Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 244 of 402
Found at i:24273053 original size:26 final size:26
Alignment explanation
Indices: 24273023--24273075 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24273013 GTTGACTTAG
*
24273023 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
24273049 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24273075 G
1 G
24273076 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24273518 original size:683 final size:684
Alignment explanation
Indices: 24272318--24273549 Score: 1636
Period size: 683 Copynumber: 1.8 Consensus size: 684
24272308 ACCCATACAC
* *
24272318 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCGTCCCCAGTATAAGCATACGAAGTTCATTCC
1 TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTATAAGCATACGAAGTTCATTCC
* * ** * * * *
24272383 TAGTCTAAGATCGAACCTGATTGAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGGATCGG
66 CAGTCTAAGATCGAACCGGACCGACGGTTGCGACAGCAAGATCGACAGCACACAGGGGGGATCGG
* * * ** * *
24272448 GTCGATCCCCAGCTTGTGCATTCTGCCTCTTCGGCTGGCTGAGCACCCGCATGCCCGTTTCATGG
131 GCCGATCCCCAGCTTGTGCATTCTACCTCTTCGACCAGCTGAACACCCGCACGCCCGTTTCATGG
24272513 GTTGGCTTAGGCATAGGGAGCTCATTACATGTCTAAGCCCCAGCCGAAATGAGGGTTGTGGCAGC
196 GTTGGCTTAGGCATAGGGAGCTCATTACATGTCTAAGCCCCAGCCGAAATGAGGGTTGTGGCAGC
* * * *
24272578 GGTATCGACAGCACGCAAAGGGGGACTGGGTCGATCCCCAGCTTGCGCATTATGCCTCTTCGGTC
261 GGGACCGACAGCACGCAAAGGGGGACTGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGATC
* * * * * *
24272643 GGCTCAGCGCCTGTACATTCATTTCATGGGTGACTTATGCATATGGAGTTCATTCCTAGTCTAAG
326 GGCTCAGCCCCCGCACACTCATTTCATGGGTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * * *
24272708 ATTGGACCGGACTGATGGTTGCAGCAGCAGGATTGATAGCACGCAGTGGGGACCAGGTCGATCCC
391 ATCAGACCGGACTGAGGGTTACAGCAGCAGGATCGACAGCACACAGGGGGGACCAGGTCGATCCC
* ** * *
24272773 TGGCTTGTGCATTCTGCCTCTTCGGCCGGTTAAGCACCCGCACGCTAGTTTCATGGGTTGGCTTA
456 CGGCTTACGCATTCTGCCTCTCCGGCCGGCTAAGCACCCGCACGCTAGTTTCATGGGTTGGCTTA
24272838 GGCATACGAAGTACATTCCACGTCTAAGCCCCAACTGAATCAAGGGTTGTGGTAGCAGGACCGAT
521 GGCATACGAAGTACATTCCACGTCTAAGCCCCAACTGAATCAAGGGTTGTGGTAGCAGGACCGAT
24272903 AACAGGATCGGCGGCACGTAGAGGGGGACCAGGCTGATCCTCGGCTTGTGCATTATGCCTCTCCG
586 AACAGGATCGGCGGCACGTAGAGGGGGACCAGGCTGATCCTCGGCTTGTGCATTATGCCTCTCCG
24272968 GTCGGCCTCTCCGACTGCCTGAGCGTCCGTACGT
651 GTCGGCCTCTCCGACTGCCTGAGCGTCCGTACGT
* *
24273002 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCC
1 TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTATAAGCATACGAAGTTCATTCC
** ** *
24273067 CAGTCTAAGATC-AGACCGGACCGACGGTTTTGGTAGCAAGATCGACAGCGCACA-GGGGGATCG
66 CAGTCTAAGATCGA-ACCGGACCGACGGTTGCGACAGCAAGATCGACAGCACACAGGGGGGATCG
* * * *
24273130 GGCCGATCCCCGGCTTGTGTATTCTACCTC-TCTGACCAGCTGAACTCCCGCACGCCC-TTTACG
130 GGCCGATCCCCAGCTTGTGCATTCTACCTCTTC-GACCAGCTGAACACCCGCACGCCCGTTT-CA
* * * * *
24273193 TGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTAGCCGGACTGAGGGTTGTGGT
193 TGGGTTGGCTTAGGCATAGGGAGCTCATTACATGTCTAAGCCCCAGCCGAAATGAGGGTTGTGGC
* * * *
24273258 AGCGGGACCGACAGCACGTAGAGGGTGA-TCGGGCCGATCCTC-GACTTGCGCATTATGCCTCTT
258 AGCGGGACCGACAGCACGCAAAGGGGGACT-GGGCCGATCCCCAG-CTTGCGCATTATGCCTCTT
* * * *
24273321 CGATCGGCTCAGCCCCCGCACGCTCGTTTCGTGAGTTGACTTATGCATACGGAGTTCATTCCCAG
321 CGATCGGCTCAGCCCCCGCACACTCATTTCATG-GGTGACTTATGCATACGGAGTTCATTCCCAG
* * * * *
24273386 TCTAAGATCAGACGGGATTGAGGGTTACGGCAGTAGGATCGACAGCACACAGGGGGGA-CTGGAT
385 TCTAAGATCAGACCGGACTGAGGGTTACAGCAGCAGGATCGACAGCACACAGGGGGGACCAGG-T
* * * * *
24273450 CGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCA-GCTCA-TTTCGTGGG
449 CGATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTAAGCACCCGCACGCT-AGTTTCATGGG
* * *
24273513 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
513 TTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGC
24273550 ATACGAAGCT
Statistics
Matches: 463, Mismatches: 77, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
682 7 0.02
683 240 0.52
684 216 0.47
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (684 bp):
TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTATAAGCATACGAAGTTCATTCC
CAGTCTAAGATCGAACCGGACCGACGGTTGCGACAGCAAGATCGACAGCACACAGGGGGGATCGG
GCCGATCCCCAGCTTGTGCATTCTACCTCTTCGACCAGCTGAACACCCGCACGCCCGTTTCATGG
GTTGGCTTAGGCATAGGGAGCTCATTACATGTCTAAGCCCCAGCCGAAATGAGGGTTGTGGCAGC
GGGACCGACAGCACGCAAAGGGGGACTGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGATC
GGCTCAGCCCCCGCACACTCATTTCATGGGTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
ATCAGACCGGACTGAGGGTTACAGCAGCAGGATCGACAGCACACAGGGGGGACCAGGTCGATCCC
CGGCTTACGCATTCTGCCTCTCCGGCCGGCTAAGCACCCGCACGCTAGTTTCATGGGTTGGCTTA
GGCATACGAAGTACATTCCACGTCTAAGCCCCAACTGAATCAAGGGTTGTGGTAGCAGGACCGAT
AACAGGATCGGCGGCACGTAGAGGGGGACCAGGCTGATCCTCGGCTTGTGCATTATGCCTCTCCG
GTCGGCCTCTCCGACTGCCTGAGCGTCCGTACGT
Found at i:24273546 original size:157 final size:159
Alignment explanation
Indices: 24273049--24273548 Score: 390
Period size: 159 Copynumber: 3.2 Consensus size: 159
24273039 CCCAGTCTAA
* * * * ** * * *
24273049 GCATACGAAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGACGGTTTTGGTAGCAAGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGACCTAG-CCGGACTGAGGGTTACGGCAGCAGGACCGA
* * * ** * * * * * * * *
24273112 CAGCGCAC--AGGGGGATCGGGCCGATCCCCGGCTTGTGTATTCTACCTCTCTGACCAGCTGAAC
64 CAGCACACAGAGGGGGATCGGACCGATCCCCGACTTACGCATTATGCCTCTCCGATCGGCTCAGC
* *
24273175 TCCCGCACGC-CCTTTACGTGGGTTGGCTTAG
129 CCCCGCACGCTCATTT-CGTGGGTTGGCTTAG
* * * ** * *
24273206 GCATAGGGAGCTCATTCCATGTCTAAGCCCTAGCCGGACTGAGGGTTGTGGTAGCGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGACCTAGCCGGACTGAGGGTTACGGCAGCAGGACCGACA
** * * * * *
24273271 GCACGTAGAGGGTGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTTCGATCGGCTCAGCCC
66 GCACACAGAGGGGGATCGGACCGATCCCCGACTTACGCATTATGCCTCTCCGATCGGCTCAGCCC
* * * *
24273336 CCGCACGCTCGTTTCGTGAGTTGACTTAT
131 CCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * *
24273365 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACGGGATTGAGGGTTACGGCAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGACCTAG-CCGGACTGAGGGTTACGGCAGCAGGACCGA
* * * * *
24273428 CAGCACACAG-GGGGGA-CTGGATCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAG
64 CAGCACACAGAGGGGGATC-GGACCGATCCCCGACTTACGCATTATGCCTCTCCGATCGGCTCAG
* *
24273491 CGCCTGCA-GCTCATTTCGTGGGTTGGCTTAG
128 CCCCCGCACGCTCATTTCGTGGGTTGGCTTAG
24273522 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
24273549 CATACGAAGC
Statistics
Matches: 272, Mismatches: 62, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
156 6 0.02
157 93 0.34
158 51 0.19
159 115 0.42
160 7 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCTAGCCGGACTGAGGGTTACGGCAGCAGGACCGACA
GCACACAGAGGGGGATCGGACCGATCCCCGACTTACGCATTATGCCTCTCCGATCGGCTCAGCCC
CCGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:24274291 original size:26 final size:26
Alignment explanation
Indices: 24274255--24274306 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
24274245 TTGACTTAGT
24274255 CATACGGAGTTCATCCCTAGTCTAAG
1 CATACGGAGTTCATCCCTAGTCTAAG
*
24274281 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATCCCTAGTCTAAG
24274307 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCCCTAGTCTAAG
Found at i:24274463 original size:26 final size:26
Alignment explanation
Indices: 24274434--24274490 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
24274424 GTGGGTTGAC
*
24274434 TTAAGCATACGCAGTTCATCCCCAGT
1 TTAAGCATACGAAGTTCATCCCCAGT
*
24274460 TTAAGCATACGAAGTTCATTCCCAGT
1 TTAAGCATACGAAGTTCATCCCCAGT
*
24274486 CTAAG
1 TTAAG
24274491 ATCGGACTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
TTAAGCATACGAAGTTCATCCCCAGT
Found at i:24274490 original size:184 final size:185
Alignment explanation
Indices: 24274181--24274593 Score: 523
Period size: 184 Copynumber: 2.2 Consensus size: 185
24274171 ACCCCCCGTT
* * ** *
24274181 CGATCCCCGGCTTGCGCATCCTGCCTC-TCTGGTCGGCTGAACG-CTCGCATGCTCGTTTCGTGG
1 CGATCCCCGACTTGCGCATTCTGCCTCTTC-GGTCGGCTGAGTGCCTCGCACGCTCGTTTCGTGG
* * * *
24274244 GTTGACTTAGTCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGAT
65 GTTGACTTAGTCATACGCAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
24274309 CAGACCGAATCGAGGGTTG-TAACAGGAAGATCGATAGCACACAAGGGGGACCGGAC
130 CAGACCGAATCGAGGGTTGCT-ACAGGAAGATCGATAGCACACAAGGGGGACCGGAC
* * * *
24274365 CGATCCCCGACTTGTGCATTCTGCCTCTTCGGCCGGCTGAGTGCCT-GCACGCTTGTTTTGTGGG
1 CGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCTCGCACGCTCGTTTCGTGGG
*
24274429 TTGACTTAAG-CATACGCAGTTCATCCCCAGTTTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
66 TTGACTT-AGTCATACGCAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
* * * * * * * * * *
24274493 CGGACTGGATCGAGGGTTGCTGCAGTAGGATCGATAGCACGCAGGGGGGATCGGGC
130 CAGACCGAATCGAGGGTTGCTACAGGAAGATCGATAGCACACAAGGGGGACCGGAC
*
24274549 CGATCCCC-AGCTTGCGCATTCTGCCTCTTCGGTTGGCTGAGTGCC
1 CGATCCCCGA-CTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCC
24274594 CATGCGCCTA
Statistics
Matches: 197, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
183 1 0.01
184 189 0.96
185 7 0.04
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.25
Consensus pattern (185 bp):
CGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGCTGAGTGCCTCGCACGCTCGTTTCGTGGG
TTGACTTAGTCATACGCAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
AGACCGAATCGAGGGTTGCTACAGGAAGATCGATAGCACACAAGGGGGACCGGAC
Found at i:24275084 original size:184 final size:184
Alignment explanation
Indices: 24274755--24275123 Score: 440
Period size: 184 Copynumber: 2.0 Consensus size: 184
24274745 TTGACTTATT
* *
24274755 CATACAGAGTTTATTCCCAGTCTAAGATCGAATCGGATCGAAGGTTGCAGCAGCAGGATCGACAG
1 CATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAAGGTTACAGCAGCAGGATCGACAG
* * * *
24274820 CACGCAGGGGGGATCGAGTCGATCCCCAGCTTGCACATTCTGCCTCTCTAGCCGATTAAGCGCCC
66 CACGCAGGGGGGATCGAGCCGATCCCCAGCTTGCACATTCTACCTCTCCAGCCGACTAAGCGCCC
* * * * * *
24274885 GCATGCTCATTTCATGGGTTGACTTAGGCGTATGGAGTTCATCCCCAGTCTAAG
131 GCACGCTCATTTCATGGGTTGACTTAGACATACGGAGTACATCCCAAGTCTAAG
* *
24274939 CATACGGAGTTCATTCCCAGTCTAAGATC-AGATCGGATC-AAGGGTTAC-GATAGCAGGATCGA
1 CATACAGAGTTCATTCCCAGTCTAAGATCGA-ATCGGATCGAA-GGTTACAG-CAGCAGGATCGA
* * * * ** * * *
24275001 CAGCACGTAGGGGGGATCGGGCCGATCCCTATCTTGTGCATTCTACCTCTCCGGCC-AGCTGAGT
63 CAGCACGCAGGGGGGATCGAGCCGATCCCCAGCTTGCACATTCTACCTCTCCAGCCGA-CTAAGC
* * *
24275065 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGACATACGGAGTACATTCCAAGTCTAAG
127 GCCCGCACGCTCATTTCATGGGTTGACTTAGACATACGGAGTACATCCCAAGTCTAAG
24275123 C
1 C
24275124 CCTAGCAGGA
Statistics
Matches: 155, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
183 5 0.03
184 150 0.97
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.24
Consensus pattern (184 bp):
CATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAAGGTTACAGCAGCAGGATCGACAG
CACGCAGGGGGGATCGAGCCGATCCCCAGCTTGCACATTCTACCTCTCCAGCCGACTAAGCGCCC
GCACGCTCATTTCATGGGTTGACTTAGACATACGGAGTACATCCCAAGTCTAAG
Found at i:24275281 original size:26 final size:26
Alignment explanation
Indices: 24275245--24275297 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24275235 GTTGACTTAG
*
24275245 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24275271 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24275297 G
1 G
24275298 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24275632 original size:159 final size:157
Alignment explanation
Indices: 24275271--24275773 Score: 483
Period size: 159 Copynumber: 3.2 Consensus size: 157
24275261 CCCAGTCTAA
*
24275271 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * * *
24275335 AGCATGCAAGGGGGACCGGGTCGATCCCCGGCTTACACATTCTGCCTCTCTGATCGGCTGAGCGC
65 AGCAAGTAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTTTC-GACCGGCTGAGCGC
* * * *
24275400 CCGCACGCCCGTTTCATGAGTTGGCTTAG
129 CCGCACGCTCATTTCGTGGGTTGGCTTAG
*** * ** * * * * * * *
24275429 GCATGGGGAGCTCATTCCATGTCTAAGCCCCAGTCGA-ACCGAGGGTTGTGGCAACGGGACCGGT
1 GCATACAGAGTTCATTCCATGTCTAAG-ATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * *
24275493 AGCACGTAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATTATGCCTATTCAACCGGCTTAGCA
65 AGCAAGTA-AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCT-TTCGACCGGCTGAGCG
* * * *
24275558 CCCGCATGCTCATTTTGTGGGTTGACTTAT
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
** *
24275588 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGACCAGATTGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * * *
24275652 AACAAGTAAGGGGGGATCAGGTTGATCCCCGGCTTGCGCA-TACTGCCTCTTTGGCCTGCTGAGC
65 AGCAAGTAA-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTA-TGCCT-TTCGACCGGCTGAGC
*
24275716 GCCTGCACGCTCATTTCGTGGGTTGGCTTAG
127 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
*
24275747 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
24275774 CATACGGAGC
Statistics
Matches: 268, Mismatches: 68, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 58 0.22
159 202 0.75
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCA
GCAAGTAAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTTTCGACCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:24275797 original size:26 final size:26
Alignment explanation
Indices: 24275747--24275799 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24275737 GTTGGCTTAG
* *
24275747 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24275773 GCATACGGAGCTCATTCC-TAATCTAA
1 GCATACGGAGCTCATTCCAT-ATCTAA
24275799 G
1 G
24275800 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24276353 original size:26 final size:26
Alignment explanation
Indices: 24276303--24276355 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24276293 GTTGGCTTAG
* *
24276303 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGCTCATTCCATATCTAA
24276329 GCATATGGAGCTCATTCCCA-ATCTAA
1 GCATATGGAGCTCATT-CCATATCTAA
24276355 G
1 G
24276356 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGCTCATTCCATATCTAA
Found at i:24276715 original size:556 final size:556
Alignment explanation
Indices: 24275578--24276715 Score: 1561
Period size: 556 Copynumber: 2.0 Consensus size: 556
24275568 CATTTTGTGG
* * * ***
24275578 GTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGTGGCAGC
1 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAGC
* ** * ***
24275643 AGGATCGACAACAAGTAAGGGGGGATCAGGTTGATCCCCGGCTTGCGCATACTGCCTCTTTGGCC
66 AGGATCAACAACAAG-AAGGGGGGATCAGGTCAATCCCCGGCTTGCGCATACTACCTCTCCAGCC
* *
24275708 TGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 GGCTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
24275773 GCATACGGAGCTCATTCCTAATCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGT
195 GCATACGGAGCTCATTCCCAATCTAAGATTTTGAGCCACGGTGCACATGCTAGGCTCGAGCATGT
** * * *
24275838 GCTGGTGCCGTATTTTTTTGCCTGGGGCACTATCGCTGGAGCATCGTCGGAGAGCCTAACCGACA
260 GCTGGTGCCACATTTTTTTGCCTGGGGCACTATCGCTAGAGCATCATCAGAGAGCCTAACCGACA
* * * * **
24275903 GCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGTTCGTTTTGTGGGTTAGGTTAGGCATACG
325 GCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCATGGGTTAGGTTAGGCATACG
** *
24275968 GAGTACATTCCACGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCGGGAT
390 GAGTACATTCCACGTCTAAGCCCCAGCCAGACCGAGGGTCATGGCAGCAGGACCGACAGCGGGAT
* **
24276033 CGGCAGCACGTAGAGGGGGACCAGGCTGATCCCCGACTTATGCATTATGCCTCTCCAGTCGACCT
455 CGACAGCACACAGAGGGGGACCAGGCTGATCCCCGACTTATGCATTATGCCTCTCCAGTCGACCT
* * * *
24276098 CTTCGATCAGCTGAGCATCCGTACACTCGTTTCATGG
520 CTTCGACCAGCTGAGCACCCGCACACTCGTTTCATGA
* *
24276135 GTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAGC
1 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAGC
* * * * * *
24276200 AGGATCAACAGCACA-CAGGGGGGATCGGGTCAATCCTCGGCTTGCGCATTCTACCTCTCCAGTC
66 AGGATCAACAACA-AGAAGGGGGGATCAGGTCAATCCCCGGCTTGCGCATACTACCTCTCCAGCC
* * * *
24276264 GGTTGAGTGCCTGCATGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
130 GGCTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
24276329 GCATATGGAGCTCATTCCCAATCTAAGATTTTGAGCCACGGTGCACATGCTAGGCTCGAGCATGT
195 GCATACGGAGCTCATTCCCAATCTAAGATTTTGAGCCACGGTGCACATGCTAGGCTCGAGCATGT
*
24276394 GCTGGTGCCACATTTTTTTGCCTGGGGCACTATCG-TCAGAGCATCATCAGAGAGCCTAACCTAC
260 GCTGGTGCCACATTTTTTTGCCTGGGGCACTATCGCT-AGAGCATCATCAGAGAGCCTAACCGAC
*
24276458 -GACATTCTGCCTCTTCGGTCGGCTGAGCACCCGCACGCTCATTTCATGGGTT-GGCTTAGGCAT
324 AG-CATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCATGGGTTAGG-TTAGGCAT
* * * *
24276521 ATGGAGTACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTCATGGCAGTC-GGACCGACAGTG
387 ACGGAGTACATTCCACGTCTAAGCCCCAGCCAGACCGAGGGTCATGGCAG-CAGGACCGACAGCG
* * * *
24276585 GGATTGACAGCACACAGAGGGGGATC-GTGCTGATCCTCGACTTATGCATTATGCCTCTCTAG-C
451 GGATCGACAGCACACAGAGGGGGACCAG-GCTGATCCCCGACTTATGCATTATGCCTCTCCAGTC
* * *
24276648 TGGCCTCTTCGACCGGCTGAGCGCCCGCACACTCGTTTCATGA
515 -GACCTCTTCGACCAGCTGAGCACCCGCACACTCGTTTCATGA
*
24276691 GTTGACTTAGGCATACAAAGTTCAT
1 GTTGACTTAGGCATACAGAGTTCAT
24276716 CCACAGACTA
Statistics
Matches: 506, Mismatches: 68, Indels: 15
0.86 0.12 0.03
Matches are distributed among these distances:
555 6 0.01
556 430 0.85
557 69 0.14
558 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (556 bp):
GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAGC
AGGATCAACAACAAGAAGGGGGGATCAGGTCAATCCCCGGCTTGCGCATACTACCTCTCCAGCCG
GCTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATACGGAGCTCATTCCCAATCTAAGATTTTGAGCCACGGTGCACATGCTAGGCTCGAGCATGTG
CTGGTGCCACATTTTTTTGCCTGGGGCACTATCGCTAGAGCATCATCAGAGAGCCTAACCGACAG
CATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCATGGGTTAGGTTAGGCATACGG
AGTACATTCCACGTCTAAGCCCCAGCCAGACCGAGGGTCATGGCAGCAGGACCGACAGCGGGATC
GACAGCACACAGAGGGGGACCAGGCTGATCCCCGACTTATGCATTATGCCTCTCCAGTCGACCTC
TTCGACCAGCTGAGCACCCGCACACTCGTTTCATGA
Found at i:24277084 original size:25 final size:25
Alignment explanation
Indices: 24277055--24277102 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
