95 0.15
158 155 0.25
159 301 0.48
160 20 0.03
161 2 0.00
162 6 0.01
163 1 0.00
165 4 0.01
166 3 0.00
167 7 0.01
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGGCA
GCACGCAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCATCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:24269289 original size:157 final size:157
Alignment explanation
Indices: 24268861--24269297 Score: 438
Period size: 157 Copynumber: 2.8 Consensus size: 157
24268851 TGCTGGCTTA
*
24268861 TGCATTCTG-CTTCTCCGACCGGCTGAGCACCCACACGC-CTGTTTCGTGGGTTGGCTTAGGCAT
1 TGCATTCTGCCTT-TCCGACCGGCTGAGCACCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCAT
* ** ** * *
24268924 AGGGAGCTCATTCCATGTCTAAGCCCCAGTCGGA-TCGAGGGTTATGGCAGTGGGACCGATAGCA
64 ACGGAG-TCATTCCATGTCTAAGCCCCAACCGGACT-GAGGGTTATGATAGTAGGACCGACAGCA
*
24268988 CGCAAAGGGGGATCGGGTCAATCCCTGACTTG
127 CG-AAAGGGGGATCGGGTCAATCCCCGACTTG
* * * * * * * * * *
24269020 CGCATTATGCCTCTT-CGGCCTGCTCAGCACCCGCATGCTCATTTTGTGGGTTGACTTATGCATA
1 TGCATTCTGCCT-TTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
** * * **
24269084 CGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTACGATAGTAGGATGGACAGCA
65 CGGAG-TCATT-CCATGTCTAAGCCCCA-ACCGGACTGAGGGTTATGATAGTAGGACCGACAGCA
* *
24269147 CG-TAGGGGGATCGGGTCATTCCCCGACTTG
127 CGAAAGGGGGATCGGGTCAATCCCCGACTTG
* *
24269177 TGCATTCTGCCTTTCCGACCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGGTTTAGGCATAC
1 TGCATTCTGCCTTTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * *
24269242 GGTGTACATTCCATGTCTAAGCCCCAACCGAACTGAGGGTTGTGATAGCAGGACCG
66 GGAGT-CATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTATGATAGTAGGACCG
24269298 TTAGCGGGAT
Statistics
Matches: 218, Mismatches: 50, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
156 6 0.03
157 112 0.51
158 4 0.02
159 88 0.40
160 7 0.03
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (157 bp):
TGCATTCTGCCTTTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
GGAGTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTATGATAGTAGGACCGACAGCACGAA
AGGGGGATCGGGTCAATCCCCGACTTG
Found at i:24269445 original size:26 final size:25
Alignment explanation
Indices: 24269404--24269456 Score: 79
Period size: 26 Copynumber: 2.1 Consensus size: 25
24269394 TAGGTTGACT
24269404 TAGGCATAGGAGTTCATCCCCAGTC
1 TAGGCATAGGAGTTCATCCCCAGTC
* *
24269429 TAGGCATACGGAGTTCATTCCTAGTC
1 TAGGCATA-GGAGTTCATCCCCAGTC
24269455 TA
1 TA
24269457 AGATAAGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (25 bp):
TAGGCATAGGAGTTCATCCCCAGTC
Found at i:24269773 original size:159 final size:158
Alignment explanation
Indices: 24269429--24269931 Score: 474
Period size: 159 Copynumber: 3.2 Consensus size: 158
24269419 ATCCCCAGTC
* ** * * ** *
24269429 TAGGCATACGGAGTTCATTCCTAGTCTAAGATAAGAACAGA-CCAAGGGTTGCGACAATAGGATC
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCCAA-GGTTGCGGCAGCAGGACC
* * * * * * *
24269493 GATAGTACG-CAGGGTGGATCGGGTCGATCCTCGGCTTGTGGATTCTGCCTCTCCGACCGGTTGA
65 GACAGCACGAAAGGG-GGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGA
* *
24269557 GCGGCCGCACGCCCATTTCGTGGGTTGGCT
129 GCGCCCGCACGCACATTTCGTGGGTTGGCT
* * * * * * * *
24269587 TAGGCATAGGGAGCTCATT-CGATGTCTAAGCCCCAG-TCAGACCGAAGGTTGGGGCAGCGGGAC
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCAGACCCAAGGTTGCGGCAGCAGGAC
* * * * *
24269650 CGACAGCACGCAAAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTTTCCGGCCTGCTC
64 CGACAGCACG-AAAGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTG
* * * * * **
24269715 AGCACCCGTACGCTCGTTTCATGGGTTGATT
