Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 246 of 402
Found at i:24413428 original size:26 final size:26
Alignment explanation
Indices: 24413378--24413430 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24413368 GTTGACTTAG
*
24413378 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
24413404 GCATAGGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24413430 G
1 G
24413431 ATCAGGCTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24415602 original size:184 final size:183
Alignment explanation
Indices: 24415265--24415696 Score: 469
Period size: 184 Copynumber: 2.3 Consensus size: 183
24415255 TTCGGCCGGT
* * * * * * **
24415265 TGAGCACCTGCACGCTCGTTTCCTGGGTTGACTTAGGCATATGGTGTTCATCCCTAT-TCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG-TCATTTC-ATGTCTAAGC
* * * *
24415329 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGATAGTAGGATCGACAAC
64 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAAC
* * * * * * *
24415394 ATGTAGGGGGGATCGGTACGATCCCCGATTTGTGCATTTTGCCTCTCC-AGTCGGC
129 ACGCAGGGGGGACCGGTACGATCCCCAACTTGCGCATTCTGCCTCTCCTA-TCGGC
*
24415449 TGAGCGCCCGCACGAC-CGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTTCATGTCTAAGC
1 TGAGCGCCCGCACG-CTCGTTTCATGGGTTGGCTTAGGCATACGGAG-TCATTTCATGTCTAAGC
* * *
24415513 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGATC-AGTAG
64 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGA-CAA
* * *
24415577 CACGCATGGGGGACCAGG-CCGATCCCCAACTTGCGCATTCTGCCTCTCCTATCGGT
128 CACGCAGGGGGGACC-GGTACGATCCCCAACTTGCGCATTCTGCCTCTCCTATCGGC
* * ** * *
24415633 TGAGCGCCCGTACGCTCATTTTGTGGGTTGGCTTAGGCATACAGAGTACATTTCACGTCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT-CATTTCATGTCTAAGC
24415697 CCCAGTCAGA
Statistics
Matches: 208, Mismatches: 33, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
183 5 0.02
184 199 0.96
185 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.26
Consensus pattern (183 bp):
TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTCATTTCATGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGACAACAC
GCAGGGGGGACCGGTACGATCCCCAACTTGCGCATTCTGCCTCTCCTATCGGC
Found at i:24416167 original size:158 final size:160
Alignment explanation
Indices: 24415905--24416370 Score: 475
Period size: 159 Copynumber: 2.9 Consensus size: 160
24415895 CGAATTGGAC
* * * * *
24415905 CCGAGGGTTGTGGTAGCAGGATCAACAGCACGTA-AGGGGGACCGGGCTGATCCCTGGCTTGCAC
1 CCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGC
* * * * *
24415969 ATTTTGCCTCTCCGGCCGACTAAGCGCCCGTAC-GTCCATTTCGTGGGTTAGCTTAGGCATA-GG
66 ATTATGCCTCTTCGACCGGCTAAGCGCCCGTACACT-CATTTCGTGGGTTAGCTTAGGCATACGG
* * *
24416032 AGCTCATTCCATGTCTAAGCCCCAG-CCGGA
130 AGTTCATTCCATGTCTAAGCACCAGACCAGA
** * * ** * *
24416062 GTGAGGGTTGTGGTAGCGGGACCGGTAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCGC
1 CCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGC
* * * *
24416127 ATTATGCCTCTTCGATCGGCTCAGCGCCCGCACACTCATTTCGTGGGTT-GACTTATGCATACGG
66 ATTATGCCTCTTCGACCGGCTAAGCGCCCGTACACTCATTTCGTGGGTTAG-CTTAGGCATACGG
*
24416191 AGTTCATTCCCA-GTCTAAG-ATCAGACCAGA
130 AGTTCATT-CCATGTCTAAGCACCAGACCAGA
* * * * * *
24416221 CCGAGGGTTGTGGCT-GCAAGATCGACAGCACACAG-GAGGGGACCAGGTCGATCCCCAGCTTGT
1 CCGAGGGTTGTGG-TAGCAGGATCGACAGCACGCAGAG-GGGGACCGGGCCGATCCCCGGCTTGC
* * * *
24416284 GCATTCTGCCTC-TCTGACCGGCTGAGCACCCGTACACTCATTTCATGGGTTAGCTTAGGCATAC
64 GCATTATGCCTCTTC-GACCGGCTAAGCGCCCGTACACTCATTTCGTGGGTTAGCTTAGGCATAC
*
24416348 GAAGTTCATTCCATGTCTAAGCA
128 GGAGTTCATTCCATGTCTAAGCA
24416371 TACGGAGCTC
Statistics
Matches: 249, Mismatches: 48, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
157 27 0.11
158 82 0.33
159 134 0.54
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (160 bp):
CCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGC
ATTATGCCTCTTCGACCGGCTAAGCGCCCGTACACTCATTTCGTGGGTTAGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCACCAGACCAGA
Found at i:24417102 original size:26 final size:26
Alignment explanation
Indices: 24417066--24417118 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24417056 GTTGACTTAG
* *
24417066 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
24417092 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24417118 G
1 G
24417119 ATTAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24417485 original size:26 final size:26
Alignment explanation
Indices: 24417437--24417486 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
24417427 GACTTAGGCG
**
24417437 TACGGAGTTCATCCTTAGCCTAAGCA
1 TACGGAGTTCATCCGCAGCCTAAGCA
* *
24417463 TACGGAGTTCATTCGCAGTCTAAG
1 TACGGAGTTCATCCGCAGCCTAAG
24417487 ATCGAACCAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCGCAGCCTAAGCA
Found at i:24417817 original size:367 final size:363
Alignment explanation
Indices: 24417029--24418052 Score: 1171
Period size: 367 Copynumber: 2.8 Consensus size: 363
24417019 CTCTGGTCGG
* *
24417029 CTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGC
* * * * *
24417094 ATACGGAGTTCATTCCCAATCTAAGATTAGATCAGATCGAGGGTTGCGGTAGTAGGATCAATAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATAAGACCAGATCGAGGGTTGCGGTAGCAGGATCGATAGC