24277045 GTTGACTTAG
24277055 GCATAC-GAAGTTCAT-CCACAGTCAA
1 GCATACAG-AGTTCATGCC-CAGTCAA
24277080 GCATACAGAGTTCATGCCCAGTC
1 GCATACAGAGTTCATGCCCAGTC
24277103 TAAGATTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
25 18 0.86
26 3 0.14
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (25 bp):
GCATACAGAGTTCATGCCCAGTCAA
Found at i:24277241 original size:354 final size:353
Alignment explanation
Indices: 24276477--24277705 Score: 1337
Period size: 354 Copynumber: 3.4 Consensus size: 353
24276467 CCTCTTCGGT
** * * * * *
24276477 CGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTACATTCCACGTCTA
1 CGGCTGAGTGCCCTCACG-TCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCA-TCCTCATCTA
* *
24276542 AGCCCCAG-TCGGACCGAGGGTCATGGCAGTCGGACCGACAGTGGGATTGACAGCACACAGAGGG
64 AGCCCCAGCT-GGACCGAGGGT--T----GT--G---G-CAGCGGGATCGACAGCACACAGAGGG
* * *
24276606 GGATCGTGCTGATCCTCGACTTA-TGCATTATGCCTCTCTAGCTGGCCTCTTCGACCGGCTGAGC
116 GGATCG-GCTGATCCCCGACTTACT-CATTATGCCTCTCTAGCTAGCCTCTTCGACCGACTGAGC
* *
24276670 GCCCGCACACTCGTTTCATGAGTTGACTTAGGCATACAAAGTTCATCCACAGACTAAGCATACGG
179 GCCCGCACACTCGTTTCATGAGTTGACTTAGGCATACGAAGTTCATCCACAGTCTAAGCATACGG
* * *
24276735 AGTTTATGCCCAGTCTAAGATCAGATCGGATCGAAGGTTACAGTAGTATGATCGACAGCACGTAG
244 AGTTCATGCCCAGTCTAAGATCGGATCGGATCGAAGGTTGCAGTAGTATGATCGACAGCACGTAG
24276800 GTGGGACCGAGTCGATCCTCGGCTTGCACAATCTACCTCTCCGAC
309 GTGGGACCGAGTCGATCCTCGGCTTGCACAATCTACCTCTCCGAC
* **
24276845 CGGTTGAGTGCCCTCACGTTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATCCTCATCTAAG
1 CGGCTGAGTGCCCTCACGTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATCCTCATCTAAG
* * **
24276910 CCCCAACTGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACACAGAGAAGGATCAGGCTGATCC
66 CCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACACAGAGGGGGATC-GGCTGATCC
* * *
24276975 CCGACTTACTCATTATGCCTCTCTAGCCAGCCTCTTCGACCGACTGAACGCCCGCACACTCATTT
130 CCGACTTACTCATTATGCCTCTCTAGCTAGCCTCTTCGACCGACTGAGCGCCCGCACACTCGTTT
*
24277040 CATGAGTTGACTTAGGCATACGAAGTTCATCCACAGTC-AAGCATACAGAGTTCATGCCCAGTCT
195 CATGAGTTGACTTAGGCATACGAAGTTCATCCACAGTCTAAGCATACGGAGTTCATGCCCAGTCT
* *
24277104 AAGATTGGATCGGATCGAAGGTTGCAGTAGTATGATCGACAGAACGTAGGTGGGACCGAGTCGAT
260 AAGATCGGATCGGATCGAAGGTTGCAGTAGTATGATCGACAGCACGTAGGTGGGACCGAGTCGAT
*
24277169 CCTCGGCTTGCACAATCTACCTTTCCGAC
325 CCTCGGCTTGCACAATCTACCTCTCCGAC
*
24277198 CGGCTGAGTGCCCTCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATCATCATCT-A
1 CGGCTGAGTGCCCTCACG-TCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATCCTCATCTAA
* * * * * * *
24277262 --CCGAGGGTTGTGGCAGTA-GGAT-CGGTAGCGGGATCGACAGCACACAGAGGGGGATCGGGCT
65 GCCCCA--GCTG-GACCG-AGGGTTGTGGCAGCGGGATCGACAGCACACAGAGGGGGATC-GGCT
* * * *
24277323 GATCCCTGACTTACGCATTATGCCTCTCTAGCTAGCCTCTTCGACCGACTGAGTGCCCGCACGCT
125 GATCCCCGACTTACTCATTATGCCTCTCTAGCTAGCCTCTTCGACCGACTGAGCGCCCGCACACT
* * * * * ** * *
24277388 TGTTTCGTGGGTTGACTTAGTCATACGGAGTTCATCCTTAGTCTAAGCATATGGAGTTCATTCCC
190 CGTTTCATGAGTTGACTTAGGCATACGAAGTTCATCCACAGTCTAAGCATACGGAGTTCATGCCC
* * * * ** * * * *
24277453 AATCTAAGATCGGATCAGACCGAGGGTTGTGGTAATAGGATCGACAGCACGCAGGGGGGACCGAG
255 AGTCTAAGATCGGATCGGATCGAAGGTTGCAGTAGTATGATCGACAGCACGTAGGTGGGACCGAG
* * * * * * * *
24277518 CCGATCCCCGACTTACGCATTCTGCCTCTCCGAT
320 TCGATCCTCGGCTTGCACAATCTACCTCTCCGAC
* * * * *
24277552 CGGCTGAG-CCCCTACATGTCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCAT-GTC
1 CGGCTGAGTGCCCT-CACGT-CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCA-TCC-TCATC
** ** ** * *
24277615 TAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGA-CTGGTAGCACGTAGAGGGGGACCGGATC
62 TAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATC-GACAGCACACAGAGGGGGATCGGCT-
* * *
24277679 GATCCCCGGCTTGCGCATTATGCCTCT
125 GATCCCCGACTTACTCATTATGCCTCT
24277706 TCGGCTGGCT
Statistics
Matches: 732, Mismatches: 109, Indels: 52
0.82 0.12 0.06
Matches are distributed among these distances:
351 3 0.00
353 265 0.36
354 314 0.43
355 19 0.03
356 52 0.07
358 4 0.01
360 2 0.00
364 1 0.00
366 26 0.04
367 32 0.04
368 14 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (353 bp):
CGGCTGAGTGCCCTCACGTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATCCTCATCTAAG
CCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACACAGAGGGGGATCGGCTGATCCC
CGACTTACTCATTATGCCTCTCTAGCTAGCCTCTTCGACCGACTGAGCGCCCGCACACTCGTTTC
ATGAGTTGACTTAGGCATACGAAGTTCATCCACAGTCTAAGCATACGGAGTTCATGCCCAGTCTA
AGATCGGATCGGATCGAAGGTTGCAGTAGTATGATCGACAGCACGTAGGTGGGACCGAGTCGATC
CTCGGCTTGCACAATCTACCTCTCCGAC
Found at i:24277742 original size:159 final size:158
Alignment explanation
Indices: 24277574--24277936 Score: 376
Period size: 158 Copynumber: 2.3 Consensus size: 158
24277564 TACATGTCCA
* * *
24277574 TTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCC-AGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGA-ACCGAGGGT
** * ** * **
24277638 TGTGGCAGCGGGA-CTGGTAGCACGTA-GAGGGGGACCGGATCGATCCCCGGCTTGCGCATTATG
65 TGCAGCAGCAGGATC-GACAGCACGTAGGA-GGGGACAGG-TCGATCCCCGGCTTGCAAATTATG
* * * *
24277701 CCTCTTCG-GCTGGCTCAGTGCCCGCACGCTCG
127 CCTATCCGATC-GACTCAGTGCCCGCACGCTCG
* * * * ** * *
24277733 TTTCGTGGGTTGACTTATGCATACGGAGTTCATTTCC-CGTTTAAGATCGAACCGAATCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TTCCATGTCTAAGCCCCAACCGAACCGAGGGT
* *
24277797 TGCAGCAGCAGGATCGACAGCACGTAGGAGGGGACAGGTCGATCCTCGGCTTGCAAATTCTGCCT
65 TGCAGCAGCAGGATCGACAGCACGTAGGAGGGGACAGGTCGATCCCCGGCTTGCAAATTATGCCT
* * * *
24277862 ATCCGATCGATTGAGTGCCCGCATGTTCG
130 ATCCGATCGACTCAGTGCCCGCACGCTCG
24277891 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
24277937 ATACGAAGTT
Statistics
Matches: 164, Mismatches: 34, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 78 0.48
159 74 0.45
160 8 0.05
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.25
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTT
GCAGCAGCAGGATCGACAGCACGTAGGAGGGGACAGGTCGATCCCCGGCTTGCAAATTATGCCTA
TCCGATCGACTCAGTGCCCGCACGCTCG
Found at i:24277959 original size:26 final size:26
Alignment explanation
Indices: 24277909--24277961 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24277899 GTTGGCTTAG
* *
24277909 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
24277935 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
24277961 G
1 G
24277962 ATTTTGAGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:24278991 original size:26 final size:26
Alignment explanation
Indices: 24278962--24279014 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24278952 GTTGACTTAG
*
24278962 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24278988 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24279014 G
1 G
24279015 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24279359 original size:26 final size:26
Alignment explanation
Indices: 24279330--24279382 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24279320 GTTGACTTAG
*
24279330 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
* *
24279356 GCATACGGAGCTCATTCCCATTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
24279382 G
1 G
24279383 ATCAAATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:24279751 original size:159 final size:157
Alignment explanation
Indices: 24279357--24279858 Score: 402
Period size: 159 Copynumber: 3.2 Consensus size: 157
24279347 CCAGTCTAAG
* * * * * * *
24279357 CATACGGAGCTCATTCCCATTCTAAGATCAAATCGAACCGAGGGTTGCGACAACAGGATCGACAT
1 CATACGGAGCTCATTCCTAGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAACAGGATCGACAG
* * * * * *
24279422 CACGTAGGGGGGATCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCTGGCCGGTTGAGCACCC
66 CACGTAGGGGGGATCGGGCCGATCCCCG-CTTGCGCATTATGCATCTCTGGCCGGCTCAGCACCC
* *
24279487 ACACGCCGGTTTCATGGGTTGGCTTAGC
130 ACACGCCGATTTCATGGGTTGACTTAGC
* ** * * *** *
24279515 CATAGGGAGCTCATT-CTATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCATTGGGACCGACA
1 CATACGGAGCTCATTCCTA-GTCTAAGATCAAACCGGACCGAGGGTTGTGGCAACAGGATCGACA
* * *
24279579 GCATGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCATCTTTGGCCGGCTCAGCAC
65 GCACGTAG-GGGGGATCGGGCCGATCCCC-GCTTGCGCATTATGCATCTCTGGCCGGCTCAGCAC
* * * *
24279644 CCGCACGTTC-ATTTCGTGGGTTGACTTATTC
128 CCACACG-CCGATTTCATGGGTTGACTTA-GC
*** * * *
24279675 C-TACGGAGCTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTTGTGGCAGCAGGATTGACAG
1 CATACGGAGCTCATTCCTAGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAACAGGATCGACAG
* *** * * * * * *
24279739 CACGTAAGGGGGGATTGGATTGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCACC
66 CACGT-AGGGGGGATCGGGCCGATCCCC-GCTTGCGCATTATGCATCTCTGGCCGGCTCAGCACC
* * * * *
24279804 CATACGCTCG-TTTCGTGTGTTGGCTTAGG
129 CACACGC-CGATTTCATGGGTTGACTTAGC
*
24279833 CATACGGAGTTCATTCC-ATGTCTAAG
1 CATACGGAGCTCATTCCTA-GTCTAAG
24279859 CATACGGAGC
Statistics
Matches: 267, Mismatches: 66, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
157 2 0.01
158 53 0.20
159 203 0.76
160 9 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
CATACGGAGCTCATTCCTAGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAACAGGATCGACAG
CACGTAGGGGGGATCGGGCCGATCCCCGCTTGCGCATTATGCATCTCTGGCCGGCTCAGCACCCA
CACGCCGATTTCATGGGTTGACTTAGC
Found at i:24279882 original size:26 final size:26
Alignment explanation
Indices: 24279832--24279883 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24279822 GTTGGCTTAG
* *
24279832 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24279858 GCATACGGAGCTCATTTCCA-ATCTAA
1 GCATACGGAGCTCA-TTCCATATCTAA
24279884 TATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24280951 original size:26 final size:26
Alignment explanation
Indices: 24280921--24280973 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24280911 GTTAACTTTG
*
24280921 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
24280947 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
24280973 G
1 G
24280974 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:24282162 original size:26 final size:26
Alignment explanation
Indices: 24282126--24282178 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24282116 GTTGACTTAG
*
24282126 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
24282152 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
24282178 G
1 G
24282179 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:24282514 original size:26 final size:26
Alignment explanation
Indices: 24282485--24282534 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
24282475 GACTTAGGCA
*
24282485 TACGGAGCTCATCCCCAGTCTAAGTG
1 TACGAAGCTCATCCCCAGTCTAAGTG
* * *
24282511 TACGAAGTTCATTCCTAGTCTAAG
1 TACGAAGCTCATCCCCAGTCTAAG
24282535 ATCGGACTGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGAAGCTCATCCCCAGTCTAAGTG
Found at i:24282815 original size:356 final size:352
Alignment explanation
Indices: 24282092--24283135 Score: 1094
Period size: 356 Copynumber: 2.9 Consensus size: 352
24282082 AGGTCGGCTG
* * * * * *
24282092 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCTAGTCTAAGCATA
1 AGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* ** * *
24282157 CGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCAGCAGCAGGATCGGTAACATA
66 CGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCATG
* * * * *
24282222 CAGGGGGGATCGGGTCAATCCACGACTTGCGCATTCTACCTCTCCGACCGGCTGAGTGCCCGCAC
131 CAAGGGGGATCGGGTCGATCCACGACTTGCTCATTCTGCCTCTCTGACCGGCTGAGTGCCCGCAC
*
24282287 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTACGCCCCAGTCGGATCGA
196 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTACGCCCCAGTCGGACCGA
* * *
24282352 GGGTTGTGGTAGCGGGATCGGCAGCACGCAGAGGGGGATCGGACTGATCCCCGACTTGCGCATTA
261 GGGTTGTGGTAACGGGATCGGCAGCACGCAGAGGGGGACCGGACTGATCCCCGACTTACGCATTA
* * * * *
24282417 TTCCTTTCCGATCGGGCTCTCCAGTTGACT
326 TGCCTCTCCGAGCCGACTCTCCA--T-ACT
* **
24282447 GAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAAGTGT
1 -AGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
* * * * * * *
24282512 ACGAAGTTCATTCCTAGTCTAAGATCGGACTGGATAGAGGGTTGTGGTAGTAGGATCGACAGCAC
65 ACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCAT
* * *
24282577 GCAAGGGGGATCGGGTCGATCC-CCAGCTTGCTCATTCTGCCTCTCTGACCGACTGAGCGCCCGC
130 GCAAGGGGGATCGGGTCGATCCACGA-CTTGCTCATTCTGCCTCTCTGACCGGCTGAGTGCCCGC
* * *
24282641 ACGCTGGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTTTAAC-CCCCAGTCGGAC
194 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCT-ACGCCCCAGTCGGAC
*
24282705 CGAGGGTTGTGGCAGCAGGACTGGTAACGGGATCGGTAGCACGCAGAGGGGGACCGGACTGATCC
258 CGAGGG-T-T--------G--TGGTAACGGGATCGGCAGCACGCAGAGGGGGACCGGACTGATCC
* *
24282770 TCGATTTACGCATTATGCCTCTCCG-GCCGAC-CT-C-T-CT
311 CCGACTTACGCATTATGCCTCTCCGAGCCGACTCTCCATACT
* *
24282807 -G-G-CCGTACGCTCTTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
1 AGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * * * *
24282869 TGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCATG
66 CGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCATG
* * * * *
24282934 C-AGGGCGGATCGGGCCGATCCTCGACTAG-TGCATTCTGCCTCT-TCGATCGGTTGAGTGCCCG
131 CAAGGG-GGATCGGGTCGATCCACGACTTGCT-CATTCTGCCTCTCT-GACCGGCTGAGTGCCCG
* * * * * * ** *
24282996 TACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGGT-TATTCCATGTCTAAGCCCCAACCGAA
193 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA-GTACATTCCACGTCTACGCCCCAGTCGGA
* * * * ** * * *
24283060 CC-ATGGGTTGTGGCAGCGGGACCGGCAGCATGCAGAGGGGGATTGG-GTCGATCCCCGGCTTGC
257 CCGA-GGGTTGTGGTAACGGGATCGGCAGCACGCAGAGGGGGACCGGACT-GATCCCCGACTTAC
24283123 GCATTATGCCTCT
320 GCATTATGCCTCT
24283136 TTGGCTGGCT
Statistics
Matches: 574, Mismatches: 92, Indels: 56
0.80 0.13 0.08
Matches are distributed among these distances:
343 1 0.00
344 52 0.09
346 1 0.00
354 1 0.00
355 11 0.02
356 427 0.74
357 8 0.01
358 2 0.00
360 2 0.00
362 1 0.00
365 1 0.00
366 3 0.01
367 3 0.01
368 61 0.11
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (352 bp):
AGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
CGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCATG
CAAGGGGGATCGGGTCGATCCACGACTTGCTCATTCTGCCTCTCTGACCGGCTGAGTGCCCGCAC
GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTACGCCCCAGTCGGACCGA
GGGTTGTGGTAACGGGATCGGCAGCACGCAGAGGGGGACCGGACTGATCCCCGACTTACGCATTA
TGCCTCTCCGAGCCGACTCTCCATACT
Found at i:24282867 original size:26 final size:26
Alignment explanation
Indices: 24282838--24282890 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24282828 GTTGACTTAG
24282838 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24282864 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24282890 G
1 G
24282891 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24283343 original size:158 final size:157
Alignment explanation
Indices: 24282864--24283365 Score: 528
Period size: 158 Copynumber: 3.2 Consensus size: 157
24282854 CCCAGTCTAA
*
24282864 GCATATGGAGTTCATTCC-CAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATATGGAGTTCATTCCAC-GTCTAAGATCAGACCGAA-CGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
24282928 AGCATGCAGGGCGGATCGGGCCGATCCTCGACTAGTGCATTCTGCCTCTTCGATCGGTTGAGTGC
64 AGCATGCAGGGGGGATCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCGC
* *
24282993 CCGTACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
24283022 GCATAGGGAGGTT-ATTCCATGTCTAAGCCCCA-ACCGAACCATGGGTTGTGGCAGCGGGACCGG
1 GCATATGGA-GTTCATTCCACGTCTAAG-ATCAGACCGAACGA-GGGTTGTGGCAGCAGGATCGA
* * * * * * * *
24283085 CAGCATGCAGAGGGGGATTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTTGG-CTGGCTCAA
63 CAGCATGCAG-GGGGGATCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTTCGGTC-GGTTGAG
* *
24283149 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
24283181 GCATATGTAGTTCATTCC-CAGTCTAAGATTAGACCGAACTGAGGGTTGTGGCAACAAGATCGAC
1 GCATATGGAGTTCATTCCAC-GTCTAAGATCAGACCGAAC-GAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
24283245 AGCACGTAGGGGGGACCGGGTCAATCCTCGACTTGCGCATTCTGCCTCTACGGTCGATTGAGCAC
64 AGCATGCAGGGGGGATCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCGC
*
24283310 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
24283339 GCATACGGAGTTCATTCCACGTCTAAG
1 GCATATGGAGTTCATTCCACGTCTAAG
24283366 CATACGGAGC
Statistics
Matches: 273, Mismatches: 59, Indels: 24
0.77 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 148 0.54
159 122 0.45
160 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCACGTCTAAGATCAGACCGAACGAGGGTTGTGGCAGCAGGATCGACAG
CATGCAGGGGGGATCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24283389 original size:26 final size:26
Alignment explanation
Indices: 24283339--24283390 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24283329 GTTGGCTTAG
* *
24283339 GCATACGGAGTTCATTCCACGTCTAA
1 GCATACGGAGCTCATTCCACATCTAA
24283365 GCATACGGAGCTCATTCC-CAATCTAA
1 GCATACGGAGCTCATTCCAC-ATCTAA
24283391 TATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCACATCTAA
Found at i:24284426 original size:26 final size:26
Alignment explanation
Indices: 24284390--24284442 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24284380 GTTGACTTAG
24284390 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24284416 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24284442 G
1 G
24284443 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24284794 original size:26 final size:26
Alignment explanation
Indices: 24284758--24284810 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24284748 GTTGACTTAG
*
24284758 GCATACGGAGTTCATCCCCGGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24284784 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24284810 G
1 G
24284811 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24285158 original size:158 final size:159
Alignment explanation
Indices: 24284852--24285299 Score: 403
Period size: 158 Copynumber: 2.8 Consensus size: 159
24284842 ATCGATAGCG
* * * *