128 AGCGCCCGCACGCACATTTCGTGGGTTGGCT
* * * * * *
24269746 TATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCCAGGGTTGCTGCAGCAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCCAAGGTTGCGGCAGCAGGACCG
* * * *
24269811 ACAGCATGTAAGGGGGCATCGGGTCAATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAG
66 ACAGCACGAAAGGGGG-ATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAG
*
24269876 TGCCCGCACGCACATTTCGTGGGTTGGCT
130 CGCCCGCACGCACATTTCGTGGGTTGGCT
* *
24269905 TAGGCTTACGGAGTTCATTCCCTGTCT
1 TAGGCATACGGAGTTCATTCCCAGTCT
24269932 TAGCATACGA
Statistics
Matches: 269, Mismatches: 68, Indels: 15
0.76 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 57 0.21
159 204 0.76
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCCAAGGTTGCGGCAGCAGGACCG
ACAGCACGAAAGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGC
GCCCGCACGCACATTTCGTGGGTTGGCT
Found at i:24270649 original size:26 final size:26
Alignment explanation
Indices: 24270620--24270672 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24270610 GTTGACTTAG
24270620 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
* *
24270646 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24270672 G
1 G
24270673 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:24271019 original size:26 final size:25
Alignment explanation
Indices: 24270972--24271024 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
24270962 TAGGTTGACA
* *
24270972 TAGGCATAGGAGTTCATCCCCATTC
1 TAGGCATAGAAGTTCATCCCCAGTC
*
24270997 TAGGCATACGAAGTTCATTCCCAGTC
1 TAGGCATA-GAAGTTCATCCCCAGTC
24271023 TA
1 TA
24271025 AGATAAGACC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (25 bp):
TAGGCATAGAAGTTCATCCCCAGTC
Found at i:24272668 original size:159 final size:156
Alignment explanation
Indices: 24272404--24272870 Score: 360
Period size: 158 Copynumber: 3.0 Consensus size: 156
24272394 CGAACCTGAT
* * *
24272404 TGAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGTGCAT
1 TGAGGGTTGCGACAGCAGGATCGACAGCACGCAAGGGGGATCGGGTCGATCCCCAGCTTGCGCAT
* * * *
24272469 TCTGCCTCTTCGGCTGGCTGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGC
66 TATGCCTCTTCGGCTGGCTCAGCACCCGCAT-CCCATTTCATGGG-TGACTTAGGCATAGGGAGC
24272534 TCATTACATGTCTAAGCCCCAGCCGAAA
129 TCATTACATGTCTAAGCCCCAGCCGAAA
* *
24272562 TGAGGGTTGTGGCAGC-GGTATCGACAGCACGCAAAGGGGGA-CTGGGTCGATCCCCAGCTTGCG
1 TGAGGGTTGCGACAGCAGG-ATCGACAGCACGC-AAGGGGGATC-GGGTCGATCCCCAGCTTGCG
* * * * *
24272625 CATTATGCCTCTTCGG-TCGGCTCAGCGCCTGTACAT-TCATTTCATGGGTGACTTATGCATATG
63 CATTATGCCTCTTCGGCT-GGCTCAGCACCCG--CATCCCATTTCATGGGTGACTTAGGCATAGG
* * **** * *
24272688 GAGTTCATT-CCTAGTCTAAG-ATTGGACCGGAC
125 GAGCTCATTACAT-GTCTAAGCCCCAG-CCGAAA
* * * * * ** *
24272720 TGATGGTTGC-AGCAGCAGGATTGATAGCACGC-AGTGGGGACCAGGTCGATCCCTGGCTTGTGC
1 TGAGGGTTGCGA-CAGCAGGATCGACAGCACGCAAG-GGGGATCGGGTCGATCCCCAGCTTGCGC
* * * * * * * *
24272783 ATTCTGCCTCTTCGGCCGGTTAAGCACCCGCA-CGCTAGTTTCATGGGTTGGCTTAGGCATACGA
64 ATTATGCCTCTTCGGCTGGCTCAGCACCCGCATC-CCA-TTTCATGGG-TGACTTAGGCATAGGG
* *
24272847 AG-TACATTCCACGTCTAAGCCCCA
126 AGCT-CATTACATGTCTAAGCCCCA
24272871 ACTGAATCAA
Statistics
Matches: 240, Mismatches: 49, Indels: 39
0.73 0.15 0.12
Matches are distributed among these distances:
155 2 0.01
156 3 0.01
157 60 0.25
158 108 0.45
159 64 0.27
161 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
TGAGGGTTGCGACAGCAGGATCGACAGCACGCAAGGGGGATCGGGTCGATCCCCAGCTTGCGCAT
TATGCCTCTTCGGCTGGCTCAGCACCCGCATCCCATTTCATGGGTGACTTAGGCATAGGGAGCTC
ATTACATGTCTAAGCCCCAGCCGAAA
Done.