* * * *
24417159 AC-ATAGGGGGGACCGAGCCGATCCCCGGCGTGCGCATTCTACCTCTCCAGTCGGCTGAGTGCC-
131 ACGA-A-GGGGGACCGAGCCGATCCCCGGC-TTCGCATTCTGCCTCTCC-GTCGACTGAG-CCCT
* * * * *
24417222 CGCACGTTCGTTTCGTTGGTTGGCTTAGGCATACGAAGTACACTCCACATCTAACCCCCAGTCGG
191 CGCACGATCGTTTCGTGGGTTGGCTTAGGCATACG-AGTACA-TTCACGTCTAACCCCCAGCCGG
* * ** *
24417287 ATCGAGGGTTGTGGTAGTAGGACCGGCAGTGGGATCGACAGCACACAGAGGGGGATCGGGCTGAT
254 ATCGAGGGTTGTGGCAGCAGGACCGGCAGCAGGATCGACAGCACACAGAGAGGGATCGGGCTGAT
** * * **
24417352 CCCCGGCTTGTGCATTATGCCTTTTCGATCGGCCTCTCCGGTCGA
319 CCCCGGCTTGCACATTATGCCTCTCCGATCGGCCTCTCCGACCGA
* * * * ** *
24417397 CTGAGCGCTCGTACGCTCGTTTCATGGGTTGACTTAGGCGTACGGAGTTCATCCTTAGCCTAAGC
1 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGC
* * *
24417462 ATACGGAGTTCATTCGCAGTCTAAGAT-CGAACCAGATTGAGGGTTGCGGTAGCAGGATCGATAG
66 ATACGGAGTTCATTCCCAGTCTAAGATAAG-ACCAGATCGAGGGTTGCGGTAGCAGGATCGATAG
* *
24417526 CACGCAAGGGGGACCGAGCCAATCCTCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCCCTC
130 CACG-AAGGGGGACCGAGCCGATCCCCGGCTT-CGCATTCTGCCTCTCC-GTCGACTGAGCCCTC
* * * * *
24417591 GTACGCTCCTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCACGTCTTACCCCCAGCCGGAC
192 GCACGATCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTACATTCACGTCTAACCCCCAGCCGGAT
* * *
24417656 CGAGGGTTGTGGCAGCAGGACCGACAGCAGGATCGACAGCACGCAGAGAGGGA-CAGGGTTGATC
256 CGAGGGTTGTGGCAGCAGGACCGGCAGCAGGATCGACAGCACACAGAGAGGGATC-GGGCTGATC
* *
24417720 CTCGGCTTGCACATTATGCCTCTCC-AGTCGGCCTTTCCGACCGA
320 CCCGGCTTGCACATTATGCCTCTCCGA-TCGGCCTCTCCGACCGA
* *
24417764 CTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACCTAGGCATATGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGC
* * * *** *
24417829 ATATGGAGTTCATTCCCAGTCTAAGGTAAGACCGGATCGAGGGTTGCAACAGCAGGATCGGTAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATAAGACCAGATCGAGGGTTGCGGTAGCAGGATCGATAGC
* * * * ** * *
24417894 ACGAAGGGGGGATCGGGCCGATCCCCGGCTTGGACATTCTGCCTCGCCAACCAGCTGAGCGCTCG
131 ACGAA-GGGGGACCGAGCCGATCCCCGGCTTCG-CATTCTGCCTCTCCGTCGA-CTGAGCCCTCG
* *
24417959 CACGATCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTC-CTTGTCTAAGCCCCAGCCGG
193 CACGATCGTTTCGTGGGTTGGCTTAGGCATA-CGAG-TACATTCAC--GTCTAACCCCCAGCCGG
* * *
24418022 ATCAAGGGCTGTGGCAGCGGGACCGGCAGCA
254 ATCGAGGGTTGTGGCAGCAGGACCGGCAGCA
24418053 TGCAGAGGGG
Statistics
Matches: 552, Mismatches: 88, Indels: 32
0.82 0.13 0.05
Matches are distributed among these distances:
366 8 0.01
367 303 0.55
368 238 0.43
369 2 0.00
370 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (363 bp):
CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATAAGACCAGATCGAGGGTTGCGGTAGCAGGATCGATAGC
ACGAAGGGGGACCGAGCCGATCCCCGGCTTCGCATTCTGCCTCTCCGTCGACTGAGCCCTCGCAC
GATCGTTTCGTGGGTTGGCTTAGGCATACGAGTACATTCACGTCTAACCCCCAGCCGGATCGAGG
GTTGTGGCAGCAGGACCGGCAGCAGGATCGACAGCACACAGAGAGGGATCGGGCTGATCCCCGGC
TTGCACATTATGCCTCTCCGATCGGCCTCTCCGACCGA
Found at i:24417837 original size:26 final size:26
Alignment explanation
Indices: 24417801--24417853 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24417791 GTTGACCTAG
24417801 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
24417827 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
24417853 G
1 G
24417854 GTAAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:24418351 original size:26 final size:26
Alignment explanation
Indices: 24418303--24418353 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
24418293 TTGACTTAAA
* *
24418303 ATACGGAGTTCTTTCCATGTCTAAGC
1 ATACGGAGTTCATTCCATATCTAAGC
24418329 ATACGGAGTTCATTCC-TAATCTAAG
1 ATACGGAGTTCATTCCAT-ATCTAAG
24418354 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATATCTAAGC
Found at i:24420142 original size:26 final size:26
Alignment explanation
Indices: 24420113--24420165 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24420103 GTTGACTTAG
24420113 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24420139 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24420165 G
1 G
24420166 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24420501 original size:159 final size:158
Alignment explanation
Indices: 24420146--24420640 Score: 419
Period size: 158 Copynumber: 3.1 Consensus size: 158
24420136 TAAGCATATG
* * * *
24420146 GAGTTCATTCCCAGTCTAAGATCGGACCG-GATCGAGGGTTGCGACAGCAGGATTGACAGCACGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCGAGACCGAGGGTTGTGGCAGCAGGATTGACAGCAC-C
* * * * * * * *
24420210 AGGGGGGACCAGGTGGATCTCTGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGTACG
65 AGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTCAGCGCCCGCACG
* ** **
24420275 CTTGTTTCGTGGGTTGGCTTAGGCATAGG
130 CTCGTTTCGTGGGTTAACTTAGGCATACA
* ** * * *
24420304 GAGCTCATT-CCATGTCTAAGCCCCAG-CC-AGACTGAGGGTTGTGGCAGCAGGATCGGCAGCAC
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCGAGACCGAGGGTTGTGGCAGCAGGATTGACAGCAC
** * * *
24420366 ACAAAAGGGGATCAGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTCAGCGCCCGC
64 -C-AGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTCAGCGCCCGC
* * *
24420431 ACGCTCGTTTTGTGTGTTAACTTATGCATACA
127 ACGCTCGTTTCGTGGGTTAACTTAGGCATACA
* * * *
