Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 245 of 402
Found at i:24344201 original size:26 final size:26
Alignment explanation
Indices: 24344171--24344223 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24344161 GTTGACTTAG
*
24344171 GCATACGGGGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
24344197 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24344223 G
1 G
24344224 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24344555 original size:26 final size:26
Alignment explanation
Indices: 24344526--24344578 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24344516 GTTGACTTAG
24344526 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
24344552 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
24344578 G
1 G
24344579 ATCAGACAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:24344777 original size:355 final size:350
Alignment explanation
Indices: 24344099--24345143 Score: 1204
Period size: 355 Copynumber: 2.9 Consensus size: 350
24344089 CCACCCGTTC
* * ** ** *
24344099 GATCCCCGACTTACTCATCCTGCCTCTCTGGTCGACTGAGCGCCCGTACGCTCGTTTCATGGGTT
1 GATCTCCGACTTACGCATTATGCCTCTCCAGTCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTT
*
24344164 GACTTAGGCATACGGGGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGG
66 GACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGG
* **
24344229 ACCGAATTGAAGGTTGCAACAGCAGGATCGACAGCACACAGGGGGGACCAGGCCGATCCCTGACT
131 A-CGAATTGAGGGTTG-TGCAGCAGGATCGACAGCACACAGGGGGGACC-GGCCGATCCC-GACT
* * ** * **
24344294 TGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTTGTTTCATTTGTTGGCTTAGGCAT
192 TGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCAT
* * * *
24344359 ATGGAGTACATTCCATGTCTAAGCCCCAATCGGACTGAGGGTTGTGGCAGCAGGACTGGTAGCGA
257 ACGGAGTACATTCCATGTCTAAGCCCCAGTCGGAC-GAGGGTTATGGCAGCAGGACCGGTAGCGA
* * *
24344424 GATTGACAGCACGTAGAGGGGGATCGAGCT
321 GATCGACAGCACGGAAAGGGGGATCGAGCT
* *
24344454 GATC-CCGGGCTTACGCATTATGCCTCTCCAGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGT
1 GATCTCC-GACTTACGCATTATGCCTCTCCAGTCGGCTGAGCGCCCGTACGCTCGTTTCATGGGT
* * **
24344518 TGACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCA
65 TGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTG
* * * * *
24344583 GACAGGATCGAGGGTTGTGGCAGCGGGATCGACAGCACATAGGGGGGATCGGACCGATCCTCGAC
130 GAC-GAATTGAGGGTTGT-GCAGCAGGATCGACAGCACACAGGGGGGACCGG-CCGATCC-CGAC
* * * * *
24344648 TTACGCATTCTGCCTCTTCGGTCGGCTGAGTGCCTGCACGCCCGTTTTGTGGGTTAGG-TTAGGC
191 TTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCACGCCCGTTTCGTGGGTT-GGCTTAGGC
24344712 ATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGATCG-GGTGTTATGGCAGCAGGACCGGTAG
255 ATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGA-CGAGG-GTTATGGCAGCAGGACCGGTAG
* *
24344776 CGAGATCGACAGCATGGAAAGGGGGATCGGGCT
318 CGAGATCGACAGCACGGAAAGGGGGATCGAGCT
* * * *
24344809 GATCTTCGACTTATGCATTATGCCTCTCCGACTGGCCTCTCCGGTCGGCTGAGCGCCTGCACGCT
1 GATCTCCGACTTACGCATTATGCCTCTCC-A------------GTCGGCTGAGCGCCCGTACGCT
* *
24344874 CGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
53 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCC
* *
24344939 AGTCTAAGATTGGATCGAATTGAGGGTTGCTGCAGTAGGATCGACAGCACGC-GAGGGGGACCGG
118 AGTCTAAGATTGGA-CGAATTGAGGGTTG-TGCAGCAGGATCGACAGCACACAG-GGGGGACC-G
* * * * *
24345003 GCTGATCCCCGGCTTGCGTATTTTGCCTCTCCGATCGGCTGAGCT-CCCGCACGCCCATTTCGTG
179 GCCGAT-CCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAG-TGCCCGCACGCCCGTTTCGTG
* * *
24345067 GGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCA
242 GGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAGTCGGA-CGAGGGTTATGGCA
24345131 GC-GGACCGGTAGC
305 GCAGGACCGGTAGC
24345144 ACACAGAGGG
Statistics
Matches: 584, Mismatches: 75, Indels: 50
0.82 0.11 0.07
Matches are distributed among these distances:
354 7 0.01
355 318 0.54
356 6 0.01
367 14 0.02
368 229 0.39
369 10 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (350 bp):
GATCTCCGACTTACGCATTATGCCTCTCCAGTCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGG
ACGAATTGAGGGTTGTGCAGCAGGATCGACAGCACACAGGGGGGACCGGCCGATCCCGACTTGCG
CATTCTGCCTCTCCGATCGGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGG
AGTACATTCCATGTCTAAGCCCCAGTCGGACGAGGGTTATGGCAGCAGGACCGGTAGCGAGATCG
ACAGCACGGAAAGGGGGATCGAGCT
Found at i:24344930 original size:26 final size:26
Alignment explanation
Indices: 24344894--24344946 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24344884 GTTGACTTAG
24344894 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24344920 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24344946 G
1 G
24344947 ATTGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24346167 original size:26 final size:26
Alignment explanation
Indices: 24346131--24346183 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24346121 GTTAACTTAG
*
24346131 GCATATGGAGTTCAACCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
***
24346157 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
24346183 G
1 G
24346184 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:24346528 original size:26 final size:26
Alignment explanation
Indices: 24346499--24346550 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24346489 GTTGACTTAG
*
24346499 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24346525 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24346551 CATCAAACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24347441 original size:26 final size:26
Alignment explanation
Indices: 24347405--24347457 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24347395 GTTGACTTAG
*
24347405 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
**
24347431 GCATAAGGAGTTCATTTCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
24347457 G
1 G
24347458 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:24347810 original size:26 final size:26
Alignment explanation
Indices: 24347774--24347824 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24347764 TGACTGAGGG
24347774 ATACGGAGTTCA-TCCCAAGTCTAAGC
1 ATACGGAGTTCATTCCC-AGTCTAAGC
24347800 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
24347825 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:24348098 original size:159 final size:159
Alignment explanation
Indices: 24347798--24348265 Score: 442
Period size: 159 Copynumber: 3.0 Consensus size: 159
24347788 CCAAGTCTAA
* * * * * * *
24347798 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGTAGGATCGACA
1 GCATAGGGAGCTCATTCCCAGTCTAAGACCAGATCGGACCAAGGGTTGCGGCAGCAGGACCGACA
* * * * * * * *** * * *
24347863 GCACGC-AGG-GGGACCAGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCTGGCCTACTGAGCGG
66 GCACACAAGGAGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTCAGTGC
** * *
24347926 CCGCTTGCCCGTTTCGTGGGTTGGCTTAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
24347955 GCATAGGGAGCTCATT-CCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGCAGGACCGA
1 GCATAGGGAGCTCATTCCCA-GTCTAAG-ACCAGATCGGACCAAGGGTTGCGGCAGCAGGACCGA
* * *
24348018 GAGCACACAGAGG-GGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGTTCAG
64 CAGCACACA-AGGAGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTCAG
* *
24348082 TGCCTGCACGCTCGTTTCGTGGGTTGACTTAT
128 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
24348114 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGTAGCAGGATCGACA
1 GCATAGGGAGCTCATTCCCAGTCTAAGACCAGATCGGACCAAGGGTTGCGGCAGCAGGACCGACA
* * ** * * *
24348179 GCACGCAAGGAGTGACCGGGTTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCTGTTGAGTGC
66 GCACACAAGGAGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTCAGTGC
* *
24348244 CCGTATGCTCGTTTCGTGGGTT
131 CCGCACGCTCGTTTCGTGGGTT
24348266 CGTATGCTTG
Statistics
Matches: 250, Mismatches: 54, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
156 3 0.01
157 50 0.20
158 8 0.03
159 186 0.74
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (159 bp):
GCATAGGGAGCTCATTCCCAGTCTAAGACCAGATCGGACCAAGGGTTGCGGCAGCAGGACCGACA
GCACACAAGGAGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGTTCAGTGC
CCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:24348271 original size:21 final size:21
Alignment explanation
Indices: 24348245--24348286 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
24348235 GTTGAGTGCC
*
24348245 CGTATGCTCGTTTCGTGGGTT
1 CGTATGCTCGTTTCATGGGTT
*
24348266 CGTATGCTTGTTTCATGGGTT
1 CGTATGCTCGTTTCATGGGTT
24348287 GGCTTAGGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.17, G:0.31, T:0.45
Consensus pattern (21 bp):
CGTATGCTCGTTTCATGGGTT
Found at i:24348324 original size:26 final size:26
Alignment explanation
Indices: 24348294--24348346 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24348284 GTTGGCTTAG
*
24348294 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
24348320 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
24348346 G
1 G
24348347 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:24349052 original size:26 final size:26
Alignment explanation
Indices: 24349014--24349066 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24349004 GTTGACTTAG
* *
24349014 GCATATGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24349040 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24349066 G
1 G
24349067 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24349432 original size:26 final size:26
Alignment explanation
Indices: 24349382--24349434 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24349372 GTTGACTTGG
* *
24349382 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
* *
24349408 GCATAAGGAGTTCATTCTCAATCTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
24349434 G
1 G
24349435 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAATCTAA
Found at i:24349865 original size:158 final size:158
Alignment explanation
Indices: 24349459--24349909 Score: 426
Period size: 159 Copynumber: 2.8 Consensus size: 158
24349449 AGGGTTGCCA
* * * *
24349459 CAGTAGGATTGGCAGCACGCAGGGGGGATCGGG-CTGATCCCCGGCTTGCGCATTCTGCCTCTCC
1 CAGTAGGATTGACAGCACGTAAGGGGGATCGGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCT
* * * * * *
24349523 GACC-AGCTGAGTGCCCGCATGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATG
65 GGCCGA-CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
** * * * **
24349587 TCTAAGCCCCACCCGGACTGAGGGTTGTGG
129 TCTAAGAACCAACCAGACCGAGGGTTACGG
* * * * * * * ** * *
24349617 CAGCAAGACTGACAGTACATAGAGGGGGATCGGGTTGATGCTTGGCTTACGCATTATGCCTCT-T
1 CAGTAGGATTGACAGCACGTA-AGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCT
* * ** * * * * *
24349681 CGGTCGGCTGAGCACCCGCACACTCGTTTCATGAGTTGACTTATGCATACGGAGTTCATTTCCA-
65 -GGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TTCCAT
** *
24349745 GTCTAA-AATTAGACCAGACCGAGGGTTACGT
128 GTCTAAGAACCA-ACCAGACCGAGGGTTACGG
*
24349776 CAGTAGGATTGACAGCACGTAAGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTG
1 CAGTAGGATTGACAGCACGTAAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTG
* *
24349841 GCCGACTGAGTGCCCTCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTC
66 GCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
24349906 TAAG
131 TAAG
24349910 CCTCAGCCGG
Statistics
Matches: 221, Mismatches: 63, Indels: 17
0.73 0.21 0.06
Matches are distributed among these distances:
157 5 0.02
158 101 0.46
159 110 0.50
160 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
CAGTAGGATTGACAGCACGTAAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTG
GCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGAACCAACCAGACCGAGGGTTACGG
Found at i:24349938 original size:158 final size:157
Alignment explanation
Indices: 24349446--24349941 Score: 471
Period size: 158 Copynumber: 3.1 Consensus size: 157
24349436 TCAGACTGGG
** * * *
24349446 CTGAGGGTTGCCACAGTAGGATTGGCAGCACGCAGGGGGGATCGGG-CTGATCCCCGGCTTGCGC
1 CTGAGGGTTGTGACAGTAGGATTGACAGCACGTAAGGGGGATCGGGTC-GATCCCCGGCTTGCGC
* * * * * *
24349510 ATTCTGCCTCTCCGACC-AGCTGAGTGCCCGCATGCCCGTTTTGTGGGTTGGCTTAGGCATAGGG
65 ATTCTGCCTCTCTGGCCGA-CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* *
24349574 AGCTCATTCCATGTCTAAGCCCCACCCGGA
129 AG-TCATTCCATGTCTAAGCCTCAGCCGGA
* * * * * * * * ** *
24349604 CTGAGGGTTGTGGCAGCAAGACTGACAGTACATAGAGGGGGATCGGGTTGATGCTTGGCTTACGC
1 CTGAGGGTTGTGACAGTAGGATTGACAGCACGTA-AGGGGGATCGGGTCGATCCCCGGCTTGCGC
* * * ** * * * * *
24349669 ATTATGCCTCT-TCGGTCGGCTGAGCACCCGCACACTCGTTTCATGAGTTGACTTATGCATACGG
65 ATTCTGCCTCTCT-GGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
** * *
24349733 AGTTCATTTCCA-GTCTAA-AATTAGACCAGA
129 AG-TCA-TTCCATGTCTAAGCCTCAG-CCGGA
* ** * *
24349763 CCGAGGGTTACGTCAGTAGGATTGACAGCACGTAAGGGGGATCGGGTCGATCCCCGACTTGCGCA
1 CTGAGGGTTGTGACAGTAGGATTGACAGCACGTAAGGGGGATCGGGTCGATCCCCGGCTTGCGCA
*
24349828 TTCTGCCTCTCTGGCCGACTGAGTGCCCTCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
66 TTCTGCCTCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
24349893 TACATTCCATGTCTAAGCCTCAGCCGGA
131 T-CATTCCATGTCTAAGCCTCAGCCGGA
*
24349921 CTGAAGGTTGTGACAGTAGGA
1 CTGAGGGTTGTGACAGTAGGA
24349942 CCGACAGTGG
Statistics
Matches: 254, Mismatches: 74, Indels: 20
0.73 0.21 0.06
Matches are distributed among these distances:
157 6 0.02
158 130 0.51
159 113 0.44
160 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
CTGAGGGTTGTGACAGTAGGATTGACAGCACGTAAGGGGGATCGGGTCGATCCCCGGCTTGCGCA
TTCTGCCTCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
TCATTCCATGTCTAAGCCTCAGCCGGA
Found at i:24350358 original size:686 final size:686
Alignment explanation
Indices: 24349040--24350596 Score: 1857
Period size: 686 Copynumber: 2.3 Consensus size: 686
24349030 CCCAGTCTAA
* * *
24349040 GCATACGGAGTTCATTCCCAGTCTAAGA-TCGAACCGGATCGAGGGTTGCAG-CAGTAGGAATGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCGGATCGAGGGTTGCAGTCAGTAGGATTGA
* * * * ** * *
24349103 CTA-CACGCAGGGGGGATCAGGCCGAT-CCTTAGCTTGCACATTCTGCCTCTCCGGTCGGTTGAG
65 C-AGCACGTAAGGGGGATCGGGTCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
24349166 CGCCC-CTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCA
128 CGCCCTC-ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCA
* * * * *
24349230 GCTAGACCGAGGGTTGTGGCAGCAAAATCGGCAGCGGGATCAACAGCACGTAGAAGGGGATCGGA
192 GCCAGACCGAAGGTTGTGACAGCAAAACCGACAGCGGGATCAACAGCACGTAGAAGGGGATCGGA
** * * *
24349295 CAGATCCCCGACTTGCGTATTATGCCTCTCTGGCCAGCCTCTTCAGCCGGCTAAGCACCCGAACG
257 CAGATCCCCGACTTGCACATTATGCCTCTCTCGACAGCCTCTTCAGCCAGCTAAGCACCCGAACG
* *
24349360 CTCGTTTCATGGGTTGACTTGGGCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTC
322 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAACATAAGGAGTTCATTC
* * * * * * * * * *
24349425 TCAATCTAAGATCAGACTGGGCTGAGGGTTGCCACAGTAGGATTGGCAGCACGCAGGGGGGATCG
387 CCAATCTAAAATCAGACCGAGCTGAGGGCTGCCACAGCAGGATCGACAGCACGCAGGAGGGACCG
* * * * * *
24349490 GGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGTGCCCGCATGCCCGTTTTGTG
452 GGCCGATCCCCGACTTGCGCATTCAGCCTCTCCGACCAGCTGAGTACCCGCATGCCCATTTCGTG
* *
24349555 GGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCACCCGGACTGAGGGTTGTGGCAG
517 GGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCACCCAGACCGAGGGTTGTGGCAG
** * * * * *
24349620 CAAGACTGACAGTACATAGAGGGGGATCGGGTTGATGCTTGGCTTACGCATTATGCCTCTTCGGT
582 CAAGACTGACAACACACAGAGGGGGATCGGGTCGATCCTCGGCTTACGCATTATGCCGCTTCGGT
*
24349685 CGGCTGAGCACCCGCACACTCGTTTCATGAGTTGACTTAT
647 CGGCTCAGCACCCGCACACTCGTTTCATGAGTTGACTTAT
* * * * *
24349725 GCATACGGAGTTCATTTCCAGTCTAAAATTAGACCAGACCGAGGGTTAC-GTCAGTAGGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTGCAGTCAGTAGGATTGAC
* * * *
24349789 AGCACGTAAGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGACTGAGTGC
66 AGCACGTAAGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
24349854 CCTCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCTCAGCCG
131 CCTCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCA
* * ** * * * *
24349919 GACTGAAGGTTGTGACAGTAGGACCGACAGTGGGATCGACAGCACGTAG-AGGAGGATCGGGCTG
196 GACCGAAGGTTGTGACAGCAAAACCGACAGCGGGATCAACAGCACGTAGAAGG-GGATCGGACAG
* ** * * *
24349983 ATCCCCTGGCTTGCACATTATGCCTCTC-CGACAGACCTCTTTGGCCAGCTGAGCGCCCGTACGC
260 ATCCCC-GACTTGCACATTATGCCTCTCTCGACAG-CCTCTTCAGCCAGCTAAGCACCCGAACGC
* ** *
24350047 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTTTAAATGTATGGAGTTCATTCC
323 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAACATAAGGAGTTCATTCC
*
24350112 CAATCTAAAATC-GAACCGA-ATCGAGGGCTG-CAGCAGCAGGATCGACAGCACGCAGGAGGGAC
388 CAATCTAAAATCAG-ACCGAGCT-GAGGGCTGCCA-CAGCAGGATCGACAGCACGCAGGAGGGAC
* ** *
24350174 CGGGCCGATCCCTGACTTGCGCATTCAGCCTCTCCGGTCAGCTGAGTACCCGCATGCTCATTTCG
450 CGGGCCGATCCCCGACTTGCGCATTCAGCCTCTCCGACCAGCTGAGTACCCGCATGCCCATTTCG
*
24350239 TGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC
515 TGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCACCCAGACCGAGGGTTGTGGC
* * * * * *
24350304 AGCGAGA-TGGGCAACACGCAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGTCGCTTT
580 AGCAAGACT-GACAACACACAGAGGGGGATCGGGTCGATCCTCGGCTTACGCATTATGCCGCTTC
* * * * * *
24350368 GGTCGGTTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAT
644 GGTCGGCTCAGCACCCGCACACTCGTTTCATGAGTTGACTTAT
* * * * * * ** ** *
24350411 GCATACAGAGTTCATTCCCAATCTAAGATCAGATCGGATTGAGGGTTGCAGT-AGCAAAATCAAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTGCAGTCAGTAGGATTGAC
* * * * *
24350475 GGCACGT-AGGAGGGATCGGGTTGATCTCCGACTTGCGCATTCTGACTCTCCGATCGGCTGAGCG
66 AGCACGTAAGG-GGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * *
24350539 -CCTACACGCTCGTTTTGTGGGTTGGCTTAGTCATACGGAGTTCATTCCATGTCTAAGC
130 CCCT-CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGC
24350597 ATACAGAGCT
Statistics
Matches: 733, Mismatches: 124, Indels: 29
0.83 0.14 0.03
Matches are distributed among these distances:
684 5 0.01
685 227 0.31
686 499 0.68
687 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (686 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTGCAGTCAGTAGGATTGAC
AGCACGTAAGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
CCTCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCA
GACCGAAGGTTGTGACAGCAAAACCGACAGCGGGATCAACAGCACGTAGAAGGGGATCGGACAGA