24284852 GGATCGACAGCATACAGAGGGGGATCGGGTTGATCCTCGGCTTGTGCATTATGCCTCTCCGATCG
1 GGATCGACAGCATACAGAGGGGGATCGGGCTGATCCTCGGCTTGCGCATTATACCTCTCCGACCG
* * * * *
24284917 ACTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTTAG
66 ACTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAG
* * *
24284982 ATCGAATCGGAATGAGGGTTGCCGCAGCA
131 ACCCAACCGGAATGAGGGTTGCCGCAGCA
* *
24285011 GGATCGATAGCA-AGCAG-GGGGGATCGGGCTGATCC-CTGGCTTGCGCATTCTACCTCTCCGAC
1 GGATCGACAGCATA-CAGAGGGGGATCGGGCTGATCCTC-GGCTTGCGCATTATACCTCTCCGAC
** * *
24285073 CGACTAAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAGGGAGCTCATT-CCATGTCT
64 CGACTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCA-GTCT
* * ** *
24285137 AAGCCCCAGCCGG-ATCGAGGGTTGTGGCAGCG
128 AAGACCCAACCGGAAT-GAGGGTTGCCGCAGCA
* * * ** * * * * * *
24285169 GGA-CCAGCAGCATGCAGAGGGGGACCGGGCCAATCCCCAGCTTGCACATTATGCCTCTTC-AGT
1 GGATCGA-CAGCATACAGAGGGGGATCGGGCTGATCCTCGGCTTGCGCATTATACCTCTCCGA-C
* * * *
24285232 CGGCTCAATG--CCCGCAAGCTCGTTTCATGGGTTGACTT-GTGCATACGGAGTTCATTCCTAGT
64 CGACT-AA-GCACCCGCACGCTCGTTTCATGGGTTGACTTAG-GCATACGGAGCTCATTCCCAGT
24285294 CTAAGA
126 CTAAGA
24285300 TCAGATCAGA
Statistics
Matches: 232, Mismatches: 44, Indels: 26
0.77 0.15 0.09
Matches are distributed among these distances:
157 8 0.03
158 123 0.53
159 95 0.41
160 5 0.02
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GGATCGACAGCATACAGAGGGGGATCGGGCTGATCCTCGGCTTGCGCATTATACCTCTCCGACCG
ACTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAG
ACCCAACCGGAATGAGGGTTGCCGCAGCA
Found at i:24286173 original size:26 final size:26
Alignment explanation
Indices: 24286136--24286188 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24286126 GTTAACTTAG
24286136 GCATAGGAAGTTCATCCCCAGTCTAA
1 GCATAGGAAGTTCATCCCCAGTCTAA
*
24286162 GCATACGG-AGTTCATTCCCAGTCTAA
1 GCATA-GGAAGTTCATCCCCAGTCTAA
24286188 G
1 G
24286189 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAGGAAGTTCATCCCCAGTCTAA
Found at i:24286812 original size:368 final size:370
Alignment explanation
Indices: 24286096--24287171 Score: 1127
Period size: 368 Copynumber: 2.9 Consensus size: 370
24286086 TCTCTTTGGA
* * * *
24286096 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCAT--AGGAAGTTCATCCCCAGTC
1 CGGCTGAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGG-AGTTCATCCCCAGTC
* **
24286159 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGAATCGAGGGTTGCGGCAGCAGGATC
65 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGAATCGAGGGTTGCAACAGCAGGATC
* * * * *
24286223 GACAGCACGCAGGAGGGACTGGACCGATCTCGGGCTTGCGCATTCTACCTCTCCAATCGGTTGAG
130 GACAGCACGCAAGAGGGACCGAACCGATCCCGGGCTTACGCATTCTACCTCTCCAATCGGTTGAG
* *
24286288 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAG
195 CGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAG
* * * * * *
24286353 TCGGACCGAGGGTTGTGCCAGCCGAACCAGCAACAGGATCGGTAGCACGCAGAGGGAGATCGAGT
260 TCGAACCGAGGGTTGGGACAGCAGAACCAGCAACAGGATCGATAGCACGCAGAGGGAGATCGAGC
* *
24286418 TGATCCTCGGCTTACGCATCATGCCTCTCCGA-TCGGCCTTTTCGGC
325 TGATCCTCGACTTACGCATCATGCCTCTCCGACT-GGCCTTTTCGAC
* ** *
24286464 CGGTTGAACGTTCACACGCTTGTTTCATGGGTTGACTTAGGCATACAGG-GTTCATCCCCAGTCT
1 CGGCTGAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGGAGTTCATCCCCAGTCT
* * * *
24286528 AAGCATACGAAGTTCATTCCCAGTCTAAGATTAGACTAG-ATCGATGGTTGCAACAGTAGGATCG
66 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGAATCGAGGGTTGCAACAGCAGGATCG
* * * * * * *
24286592 ACAGCACGTAAGAGGGACCGAACCGATCCCTGGCTTACGCATTTTGCCTCTCCGATTGGTTGAGT
131 ACAGCACGCAAGAGGGACCGAACCGATCCCGGGCTTACGCATTCTACCTCTCCAATCGGTTGAGC
* * *
24286657 GCCCGCATGCTCGTTTCAAT-GGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAG
196 GCCCGCACGCTCATTTC-ATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAG
* * ** * * * *
24286721 -CTGAACTGAGGGTTGGGACAGCAGGACTGGCAGCGGGATCGATAGCACGCAGAGGGGGATCGGG
260 TC-GAACCGAGGGTTGGGACAGCAGAACCAGCAACAGGATCGATAGCACGCAGAGGGAGATCGAG
* * *
24286785 CTGATCCTCGACTTGCGCATTATGCCTCTCCGACTGGCCTTTTCGAT
324 CTGATCCTCGACTTACGCATCATGCCTCTCCGACTGGCCTTTTCGAC
* *
24286832 CGGCTGAGCGCCCACACGCTCGTTTCATAGGTTGACTTAGGCATAC-GGAGTTCATCCCCAGTCT
1 CGGCTGAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGGAGTTCATCCCCAGTCT
* * * * * * *
24286896 AAGTATATGGAGTTCATTCCCAGTCTAAGATCAGAC-CGAATCGAGGTTTACGATAGCAGGATCG
66 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGAATCGAGGGTTGCAACAGCAGGATCG
** * * ** * * * * * * * ** * * *
24286960 GTAGCACGCAGGGGGGACCGGGCTGATCCCCGTCTTGCACATTCTGCCTCTTCGGTCAGCTGAAC
131 ACAGCACGCAAGAGGGACCGAACCGATCCCGGGCTTACGCATTCTACCTCTCCAATCGGTTGAGC
* * * ** **
24287025 GCCGGCACGC-CTGTTTTATGGGTTGGCTTAGGCATATGGAGCT-CATTCCATGTCTAAGCCCCA
196 GCCCGCACGCTC-ATTTCATGGGTTGGCTTAGGCATACAGAG-TACATTCCACATCTAAGCCCCA
* * * * * *
24287088 GTCGGACCGAGGGATGTGG-CAGCAGGACC-GACAGCAGGATCGACAGCACGCAGAGGGGGATCG
259 GTCGAACCGAGGGTTG-GGACAGCAGAACCAG-CAACAGGATCGATAGCACGCAGAGGGAGATCG
* * * *
24287151 GGTTGATCCTTGGCTTACGCA
322 AGCTGATCCTCGACTTACGCA
24287172 CGCCCGTTTC
Statistics
Matches: 590, Mismatches: 104, Indels: 28
0.82 0.14 0.04
Matches are distributed among these distances:
367 8 0.01
368 571 0.97
369 8 0.01
370 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (370 bp):
CGGCTGAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGGAGTTCATCCCCAGTCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGAATCGAGGGTTGCAACAGCAGGATCG
ACAGCACGCAAGAGGGACCGAACCGATCCCGGGCTTACGCATTCTACCTCTCCAATCGGTTGAGC
GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGT
CGAACCGAGGGTTGGGACAGCAGAACCAGCAACAGGATCGATAGCACGCAGAGGGAGATCGAGCT
GATCCTCGACTTACGCATCATGCCTCTCCGACTGGCCTTTTCGAC
Found at i:24287550 original size:26 final size:26
Alignment explanation
Indices: 24287500--24287552 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24287490 GTTGGCTTAG
* *
24287500 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24287526 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24287552 G
1 G
24287553 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24287710 original size:17 final size:16
Alignment explanation
Indices: 24287670--24287709 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
24287660 AACTGACGGC
24287670 ATTGGGGGTTCTAGCG
1 ATTGGGGGTTCTAGCG
*
24287686 ATTGGGGGTTCTGGCG
1 ATTGGGGGTTCTAGCG
24287702 ATTGGGGG
1 ATTGGGGG
24287710 GCCGGGGGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.10, C:0.10, G:0.50, T:0.30
Consensus pattern (16 bp):
ATTGGGGGTTCTAGCG
Found at i:24288404 original size:26 final size:26
Alignment explanation
Indices: 24288368--24288418 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24288358 TTGACTTAGG
*
24288368 CATACGGAGTTCATCCCCAGTCTAAT
1 CATACAGAGTTCATCCCCAGTCTAAT
*
24288394 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
24288419 GATCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAT
Found at i:24288551 original size:183 final size:184
Alignment explanation
Indices: 24288210--24288560 Score: 458
Period size: 184 Copynumber: 1.9 Consensus size: 184
24288200 TTGACTTATA
* * * *
24288210 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGCAGAATCGATAG
1 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGAATCGACAG
* * * *
24288275 CACGTAGGAGGGACCGAGTCAATCTTCGACTTGCGCATCCTGCCTCTCTGGTCGACTGAGCGCAC
66 CACGCAGGAGGGACAGAGTCAATCCTCGACTTGCGCATCCTGCCTCTCTGGCCGACTGAGCGCAC
*
24288340 ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAT
131 ACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAT
** * *
24288394 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGATAGCA-AGATCGACA
1 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGA-ATCGACA
* * * * *
24288458 GCACGCAGGGGGGATCAG-GTCGATCC-CTGGCTTGCGCAT-TTGCCTCTCTGGCCGGCTGAGCG
65 GCACGCAGGAGGGA-CAGAGTCAATCCTC-GACTTGCGCATCCTGCCTCTCTGGCCGACTGAGCG
* * *
24288520 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
128 CACACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
24288561 ACATTCACAC
Statistics
Matches: 143, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
183 59 0.41
184 82 0.57
185 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (184 bp):
CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGAATCGACAG
CACGCAGGAGGGACAGAGTCAATCCTCGACTTGCGCATCCTGCCTCTCTGGCCGACTGAGCGCAC
ACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAT
Found at i:24288613 original size:21 final size:21
Alignment explanation
Indices: 24288583--24288629 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
24288573 AGCCCTAGCC
*
24288583 GGACCGAGGGTTGTGGCAGCA
1 GGACCAAGGGTTGTGGCAGCA
24288604 GGACCAAGGGTTGTGGCAGCA
1 GGACCAAGGGTTGTGGCAGCA
24288625 GGACC
1 GGACC
24288630 GGCAGCGGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.21, C:0.21, G:0.45, T:0.13
Consensus pattern (21 bp):
GGACCAAGGGTTGTGGCAGCA
Found at i:24288789 original size:26 final size:26
Alignment explanation
Indices: 24288753--24288805 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24288743 GTTGACTTAG
* *
24288753 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
*
24288779 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
24288805 G
1 G
24288806 ATTCGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:24289156 original size:26 final size:26
Alignment explanation
Indices: 24289122--24289172 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24289112 TGACATAGGT
24289122 ATACAGAGTTCATCCCTAGTCTAAGC
1 ATACAGAGTTCATCCCTAGTCTAAGC
* *
24289148 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATCCCTAGTCTAAG
24289173 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATCCCTAGTCTAAGC
Found at i:24295339 original size:26 final size:26
Alignment explanation
Indices: 24295309--24295361 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24295299 GTTGGCTTAG
* * *
24295309 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACAGAGCTCATTCCCAATCTAA
24295335 GCATACAGAGCTCATTCCCAATCTAA
1 GCATACAGAGCTCATTCCCAATCTAA
24295361 G
1 G
24295362 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAATCTAA
Found at i:24295902 original size:26 final size:26
Alignment explanation
Indices: 24295866--24295918 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24295856 GTTGACTTAG
24295866 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24295892 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24295918 G
1 G
24295919 ATCGGATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24296179 original size:107 final size:107
Alignment explanation
Indices: 24295976--24296183 Score: 263
Period size: 107 Copynumber: 1.9 Consensus size: 107
24295966 GGGACTGGGC
* * * * * * *
24295976 CGATCCCCGGCTTGCGCATTCTACCTCTCTAGCCGGTTGAGCGCCCGTACGCCCGTTTCGTGGGT
1 CGATCCCCGGCTTGCACATTATACCTCTCTAGCCGGCTGAGCACCCGCACGCCCATTTCATGGGT
* * *
24296041 TGGCTTAGGCATAGGGAGCTCATTCCAAGTCTAAGCCCCAGT
66 TGACTTAGGCATACGGAGCTCATCCCAAGTCTAAGCCCCAGT
* * * **
24296083 CGATCCCCGGCTTGCACATTATACCTCTCTGGTCGGCTGAGTACCCGCACGTTCATTTCATGGGT
1 CGATCCCCGGCTTGCACATTATACCTCTCTAGCCGGCTGAGCACCCGCACGCCCATTTCATGGGT
* *
24296148 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
66 TGACTTAGGCATACGGAGCTCATCCCAAGTCTAAGC
24296184 ATACGGAGTT
Statistics
Matches: 84, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
107 84 1.00
ACGTcount: A:0.17, C:0.32, G:0.25, T:0.26
Consensus pattern (107 bp):
CGATCCCCGGCTTGCACATTATACCTCTCTAGCCGGCTGAGCACCCGCACGCCCATTTCATGGGT
TGACTTAGGCATACGGAGCTCATCCCAAGTCTAAGCCCCAGT
Found at i:24296186 original size:26 final size:26
Alignment explanation
Indices: 24296156--24296208 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24296146 GTTGACTTAG
*
24296156 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
* *
24296182 GCATACGGAGTTTATTACCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
24296208 G
1 G
24296209 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:24296686 original size:159 final size:158
Alignment explanation
Indices: 24296182--24296686 Score: 504
Period size: 159 Copynumber: 3.2 Consensus size: 158
24296172 CCCAGTCTAA
* * * * * * *
24296182 GCATACG-GAGTTTATTACCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAACAGGATCGGC
1 GCATACGAGAGCTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAACAGGATCGAC
** * * * *
24296246 AGCATGCAGGGGGGATCGAGCCGG-TCCTCGGCTTACGCATTTTGCCTCTCTGGCCGGCTGAGAG
66 AGCATGCAGGGGGGATCG-GGTGGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGAG
*
24296310 CCCGCACGCCCATTTCGTGGGTTGGCTTAG
130 CCCGCACG-CTATTTCGTGGGTTGGCTTAG
** * *
24296340 GCATA-GAGAGCTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAACAGGACCG
1 GCATACGAGAGCTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAACAGGATCG
** * * * *
24296402 ACAGCATGCAGAGGCAGATCGGGTCGATCCTCGACTTGCGCATTATGCCTCTTCGGCTGGCTCAG
64 ACAGCATGCAG-GGGGGATCGGGTGGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAG
* * * *
24296467 CGCCCGCACGCTCTTTTCGTGGGTTGACTTAT
128 AGCCCGCACGCT-ATTTCGTGGGTTGGCTTAG
* * * * *
24296499 GCGTAC-AGAGTTCATTCCTAGTGTAAGATCAGACCGGACCCG-GGGTTGTGGCAGCAGGATCGA
1 GCATACGAGAGCTCATTCCCAGTCTAAGATCAGACCGGA-CCGAGGGTTGTGGCAACAGGATCGA
* * * * *
24296562 CAGCACGTAGGGGGGATCGGGTTGGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGT
65 CAGCATGCAGGGGGGATCGGG-TGGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGA
* *
24296627 GCCCACACGCGTGTTTCGTGGGTTGGCTTAG
129 GCCCGCACGC-TATTTCGTGGGTTGGCTTAG
*
24296658 GCATACGA-AGCTCATTCCCAATCTAAGAT
1 GCATACGAGAGCTCATTCCCAGTCTAAGAT
24296687 TTTGAGCCAT
Statistics
Matches: 278, Mismatches: 56, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 4 0.01
158 69 0.25
159 198 0.71
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGAGAGCTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAACAGGATCGAC
AGCATGCAGGGGGGATCGGGTGGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGAGC
CCGCACGCTATTTCGTGGGTTGGCTTAG
Found at i:24298938 original size:801 final size:800
Alignment explanation
Indices: 24297389--24298992 Score: 2581
Period size: 801 Copynumber: 2.0 Consensus size: 800
24297379 CATCCCTAGT
* *
24297389 CTAAGCATACGGAGTTCATTCCCAGTTTAAGATTGGACCGGACCAAGGGTTGCGGTAGTAAGATT
1 CTAAGCATACGGAGTTCATTCCCAGTTTAAGATCGGACCGGACCAAGGGTTGCGGTAGCAAGATT
* *
24297454 GACAGCACACAAGGGGTGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGA
66 GACAGCACACAAGGGGTGACCGGGTCAATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGA
** * *
24297519 ATGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATAT
131 ACACCCGCACGCTCGTTCCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATAC
*
24297584 GAAGCTCATTCCCAATCTAAGATTTTGAGCCACAGAGCACATGATGGGCTCGGGCATATGCTGGT
196 GAAGCTCATTCCCAATCTAAGATTTTGAGCCACAGAGCACATGATGGGCTCGGGCATATGCTAGT
* * **
24297649 GCTGCATTTTTTTTGCTCGAGGCACCATCATCGGAGCATCACCGGAGAGCCTAACCGACGGCATT
261 ACCGCATTTTTTTCACTCGAGGCACCATCATCGGAGCATCACCGGAGAGCCTAACCGACGGCATT
*
24297714 GGGGGTTCCGATGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
326 GGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
24297779 GGCCCTTATATTGGCCCCCTATCCCTGATCAAACCTCGATAACTCACACCCCCTTAAAGAGCATT
391 GACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * * * *
24297844 TGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
456 TGAGATTTTATAGCTTTACCGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
* * * *
24297909 CGGTCACAAAATCTTCTCCACTCCGAGTTTTTAGCTGAAATTTTTTGTGGATGCCAACAAAAATA
521 CGGTCACAAAATCTTCTCCACTCCGAGTTTTTAGCCGAAATTTTTTGTGCATACCAAAAAAAATA
* *
24297974 CAAGGATCACCTCTAACAAATGTGGGGACAAAACACTTTATAAAAAAAGTTAAAAAAATCGAGAA
586 AAAGGATCACCTCTAACAAATGTGGGGACAAAACACTTTATAAAAAAAGTTAAAAAAATCCAGAA
* * *
24298039 CCGTAAAAAGGTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACATG
651 CCGCAAAAAGGTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTAGCCACGAAACTTCACATG
*
24298104 AAGGCTTAGGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATAT
716 AAGGCTTAGGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATAT
24298169 GAAGATGTGCTTGAACCCAC
781 GAAGATGTGCTTGAACCCAC
* *
24298189 CTAAGCATACGGAGTTCATTCCCAGTTTAAGATCGGACTGGATCAAGGGTTGCGGTAGCAAGATT
1 CTAAGCATACGGAGTTCATTCCCAGTTTAAGATCGGACCGGACCAAGGGTTGCGGTAGCAAGATT
* * *
24298254 GACAGCACGCAGGGGGTGACCGGGTCAATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGA
66 GACAGCACACAAGGGGTGACCGGGTCAATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGA
* *
24298319 GCACCCGCACGCTCGTTCCGTGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCATA
131 ACACCCGCACGCTCGTTCCATGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCATA
* *
24298383 CGAAGCTCATTCCCAATCTAAGATTTTGAGCCACGGAGCACATGATGGGCTCGGGCATGTGCTAG
195 CGAAGCTCATTCCCAATCTAAGATTTTGAGCCACAGAGCACATGATGGGCTCGGGCATATGCTAG
* *
24298448 TACCGCATTTTTTTCACTC-AGGGCACCATCATCGGAGCATCGCGGGAGAGCCTAACC-AGCGGC
260 TACCGCATTTTTTTCACTCGA-GGCACCATCATCGGAGCATCACCGGAGAGCCTAACCGA-CGGC
24298511 ATTGGGGGTTCC-AGCGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
323 ATTGGGGGTTCCGA-CGATT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
24298575 TACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
386 TACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
24298640 GCATTTGAGATTTTATAGCTTTACCGCCAATAGCCATTAAAGTGTCTAAAAATGGGGACACTTTT
451 GCATTTGAGATTTTATAGCTTTACCGCCAATAGCCATTAAAGTGTCT-AAAATGGGGACACTTTT
* ** * *
24298705 TTTAAA-GGTCACAAAATCTTCTCCACTTTGAGTTTTTAGCCGAATTTTTTTTTGCATACCAAAA
515 TTCAAACGGTCACAAAATCTTCTCCACTCCGAGTTTTTAGCCGAAATTTTTTGTGCATACCAAAA
* * * * *
24298769 AAAATAAAAGGATCACCTCTACCAAATTTGGGGACAAAACTA-TTTCTAAAGAAATTTAAAAAAA
580 AAAATAAAAGGATCACCTCTAACAAATGTGGGGACAAAAC-ACTTTATAAAAAAAGTTAAAAAAA
** *
24298833 TCCCTAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTAGCCACGAAACT
644 TCCAGAACCGCAAAAAGGTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTAGCCACGAAACT
*
24298898 TCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
709 TCACATGAAGGCTTAGGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
*
24298963 AAAATTTGAAGATGTGCTTGAACCCAC