24420463 GAGTTCATTCCCAGTCTAAGATCAGACCGAG-CCAAGGGTTGTGGTAGTAGGATTGACAGCACGT
1 GAGTTCATTCCCAGTCTAAGATCAGACCGAGACCGAGGGTTGTGGCAGCAGGATTGACAGCAC-C
* * ** ** * *
24420527 AGGGGGGATC-GGATCGATCCCCGATTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCGACCGCAC
65 AGGGGGGATCAGG-TCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTCAGCGCCCGCAC
* * * * ** *
24420591 ACCCATTTCATGGGTTGGCTTAGGCATACG
129 GCTCGTTTCGTGGGTTAACTTAGGCATACA
24420621 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
24420641 CATACGGAGC
Statistics
Matches: 264, Mismatches: 64, Indels: 18
0.76 0.18 0.05
Matches are distributed among these distances:
157 8 0.03
158 134 0.51
159 117 0.44
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGAGACCGAGGGTTGTGGCAGCAGGATTGACAGCACCA
GGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTCAGCGCCCGCACGC
TCGTTTCGTGGGTTAACTTAGGCATACA
Found at i:24421388 original size:26 final size:26
Alignment explanation
Indices: 24421338--24421388 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
24421328 TGACTTAGGC
*
24421338 ATACGGAGTTCATCCCCAGTCTAAGG
1 ATACGGAGTTCATCCCCAGTATAAGG
* *
24421364 ATACGGAGTTCATTCCTAGTATAAG
1 ATACGGAGTTCATCCCCAGTATAAG
24421389 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTATAAGG
Found at i:24421721 original size:26 final size:26
Alignment explanation
Indices: 24421691--24421743 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24421681 GTTGACTTAG
24421691 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24421717 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24421743 G
1 G
24421744 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24422237 original size:158 final size:157
Alignment explanation
Indices: 24421857--24422250 Score: 364
Period size: 158 Copynumber: 2.5 Consensus size: 157
24421847 CGTACGCCCA
* * * **
24421857 TTTCATGGGTTGGCTTAGGCATAGGGAGCACATTCCATGTCTAAGGCCCAATCGGACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAA-GCCCAGCCGGACCGAGGGTT
* * * * ** *
24421922 GTCGCAGCGGGATCGACAGCACGCAGAAGGGGACCGGGTCGATCCTCGGCTTGCGTATTATGCCT
65 GT-GCAGCAGGATCGACAACACGCAGAAGGGGACCGGGTCGATCCCCGGCTTACACATTATACCT
*
24421987 ATTCGACTGGCTCAGCGCCAGAACGCTCG
129 ATTCGACTAGCTCAGCGCCAGAACGCTCG
** * * * ** * * **
24422016 TTTTGTGGGTTGACTTATGCATACGGAGTTCATTCC-CAGTCTAAGATCGGACTGGATTGAGGGT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCAC-GTCTAAGCCCAG-CCGGACCGAGGGT
* * *
24422080 TGTGACAGCAGGATCGATAACACGCAG-GGGGGACCGGG-CTGATCCCCGGCTTACACATTTTAC
64 TGTG-CAGCAGGATCGACAACACGCAGAAGGGGACCGGGTC-GATCCCCGGCTTACACATTATAC
* * * * *
24422143 CTCTTCGA-TCAGCTGAGCGCCCGCACGTTCG
127 CTATTCGACT-AGCTCAGCGCCAGAACGCTCG
* *
24422174 TTTCATGGGTTGGCTTAGGCATATGGAGTACATTCCACGTCTAAGCCCCAGCCGGACCAAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAG-CCCAGCCGGACCGAGGGTT
*
24422239 GTGGTAGCAGGA
65 GT-GCAGCAGGA
24422251 CCGGCAGTGG
Statistics
Matches: 181, Mismatches: 46, Indels: 17
0.74 0.19 0.07
Matches are distributed among these distances:
157 2 0.01
158 109 0.60
159 70 0.39
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.24
Consensus pattern (157 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCAGCCGGACCGAGGGTTG
TGCAGCAGGATCGACAACACGCAGAAGGGGACCGGGTCGATCCCCGGCTTACACATTATACCTAT
TCGACTAGCTCAGCGCCAGAACGCTCG
Found at i:24423012 original size:26 final size:26
Alignment explanation
Indices: 24422975--24423027 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24422965 GTTGACTTAG
24422975 GCATACGAAGTTCA-TCCTCAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
* *
24423001 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
24423027 G
1 G
24423028 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:24423319 original size:355 final size:354
Alignment explanation
Indices: 24422686--24424217 Score: 1296
Period size: 355 Copynumber: 4.4 Consensus size: 354
24422676 AGACCAGACT
** ** * ** * *
24422686 GAGGGTTGCAACAGCAGGATCAACAGCACGTAGGGGGGACTGGGTCAATCCCCGACTT-TCGCAT
1 GAGGGTTGCAGTAGCAGGATCGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGT-GCAT
* * * * * * * * *
24422750 TCTGCCTCTCGGGCCGACTGAGCGCCCGCACGATTGTTTCATGGGTTGGCTTAGGTATAGGGAGT
65 TCTACCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
*
24422815 ACATTCCACATCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGGTAGCGGGATCGAG
130 ACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGGTAGCGGGATCG-G
* * ** * * *
24422880 -AGCACGTAGAGGGGGATCGGGTTGATCCCCGACTTGC-CAATTATGCCTCTCCAGCCGGCTGAT
194 CAGCACGCAGAGGGGGATCGGGCTGATCCTAG-CTTGCGC-ATTATGCCTCTCCGGCTGGCTGAC
* * * * *
24422943 TGCCCGTACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCTCAGTCTAAGCATACG
257 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACG
* *
24423008 GAGTTTATTCCCAGTCTAAGATTGGATCGGATC
322 GAGTTCATTCCCAGTCTAAGATCGGATCGGATC
** * * ** * * *
24423041 GAGGGTTGCAACAACAGGATCGGTAATACGCAGGGGGGACCAGACCGATCCCCGGCTTGGGCATT
1 GAGGGTTGCAGTAGCAGGATCGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGTGCATT
* * *
24423106 CTGCCTCTCCGACCGGTTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTA
66 CTACCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTA
* * * * * * *