TCCCCGACTTGCACATTATGCCTCTCTCGACAGCCTCTTCAGCCAGCTAAGCACCCGAACGCTCG
TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAACATAAGGAGTTCATTCCCAA
TCTAAAATCAGACCGAGCTGAGGGCTGCCACAGCAGGATCGACAGCACGCAGGAGGGACCGGGCC
GATCCCCGACTTGCGCATTCAGCCTCTCCGACCAGCTGAGTACCCGCATGCCCATTTCGTGGGTT
GGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCACCCAGACCGAGGGTTGTGGCAGCAAG
ACTGACAACACACAGAGGGGGATCGGGTCGATCCTCGGCTTACGCATTATGCCGCTTCGGTCGGC
TCAGCACCCGCACACTCGTTTCATGAGTTGACTTAT
Found at i:24350609 original size:26 final size:26
Alignment explanation
Indices: 24350570--24350621 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24350560 TTGGCTTAGT
* *
24350570 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACAGAGCTCATTCCCA-GTCTAAG
24350596 CATACAGAGCTCATTCCCAGTCTAAG
1 CATACAGAGCTCATTCCCAGTCTAAG
24350622 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACAGAGCTCATTCCCAGTCTAAG
Found at i:24354262 original size:26 final size:26
Alignment explanation
Indices: 24354212--24354264 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24354202 GTTGACTTAG
* * *
24354212 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCACCAATCTAA
*
24354238 GCATACGGAGTTCATTACCAATCTAA
1 GCATACGGAGTTCATCACCAATCTAA
24354264 G
1 G
24354265 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAATCTAA
Found at i:24354612 original size:26 final size:26
Alignment explanation
Indices: 24354578--24354627 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
24354568 AACTTAGGCA
*
24354578 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGAAGTTCATCCCCAGTCTAAGCG
*
24354604 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATCCCCAGTCTAAG
24354628 ATCGAATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAGTCTAAGCG
Found at i:24354922 original size:159 final size:159
Alignment explanation
Indices: 24354741--24355106 Score: 436
Period size: 160 Copynumber: 2.3 Consensus size: 159
24354731 CATAATCCCA
* * **
24354741 TTTCATGGGTTGGCTTAGGCATA-AGGAGCTCATTCCATGTCTAAGCCCTACCTGGACTGAGGGT
1 TTTCATGGGTTGGCTTAGGCATACA-GAGCTCATTCCATGTCTAAGCACGACC-AAACTGAGGGT
* * * *
24354805 TGTGGCAGCGGGA-CTGGCAGCATGCA-GAGGGGGACCGGGTCGATCCCCGTCTTGCACATTATA
64 TGCGGCAGCAGGATC-GACAGCATGCAGGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTATA
* *
24354868 CCTTTTCGACC-AGCTCAGCGCCAGCACGCTCG
128 CCTCTCCGACCGA-CTCAGCGCCAGCACGCTCG
* * * *
24354900 TTTCATGGGTTGACTTATGCATACAGAGCTCATTCCCA-GTCTAAGATAGGACCAAACTGAGGGT
1 TTTCATGGGTTGGCTTAGGCATACAGAGCTCATT-CCATGTCTAAG-CACGACCAAACTGAGGGT
* * * * *
24354964 TGCGGTAGCAGGATCGACAGCATGCAGGGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTAC
64 TGCGGCAGCAGGATCGACAGCATGCAGGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTATAC
* *
24355029 CTCTCCGACCGACTGAGCGCCCGCACGCTCG
129 CTCTCCGACCGACTCAGCGCCAGCACGCTCG
* *
24355060 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
1 TTTCATGGGTTGGCTTAGGCATACAGAGCTCATTCCATGTCTAAGCA
24355107 TATGGAGCTC
Statistics
Matches: 174, Mismatches: 26, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
159 70 0.40
160 103 0.59
161 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
TTTCATGGGTTGGCTTAGGCATACAGAGCTCATTCCATGTCTAAGCACGACCAAACTGAGGGTTG
CGGCAGCAGGATCGACAGCATGCAGGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTATACCT
CTCCGACCGACTCAGCGCCAGCACGCTCG
Found at i:24355087 original size:160 final size:159
Alignment explanation
Indices: 24354641--24355106 Score: 487
Period size: 159 Copynumber: 2.9 Consensus size: 159
24354631 GAATCGGATC
* * * *
24354641 GAGGGTTGCGGCAGCAGGATTGGCAGCACGCA-GGGGGGACCGGGCCGATCCCCGGCTTGTGCAT
1 GAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCAT
** ** ** ** * *
24354705 TC-AGCCTCTTCGGTCGACTGAATGCCCATAATCCCATTTCATGGGTTGGCTTAGGCATA-AGGA
66 TCTA-CCTCTTCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACA-GA
* * **
24354768 GCTCATTCCATGTCTAAGCCCTACCTGGACT
129 GCTCATTCCATGTCTAAGCACGACCTAAACT
* * * * *
24354799 GAGGGTTGTGGCAGCGGGA-CTGGCAGCATGCAGAGGGGGACCGGGTCGATCCCCGTCTTGCACA
1 GAGGGTTGCGGCAGCAGGATC-GGCAGCATGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCA
* * * * * *
24354863 TTATACCTTTTCGACC-AGCTCAGCGCCAGCACGCTCGTTTCATGGGTTGACTTATGCATACAGA
65 TTCTACCTCTTCGACCGA-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGA
* *
24354927 GCTCATTCCCA-GTCTAAGATAGGACC-AAACT
129 GCTCATT-CCATGTCTAAG-CACGACCTAAACT
* * *
24354958 GAGGGTTGCGGTAGCAGGATCGACAGCATGCAGGGGGGGGATCGGGTCGATCCCCGGCTTGCGCA
1 GAGGGTTGCGGCAGCAGGATCGGCAGCATGCA-GGGGGGGACCGGGTCGATCCCCGGCTTGCGCA
* *
24355023 TTCTACCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAG
65 TTCTACCTCTTCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAG
*
24355088 TTCATTCCATGTCTAAGCA
130 CTCATTCCATGTCTAAGCA
24355107 TATGGAGCTC
Statistics
Matches: 248, Mismatches: 49, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
158 28 0.11
159 115 0.46
160 104 0.42
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GAGGGTTGCGGCAGCAGGATCGGCAGCATGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCAT
TCTACCTCTTCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGC
TCATTCCATGTCTAAGCACGACCTAAACT
Found at i:24355836 original size:26 final size:26
Alignment explanation
Indices: 24355800--24355852 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24355790 GTTGACTTAG
* *
24355800 GCATACGGAGTTTATCCCAAGTCTAA
1 GCATAAGGAGTTCATCCCAAGTCTAA
* *
24355826 GCATAAGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATCCCAAGTCTAA
24355852 G
1 G
24355853 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCAAGTCTAA
Found at i:24356495 original size:159 final size:158
Alignment explanation
Indices: 24356224--24356535 Score: 419
Period size: 159 Copynumber: 2.0 Consensus size: 158
24356214 TAAGATCGGA
* * *
24356224 CTGGACCGAGGGTTGCGGCAATAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCCCAACTT
1 CTGGACCGAGGGTTGCGGCAACAGGACCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCAACTT
* * * *
24356289 ACACATTCTGCCTCTCCGACCGGCTGAGCGGCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATA
66 ACACATTATGCCTCTCCGACCGGCTCAGCGCCCGCATGCCCATTTCGTGGGTTGACTTAGGCATA
* *
24356354 GGGAGCTCAT-TCCATGTCTAAGCCCTAG
131 CGGAGCTCATGCCCA-GTCTAAGCCCTAG
* * * * *
24356382 CTGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCTAGCT
1 CTGGACCGAGGGTTGCGGCAACAGGACCGGCAGCACGCAG-GGGGGACCGGGCCGATCCCCAACT
* * * * *
24356447 TACGCATTATGCCTCTTCGACCGGCTCAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCAT
65 TACACATTATGCCTCTCCGACCGGCTCAGCGCCCGCATGCCCATTTCGTGGGTTGACTTAGGCAT
*
24356512 ACGGAGTTCATGCCCAGTCTAAGC
130 ACGGAGCTCATGCCCAGTCTAAGC
24356536 ATATGGAGTT
Statistics
Matches: 132, Mismatches: 20, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
158 36 0.27
159 93 0.70
160 3 0.02
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.21
Consensus pattern (158 bp):
CTGGACCGAGGGTTGCGGCAACAGGACCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCAACTT
ACACATTATGCCTCTCCGACCGGCTCAGCGCCCGCATGCCCATTTCGTGGGTTGACTTAGGCATA
CGGAGCTCATGCCCAGTCTAAGCCCTAG
Found at i:24356544 original size:26 final size:26
Alignment explanation
Indices: 24356508--24356560 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24356498 GTTGACTTAG
24356508 GCATACGGAGTTCATGCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
* *
24356534 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
24356560 G
1 G
24356561 TTTGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAGTCTAA
Found at i:24356709 original size:342 final size:347
Alignment explanation
Indices: 24355768--24356752 Score: 1014
Period size: 365 Copynumber: 2.8 Consensus size: 347
24355758 GTCGACTGAA
* * *
24355768 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCAAGTCTAAGCATAAG
1 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC-AGTCTAAGCATAAG
* ** * *
24355833 GAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCAACAGTAGGATCGATAGCACGTA
65 GAGTTCATTCCCAGTCTAAGATCGGA-CGGATCGAGGGTTGCGGCAGTAGGATCGACAGCACGCA
* * * * *
24355898 TGAGGGACCGGGCCGATCCCCGGCTTATGCATTTTGCCTCTCTG-GCCGACTGAGCACCCACACG
129 GGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGAG--GACTGAGCACCCACACG
* *
24355962 CTTGTTTCGTGGGTTAGCTTTGGCATACGGAGTACATTCCATGTCTAAGCCCTAGTCGGACCGAG
192 CTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCTAGTCGGACCGAG
* * * * *
24356027 GGTTGTGGTAGTAGGATCGGCAGTGAGATCGACAGCACGTAGAGGGGGATCAAGCTGATCCTCGG
257 GGTTGTGGCAGCAGGATC-GC----AGA--GACAGCACGCAGAGGGGGACCAAGCTGATCCTCAG
24356092 CTTACGCATTACCCTCTCCGACCGGCCTCTCCGCCGGTTGAG
315 CTTACGCATTACCCTCTCCGACCGG-C-CT---CC----GAG
* * * *
24356134 AGCCCGCATGATCGTTTTGTGGGTTGACTTAGG-AAACGGAGTTCATCCCCAGTCTAAGCATACA
1 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATA-A
* * * *
24356198 -GAGTTCATTCCCAGTTTAAGATCGGACTGGACCGAGGGTTGCGGCAATAGGATCGGCAGCACGC
64 GGAGTTCATTCCCAGTCTAAGATCGGAC-GGATCGAGGGTTGCGGCAGTAGGATCGACAGCACGC
* ** * ** * *
24356262 AGGGGGGATCGGGCCGATCCCCAACTTACACATTCTGCCTCTCCGACCGG-CTGAGCGGCCGCAT
128 AGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGA--GGACTGAGCACCCACAC
*** *
24356326 GCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCTAG-CTGGACC
191 GCTTGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCTAGTC-GGACC
* *
24356389 GAGGGTTGTGGCAGCAGGA-C-C-G-G-CAGCACGCAGAGGGGGACC-GGGTCGATCC-CTAGCT
254 GAGGGTTGTGGCAGCAGGATCGCAGAGACAGCACGCAGAGGGGGACCAAGCT-GATCCTC-AGCT
* *
24356447 TACGCATTATGCCTCTTCGACCGG-CT-C-AG
317 TACGCATTA-CCCTCTCCGACCGGCCTCCGAG
* *
24356476 CGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATGCCCAGTCTAAGCATATG
1 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATAAG
* * * * *
24356541 GAGTTCATTCCCAGTCTAAGTTTGAATCGGATCGAGGGTTGCGGCAGCAGGATCGACAGTA-GCA
65 GAGTTCATTCCCAGTCTAAGATCGGA-CGGATCGAGGGTTGCGGCAGTAGGATCGACAGCACGCA
* * *
24356605 GGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGAGGACTGAGCACCCACACGC
129 GGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCC-GAGGACTGAGCACCCACACGC
* * * * *
24356670 TTGTTTCGTCGATTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGACCAAGG
193 TTGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCTAGTCGGACCGAGG
*
24356735 GTTGTGGCAGCAGAATCG
258 GTTGTGGCAGCAGGATCG
24356753 GTAACAGGAT
Statistics
Matches: 518, Mismatches: 81, Indels: 62
0.78 0.12 0.09
Matches are distributed among these distances:
341 3 0.01
342 148 0.29
343 81 0.16
344 1 0.00
347 1 0.00
351 2 0.00
352 3 0.01
353 34 0.07
354 13 0.03
357 1 0.00
362 1 0.00
364 3 0.01
365 192 0.37
366 34 0.07
368 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (347 bp):
CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATAAGG
AGTTCATTCCCAGTCTAAGATCGGACGGATCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGG
GGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGAGGACTGAGCACCCACACGCTTG
TTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTT
GTGGCAGCAGGATCGCAGAGACAGCACGCAGAGGGGGACCAAGCTGATCCTCAGCTTACGCATTA
CCCTCTCCGACCGGCCTCCGAG
Found at i:24357589 original size:25 final size:26
Alignment explanation
Indices: 24357560--24357609 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
24357550 GTTGACTTAG
*
24357560 GCATATGGAGTTCA-TCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
24357585 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAATCTA
24357610 TGATCAGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:24358410 original size:158 final size:157
Alignment explanation
Indices: 24357946--24358446 Score: 492
Period size: 159 Copynumber: 3.2 Consensus size: 157
24357936 TCCAGTTTAA
* *
24357946 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGATCAAACCGAGGGTTATGGCAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
24358010 AGCACGTCG-GGGGACCAGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCAGCCGGCTAAGCGC
65 AGCACGTAGAGGGGA-CAGGTCCATCCCCGGCTTGCGCATTCTGCCTCTCCAGACGGCTAAGCGC
* * * *
24358074 CCACATGCCCATTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * * * * * ** *
24358103 GCATAGGGAGCTCATTCCATGTCTAAG-CCATAGCCGAACTGAGGGTTGTTGCAGTGGGA-CTGG
1 GCATACAGAGTTCATTCCATGTCTAAGATCAGATCAG-ACCGAGGGTTGTGGCAGCAGGATC-GA
* * * * * * * *
24358166 CAGCACGCAGAGGGGGACCGGCCCAATCCTCGGCTTGCGCATTATGCCTTTTC-GACTGGCTCAG
64 CAGCACGTAGA-GGGGACAGGTCC-ATCCCCGGCTTGCGCATTCTGCCTCTCCAGAC-GGCTAAG
* *
24358230 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
24358262 ACATACGGAGTTCATTCC-TAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCAGGATCGAT
1 GCATACAGAGTTCATTCCAT-GTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGAC
** * * *
24358326 AGCACGTAGAGGGGATTGGGTCCATCCCCGGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGCGC
65 AGCACGTAGAGGGGA-CAGGTCCATCCCCGGCTTGCGCATTCTGCCTCTCCAGACGGCTAAGCGC
24358391 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
24358420 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
24358447 CATATAGAGC
Statistics
Matches: 268, Mismatches: 63, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
156 8 0.03
157 46 0.17
158 94 0.35
159 114 0.43
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGAGGGGACAGGTCCATCCCCGGCTTGCGCATTCTGCCTCTCCAGACGGCTAAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24358605 original size:26 final size:26
Alignment explanation
Indices: 24358569--24358619 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
24358559 GTTGACTTAC
24358569 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
24358595 GCATACGGAGTTCATTCCTAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
24358620 TGATCGAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24359573 original size:26 final size:26
Alignment explanation
Indices: 24359543--24359595 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24359533 GTTGACTTAG
*
24359543 GCATACAAAGTTCATCCCCATTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
** *
24359569 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
24359595 G
1 G
24359596 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:24359877 original size:159 final size:157
Alignment explanation
Indices: 24359709--24360071 Score: 345
Period size: 158 Copynumber: 2.3 Consensus size: 157
24359699 CATATGCCCA
* *
24359709 TTTCATGGGTTAGCTTAGGCATAGGGA-TCTCATTCCATGTCTAAGCCCCAACCAAACAAAGGGT
1 TTTCGTGGGTT-GCTTAGGCATACGGAGT-TCATTCCATGTCTAAGCCCCAACCAAACAAAGGGT
* * * *
24359773 GGTGGCAGC-GAGACTGGCAGCACGCAAAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTATGC
64 GGCGACAGCAG-GACTGACAGCAAGC-AAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTATGC
* * *
24359837 CTCTTCGGTCGGCTCAGCACCTGCATGATCG
127 CTCTTCGATCGGCTCAGCACCCGCACGATCG
* * ***** ** *
24359868 TTTCGTGGGTTGACTTATGCATACGAAGTTCATTCTCA-GTCTAAGATTGGACCGGACCAAGGGT
1 TTTCGTGGGTTG-CTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCCCAACCAAACAAAGGGT
* * * ** * * *
24359932 TGCGACAGCAGGATTGACAGCAAGCAAGGGGGACCGGGTTGATTCTCGGCTTGCGCATTCTTCCT
64 GGCGACAGCAGGACTGACAGCAAGCAAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTATGCCT
* ** * *
24359997 CTTCGATCGGCTGAGTGCCCGCACGCTTG
129 CTTCGATCGGCTCAGCACCCGCACGATCG
*
24360026 TTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
1 TTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
24360072 ATACGGAGCT
Statistics
Matches: 162, Mismatches: 36, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 93 0.57
159 63 0.39
160 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (157 bp):
TTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAAACAAAGGGTGG
CGACAGCAGGACTGACAGCAAGCAAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTATGCCTCT
TCGATCGGCTCAGCACCCGCACGATCG
Found at i:24360792 original size:26 final size:26
Alignment explanation
Indices: 24360755--24360807 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24360745 GTTGACTTAG
*
24360755 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
24360781 GCATAC-GAAGTTCATTCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
24360807 G
1 G
24360808 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:24362248 original size:355 final size:353
Alignment explanation
Indices: 24361618--24362937 Score: 1305
Period size: 355 Copynumber: 3.7 Consensus size: 353
24361608 TGCTTCTCTG
* * **
24361618 GTCGGCTGAGCGCGCGCACACTCATTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTC
1 GTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
* * * * * ** * *
24361683 TATGGATATGGAGTTCATTCCCTGTCTAAGATTGGACTAGATCGAGGGTTGCGGCAGTAGGATC-
66 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGATCA
* * * * * * *
24361747 GACAGCACGCAGGAGGGATC-GAGCCGATCCCTGACTTACGCATTTTACCTCTCCGGC-CGGCTA
131 G-CAGCACGCAGGAGGGACCTG-GTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACTCGGCTA
* * * * *
24361810 AGCCCCCGCACGCTCGTTTCGTGGCTTGGCTTCGGCATATGGAGTACATTCCATGACTAAGCCCC
194 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCC
* *
24361875 TGCCGGACCGAGGGTTGTGGCAGTAGGACCGACAGCGAGATCGGCAGCACACAGAGGTGGACCGG
259 AGCCGGACTGAGGGTTGTGGCAGTAGGACCG-CAGC-AGATCGGCAGCACACAGAGG-GGACCGG
24361940 GCTGATCCCTGACTTACGCATTATGCCTCTCCA
321 GCTGATCCCTGACTTACGCATTATGCCTCTCCA
* * * *
24361973 GTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAACCCCAGTA
1 GTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
* * * *
24362038 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGATAGCAGGATCA
66 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGATCA
* * * * * *
24362103 GCAGTACACAGGGGGGGCCTGGTCGATCCCCGGCTTGCGTATTCTACATCTCCGACT-GGCTAAG
131 GCAGCACGCAGGAGGGACCTGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACTCGGCTAAG
* * *
24362167 CGCCCGCACGCTCATTTCGTGGGTTGCCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAG
196 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAG
* *
24362232 CCGGACTGAGGGTTGTGGTAGTAGGACCGGCAGCAGGATCGACAGCATGCACAG-GGGGACCGGG
261 CCGGACTGAGGGTTGTGGCAGTAGGACC-GCAGCA-GATCGGCAGCA--CACAGAGGGGACCGGG
**
24362296 CTGATCCCCAACTTACGCATT-TGCCTCTCC-
322 CTGATCCCTGACTTACGCATTATGCCTCTCCA
* * * * * *
24362326 GACCGGTTGAACGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATGCTCAGT
1 G-TCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
* * * * * * *
24362391 CTGAGCATACGGAGTTCATCCCCAGTCTAAGATCGAACCGAATCGAGGGTTGTGATAGTAGGATC
65 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGATC
* * * * * * * * *
24362456 GGCAGCACGCAGGAGGGACCGGGTTGATCCTCGGCTTGCGCATTTTGCTTCTCCGA-TCGGGTGA
130 AGCAGCACGCAGGAGGGACCTGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACTCGGCTAA
* * * * * * *
24362520 GCGCCTGTATGCTCGTTTCATGGGTTGGCATAGGCATACGGAGTACATTCCATGTCTAAGCTCTA
195 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCA
* * * ** *
24362585 GTCGGA-TCGAGGGTTGTGGC---A--A-TG--GC--ATCGGTAGCATGCAGAGGGGGATCGGGC
260 GCCGGACT-GAGGGTTGTGGCAGTAGGACCGCAGCAGATCGGCAGCACACAGA-GGGGACCGGGC
* *
24362639 TGATCCTCGGCTTGCACATTATGCCTCTCCGATCGGCCTCTCCA
323 TGAT-C-C--C-TG-AC-TTACGCAT-T---AT--GCCTCTCCA
** * *
24362683 GTCGATTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
1 GTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
* * * *
24362748 TAAGTATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCA
66 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGATCA
* * * * ** * * * *
24362813 ACAGCATGCAGG-GGGAGACTGGGTCGATACCTAGCTTGCACATTCTACCTCTCCG-GTCGACTG
131 GCAGCACGCAGGAGGGA-CCT-GGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACTCGGCTA
* *
24362876 AGAGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
194 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGC
24362938 AAACGGAGCT
Statistics
Matches: 792, Mismatches: 143, Indels: 58
0.80 0.14 0.06
Matches are distributed among these distances:
340 3 0.00
342 22 0.03
343 1 0.00
344 1 0.00
345 2 0.00
346 1 0.00
347 1 0.00
348 2 0.00
349 7 0.01
350 1 0.00
351 1 0.00
353 3 0.00
354 239 0.30
355 282 0.36
356 135 0.17
357 91 0.11
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (353 bp):
GTCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGGATCA
GCAGCACGCAGGAGGGACCTGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACTCGGCTAAG
CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAG
CCGGACTGAGGGTTGTGGCAGTAGGACCGCAGCAGATCGGCAGCACACAGAGGGGACCGGGCTGA
TCCCTGACTTACGCATTATGCCTCTCCA
Found at i:24362400 original size:26 final size:26
Alignment explanation
Indices: 24362369--24362418 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
24362359 GTTGACTTAG
* *
24362369 GCATACGGAGTTCATGCTCAGTCTGA
1 GCATACGGAGTTCATCCCCAGTCTGA
24362395 GCATACGGAGTTCATCCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
24362419 AAGATCGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTGA
Found at i:24362763 original size:26 final size:26
Alignment explanation
Indices: 24362727--24362777 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
24362717 TGACTTAGGC
24362727 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
24362753 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
24362778 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:24363651 original size:26 final size:26
Alignment explanation
Indices: 24363621--24363673 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24363611 GTTGACTTAG
*
24363621 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24363647 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24363673 G
1 G
24363674 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24364344 original size:26 final size:26
Alignment explanation
Indices: 24364315--24364367 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24364305 GTTGACTTAG
24364315 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
24364341 GCATACAGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24364367 G
1 G
24364368 ATCAGTCAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24365590 original size:368 final size:366
Alignment explanation
Indices: 24364938--24365801 Score: 907
Period size: 368 Copynumber: 2.3 Consensus size: 366
24364928 TGATCCCCGG
* * * * * * * * * *
24364938 CTTACGCATTATGCCTTTCC-GACCGATTGAGCACCCACATGCTCGTTTTGTGGGTTGACTTATG
1 CTTACGCATTCTACCTCTCCAG-CCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGG
* ** * *
24365002 CATACGGAGTTCATTCCAAGTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCAAGA-TCGGCA
65 CATACGGAG-TCATTCCAAGTCTAAG-CCCAACCGGACCGAGGGTTGTGGCAGCAGGACT-GGCA
* * * **
24365066 -CGGGATTGACAGCACACAGAGGGGGATCGAGCTGATCCTCGGCTTGGGCATTATTGCTCTTCGA
127 GCGAGATCGACAGCACACAGAGAGGGATCGAGCTGATCCTCGGCTTACGCATTATTGCTCTTCGA
* * * * *
24365130 CCAGCCTTTCCAGTCGATTGAGCGCCCGTATGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGT
192 CCAGCCTCTCCAGCCGACTGAGCACCCGTATGCTCGTTTCATGAGTTGACTTAGGCATACAGAGT
* * * * *
24365195 TCATCCCTAATCTAAGCATACGGAGTTCATTCCCGGTGTAAGATCAGACCGGATCGAGGGTTGCA
257 TCATCCCTAATCTAAGCATACGGAGTTCATTCCCGGTGTAAGATCAAACCGAACCAAGGGTT-AA
* * ** *
24365260 G-TAGCAGGATCGATGGCACGCAGAGGGGACGGGGTCGATCCTTAG-
321 GACAGCAGGATCAACAGCACGCAGAGGGGACCGGGTCGATCC-TAGA
* *** *
24365305 CTTGCGCATTCTACCTCTTTGGTCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGC
1 CTTACGCATTCTACCTCTCCAGCCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGC
* * *
24365370 ATACGGAGTACATTCCACGTCTAAGCCCCAACCGGACTGAGGGTTGTGGTAGCAGGACTGGCAGC
66 ATACGGAGT-CATTCCAAGTCTAAG-CCCAACCGGACCGAGGGTTGTGGCAGCAGGACTGGCAGC
* * * * * *
24365435 TAGATCGGCAGCACACAGAGAGGGATCGGGCTGATCCTTGGCTTACGCGTTA-TGC-CTGTCGGG
129 GAGATCGACAGCACACAGAGAGGGATCGAGCTGATCCTCGGCTTACGCATTATTGCTCT-TC-GA
* ** * *
24365498 CCTGCCTCTCTGGCCGACTGAGCACCCGTATGTTCGTTTCATGGGTTGACTTAGGCATACAGAGT
192 CCAGCCTCTCCAGCCGACTGAGCACCCGTATGCTCGTTTCATGAGTTGACTTAGGCATACAGAGT
* *
24365563 TCATCTCC-AGTCTAAGCATACGGAGTTCATTCCCTGTGTAAGATCAAACCGAACCAAGGGTTAA
257 TCATC-CCTAATCTAAGCATACGGAGTTCATTCCCGGTGTAAGATCAAACCGAACCAAGGGTTAA
* * *
24365627 GACAGTAGGATCAACAGCACGCAGGGGGGACCGGGTCGATCCTCGA
321 GACAGCAGGATCAACAGCACGCAGAGGGGACCGGGTCGATCCTAGA
* * * * * *
24365673 CTTACGCATTCTGCCTCTCCAGCCGGCTGAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGC
1 CTTACGCATTCTACCTCTCCAGCCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGC
* ** * * * * *
24365738 ATAGGGAGCTCATTGTATGTCTAAGCCCAATCAGACCGAGGGTTGTGGCAGCGGGACCGGCAGC
66 ATACGGAG-TCATTCCAAGTCTAAGCCCAACCGGACCGAGGGTTGTGGCAGCAGGACTGGCAGC
24365802 ATGTAGAGGG
Statistics
Matches: 407, Mismatches: 80, Indels: 20
0.80 0.16 0.04
Matches are distributed among these distances:
366 3 0.01
367 141 0.35
368 260 0.64
369 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (366 bp):
CTTACGCATTCTACCTCTCCAGCCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGC
ATACGGAGTCATTCCAAGTCTAAGCCCAACCGGACCGAGGGTTGTGGCAGCAGGACTGGCAGCGA
GATCGACAGCACACAGAGAGGGATCGAGCTGATCCTCGGCTTACGCATTATTGCTCTTCGACCAG
CCTCTCCAGCCGACTGAGCACCCGTATGCTCGTTTCATGAGTTGACTTAGGCATACAGAGTTCAT
CCCTAATCTAAGCATACGGAGTTCATTCCCGGTGTAAGATCAAACCGAACCAAGGGTTAAGACAG
CAGGATCAACAGCACGCAGAGGGGACCGGGTCGATCCTAGA
Found at i:24368186 original size:26 final size:26
Alignment explanation
Indices: 24368150--24368202 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24368140 GTTGACTTAG
*
24368150 GCATACGGAGTTCATCCACAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
*
24368176 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
24368202 G
1 G
24368203 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:24368797 original size:367 final size:365
Alignment explanation
Indices: 24368120--24368937 Score: 1003
Period size: 367 Copynumber: 2.2 Consensus size: 365
24368110 CGGCTGAGTG
* *
24368120 CCCGCACGCTAATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCACAGTCTAAGCATACAGA
1 CCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCC-CAGTCTAAGCATACAGA
* ** * * * *
24368185 GTTCATCCCCAGTCTAAGATCGGACTGGATCGAGGGTTACGATAATAGGATCGACAGCACGCAGG
65 GTTCATTCCCAGTCTAAGATCAAACCGGATCGAAGGTTACGACAACAGGATCGACAGCACGCAGG
* * * * *
24368250 GGGGACCGAGCCGGTCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGTTGAGCCTGCACGCTCAT
130 GGGGACCGAGCCGATCCCCAGCTTACGCATTCTGCCTCATAGACCGGTTGAGCCCGCACGCTCAT
* *
24368315 TTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCTAGTCGGACCGAGGGTTA
195 TTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGCCGGACCGAGGGTTA
* ** ** * * * * **
24368380 TGGTAGTAGGACTGACAGTGGGATCGAGAGCATGCAGAAGGGGTTCGGGCTGATCCCCGGCTTGT
260 TGGCAACAGGACTGACAGCAGGATCGACAGCACGCAGAAGGGGATCGGGCTGATCCCCGACTTAC
* * *
24368445 GCATTATGCCTCT-CTGATCGGCCTTTTCGATCGGTTGAGCA
325 GCATTATGCCTCTCCAG-CCGGCCTCTTCGATCGGTTGAGCA
* * * *
24368486 TCCGCATGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCTAGTCTAAGCATACAGAG
1 CCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAGAG
* * * * *
24368551 TTCATTCCCAATCTAAGATCAAACCGGATTGAAGGTTGCGGCAGCAGGAAT-GACAGCACGCAGG
66 TTCATTCCCAGTCTAAGATCAAACCGGATCGAAGGTTACGACAACAGG-ATCGACAGCACGCAGG
* * ** * * *
24368615 GGGGATCGGGTTGATCCCCGGCTTATGCATTCTGCCTCCATAG-CCGGTTGAGCACCCGTACGCT
130 GGGGACCGAGCCGATCCCCAGCTTACGCATTCTGCCT-CATAGACCGGTTGAG--CCCGCACGCT
* * *
24368679 CATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGAGGT
192 CATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGCCGGACCGAGGG
* * * ** *
24368744 TTGTGGCAACAGGATTGGCAGCAGGATCGACAGCACGTTGAGGGGGATCGGGCTGATCCCCGACT
257 TTATGGCAACAGGACTGACAGCAGGATCGACAGCACGCAGAAGGGGATCGGGCTGATCCCCGACT
* **
24368809 TACGCATTATGCCTCTCCAGCCGGCCTCTTCGGTCGGTTGAGTG
322 TACGCATTATGCCTCTCCAGCCGGCCTCTTCGATCGGTTGAGCA
* * *
24368853 CCCGCATGCTCATTTCGTTGGTTGAATTAGGCATACGGAGTTCATCCCCAGTTTAAGCATACAGA
1 CCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACAGA
24368918 GTTCATTCCCAGTCTAAGAT
65 GTTCATTCCCAGTCTAAGAT
24368938 TGGACCAGAC
Statistics
Matches: 380, Mismatches: 66, Indels: 10
0.83 0.14 0.02
Matches are distributed among these distances:
365 104 0.27
366 47 0.12
367 191 0.50
368 38 0.10
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (365 bp):
CCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAGAG
TTCATTCCCAGTCTAAGATCAAACCGGATCGAAGGTTACGACAACAGGATCGACAGCACGCAGGG
GGGACCGAGCCGATCCCCAGCTTACGCATTCTGCCTCATAGACCGGTTGAGCCCGCACGCTCATT
TCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGCCGGACCGAGGGTTAT
GGCAACAGGACTGACAGCAGGATCGACAGCACGCAGAAGGGGATCGGGCTGATCCCCGACTTACG
CATTATGCCTCTCCAGCCGGCCTCTTCGATCGGTTGAGCA
Found at i:24368912 original size:26 final size:26
Alignment explanation
Indices: 24368883--24368935 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24368873 GTTGAATTAG
* *
24368883 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24368909 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24368935 G
1 G
24368936 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24369418 original size:26 final size:26
Alignment explanation
Indices: 24369368--24369420 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24369358 GTTGGCTTAG
* *
24369368 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24369394 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24369420 G
1 G
24369421 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24370897 original size:26 final size:26
Alignment explanation
Indices: 24370861--24370911 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
24370851 TGACTTAGGA
24370861 ATACAGAGTTCA-TCCCTAGTCTAAGC
1 ATACAGAGTTCATTCCC-AGTCTAAGC
*
24370887 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
24370912 ATCGAACAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:24371227 original size:26 final size:26
Alignment explanation
Indices: 24371191--24371243 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24371181 GTTGACTTAG
*
24371191 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCCT-AGTCTAA
24371217 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
24371243 G
1 G
24371244 ATCAGCCAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:24371693 original size:157 final size:155
Alignment explanation
Indices: 24371217--24371715 Score: 511
Period size: 158 Copynumber: 3.2 Consensus size: 155
24371207 CTCAGTCTAA
* * *
24371217 GCATACAGAGTTCATTCC-TAGTCTAAGATCAGCCAGACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACAGAGTTCATTCCAT-GTCTAAGATCAGTCAGACCGAGGGTTGCGACAGCAGGATCGATA
* ** * * *
24371281 GCACGTAAGGGGGACTAGGCCGATCCC-CAGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGC
65 GCATG-AAGGGGGACCGGGTCGATCCCTGA-CTTGCGCATTCTACCTCTCTG-CCGACTGAGCGC
*
24371345 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
127 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * ** *
24371374 GCATAGAGAGCTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGTAGCAGGACCGATA
1 GCATACAGAGTTCATTCCATGTCTAAG-ATCAGTCAGACCGAGGGTTGCGACAGCAGGATCGATA
* * * * * * * *
24371439 GCATGTAGAGGGAGCCGGGTTGAT-CCTCGACTTGCGCATTATGCCTCTTCTGTCGGCTTAGCGC
65 GCATGAAGGGGGA-CCGGGTCGATCCCT-GACTTGCGCATTCTACCTC-TCTGCCGACTGAGCGC
* * *
24371503 CCGCACGCTCATTTCGTGGGTTGACTTAT
127 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
24371532 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAATCAAACTGAGGGTTACGACAGCAAGATCGAT
1 GCATACAGAGTTCATT-CCATGTCTAAGATC-AGTCAGACCGAGGGTTGCGACAGCAGGATCGAT
* * *
24371596 AGCATGCAGGGGGACCGGGTCGATCCCTGACTTGTGCATTCTACCTCTCTAGCCGACTGAGCGTC
64 AGCATGAAGGGGGACCGGGTCGATCCCTGACTTGCGCATTCTACCTCTCT-GCCGACTGAGCGCC
* *
24371661 CACACGCTCGTTTTGTGGGTTGGCTTAG
128 CGCACGCTCGTTTCGTGGGTTGGCTTAG
24371689 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
24371716 CATACGGAGC
Statistics
Matches: 272, Mismatches: 59, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
156 6 0.02
157 112 0.41
158 147 0.54
159 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (155 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGTCAGACCGAGGGTTGCGACAGCAGGATCGATAG
CATGAAGGGGGACCGGGTCGATCCCTGACTTGCGCATTCTACCTCTCTGCCGACTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24371829 original size:11 final size:11
Alignment explanation
Indices: 24371813--24371837 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
24371803 CGGGTGACCG
24371813 TCGTCGGAGCA
1 TCGTCGGAGCA
24371824 TCGTCGGAGCA
1 TCGTCGGAGCA
24371835 TCG
1 TCG
24371838 CCGAAGAGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.20
Consensus pattern (11 bp):
TCGTCGGAGCA
Found at i:24373672 original size:368 final size:367
Alignment explanation
Indices: 24372814--24374145 Score: 1416
Period size: 367 Copynumber: 3.6 Consensus size: 367
24372804 ATAACAAGAG
* *
24372814 GTTCATCCCCAGTCTAAGCATAC-GAAGTTCATTCCCAGTCTAAGATCAGA-TCGAACCGAGGGT
1 GTTCATCCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCAAACT-GGACCGAGGGT
* * * * * ** * * *
24372877 TGCAGCA-A-CAGGATCGATAGCACGCAGGAGGGACCGGGTCGATCCTTGGCTTACGCATTTTGC
64 T-CCG-ATAGCAGGATCGACAGCACGCAGGGGGGAACGAGTCGATCCCCGACTTGCGCATTCTGC
** *** ** * * * **
24372940 CTCTCCAGTTGGTTGGGCTCCCGCATGCTCGTTTCATTGGTTGGCTTAGGCATAAAGAGTACATT
127 CTCTCTGGCCAGTTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATT
* *
24373005 CCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAGGACTGACAGCAGGATC-ATCAGCA
192 CCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACTGACAGCGGGATCGA-CAGCA
* * * * * * *
24373069 CGCAAAGGGGGACCGGGTTGATCCTCGGCTTGCGTATTATACCTCTCTAATCGGCCTTTCGGTCG
256 CGCAGAGGGGGACCGGGTTGATCCTCGACTTGCGCATTATACCTCTCTAGTAGGCCTCTCGGCCG
* * *
24373134 GTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGTA
321 GCTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
* * * * * *
24373181 GTTCATCCCCAGTCTAAACATACAGAGTTCATTCCCAGTATAAGATCAGATTGGATCGAGGGTTG
1 GTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTC
* * * * * *
24373246 CGATAGCAGGATTGATAGCACGTAGGGGGG-ACCAGGCTGATCCCCGACTTGTGCATTCTGCCTC
66 CGATAGCAGGATCGACAGCACGCAGGGGGGAACGAGTC-GATCCCCGACTTGCGCATTCTGCCTC
* *
24373310 TCTGGCCAGTTGAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAATACATTCCA
130 TCTGGCCAGTTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCA
* * ** *
24373375 CGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCCA-CAGGACTGGTAGCGGGATCGACAGCACAC
195 TGTCTAAGCCCCAGTCGGACCGAGGGTTGTGG-CAGCAGGACTGACAGCGGGATCGACAGCACGC
* * * * *
24373439 AGAGGGGGACCGGGCTGATCCTCGACTTACGCATTATGCCTCT-TCAGTTGGCCTCTCTGGCCGA
259 AGAGGGGGACCGGGTTGATCCTCGACTTGCGCATTATACCTCTCT-AGTAGGCCTCTC-GGCCGG
* ** * *
24373503 CTGAATGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATGCGAA
322 CTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
** *
24373549 GTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTC
1 GTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTC
* * * * *
24373614 CGATAGTAGGATCGGCAGCACGCAGGGGGGAACGAGTTGATCCCCGGCTTGCGCATTCTACCTCT
66 CGATAGCAGGATCGACAGCACGCAGGGGGGAACGAGTCGATCCCCGACTTGCGCATTCTGCCTCT
* * * * * *
24373679 CTGGCCTA-CTGAGCGCCCGTACGGTCGTTTCATTGGTTAGCTTAGGCATACGGAGTACATTCCA
131 CTGGCC-AGTTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCA
* * * *
24373743 TGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGTAGCAGCACCGACAGCGGGATCGACAGCACGCA
195 TGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACTGACAGCGGGATCGACAGCACGCA
* ** * * * * * * * *
24373808 GAGTGGGAATGGGTTGATCC-CTAGCTTGTGCATTACAACTCTCTGGCAGGCC-CTCCGACTGGC
260 GAGGGGGACCGGGTTGATCCTCGA-CTTGCGCATTATACCTCTCTAGTAGGCCTCT-CGGCCGGC
*
24373871 TGAGTGCCCACACGCTCGCTTT-GTGGGTTGACTTAGGCATACGGA
323 TGAGTGCCCACACGCTCG-TTTCGTGGGTTGACTTAGGCATACGAA
* * **
24373916 GTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTTTAAGATCAAACCGGACCGAGGGTAG
1 GTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTC
* * *
24373981 CAATAGCAGGATCGACAGCACGCAAGGGGGACCGAGTCGATCCCCGACTTGCGCATTCTGCCTCT
66 CGATAGCAGGATCGACAGCACGCAGGGGGGAACGAGTCGATCCCCGACTTGCGCATTCTGCCTCT
** * * * *
24374046 -TCGGCC-GGCGAAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTC
131 CT-GGCCAGTTGAA-CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTC
* * *
24374108 TATGTCTAAACCCCAGTCGGATCGAGGGTTGTGGCAGC
193 CATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGC
24374146 GGGGCCGACA
Statistics
Matches: 798, Mismatches: 147, Indels: 40
0.81 0.15 0.04
Matches are distributed among these distances:
365 1 0.00
366 9 0.01
367 481 0.60
368 301 0.38
369 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (367 bp):
GTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTC
CGATAGCAGGATCGACAGCACGCAGGGGGGAACGAGTCGATCCCCGACTTGCGCATTCTGCCTCT
CTGGCCAGTTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCAT
GTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACTGACAGCGGGATCGACAGCACGCAG
AGGGGGACCGGGTTGATCCTCGACTTGCGCATTATACCTCTCTAGTAGGCCTCTCGGCCGGCTGA
GTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