774 AAAATATGAAGATGTGCTTGAACCCAC
24298990 CTA
1 CTA
24298993 CCACCCGTTC
Statistics
Matches: 739, Mismatches: 58, Indels: 13
0.91 0.07 0.02
Matches are distributed among these distances:
799 4 0.01
800 308 0.42
801 405 0.55
802 22 0.03
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (800 bp):
CTAAGCATACGGAGTTCATTCCCAGTTTAAGATCGGACCGGACCAAGGGTTGCGGTAGCAAGATT
GACAGCACACAAGGGGTGACCGGGTCAATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGA
ACACCCGCACGCTCGTTCCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATAC
GAAGCTCATTCCCAATCTAAGATTTTGAGCCACAGAGCACATGATGGGCTCGGGCATATGCTAGT
ACCGCATTTTTTTCACTCGAGGCACCATCATCGGAGCATCACCGGAGAGCCTAACCGACGGCATT
GGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTATAGCTTTACCGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
CGGTCACAAAATCTTCTCCACTCCGAGTTTTTAGCCGAAATTTTTTGTGCATACCAAAAAAAATA
AAAGGATCACCTCTAACAAATGTGGGGACAAAACACTTTATAAAAAAAGTTAAAAAAATCCAGAA
CCGCAAAAAGGTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTAGCCACGAAACTTCACATG
AAGGCTTAGGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATAT
GAAGATGTGCTTGAACCCAC
Found at i:24299465 original size:26 final size:26
Alignment explanation
Indices: 24299428--24299480 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24299418 GTTGACTTAG
24299428 GCATATGGAGTTCATCCCCAATCTAA
1 GCATATGGAGTTCATCCCCAATCTAA
* *
24299454 GCATA-GGAAGTTCATTCCCAGTCTAA
1 GCATATGG-AGTTCATCCCCAATCTAA
24299480 G
1 G
24299481 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAATCTAA
Found at i:24300701 original size:26 final size:26
Alignment explanation
Indices: 24300653--24300705 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24300643 GTTGACTTAG
*
24300653 GCATACGGAGTTCATCCATAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
*
24300679 GCATATGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCA-TCCACAGTCTAA
24300705 G
1 G
24300706 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:24301562 original size:910 final size:909
Alignment explanation
Indices: 24299771--24301772 Score: 2930
Period size: 910 Copynumber: 2.2 Consensus size: 909
24299761 GTTGACTTAT
* * * * *
24299771 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGCAGCAACAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAAGATCGATA
* * * * * * *
24299836 GTACGTAGGGGGGACCGGGTCGATCCTCAGCTTGCGCATTCTACCTCTCTGACCGGTTGAGTGCC
66 GCACGCAGGGGGGACCGGGTTGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCC
* * * * *
24299901 CGCCCGCTCGGTTCGT-GTTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATGCGGAGC
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGC
** *
24299965 CCATTCCCAATCTAAGATTTTGAGCCATGGTGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGC
196 CCATTCCCAATCTAAGATTTTGAGCCACCGTGCACATGATGGGCTCGGGCATGTGCTGGTGCCGC
* * * *
24300030 ATTTTTTTTCGCCCGGGGCACCATCACCGGAGGATCGCCAAAGAGCCTAACCGACGACATTAGGG
261 ATTTTTTTTAGCCCGGGGCACCATCACCGGAGCATCACCAAAGAGCCTAACCAACGACATTAGGG
* * *
24300095 GTTCCGGCGATTGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTGGC
326 GTTCCGGCGATTGAGGGGGCCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGC
* * *
24300160 CCTTATATTGGCCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCCCCTTAATGAGCATTTG
391 CCTTATATTGGCCCCCCTATCCCTCATCAAACCATGAGAACTCACACCCCCTTAAAGAGCATTTG
*
24300225 AGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
456 AGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACG
* *
24300290 GTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACA
521 GTCACAAAATCTTCTCCACTTCGAGTTTTTAGCCGAAATTTTTTGTGCATGCCAAAAAAAATACA
** * *
24300355 AGGATCACCTCTACTGAATTTTGGGACAAAACTCTTTCTAAAAAAAGTTAAAAAAATCCCAAACC
586 AGGATCACCTCTACCAAATTTGGGGACAAAAATCTTTCTAAAAAAAGTTAAAAAAATCCCAAACC
24300420 ACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGGGTCGTCTTACCACGAAACTTCACATGAA
651 ACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGGGTCGTCTTACCACGAAACTTCACATGAA
* *
24300485 GGCTTAGGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGGCACGGCAGAAAAATGA
716 GGCTTAGGAGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATAGGCACGGCAGAAAAATGA
*
24300550 AGATGTGCTTGAACCCACCTACCAACCACTCGATCCCCGACTTGCGCATCCTGCCTCTTTGGTCA
781 AGATGTGCTTGAACCCACCTACCAACCACTCGATCCCCGACTTACGCATCCTGCCTCTTTGGTCA
* * * *
24300615 GCTGAGCCCCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCATAGTCTAA
846 GCCGAGCACCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGGTCATCCACAGTCTAA
** ** * * * *
24300679 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGTAGCAAGATCAACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAAGATCGATA
* * *
24300744 GCACGCAGGGGGGGACCGGGTTGATCCCCGGCTTGTGCATTCTGCCTCTCTGATCGGCTGAGCGC
66 GCACGCA-GGGGGGACCGGGTTGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGC
*
24300809 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGAAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAG
* *
24300874 CTCATTCCCAATCTAAGATTTTGAGCCACCGTGCACATGATGGGCTCGGGCATTTGCTGGTGCCG
195 CCCATTCCCAATCTAAGATTTTGAGCCACCGTGCACATGATGGGCTCGGGCATGTGCTGGTGCCG
* * ** ** * *
24300939 TA-TTTTTTTAGCTCGGGGCACCATCGTCGGAGCATCACCGGAGAGCCTAGCCAAC-AGTATTAG
260 CATTTTTTTTAGCCCGGGGCACCATCACCGGAGCATCACCAAAGAGCCTAACCAACGA-CATTAG
* * **
24301002 GGGTTCTGGCGATTTAGGGGGCTGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTG
324 GGGTTCCGGCGATTGAGGGGGCCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTG
*
24301067 GCTCTTATATTGG-CCCCCTATCCCTCATCAAACCATGAGAACTCACACCCCCTTAAAGAGCATT
389 GCCCTTATATTGGCCCCCCTATCCCTCATCAAACCATGAGAACTCACACCCCCTTAAAGAGCATT
*
24301131 TGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAATGGGGACACTTTTTTCAA
454 TGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAA
*
24301196 ACGGTCACAAAATCTTCTCCACTTTGAGTTTTTAGCCG-AATTGTTTTGTGCATGCCAAAAAAAA
518 ACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCCGAAATT-TTTTGTGCATGCCAAAAAAAA
* *
24301260 TACAAGGATCACCTCTACCAAATTTGGGGACAAAAATCTTTCTAAAAAAATTTAAAAAAATCCCG
582 TACAAGGATCACCTCTACCAAATTTGGGGACAAAAATCTTTCTAAAAAAAGTTAAAAAAATCCCA
** * *
24301325 AACCGTAAAAAGTTTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCAC
647 AACCACAAAAAG-TTTTGAAAATCATGAAAAATAGAAAACGGGTCGTCTTACCACGAAACTTCAC
* * *
24301390 ATGAAGGCTTAGGAGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATAGGCATGGCA-AAA
711 ATGAAGGCTTAGGAGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATAGGCACGGCAGAAA
** * *
24301454 ATATGAAGATGTGCTTGAACCCACCTACC-ACCTGTTCGATCCCCGGCTTATGCATCCTGCCT-T
776 A-ATGAAGATGTGCTTGAACCCACCTACCAACC-ACTCGATCCCCGACTTACGCATCCTGCCTCT
*
24301517 TCTGGTC-GACCGAGCACCCGCACA-CTCGTTTCGTGGGTTGACTTAGGCATACGGAGGTCATCC
839 T-TGGTCAG-CCGAGCACCCGCA-AGCTCATTTCGTGGGTTGACTTAGGCATACGGAGGTCATCC
*
24301580 CCAGTCTAA
901 ACAGTCTAA
* * *
24301589 GCATACAGAGTTTATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCATGATCGGTA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAAGATCGATA
* * * * *
24301654 GCACGCA-GGGGGACCGGGCTGATCCTCGACTTACGCATTATGCCTCTCTG-GCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGGTTGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCC
* * * *
24301717 CGGACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGC
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
24301773 CCCAGCCGGA
Statistics
Matches: 972, Mismatches: 111, Indels: 23
0.88 0.10 0.02
Matches are distributed among these distances:
907 63 0.06
908 189 0.19
909 337 0.35
910 382 0.39
911 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (909 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAAGATCGATA
GCACGCAGGGGGGACCGGGTTGATCCTCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGC
CCATTCCCAATCTAAGATTTTGAGCCACCGTGCACATGATGGGCTCGGGCATGTGCTGGTGCCGC
ATTTTTTTTAGCCCGGGGCACCATCACCGGAGCATCACCAAAGAGCCTAACCAACGACATTAGGG
GTTCCGGCGATTGAGGGGGCCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCCTATCCCTCATCAAACCATGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACG
GTCACAAAATCTTCTCCACTTCGAGTTTTTAGCCGAAATTTTTTGTGCATGCCAAAAAAAATACA
AGGATCACCTCTACCAAATTTGGGGACAAAAATCTTTCTAAAAAAAGTTAAAAAAATCCCAAACC
ACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGGGTCGTCTTACCACGAAACTTCACATGAA
GGCTTAGGAGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATAGGCACGGCAGAAAAATGA
AGATGTGCTTGAACCCACCTACCAACCACTCGATCCCCGACTTACGCATCCTGCCTCTTTGGTCA
GCCGAGCACCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGGTCATCCACAGTCTAA
Found at i:24301952 original size:26 final size:26
Alignment explanation
Indices: 24301915--24301967 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24301905 GTTGACTTAG
*
24301915 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCAATCACAGTCTAA
*
24301941 GCATAC-GAAGTTCAATCCCAGTCTAA
1 GCATACAG-AGTTCAATCACAGTCTAA
24301967 G
1 G
24301968 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCACAGTCTAA
Found at i:24302289 original size:26 final size:26
Alignment explanation
Indices: 24302260--24302312 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24302250 GTTGACTTAG
24302260 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
24302286 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24302312 G
1 G
24302313 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24303056 original size:26 final size:26
Alignment explanation
Indices: 24303020--24303070 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24303010 GTTGACTTAG
*
24303020 GCATTCGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24303046 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
24303071 TGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24303653 original size:33 final size:33
Alignment explanation
Indices: 24303606--24303678 Score: 119
Period size: 33 Copynumber: 2.2 Consensus size: 33
24303596 GGCCCCAACC
* *
24303606 GGATTGAGGGTTGTGGCAGTAGGACCAATAGCA
1 GGATCGAGGGTTGTGGCAGTAGGACCAACAGCA
*
24303639 GGATCGAGGGTTGTGGCAGTAGGACCAGCAGCA
1 GGATCGAGGGTTGTGGCAGTAGGACCAACAGCA
24303672 GGATCGA
1 GGATCGA
24303679 TAGCACGTAG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.26, C:0.15, G:0.41, T:0.18
Consensus pattern (33 bp):
GGATCGAGGGTTGTGGCAGTAGGACCAACAGCA
Found at i:24305340 original size:158 final size:155
Alignment explanation
Indices: 24304897--24305396 Score: 486
Period size: 158 Copynumber: 3.2 Consensus size: 155
24304887 CAGTCTAAGG
* * * *
24304897 ATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAAGGTTGTGACAGCAGGATCGGTAGC
1 ATATGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTG-G-CAGCAGGATCGGCAGC
* * * *
24304962 ACGCAGGGGGGACCGGGCAGATCCTCGGCTTACGCATTCTGCCTCTTCGGTCGACTAAGTGCCCG
64 ACGCAGGGGGGACCGGGCA-ATCCTCGACTTACACATTCTGCCTCTTCGGTCGGCTAAGCGCCCG
* ** *
24305027 CACGCCCGTTTTGTGGGTTGGCTTAGGA
128 CACGCTCGTTTCATGGGTTGGCTTAGGC
* * ** * * * *
24305055 ATAGGGAGCTCA-TTCCATGTCTAAGCCCTTG-CCGGACCAAGGGTTGTGGCAGCGGGACCGGCA
1 ATATGGAGTTCATTTCCA-GTCTAAGATC-GGACCGGACCGAGGG-T-TGGCAGCAGGATCGGCA
* * * * * * *
24305118 GCACGCAGAGGGGGACTGGGCCAATCCCCGATTTGCACATTATGCCTCTTTGGTCGGCTCAGCGC
62 GCACGCAG-GGGGGACCGGG-CAATCCTCGACTTACACATTCTGCCTCTTCGGTCGGCTAAGCGC
* * *
24305183 CCGTACGCTCGTTTCATGGGTTGACTTATGC
125 CCGCACGCTCGTTTCATGGGTTGGCTTAGGC
* * * * *
24305214 ATATGGAGTTCATTTCCAGCCTAAGATCGGACCGGACCGAGGGTACGGCAGTAGGATAGACAGCA
1 ATATGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGT-TGGCAGCAGGATCGGCAGCA
* * *
24305279 CGCAGTGGGGGTCCGGGTCAATCCTCGACTTACACATTCTGCCTCTCCGG-CAGGCTGAGCGCCC
65 CGCAG-GGGGGACCGGG-CAATCCTCGACTTACACATTCTGCCTCTTCGGTC-GGCTAAGCGCCC
*
24305343 GCAAGCTCGTTTCATGGGTTGGCTTAGGC
127 GCACGCTCGTTTCATGGGTTGGCTTAGGC
*
24305372 ATACGGAGTTCA-TTCCATGTCTAAG
1 ATATGGAGTTCATTTCCA-GTCTAAG
24305397 CATACGGAGC
Statistics
Matches: 271, Mismatches: 61, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
157 10 0.04
158 155 0.57
159 97 0.36
160 9 0.03
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (155 bp):
ATATGGAGTTCATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGGCAGCAGGATCGGCAGCAC
GCAGGGGGGACCGGGCAATCCTCGACTTACACATTCTGCCTCTTCGGTCGGCTAAGCGCCCGCAC
GCTCGTTTCATGGGTTGGCTTAGGC
Found at i:24306139 original size:26 final size:26
Alignment explanation
Indices: 24306103--24306155 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24306093 GTTGACTTAG
24306103 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
24306129 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24306155 G
1 G
24306156 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24307367 original size:25 final size:26
Alignment explanation
Indices: 24307332--24307383 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
24307322 GTCGACTTAG
24307332 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
24307358 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24307383 G
1 G
24307384 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24307729 original size:26 final size:26
Alignment explanation
Indices: 24307699--24307751 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24307689 GTTGACTTAC
*
24307699 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24307725 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24307751 G
1 G
24307752 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24308211 original size:158 final size:157
Alignment explanation
Indices: 24307725--24308224 Score: 428
Period size: 158 Copynumber: 3.2 Consensus size: 157
24307715 CCCAGTTTAA
* *
24307725 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
24307790 GCACGCAGGGGGGGATCGGG-CTGATCCCCAACTTGCGCATTCTGCCTCTCGGTCAG-CTGAGCG
66 GAACGCA-GGGGGGATCGGGTC-GATCCCCGACTTGCGCATTCTGCCTCTCCGCCGGTC-GAGCG
* * * *
24307853 TCTGCATGCCCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * ** * * * *
24307883 CCATAAGGAGCTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGCCAGCGGGA-C--
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * *
24307943 CAGTAACACGCAGAGCGGGAAC-GCT-GATCCCCGACTTACGCATTATGCATCTTCCGTCGGCTC
64 CAG--A-ACGCAG-GGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTC-TCCGCCGG-TC
* * * * * *
24308006 -AGCACTCGCACGCTCATTTCGTGGGTTGACTTAT
123 GAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
24308040 GCTTACGGAGTTCATTCCCAGTCAAAGATCAGATCGGATCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
24308105 GAACGTAGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACCGGTCGAGCGCC
66 GAACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCG-CCGGTCGAGCGCC
*
24308170 CGCACGCTCGTTTTATGGGTTGGCTTAG
130 CGCACGCTCGTTTCATGGGTTGGCTTAG
24308198 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
24308225 CATACGGAGC
Statistics
Matches: 258, Mismatches: 64, Indels: 40
0.71 0.18 0.11
Matches are distributed among these distances:
155 3 0.01
156 31 0.12
157 90 0.35
158 128 0.50
159 3 0.01
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGACA
GAACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGCCGGTCGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:24308238 original size:26 final size:26
Alignment explanation
Indices: 24308198--24308249 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24308188 GTTGGCTTAG
*
24308198 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
24308224 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
24308250 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:24308986 original size:58 final size:60
Alignment explanation
Indices: 24308887--24309007 Score: 203
Period size: 59 Copynumber: 2.0 Consensus size: 60
24308877 TCTGGGACTG
24308887 AGCGCCGCACGCTCGTTTCAATGGGTTTGACTTAGGCATACGAAG-GCATCCCTAGTCTA
1 AGCGCCGCACGCTCGTTTCAATGGGTTTGACTTAGGCATACGAAGTGCATCCCTAGTCTA
*
24308946 AGCGCCCGCACGCTCGTTTC-ATGGG-TTGACTTAGGCATACGAAGTTCATCCCTAGTCTA
1 AGCG-CCGCACGCTCGTTTCAATGGGTTTGACTTAGGCATACGAAGTGCATCCCTAGTCTA
24309005 AGC
1 AGC
24309008 CCTAACCAGA
Statistics
Matches: 59, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
58 19 0.32
59 25 0.42
60 15 0.25
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.26
Consensus pattern (60 bp):
AGCGCCGCACGCTCGTTTCAATGGGTTTGACTTAGGCATACGAAGTGCATCCCTAGTCTA
Found at i:24309495 original size:159 final size:159
Alignment explanation
Indices: 24309127--24309669 Score: 589
Period size: 159 Copynumber: 3.4 Consensus size: 159
24309117 TTTGGCCGAT
* *
24309127 TGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG-A
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
24309191 TCGGACTGGACCGAAGGTTGTGGCAGCAGGATCGGTAGCACGCA-AGGGGAATAGGGCCGATCCC
66 TCAGTC-GGACTGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGAGGGGAATCGGGCCGATCCC
* *
24309255 CGGCTTGTGCATTCTGCCTCTCCG-GTCGGC
130 CGGCTTGCGCATTCTGCCTCTCCGACT-GGC
* * * * *
24309285 TGAGCGCCCGCACG-TCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATT-CCATGTCTAAG
1 TGAGCGCCCGCACGCT-CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
** * * * * *
24309348 CCCCAGTCGAACTGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGAGGG-ACCGGGCCGATC
64 CATCAGTCGGACTGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGAG-GGGAATCGGGCCGATC
* * *
24309412 CCCGGCTTGCGCATTATGCATCTTCGACTGGC
128 CCCGGCTTGCGCATTCTGCCTCTCCGACTGGC
* * * * *
24309444 TCAGCACCCGAACGCTCGTTTCATAGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG-A
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * * * *
24309508 TTGAATCGGACTGAGGGTTGTGGCAGCAAGATCGATAGCACACAGGGGGGGAATCAGGTCGATCT
66 -TCAGTCGGACTGAGGGTTGTGGCAGCAGGATCGATAGCACGCA-GAGGGGAATCGGGCCGATCC
* *
24309573 CCGGCTTGCGCATTCTGCCTCTCCGACCGAC
129 CCGGCTTGCGCATTCTGCCTCTCCGACTGGC
*
24309604 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGC
24309668 AT
65 AT
24309670 ACGGAGCTCA
Statistics
Matches: 312, Mismatches: 60, Indels: 24
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.01
158 81 0.26
159 127 0.41
160 99 0.32
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
TCAGTCGGACTGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGAGGGGAATCGGGCCGATCCCC
GGCTTGCGCATTCTGCCTCTCCGACTGGC
Found at i:24309670 original size:26 final size:26
Alignment explanation
Indices: 24309640--24309692 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24309630 GTTGGCTTAG
*
24309640 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
24309666 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
24309692 G
1 G
24309693 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:24313328 original size:25 final size:26
Alignment explanation
Indices: 24313293--24313344 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
24313283 GTTGACTTAG
*
24313293 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24313318 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24313344 G
1 G
24313345 ATCAAACCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:24313695 original size:26 final size:26
Alignment explanation
Indices: 24313658--24313710 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24313648 ATTGACTTAG
* *
24313658 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
24313684 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
24313710 G
1 G
24313711 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:24314173 original size:158 final size:156
Alignment explanation
Indices: 24313684--24314184 Score: 474
Period size: 159 Copynumber: 3.2 Consensus size: 156
24313674 CCCAGTCTAA
* * * * *
24313684 GCATACGAAGTTCATTCCCAATCTAAGATC-GAACCAGACCGAGGGTTGCGATAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTTGTGGTAG-AGGATCGAC
* * ** * * **
24313748 AACACGTA-GGGGGACTTGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAATGC
64 AGCACGTAGGGGGGAC-GGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
24313812 CCGCACGACT-GTTTCGTGGGTTGGCTTAG
128 CCGCACG-CTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
24313841 GCATAGGGAGCTT-ATT-CCATGTTTAAGCCCTAG-CCGGACTAAGGGTTGTGGTAGCGAGACCG
1 GCATACGGAG-TTCATTCCCA-GTCTAAGATC-AGACCAGACCAAGGGTTGTGGTAGAG-GATCG
* * * * * * * *
24313903 ACAGCATGCAGAAGGGGACCGGGTTGATCCCCGGCTTGCGCATTGTGCCTCTTCGACCGGCTCAG
62 ACAGCACGTAG-GGGGGA-CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
* * *
24313968 CGCCCGCACGCTCGTTTCATGGGTTGACTTAT
125 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
24314000 GCATACGAAGGTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGTGGTAGAAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGTAG-AGGATCGACA
* *
24314065 GCACGTAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGCC
65 GCACGTAGGGGGGA-CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* *
24314130 CGCATGCTCGTTTCGTGGGTTGGTTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* **
24314158 GCATATGGAGTTCATTCCGTGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
24314185 CATACGGAGC
Statistics
Matches: 267, Mismatches: 64, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
156 4 0.01
157 44 0.16
158 100 0.37
159 114 0.43
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGTAGAGGATCGACAG
CACGTAGGGGGGACGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24314187 original size:26 final size:26
Alignment explanation
Indices: 24314158--24314210 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24314148 GTTGGTTTAG
* * **
24314158 GCATATGGAGTTCATTCCGTGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
24314184 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
24314210 G
1 G
24314211 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:24314911 original size:26 final size:26
Alignment explanation
Indices: 24314881--24314933 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24314871 GTTGAGTTAG
*
24314881 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
24314907 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
24314933 G
1 G
24314934 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:24315275 original size:26 final size:26
Alignment explanation
Indices: 24315245--24315298 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
24315235 TGGGTTGACT
24315245 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
* *
24315271 TAGGCATACGGAGTTCATTCCTAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
24315297 TA
1 TA
24315299 AGATCGGATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:24315762 original size:26 final size:26
Alignment explanation
Indices: 24315722--24315774 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24315712 GTTGGCTTAG
*
24315722 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
24315748 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
24315774 G
1 G
24315775 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:24316462 original size:26 final size:26
Alignment explanation
Indices: 24316426--24316478 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24316416 GTTGACTTAG
24316426 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
*
24316452 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24316478 G
1 G
24316479 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:24316841 original size:26 final size:26
Alignment explanation
Indices: 24316795--24316847 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24316785 GTTGACTTAG
*
24316795 GCATACAGAGTTCATCCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
**
24316821 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24316847 G
1 G
24316848 ATCAAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24317092 original size:159 final size:157
Alignment explanation
Indices: 24316891--24317364 Score: 465
Period size: 158 Copynumber: 3.0 Consensus size: 157
24316881 TGGCAGTACG
* * * *
24316891 CAGA-GGGGATCGGGCTGATCCTCGGCTCACGCATTCTGCCTCTCTGACCAGCTGAGCACCCGCA
1 CAGAGGGGGACCGGGCTGATCCTCGGCTTACGCATTCTGCCTCTCTGATCGGCTGAGCACCCGCA
* * * *
24316955 CGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGCTCATTCCATGTTTAAGCCCCAGTCGGACCG
66 CGCTCATTTCGTGGGTTGGCTTAGGCATACGAAG-TCATTCCATGTCTAAGCCCCAGTCGGACCG
* * *
24317020 AGGGTTATGGCAGCGGGACCGACAGCACA
130 AAGGTT-TGGCAGCAGGATCGACAGCACA
* * * *
24317049 CAGAGGGGGACCGGGCTGATCCTTGGCTTACGCATTATGCCTCT-TCGATCGGCTAAGCACCTGC
1 CAGAGGGGGACCGGGCTGATCCTCGGCTTACGCATTCTGCCTCTCT-GATCGGCTGAGCACCCGC
* * * * * ** * ** *
24317113 ACGCTCATTTTGTAGGTTGACTTATGCATAC-AGAGTTCATTCCCA-GTCTAGGATCGAACCAGA
65 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGA-AG-TCATT-CCATGTCTAAGCCCCAGTCGGA
* * * **
24317176 CTGAAGGTTTCGTCAGCAGGATCAACAGCATG
127 CCGAAGGTTT-GGCAGCAGGATCGACAGCACA
* * * * * *
24317208 TAG-GGGGGACCGGG-TCGATCCTCGACTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCAC
1 CAGAGGGGGACCGGGCT-GATCCTCGGCTTACGCATTCTGCCTCTCTGATCGGCTGAGCACCCGC
*
24317271 ACGCTCATTTCGTGGGTTAGCTTAGGCATACGAAGTACATTCCATGTCTAAGCCCCAGTCGGACC
65 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGT-CATTCCATGTCTAAGCCCCAGTCGGACC
*
24317336 GAAGGTTGTGGCAGCAGGATCGGCAGCAC
129 GAAGGTT-TGGCAGCAGGATCGACAGCAC
24317365 GTAGAGGAGG
Statistics
Matches: 246, Mismatches: 59, Indels: 22
0.75 0.18 0.07
Matches are distributed among these distances:
157 5 0.02
158 121 0.49
159 117 0.48
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (157 bp):
CAGAGGGGGACCGGGCTGATCCTCGGCTTACGCATTCTGCCTCTCTGATCGGCTGAGCACCCGCA
CGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTCATTCCATGTCTAAGCCCCAGTCGGACCGA
AGGTTTGGCAGCAGGATCGACAGCACA
Found at i:24317341 original size:158 final size:157
Alignment explanation
Indices: 24316891--24317410 Score: 442
Period size: 159 Copynumber: 3.3 Consensus size: 157
24316881 TGGCAGTACG
* * * * *
24316891 CAGA-GGGGATCGGGCTGATCCTCGGCTCACGCATTCTGCCTCTCTGACCAGCTGAGCACCCGCA
1 CAGAGGGGGACCGGGCTGATCCTCGACTTACGCATTCTGCCTCTCTGATCGGCTGAGCACCCGCA
* * * *
24316955 CGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGCTCATTCCATGTTTAAGCCCCAGTCGGACCG
66 CGCTCATTTCGTGGGTT-GCTTAGGCATACGAAG-TCATTCCATGTCTAAGCCCCAGTCGGACCG
* * * *
24317020 AGGGTTATGGCAGCGGGACCGACAGCACA
129 AAGGTTATGGCAGCAGGATCAACAGCACA
* * * * *
24317049 CAGAGGGGGACCGGGCTGATCCTTGGCTTACGCATTATGCCTCT-TCGATCGGCTAAGCACCTGC
1 CAGAGGGGGACCGGGCTGATCCTCGACTTACGCATTCTGCCTCTCT-GATCGGCTGAGCACCCGC
* * * * ** * ** *
24317113 ACGCTCATTTTGTAGGTTGACTTATGCATAC-AGAGTTCATTCCCA-GTCTAGGATCGAACCAGA
65 ACGCTCATTTCGTGGGTTG-CTTAGGCATACGA-AG-TCATT-CCATGTCTAAGCCCCAGTCGGA
* * **
24317176 CTGAAGGTT-TCGTCAGCAGGATCAACAGCATG
126 CCGAAGGTTAT-GGCAGCAGGATCAACAGCACA
* * * * *
24317208 TAG-GGGGGACCGGG-TCGATCCTCGACTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCAC
1 CAGAGGGGGACCGGGCT-GATCCTCGACTTACGCATTCTGCCTCTCTGATCGGCTGAGCACCCGC
24317271 ACGCTCATTTCGTGGGTTAGCTTAGGCATACGAAGTACATTCCATGTCTAAGCCCCAGTCGGACC
65 ACGCTCATTTCGTGGGTT-GCTTAGGCATACGAAGT-CATTCCATGTCTAAGCCCCAGTCGGACC
* ** *
24317336 GAAGGTTGTGGCAGCAGGATCGGCAGCACG
128 GAAGGTTATGGCAGCAGGATCAACAGCACA
* * *** * * * *
24317366 TAGAGGAGGATTAGGCTGATCCCCGACTTGCACATTATGCCTCTC
1 CAGAGGGGGACCGGGCTGATCCTCGACTTACGCATTCTGCCTCTC
24317411 CAGCCGACCT
Statistics
Matches: 284, Mismatches: 63, Indels: 29
0.76 0.17 0.08
Matches are distributed among these distances:
157 5 0.02
158 126 0.44
159 149 0.52
160 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (157 bp):
CAGAGGGGGACCGGGCTGATCCTCGACTTACGCATTCTGCCTCTCTGATCGGCTGAGCACCCGCA
CGCTCATTTCGTGGGTTGCTTAGGCATACGAAGTCATTCCATGTCTAAGCCCCAGTCGGACCGAA
GGTTATGGCAGCAGGATCAACAGCACA
Found at i:24317498 original size:26 final size:26
Alignment explanation
Indices: 24317468--24317520 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24317458 GTTGACTGAG
24317468 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24317494 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24317520 G
1 G
24317521 ATTGAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24317806 original size:673 final size:675
Alignment explanation
Indices: 24316452--24317993 Score: 1785
Period size: 673 Copynumber: 2.3 Consensus size: 675
24316442 TCCAGTCTAA
* * *
24316452 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGA-TCGAGGGTTACGGGCAGCAGGATCGA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCAGACT-GAGGGTTAC-AGCAGCAGGATCGA
* * * * * * * *
24316516 CTGCACGCAGGAGGGACCGGGCCAATCCTCGGCTTGCGTATTCTACCTCTCCGACCGACTGAGCG
64 CAGCACGCAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
*
24316581 CCCACACGCTCGTTTCATGTGTTGTCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCC
129 CCCACACGCTCGTTTCATGGGTTG-CTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCC
* *
24316646 GGATCGAGGGTTGTGGCAACAGGACCGGCAGCGGGATTGGTAGCATGAAGAGGAGGACCAAGCTG
193 GGACCGAAGGTTGTGGCAACAGGACCGGCAGC-------G-AGCA-GAAGAGGAGGACCAAGCTG
* * * * * *
24316711 ATCCCCGGCTTACACATTATGCCTCTTCGATCGGCCTCTTTGACCGGCTGAGCACCCGCACGCTC
249 ATCCCCGACTTACACATTATGCCTCTCCGACCGACCTCTTCGACCGACTGAGCACCCGCACGCTC
* * *
24316776 ATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTGTAAGCATACAGAGTTCATTTCCA
314 ATTTCATGGGTTGACTGAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCA
* * * * *
24316841 GTCTAAGATCAAACTAGACCGAGGGTTGCGACAATAGGATTGGCAGTACGCAGAGGGGATCGGGC
379 GTCTAAGATCAAACGAGACCGAGGGTTGCGACAATAGGATCGACAGCACACAGAGGGGATCGGGC
* * * *
24316906 TGATCCTCGGCTCACGCATTCTGCCTCTCTGACCAGCTGAGCACCCGCACGCCCGTTTCATGGGT
444 TGATCCCCGGCTCACGCATTCAGCCTCTCCGACCAGCTGAGCACCCGCACGCCCATTTCATGGGT
* *
24316971 TGGCTTAGGCATACGAAGCTCATTCCATGTTTAAGCCCCAGTCGGACCGAGGGTTATGGCAGCGG
509 TGGCTTAGGCATACGAAGCTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGCAACGG
* ** *** *
24317036 GACCGACAGCACACAGAGGGGGACCGGGCTGATCCTTGGCTTACGCATTATGCCTCTTCGATCGG
574 GACCGACAACACACAGAGGGGGACCGGGCCAATCCCCAGCTTACGCATTATGCCGCTTCGATCGG
* **
24317101 CTAAGCACCTGCACGCTCATTTTGTAGGTTGACTTAT
639 CTAAGCACCTGCACACTCATTTCATAGGTTGACTTAT
* * * * *
24317138 GCATACAGAGTTCATTCCCAGTCTAGGATCGAACCAGACTGAAGGTTTC-GTCAGCAGGATCAAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTACAG-CAGCAGGATCGAC
* * * * *
24317202 AGCATGTAGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* * * *
24317267 CCACACGCTCATTTCGTGGGTTAGCTTAGGCATACGAAGTACATTCCATGTCTAAGCCCCAGTCG
130 CCACACGCTCGTTTCATGGGTT-GCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCG
* * * ** *
24317332 GACCGAAGGTTGTGGCAGCAGGATCGGCAGC-A-C-GTAGAGGAGGATTAGGCTGATCCCCGACT
194 GACCGAAGGTTGTGGCAACAGGACCGGCAGCGAGCAGAAGAGGAGGACCAAGCTGATCCCCGACT
* * * *
24317394 TGCACATTATGCCTCTCC-AGCCGACCT-TTCCGGCCGACTGAGCGCCCGCACGCTTATTTCATG
259 TACACATTATGCCTCTCCGA-CCGACCTCTT-CGACCGACTGAGCACCCGCACGCTCATTTCATG
* **
24317457 GGTTGACTGAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
322 GGTTGACTGAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
* * * ** * *
24317522 TTGAATCGA-ACCTA-GGTCTGCGGTAATAGGATCGATAGCACACAGGGGGGATCGGG-TCGATC
387 -TCAAACGAGACCGAGGGT-TGCGACAATAGGATCGACAGCACACAGAGGGGATCGGGCT-GATC
* ** * *
24317584 CCCGGCTTACGCATTCAGCCTCTCCGGTCAGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCT
449 CCCGGCTCACGCATTCAGCCTCTCCGACCAGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCT
** * * * **
24317649 TAGGTGTAGGGAGCTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAACGGGATGG
514 TAGGCATACGAAGCTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGCAACGGGACCG
* * * * * * *
24317714 GCAACACGCAGAGGGGGACCGGGCCAATCCCCAGCTTGCGTATTATGTCGCTTCG-GCTGGCTCA
579 ACAACACACAGAGGGGGACCGGGCCAATCCCCAGCTTACGCATTATGCCGCTTCGATC-GGCTAA
* * *
24317778 GCGCCTGCACACTCGTTTCATGGGTTGACTTAT
643 GCACCTGCACACTCATTTCATAGGTTGACTTAT
* * * * *
24317811 GCATACAGAGTTCATTCCCAATCTAAGATTGAATC-GAACCGAGGGTTGCAGCAGCAGGATCGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCAG-ACTGAGGGTTACAGCAGCAGGATCGAC
* * * * *
24317875 AGCACGCAGGGGGGATCGGGTCGATCTTCGGCTTGCGCATTCTGCCTCTCCGATTGGTTGAGCAC
65 AGCACGCAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* **
24317940 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTA
130 CCACACGCTCGTTTCATGGGTT-GCTTAGGCATACGGAGTACATTCCATGTCTA
24317994 GGCATACGAA
Statistics
Matches: 720, Mismatches: 125, Indels: 35
0.82 0.14 0.04
Matches are distributed among these distances:
672 9 0.01
673 510 0.71
674 6 0.01
675 1 0.00
676 1 0.00
684 1 0.00
685 149 0.21
686 42 0.06
687 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (675 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCAGACTGAGGGTTACAGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
CACACGCTCGTTTCATGGGTTGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGA
CCGAAGGTTGTGGCAACAGGACCGGCAGCGAGCAGAAGAGGAGGACCAAGCTGATCCCCGACTTA
CACATTATGCCTCTCCGACCGACCTCTTCGACCGACTGAGCACCCGCACGCTCATTTCATGGGTT
GACTGAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAA
ACGAGACCGAGGGTTGCGACAATAGGATCGACAGCACACAGAGGGGATCGGGCTGATCCCCGGCT
CACGCATTCAGCCTCTCCGACCAGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCAT
ACGAAGCTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGCAACGGGACCGACAACAC
ACAGAGGGGGACCGGGCCAATCCCCAGCTTACGCATTATGCCGCTTCGATCGGCTAAGCACCTGC
ACACTCATTTCATAGGTTGACTTAT
Found at i:24317973 original size:158 final size:158
Alignment explanation
Indices: 24317494--24317986 Score: 468
Period size: 158 Copynumber: 3.1 Consensus size: 158
24317484 CCCAGTCTAA
* * * *
24317494 GCATATGGAGTTCATTCCCAGTCTAAGATTGAATCGAACCTA-GGTCTGCGGTAATAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAATCGAACCGAGGGT-TGCGGCAACAGGATCGAT
* * * **
24317558 AGCACACAGGGGGGATCGGGTCGATCCCCGGCTTACGCATTCAGCCTCTCCGGTCAGCTGAGCGC
65 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCGC
* * *
24317623 CCGCACGCCCATTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
** * * **** * * * * * **
24317652 GTGTAGGGAGCTCATT-CCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAACGGGATGGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATTGAATCGAACCGAGGGTTGCGGCAACAGGATCGAT
* * * * * * * * * * * *
24317716 AACACGCAGAGGGGGACCGGGCCAATCCCCAGCTTGCGTATTATGTCGCTTCGGCTGGCTCAGCG
65 AGCACGCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCG
* * * *
24317781 CCTGCACACTCGTTTCATGGGTTGACTTAT
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
24317811 GCATACAGAGTTCATTCCCAATCTAAGATTGAATCGAACCGAGGGTTGCAGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAATCGAACCGAGGGTTGCGGCAACAGGATCGATA
** * * *
24317876 GCACGCAGGGGGGATCGGGTCGATCTTCGGCTTGCGCATTCTGCCTCTCCGATTGGTTGAGCACC
66 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCGCC
24317941 CGCACGCTCGTTTCATGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGGCTTAG
*
24317969 GCATACGGAGTTTATTCC
1 GCATACGGAGTTCATTCC
24317987 ATGTCTAGGC
Statistics
Matches: 247, Mismatches: 84, Indels: 8
0.73 0.25 0.02
Matches are distributed among these distances:
157 3 0.01
158 126 0.51
159 115 0.47
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGAATCGAACCGAGGGTTGCGGCAACAGGATCGATA
GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:24320507 original size:26 final size:26
Alignment explanation
Indices: 24320477--24320529 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24320467 GTTGACTTAG
*
24320477 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
*
24320503 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
24320529 G
1 G
24320530 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:24321149 original size:26 final size:26
Alignment explanation
Indices: 24321120--24321172 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24321110 GTTGGCTTAG
*
24321120 GCATAAGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGCTCATTCCCA-GTCTAA
*
24321146 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATAAGGAGCTCATTCCCAGTCTAA
24321172 G
1 G
24321173 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGCTCATTCCCAGTCTAA
Found at i:24323396 original size:26 final size:26
Alignment explanation
Indices: 24323367--24323419 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24323357 GTTGGCTCAG
24323367 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24323393 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24323419 G
1 G
24323420 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24324632 original size:26 final size:26