24423171 CATTCCATGGCTAAGCCCCAGTCGGACCAAGTGTTGTGGTAGCAGGACCGATAGCGGGATTGGTA
131 CATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGGTAGCGGGATCGGCA
* * * *
24423236 GCACGCAAAGGGGGATCGGGCTGATCGCTGGCTTACGCATTATGCCTCTCCGGTTGGCTGACCGC
196 GCACGCAGAGGGGGATCGGGCTGATC-CTAGCTTGCGCATTATGCCTCTCCGGCTGGCTGACCGC
* *
24423301 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCCTATGGAG
260 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAG
* *
24423366 TTCATTCCCAGTCTAAGATCGGTTCGGACC
325 TTCATTCCCAGTCTAAGATCGGATCGGATC
* * * * * * *
24423396 GAGGGTTGCGGTAGCAAGATCGCCAGCACGCAGGGGGGATCGGGCTGATCCCCGGCTTGTGCATT
1 GAGGGTTGCAGTAGCAGGATCGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGTGCATT
* * * *
24423461 CTACCTCTCCGACTGGCTGAG----CG--C-C-CATTTCGTGGGTTGGCTTAGGCATAGGGAGCT
66 CTACCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG-T
* ** * * *
24423518 -CATTCCATGTCTAAGCCCCAACCGGATCGAGGG-T-T-GT--C---A-C---AGCGGGACCGAC
130 ACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGGTAGCGGGATCGGC
* * * * * * * *
24423570 AGCACGCAGAGAGGGACCGGGCCGATCCTCAGCTTGTGCATTATGCCTCTTCGGCTGGCTCAGCT
195 AGCACGCAGAGGGGGATCGGGCTGATCCT-AGCTTGCGCATTATGCCTCTCCGGCTGGCTGACCG
* * * *
24423635 CCAGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-GA
259 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGA
24423697 ----A-----A---T---A---GA-C----C
324 GTTCATTCCCAGTCTAAGATCGGATCGGATC
** * * ** *
24423705 GAGGGTTGCAGTAGCAGGATCGATAGCACGCAGTGGGGACCGGGTTGATCCCCGACTTGCGCATT
1 GAGGGTTGCAGTAGCAGGATCGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGTGCATT
* * * ** *
24423770 CTACCTCTCCGATCAGCTGAGCGCCCGTTCGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTA
66 CTACCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTA
* * * * * *
24423835 CATTGCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGCTAGCAAGATCGGCAACGGGATCGGCA
131 CATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGGTAGCGGGATCGGCA
* * * * * *
24423900 GTACACAGAGGGAGATCGGGCTAAACCTTAGCTTGCGCATTATGCCTCTCTGATCGACCTCTACG
196 GCACGCAGAGGGGGATCGGGCTGATCC-TAGCTTGCGCATTATGCCTCTC----CG---GCT--G
* * * *
24423965 GCTGACTGAGCGTCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATC
251 GCTGAC----CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTC
* * *
24424030 TAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGGATC
312 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATC
* ** * * *
24424073 GAGGGTTGCTGTAGCAGGATCGGCAGCACGCAGGGGGTTCGA-GCCAATCCTCGACTTGTGCATT
1 GAGGGTTGCAGTAGCAGGATCGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGTGCATT
** * * * *
24424137 CTACCTCTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
66 CTACCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTA
*
24424202 CA-TCCCCAGTCTAAGC
131 CATTCCAC-GTCTAAGC
24424218 ATATTGAGTT
Statistics
Matches: 938, Mismatches: 171, Indels: 124
0.76 0.14 0.10
Matches are distributed among these distances:
309 75 0.08
313 3 0.00
314 1 0.00
315 1 0.00
316 2 0.00
317 55 0.06
318 1 0.00
319 1 0.00
320 2 0.00
322 1 0.00
323 1 0.00
325 1 0.00
326 1 0.00
328 1 0.00
329 48 0.05
330 1 0.00
332 2 0.00
333 2 0.00
334 3 0.00
335 111 0.12
336 2 0.00
338 6 0.01
339 1 0.00
342 53 0.06
343 2 0.00
344 3 0.00
345 3 0.00
346 1 0.00
347 54 0.06
348 2 0.00
349 2 0.00
351 2 0.00
354 2 0.00
355 364 0.39
356 3 0.00
357 1 0.00
360 1 0.00
363 2 0.00
364 1 0.00
366 3 0.00
367 82 0.09
368 35 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (354 bp):
GAGGGTTGCAGTAGCAGGATCGGCAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGTGCATT
CTACCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTA
CATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGGTAGCGGGATCGGCA
GCACGCAGAGGGGGATCGGGCTGATCCTAGCTTGCGCATTATGCCTCTCCGGCTGGCTGACCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCGGATCGGATC
Found at i:24423733 original size:159 final size:149
Alignment explanation
Indices: 24423362--24423795 Score: 365
Period size: 159 Copynumber: 2.8 Consensus size: 149
24423352 CTAAGCCTAT
** * * *
24423362 GGAGTTCATTCCCAGTCTAAGATCG-GTTCGGACCGAGGGTTGCGGTAGCAAGATCGCCAGCACG
1 GGAGTTCATTCCCAGTCTAAGATCGAAAT-GGACCGAGGGTTGCAGTAGCAGGATCGACAGCACG
* * * *
24423426 CAGGGGGGATCGGGCTGATCCCCGGCTTGTGCATTCTACCTCTCCGACTGGCTGAGCGCCCATTT
65 CA-GGGGGACCGGGCCGATCCCCAGCTTGTGCATTATACCTCTCCGACTGGCTGAGCGCCCATTT
* *
24423491 CGTGGGTTGGCTTAGGCATAG
129 CGTGGGTTGACTTAGGCATAC
* ** * ** * * * *
24423512 GGAGCTCATT-CCATGTCTAAGCCCCAACCGGATCGAGGGTTGTCA-CAGCGGGACCGACAGCAC
1 GGAGTTCATTCCCA-GTCTAAGATCGAAATGGACCGAGGGTTG-CAGTAGCAGGATCGACAGCAC
* * * *
24423575 GCAGAGAGGGACCGGGCCGATCCTCAGCTTGTGCATTATGCCTCTTCGGCTGGCTCAGCTCCAGC
64 GCAG-G-GGGACCGGGCCGATCCCCAGCTTGTGCATTATACCTCTCCGACTGGCT--G----AG-
* * *
24423640 ACGCTCGTTTCGTGGGTTGACTTATGCATAC
120 -CGCCCATTTCGTGGGTTGACTTAGGCATAC
* *
24423671 GGAGTTCATTCCCAGTCTAAGATCGAAATAGACCGAGGGTTGCAGTAGCAGGATCGATAGCACGC
1 GGAGTTCATTCCCAGTCTAAGATCGAAATGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGC
** * * *
24423736 AGTGGGGACCGGGTTGATCCCC-GACTTGCGCATTCTACCTCTCCGA-TCAGCTGAGCGCCC
66 AG-GGGGACCGGGCCGATCCCCAG-CTTGTGCATTATACCTCTCCGACT-GGCTGAGCGCCC