Found at i:24373943 original size:26 final size:26
Alignment explanation
Indices: 24373907--24373959 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24373897 GTTGACTTAG
*
24373907 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
24373933 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24373959 G
1 G
24373960 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24374221 original size:159 final size:158
Alignment explanation
Indices: 24373993--24375081 Score: 612
Period size: 159 Copynumber: 6.8 Consensus size: 158
24373983 ATAGCAGGAT
* * * **
24373993 CGACAGCACGCAAGGGGGACCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCGAA
1 CGACAGCACGCAAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTCA
* * * *
24374058 GCGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCTATGTCTAAACCCCA
66 GCGCCCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCATGTCTAAACCCCA
* *
24374123 GTCGGATCGAGGGTTGTGGCAGCGGGGC
131 GTCGGACCGAGGGTTGTGGCAGCGGGAC
* * *
24374151 CGACAGCACACAGAGGGGGACCGGGTCGATCCCC-AGCTTGCCCATTATGCCTTTTCGACCGGCT
1 CGACAGCACGCA-AGGGGGACCGGGTCGATCCCCGA-CTTGCGCATTATGCCTCTTCGACCGGCT
* * * * ** * *
24374215 CAGCGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACAAAGTTCATTCCCA-GTCTAAGAT
64 CAGCGCCCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATT-CCATGTCTAA-AC
** * * * ** * * *
24374279 CGGA-CCGAACCAAGGGTTACGGTAGC-AGAT
127 CCCAGTCGGACCGAGGGTTGTGGCAGCGGGAC
* * * * * * * * *
24374309 CGACAGCACGCAATGGAGGATCGGGTCGATCCCCGACTTACGGATTCTGCCTCTCCGATCGACTG
1 CGACAGCACGCAA-GGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTC
* * * * * * * *
24374374 AGCACCCGTACGCCCGTTTCGTGGTTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCC
65 AGCGCCCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCATGTCTAAACCCC
* *
24374439 AGTCGGACCGAGGGTTGTGACAGTGGGAC
130 AGTCGGACCGAGGGTTGTGGCAGCGGGAC
* * * * * * * *
24374468 AGGCAGCACGTAGAGGGGGATCGGCTCGATCCTCGGCTTGCGCATTATGCCTCTTCGGCCGGCTC
1 CGACAGCACGCA-AGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTC
* * * * *
24374533 AGTGCCCACACACTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCC-TGGTCTAAGCAT
65 AGCGCCCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCAT-GTCTAA--A-
* ** *** * ** *
24374597 ACGGAGTTCATTCCTAGTCTAAGATCGGGTCAGACCGAGGGTTA-
126 CCCCAG-TCGGACCGAGGGT-TG-T--GG-CAG--C--GGG--AC
* ** * ** * * * * * *** * *
24374641 CGGCAGCACATAAGGGGGATCGGACCGATCCCTGGCTTGCACATTTTACCTCTTCGGTTGGTTGA
1 CGACAGCACGCAAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTCA
* * * * * * *
24374706 GCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGTATAGGGAGCTCATTCCATGTATAAGCCCCA
66 GCGCCCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCATGTCTAAACCCCA
*
24374771 GTCGGACCGAGGGTTGTGGTAGCGGGAC
131 GTCGGACCGAGGGTTGTGGCAGCGGGAC
*** * * * *
24374799 CGACAGCACGCAGAGGGGGACCGAACCGATCCCTGGCTTGCGCATTTTGCCTCTTCGGCCGGCTC
1 CGACAGCACGCA-AGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTC
* * * * * * * * * *
24374864 AACACTCGCACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GCCTAAGA-T
65 AGCGCCCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATT-CCATGTCTAA-ACC
* ** ** * ** ** *
24374927 CGAACCAAACTGAGGGTTACGGCAGTAGGAT
128 CCAGTCGGACCGAGGGTTGTGGCAGCGGGAC
* * * * * * * * * *
24374958 TGACAGCACGCAGGGGGGATCGGGTTGATCCCTGGCTTGTGCATTCTGCCTC-TCTGATCGGCTA
1 CGACAGCACGCAAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTC-GACCGGCTC
* * * * *
24375022 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 AGCGCCCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCATGTCTAA
24375082 GCATATGGAG
Statistics
Matches: 696, Mismatches: 202, Indels: 66
0.72 0.21 0.07
Matches are distributed among these distances:
157 12 0.02
158 216 0.31
159 323 0.46
160 9 0.01
161 1 0.00
162 3 0.00
163 9 0.01
164 3 0.00
165 1 0.00
166 1 0.00
167 2 0.00
168 10 0.01
169 3 0.00
172 91 0.13
173 11 0.02
174 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
CGACAGCACGCAAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTCA
GCGCCCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCATGTCTAAACCCCA
GTCGGACCGAGGGTTGTGGCAGCGGGAC
Found at i:24374516 original size:317 final size:318
Alignment explanation
Indices: 24373933--24375083 Score: 1224
Period size: 317 Copynumber: 3.6 Consensus size: 318
24373923 CCCAGTCTAA
* * * **
24373933 GCATACAGAGTTCATTCCCAGTTTAAGATCAAACCGGACCGAGGG-TAGCAATAGCAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTAGCGGTAGCAGGATCGAC
* * * **
24373997 AGCACGCAA-GGGGGACCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGC-GAAGC
66 AGCACGCAATGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTG-AGC
* * * *
24374060 GCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCTATGTCTAAACCCCAGT
130 ACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGT
* * * * *
24374125 CGGATCGAGGGTTGTGGCAGCGGGGCCGACAGCACACAGAGGGGGACCGGGTCGATCCCCAGCTT
195 CGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGCTCGAT-CCCGGCTT
* * *
24374190 GCCCATTATGCCTTTTCGACCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAT
259 GCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAT
* * *
24374250 GCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTA-CGGTAGCA-GATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTAGCGGTAGCAGGATCGAC
* * * *
24374313 AGCACGCAATGGAGGATCGGGTCGATCCCCGACTTACGGATTCTGCCTCTCCGATCGACTGAGCA
66 AGCACGCAATGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCA
* *
24374378 CCCGTACGCCCGTTTCGTGGTTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTC
131 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTC
* * * * * *
24374443 GGACCGAGGGTTGTGACAGTGGGACAGGCAGCACGTAGAGGGGGATCGGCTCGATCCTCGGCTTG
196 GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGCTCGATCC-CGGCTTG
* * * *
24374508 CGCATTATGCCTCTTCGGCCGGCTCAGTGCCCACACACTCGTTTCATGGGTTGACTTAT
260 CGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAT
* ** ** * * ** *
24374567 GCATACGGAGTTCATTCCTGGTCTAAGCATACGGAGTTC-ATTCCTAGTCTAAGATCGGGTCAGA
1 GCATACAGAGTTCATTCCCAGTCTAAG-AT-C-GA-ACCGA-ACCGAGGGTTAG--C-GGT-AG-
* * ** ** * * * * * *
24374631 CCGAGGGTTACGGCAGCACATAA-GGGGGATCGGACCGATCCCTGGCTTGCACATTTTACCTCTT
56 -C-A-GGAT-CGACAGCACGCAATGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTC
* * * * *
24374695 CGGTTGGTTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGTATAGGGAGCTCATTCCATG
117 CGATCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATG
* * *
24374760 TATAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGAAC
182 TCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCG-GC
* * * *
24374825 -CGATCCCTGGCTTGCGCATTTTGCCTCTTCGGCCGGCTCAACACTCGCACGCTCATTTCATGGG
246 TCGATCCC-GGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTTCATGGG
24374889 TTGACTTAT
310 TTGACTTAT
* * * * * * *
24374898 GCATACGGAGTTCATTCCCAGCCTAAGATCGAACCAAACTGAGGGTTA-CGGCAGTAGGATTGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTAGCGGTAGCAGGATCGAC
* * * * * * * *
24374962 AGCACGC-AGGGGGGATCGGGTTGATCCCTGGCTTGTGCATTCTGCCTCTCTGATCGGCTAAGCG
66 AGCACGCAATGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCA
* * *
24375026 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
131 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGC
24375084 ATATGGAGCT
Statistics
Matches: 679, Mismatches: 131, Indels: 48
0.79 0.15 0.06
Matches are distributed among these distances:
316 19 0.03
317 374 0.55
318 8 0.01
319 2 0.00
320 2 0.00
321 7 0.01
322 2 0.00
323 2 0.00
324 2 0.00
325 3 0.00
326 2 0.00
327 6 0.01
328 4 0.01
329 2 0.00
330 3 0.00
331 230 0.34
332 11 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (318 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTAGCGGTAGCAGGATCGAC
AGCACGCAATGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCA
CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGTC
GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGCTCGATCCCGGCTTGC
GCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAT
Found at i:24374597 original size:26 final size:26
Alignment explanation
Indices: 24374567--24374619 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24374557 GTTGACTTAT
*
24374567 GCATACGGAGTTCATTCCTGGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
24374593 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
24374619 G
1 G
24374620 ATCGGGTCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:24375096 original size:26 final size:26
Alignment explanation
Indices: 24375056--24375108 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24375046 GTTGGCTTAG
*
24375056 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
*
24375082 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
24375108 G
1 G
24375109 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:24375828 original size:26 final size:26
Alignment explanation
Indices: 24375778--24375829 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
24375768 GTTGACTTAG
* *
24375778 GCATACGGAGTACATCCCCAGTCTAA
1 GCATACGGAGTACATCACCAATCTAA
* *
24375804 GCATACGGAGTTCATTACCAATCTAA
1 GCATACGGAGTACATCACCAATCTAA
24375830 AATCGGATCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTACATCACCAATCTAA
Found at i:24376641 original size:26 final size:26
Alignment explanation
Indices: 24376601--24376653 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24376591 GTTGGGTTAG
*
24376601 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGCTCATTCCTA-GTCTAA
*
24376627 GCATATGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCTAGTCTAA
24376653 G
1 G
24376654 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCTAGTCTAA
Found at i:24377664 original size:158 final size:157
Alignment explanation
Indices: 24377250--24377666 Score: 415
Period size: 158 Copynumber: 2.6 Consensus size: 157
24377240 TACCACCCGT
* * * * *
24377250 TCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCTCGCACGCCCGTTTCATCGG
1 TCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * * *** *
24377315 TTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCG
66 TTGGCTTAGTCATACGGAGTTCATTCCA-GTCTAAGACCCAACCGGACCGAGGGTTCCAGCAGCA
** * *
24377380 GGACCGGTAGTATACAGAAGGGTCCGAG
130 GGACCGACAGCATACAGAAGGGACCGAG
* * * ** * *
24377408 -CTGATCCCCGGCTTGCGCATTATGACTCTTCGGTCGGCTCAGCGTGCGCATGCTTGTTTCGTGG
1 TC-GATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * * **
24377472 GTTGACTTA-TGCATACGGAGTGCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTCCAGCAG
65 GTTGGCTTAGT-CATACGGAGTTCATT-CCAGTCTAAGACCCAACCGGACCGAGGGTTCCAGCAG
* * * ** *
24377536 TAGGATCGACAGCATGCAGGGGGGACCGGG
128 CAGGACCGACAGCATACAGAAGGGACCGAG
* * *
24377566 TCGATCCCCGGGTTGCGCATTATGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
24377631 TTGGCTTAGTTATACGGAGTTCATTGCAGGTCTAAG
66 TTGGCTTAGTCATACGGAGTTCATTCCA-GTCTAAG
24377667 CATACAGAGC
Statistics
Matches: 205, Mismatches: 48, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 197 0.96
159 5 0.02
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.24
Consensus pattern (157 bp):
TCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGGCTTAGTCATACGGAGTTCATTCCAGTCTAAGACCCAACCGGACCGAGGGTTCCAGCAGCAG
GACCGACAGCATACAGAAGGGACCGAG
Found at i:24378403 original size:26 final size:26
Alignment explanation
Indices: 24378364--24378416 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24378354 GTTGACTTAG
*
24378364 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
24378390 GCATACAGATTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24378416 G
1 G
24378417 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24378762 original size:26 final size:26
Alignment explanation
Indices: 24378732--24378784 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24378722 GTTGACTTAG
*
24378732 GCATAT-AGAGTTCATCCCCAGTCTAA
1 GCATATGA-AGTTCATCCCCAATCTAA
*
24378758 GCATATGAAGTTCATTCCCAATCTAA
1 GCATATGAAGTTCATCCCCAATCTAA
24378784 G
1 G
24378785 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAATCTAA
Found at i:24379004 original size:368 final size:368
Alignment explanation
Indices: 24378313--24379020 Score: 886
Period size: 368 Copynumber: 1.9 Consensus size: 368
24378303 TGCACATCCT
** * * *
24378313 GCCTCTCTGGTTGGCTGAGTGCCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCTGGCCGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA
* * * *
24378378 TCCCCAGTCTAAGCATACAGATTTCATTCCTAGTCTAAGATCAGACTGGATCGAGGGTTACGACA
66 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTACGACA
** * * ** * * * *
24378443 GTAGGATCGATAGCACGCAGGTGGGATCAGGCTGATCCTTGGCTTGCGCATTCTGCCTCTCCGGC
131 ACAGGATCGACAGCACGCAGGGGGGATCAGGCCAATCCTCGACTTGCGCAATCTGCATCTCCGGC
* * *
24378508 TGGCTGAGCGCCTGCATGCTCATTTCGTAGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTA
196 TGGCTGAGCGCCCGCATGCTCATTTCGTAGGTTGGCTTAGGCATACAGAGTACATTCAACGTCTA
* * * *
24378573 AGCCCCAGCCGAATCGAGGGTTGTGGCGGTAGGATCGGCAGCGGGATAGACAGCACACAGAGGGG
261 AGCCCCAGCCGAATCGAGGGTTGTGGCAGCAGGATCGACAGCGAGATAGACAGCACACAGAGGGG
24378638 GACCAGGCTGATCCCTGACTTACGCATTATGCCTCTCCGGCTG
326 GACCAGGCTGATCCCTGACTTACGCATTATGCCTCTCCGGCTG
* *
24378681 GCCTCTCTGGCCGGTTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATATAGAGTTCA
1 GCCTCTCTGGCCGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA
* * ** *
24378746 TCCCCAGTCTAAGCATA-TGAAGTTCATTCCCAATCTAAGATCAGACCGGATCTAGGGTTGTGGC
66 TCCCCAGTCTAAGCATACAG-AGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTACGAC
* * * * *
24378810 AACAGGATCGGCAGCACGTAGGGGGGAAT-GGGCCAATCCTCGACTTGCGCAATCTTCATCTCCA
130 AACAGGATCGACAGCACGCAGGGGGG-ATCAGGCCAATCCTCGACTTGCGCAATCTGCATCTCCG
* * ** * * *
24378874 G-TCGGTTGAGTGCCCGTGTGCAT-GTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCAACG
194 GCT-GGCTGAGCGCCCGCATGC-TCATTTCGTAGGTTGGCTTAGGCATACAGAGTACATTCAACG
* * *
24378937 TCTAAGCCCCAGCC-AGATCGAGGGTTGTGGCAGCAGGATCGACAGCGAGATCGACAGCTCGCAG
257 TCTAAGCCCCAGCCGA-ATCGAGGGTTGTGGCAGCAGGATCGACAGCGAGATAGACAGCACACAG
* *
24379001 AGGGGGACCGGGTTGATCCC
321 AGGGGGACCAGGCTGATCCC
24379021 CAGCTTGTGC
Statistics
Matches: 285, Mismatches: 50, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
367 3 0.01
368 279 0.98
369 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (368 bp):
GCCTCTCTGGCCGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA
TCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTACGACA
ACAGGATCGACAGCACGCAGGGGGGATCAGGCCAATCCTCGACTTGCGCAATCTGCATCTCCGGC
TGGCTGAGCGCCCGCATGCTCATTTCGTAGGTTGGCTTAGGCATACAGAGTACATTCAACGTCTA
AGCCCCAGCCGAATCGAGGGTTGTGGCAGCAGGATCGACAGCGAGATAGACAGCACACAGAGGGG
GACCAGGCTGATCCCTGACTTACGCATTATGCCTCTCCGGCTG
Found at i:24380004 original size:26 final size:26
Alignment explanation
Indices: 24379968--24380018 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24379958 TGACTTAGGC
24379968 ATACGGAGTTCA-TCCCTAGTCTAAGT
1 ATACGGAGTTCATTCCC-AGTCTAAGT
24379994 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
24380019 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:24380345 original size:26 final size:26
Alignment explanation
Indices: 24380309--24380361 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24380299 GTTGACTTAG
24380309 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
24380335 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24380361 G
1 G
24380362 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24380586 original size:343 final size:338
Alignment explanation
Indices: 24379915--24380678 Score: 784
Period size: 343 Copynumber: 2.2 Consensus size: 338
24379905 TCTCCGATCG
* * * * ** *
24379915 GCCTCTCCGGGCAGCTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTTCGGCCAGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
* * * *
24379980 TCCCTAGTCTAAGTATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGCA
* * *
24380045 GCACACAGAGGGGACCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCTAGCCAGCTGAGCGCT
131 GCACACAGAGGGGACCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCGAGCCAGCTGAGCACC
* * * ***
24380110 CGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTATATTCCAAGTCTAAGCCCCAGCTGG
196 CGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCAAGTCTAAGCCCCAGCCAA
* *
24380175 ACCGAGGGTTGTCGCAGCAGGACCGGCAGTGGGATCGTCAGCACGCAGAGGGGCACTAGGCTGAT
261 ACCGAGGCTTGTCG-AGCAGGA-CGGCACT-GGA--GTCAGCACGCAGAGGGGCACTAGGCTGAT
24380240 CCCC-AGCTTACGCATTAT
321 CCCCGA-CTTACGCATTAT
* * * * *
24380258 GCCT-TTCCGG-TAGGCTGAGTGCCTGTACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTT
1 GCCTCTT-CGGCCA-GCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTT
*
24380321 CATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAG
64 CATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT---G
* * * * *
24380386 TAGCAAGATCGGCAGCATGTAGGGGGGACCGGGCCGATCCTCGGCTTACGCATTTTGCCTCTCCG
126 TAGC-AG--C-ACA-CA-G-A--GGGGACCGGGCCAATCCCCGACTTACGCATTCTGCCTCT-CG
* * * * *
24380451 A-TCAGTTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATA-GAGAGCT-CATT-CAA
181 AGCCAGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACG-GAG-TACATTCCAA
* *
24380512 TGTCTAAGCCCCAGCCAAACCGAGGCTTGT-G-GCA-G-CGGGACT-G-GT-AGCACGTAGAGGG
244 -GTCTAAGCCCCAGCCAAACCGAGGCTTGTCGAGCAGGACGGCACTGGAGTCAGCACGCAGAGGG
* * *
24380570 GGA-TCGGGTCGATCCCCGACTTACGCATTAT
308 GCACTAGGCT-GATCCCCGACTTACGCATTAT
*
24380601 GCCTCTTCGGCCAGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTATGCATACAGAGTTCA
1 GCCTCTTCGGCCAGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
* *
24380666 TTCCCAATCTAAG
66 TCCCCAGTCTAAG
24380679 ATCGAACCAG
Statistics
Matches: 351, Mismatches: 48, Indels: 44
0.79 0.11 0.10
Matches are distributed among these distances:
342 6 0.02
343 205 0.58
344 6 0.02
346 4 0.01
347 3 0.01
349 6 0.02
350 2 0.01
351 3 0.01
352 4 0.01
353 1 0.00
354 5 0.01
355 103 0.29
356 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (338 bp):
GCCTCTTCGGCCAGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTAGCA
GCACACAGAGGGGACCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCGAGCCAGCTGAGCACC
CGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCAAGTCTAAGCCCCAGCCAA
ACCGAGGCTTGTCGAGCAGGACGGCACTGGAGTCAGCACGCAGAGGGGCACTAGGCTGATCCCCG
ACTTACGCATTAT