Alignment explanation
Indices: 24324603--24324655 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24324593 GTTGGCTCAG
24324603 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24324629 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24324655 G
1 G
24324656 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24325591 original size:26 final size:26
Alignment explanation
Indices: 24325555--24325607 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24325545 GTTGACTTAG
*
24325555 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
24325581 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
24325607 G
1 G
24325608 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:24326807 original size:159 final size:153
Alignment explanation
Indices: 24326307--24326809 Score: 379
Period size: 159 Copynumber: 3.2 Consensus size: 153
24326297 CCCAGTCTAA
* * * * *
24326307 GCATCCGGAGTTCATTCACAGTCTAAGATCGGACTGGATCAAGGGTTGCGATAGTAGGATCGATA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCGGAC-GGATCGAGGGTTGCGGTAGCAGGATCGACA
* * * *
24326372 GCACACA-GGAGGGATCGGGCTGATCCCTGGTTTACGCATTCTACCTCTCTGGCTGGCTGAGCAC
64 GAACACAGGGGGGGATCGGGC-GATCCCTGGCTTACGCATTCTGCCTCTC-GGCT--CTGAGCAC
* * *
24326436 CCGCACACCCATTTCATGTGTTGGCTTAG
125 CCGCACGCTCATTTCATGAGTTGGCTTAG
* * ** * * * * * * *
24326465 GCATAGGGAGCTCATTCCATGTCTAAGCCCTAGCCGGA-CTGAAGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAGATC-GGACGGATC-GAGGGTTGCGGTAGCAGGATCGAC
* * * * * *
24326529 --AACGCGTAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCT-GGATCA
63 AGAACAC--AGGGGGGGATCGGG-CGATCCCTGGCTTACGCATTCTGCCTC-TCGGCTCTGAGC-
* * * * * *
24326591 ATGCCTGCATGCTCATCTCATGGGTTGACTTAT
123 A--CCCGCACGCTCATTTCATGAGTTGGCTTAG
* * *
24326624 GCATACAGAGTTCATTGTCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAAGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGA-CGGATCGAGGGTTGCGGTAGCAGGATCGACA
**
24326689 GAACACAGGGGGGGA-CTGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCAACCTACTGAGCA
64 GAACACAGGGGGGGATC-GGG-CGATCCCTGGCTTACGCATTCTGCCTCT-C-GGCT-CTGAGCA
24326753 CCCGCACGCTCATTTCATGAGTTGGCTTAG
124 CCCGCACGCTCATTTCATGAGTTGGCTTAG
*
24326783 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
24326810 CATACGGAGC
Statistics
Matches: 257, Mismatches: 66, Indels: 43
0.70 0.18 0.12
Matches are distributed among these distances:
156 6 0.02
157 4 0.02
158 46 0.18
159 185 0.72
160 8 0.03
161 5 0.02
162 3 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (153 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACGGATCGAGGGTTGCGGTAGCAGGATCGACAGA
ACACAGGGGGGGATCGGGCGATCCCTGGCTTACGCATTCTGCCTCTCGGCTCTGAGCACCCGCAC
GCTCATTTCATGAGTTGGCTTAG
Found at i:24327492 original size:26 final size:26
Alignment explanation
Indices: 24327456--24327508 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24327446 GTTGACTTAG
*
24327456 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24327482 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24327508 G
1 G
24327509 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24328008 original size:171 final size:170
Alignment explanation
Indices: 24327531--24328009 Score: 507
Period size: 171 Copynumber: 2.8 Consensus size: 170
24327521 CGAGGGTTGT
* * * *
24327531 GGCAGCAGGATCGACAACATGCAG-GGGGGACTGGGTCGATCCTCAGCTTGCGCATTCTGCCTCT
1 GGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGTTGATCC-CAGCTTGCGCATTATGCCTCT
* * * * *
24327595 CCGGCCGGTTGAGCGCCCGGATGCTCATTTCGTGGGTTGGA-TTAGGCATACGGACTACATTCCA
65 CCGGTCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTT-GACTTAGGCATACAGAGTACATTCCA
* *
24327659 CGTCTAAGCCCCAGCCGAATCGAGGGTTGTGGCAGCAGGACC
129 CGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACC
* * * * * * *
24327701 AGTAGCGGGAT-TAGCAGTACGCAGAGGGGGACTGGGCTAATCCCAAGCTTGCGCATTATGCCTC
1 GGCAGCAGGATCGA-CAGCACGCAGAGGGGGACTGGGTTGATCCC-AGCTTGCGCATTATGCCTC
* * ** * ** * * *
24327765 TCTGGTCGGCTGAGTACCTGCACGCTTGTTTCGTGGGTTGGCTTAGGCGTATAGAGTACATTCCA
64 TCCGGTCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTACATTCCA
** * * * *
24327830 CGTCTAAGCTGCAATCGGACCGAGGGTTGTGGTAGTAGGACC
129 CGTCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACC
* * *
24327872 GGCATCAGGATCGACAGCACGCAGAGGGGGACTGGGTTGATCCCCGTCTTGTGCATTATGCCTCT
1 GGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGTTGATCCCAG-CTTGCGCATTATGCCTCT
* * * *
24327937 CCGGTCGATTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA-TCCCC
65 CCGGTCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTACATTCCAC
24328001 AGTCTAAGC
130 -GTCTAAGC
24328010 ATACGGAGTT
Statistics
Matches: 244, Mismatches: 58, Indels: 13
0.77 0.18 0.04
Matches are distributed among these distances:
169 1 0.00
170 22 0.09
171 220 0.90
172 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.23
Consensus pattern (170 bp):
GGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGTTGATCCCAGCTTGCGCATTATGCCTCTC
CGGTCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTACATTCCACG
TCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCAGGACC
Found at i:24328012 original size:26 final size:26
Alignment explanation
Indices: 24327982--24328031 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
24327972 GTTGACTTAG
*
24327982 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
* *
24328008 GCATACGGAGTTCATTCACAGTCT
1 GCATACAGAGTTCATCCACAGTCT
24328032 TAGATCAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:24328484 original size:526 final size:518
Alignment explanation
Indices: 24327406--24328512 Score: 1133
Period size: 526 Copynumber: 2.1 Consensus size: 518
24327396 GCGCATCCTG
* * * *
24327406 CCTCTCTGGTCAGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
* * *
24327471 CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAG
66 CCCCAGTCTAAGCATACAGAGTTCATTCACAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAG
* * * *
24327536 CAGGATCGACAACATGCAGGGGGGACTGGGTCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGCC
131 CAGGATCGACAACATGCAAGGGGGACTGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACC
* ** * * * *
24327601 GGTTGAGCGCCCGGATGCTCATTTCGTGGGTTGGATTAGGCATACGGACTACATTCCACGTCTAA
196 GGCTGAGCGCCCACACGCTCATTTCATGGGTTGGATTAGGCATACGAACTACATTCCACATCTAA
* * * *
24327666 GCCCCAGCCGAATCGAGGGTTGTGGCAGCAGGACCAGTAGCGGGATTAGCAGTACGCAGAGGGGG
261 GCCCCAGCCGAATCGAGGGTTGTGGCAGCAGGACCAGCAGCAGGATGAGCAGAACGCAGAGGGGG
* * * *
24327731 ACTGGGCTAATCCCAAGCTTGCGCATTATGCCTCTCTGGTCGGCTGAGTACCTGCACGCTTGTTT
326 ACTGGGCTAATCCCAAGCTTGCGCATTATGCCTCTCTGGTCGACTGAGCACCCGCACGCTCGTTT
* * * * * *
24327796 CGTGGGTTGGCTTAGGCGTATAGAGTACATTCCACGTCTAAGCTGCAATCGGACCGAGGGTTGTG
391 CGTGGGTTGACTCAGGCATACAGAGTACATTCCACATCTAAGCTGCAATCGGACCGA-----GAG
* * * * *** * * **
24327861 GTAGTAGGACCGGCATCAGGATCGACAGCACGCAGAGGGGGACTGGGTTGATCCCCGTCTTGTGC
451 GTA-TA-GA-CGACAGCAGGATCGACAGCACACAGAGGGGGACTGAGCCAATCCCAGGCTTACGC
*
24327926 ATTATG
513 ATTATA
* ** *
24327932 CCTCTCCGGTCGATTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT
1 CCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
* * *
24327997 CCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTTAGATCAGATCGGATTGAGGGTTGCGACAG
66 CCCCAGTCTAAGCATACAGAGTTCATTCACAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAG
* * * *
24328062 CAGGATCGACAGCATGCAAGGGGGA-TCGAGTCGATCCCCGGCTTGTGCATTCTGCCTCTCTGAC
131 CAGGATCGACAACATGCAAGGGGGACT-GAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGAC
* ** * * * *
24328126 CGGCTGAGCGCTCACACGCTTGTTTTATGGGTTGGCTTAGGTATACGAAGTACATTCCACATCTA
195 CGGCTGAGCGCCCACACGCTCATTTCATGGGTTGGATTAGGCATACGAACTACATTCCACATCT-
* * *
24328191 AAG-CCCAGTCGGATCGAGGGTTGTGGCAGCAGGACTAGCAGCAGGATCGA-CAGAACGCAGAGG
259 AAGCCCCAGCCGAATCGAGGGTTGTGGCAGCAGGACCAGCAGCAGGAT-GAGCAGAACGCAGAGG
* **
24328254 GGGA-TAGGGCTGATCCCCGGCTTGCGCATTATACCTTTCCGATCGGCCTCTCTGGTCGACTGAG
323 GGGACT-GGGCTAATCCCAAGCTTGCGC-----A---TT---AT--GCCTCTCTGGTCGACTGAG
* * * * *
24328318 CGCCCGCACGCTCGTTTCGTGGGTTGACTCAGGCATACGGAGTGCATTCC-CAATCTAAGAT-TA
374 CACCCGCACGCTCGTTTCGTGGGTTGACTCAGGCATACAGAGTACATTCCAC-ATCTAAGCTGCA
* *
24328381 GA-CTGGACTGA-AGGT-T-G-CGACAGCAGGATCGATAGCACACAGA-GGGGA-TCGAGCCAAT
438 -ATC-GGACCGAGAGGTATAGACGACAGCAGGATCGACAGCACACAGAGGGGGACT-GAGCCAAT
* *
24328439 CCCAGGCTTACGTATTTTA
500 CCCAGGCTTACGCATTATA
* * * *
24328458 CCTCTCTGGTCGGCTGAGCACCCGCACGCCCCTTTCGTGGGTTGGCTTAGGCATA
1 CCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
24328513 GGGAGCTCAT
Statistics
Matches: 475, Mismatches: 85, Indels: 42
0.79 0.14 0.07
Matches are distributed among these distances:
525 3 0.01
526 361 0.76
527 26 0.05
529 1 0.00
531 2 0.00
533 3 0.01
534 2 0.00
537 2 0.00
538 3 0.01
539 72 0.15
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (518 bp):
CCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
CCCCAGTCTAAGCATACAGAGTTCATTCACAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAG
CAGGATCGACAACATGCAAGGGGGACTGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACC
GGCTGAGCGCCCACACGCTCATTTCATGGGTTGGATTAGGCATACGAACTACATTCCACATCTAA
GCCCCAGCCGAATCGAGGGTTGTGGCAGCAGGACCAGCAGCAGGATGAGCAGAACGCAGAGGGGG
ACTGGGCTAATCCCAAGCTTGCGCATTATGCCTCTCTGGTCGACTGAGCACCCGCACGCTCGTTT
CGTGGGTTGACTCAGGCATACAGAGTACATTCCACATCTAAGCTGCAATCGGACCGAGAGGTATA
GACGACAGCAGGATCGACAGCACACAGAGGGGGACTGAGCCAATCCCAGGCTTACGCATTATA
Found at i:24329250 original size:26 final size:26
Alignment explanation
Indices: 24329214--24329266 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24329204 GTTGCCTTAG
24329214 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24329240 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24329266 G
1 G
24329267 ATTGGGCTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24329766 original size:171 final size:170
Alignment explanation
Indices: 24329317--24329745 Score: 522
Period size: 171 Copynumber: 2.5 Consensus size: 170
24329307 ATGTAGAGGA
* *
24329317 GATCGGG-TTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCTGCACGCACGT
1 GATCGGGCTT-ATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCC-GCACGCTCGT
* * *
24329381 TTCATGGGTTGGCTAAGGCATACGGAGTACATTCCACGTCTAAG-ACCAGCCGGACTGAGGGTTG
64 TTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCACCAGCCGGACCGAGGGTTG
* * * *
24329445 TGGTAGTAGGACCGGCAGGTGGATCGGCAGCACACAGAAGGG
129 TGGCAGCAGGACCGACAGATGGATCGGCAGCACACAGAAGGG
* * ** * ** *
24329487 GACCGGGCTAATCTTCGGCTTACGCATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCACGCTCGTT
1 GATCGGGCTTATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCG-CCGCACGCTCGTT
** * *
24329552 TCGTCAGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGT
65 TCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCACCAGCCGGACCGAGGGTTGT
* * * *
24329617 GGCAGCGGGACCGACAGCAT-GATCTGCAGCACGCAGAGGGG
130 GGCAGCAGGACCGACAG-ATGGATCGGCAGCACACAGAAGGG
** * *
24329658 GATCGGGCTTATCCCCGGCTTACGCATTAAGCCTCTCTGGCCGACTGAGCGTTCGCACGCTCGTT
1 GATCGGGCTTATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCG-CCGCACGCTCGTT
*
24329723 TCGTGGGTTGACTTAGGCATACG
65 TCGTGGGTTGGCTTAGGCATACG
24329746 AAATTCATCC
Statistics
Matches: 214, Mismatches: 41, Indels: 7
0.82 0.16 0.03
Matches are distributed among these distances:
170 89 0.42
171 124 0.58
172 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (170 bp):
GATCGGGCTTATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCGCCGCACGCTCGTTT
CGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCACCAGCCGGACCGAGGGTTGTG
GCAGCAGGACCGACAGATGGATCGGCAGCACACAGAAGGG
Found at i:24329778 original size:26 final size:26
Alignment explanation
Indices: 24329739--24329792 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
24329729 GTTGACTTAG
24329739 GCATACGAAATTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
* * *
24329765 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
24329791 GC
1 GC
24329793 TAGGATCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.24
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:24330136 original size:26 final size:26
Alignment explanation
Indices: 24330107--24330159 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24330097 GTTGACATAG
*
24330107 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24330133 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24330159 G
1 G
24330160 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24330236 original size:368 final size:355
Alignment explanation
Indices: 24329511--24330300 Score: 983
Period size: 368 Copynumber: 2.2 Consensus size: 355
24329501 TCGGCTTACG
* * * **
24329511 CATTCTGCCTCTCCGGTCGGTTGAGTGCCCGCACGCTCGTTTCGTCAGTTGGCTTAGGCATACGG
1 CATTCTACCTCTCTGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * * *
24329576 AGTACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCATGATC
66 AGTACATTCCACATCTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCAGGACCGACAACAGGATC
* **
24329641 TGCAGCACGCAGAGGGGGATCGGGCTTATCCCCGGCTTACGCATTAAGCCTCTCTGGCCGACTGA
131 TGCAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTACGCAGCAAGCCTCTCTGGCCGACTGA
** *
24329706 GCGTTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATAC
196 GCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGAAATTCATCCCCAGTCTAAGCATAC
* * ** * * * *
24329771 GGAGTTCATTCCCAGTCTAAGCTAGGATCGGATTGAAGGTTTCGACGGTAGGATCGACAGCACGT
261 AGAGTTCATTCCCAGTCTAAGATAGGATCGGACCGAAGGTTACGACAGCAGGATCGACAGCACGC
*
24329836 AGGGGGGACTGGGCCGATCCCCAACTTGCA
326 AGGGGGGACCGGGCCGATCCCCAACTTGCA
* *
24329866 CATTTTACCTCTCTGGTCGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
1 CATTCTACCTCTCTGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * *
24329931 AGTACATTCCACATCTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCAGGACTGGCAACGGGATC
66 AGTACATTCCACATCTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCAGGACCGACAACAGGATC
* * *
24329996 -GACAGCACGTAGAGGGGGATCGGGCTGATCCCCGGCTTACGTAGCATGCCTCTCTGGCCGGCCT
131 TG-CAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTACGCAGCAAGCCTCTCT----GG---
* * *
24330060 CTCCGATCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATCCC
188 ---C---CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGAAATTCATCCC
* **
24330125 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA-GATCGGACCGAGGGTTACGGTAGCA
247 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT-AGGATCGGACCGAAGGTTACGACAGCA
* * *
24330189 GGATCGATAGCACGCAGGGGGGACCGGGCCGATCCTCGACTTGCA
311 GGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCAACTTGCA
* * * * *
24330234 CATTCTACTTCT-TCGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGG
1 CATTCTACCTCTCT-GGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
24330298 GAG
65 GAG
24330301 CTCATTCTAT
Statistics
Matches: 369, Mismatches: 50, Indels: 19
0.84 0.11 0.04
Matches are distributed among these distances:
354 1 0.00
355 161 0.44
359 2 0.01
365 1 0.00
367 1 0.00
368 202 0.55
369 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (355 bp):
CATTCTACCTCTCTGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
AGTACATTCCACATCTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCAGGACCGACAACAGGATC
TGCAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTACGCAGCAAGCCTCTCTGGCCGACTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGAAATTCATCCCCAGTCTAAGCATAC
AGAGTTCATTCCCAGTCTAAGATAGGATCGGACCGAAGGTTACGACAGCAGGATCGACAGCACGC
AGGGGGGACCGGGCCGATCCCCAACTTGCA
Found at i:24330429 original size:159 final size:157
Alignment explanation
Indices: 24330133--24330635 Score: 499
Period size: 159 Copynumber: 3.2 Consensus size: 157
24330123 CCCAGTCTAA
* * * * * * * *
24330133 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTACGGTAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGATCGGACCAAGGGTTGCGGCAGCAGAACCGAC
* * * * * *
24330197 AGCACGCAGGGGGGACCGGGCCGATCCTCGACTTGCACATTCTACTTCTTCGGCCGGCTGAGCGC
65 AGCACACAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTC-GCCGGCTGAGCGC
* *
24330262 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * *** * * * *
24330291 GCATAGGGAGCTCATTCTATGTCTACGCCCCAG-TCGGTCTGCGGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGATCGGACCAAGGGTTGCGGCAGCAGAACCGAC
* * *
24330355 AGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCG
65 AGCACACAG-GGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCG-CCGGCTGAGCG
* * *
24330420 CCCGCACGCTCGTTTCATGGGCTGACTTAT
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
24330450 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCAAGGGTTGCGGTAGCAGAATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGATCGGACCAAGGGTTGCGGCAGCAGAACCGAC
* * *
24330514 AGCACACAGGGGGGGACCGGGTCGATCCTCGGCTTACGTATTCTGCCTCTTCTGCCAGCTGAGCG
65 AGCACACA-GGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTC-GCCGGCTGAGCG
** * * *
24330579 CCAACACGCTCATTTAATGTGTTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
24330609 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
24330636 CATACGGAGC
Statistics
Matches: 275, Mismatches: 61, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 55 0.20
159 214 0.78
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGATCGGACCAAGGGTTGCGGCAGCAGAACCGACA
GCACACAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGCCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:24331725 original size:26 final size:26
Alignment explanation
Indices: 24331686--24331738 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24331676 GTTAACTTAG
* *
24331686 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAATTCATCCCCAGTCTAA
*
24331712 GCATAAGGAATTCATTCCCAGTCTAA
1 GCATAAGGAATTCATCCCCAGTCTAA
24331738 G
1 G
24331739 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATAAGGAATTCATCCCCAGTCTAA
Found at i:24331986 original size:183 final size:184
Alignment explanation
Indices: 24331583--24332063 Score: 633