24423796 GTTCGCTCGT
Statistics
Matches: 217, Mismatches: 50, Indels: 34
0.72 0.17 0.11
Matches are distributed among these distances:
149 4 0.02
150 50 0.23
151 41 0.19
152 2 0.01
153 1 0.00
156 1 0.00
157 4 0.02
158 37 0.17
159 74 0.34
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (149 bp):
GGAGTTCATTCCCAGTCTAAGATCGAAATGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGC
AGGGGGACCGGGCCGATCCCCAGCTTGTGCATTATACCTCTCCGACTGGCTGAGCGCCCATTTCG
TGGGTTGACTTAGGCATAC
Found at i:24423827 original size:158 final size:157
Alignment explanation
Indices: 24423362--24423838 Score: 429
Period size: 158 Copynumber: 3.1 Consensus size: 157
24423352 CTAAGCCTAT
** * * *
24423362 GGAGTTCATTCCCAGTCTAAGATCG-GTTCGGACCGAGGGTTGCGGTAGCAAGATCGCCAGCACG
1 GGAGTTCATTCCCAGTCTAAGATCGAAAT-GGACCGAGGGTTGCAGTAGCAGGATCGACAGCACG
* * * *
24423426 CAGGGGGGATCGGGCTGATCCCCGGCTTGTGCATTCTACCTCTCCGACTGGCTGAGCGCCCATT-
65 CAGAGGGGACCGGGCTGATCCCCGACTTGTGCATTCTACCTCTCCGACTGGCTGAGCGCCCGTTC
*
24423490 --TCG----TGGGTTGGCTTAGGCATAG
130 GCTCGTTTCTGGGTTGGCTTAGGCATAC
* ** * ** * * * *
24423512 GGAGCTCATT-CCATGTCTAAGCCCCAACCGGATCGAGGGTTGTCA-CAGCGGGACCGACAGCAC
1 GGAGTTCATTCCCA-GTCTAAGATCGAAATGGACCGAGGGTTG-CAGTAGCAGGATCGACAGCAC
* * * * * * * * *
24423575 GCAGAGAGGGACCGGGCCGATCCTC-AGCTTGTGCATTATGCCTCTTCGGCTGGCTCAGCTCCAG
64 GCAGAG-GGGACCGGGCTGATCCCCGA-CTTGTGCATTCTACCTCTCCGACTGGCTGAGCGCCCG
** * *
24423639 CACGCTCGTTTCGTGGGTTGACTTATGCATAC
127 TTCGCTCGTTTC-TGGGTTGGCTTAGGCATAC
* *
24423671 GGAGTTCATTCCCAGTCTAAGATCGAAATAGACCGAGGGTTGCAGTAGCAGGATCGATAGCACGC
1 GGAGTTCATTCCCAGTCTAAGATCGAAATGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGC
* * * *
24423736 AGTGGGGACCGGGTTGATCCCCGACTTGCGCATTCTACCTCTCCGA-TCAGCTGAGCGCCCGTTC
66 AGAGGGGACCGGGCTGATCCCCGACTTGTGCATTCTACCTCTCCGACT-GGCTGAGCGCCCGTTC
24423800 GCTCGTTTCATGGGTTGGCTTAGGCATAC
130 GCTCGTTTC-TGGGTTGGCTTAGGCATAC
* *
24423829 GAAGTACATT
1 GGAGTTCATT
24423839 GCACGTCTAA
Statistics
Matches: 246, Mismatches: 64, Indels: 26
0.73 0.19 0.08
Matches are distributed among these distances:
149 3 0.01
150 47 0.19
151 45 0.18
154 3 0.01
157 1 0.00
158 78 0.32
159 66 0.27
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GGAGTTCATTCCCAGTCTAAGATCGAAATGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGC
AGAGGGGACCGGGCTGATCCCCGACTTGTGCATTCTACCTCTCCGACTGGCTGAGCGCCCGTTCG
CTCGTTTCTGGGTTGGCTTAGGCATAC
Found at i:24424190 original size:183 final size:184
Alignment explanation
Indices: 24423956--24424388 Score: 539
Period size: 183 Copynumber: 2.4 Consensus size: 184
24423946 TCTCTGATCG
* * ** *
24423956 ACCTCTACGGCTGACTGAGCGTCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 ACCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *
24424021 TCCCCAATCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGGA-TCGAGGGTTGCTGT
66 TCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGC
* * *
24424085 AGCAGGATCGGCAGCACGCA-GGGGGTTCGAGCCAATCCTC-GACTTGTGCATTCT
130 AGCAGGATCGACAGCACGCAGGGGGGATCGAGCCAATCCCCAG-CTTGTGCATTCT
* **
24424139 ACCTCTCCGGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 ACCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* ** *
24424204 TCCCCAGTCTAAGCATATTGAGTTCATTCCCATTCTAAGATCAGACCGGACTGAGGGTTGCGGCA
66 TCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCA
* * * *
24424269 GCCGGATCGATAGCACGCAGGGGGGATCGGGCCAATCCCCAGCTTGTGTATTCT
131 GCAGGATCGACAGCACGCAGGGGGGATCGAGCCAATCCCCAGCTTGTGCATTCT
* * * * * * * * *
24424323 GCCTCTCCGGCCGACTGAGCGCTCGCACGCCCATTTCGTGGGTTGGCTTAGACATAGGGAGCTCA
1 ACCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
24424388 T
66 T
24424389 TCCATGTCTA
Statistics
Matches: 212, Mismatches: 35, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
183 128 0.60
184 83 0.39
185 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.24
Consensus pattern (184 bp):
ACCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCA
GCAGGATCGACAGCACGCAGGGGGGATCGAGCCAATCCCCAGCTTGTGCATTCT
Found at i:24424526 original size:159 final size:157
Alignment explanation
Indices: 24424223--24424717 Score: 435
Period size: 158 Copynumber: 3.1 Consensus size: 157
24424213 TAAGCATATT
* * ** ** * * * *
24424223 GAGTTCATTCCCAT-TCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCCGGATCGATAGCACGC
1 GAGTTCATT-CCATGTCTAAGACCAGACCAGACCAAGGGTTGTAGCAGCAGGACCGACAGCACGT
* * * * * * * * * * *
24424287 AGGGGGGATCGGGCCAATCCCC-AGCTTGTGTATTCTGCCTCTCCGGCCGACTGAGCGCTCGCAC
65 AGGGGGGATCGGGCCGATCCCCGA-CTTGCGCATTATGCCTCTTCGACCGGCTCAACGCCCGTAC
* * *
24424351 GCCCATTTCGTGGGTTGGCTTAGACATAGG
129 GCTCGTTTCGTGGGTTGGCTTAG-CATACG
* * * * * *
24424381 GAGCTCATTCCATGTCTAGGCCCCA-ACC-GAACCGAGGGTTGTGGCAG-TGAGACCGACAGCAC
1 GAGTTCATTCCATGTCTAAG-ACCAGACCAG-ACCAAGGGTTGTAGCAGCAG-GACCGACAGCAC
*
24424443 GTAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTCAACGTCCGT
63 GTAG-GGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTCAACGCCCGT
*
24424508 ACGCTCGTTTCGTGGGTTGACTTATGCATACG
127 ACGCTCGTTTCGTGGGTTGGCTTA-GCATACG
* * ** * *
24424540 GAGTTCATTCCCA-GTCTAAGATCAGACCAGACCAAGGGTTGTAGTAGCAGGATTGATAGCATGT
1 GAGTTCATT-CCATGTCTAAGACCAGACCAGACCAAGGGTTGTAGCAGCAGGACCGACAGCACGT