Found at i:24381775 original size:25 final size:26
Alignment explanation
Indices: 24381729--24381778 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
24381719 GACTTAGGCT
24381729 TACGGAGTTCATCTCCAGTCTAAGAA
1 TACGGAGTTCATCTCCAGTCTAAGAA
*
24381755 TACGGAGTTTAT-TCCAGTCTAAGA
1 TACGGAGTTCATCTCCAGTCTAAGA
24381779 TCAGACCAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATCTCCAGTCTAAGAA
Found at i:24381910 original size:183 final size:184
Alignment explanation
Indices: 24381469--24381927 Score: 505
Period size: 183 Copynumber: 2.5 Consensus size: 184
24381459 ACCACCCGTT
* * * *
24381469 CGATCCCCGGCTTGCGCATCCTGCC-TCCCTGGTCGACTGAACGCCCGCATGCTCGTTTCATGGG
1 CGATCCCCGGCTTGTGCATTCTGCCTTTCC-GGTCGACTGAGCGCCCGCATGCTCGTTTCATGGG
* * * * *
24381533 TTGACTTAGGCATACAGAGTTCATCCCCAGTGTAAACATATGGAGTTCATTCCGAGTCTAAGGTC
65 TTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAACATACGGAGTTCATTCCGAGTCTAAGATC
* * *** * * * **
24381598 GGACCGGATCGAGGGTTACGAAAGCAAGATCGGTAGCACACAGGGGTGATCGGGT
130 AGACCAGATCGAGGGTTACGAAAGCAAGATCAACAACACACAGGGGAGACCGGAC
* * ** * * * ** * *
24381653 CGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGGTTGAGCACTCACATATTCATTTCATTGGT
1 CGATCCCCGGCTTGTGCATTCTGCCTTTCCGGTCGACTGAGCGCCCGCATGCTCGTTTCATGGGT
* *
24381718 TGACTTAGGCTTACGGAGTTCATCTCCAGTCTAAGA-ATACGGAGTTTATTCC-AGTCTAAGATC
66 TGACTTAGGCATACGGAGTTCATCTCCAGTCTAA-ACATACGGAGTTCATTCCGAGTCTAAGATC
** *
24381781 AGACCAGATCGAGGGTTGA-GGCAGCAAGATCAACAACACGCAGGGGAGACCGGAC
130 AGACCAGATCGAGGGTT-ACGAAAGCAAGATCAACAACACACAGGGGAGACCGGAC
* *
24381836 CGATCCCCGGCTTGTGCATTCTGCCTTTTCGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGTGCATTCTGCCTTTCCGGTCGACTGAGCGCCCGCATGCTCGTTTCATGGGT
* *
24381901 TGGCTTAGGCATACGGAGTACAT-TCCA
66 TGACTTAGGCATACGGAGTTCATCTCCA
24381928 CATCTAAGCC
Statistics
Matches: 221, Mismatches: 51, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
182 4 0.02
183 122 0.55
184 92 0.42
185 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (184 bp):
CGATCCCCGGCTTGTGCATTCTGCCTTTCCGGTCGACTGAGCGCCCGCATGCTCGTTTCATGGGT
TGACTTAGGCATACGGAGTTCATCTCCAGTCTAAACATACGGAGTTCATTCCGAGTCTAAGATCA
GACCAGATCGAGGGTTACGAAAGCAAGATCAACAACACACAGGGGAGACCGGAC
Found at i:24382411 original size:158 final size:158
Alignment explanation
Indices: 24382247--24382619 Score: 399
Period size: 158 Copynumber: 2.4 Consensus size: 158
24382237 TGGCTGAGCA
* * * * * * * * *
24382247 CCCGCACACCCATTTCATGGGTTGGGTTAGGCATAGGGAGCTCATTCCATTTTTAAGCCCCAACC
1 CCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACC
*** ** * * *
24382312 AGATCGAGGGTTGTGGCAATGGGACCGACAGCATGCAGAGAGGGATCGGGTCGATCTTCGGCTTG
66 AGATCGAGGGTTGCCACAACAGGACCGACAGCACGCAGAG-GGGACCGGGTCGATCCTCGGCTTG
*
24382377 CGCATTATGCCTCTTCAGTC-GTTCAGTG
130 CGCATTATGCCTCTCCAGTCGGTTCAGTG
* * * * * **
24382405 CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAGATCGGAC
1 CCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCCAAC
* * * *
24382469 CGGATCGAGGGTTGCCACAGCAGGATCGGCAGCACGCAGAGGGGACCGGGTCGATCCTCGGCTTG
65 CAGATCGAGGGTTGCCACAACAGGACCGACAGCACGCAGAGGGGACCGGGTCGATCCTCGGCTTG
* * *
24382534 TGCATTCTGCCTCTCCAGTCGGTTGAGTG
130 CGCATTATGCCTCTCCAGTCGGTTCAGTG
* * *
24382563 CTCGCACACTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 CCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
24382620 CATATGGAGC
Statistics
Matches: 173, Mismatches: 39, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
157 42 0.24
158 128 0.74
159 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (158 bp):
CCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACC
AGATCGAGGGTTGCCACAACAGGACCGACAGCACGCAGAGGGGACCGGGTCGATCCTCGGCTTGC
GCATTATGCCTCTCCAGTCGGTTCAGTG
Found at i:24383033 original size:25 final size:26
Alignment explanation
Indices: 24382999--24383050 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
24382989 ATTGACTTAG
*
24382999 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
24383024 GCATATGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
24383050 G
1 G
24383051 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:24383217 original size:26 final size:26
Alignment explanation
Indices: 24383181--24383233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24383171 GTTAACTTAG
24383181 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24383207 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24383233 G
1 G
24383234 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24383348 original size:183 final size:182
Alignment explanation
Indices: 24382959--24383390 Score: 494
Period size: 183 Copynumber: 2.4 Consensus size: 182
24382949 CCTCTCTGGT
*
24382959 CGGCTGAGTGCCC-CTACGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATCCCAGTCTA
1 CGGCTGAGTGCCCGC-ACGCTCGTTTCGTGGATTAACTTAGGCATACGGAGTTCATCCCAGTCTA
** *
24383023 AGCATATGGAGTTCATTCCCAGTATAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGAC
65 AGCATATGGAGTTCATTCCCAGTATAAGATCAGACCGGATCGAGGGTTGCAACAGCAAGATCGAC
* * * * *
24383088 AACACGCAGGAGGACCGGGCCGATCCCCGACTTGTGCATTTTGCCTCTCCGAC
130 AACACGCAGGAGGACCGAGCCGAGCCCCGACTTGCGCATTCTGACTCTCCGAC
* * ** * *
24383141 CAGTTGAGCACCCGCACACTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGATTAACTTAGGCATACGGAGTTCAT-CCCAGTCTA
* **
24383206 AGCATATGGAGTTCATTCCCAGTCTAAGATCAGATTGGATCGAGGGTTGCAACAGCAAGATCGA-
65 AGCATATGGAGTTCATTCCCAGTATAAGATCAGACCGGATCGAGGGTTGCAACAGCAAGATCGAC
* * * * * * * *
24383270 ATGCATGTAGGGGGGACCGAGCTGAGCCCCGGCTTGCGCATTCT-ACTTTTCGAC
130 A-ACACGCA-GGAGGACCGAGCCGAGCCCCGACTTGCGCATTCTGACTCTCCGAC
* ** * * * *
24383324 CGGCTGAGTGCCCGCATGCTCGTTTCGTGG-TTGGCCTAGTCATACGGAGTACATTCCATGTCTA
1 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGATTAACTTAGGCATACGGAGTTCATCCCA-GTCTA
24383388 AGC
65 AGC
24383391 CCTAGCCGGA
Statistics
Matches: 207, Mismatches: 38, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
181 3 0.01
182 74 0.36
183 103 0.50
184 27 0.13
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (182 bp):
CGGCTGAGTGCCCGCACGCTCGTTTCGTGGATTAACTTAGGCATACGGAGTTCATCCCAGTCTAA
GCATATGGAGTTCATTCCCAGTATAAGATCAGACCGGATCGAGGGTTGCAACAGCAAGATCGACA
ACACGCAGGAGGACCGAGCCGAGCCCCGACTTGCGCATTCTGACTCTCCGAC
Found at i:24383564 original size:26 final size:26
Alignment explanation
Indices: 24383534--24383586 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24383524 GTTGACTTAG
24383534 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCCA-TCTAA
24383560 GCATACGGAGTTCATTCCCCATCTAA
1 GCATACGGAGTTCATTCCCCATCTAA
24383586 G
1 G
24383587 AATGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCCATCTAA
Found at i:24383637 original size:353 final size:352
Alignment explanation
Indices: 24383109--24384114 Score: 1003
Period size: 353 Copynumber: 2.8 Consensus size: 352
24383099 GGACCGGGCC
* * * * * *
24383109 GATCCCCGACTTGTGCATTTTGCCTCTCCGACCAGTTGAGCACCCGCACACTCGTTTCGTGGGTT
1 GATCCTCGACTTGCGCATTATGCCTTTCCGGCCAGCTGAGCACCCGCACACTCGTTTCGTGGGTT
* * *
24383174 AACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAG
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGA-
* * * * * * *
24383239 ATTGGATCGAGGGTTGCAACAGCAAGA-TCGAATGCATGTAGGGGGGACCGAGCTGAGCCCCGGC
130 ATTGGATCGAGGGTTGCGATAGCAGGATTGGAA-GCACGTAGGGGGGATCG-GCTGATCCCCGGC
* * * * *
24383303 TTGCGCATTCTACTTTTCGACCGGCTGAGTGCCCGCATGCTCGTTTCGT-GGTTGGCCTAGTCAT
193 TTGCGCATTCTACTTTTCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
* * * * * * * * *
24383367 ACGGAGTACATTCCATGTCTAAGCCCTAGCCGGACCTAGGGTTGTGGCAGCAGGATCAGCAGTGG
258 ACGGAGTATATTCCATGTCTAAGCCCCAGCCAGACCGACGGTTGTGGCAGCAAGACCAGCAGCGA
** * * * **
24383432 GATCGGTAGCATGCATTGTGGGATCGGGTT
323 GATCGGTAGCATGCAGAGGGGGAACAGACT
* * * *
24383462 GATCCTCGACTTACGCATTATGCCTTTCCGGCCAGCTGAGCTCTCGCACACTCGTTTCATGGGTT
1 GATCCTCGACTTGCGCATTATGCCTTTCCGGCCAGCTGAGCACCCGCACACTCGTTTCGTGGGTT
24383527 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCCA-TCTAAGAATG
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT-CCCAGTCTAAG-ATG
*** * * **
24383591 AACCAGATCGAGGGTTGCGATAGTAGGATTGGCAGCACACAGGGGGGATCGGTCTGATCCCCGGC
129 AATTGGATCGAGGGTTGCGATAGCAGGATTGGAAGCACGTAGGGGGGATCGG-CTGATCCCCGGC
* * * * ** ** * **
24383656 TTGCGTATTCTGCCTCTCCGGTCGATTGAACGCTTGCACGCTCATTTCGTGGGTTGGCTTAGGCA
193 TTGCGCATTCT-ACTTTTCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCA
* * * * * *
24383721 TGCGAAGTATATTCCACGTCTAAGCCCCAGCCAGATCGACGGTTGTGGTAGCAAGACCAGTAGCG
257 TACGGAGTATATTCCATGTCTAAGCCCCAGCCAGACCGACGGTTGTGGCAGCAAGACCAGCAGCG
24383786 AGATCGGTAGCATGCAGAGGGGGAACAGACT
322 AGATCGGTAGCATGCAGAGGGGGAACAGACT
* * ** *
24383817 GATCCTCGGCTTGCGCATTATGCCTTTCCGACCGGCCTCTCCGACCGGCTGAGCGCCCATACGCT
1 GATCCTCGACTTGCGCATTATGCCTTT----CCGG-----CC-A---GCTGAGCACCCGCACACT
* *
24383882 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCCC
53 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* ** * *
24383947 AGTCTAAGATCGGATTGGATCGAGGGTTATGGTAGCAGGA-TCGATAGCACGTAGGGGGGGATCG
118 AGTCTAAGAT-GAATTGGATCGAGGGTTGCGATAGCAGGATTGGA-AGCACGTA-GGGGGGATC-
* * * * *
24384011 GGTTGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACACTCATTTCGTG
179 GGCTGATCCCCGGCTTGCGCATTCTACTTTTC-GACCGGCTGAGCGCCCGCACGCTCATTTCGTG
* *
24384076 GGTTGGCTTAGGCATACGGATTTTATTCCATGTCTAAGC
243 GGTTGGCTTAGGCATACGGAGTATATTCCATGTCTAAGC
24384115 ATACAGAGCT
Statistics
Matches: 521, Mismatches: 107, Indels: 34
0.79 0.16 0.05
Matches are distributed among these distances:
352 1 0.00
353 162 0.31
354 35 0.07
355 111 0.21
359 4 0.01
364 2 0.00
365 1 0.00
367 8 0.02
368 107 0.21
369 88 0.17
370 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (352 bp):
GATCCTCGACTTGCGCATTATGCCTTTCCGGCCAGCTGAGCACCCGCACACTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGAA
TTGGATCGAGGGTTGCGATAGCAGGATTGGAAGCACGTAGGGGGGATCGGCTGATCCCCGGCTTG
CGCATTCTACTTTTCGACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
GAGTATATTCCATGTCTAAGCCCCAGCCAGACCGACGGTTGTGGCAGCAAGACCAGCAGCGAGAT
CGGTAGCATGCAGAGGGGGAACAGACT
Found at i:24383933 original size:26 final size:26
Alignment explanation
Indices: 24383902--24383954 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24383892 GTTGACTTAG
*
24383902 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
24383928 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
24383954 G
1 G
24383955 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:24385050 original size:26 final size:26
Alignment explanation
Indices: 24385014--24385066 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24385004 GTTGACTTAG
*
24385014 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24385040 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24385066 G
1 G
24385067 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24385304 original size:138 final size:135
Alignment explanation
Indices: 24385040--24385331 Score: 372
Period size: 138 Copynumber: 2.1 Consensus size: 135
24385030 TCCAGTCTAA
* * *
24385040 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGCAGCAACACGTAGGGGGGACTGGGCCGA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGCAGCAACACGCAGGGGGGACCGGGCCGA
* * * * *
24385105 TCCCTGGCTTGCGCATCCTGCCTCTCCGACCGACTAAGCACCCGCACGCTCATTTCGTGGGTTGA
66 TCCCTCGCTTGCGCATCATGCCCCTCCGACCGACTAAGCACCCGCACGCTCATTCCATGGGTTGA
24385170 CTTAG
131 CTTAG
24385175 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGCAG-AGGGATCACGCAGGGGGGGACCGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGCAGCA---A-CACGCA-GGGGGGACCGG
* * * * * * *
24385239 GCTGATCCC-CGCTTGCGCATTATGCCCCTCCGACTGGCTGAGCACCCGGACGCTCGTTCCATGG
61 GCCGATCCCTCGCTTGCGCATCATGCCCCTCCGACCGACTAAGCACCCGCACGCTCATTCCATGG
24385303 GTTGACTTAG
126 GTTGACTTAG
* *
24385313 GCATACGTAGTGCATTCCC
1 GCATACGGAGTTCATTCCC
24385332 GGTCTCAACC
Statistics
Matches: 135, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
134 1 0.01
135 39 0.29
137 1 0.01
138 76 0.56
139 18 0.13
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.21
Consensus pattern (135 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGCAGCAACACGCAGGGGGGACCGGGCCGA
TCCCTCGCTTGCGCATCATGCCCCTCCGACCGACTAAGCACCCGCACGCTCATTCCATGGGTTGA
CTTAG
Found at i:24387990 original size:26 final size:26
Alignment explanation
Indices: 24387960--24388012 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24387950 GTTCACATAG
24387960 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24387986 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24388012 G
1 G
24388013 ATCAAATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24388234 original size:158 final size:156
Alignment explanation
Indices: 24387986--24388480 Score: 449
Period size: 158 Copynumber: 3.1 Consensus size: 156
24387976 CCCAGTCTAA
* * * * * * * *
24387986 GCATACAGAGTTCATTCCCA-GTCTAAGATCAAATTGGACTGAGGGTTGCGGCAGCAGGATCGGT
1 GCATACGGAGTTCATT-CCATGACTAAGACCACACTGGACAGAGGGTTGTGGCAGCAAGATCGGT
* ** * * *
24388050 AGCACGCAAGAGGGATCGAACCGATCCCCGGCTTGCGTATTTTGCCTCTCCAGTCGACTGAGCGC
65 AGCACGCAAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCC-GTCG-CTGAGCGC
* * * *
24388115 CTGCTCGCCCATTTCGTGGATTGGCTTAG
128 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * * * *
24388144 GCATAGGGAGATCATTCCATGACTAAG-CCCCACTGGACCGAGGGTTGTGGCAGCAAGACCGGTA
1 GCATACGGAGTTCATTCCATGACTAAGACCACACTGGACAGAGGGTTGTGGCAGCAAGATCGGTA
** * *
24388208 GCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGTACATTATGCCTCTTCGGTCGGCTCAGCGC
66 GCACGCA-AGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTC-TCCGTC-GCTGAGCGC
* * * * *
24388273 CCACACACTCGTTTCGTGGGTTGACTTAT
128 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * * * * * **
24388302 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGAACAGAGGGTTGTGGCATCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGACTAAGACCACACTGGACAGAGGGTTGTGGCAGCAAGATCGGT
* * * * *
24388366 AGCACACAAGGGGGACCGGG-TCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCTGCTGAGCG
65 AGCACGCAAGGGGGATCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTCCG-TC-GCTGAGCG
*
24388430 CCCGCACGCCTGTTTCGTGGGTTGGCTTAG
127 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
*
24388460 GCATATGGAGTTCATTCCATG
1 GCATACGGAGTTCATTCCATG
24388481 TCTAGGCATA
Statistics
Matches: 267, Mismatches: 61, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 46 0.17
158 182 0.68
159 39 0.15
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGACTAAGACCACACTGGACAGAGGGTTGTGGCAGCAAGATCGGTA
GCACGCAAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGTCGCTGAGCGCCCG
CACGCCCGTTTCGTGGGTTGGCTTAG
Found at i:24389169 original size:26 final size:26
Alignment explanation
Indices: 24389133--24389210 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
24389123 TAATTTAGGC
*
24389133 ATATGGAGTTCATCCCAAGTCTAAGA
1 ATATAGAGTTCATCCCAAGTCTAAGA
24389159 ATATAGAGTTCATCCCAAGTCTAAGA
1 ATATAGAGTTCATCCCAAGTCTAAGA
24389185 ATATAGAGTTCATTCCC-AGTCTAAGA
1 ATATAGAGTTCA-TCCCAAGTCTAAGA
24389211 TCAGATCAGA
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 46 0.92
27 4 0.08
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (26 bp):
ATATAGAGTTCATCCCAAGTCTAAGA
Found at i:24391886 original size:26 final size:26
Alignment explanation
Indices: 24391849--24391901 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24391839 GTTGATTTAG
*
24391849 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
24391875 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24391901 G
1 G
24391902 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24392051 original size:368 final size:362
Alignment explanation
Indices: 24390728--24392086 Score: 1357
Period size: 368 Copynumber: 3.7 Consensus size: 362
24390718 TGACTGAGTG
* * * **
24390728 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCACACGGAGTTCATCCCCAGTCTAAGCATATGGA
1 CCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGA
* * * * ** * * *
24390793 GTTCATT-CCTGATCTAAGATCGAATCGGATCAAGGGTTACGATAGCAGGATCGGTAACACATAG
66 GTTCATTCCCAG-TCTAAGATCGACT-GGATCGAGGGTTGCGGCAGCAAGATCGGCAACACGTAG
* ** ** *
24390857 GGGGGACCAGACCAATCCCCGGCTTGCCCATTCTGCCTCTCTGACCGGTTGAGCGCCCGCACGCT
129 GGGGGACCAGACCGATCCCAAGCTTGAGCATTCTGCCTCTCTGACCGGTTGAGCGCCCGCACGCC
* ** * *
24390922 TGTTTCATGGGTTACCTTGGGCATACA-GAGTACATTCCACGTCTAAGCCCCAGCC-AGACTGAG
194 CGTTTCATGGGTTGGCTTAGGCATA-AGGAGTACATTCCACGTCTAAGCCCCAGCCGA-ACCGAG
* *
24390985 GGTTGTGGTAGGAGGACCGGCAGCGGGATCGGTAGCAAGCAGAGAGGGATCAGGCTGATCCCCGG
257 GGTTGTGGCAGGA-GAACGGCAGCGGGATCGGTAGCAAGCAGAGAGGGATCAGGCTGATCCCCGG
* ** *
24391050 C-T-TGC-----GCAT-TATG-CCTCTCCGGTCGATTGAGCA
321 CTTATGCATTATGCCTCTATGCCCTCTCCGACCGGTTGAGCA
* * *
24391083 CCCGCACACTCGTTTCGTGGGTTGAATTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAGA
1 CCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGA
* * * * * *
24391148 GTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGTTTGCGGCAGCAAGATTGGCAACATGTAGA
66 GTTCATTCCCAGTCTAAGATC-GACTGGATCGAGGGTTGCGGCAGCAAGATCGGCAACACGTAGG
* * * * * * * * * * *
24391213 GGGGATCGGGCTGATCCCAAGCTTGTA-CATTCTGTCTTTCAGGCCGGTTGAGTGCCCGTACACC
130 GGGGACCAGACCGATCCCAAGCTTG-AGCATTCTGCCTCTCTGACCGGTTGAGCGCCCGCACGCC
* * * * * *
24391277 CGTTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAACCCCAGTCGGACCGAGGG
194 CGTTTCATGGGTTGGCTTAGGCATAAGGAGTACATTCCACGTCTAAGCCCCAGCCGAACCGAGGG
* ** * * * *
24391342 TTATGATAGTAGAACTGGCAGCGGGATCGGTAGCATGCAGAGGGGGA-CTAGGCTGATCCCCGAC
259 TTGTGGCAGGAGAAC-GGCAGCGGGATCGGTAGCAAGCAGAGAGGGATC-AGGCTGATCCCCGGC
* * * * *
24391406 TTACGCATTATGCCTCTCCAGTCGGCCTCACC-ATCCGGCTGAGCG
322 TTATGCATTATGCCTCT--A-T-GCCCTCTCCGA-CCGGTTGAGCA
* ** * *
24391451 CCTGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAAA
1 CCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGA
* * * * **
24391516 GTTCACTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGGCAGCAGGATCGACAGCATTTAGG
66 GTTCATTCCCAGTCTAAGATCG-ACTGGATCGAGGGTTGCGGCAGCAAGATCGGCAACACGTAGG
** * * ** * * *
24391581 GGGGACCAGACCGATCCCCGGCTT-ACGCATTTTGCCTTTCTGACCGACTGAGCACCCGCATGCT
130 GGGGACCAGACCGATCCCAAGCTTGA-GCATTCTGCCTCTCTGACCGGTTGAGCGCCCGCACGCC
* * *
24391645 CGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAACCGAACCGAGGA
194 CGTTTCATGGGTTGGCTTAGGCATAAGGAGTACATTCCACGTCTAAGCCCCAGCCGAACCGAGGG
* * *