Period size: 183 Copynumber: 2.6 Consensus size: 184
24331573 AACGACAATG
* * * *
24331583 GGATCGGCAGTACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATCCTCCCTTTCTGGTCG
1 GGATCGGCAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTATCTGGTCG
* * * *
24331648 GCTGAGCACCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
65 GTTGAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* *
24331713 CATAAGGAATTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGTGGCAGCA
130 CATAAGGAATTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTATGACAGCA
* * * *
24331768 GGATCGGCAGCACGCAGGGGGGACCAAGTCGATCCCTGGCTTGCGCATTTTGCCTATCTGGTCGG
1 GGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTATCTGGTCGG
* * * * *
24331833 TTGAGCGCTCGCACGTTCGTTTCATGGGTTGACTTAGGTATATGGAGTTCATCCCCAGTCTAAGC
66 TTGAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * **
24331898 ATCA-GAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTATGACAGCA
131 ATAAGGAATTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTATGACAGCA
* * * ** * * * *
24331951 GGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTTTGCATTCTGCCTCTC-CGACCG
1 GGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTATCTGGTCGG
*
24332015 TCTGAGCGCCCGCACGTTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
66 T-TGAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGT
24332064 ACATTCCACA
Statistics
Matches: 253, Mismatches: 42, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
182 4 0.02
183 133 0.53
184 100 0.40
185 16 0.06
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (184 bp):
GGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTATCTGGTCGG
TTGAGCGCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATAAGGAATTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTATGACAGCA
Found at i:24332201 original size:159 final size:160
Alignment explanation
Indices: 24331902--24332389 Score: 413
Period size: 159 Copynumber: 3.1 Consensus size: 160
24331892 CTAAGCATCA
* * * ** * ** * *
24331902 GAGTTCATTCC-CAGTCTAAGATCGGACCGGATCGAGGGTTATGACAGCAGGATCGACAGCACG-
1 GAGTTCATTCCACAGACTCAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGACCGACAGCACGT
* *** * ** * *
24331965 CAGGGGGGACCGGGCCGATCCCC-GACTTTTGCATTCTGCCTCTCCGACCGTCTGAGCGCCCGCA
66 AAGGGGGGACCGGGCCGATCCCCAG-CTTGCACATTATGCCTCTCCGGTCGGCTCAGCGCCCGCA
* *
24332029 CG-TTCATTTCGTGGGTTGGCTTAGGCATACG
130 CGCTT-GTTTCGTGGGTTGGCTTAGACATACG
* * * *
24332060 GAGTACATTCCACA-ACT-A-ATCCCTAG-CCAAATCGAGGGTTGTGGCAGTAGGACC-AGCAGC
1 GAGTTCATTCCACAGACTCAGAT--C-AGACCAAACCGAGGGTTGCGGCAGCAGGACCGA-CAGC
* * * * *
24332120 ACGT-AGAGGGGGATCGGGCCGATCCTCAGCTTGTACATTATGCCTCTTCGGTCGGCTCAGTGCC
62 ACGTAAG-GGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCGCC
** *
24332184 CGCACGCTTGTTTCGTGGGTTAACTTATACATACG
126 CGCACGCTTGTTTCGTGGGTTGGCTTAGACATACG
* ** * * *
24332219 GAGTTCATTCC-CAGTCTCAGATCAGATTAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGT
1 GAGTTCATTCCACAGACTCAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGACCGACAGCACGT
* * * * * * *
24332283 AAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTTCCTCTCCGGTTGGCTGAGCGCCCGCAC
66 AAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCGCCCGCAC
*
24332348 GCTCGTTTCGTGGGTTGGCTTAGACATACG
131 GCTTGTTTCGTGGGTTGGCTTAGACATACG
24332378 GAGTTCATTCCA
1 GAGTTCATTCCA
24332390 TGTCTAAGCA
Statistics
Matches: 263, Mismatches: 51, Indels: 30
0.76 0.15 0.09
Matches are distributed among these distances:
156 2 0.01
157 2 0.01
158 48 0.18
159 202 0.77
160 7 0.03
161 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (160 bp):
GAGTTCATTCCACAGACTCAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGACCGACAGCACGT
AAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCGCCCGCAC
GCTTGTTTCGTGGGTTGGCTTAGACATACG
Found at i:24332421 original size:26 final size:26
Alignment explanation
Indices: 24332372--24332423 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24332362 TTGGCTTAGA
* *
24332372 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGCTCATTCCATATCTAAG
24332398 CATACGGAGCTCATTTCCA-ATCTAAG
1 CATACGGAGCTCA-TTCCATATCTAAG
24332424 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGCTCATTCCATATCTAAG
Found at i:24333130 original size:26 final size:26
Alignment explanation
Indices: 24333093--24333145 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24333083 GTTGACTTAG
24333093 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
24333119 GCATAC-AGAGTTCATCCCTAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
24333145 G
1 G
24333146 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24333499 original size:26 final size:26
Alignment explanation
Indices: 24333463--24333513 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24333453 TGACTTAGGG
*
24333463 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
*
24333489 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
24333514 ATCGGACAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:24334715 original size:26 final size:26
Alignment explanation
Indices: 24334685--24334737 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24334675 GTTGACTTAG
*
24334685 GCATACAGATTTCATGCCCAATCTAA
1 GCATACAGAGTTCATGCCCAATCTAA
* * *
24334711 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATGCCCAATCTAA
24334737 G
1 G
24334738 ATTAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATGCCCAATCTAA
Found at i:24335087 original size:26 final size:26
Alignment explanation
Indices: 24335051--24335103 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24335041 GTTGACTTAG
*
24335051 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
24335077 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24335103 G
1 G
24335104 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24335971 original size:710 final size:705
Alignment explanation
Indices: 24334610--24335971 Score: 1543
Period size: 710 Copynumber: 1.9 Consensus size: 705
24334600 CTACCACCCA
* * * *
24334610 TTCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGTCGGTTGAGCGCCTGCACGCTCATTTCGTGG
1 TTCGATCCCCAGCTTGCGCATCCCGCCTCTCCGATCGATTGAGCGCCTGCACGCTCATTTCGTGG
* * *
24334675 GTTGACTTAGGCATACAGATTTCATGCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
66 GTTAACTTAGGCATACAGAGTTCATGCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGAT
* * * * *
24334740 TAGATCGGATCGAGAGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGATCGAGCTGATCCCCG
131 CAGACCGGATCGAGAGTTGCGATAACAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCG
* * *
24334805 GCTTGCGCATTCTGCCTCCGGCCGACTGAGTGCCCGCACGCTCATTTCATGAATTGGCTTAGGCA
196 GCTTGAGCATTCTGCCTCCAGCCGACTGAGTGCCCGCACACTCATTTCATGAATTGGCTTAGGCA
* * *
24334870 TACGGAGTACATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGTG
261 TACAGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGATGTGGCAGCAGGACCGACAGTG
* * *
24334935 GGATCGACAGCACGCAAAGGGGGATCGGGCTAATCCTCGACTTGCGTATTATGCCTCTTCGATCG
326 GGATAGACAGCACGCAAAGGGGGATCGAGCTAATCCTC-ACTTGCGTATTATGCCTATTC-ATC-
*** * * * * *
24335000 ACCTCTTCGGTTGGCTAAGCGCCCTCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
388 ACCTCTTCGACCGACTAAGCGCCCGCACGCTCGTTTCGAGGGTTGACTTAGGAATACGAAGTTCA
*
24335065 TCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAAATCAAGGGTTACGGTA
453 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAATCAAGGGTTACGGTA
* * * * * *
24335130 GCAAGATCAGCAGCACGTAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAC
518 GCAAGATCAGCAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCAGCCTCTCCAAC
* *** * *
24335195 CGATTGAGCGCCCGCATGCTTGTTTCATGGGTTGACTTATGCATACAAAGTTCATTCCCAGTCTA
583 CGATTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACAAAGCTCATTCCCAGTCTA
24335260 AGATCGGATCGGACCGAGGGTTGAGACAGCAGGATCGACAGCACGTGGGGGGGACCAG
648 AGATCGGATCGGACCGAGGGTTGAGACAGCAGGATCGACAGCACGTGGGGGGGACCAG
* * * * *
24335318 TTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGATTGAGTGCCCT-CACGCTCGTTTTGTG
1 TTCGATCCCCAGCTTGCGCATCCCGCCTCTCCGATCGATTGAGCG-CCTGCACGCTCATTTCGTG
* * *
24335382 GGTTAACTTAGGCATAC-GAAGTTCAT-CCTTAGTCTAAGCATACGGAGTTCGTTCCCAATCTAA
65 GGTTAACTTAGGCATACAG-AGTTCATGCC-CAATCTAAGCATACGGAGTTCATTCCCAATCTAA
* ** * *
24335445 GATCAGACCGGATCGAGGGTTGC-AGTAACAGGATCGGTAGCACGTAGGTGGGACC-AGGCCGAT
128 GATCAGACCGGATCGAGAGTTGCGA-TAACAGGATCGACAGCACGCAGGGGGGACCGA-GCCGAT
* * * ** * * **
24335508 GCTCGGCTTGAGCATTCTGCCTTTTCAGCCGGTTGAGTGCCCGCACATTCGTTTCATGGGTTGGC
191 CCCCGGCTTGAGCATTCTGCC--TCCAGCCGACTGAGTGCCCGCACACTCATTTCATGAATTGGC
* * *
24335573 TTAGGTATACAGAGTACATTCCACGTCTAAGCCCTAGCCGGATCGAGGGATGTGGCAGCAGGACC
254 TTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGATGTGGCAGCAGGA-C
* *
24335638 CGGTAGCGAGATCGGTAGCGGGATAGACAGCATGCAAAGGGGGATCGAGCTGAT-C-C-C-TG-G
318 C-G-A-C---A---GT---GGGATAGACAGCACGCAAAGGGGGATCGAGCTAATCCTCACTTGCG
* * * * *
24335698 -CTTATG-C-ATT-AT-ACCTTTTCGACCGACTGAGCGCTCGCACGCTCGTTTTGAGGGTTGACT
371 TATTATGCCTATTCATCACCTCTTCGACCGACTAAGCGCCCGCACGCTCGTTTCGAGGGTTGACT
* * * *
24335758 TAGGAATATGAAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
436 TAGGAATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * * *
24335823 GA-CTGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGGGTGGACCGAGCCGATCCCCGGCTTGC
501 AATC-AAGGGTTACGGTAGCAAGATCAGCAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGC
* * * ** **
24335887 GCATTCAGCCTCTCCAACTGGTTGAGTGCCCGCACGCCCATTTCATGGGTTGGGTTAGGCATAGG
565 GCATTCAGCCTCTCCAACCGATTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACA
*
24335952 GAGCTCATT-CCATGTCTAAG
630 AAGCTCATTCCCA-GTCTAAG
24335972 CCCTAGTCGG
Statistics
Matches: 539, Mismatches: 93, Indels: 42
0.80 0.14 0.06
Matches are distributed among these distances:
707 5 0.01
708 170 0.32
709 7 0.01
710 302 0.56
711 2 0.00
712 3 0.01
713 1 0.00
714 3 0.01
715 1 0.00
716 5 0.01
717 2 0.00
718 2 0.00
719 1 0.00
720 2 0.00
721 1 0.00
722 1 0.00
723 31 0.06
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (705 bp):
TTCGATCCCCAGCTTGCGCATCCCGCCTCTCCGATCGATTGAGCGCCTGCACGCTCATTTCGTGG
GTTAACTTAGGCATACAGAGTTCATGCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGAT
CAGACCGGATCGAGAGTTGCGATAACAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCG
GCTTGAGCATTCTGCCTCCAGCCGACTGAGTGCCCGCACACTCATTTCATGAATTGGCTTAGGCA
TACAGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGATGTGGCAGCAGGACCGACAGTG
GGATAGACAGCACGCAAAGGGGGATCGAGCTAATCCTCACTTGCGTATTATGCCTATTCATCACC
TCTTCGACCGACTAAGCGCCCGCACGCTCGTTTCGAGGGTTGACTTAGGAATACGAAGTTCATCC
CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAATCAAGGGTTACGGTAGCA
AGATCAGCAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCAGCCTCTCCAACCGA
TTGAGCGCCCGCACGCCCATTTCATGGGTTGACTTAGGCATACAAAGCTCATTCCCAGTCTAAGA
TCGGATCGGACCGAGGGTTGAGACAGCAGGATCGACAGCACGTGGGGGGGACCAG
Found at i:24336477 original size:151 final size:152
Alignment explanation
Indices: 24336028--24336587 Score: 486
Period size: 151 Copynumber: 3.6 Consensus size: 152
24336018 AGGGGGACCG
* * * *
24336028 GGCT-GATCCCCAGCTTACGCATTATGCCTCTTCGGCTTGCTCAGCACCCACATGCTCGTTTCGT
1 GGCTCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCTGCTCAGCACCCACACGCTCGTTTCAT
* * * **
24336092 GGGTTGACTTATGG-ATACGGAGTTCATTGCCAGTCTAAGATCAGA-CTGGATCGAGGATTACAA
66 GGGTTGACTTA-GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGATTGCGG
* *
24336155 CAGCAGGATCAACAGCACGTAGGGG
129 CAGCAGGATCGACAGCACGTA-GGA
* * * * ** *
24336180 GGACCAGGTCGATCCCCAGCTTGCGCATTCTGTCTC-TCTGACCTGCTGAGTGCCCGCACGCTCG
1 GG--C---TCGATCCCCAGCTTGCGCATTATGCCTCTTC-GGCCTGCTCAGCACCCACACGCTCG
* * * ** **
24336244 TTTCATGGGTTGGCTTAGGCATAGGGAGCTCATT-CCATGAATAAGCCCCAG-TCGGACCGAGGA
60 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGA
* *
24336307 TTGTGGCAGCAGGACCGACAGCACGTA-GA
123 TTGCGGCAGCAGGATCGACAGCACGTAGGA
* * * *
24336336 GGCTCGATCCCCGGCTTGCTCATTATGCCTCTTCGGCCGGCTCAGCACCCACACGCTTGTTTCAT
1 GGCTCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCTGCTCAGCACCCACACGCTCGTTTCAT
* * * * *
24336401 GGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCAAGGGTTGCGGTA
66 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGATTGCGGCA
*
24336466 GCAAGATCGACAGCACGTAGGGGGA
131 GCAGGATCGACAGCACGTA---GGA
* ** * * * * * * *
24336491 CCGGGTCGATCCCTGGCTTGCGCATTCTGCCACTCCAGCTTGCTGAGCACCCGCACGCTCGTTTC
1 --GGCTCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCTGCTCAGCACCCACACGCTCGTTTC
* *
24336556 GTGGGTTGGCTTAGGCATACGGAGTTCATTCC
64 ATGGGTTGACTTAGGCATACGGAGTTCATTCC
24336588 ATGTGCTAAT
Statistics
Matches: 321, Mismatches: 67, Indels: 35
0.76 0.16 0.08
Matches are distributed among these distances:
150 3 0.01
151 109 0.34
152 7 0.02
154 2 0.01
155 2 0.01
156 3 0.01
157 88 0.27
158 103 0.32
159 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (152 bp):
GGCTCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCTGCTCAGCACCCACACGCTCGTTTCAT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGATTGCGGCA
GCAGGATCGACAGCACGTAGGA
Found at i:24337637 original size:26 final size:26
Alignment explanation
Indices: 24337601--24337653 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24337591 GTTGACTTAG
*
24337601 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24337627 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24337653 G
1 G
24337654 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24337903 original size:366 final size:354
Alignment explanation
Indices: 24337161--24338130 Score: 1098
Period size: 366 Copynumber: 2.7 Consensus size: 354
24337151 ATCACCCGTT
* * ** * * *
24337161 TGATCCCCGACTTACACATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 TGATCCCAGACTTACGCATTATGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
24337226 TGACTCAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCA
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCA
* * *
24337291 GACCGGAT-TGAAGGTTGTGACAGCAGGATCGGCAGCACGCAGGGGGGACCGAGTTGATCC-CTG
131 GACCGGATCT-AGGGTTGCGACAGCAGGATCGGCAGCACGCA-GGGGGACCGAGCTGATCCTC-G
* * * *** * *
24337354 ACTTGCGCATTCTGCCTCTCTGGCCGACTGAGTGGCCGCACGTTCGTTTCATGGGTTGGCTTAGG
193 ACTTACGCATTCTGCCTCTCCGGCCGGCTGAACAGCCGCACGCTCATTTCATGGGTTGGCTTAGG
* * ** * *
24337419 CATACGGAGTACATTCCATGTCTAAGCCTCAGCCGGACCGAGGGTTGTGGCAGCGAGACCGGTAG
258 CATACGGAGTACATTCCATGTCAAACCCTCAGCCAAACCGAGGGTTGTGGCAGAGAGACCGGTAA
*
24337484 CGGGATCGACAGCACGTAGTGGGGGATCGAGC
323 CGGGATCGACAGCACGTAGAGGGGGATCGAGC
* * * *
24337516 TGATCCCTGACTTGCGCATTATGCCTCTCCAGCCGACCTCTCGGCCGACTGAGCGCCCGCGCGCT
1 TGATCCCAGACTTACGCATTATGCCTCTCC-G--G------C--CAG-CTGAGCGCCCGCACGCT
* *
24337581 CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCT
54 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCT
* * * *
24337646 AGTCTAAGATCAGACCGGATCTAGGGTTGCGGCAGCAGGATCGGTAGCACACAAGGGGACCGAGC
119 AGTCTAAGATCAGACCGGATCTAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGACCGAGC
* * * ** *
24337711 TGATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAACATCCGCACGCTCATTTTGTTGGT
184 TGATCCTCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAACAGCCGCACGCTCATTTCATGGGT
* *
24337776 TGGCTTAGGCATACGGAGTACATTCCATGTCAAATCCCT-AGCCAAACTGAGGGTTGTGGTAGTA
249 TGGCTTAGGCATACGGAGTACATTCCATGTCAAA-CCCTCAGCCAAACCGAGGGTTGTGGCAG-A
* * ** *
24337840 G-GACTGGTAATGGGATCGGTAGCACGTAGAGGGGGAATGGA-C
312 GAGACCGGTAACGGGATCGACAGCACGTAGAGGGGG-ATCGAGC
* * *
24337882 TGATCCACAG-CTTACGCATTATGCCTCTCCGGCCAGCTAAGCGCCCGCACGCTCATTTCATGGG
1 TGATCC-CAGACTTACGCATTATGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGG
24337946 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCT-GTCTAAGAT
65 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATT-CCTAGTCTAAGAT
* * * * *
24338010 CAGACCAGATCGAGAGTTGCGACAGCAGGAT-GAGCAGCATGCAGGGGGACCGAGCCGA-CCTCG
129 CAGACCGGATCTAGGGTTGCGACAGCAGGATCG-GCAGCACGCAGGGGGACCGAGCTGATCCTCG
* * *
24338073 ACTTACGCATTCTGCCTCTCCGACCGGCTG-AGAGCTCGCACGCTCGA-TTCGTGGGTTG
193 ACTTACGCATTCTGCCTCTCCGGCCGGCTGAACAGC-CGCACGCTC-ATTTCATGGGTTG
24338131 AGTTGACATA
Statistics
Matches: 519, Mismatches: 74, Indels: 46
0.81 0.12 0.07
Matches are distributed among these distances:
352 3 0.01
353 51 0.10
354 130 0.25
355 29 0.06
356 1 0.00
357 1 0.00
358 1 0.00
363 1 0.00
365 1 0.00
366 167 0.32
367 133 0.26
368 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (354 bp):
TGATCCCAGACTTACGCATTATGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCA
GACCGGATCTAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGACCGAGCTGATCCTCGACT
TACGCATTCTGCCTCTCCGGCCGGCTGAACAGCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
ACGGAGTACATTCCATGTCAAACCCTCAGCCAAACCGAGGGTTGTGGCAGAGAGACCGGTAACGG
GATCGACAGCACGTAGAGGGGGATCGAGC
Found at i:24337985 original size:26 final size:26
Alignment explanation
Indices: 24337955--24338007 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24337945 GTTGACTTAG
24337955 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
24337981 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24338007 G
1 G
24338008 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24338176 original size:26 final size:26
Alignment explanation
Indices: 24338137--24338188 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24338127 GTTGAGTTGA
*
24338137 CATATGGAGGTCA-TCCCTAGTCTAAG
1 CATACGGAGGTCATTCCC-AGTCTAAG
*
24338163 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGGTCATTCCCAGTCTAAG
24338189 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
CATACGGAGGTCATTCCCAGTCTAAG
Found at i:24338204 original size:181 final size:182
Alignment explanation
Indices: 24337892--24338238 Score: 482
Period size: 181 Copynumber: 1.9 Consensus size: 182
24337882 TGATCCACAG
* * *
24337892 CTTACGCATTATGCCTCTCCGGCCAGCTAAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGC
1 CTTACGCATTATGCCTCTCCGACCAGCTAAGAGCCCGCACGCTCATTTCATGGGTTGACTTAGAC
* * *