* * * * ** * *
24424604 AGGGGGGATCGGGTCGATCCTCGACTTGTGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCGTACG
65 AGGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTCAACGCCCGTACG
*
24424669 CTCGTTTCATGGGTTGGCTTAGGCATACG
130 CTCGTTTCGTGGGTTGGCTTA-GCATACG
24424698 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
24424718 CATATGGAGC
Statistics
Matches: 275, Mismatches: 50, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
157 9 0.03
158 142 0.52
159 117 0.43
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GAGTTCATTCCATGTCTAAGACCAGACCAGACCAAGGGTTGTAGCAGCAGGACCGACAGCACGTA
GGGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTCAACGCCCGTACGC
TCGTTTCGTGGGTTGGCTTAGCATACG
Found at i:24426175 original size:26 final size:26
Alignment explanation
Indices: 24426146--24426198 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24426136 TTTGACTTAG
24426146 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24426172 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24426198 G
1 G
24426199 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24426348 original size:368 final size:366
Alignment explanation
Indices: 24425400--24426348 Score: 1152
Period size: 367 Copynumber: 2.6 Consensus size: 366
24425390 TTATTTCGTG
* * *
24425400 GGTTAACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCGTATGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
** * *
24425465 TCGAAATGGATCGAGGGTTACGGCAGTAGGATTGGCAGCACGCAGGGGGGACCGGGACGATCCCC
66 TCGAACCGGAT-GAGGGTTACGGCAGTAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCC
* * * * * * *
24425530 GGCTTGCGCATTTTGCCTCTCTGGCCAGCTT-AACGCCCACACGCTCGTTTCGTGAGTTGGCTTA
130 GGCTTGCGCATTCTGCCTTTCCGGCC-GGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
* **
24425594 GGCATACAGAGTACATTCCATGTCTAAGCCCCAGCCTAACCAAGGGTTGTGGCAACAGGACCGAC
194 GGCATACGGAGTACATTCCACATCTAAGCCCCAGCCTAACCAAGGGTTGTGGCAACAGGACCGAC
* * * * *
24425659 AGTGGGATCGGCAGCACACAGAGGAGGATCGGGCTGATCCCTAGCTTGCGCATATGCCTCTTCGA
259 AGCGGGATCGACAGCACACAGAGGAGGATCAGGCTGATCCCTAGCTTGCGCATATACCTCTTCAA
* * *
24425724 CCGACCTCTCCGGTCGACTGAGCGCCCGTATGCTCGTTTCATT
324 CCGACCTCTCCGATCGACTGAGCACCCGCATGCTCGTTTCATT
* *
24425767 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAATCGAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
* * * * **
24425832 TCGAACCGGATTGAGGATTGCAGCAGTAGGATCGGCAACACGCAGGGGGGACCGGGCCGATCCTT
66 TCGAACCGGA-TGAGGGTTACGGCAGTAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCC
* * * * * * * *
24425897 GGCTTGCGCATTCTACCTTTTCGGTCGGCTGAGTGCCCGCACACTCATTTTGTGGGTTGGCTTAG
130 GGCTTGCGCATTCTGCCTTTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
24425962 GTATACGGAGTACATTCCACATCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCAGGACCGAC
195 GCATACGGAGTACATTCCACATCTAAGCCCCAGCCT-AACCAAGGGTTGTGGCAACAGGACCGAC
* * * *
24426026 AGCGGGATCGACAGTACGCAGAGGGGGATCAGGCTGATCCCTGGCTTGCTG-ATTATACCTCTTC
259 AGCGGGATCGACAGCACACAGAGGAGGATCAGGCTGATCCCTAGCTTGC-GCA-TATACCTCTTC
* * * ** * *
24426090 AACTGGCGTCTCCGATCGGTTGAGCACCCGCATGCTTGTTTC-GT
322 AACCGACCTCTCCGATCGACTGAGCACCCGCATGCTCGTTTCATT
* *
24426134 GTTTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
1 G-GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAG
* ** ** * * *
24426199 ATCGAACCGGACTGAGGGTTACGGTAACAGGATCGATAGCACGTAGGTGGGATCGGGCCGATCCC
65 ATCGAACCGGA-TGAGGGTTACGGCAGTAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCC
* * *
24426264 CGGCTTGCGCATTCTGCCTTTCCGGCCGGTTGAGCGCCCGCACGCCCGTTCCGTGGGTTGCCTTA
129 CGGCTTGCGCATTCTGCCTTTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
*
24426329 GGCATAGGGAGCT-CATTCCA
194 GGCATACGGAG-TACATTCCA
24426349 TGCCTGAGCT
Statistics
Matches: 487, Mismatches: 88, Indels: 13
0.83 0.15 0.02
Matches are distributed among these distances:
366 4 0.01
367 259 0.53
368 223 0.46
369 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (366 bp):
GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
TCGAACCGGATGAGGGTTACGGCAGTAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCG
GCTTGCGCATTCTGCCTTTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
CATACGGAGTACATTCCACATCTAAGCCCCAGCCTAACCAAGGGTTGTGGCAACAGGACCGACAG
CGGGATCGACAGCACACAGAGGAGGATCAGGCTGATCCCTAGCTTGCGCATATACCTCTTCAACC
GACCTCTCCGATCGACTGAGCACCCGCATGCTCGTTTCATT
Found at i:24426537 original size:160 final size:159
Alignment explanation
Indices: 24426172--24426666 Score: 507
Period size: 160 Copynumber: 3.1 Consensus size: 159
24426162 CCCAGTCTAA
* * * ** * * *
24426172 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTACGGTAACAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
* *
24426237 GCACGTAGGTGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCT-TTCCGGCCGGTTGAGCGC
66 GCACGTAGGTGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCCGGCCGGCTGAGCGC
* * *
24426301 CCGCACGCCCGTTCCGTGGGTTGCCTTAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAG
** * * * * * * * * *
24426330 GCATAGGGAGCTCATT-CCATGCCTGAGCTCTAG-TCGGA-TCAAGGGTTGTGGCAGCGGGACCG
1 GCATACAGAGTTCATTCCCA-GTCTAAGAT-TGGACCGGACT-GAGGGTTGTGGCAGCAGGATCG
* * * * * * *