24391710 TTGTGGCAGGAGAATCGGTAGCGGGATCGGTAGCAAGCAGAGAGGGATCGGGCTGATCCTCGGCT
259 TTGTGGCAGGAGAA-CGGCAGCGGGATCGGTAGCAAGCAGAGAGGGATCAGGCTGATCCCCGGCT
24391775 TATGCATTATGCCTCTATGGCCTACCTCTCCGACCGGTTGAGCA
323 TATGCATTATGCCTCTAT-G-C--CCTCTCCGACCGGTTGAGCA
* * * * *
24391819 CCCGCACACTCATTTCATGGGTTGATTTAGGCATACGAAGTTTATCCCCAGTCTAAGCATACGGA
1 CCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGA
* * *
24391884 GTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGTTTGCGGCAGCAAGATCGGCAGCACGCAGG
66 GTTCATTCCCAGTCTAAGATC-GACTGGATCGAGGGTTGCGGCAGCAAGATCGGCAACACGTAGG
*** * * *
24391949 GGGGATTGGGCCGATCCCAAGCTTGAGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGCCC
130 GGGGACCAGACCGATCCCAAGCTTGAGCATTCTGCCTCTCTGACCGGTTGAGCGCCCGCACGCCC
* * * * * *
24392014 ATTTCGTGGGTTGGCTTAGGGATAAGGAGCT-CATTCCATGTCTAAGCCTCAGCCGAATCGAGGG
195 GTTTCATGGGTTGGCTTAGGCATAAGGAG-TACATTCCACGTCTAAGCCCCAGCCGAACCGAGGG
24392078 TTGTGGCAG
259 TTGTGGCAG
24392087 CGGGATAGGC
Statistics
Matches: 808, Mismatches: 163, Indels: 53
0.79 0.16 0.05
Matches are distributed among these distances:
354 4 0.00
355 251 0.31
356 7 0.01
357 2 0.00
362 3 0.00
363 1 0.00
365 3 0.00
366 3 0.00
367 2 0.00
368 526 0.65
369 6 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (362 bp):
CCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGA
GTTCATTCCCAGTCTAAGATCGACTGGATCGAGGGTTGCGGCAGCAAGATCGGCAACACGTAGGG
GGGACCAGACCGATCCCAAGCTTGAGCATTCTGCCTCTCTGACCGGTTGAGCGCCCGCACGCCCG
TTTCATGGGTTGGCTTAGGCATAAGGAGTACATTCCACGTCTAAGCCCCAGCCGAACCGAGGGTT
GTGGCAGGAGAACGGCAGCGGGATCGGTAGCAAGCAGAGAGGGATCAGGCTGATCCCCGGCTTAT
GCATTATGCCTCTATGCCCTCTCCGACCGGTTGAGCA
Found at i:24392334 original size:156 final size:155
Alignment explanation
Indices: 24391875--24392374 Score: 449
Period size: 159 Copynumber: 3.2 Consensus size: 155
24391865 CCCAGTCTAA
* * * * * *
24391875 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGTTTGCGGCAGCAAGATCGGCA
1 GCATACAGAGTTCATTCCAAGTCTAAGATCAGAC-CGATCGAGGGTTGC-GCAGCAGGATCAGCA
* * * * ** *
24391940 GCACGCAGGGGGGATTGGGCCGATCCCAAGCTTGAGCATTCTGCCTCTCCGGCCGGTTGAGCGCC
64 GCACACA-GGGGGATCGGG-CGATCCCCAGCTTGAGCATTATGCCTCTCCGATCGGCTGAGCGCC
* *
24392005 CGCACGCCCATTTCGTGGGTTG-GCTTAG
127 CGCACGCTCATTTCATGGGTTGAGCTTAG
* * * * * *
24392033 GGATA-AGGAGCTCATTCCATGTCTAAGCCTCAG-CCGAATCGAGGGTTGTGGCAGCGGGAT-AG
1 GCATACA-GAGTTCATTCCAAGTCTAAG-ATCAGACCG-ATCGAGGGTTG-CGCAGCAGGATCA-
* * * * * **
24392095 GCAGCATGCAGAGGGAGATCGGGCTGATCCCC-GACTTGTGCATTATGACTCTTCGATCGGCCCA
61 GCAGCA--CACAGGGGGATCGGGC-GATCCCCAG-CTTGAGCATTATGCCTCTCCGATCGGCTGA
* *
24392159 GCGCCCGCACGCTCATTTCATTGGTTGAG-TTAT
122 GCGCCCGCACGCTCATTTCATGGGTTGAGCTTAG
* * *
24392192 GCATACAGAGTTCATTCCAAGTCTAAGATCAGACCAGACCGAGGGTTGCGTAGCAGGATCAACAG
1 GCATACAGAGTTCATTCCAAGTCTAAGATCAGACC-GATCGAGGGTTGCGCAGCAGGATCAGCAG
* * * *
24392257 CACATAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTTTGCCTCTCCGATCGACTGAGCGCCCG
65 CACACAGGGGGATCGGG-CGATCCCCAGCTTGAGCATTATGCCTCTCCGATCGGCTGAGCGCCCG
*
24392322 CACGCTCGTTTCATGGGTT-AGCTTAG
129 CACGCTCATTTCATGGGTTGAGCTTAG
*
24392348 GCATACGGAGTTCATT-CAATGTCTAAG
1 GCATACAGAGTTCATTCCAA-GTCTAAG
24392375 CATACGGAGC
Statistics
Matches: 272, Mismatches: 52, Indels: 38
0.75 0.14 0.10
Matches are distributed among these distances:
155 5 0.02
156 92 0.34
157 3 0.01
158 65 0.24
159 102 0.38
160 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (155 bp):
GCATACAGAGTTCATTCCAAGTCTAAGATCAGACCGATCGAGGGTTGCGCAGCAGGATCAGCAGC
ACACAGGGGGATCGGGCGATCCCCAGCTTGAGCATTATGCCTCTCCGATCGGCTGAGCGCCCGCA
CGCTCATTTCATGGGTTGAGCTTAG
Found at i:24392929 original size:26 final size:26
Alignment explanation
Indices: 24392879--24392931 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24392869 GTTGACTTAG
* * *
24392879 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAATCTAA
*
24392905 GCATACAGAGTTCATTCACAATCTAA
1 GCATACAGAGTTCATCCACAATCTAA
24392931 G
1 G
24392932 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAATCTAA
Found at i:24393270 original size:26 final size:26
Alignment explanation
Indices: 24393234--24393286 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24393224 GTTGACTTAG
24393234 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24393260 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24393286 G
1 G
24393287 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24393561 original size:159 final size:159
Alignment explanation
Indices: 24393348--24393763 Score: 512
Period size: 159 Copynumber: 2.6 Consensus size: 159
24393338 ACTGGGCCAT
* * * *
24393348 TCCCCGACTTGCGCATTCTGCCTCTCCGACCGGATGAGCACCCGCACGCCCGTTTCGTGGGTTGG
1 TCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGG
* * ***
24393413 CTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCAGGAC
66 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTACAGCAGCAGGAC
24393478 CGACAGCACATAGAGGGGGACCG-GACCGA
131 CGACAGCACATAGAGGGGGACCGAG-CCGA
* ** * * * *
24393507 TCCCCGGCTTGCGCATTATGCCTCTTTGGCCGGCTCAGCACCCGTACGCTCGTTTCATGGGTTGA
1 TCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGG
* * ****
24393572 CTTATGCATACGGAGTTCGTTCCTAT-TCTAAGATTGAACCAGACCGAGGGTTACAGCAGCAGGA
66 CTTAGGCATACGGAGTTCATTCC-ATGTCTAAGCCCCAACCAGACCGAGGGTTACAGCAGCAGGA
** * * *
24393636 TTGACAGCACGTAGGGGGGGACCGAGTCGA
130 CCGACAGCACATAGAGGGGGACCGAGCCGA
* * * * *
24393666 TCCCTGGCTTCCGCATTCTGCCTCTCCGATCGGCTGAGCTCCCGCACGCTCATTTCATGGGTTGG
1 TCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGG
24393731 CTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 CTTAGGCATACGGAGTTCATTCCATGTCTAAGC
24393764 ATACGGAGCT
Statistics
Matches: 212, Mismatches: 42, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
158 2 0.01
159 207 0.98
160 3 0.01
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.23
Consensus pattern (159 bp):
TCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGG
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTACAGCAGCAGGAC
CGACAGCACATAGAGGGGGACCGAGCCGA
Found at i:24393786 original size:26 final size:26
Alignment explanation
Indices: 24393736--24393788 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24393726 GTTGGCTTAG
* *
24393736 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24393762 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24393788 G
1 G
24393789 ATTTTGAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24394498 original size:26 final size:26
Alignment explanation
Indices: 24394469--24394521 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24394459 GTTGACTTAG
* * *
24394469 GCATACGGAGTTGATCCCCAGTCTAA
1 GCATACGCAGTTCATCCCCAATCTAA
*
24394495 GCATACGCAGTTCATTCCCAATCTAA
1 GCATACGCAGTTCATCCCCAATCTAA
24394521 G
1 G
24394522 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGCAGTTCATCCCCAATCTAA
Found at i:24394658 original size:32 final size:32
Alignment explanation
Indices: 24394615--24394675 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
24394605 TCTCCGATCT
*
24394615 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTCG
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTCG
*
24394647 GCTGAGTGCCCGCACGCTCGTTTCATGGG
1 GCTGAGCGCCCGCACGCTCGTTTCATGGG
24394676 GCATACGGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.08, C:0.33, G:0.36, T:0.23
Consensus pattern (32 bp):
GCTGAGCGCCCGCACGCTCGTTTCATGGGTCG
Found at i:24394713 original size:26 final size:26
Alignment explanation
Indices: 24394676--24394728 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24394666 GTTTCATGGG
*
24394676 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
**
24394702 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24394728 G
1 G
24394729 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24396296 original size:26 final size:26
Alignment explanation
Indices: 24396260--24396310 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
24396250 TTGACTTAGG
24396260 CATACAGAGTTCA-TCCCTAGTCTAAA
1 CATACAGAGTTCATTCCC-AGTCTAAA
*
24396286 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
24396311 GATCAGATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:24396650 original size:26 final size:26
Alignment explanation
Indices: 24396614--24396666 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24396604 GTTGACTTAG
*
24396614 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24396640 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24396666 G
1 G
24396667 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24396928 original size:159 final size:157
Alignment explanation
Indices: 24396704--24397140 Score: 470
Period size: 157 Copynumber: 2.8 Consensus size: 157
24396694 TAGGATCGAT
* * * * * *
24396704 AGCACACAGGGGGGACCGAGTCGATCCCCAGCTTACGCATTCTGCCTCTTCGGCCGACTGAGCGC
1 AGCACACAAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
* * * *
24396769 CCGCACGCCCGTTTCGTGGGTTTGTTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACCG
66 CCGCACGCTCGTTTCGTGGGTTTGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGACCCAACCG
** * *
24396834 AAGTGAGGGTTGTGGCAG-TGGTACCAG-C
130 AACCGAGGGTTGTAGCAGCAGG-A-CAGAC
* * * *
24396862 AGCACGCAAAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGGCTCTTCGGTCGGCTCAGCG
1 AGCACAC-AAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCG
** * * * **
24396927 CCCATACGCTCGTTTCGTGGG-TTGACTTATGCGTAGGAGTTCATTTCCA-GTCTAAGATCGGAC
65 CCCGCACGCTCGTTTCGTGGGTTTG-CTTAGGCATAGGAGTTCA-TTCCATGTCTAAGACCCAAC
* *
24396990 TGAACCGAGGGTTGTAGCAGCAGGATAGAC
128 CGAACCGAGGGTTGTAGCAGCAGGACAGAC
* * * *
24397020 AGCACACAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCT-TTCCGATCGGTTGAGCG
1 AGCACACAAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTT-CGGTCGGCTGAGCG
* *
24397084 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAGACGGAGTTCATTCCATGTCTAAG
65 CCCGCACGCTCGTTTCGTGGGTTTGCTTAGGCATA-GGAGTTCATTCCATGTCTAAG
24397141 GATATGGGGC
Statistics
Matches: 229, Mismatches: 41, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
156 2 0.01
157 80 0.35
158 67 0.29
159 80 0.35
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
AGCACACAAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTTGCTTAGGCATAGGAGTTCATTCCATGTCTAAGACCCAACCGA
ACCGAGGGTTGTAGCAGCAGGACAGAC
Found at i:24397084 original size:157 final size:156
Alignment explanation
Indices: 24396647--24397140 Score: 491
Period size: 158 Copynumber: 3.1 Consensus size: 156
24396637 TAAGCATACA
* * * *
24396647 GAGTTCATTCCCA-GTCTAAGATCGGACCGGATCGAGGG-T-TACGACAGTAGGATCGATAGCAC
1 GAGTTCATT-CCATGTCTAAGATCGGACCGAACCGAGGGTTGTA-G-CAG-AGGATAGACAGCAC
* * * * *
24396709 ACAGGGGGGACCGAGTCGATCCCCAGCTTACGCATTCTGCCTCTTCGGCCGACTGAGCGCCCGCA
62 ACAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCA
* * * *
24396774 CGCCCGTTTCGTGGGTTTGTTTAGGCATAGG
127 CGCTCGTTTCGTGGG-TTGCTTAGGCGTACG
* ** ** ** * * * *
24396805 GAGCTCATTCCATGTCTAAGCCCCAACCGAAGTGAGGGTTGTGGCAGTGG-TACCAGCAGCACGC
1 GAGTTCATTCCATGTCTAAGATCGGACCGAACCGAGGGTTGTAGCAGAGGATA-GA-CAGCACAC
* * * * **
24396869 AAAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGGCTCTTCGGTCGGCTCAGCGCCCATAC
64 -AGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCAC
*
24396934 GCTCGTTTCGTGGGTTGACTTATGCGTA-G
128 GCTCGTTTCGTGGGTTG-CTTAGGCGTACG
*
24396963 GAGTTCATTTCCA-GTCTAAGATCGGACTGAACCGAGGGTTGTAGCAGCAGGATAGACAGCACAC
1 GAGTTCA-TTCCATGTCTAAGATCGGACCGAACCGAGGGTTGTAGCAG-AGGATAGACAGCACAC
* * *
24397027 AGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCT-TTCCGATCGGTTGAGCGCCCGCAC
64 AGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTT-CGGTCGGCTGAGCGCCCGCAC
24397091 GCTCGTTTCGTGGGTTGGCTTAGGCAG-ACG
128 GCTCGTTTCGTGGGTT-GCTTAGGC-GTACG
24397121 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
24397141 GATATGGGGC
Statistics
Matches: 270, Mismatches: 51, Indels: 30
0.77 0.15 0.09
Matches are distributed among these distances:
156 3 0.01
157 86 0.32
158 95 0.35
159 83 0.31
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GAGTTCATTCCATGTCTAAGATCGGACCGAACCGAGGGTTGTAGCAGAGGATAGACAGCACACAG
GGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGCTTAGGCGTACG
Found at i:24398235 original size:26 final size:26
Alignment explanation
Indices: 24398205--24398257 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24398195 GTTGACTTAG
24398205 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
24398231 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24398257 G
1 G
24398258 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24398335 original size:26 final size:26
Alignment explanation
Indices: 24398305--24398357 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24398295 GTTGACTTAG
24398305 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24398331 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24398357 G
1 G
24398358 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24398341 original size:100 final size:100
Alignment explanation
Indices: 24398165--24398360 Score: 347
Period size: 100 Copynumber: 2.0 Consensus size: 100
24398155 CCTCTCCAGT
*
24398165 CGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTA
1 CGGCTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTA
*
24398230 AGCATATGGAGTTCATTCCCAGTCTAAGATCGGAC
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
** *
24398265 CGGCTCAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGCTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTA
24398330 AGCATACGGAGTTCATTCCCAGTCTAAGATC
66 AGCATACGGAGTTCATTCCCAGTCTAAGATC
24398361 AGATCGGACC
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 91 1.00
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.26
Consensus pattern (100 bp):
CGGCTCAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
Found at i:24398832 original size:159 final size:158
Alignment explanation
Indices: 24398331--24398821 Score: 421
Period size: 159 Copynumber: 3.1 Consensus size: 158
24398321 CCCAGTCTAA
* * *
24398331 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACC-AGGGGTTG-CGACAGCAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATAGAACCGA-GGGTTGTAG-CAGCAGGATCGA
* * *
24398394 CAGCACGCA-GGGGGACC-GAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACTGGCTAAGT
64 CAGCACGCAGGGGGGACCAG-GCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACTGGCTAAGC
* *
24398457 GCCCGCAC-ATCCGTTTTGTGGGTTGGCTTAG
128 GCCCGCACGCT-CGTTTCGTGGGTTGGCTTAG
** * * * * * * *
24398488 GCATGGGGAGCTCACT-GCATGTCT-A-ACCCG-TAGCCAGACCGAGGGTTGTAGCAGCGGGACC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATAG--A-ACCGAGGGTTGTAGCAGCAGGATC
* * ** * * * * * *
24398549 GGCAACAAACAGAAGGGGA-TAGGGCCAATCCTCAGCTTGCGCATTATGCCTCTTCG-GTCGGCT
62 GACAGCACGCAG-GGGGGACCA-GGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACT-GGCT
* * * * *
24398612 CAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAT
124 AAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
24398647 GCATACGGAATTCATTCCCAATCTAAGATCAGATTGAACCGAGGGTTGTAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATAGAACCGAGGGTTGTAGCAGCAGGATCGACA
** * *
24398712 GCACGCAGGGGGGGACCAGGTTGATCCCC-GACTTGCGCATTTTGCCTCTCCGACTGGCTGAGCG
66 GCACGCA-GGGGGGACCAGGCCGATCCCCAG-CTTGCGCATTATGCCTCTCCGACTGGCTAAGCG
*
24398776 CCCGCACGCTCGTTTCGTGGCTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
24398806 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
24398822 ACATGTCTAA
Statistics
Matches: 250, Mismatches: 64, Indels: 38
0.71 0.18 0.11
Matches are distributed among these distances:
154 2 0.01
155 3 0.01
156 3 0.01
157 40 0.16
158 4 0.02
159 184 0.74
160 9 0.04
161 3 0.01
162 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATAGAACCGAGGGTTGTAGCAGCAGGATCGACA
GCACGCAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGACTGGCTAAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24399217 original size:26 final size:26
Alignment explanation
Indices: 24399187--24399239 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24399177 GTTGACCTAG
24399187 GCATACAAAATTCATCCCCAGTCTAA
1 GCATACAAAATTCATCCCCAGTCTAA
** * *
24399213 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACAAAATTCATCCCCAGTCTAA
24399239 G
1 G
24399240 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAAAATTCATCCCCAGTCTAA
Found at i:24399606 original size:25 final size:26
Alignment explanation
Indices: 24399555--24399606 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24399545 GTTCACTTAG
*
24399555 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
24399581 GCATACGGAGTTCAT-ACCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
24399606 G
1 G
24399607 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:24399840 original size:367 final size:355
Alignment explanation
Indices: 24399142--24400276 Score: 997
Period size: 367 Copynumber: 3.2 Consensus size: 355
24399132 TCCTACCTGT
* ** * ** *
24399142 CTAGTCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACCTAGGCATACAAAATTCATCCCCA
1 CTAGTCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
* * * * * * *
24399207 GTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGTAGGA
66 GTCTAAGCATACGGAGTTCA-TACCAGTCTAAGATCAGACCGAATCGAGGGCTACGGCAGTAGGA
* * * *
24399272 TCGATAGCTCATAAGGGGGATCGGGTTGATCCCCGACTTGCGCATTTTGCCTCTCCGACCGACTG
130 TCGACAGCACATAAGGGGGATCGGGTTGATCCCCGACTTGCGCATTCTACCTCTCCGACCGACTG
* * *
24399337 AGCACCCGCACACTCATTTCGTGGGTTGGCTCAGGCATACAGAGTACATTCCATGTCTAAGCCCC
195 AGCACCCGCACACTCATTTCATGGGTTCGCTCAGGCATACAGAGTACATTCCATGACTAAGCCCC
* *
24399402 AACCGGACCGAGGGTTGTGGCAGTAAGACTGGCAGCGGGATCGACAGCATGCAGAGGGGGATCGA
260 AACCAGACCGAGGGTTGTGGCAGTAAGACCGGCAGCGGGATCGACAGCATGCAGAGGGGGATCGA
*
24399467 GCTGATCCTCGGA-TTACACATTATGCCTCTCCGGCTGAC
325 GCTGATCC-CCGACTTACACATTATGCCT-T-----T--C
* *
24399506 CTCCCCAGTCGACTGAGCACCCGTACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATC
1 CT----AGTCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATC
* *
24399571 CCCAGTCTAAGCATACGGAGTTCATACCAGTCTAAGATCAGATCGAAAT-GGGGGCTACGGCAGT
62 CCCAGTCTAAGCATACGGAGTTCATACCAGTCTAAGATCAGACCG-AATCGAGGGCTACGGCAGT
* * * * * **
24399635 AGGATCGACAGCACA-CAGTGGGGATTGGGTTGATCCCTGGCTTGCGCATTCTACCTCTCTGGTC
126 AGGATCGACAGCACATAAG-GGGGATCGGGTTGATCCCCGACTTGCGCATTCTACCTCTCCGACC