24337957 ATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCTGTCTAAGATCAGACCAGATCG
66 ATACGGAGGTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCG
* * *
24338022 AGAGTTGCGACAGCAGGATGAGCAGCATGCAGGGGGACCGAGCCGACCTCGA
131 AGAGTTGCGACAACAGGATCAGCAGCACGCAGGGGGACCGAGCCGACCTCGA
* * * * * *
24338074 CTTACGCATTCTGCCTCTCCGACCGGCTGAGAGCTCGCACGCTCGA-TTCGTGGGTTGAGTT-GA
1 CTTACGCATTATGCCTCTCCGACCAGCTAAGAGCCCGCACGCTC-ATTTCATGGGTTGACTTAGA
* * *
24338137 CATATGGAGGTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC
65 CATACGGAGGTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC
* * *
24338202 GAGGGTTGTGGCAACAGGATCAGCAGCACGCAGGGGG
130 GAGAGTTGCGACAACAGGATCAGCAGCACGCAGGGGG
24338239 GACCAGGCCG
Statistics
Matches: 143, Mismatches: 21, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
181 91 0.64
182 51 0.36
183 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (182 bp):
CTTACGCATTATGCCTCTCCGACCAGCTAAGAGCCCGCACGCTCATTTCATGGGTTGACTTAGAC
ATACGGAGGTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCG
AGAGTTGCGACAACAGGATCAGCAGCACGCAGGGGGACCGAGCCGACCTCGA
Found at i:24338529 original size:25 final size:26
Alignment explanation
Indices: 24338500--24338551 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
24338490 ATGGGTTGAG
24338500 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
24338525 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24338551 G
1 G
24338552 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24338714 original size:26 final size:26
Alignment explanation
Indices: 24338685--24338734 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
24338675 TGACTTAGGC
24338685 ATACGGAGTTCATCCCCAGTCTAAAT
1 ATACGGAGTTCATCCCCAGTCTAAAT
*
24338711 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATCCCCAGTCTAA
24338735 GATCAGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAAT
Found at i:24338745 original size:184 final size:182
Alignment explanation
Indices: 24338454--24338892 Score: 569
Period size: 184 Copynumber: 2.4 Consensus size: 182
24338444 CTTCGACCGG
*
24338454 CCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTG---AGGCATACGGAGTTCATC
1 CCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATC
* * * *
24338516 CCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGATTGAGGGTTGCAGCAGCA
66 CCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCA
* ** * ** *
24338581 GGATCAACAGCACGTAGGGGGGATCAGGCTGATCTTCGACTTTCACATTCTA
131 GGATCAACAGCACGCAGGGCAGATCAGGCCGATCGCCGACTTGCACATTCTA
* *
24338633 CCTCTCCGACCGGTTGAGCGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCAT
* * *
24338698 CCCCAGTCTAAATATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAG
65 -CCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAG
* * * ** *
24338763 CAGGATCAGCAGCACGCAGGGCAGATCGGGCCGATCGCCGGCTTGCGTATTCTT
129 CAGGATCAACAGCACGCAGGGCAGATCAGGCCGATCGCCGACTTGCACATTCTA
** * *
24338817 CCTCTCCGACCGACTGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACAT
1 CCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCAT
*
24338882 TCCATGTCTAA
65 CCCA-GTCTAA
24338893 GCCCCAACCA
Statistics
Matches: 223, Mismatches: 30, Indels: 9
0.85 0.11 0.03
Matches are distributed among these distances:
179 41 0.18
183 20 0.09
184 161 0.72
185 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (182 bp):
CCTCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATC
CCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCA
GGATCAACAGCACGCAGGGCAGATCAGGCCGATCGCCGACTTGCACATTCTA
Found at i:24338777 original size:547 final size:541
Alignment explanation
Indices: 24337551--24339237 Score: 1735
Period size: 547 Copynumber: 3.1 Consensus size: 541
24337541 TCTCCAGCCG
* * * * *
24337551 ACCTCT-CGGCCGACTGAGCGCCCGCGCGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCA
1 ACCTCTCCGACCGGCTGAGAGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCA
* *
24337615 TCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCTAGGGTTGCGGCA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCA
* * * * * * * *
24337680 GCAGGATCGGTAGCACACA-AGGGGACCGAGCTGAT-CCTCGGCTTACGCATTCTGCCTCTCCGG
131 GCAGGATCAGCAGCACGCAGGGGGGACCG-GCCGATCCCT-GGCTTGCGCATTCTACCTCTCCGA
* * * *
24337743 TCGGCTGAACATCCGCACGCTCATTTTGT-TGGTTGGCTTAGGCATACGGAGTACATTCCATGTC
194 TCGGCTGAGC-GCCGCACGTTCATTTCGTGT-GTTGGCTTAGGCATACGGAGTACATTCCATGTC
* * * * * * * * *
24337807 AAATCCCTAGCCA-AACTGAGGGTTGTGGTAGTAGGACTGGTAATGGGATCGGTAGCACGTAGAG
257 TAAGCCCCAG-CAGAAC-GAGGGTTGTGGCAGTAGGACCGGCAGTGGGATCGGCAGCACGCAGAG
* * *
24337871 GGGGA--ATGGACTGATCCACAGCTTACGCATTATGCCTCT--CCGG----CC-A---GCTAAGC
320 GGGGATCA-GG-CTGATCCCCAGCTTGCGCATTATGCCTCTCACCGGCTCTCCGACCGGCTGAGC
* *
24337924 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGG
383 GCCCGCACGCTCGTTTCATGGGTTG---TAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* * * *
24337989 AGTTCATTCCCT-GTCTAAGATCAGACCAGATCGAGAGTTGCGACAGCAGGATGAGCAGCATGCA
445 AGTTCATT-CCTAGTCTAAGATTAGACCAGATCGAGAGTTGCGACAGCAGGATCAACAGCACGCA
* *
24338053 GGGGGACCGAGCCGACCTCGACTTACGCATTCT
509 GGGGGACAGAGCCGACCTCGACTTACACATTCT
* * * * *
24338086 GCCTCTCCGACCGGCTGAGAGCTCGCACGCTCGATTCGTGGGTTGAGTT-GACATATGGAGGTCA
1 ACCTCTCCGACCGGCTGAGAGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCA
* *
24338150 TCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCA
* * * *
24338215 ACAGGATCAGCAGCACGCAGGGGGGACCAGGCCGATCCCTGACTTGTGCATTCTACCTCTCTGAT
131 GCAGGATCAGCAGCACGCAGGGGGGACC-GGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGAT
* *
24338280 TGGCTGAGCGCCAGCACGTTCATTTCGTGTGTTGGCTTAGGCATACGGAGTACATTCCACGTCTA
195 CGGCTGAGCGCC-GCACGTTCATTTCGTGTGTTGGCTTAGGCATACGGAGTACATTCCATGTCTA
* * * * * *
24338345 AGCCCCAGCAGAATCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGTAGGCAGAGTGG
259 AGCCCCAGCAGAA-CGAGGGTTGTGGCAGTAGGACCGGCAGTGGGATCGGCAGCACGCAGAGGGG
* *
24338410 GATCAGGCTAATCCCC-GACTTGCGCATTATGCCTCTTCGACCGGCCTCTCCGACCGGTTGAGCG
323 GATCAGGCTGATCCCCAG-CTTGCGCATTATGCCTC-TC-ACCGG-CTCTCCGACCGGCTGAGCG
24338474 CCCGCACGCTCGTTTCATGGGTTG-AGGCATACGGAGTTCAT-CCCAGTCTAAGCATACGGAGTT
384 CCCGCACGCTCGTTTCATGGGTTGTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * * *
24338537 CATTCCTAGTCTAAGATTAGACCGGATTGAGGGTTGC-AGCAGCAGGATCAACAGCACGTAGGGG
449 CATTCCTAGTCTAAGATTAGACCAGATCGAGAGTTGCGA-CAGCAGGATCAACAGCACGCA-GGG
* * *
24338601 GGATCAG-GCTGATCTTCGACTTTCACATTCT
512 GGA-CAGAGCCGA-CCTCGACTTACACATTCT
* * * *
24338632 ACCTCTCCGACCGGTTGAGCGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 ACCTCTCCGACCGGCTGAGAGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCA
** *
24338697 TCCCCAGTCTAAATATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCA
** * * *
24338762 GCAGGATCAGCAGCACGCAGGGCAGATCGGGCCGATCGCC-GGCTTGCGTATTCTTCCTCTCCGA
131 GCAGGATCAGCAGCACGCAGGGGGGA-CCGGCCGATC-CCTGGCTTGCGCATTCTACCTCTCCGA
* * * *
24338826 CCGACTGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCT
194 TCGGCTGAGCG-CCGCACGTTCATTTCGTGTGTTGGCTTAGGCATACGGAGTACATTCCATGTCT
* * * * * * *
24338891 AAGCCCCAACCAGACCGAGGGTTGTGGCAGTAGGACCAGCAGTAGGATAGGCAACACGCAAAGGG
258 AAGCCCC-AGCAGAACGAGGGTTGTGGCAGTAGGACCGGCAGTGGGATCGGCAGCACGCAGAGGG
* * * * *
24338956 GGATCGGGCTGATCCCCAGCTTGCGCATT-TGCCTCTCCAGCCGGCTTCTTCGGCCGACTGAGCA
322 GGATCAGGCTGATCCCCAGCTTGCGCATTATGCCTCT-CA-CCGGC-TCTCCGACCGGCTGAGCG
* *
24339020 CCCGCATGCTCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC-GA
384 CCCGCACGCTCGTTTCATGGGTT--G-TAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
* * * * * * * * *
24339084 CGTTCATTCCCAATCTAAGATT-GAACC-GAACCAAGGGTCGCGGCAGCAGGATCGATAGCACGC
446 -GTTCATTCCTAGTCTAAGATTAG-ACCAG-ATCGAGAGTTGCGACAGCAGGATCAACAGCACGC
* * * *
24339147 AAGGGGG-CCGAGCCGATCCCCGACTTGCGCATTCT
508 -AGGGGGACAGAGCCGA-CCTCGACTTACACATTCT
* * * * * * ** *
24339182 GCCTCTTCGATCGACTGA-ACGCCCGCACGCTCGTTTCATATGTTCACTTAGGCATA
1 ACCTCTCCGACCGGCTGAGA-GCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
24339238 GCGAGCTCAT
Statistics
Matches: 956, Mismatches: 146, Indels: 85
0.81 0.12 0.07
Matches are distributed among these distances:
535 99 0.10
536 190 0.20
537 9 0.01
538 1 0.00
540 4 0.00
543 4 0.00
544 67 0.07
545 32 0.03
546 106 0.11
547 249 0.26
548 12 0.01
549 31 0.03
550 83 0.09
551 68 0.07
552 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (541 bp):
ACCTCTCCGACCGGCTGAGAGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCA
TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCA
GCAGGATCAGCAGCACGCAGGGGGGACCGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGATC
GGCTGAGCGCCGCACGTTCATTTCGTGTGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAG
CCCCAGCAGAACGAGGGTTGTGGCAGTAGGACCGGCAGTGGGATCGGCAGCACGCAGAGGGGGAT
CAGGCTGATCCCCAGCTTGCGCATTATGCCTCTCACCGGCTCTCCGACCGGCTGAGCGCCCGCAC
GCTCGTTTCATGGGTTGTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCT
AGTCTAAGATTAGACCAGATCGAGAGTTGCGACAGCAGGATCAACAGCACGCAGGGGGACAGAGC
CGACCTCGACTTACACATTCT
Found at i:24339079 original size:26 final size:26
Alignment explanation
Indices: 24339050--24339102 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24339040 GTTGAGTTAG
*
24339050 GCATACGGA-GTTCATCCCCAGTCTAA
1 GCATAC-GACGTTCATCCCCAATCTAA
*
24339076 GCATACGACGTTCATTCCCAATCTAA
1 GCATACGACGTTCATCCCCAATCTAA
24339102 G
1 G
24339103 ATTGAACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGACGTTCATCCCCAATCTAA
Found at i:24340142 original size:171 final size:170
Alignment explanation
Indices: 24339848--24340253 Score: 467
Period size: 171 Copynumber: 2.4 Consensus size: 170
24339838 TCGAGGGTTG
* * * * *** * *
24339848 CGGCAGTA-GGATCGACAGCACGTAG-GAGGGATCGGGCCGATCCTCGACTTGTGCATTCTACCT
1 CGGCAG-AGGGATCGACAGCACGTAGAGAGGGATCGAGCTGATCCCCGGCTTACACATTATGCCT
* * * * * * * * *
24339911 TTTCGGTCGGCTGGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCA
65 CTTCGATTGGCTGGCGCCCGCAAGCTCGTTCCATAGGTTGACTTAGGCATACAGAGTACATTCCA
* *
24339976 CATCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAAGAC
130 CATCTAAGCCCCAATCGGATCGAGGGTTATGGCAGCAAGAC
* * * * * *
24340017 CGGTAGAGGGATCGACATCACGTAGA-AGGGGATCGAGTTGATCCCTGGCTTGCGCATTATGCCT
1 CGGCAGAGGGATCGACAGCACGTAGAGA-GGGATCGAGCTGATCCCCGGCTTACACATTATGCCT
*
24340081 CTTCGATTGGCTGAGCGCCCGCAAGCTCGTTCCATAGGTTGACTTAGGCATACATAGTACATTCC
65 CTTCGATTGGCTG-GCGCCCGCAAGCTCGTTCCATAGGTTGACTTAGGCATACAGAGTACATTCC
** *
24340146 ATGTCTAAGCCCCAATCGGATCGAGGGTTATGGCAGCATGAC
129 ACATCTAAGCCCCAATCGGATCGAGGGTTATGGCAGCAAGAC
* * *
24340188 CGGCAGAGGGATTGACAGCACGTAGAGAGGGATCGGGCTGATCCCCGGCTTACATATTATGCCTC
1 CGGCAGAGGGATCGACAGCACGTAGAGAGGGATCGAGCTGATCCCCGGCTTACACATTATGCCTC
24340253 T
66 T
24340254 CCTATCGGTT
Statistics
Matches: 197, Mismatches: 35, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
168 1 0.01
169 22 0.11
170 37 0.19
171 136 0.69
172 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.23
Consensus pattern (170 bp):
CGGCAGAGGGATCGACAGCACGTAGAGAGGGATCGAGCTGATCCCCGGCTTACACATTATGCCTC
TTCGATTGGCTGGCGCCCGCAAGCTCGTTCCATAGGTTGACTTAGGCATACAGAGTACATTCCAC
ATCTAAGCCCCAATCGGATCGAGGGTTATGGCAGCAAGAC
Found at i:24340325 original size:171 final size:171
Alignment explanation
Indices: 24339917--24340325 Score: 484
Period size: 171 Copynumber: 2.4 Consensus size: 171
24339907 ACCTTTTCGG
* * *
24339917 TCGGCTG-GCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACA-TC
1 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTACA-TCCCCAGTC
* * * *
24339980 TAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAAGACCGGTAGAGGGATCGACATCACGTAGAAG
65 TAAGCCCCAATCGGATCGAGGGTTATGGCAGCAAGACCGGCAGAGGGATCGACAGCACGTAGAAG
* * * * *
24340045 GGGATCGAGTTGATCCCTGGCTTGCGCATTATGCCTCTTCGA
130 GGGATCGAGCTGATCCCCGGCTTACACATTATGCCTCTCCGA
* * * * * * *
24340087 TTGGCTGAGCGCCCGCAAGCTCGTTCCATAGGTTGACTTAGGCATACATAGTACAT-TCCATGTC
1 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTACATCCCCA-GTC
* *
24340151 TAAGCCCCAATCGGATCGAGGGTTATGGCAGCATGACCGGCAGAGGGATTGACAGCACGTAG-AG
65 TAAGCCCCAATCGGATCGAGGGTTATGGCAGCAAGACCGGCAGAGGGATCGACAGCACGTAGAAG
* * *
24340215 AGGGATCGGGCTGATCCCCGGCTTACATATTATGCCTCTCCTA
130 -GGGATCGAGCTGATCCCCGGCTTACACATTATGCCTCTCCGA
* * * * * * *
24340258 TCGGTTGAGTGTCGGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
1 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTACATCCCCAGTCT
24340323 AAG
66 AAG
24340326 ATCAGACCGA
Statistics
Matches: 196, Mismatches: 38, Indels: 9
0.81 0.16 0.04
Matches are distributed among these distances:
169 2 0.01
170 9 0.05
171 182 0.93
172 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (171 bp):
TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTACATCCCCAGTCT
AAGCCCCAATCGGATCGAGGGTTATGGCAGCAAGACCGGCAGAGGGATCGACAGCACGTAGAAGG
GGATCGAGCTGATCCCCGGCTTACACATTATGCCTCTCCGA
Found at i:24340675 original size:26 final size:26
Alignment explanation
Indices: 24340639--24340691 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24340629 GTAAACTTAG
* *
24340639 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24340665 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24340691 G
1 G
24340692 ACCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24341329 original size:159 final size:160
Alignment explanation
Indices: 24341021--24341526 Score: 429
Period size: 159 Copynumber: 3.2 Consensus size: 160
24341011 CCTAGTCTAA
* * * * * * * *
24341021 GCATACGGAGTTGATTCCCA-ATCTCAG-ATCGGATCAGACCGAGGGTTGCGGCAGTAAGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGA
* * * * * * * * * * *
24341084 CACCACGCA-AGGTGGATC-GGGCTGATCCCCGGCTTGTGA-ATTCTGCCTCTTCGACCAGCTGA
65 CAGCACACAGAGGGGGACCAGGTC-AATCCCCGGCTTG-CACATTATGCCTCTCCGATCAGCTCA
* * * *
24341146 GCTCCCGGACGCCCGTTTCGTGGGTTGGCTTAG
128 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * *
24341179 GCATAGGGAGCTCATTCCATCTCTAAGCCTCAG-TCAGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGAC
** * ** * * *
24341243 AGCACGTAGAGGGGGATC-GAGTCGGTCCCCGGCTTGCGCATTATGCCTCTTCGGTC-GACTCAG
66 AGCACACAGAGGGGGACCAG-GTCAATCCCCGGCTTGCACATTATGCCTCTCCGATCAG-CTCAG
* * * *
24341306 TGCCTGCACGCTCGTTTCATGGGTTGACTTAT
129 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * *
24341338 GCATACAGAGTTCATTCC-TAGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCTA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGA
* * *
24341401 CAGCACACAGGGGGGGACCAGGTCAATCCCCGGCTTGCACATTCTGCCTCTCCGATCAGCTGAGC
65 CAGCACACAGAGGGGGACCAGGTCAATCCCCGGCTTGCACATTATGCCTCTCCGATCAGCTCAGC
* *
24341466 GCCCGCATGCTCCTTTCATGGGTTGGCTTAG
130 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
24341497 GCATACGGAGTTCATTCCATGTCTAAGCAT
1 GCATACGGAGTTCATTCCATGTCTAAGCAT
24341527 ACGGAGCTCA
Statistics
Matches: 276, Mismatches: 60, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 56 0.20
159 210 0.76
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCAGACCGAGGGTTGCGGCAGCAGGACCGAC
AGCACACAGAGGGGGACCAGGTCAATCCCCGGCTTGCACATTATGCCTCTCCGATCAGCTCAGCG
CCCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:24341547 original size:26 final size:26
Alignment explanation
Indices: 24341497--24341549 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24341487 GTTGGCTTAG
* *
24341497 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24341523 GCATACGGAGCTCATTCACA-ATCTAA
1 GCATACGGAGCTCATTC-CATATCTAA
24341549 G
1 G
24341550 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24342616 original size:26 final size:26
Alignment explanation
Indices: 24342586--24342638 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24342576 GTTGACATAG
24342586 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24342612 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24342638 G
1 G
24342639 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24342957 original size:26 final size:26
Alignment explanation
Indices: 24342923--24342979 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
24342913 TGGGTTGACT
24342923 TAAGAATACGGAATTCATCCCCAGTC
1 TAAGAATACGGAATTCATCCCCAGTC
* * *
24342949 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGAATACGGAATTCATCCCCAGTC
24342975 TAAGA
1 TAAGA
24342980 TCAGAATGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGAATACGGAATTCATCCCCAGTC
Found at i:24343446 original size:158 final size:159
Alignment explanation
Indices: 24343177--24343464 Score: 366
Period size: 158 Copynumber: 1.8 Consensus size: 159
24343167 TGTGGTAACG
* * * * *
24343177 GGATCGGCAGCACGTAGAGGGTGACCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTTCGGCTG
1 GGATCGACAGCACGTAGAGGGGGACCGGGCCAATCCCCAGCTTACGCATTATGCCTCTCCGGCCG
* *
24343242 GCTCAGCACCCGCAAGCTTATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAA
66 GCTCAGCACCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAA
24343306 GATCGAACTGGACCGAGGGTTGCAGTTGCA
130 GATCGAACTGGACCGAGGGTTGCAGTTGCA
* * * * *
24343336 GGATCGACAGCACGTAG-GGGGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGGCCG
1 GGATCGACAGCACGTAGAGGGGGACCGGGCCAATCCCCAGCTTACGCATTATGCCTCTCCGGCCG
* * ** * * *
24343400 GTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCCA-ACGGAGTTCATTCCATGTCTAA
66 GCTCAGCACCCGCAAGCTCATTTCGTGGGTTGACTTAGG-CATACGGAGTTCATTCCATGTCTAA
24343464 G
130 G
24343465 CATACAGAGC
Statistics
Matches: 108, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
157 3 0.03
158 87 0.81
159 18 0.17
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (159 bp):
GGATCGACAGCACGTAGAGGGGGACCGGGCCAATCCCCAGCTTACGCATTATGCCTCTCCGGCCG
GCTCAGCACCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
ATCGAACTGGACCGAGGGTTGCAGTTGCA
Found at i:24343582 original size:11 final size:11
Alignment explanation
Indices: 24343566--24343592 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
24343556 GCACCATTGC
24343566 CGGAGCATCGT
1 CGGAGCATCGT
24343577 CGGAGCATCGT
1 CGGAGCATCGT
24343588 CGGAG
1 CGGAG
24343593 AGCCTAACCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.26, G:0.41, T:0.15
Consensus pattern (11 bp):
CGGAGCATCGT
Done.