24426392 GCAGCTCGTAGACTGGGATCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTTTCGGCCGGCTCA
63 ACAGCACGTAG-GTGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCCGGCCGGCTGA
* * * *
24426457 ACGCACGCACGCTCGTTTCATGGGTTGACTTAT
127 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
24426490 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
24426555 GCACGTAGGGGGGGATCGAG-TCGACCCCCGGCTTGCACATTCTGCCTC-TCCAGTCGGCTGAGC
66 GCACGTA-GGTGGGATCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTTCCGGCCGGCTGAGC
* *
24426618 GCCCTCACGCTCGTTTCGTGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
24426649 GCATACAGAGTTCATTCC
1 GCATACAGAGTTCATTCC
24426667 ATGTCGAAGC
Statistics
Matches: 264, Mismatches: 63, Indels: 19
0.76 0.18 0.05
Matches are distributed among these distances:
157 4 0.02
158 47 0.18
159 91 0.34
160 117 0.44
161 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGGTGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCCGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:24427406 original size:26 final size:26
Alignment explanation
Indices: 24427377--24427429 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24427367 GTTGACTTAG
24427377 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24427403 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24427429 G
1 G
24427430 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24427775 original size:26 final size:26
Alignment explanation
Indices: 24427745--24427797 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24427735 GTTGACTTAG
24427745 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
24427771 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24427797 G
1 G
24427798 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24428122 original size:159 final size:158
Alignment explanation
Indices: 24427819--24428262 Score: 459
Period size: 159 Copynumber: 2.8 Consensus size: 158
24427809 CTGAGGGTTG
* * * * ** *
24427819 CGACAGCACACAGA-GGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGACCAGCTG
1 CGACAACACGCAGAGGGGGA-CGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGCTG
* * * * * *
24427883 AGCGCCCGCACA-CCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCC
65 AGCGCCCGCA-AGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCAC
* * * *
24427947 CAGCTGGACTGAGGGTTGTGGCAGCGGGAC
129 CAGCCGGACTGAGGGTTGCGACAGCAGGAC
** * * *
24427977 CGGTAACACGCAGAGGGGGATCGGGCCGATCCCCAACTTGCGCATTATGCCTCTTCGGTCGGCTC
1 CGACAACACGCAGAGGGGGA-CGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGCTG
* * * *
24428042 AGCGCCCGCATGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCAT-TCTAAG-AT
65 AGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCAC
* *
24428105 CAGACCGGACTGAGGGTTGCGACAGTAGGAT
129 CAG-CCGGACTGAGGGTTGCGACAGCAGGAC
* * * * ** * *
24428136 TGACAGCACGCTG-GGGGGACTGGGTCGATCCCCGACCCGCGCATTCTACCTCTCCGGTCGGCTG
1 CGACAACACGCAGAGGGGGAC-GGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGCTG
24428200 AGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATAC-AGAGTTCATTCCATGTCTAAGCA
65 AGCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGA-AGTTCATTCCATGTCTAAGCA
24428263 TACAAAGCTC
Statistics
Matches: 233, Mismatches: 45, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
157 6 0.03
158 105 0.45
159 118 0.51
160 4 0.02
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (158 bp):
CGACAACACGCAGAGGGGGACGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGCTGA
GCGCCCGCAAGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACCA
GCCGGACTGAGGGTTGCGACAGCAGGAC
Found at i:24429261 original size:159 final size:159
Alignment explanation
Indices: 24429011--24429463 Score: 462
Period size: 159 Copynumber: 2.9 Consensus size: 159
24429001 AGGGTTGCGA
** * * ** * *
24429011 CAGCAGGATCGGCAGCACGCAG-GGGGGACCAGGCCGATCTTCGGCTTGCGCATTCTACCTCTCC
1 CAGCAGGATCGAAAGCACGCAGAGGGAGACCGGGCCGATCCCCGGCTTGCACATTATACCTCTCC
* * * * * * * * *
24429075 GGCCAGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGGGCTCATTCCATGT
66 GACCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * * *
24429140 CTAAGCCCTAGCCAGACCGAGGGTTGTGG
131 CTAAGCCCGAACCAGACCAAAGGTTATGG
** * * *
24429169 CAGTGGGA-CTGAAAGCACGCAGAGGGAGACCGGGCCGATCCCCGTCTTGCACATTATGCCTCTT
1 CAGCAGGATC-GAAAGCACGCAGAGGGAGACCGGGCCGATCCCCGGCTTGCACATTATACCTCTC
** ** *
24429233 CGGTCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTAACTTATGCATACGGAGTTCATTCCCA-
65 CGACCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAT
** *
24429297 GTCTAAGATCGAACCGGACCAAAGGTTATGG
129 GTCTAAGCCCGAACCAGACCAAAGGTTATGG
* * * * * *
24429328 CAGCAGGATCGACAGCACGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCC
1 CAGCAGGATCGAAAGCACGCAGAGGGAGACCGGGCCGATCCCCGGCTTGCACATTATACCTCTCC
* ** *
24429393 GACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGC
66 GACCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
24429458 CTAAGC
131 CTAAGC
24429464 ATACGGAGCT
Statistics
Matches: 236, Mismatches: 54, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
157 1 0.00
158 19 0.08
159 212 0.90
160 4 0.02