** * ** * *
24399699 GACTGAGCGTCTGCACGTTCGTTTCATGGGTTCGCTTAGGCATACAGAGTACATTCCATGACTAA
190 GACTGAGCACCCGCACACTCATTTCATGGGTTCGCTCAGGCATACAGAGTACATTCCATGACTAA
* * * * *
24399764 GCCCTAGCCAGATCGAGGGTTGTGGCAGTAGGACCGGCAGCGGGATCGACAGCATAG-AGAGGTG
255 GCCCCAACCAGACCGAGGGTTGTGGCAGTAAGACCGGCAGCGGGATCGACAGCAT-GCAGAGGGG
* *
24399828 GATCGGGCTGATCCCCGACTTGCACATTATGCCTTTC
319 GATCGAGCTGATCCCCGACTTACACATTATGCCTTTC
* * *
24399865 CTA-CCGACTGAGCGCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA
1 CTAGTCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
* * * * * * * * * *
24399929 GTCTAAGCATACGGAGTTAATTCTCAGTCTAAGATCAGACTGGACCAAGGGCTGCGACAGCAAGA
66 GTCTAAGCATACGGAGTTCATAC-CAGTCTAAGATCAGACCGAATCGAGGGCTACGGCAGTAGGA
* * * * *** * *
24399994 T-AAGTAGCACA-CAGGAGGG-GCGGACCGATCCCCGACTTGCGCATTCTACCTCACCGGCCGAC
130 TCGA-CAGCACATAAGG-GGGATCGGGTTGATCCCCGACTTGCGCATTCTACCTCTCCGACCGAC
* * * * * * * ** *
24400056 TGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGC
193 TGAGCACCCGCACACTCATTTCATGGGTTCGCTCAGGCATACAGAG-TACATTCCATGACTAAGC
* ** * **
24400120 CCTAGTCGGACCGAGGGTTGTGGCAGCGAGACC--C-GC---A--G-CA-C--GCAGAGGGGGAT
257 CCCAACCAGACCGAGGGTTGTGGCAGTAAGACCGGCAGCGGGATCGACAGCATGCAGAGGGGGAT
* * **
24400173 CG-GGTCGATCCTCGACTTACGTATTATGCCTCTT-
322 CGAGCT-GATCCCCGACTTACACATTATGCCT-TTC
* * * * * ** *
24400207 CGA-TCGGCTTAGCACCCGTACGCTCATTTCAT-GGTTGACTTACACATACGGAGTTCATTCCCA
1 CTAGTCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
24400270 GTCTAAG
66 GTCTAAG
24400277 ATCAGAGTAG
Statistics
Matches: 645, Mismatches: 110, Indels: 55
0.80 0.14 0.07
Matches are distributed among these distances:
341 38 0.06
342 56 0.09
343 2 0.00
344 1 0.00
345 2 0.00
346 1 0.00
348 1 0.00
351 2 0.00
352 1 0.00
354 193 0.30
355 44 0.07
359 3 0.00
361 1 0.00
364 2 0.00
366 6 0.01
367 217 0.34
368 75 0.12
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (355 bp):
CTAGTCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
GTCTAAGCATACGGAGTTCATACCAGTCTAAGATCAGACCGAATCGAGGGCTACGGCAGTAGGAT
CGACAGCACATAAGGGGGATCGGGTTGATCCCCGACTTGCGCATTCTACCTCTCCGACCGACTGA
GCACCCGCACACTCATTTCATGGGTTCGCTCAGGCATACAGAGTACATTCCATGACTAAGCCCCA
ACCAGACCGAGGGTTGTGGCAGTAAGACCGGCAGCGGGATCGACAGCATGCAGAGGGGGATCGAG
CTGATCCCCGACTTACACATTATGCCTTTC
Found at i:24399938 original size:26 final size:26
Alignment explanation
Indices: 24399909--24399961 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24399899 GTTGACTTAG
*
24399909 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* *
24399935 GCATACGGAGTTAATTCTCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
24399961 G
1 G
24399962 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:24400092 original size:354 final size:357
Alignment explanation
Indices: 24399299--24400145 Score: 980
Period size: 354 Copynumber: 2.4 Consensus size: 357
24399289 GGATCGGGTT
* * * * * *
24399299 GATCCCCGACTTGCGCATTTTGCCTCTCCGACCGACTGAGCACCCGCACACTCATTTCGTGGGTT
1 GATCCCCGACTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
24399364 GGCTCAGGCATACAGAGTACATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTAAG
66 GGCTTAGGCATACAGAGTACATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGTAAG
* *
24399429 ACTGGCAGCGGGATCGACAGCATGCAGAGGGGGATCGAGCTGATCCTCGGATTACACATTATGCC
131 ACCGGCAGCGGGATCGACAGCATGCAGAGGGGGATCGAGCTGATCCTCCGATTACACATTATGCC
*
24399494 TCTCCGGCTGACCTCCCCAGTCGACTGAGCACCCGTACGCTCGTTTCATGGGTTCACTTAGGCAT
196 TCT----CT-ACCT---CAGCCGACTGAGCACCCGTACGCTCGTTTCATGGGTTCACTTAGGCAT
*
24399559 ACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATACCAGTCTAAGATCAGATCGAAATGGGG
253 ACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTAATACCAGTCTAAGATCAGATCGAAA--GGG
* * * * ** ***
24399624 GCTACGGCAGTAGGATCGACAGCACACAGTGGGGATTGGGTT
316 GCTACGACAGCAAGATAGACAGCACACAGTGGGGAGCGGACC
* * * * * * * *
24399666 GATCCCTGGCTTGCGCATTCTACCTCTCTGGTCGACTGAGCGTCTGCACGTTCGTTTCATGGGTT
1 GATCCCCGACTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * *
24399731 CGCTTAGGCATACAGAGTACATTCCATGACTAAGCCCTAGCCAGATCGAGGGTTGTGGCAGTAGG
66 GGCTTAGGCATACAGAGTACATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGTAAG
* * *
24399796 ACCGGCAGCGGGATCGACAGCATAG-AGAGGTGGATCGGGCTGATCC-CCGACTTGCACATTATG
131 ACCGGCAGCGGGATCGACAGCAT-GCAGAGGGGGATCGAGCTGATCCTCCGA-TTACACATTATG
* * * *
24399859 CCT-T-T-CCT-A-CCGACTGAGCGCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
194 CCTCTCTACCTCAGCCGACTGAGCACCCGTACGCTCGTTTCATGGGTTCACTTAGGCATACGGAG
* * *
24399919 TTCATCCCCAGTCTAAGCATACGGAGTTAATTCTCAGTCTAAGATCAGACTGGACCAA-GGGCTG
259 TTCATCCCCAGTCTAAGCATACGGAGTTAATAC-CAGTCTAAGATCAGA-TCGA--AAGGGGCTA
*
24399983 CGACAGCAAGATA-AGTAGCACACAG-GAGGG-GCGGACC
320 CGACAGCAAGATAGA-CAGCACACAGTG-GGGAGCGGACC
* *
24400020 GATCCCCGACTTGCGCATTCTACCTCACCGGCCGACTGAGCGCCCGCACGCCCGTTTCGTGGGTT
1 GATCCCCGACTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
** *
24400085 GGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGCAG
66 GGCTTAGGCATACAGAG-TACATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAG
24400146 CGAGACCCGC
Statistics
Matches: 408, Mismatches: 63, Indels: 31
0.81 0.13 0.06
Matches are distributed among these distances:
354 188 0.46
355 43 0.11
356 3 0.01
358 2 0.00
359 3 0.01
361 1 0.00
366 4 0.01
367 163 0.40
368 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.22
Consensus pattern (357 bp):
GATCCCCGACTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACAGAGTACATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGTAAG
ACCGGCAGCGGGATCGACAGCATGCAGAGGGGGATCGAGCTGATCCTCCGATTACACATTATGCC
TCTCTACCTCAGCCGACTGAGCACCCGTACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTT
CATCCCCAGTCTAAGCATACGGAGTTAATACCAGTCTAAGATCAGATCGAAAGGGGCTACGACAG
CAAGATAGACAGCACACAGTGGGGAGCGGACC
Found at i:24401169 original size:26 final size:26
Alignment explanation
Indices: 24401122--24401171 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
24401112 GACTTAGGTG
*
24401122 TACGGAGTTCATCCCTAGTCTAAGTA
1 TACGGAGTTCATCCCTAATCTAAGTA
24401148 TACGGAGTTCATTCCC-AATCTAAG
1 TACGGAGTTCA-TCCCTAATCTAAG
24401172 ATCGGATCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATCCCTAATCTAAGTA
Found at i:24403555 original size:26 final size:26
Alignment explanation
Indices: 24403519--24403571 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24403509 GTTGACTTAG
*
24403519 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
24403545 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24403571 G
1 G
24403572 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24404760 original size:119 final size:119
Alignment explanation
Indices: 24404549--24404782 Score: 396
Period size: 119 Copynumber: 2.0 Consensus size: 119
24404539 TTCGGCTGGC
* * *
24404549 TCAGTGCCTGCATGCTCGTTTCATGGGTTGACTTATGCATGCAGAGTTCATTCTCAGTCTAAGAT
1 TCAGTGCCCGCATGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCATTCTCAGTCTAAGAT
24404614 CAGACGGGGCCTATCTGGCCGACTGAGCGCCCACACGCTTGTTTCGTGGGCTGA
66 CAGACGGGGCCTATCTGGCCGACTGAGCGCCCACACGCTTGTTTCGTGGGCTGA
*
24404668 TCAGTGCCCGCATGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCTCAGTCTAAGAT
1 TCAGTGCCCGCATGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCATTCTCAGTCTAAGAT
* * * *
24404733 CGGACGGGGCCTATCTGGCCGGCTGAGCGCCCGCACGCTTGTTTTGTGGG
66 CAGACGGGGCCTATCTGGCCGACTGAGCGCCCACACGCTTGTTTCGTGGG
24404783 TTGACTTAGG
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
119 107 1.00
ACGTcount: A:0.17, C:0.26, G:0.29, T:0.29
Consensus pattern (119 bp):
TCAGTGCCCGCATGCTCATTTCATGGGTTGACTTATGCATACAGAGTTCATTCTCAGTCTAAGAT
CAGACGGGGCCTATCTGGCCGACTGAGCGCCCACACGCTTGTTTCGTGGGCTGA
Found at i:24404844 original size:26 final size:26
Alignment explanation
Indices: 24404792--24404844 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24404782 GTTGACTTAG
* *
24404792 GCATATGGAGTTCATACCAAGTTTAA
1 GCATACGGAGTTCATACCAAGTCTAA
* *
24404818 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCAAGTCTAA
24404844 G
1 G
24404845 ATTAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATACCAAGTCTAA
Found at i:24405210 original size:26 final size:26
Alignment explanation
Indices: 24405161--24405211 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
24405151 TGACTTAGGC
*
24405161 ATACGGAGTTCATCCACAGTCTAAGT
1 ATACGGAGTTCATCCACAGCCTAAGT
* *
24405187 ATACGGAGTTCATTCTCAGCCTAAG
1 ATACGGAGTTCATCCACAGCCTAAG
24405212 ATTGGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCACAGCCTAAGT
Found at i:24406043 original size:26 final size:26
Alignment explanation
Indices: 24405994--24406046 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24405984 GTTGACTTAG
* *
24405994 GCATACGGAGTTCATCCCCGGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
24406020 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24406046 G
1 G
24406047 ATTGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24406320 original size:159 final size:159
Alignment explanation
Indices: 24406115--24406522 Score: 428
Period size: 159 Copynumber: 2.6 Consensus size: 159
24406105 GATCCCTGGT
** * * * *
24406115 TTGCGCATTCTGCCTCTTCGGCTAGTTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTACACA
1 TTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTACGCA
* * * * * ** ** *
24406180 TAGGGAGCTCATTCCATGTCTAAGCCCCAG-CCGAACCATGGGTTGTGGCAG-TGGCACCGACAG
66 TACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCAAGGGTAGCAGCAGCAAG-ACCAACAG
* * *
24406243 CACGTAGAGGGGGTTCGGGTCGATCCCCGTC
130 CACGAAG-GGGGGATCGGGTCGATCCCCGAC
* * * * *
24406274 TTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCA
1 TTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTACGCA
* * * * * *
24406339 TACGTAGTTCATTCCCA-GTCTAAG-ATCGGATCGGACCAAGGGTAGCAGCAGCAAGATCAACAG
66 TACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCAAGGGTAGCAGCAGCAAGACCAACAG
* *
24406402 CACGAAGGGGGGATCGGGTCGATTCCCGAG
130 CACGAAGGGGGGATCGGGTCGATCCCCGAC
* * * * *
24406432 TTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTCGCTTAGGCA
1 TTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTACGCA
24406497 TACGGAGTTCATTCCATGTCTAAGCA
66 TACGGAGTTCATTCCATGTCTAAGCA
24406523 TATGGAGCTC
Statistics
Matches: 202, Mismatches: 42, Indels: 10
0.80 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 96 0.48
159 99 0.49
160 4 0.02
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (159 bp):
TTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTACGCA
TACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCAAGGGTAGCAGCAGCAAGACCAACAGC
ACGAAGGGGGGATCGGGTCGATCCCCGAC
Found at i:24407269 original size:27 final size:27
Alignment explanation
Indices: 24407211--24407269 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 27
24407201 CATGAGTTGA
* *
24407211 CTTAGGCATACGGAGTTCATCCCTAGT
1 CTTAAGCATACAGAGTTCATCCCTAGT
24407238 C-TAAGCATACAGAGTTCATTCCC-AGT
1 CTTAAGCATACAGAGTTCA-TCCCTAGT
24407264 CTTAAG
1 CTTAAG
24407270 TCGAACCAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 19 0.68
27 9 0.32
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (27 bp):
CTTAAGCATACAGAGTTCATCCCTAGT
Found at i:24407538 original size:13 final size:13
Alignment explanation
Indices: 24407520--24407546 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
24407510 GCGCATTATG
24407520 CCTCTCCGACCGA
1 CCTCTCCGACCGA
24407533 CCTCTCCGACCGA
1 CCTCTCCGACCGA
24407546 C
1 C
24407547 TGAGCGCCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.56, G:0.15, T:0.15
Consensus pattern (13 bp):
CCTCTCCGACCGA
Found at i:24407621 original size:25 final size:26
Alignment explanation
Indices: 24407583--24407634 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
24407573 GTTGACTTAG
* *
24407583 GCATACGGAGTTCA-TCTCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
*
24407608 GCATATGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
24407634 G
1 G
24407635 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:24407972 original size:366 final size:365
Alignment explanation
Indices: 24407186--24408191 Score: 1213
Period size: 366 Copynumber: 2.7 Consensus size: 365
24407176 TCGGCTGAAT
* * **
24407186 GCCC-CACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACAG
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC-AGTCTAAGCATATGG
* * * * * * *
24407250 AGTTCATTCCCAGTCTTAAG-TCGAACCAGATCAAGGGTTACGGCTA-CA-GATCGGCAGCACGT
65 AGTTCATTCCCAGTC-TAAGATCGGATCAGATCGAGGGTTGC-GATAGCAGGATCGACAGCACGC
* * * * *
24407312 AGAGGGAACCGGGCCGATCCCCGGCTTATGCATTCTGCCTCTCCGGCCGGCTAAGCGCCTGCACG
128 AGGGGGAACC-GACCGATCCCC-GCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACG
* * * **
24407377 CTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGCCAGACTAAG
191 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCGAGACCGAG
* * * * * *
24407442 GGTTGTGGCGGTAGGACCGGCAGCAAAATCGATAGCACGCAGAGGGGGACTGGGTTGATCCCCGG
256 GGTTGTGGCAGCAGGACTGGCAGCAAAATCGACAGCACGCAGAGAGGGACTGGGTTGATCCCCAG
*
24407507 CTTGCGCATTATGCCTCTCCGACCGACCTCTCCGACCGACTGAGC
321 CTTGCGCATTATGCCTCTCCGACCGACCTCTCAGACCGACTGAGC
* *
24407552 GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCAGTCTAAGCATATGGA
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATATGGA
* *
24407617 CTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGATAGCAGGATCGACAACACGCAGG
66 GTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGG
* * * *
24407682 GGGAACCTGATCGATCCCCGCTTGCGCATTCTGCCTTTCCGGCCGGTTGAGCGCCCGCACGCTCG
131 GGGAACC-GACCGATCCCCGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCG
24407747 TTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCGAGACCGAGGGTT
195 TTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCGAGACCGAGGGTT
* ***
24407812 GTGGCAGCAGGACTGGTAGCAGGGTCGACAGCACGCAGAGAGGGACTGGGTT-ATCCCCAGCTTG
260 GTGGCAGCAGGACTGGCAGCAAAATCGACAGCACGCAGAGAGGGACTGGGTTGATCCCCAGCTTG
* * * *
24407876 CGTATTATGCCTCTCCGACTGGCCTCTCTAG-CCGGCTGAGC
325 CGCATTATGCCTCTCCGACCGACCTCTC-AGACCGACTGAGC
* * *
24407917 GTCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCACCAGTCTAAGCATATGG
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATC-CCAGTCTAAGCATATGG
* * * * ** * *
24407982 AGTTCATTCCCAATCTAAGATCAGATC-GAACCGAGGGTTGTGGCAGTAGGATCGACAGCACACA
65 AGTTCATTCCCAGTCTAAGATCGGATCAG-ATCGAGGGTTGCGATAGCAGGATCGACAGCACGCA
* * * *
24408046 GGGGGGACCGAGCCGATCCCTGGCTTGTGCATTCTGCCTGT-CGGTCGGCTGAGCGCCCGCACGC
129 GGGGGAACCGA-CCGATCCC-CGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGC
* * * ** * *
24408110 GCGTTTCATGGGTTGGCTTAGGCATAGGGAGCT-CATTCCGTGTCTAAGCCCCAACCG-GATCGA
192 TCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCC-AGCGAGACCGA
* *
24408173 GGGTTATGGCAGCGGGACT
255 GGGTTGTGGCAGCAGGACT
24408192 AATAGCACGC
Statistics
Matches: 553, Mismatches: 76, Indels: 22
0.85 0.12 0.03
Matches are distributed among these distances:
365 98 0.18
366 365 0.66
367 90 0.16
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (365 bp):
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATATGGA
GTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGATAGCAGGATCGACAGCACGCAGG
GGGAACCGACCGATCCCCGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCGAGACCGAGGGTTG
TGGCAGCAGGACTGGCAGCAAAATCGACAGCACGCAGAGAGGGACTGGGTTGATCCCCAGCTTGC
GCATTATGCCTCTCCGACCGACCTCTCAGACCGACTGAGC
Found at i:24408305 original size:159 final size:158
Alignment explanation
Indices: 24408091--24408476 Score: 426
Period size: 159 Copynumber: 2.4 Consensus size: 158
24408081 GCCTGTCGGT
* * * *
24408091 CGGCTGAGCGCCCGCACGCGCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCGTGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-TGTCTA
* * * * * *
24408156 AGCCCCA-ACCGGATCGAGGGTTATGGCAGCGGGA-CTAATAGCACG-CGGAGAGGGACC-GGGC
65 AGCACCAGACCGGACCAAGGGTTATGGCAGCAGGATC-AATAGCACGTAGG-G-GGGACCAGGTC
* **
24408217 TGATCCTCGGCTTACGCATTATGCCTCT-TTGGT
127 -GATCCTCGGCTTACGCATTATGCCTCTCCT-AC
* * * * * *
24408250 TGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCTAGGCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCT-GTCTA
* * *
24408315 AG-ATCAGACCGGGCCAAGGGTTATGGCAGCAGGATCGATAGCACGTAGGGGGGACCAGGTCGAT
65 AGCACCAGACCGGACCAAGGGTTATGGCAGCAGGATCAATAGCACGTAGGGGGGACCAGGTCGAT
*
24408379 CCTCGGCTTACGCATTCTGCCTCTCCTAC
130 CCTCGGCTTACGCATTATGCCTCTCCTAC
*
24408408 CGGCTGAGCGCCCGCATGCTCGTCTT-GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
1 CGGCTGAGCGCCCGCACGCTCGT-TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-TGTCT
24408472 AAGCA
64 AAGCA
24408477 TACGGAGCTC
Statistics
Matches: 188, Mismatches: 30, Indels: 18
0.80 0.13 0.08
Matches are distributed among these distances:
158 90 0.48
159 95 0.51
160 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTGTCTAA
GCACCAGACCGGACCAAGGGTTATGGCAGCAGGATCAATAGCACGTAGGGGGGACCAGGTCGATC
CTCGGCTTACGCATTATGCCTCTCCTAC
Found at i:24408440 original size:158 final size:154
Alignment explanation
Indices: 24407974--24408474 Score: 465
Period size: 158 Copynumber: 3.2 Consensus size: 154
24407964 ACCAGTCTAA
* * * * * * * *
24407974 GCATATGGAGTTCATTCCCAATCTAAGATCAGATCGAACCGAGGGTTGTGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCGATA
* ** * *
24408039 GCACACAGGGGGGACCGAGCCGATCC-CTGGCTTGTGCATTCTGCCTGTCGGTCGGCTGAGCGCC
66 GCAC-GAGGGGGGACCG-GCCGATCCTC-GGCTTACGCATTCTGCCTCTC-CTCGGCTGAGCGCC
* *
24408103 CGCACGCGCGTTTCATGGGTTGGCTTAG
127 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * *
24408131 GCATAGGGAGCTCATTCCGT-GTCTAAGCCCCA-ACCGGATCGAGGGTTATGGCAGCGGGA-CTA
1 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCGGACCGAGGGTTATGGCAGCAGGATC-G
* * * ** * *
24408193 ATAGCACGCGGAGAGGGACCGGGCTGATCCTCGGCTTACGCATTATGCCTCTTTGGTTGGCTCAG
63 ATAGCACGAGG-G-GGGACC-GGCCGATCCTCGGCTTACGCATTCTGCCTC--TCCTCGGCTGAG
* * *
24408258 CACCCGCACGCTCGTTTCGTGGGTTGACTTAT
123 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
24408290 GCATACGGAGTTCATTCCTAGGCTAAGATCAGACCGGGCCAAGGGTTATGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCGATA
*
24408355 GCACGTAGGGGGGACCAGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCTACCGGCTGAGCGCC
66 GCACG-AGGGGGGACC-GGCCGATCCTCGGCTTACGCATTCTGCCTCTCCT--CGGCTGAGCGCC
*
24408420 CGCATGCTCGTCTT-GTGGGTTGGCTTAG
127 CGCACGCTCGT-TTCGTGGGTTGGCTTAG
24408448 GCATACGGAGTTCATTCC-ATGTCTAAG
1 GCATACGGAGTTCATTCCTA-GTCTAAG
24408475 CATACGGAGC
Statistics
Matches: 274, Mismatches: 53, Indels: 33
0.76 0.15 0.09
Matches are distributed among these distances:
156 5 0.02
157 51 0.19
158 121 0.44
159 93 0.34
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCAGGATCGATA
GCACGAGGGGGGACCGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCTCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24408498 original size:26 final size:26
Alignment explanation
Indices: 24408448--24408500 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24408438 GTTGGCTTAG
* *
24408448 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24408474 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24408500 G
1 G
24408501 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24408992 original size:26 final size:26
Alignment explanation
Indices: 24408956--24409006 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24408946 GTTGACTTAG
24408956 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24408982 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
24409007 CGATCAGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24409634 original size:158 final size:159
Alignment explanation
Indices: 24409405--24409846 Score: 454
Period size: 158 Copynumber: 2.8 Consensus size: 159
24409395 AGCAGGATCA
* * * * ** *
24409405 GCAGCACGCAGGGGGGGATCAGGTCGACCCCCCG-TTTATGCATTCTGCCGCTCCGACCGGATAA
1 GCAGCACGCAGAGGGGGATCGGGTCGA-TCCCCGACTTGCGCATTCTGCCTCTCCGACCGGATAA
* * * *
24409469 GCGCCCGCACGC-CTTTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCC
65 GCACCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCACC
24409533 AG-CGGACCGAGGGTTACGGCA-ACG-A-GACCG
129 AGACGGACCGAGGGTTAC-G-ATA-GTAGGACCG
* * * *
24409563 GCAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTCAG
1 GCAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGATAAG
* * **
24409628 CACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGCTCATTCTCA-GTCTAAG-ATTA
66 CACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGCTCATTC-CATGTCTAAGCACCA
**
24409691 GACCGGACCGAGGGTTACGATAGTAGGATTG
130 GA-CGGACCGAGGGTTACGATAGTAGGACCG
* * * ** * * * *
24409722 ACAGCATGTAGAGGGGGATCGAATCGATCCCCGACTTGCACATTCTGCCTCTCCTG-TCGGTTGA
1 GCAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCC-GACCGGATAA
* *
24409786 GCA-CCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 GCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCA
24409847 TATGGAGCTC
Statistics
Matches: 237, Mismatches: 36, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
157 11 0.05
158 149 0.63
159 76 0.32
160 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (159 bp):
GCAGCACGCAGAGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGATAAG
CACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCACCAG
ACGGACCGAGGGTTACGATAGTAGGACCG
Found at i:24410722 original size:26 final size:26
Alignment explanation
Indices: 24410692--24410744 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24410682 GTTGACTTAG
*
24410692 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24410718 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24410744 G
1 G
24410745 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24411008 original size:158 final size:159
Alignment explanation
Indices: 24410811--24411221 Score: 393
Period size: 158 Copynumber: 2.6 Consensus size: 159
24410801 GCTGATCCTC
* * * * * * *
24410811 GGCTTACGCATTCTGCCTCTCCG-GCCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTA
1 GGCTTGCGCATTATGCCTCTCCGATCC-ACTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTA
* * * *
24410875 GGCATAGGCAGTTCATTCCATGTCTAAGCCCCA-ACCAGATCGAGGGTTGTGGCAGCGGGACCGA
65 GGCATAGG-AGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTAGCAGCAGGACCGA
* * *
24410939 CAGCACGCAGAGGGGGACCGGGTCGAT-CCCT
129 CAGCACACAGAGGGGG-CCAGGTCAATCCCCT
* *** * * * *
24410970 GGCTTGCGCATTATGCCTCTTC-ATCGGTTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAT
1 GGCTTGCGCATTATGCCTCTCCGATCCACTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** ** *
24411034 GCATACGTAGTTCATTTCCA-ATCTAA-CATTAGACTGGACCGAGGGTTGTAGCAGCAGGATCGA
66 GCATA-GGAGTTCA-TTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTAGCAGCAGGACCGA
* *
24411097 TAGCACACAGAGGGGGTCAGGTCAATCCCCT
129 CAGCACACAGAGGGGGCCAGGTCAATCCCCT
* * * * *
24411128 GGCTTGGGCATTCTGCCTCTCCGGTCCACTGAGCACCCGCACGCTCGTTTCGTGGGCTGGCTTAG
1 GGCTTGCGCATTATGCCTCTCCGATCCACTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
24411193 GCATACGGAGTTCATTCCATGTTTAAGCA
66 GCATA-GGAGTTCATTCCATGTCTAAGCA
24411222 TACGGAGCTC
Statistics
Matches: 199, Mismatches: 45, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 9 0.05
158 113 0.57
159 75 0.38
160 2 0.01
ACGTcount: A:0.18, C:0.29, G:0.28, T:0.24
Consensus pattern (159 bp):
GGCTTGCGCATTATGCCTCTCCGATCCACTCAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
GCATAGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTAGCAGCAGGACCGACA
GCACACAGAGGGGGCCAGGTCAATCCCCT
Found at i:24411245 original size:26 final size:26
Alignment explanation
Indices: 24411193--24411245 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24411183 GCTGGCTTAG
* * *
24411193 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGCTCATTCCATATCTAA
24411219 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24411245 G
1 G
24411246 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24412671 original size:26 final size:26
Alignment explanation
Indices: 24412642--24412694 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24412632 GTTGACTTAG
*
24412642 GCATAC-AGAGTTTATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
24412668 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24412694 G
1 G
24412695 ATCAGACAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24412782 original size:368 final size:366
Alignment explanation
Indices: 24411864--24413612 Score: 1569
Period size: 368 Copynumber: 4.8 Consensus size: 366
24411854 TGCGCATCCT
* * * * * * * * *
24411864 GCCTCTCTGGTC-AACTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACCGAGTTC
1 GCCTCTCCGGTCGGACTGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTT
*** * * * **
24411928 ATCTGTAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTACGGC
66 ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CGGATTAAGGGTTACGGC
* * * * * * * *
24411993 AGCAGGATCGGCAGCACATCGGGGGGATCGGACCGATCCTCAGCTTGCCCATTCTGCCTCTCCGA
130 AGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
** * * ** ** *
24412058 CCGGCTGAGTGCCTGCACTCTCATTTTGTGGGTTGGCTTAGGCATACAGAGTACATTCCA-TGTC
195 CCGGCTGAGCACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACT-TC
* * * * **
24412122 AAAGCCCCAGTCGGATCGAGGGTTGTGTCAGCAGGATCG---GTAGGA-CG-TTG---A-AG-GG
259 TAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGACAGTAGGATCGAAAGCACATAGAGG
* * * *
24412177 GACTGGGCTGATCCCCGGCTTTGCTCATTATGCCTCTCCAG-CT
324 GACTGGGCTGATCCCCGGC-TTACGCATTATGCCTCTCCGGCCA
* * *
24412220 GCCTCTCCGTTCGGACTGAGCGGCCCGCAACGCTCGTTTCATCGGTTGACTTA-GCATACGG-GA
1 GCCTCTCCGGTCGGACTGAGC-GCCCGTAA-GCTCGTTTCATGGGTTGACTTAGGCATACGGAG-
*
24412283 TTTCATCCCCA-TCTAAGCATACTTG-AGCTCATTCCCAGTCTAAGATCAGATCGGATTGAA-GG
63 TTT-ATCCCCAGTCTAAGCATAC--GAAGTTCATTCCCAGTCTAAGATCAGA-CGGATT-AAGGG
* * * * * * *
24412345 TTGCGACAGCAGGATCGACAGCACGCT-GGGGGGACTGGGCCAATCCCTGGCTTGCGCATTTTAC
123 TTACGGCAGCAGGATCGACAGCACG-TAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGC
* * * *
24412409 CTCTCCGATCGGTTAAGCCCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTACATT
187 CTCTCCGACCGGCTGAGCACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTACATT
* ** * * *
24412474 CCACTTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAATAAGACCGACAGTGGGATTGAAAGCAC
252 CCACTTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGACAGTAGGATCGAAAG--C
* * * * *
24412539 ACAAAAAGGGA-TCGGGTTGATCCTCGGCTTACGTATTATGCCTCTCCGGCCA
315 ACATAGAGGGACT-GGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGGCCA
* * * * *
24412591 GCCTTTCCGGTC-GACTGAGCGTCCATAAGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTT
1 GCCTCTCCGGTCGGACTGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTT
*
24412655 ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAGGATTAAGGGTTACGGT
66 ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC-GGATTAAGGGTTACGGC
* * * ** *
24412720 AGCAGGATCGATAGCACGTATGAGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCAA
130 AGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
* * * * *
24412785 CCGACTGAGCACTCACACG-TTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACGTC
195 CCGGCTGAGCACCCGCACGCTT-GTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACTTC
* * * * * * *
24412849 TAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCAGGATCGGCAATGGGATCGACAA-CACATAGAT
259 TAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGACAGTAGGATCGA-AAGCACATAGA-
* *
24412913 TGGGACTGGGCTGATCCCCGGCTTACGCATTATGCCTCTCTGACC-
322 -GGGACTGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGGCCA
* * *
24412958 GACCTCT-CTGACTGG-CTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
1 G-CCTCTCCGGTC-GGACTGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* * * *
24413021 TTATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGATTGAGGGTTAAG
64 TTATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CGGATTAAGGGTTACG
* * * ** *
24413086 GCAGTAGGATCGACAACACGCAGGGGGGACCAAGCCGATCCTCGGCTTGCGCATTCTGCCTCTCC
128 GCAGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC
** *
24413151 -AGCCGGCTGAGCACCCGCACGCTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTACATTCCACA
193 GA-CCGGCTGAGCACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACT
** * * ** ** *
24413215 TCTAAAACACAGCCGGACCGAGGGTTGTGGGTGCAGGACCGACAGTAGGATCGGCAGTACATAGA
257 TCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGACAGTAGGATCGAAAGCACATAGA
* * * * * * *
24413280 GGGGGAATCGGTTGATCCCCAGCTTGCCCATTATGCCTCTCCGGGCA
322 --GGGACTGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGGCCA
* * * * * *
24413327 ACCTCTCCGGTCGG-CTGAACGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
1 GCCTCTCCGGTCGGACTGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTT
* * * * * ** *
24413391 ATCCCCATTCTAAGCATAGGGAGTTCATTCCTAGTCTAAGATCAGGCTGGACCAAGGGTTGCGGC
66 ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC-GGATTAAGGGTTACGGC
* ** * * * * * * * * *
24413456 AACAGGATCGGTAGCATGCAGAGGGTACCGGGCCAATCCCTGACTTGCGTATTCTACCTCTCCGA
130 AGCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
* * ** *
24413521 CCAGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCT-CATTCCA-TGT
195 CCGGCTGAGCACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCACT-T
* * *
24413584 CTAAGCCCTAGTCAGACCGAGGATTGTGG
258 CTAAGCCCCAGTCGGACCGAGGGTTGTGG
24413613 TAGTGGGACT
Statistics
Matches: 1124, Mismatches: 220, Indels: 86
0.79 0.15 0.06
Matches are distributed among these distances:
356 10 0.01
357 7 0.01
358 26 0.02
359 191 0.17
360 4 0.00
362 5 0.00
363 1 0.00
364 1 0.00
366 6 0.01
367 13 0.01
368 766 0.68
369 38 0.03
370 28 0.02
371 28 0.02
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.24
Consensus pattern (366 bp):
GCCTCTCCGGTCGGACTGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTT
ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACGGATTAAGGGTTACGGCA
GCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAC
CGGCTGAGCACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACTTCTA
AGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGACAGTAGGATCGAAAGCACATAGAGGGA
CTGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGGCCA
Found at i:24413039 original size:26 final size:26
Alignment explanation
Indices: 24413010--24413062 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24413000 GTTGACTTAG
* *
24413010 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
24413036 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24413062 G
1 G
24413063 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24413295 original size:736 final size:723
Alignment explanation
Indices: 24411865--24413660 Score: 1902
Period size: 736 Copynumber: 2.5 Consensus size: 723
24411855 GCGCATCCTG
* * * * * *
24411865 CCTCTCTGGTCAACTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACCGAGTTCAT
1 CCTCTCCGGTCGACTGAACGCTCGCAAGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT
*** * * *
24411930 CTGTAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTACGGCAG
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGATCAAGGGTTACGGCAG
* * * * * * * * *
24411995 CAGGATCGGCAGCACATCGGGGGGATCGGACCGATCCTCAGCTTGCCCATTCTGCCTCTCCGACC
130 CAGGATCGGTAGCACGT-AGAGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACC
* * ** *
24412060 GGCTGAGTGCCT-GCAC-TCTCATTTTGTGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCA
194 GACTGA--GCCTCGCACGT-TCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCT
* * *
24412123 AAGCCCCAGTCGGATCGAGGGTTGTGTCAGCAGGATCGGTAGGACGTTGAAGGGGACTGGGCTGA
256 AAGCCCCAGTCAGATCGAGGGTTGTGGCAGCAGGATCGGTAGGACGTAGAAGGGGACTGGGCTGA
* * * *
24412188 TCCCCGGCTTTGCTCATTATGCCTCTCCAGCTGCCTCTCCGTTCGGACTGAGCGGCCCGCAACGC
321 TCCCCGGCTTTACGCATTATGCCTCTCCAGCCGCCTCTCCGCTCGGACTGAGCGGCCCGCAACGC
24412253 TCGTTTCATCGGTTGACTTAGCATACGGGATTTCATCCCCATCTAAGCATACTTGAGCTCATTCC
386 TCGTTTCATCGGTTGACTTAGCATACGGGATTTCATCCCCATCTAAGCATAC-TGAGCTCATTCC
** * * ***
24412318 CAGTCTAAGATCAGATCGGATTGAAGGTTGCGACAGCAGGATCGACAGCACGCTGGGGGGACTGG
450 CAGTCTAAGATCAGATCGGATTGAAGGTTAAGACAGCAGGATCGACAACACGCAGGGGGGACCAA
* * * *
24412383 GCCAATCCCTGGCTTGCGCATTTTACCTCTCCGATCGGTTAAGCCCCCGCACGCTTGTTTCATGG
515 GCCAATCCCTGGCTTGCGCATTCTACCTCTCCGACCGGCTAAGCACCCGCACGCTTGTTTCATGG
* ** * * *
24412448 GTTGGCTTAGGCATACGGAGTACATTCCACTTCTAAGCCCCAGTCGGACCAAGGGTTGTGGCAAT
580 GTTGGCTTAGGCATACGGAGTACATTCCACATCTAAAACACAGCCGGACCAAGGGTTGTGGCAAC
* * * * **
24412513 AAGACCGACAGTGGGATTGAAAGCACACAAAAAGGGATCGGGTTGATCCTCGGCTTACGTATTAT
645 AAGACCGACAGTAGGATCGAAAGCACACAAAAAGGGATCGGGTTGATCCCCAGCTTACCCATTAT
*
24412578 GCCTCTCCGGCCAG
710 GCCTCTCCGGCCAA
* * *
24412592 CCTTTCCGGTCGACTGAGCG-TC-CATAAGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTT
1 CCTCTCCGGTCGACTGAACGCTCGC--AAGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTC
* * *
24412655 ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACAGGATTAAGGGTTACGGT
64 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGATCAAGGGTTACGGC
* *
24412720 AGCAGGATCGATAGCACGTATGAGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCAA
128 AGCAGGATCGGTAGCACGTA-GAGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGA
* *
24412785 CCGACTGAGCACTCACACGTTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCT
192 CCGACTGAGC-CTCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCT
* * **
24412850 AAGCCCCAGCCAGATCGAGGGTTGTGGCAGCAGGATCGGCAATGGGATCGACAACACATAGATTG
256 AAGCCCCAGTCAGATCGAGGGTTGTGGCAGCAGGATCGG---TAGGA-CG--------TAGAAGG
* *
24412915 GGACTGGGCTGATCCCCGGC-TTACGCATTATGCCTCT-CTGACCGACCTCTCTGACT-GG-CTG
309 GGACTGGGCTGATCCCCGGCTTTACGCATTATGCCTCTCCAG-CCG-CCTCTCCG-CTCGGACTG
* *
24412976 AGC-GCCCG-TACGCTCGTTTCATGGGTTGACTTAGGCATAC-GGAGTTT-ATCCCCAGTCTAAG
371 AGCGGCCCGCAACGCTCGTTTCATCGGTTGACTTA-GCATACGGGA-TTTCATCCCCA-TCTAAG
* * * * * *
24413037 CATAC-GAAGTTCATTCCCAGTCTAAGATCGGATTGGATTGAGGGTTAAGGCAGTAGGATCGACA
433 CATACTG-AGCTCATTCCCAGTCTAAGATCAGATCGGATTGAAGGTTAAGACAGCAGGATCGACA
* * *
24413101 ACACGCAGGGGGGACCAAGCCGAT-CCTCGGCTTGCGCATTCTGCCTCTCC-AGCCGGCTGAGCA
497 ACACGCAGGGGGGACCAAGCCAATCCCT-GGCTTGCGCATTCTACCTCTCCGA-CCGGCTAAGCA
**
24413164 CCCGCACGCTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAAACACAGCC
560 CCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAAACACAGCC
* *** * ** * * * **
24413229 GGACCGAGGGTTGTGGGTGCAGGACCGACAGTAGGATCGGCAGTACATAGAGGGGGAATC-GGTT
625 GGACCAAGGGTTGTGGCAACAAGACCGACAGTAGGATCGAAAGCACACAAAAAGGG-ATCGGGTT
* *
24413293 GATCCCCAGCTTGCCCATTATGCCTCTCCGGGCAA
689 GATCCCCAGCTTACCCATTATGCCTCTCCGGCCAA
* * * *
24413328 CCTCTCCGGTCGGCTGAACGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGGTCGACTGAACGCTCGCAAGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT
* * * * * * *
24413393 CCCCATTCTAAGCATAGGGAGTTCATTCCTAGTCTAAGATCAGGCTGGACCAAGGGTTGCGGCAA
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGATCAAGGGTTACGGCAG
* * * ** * *
24413458 CAGGATCGGTAGCATGCAGAGGGTACCGGGCCAATCCCTGACTTGCGTATTCTACCTCTCCGACC
130 CAGGATCGGTAGCACGTAGAGGG-ACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACC
* ** **
24413523 -AGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCT
194 GA-CTGAGC-CTCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACAGAG-TACATTCCATGTCT
* * * * ** * * * *
24413586 AAGCCCTAGTCAGACCGAGGATTGTGGTAGTGGGA-CTGGCAGCACATAGAAGGGGACTGGGCCG
256 AAGCCCCAGTCAGATCGAGGGTTGTGGCAGCAGGATC-GGTAGGACGTAGAAGGGGACTGGGCTG
*
24413650 ATCCTCGGCTT
320 ATCCCCGGCTT
24413661 GTGCACTATG
Statistics
Matches: 883, Mismatches: 150, Indels: 74
0.80 0.14 0.07
Matches are distributed among these distances:
724 23 0.03
725 4 0.00
726 4 0.00
727 243 0.28
728 1 0.00
730 4 0.00
731 2 0.00
732 1 0.00
733 2 0.00
735 12 0.01
736 496 0.56
737 33 0.04
738 24 0.03
739 33 0.04
740 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (723 bp):
CCTCTCCGGTCGACTGAACGCTCGCAAGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT
CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGATCAAGGGTTACGGCAGC
AGGATCGGTAGCACGTAGAGGGACCGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCGACCGA
CTGAGCCTCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTAAGCC
CCAGTCAGATCGAGGGTTGTGGCAGCAGGATCGGTAGGACGTAGAAGGGGACTGGGCTGATCCCC
GGCTTTACGCATTATGCCTCTCCAGCCGCCTCTCCGCTCGGACTGAGCGGCCCGCAACGCTCGTT
TCATCGGTTGACTTAGCATACGGGATTTCATCCCCATCTAAGCATACTGAGCTCATTCCCAGTCT
AAGATCAGATCGGATTGAAGGTTAAGACAGCAGGATCGACAACACGCAGGGGGGACCAAGCCAAT
CCCTGGCTTGCGCATTCTACCTCTCCGACCGGCTAAGCACCCGCACGCTTGTTTCATGGGTTGGC
TTAGGCATACGGAGTACATTCCACATCTAAAACACAGCCGGACCAAGGGTTGTGGCAACAAGACC
GACAGTAGGATCGAAAGCACACAAAAAGGGATCGGGTTGATCCCCAGCTTACCCATTATGCCTCT
CCGGCCAA
Done.