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (159 bp):
CAGCAGGATCGAAAGCACGCAGAGGGAGACCGGGCCGATCCCCGGCTTGCACATTATACCTCTCC
GACCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCCCGAACCAGACCAAAGGTTATGG
Found at i:24430484 original size:159 final size:159
Alignment explanation
Indices: 24430234--24430686 Score: 471
Period size: 159 Copynumber: 2.9 Consensus size: 159
24430224 AGGGTTGCGA
** * * ** * *
24430234 CAGCAGGATCGGCAGCACGCAG-GGGGGACCAGGCCGATCTTCGGCTTGCGCATTCTACCTCTCC
1 CAGCAGGATCGAAAGCACGCAGAGGGAGACCGGGCCGATCCCCGGCTTGCACATTATACCTCTCC
* * * * * * * * *
24430298 GGCCAGTTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGGGCTCATTCCATGT
66 GACCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * * *
24430363 CTAAGCCCTAGCCAGACCGAGGGTTGTGG
131 CTAAGCCCGAACCAGACCAAAGGTTATGG
* * * *
24430392 CAGCGGGA-CTGAAAGCACGCAGAGGGAGACCGGGCCGATCCCCGTCTTGCACATTATGCCTCTT
1 CAGCAGGATC-GAAAGCACGCAGAGGGAGACCGGGCCGATCCCCGGCTTGCACATTATACCTCTC
** ** *
24430456 CGGTCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTAACTTATGCATACGGAGTTCATTCCCA-
65 CGACCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAT
** *
24430520 GTCTAAGATCGAACCGGACCAAAGGTTATGG
129 GTCTAAGCCCGAACCAGACCAAAGGTTATGG
* * * * * *
24430551 CAGCAGGATCGACAGCACGCAGGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCC
1 CAGCAGGATCGAAAGCACGCAGAGGGAGACCGGGCCGATCCCCGGCTTGCACATTATACCTCTCC
* ** *
24430616 GACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGC
66 GACCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
24430681 CTAAGC
131 CTAAGC
24430687 ATACGGAGCT
Statistics
Matches: 238, Mismatches: 52, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
157 1 0.00
158 20 0.08
159 213 0.89
160 4 0.02
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (159 bp):
CAGCAGGATCGAAAGCACGCAGAGGGAGACCGGGCCGATCCCCGGCTTGCACATTATACCTCTCC
GACCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCCCGAACCAGACCAAAGGTTATGG
Found at i:24431803 original size:26 final size:26
Alignment explanation
Indices: 24431764--24431816 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24431754 GATGACTTAC
*
24431764 GCATACGGAGTTCATCCCCACTCTAA
1 GCATACGGACTTCATCCCCACTCTAA
* *
24431790 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATCCCCACTCTAA
24431816 G
1 G
24431817 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCACTCTAA
Found at i:24432270 original size:159 final size:157
Alignment explanation
Indices: 24431790--24432292 Score: 469
Period size: 160 Copynumber: 3.2 Consensus size: 157
24431780 CCCACTCTAA
* * * * * *
24431790 GCATACGGACTTCATTCCCA-GTCTAAGATCAAACTGGATCGAGGGTT-AGGCAGCAGGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
** * * * * *
24431853 AG-CATGCGGGGGGGACCAGGCCGATCCTCGGCTTGCACATTTTGCCTCTCCGACCGGCTGAGCG
65 AGACAT-AAGAGGGGATCGGGCCGATCCT-GGCTTGCACATTATGCCTCTCCGGCCGGCTGAGCG
* * * *
24431917 CCCGTATGCCCGTTTCGTGGGTTGGCTTTG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * *
24431947 GCATAGGGTGCTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
24432011 AGTACGTAA-AGGGGGATCAGGGCCGATCCCCGACTTGCACATTATGCATCTTCGGCCGGCTCAG
65 AG-ACATAAGA-GGGGATC-GGGCCGAT-CCTGGCTTGCACATTATGCCTCTCCGGCCGGCTGAG
* * * *
24432075 CGCCCGCACGCTTGTTTCATGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
24432107 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
24432171 AGCACATAAGAGGGGATCGGGTCAATCTCTGGCTTGCACATTCTACCTCTCCGGCCGGTTGAACG
65 AG-ACATAAGAGGGGATCGGGCCGATC-CTGGCTTGCACATTATGCCTCTCCGGCCGGCTGAGCG
*
24432236 GCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
24432266 GCATACGGAATTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
24432293 CATACGGAGC
Statistics
Matches: 271, Mismatches: 62, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 30 0.11
158 21 0.08
159 90 0.33
160 121 0.45
161 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GACATAAGAGGGGATCGGGCCGATCCTGGCTTGCACATTATGCCTCTCCGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24432306 original size:26 final size:26
Alignment explanation
Indices: 24432266--24432318 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24432256 GTTGGCTTAG
*
24432266 GCATACGGAATTCATTCC-ATGTCTAA
1 GCATACGGAACTCATTCCTA-GTCTAA
*
24432292 GCATACGGAGCTCATTCCTAGTCTAA
1 GCATACGGAACTCATTCCTAGTCTAA
24432318 G
1 G
24432319 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAACTCATTCCTAGTCTAA
Found at i:24433057 original size:26 final size:26
Alignment explanation
Indices: 24433021--24433071 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
24433011 TTGACTTAGG
* *
24433021 CATATGGAGTTCATCCCCAGTCTAAA
1 CATACGGAGTTCATCCCAAGTCTAAA
*
24433047 CATACGGAGTTCATTCCAAGTCTAA
1 CATACGGAGTTCATCCCAAGTCTAA
24433072 GATTGGACTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCAAGTCTAAA
Found at i:24433799 original size:159 final size:158
Alignment explanation
Indices: 24433426--24433799 Score: 353
Period size: 159 Copynumber: 2.4 Consensus size: 158
24433416 CATACAAAGT
* * * * *
24433426 TCATTCCCAATATAAGATCGGATCAGACCGAGGGTTGTGACAGCAAGATCGATAGCAAGCAGGGG
1 TCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGCAAGATCGACAGCAAGCAGGGG
* * * * * * * *
24433491 GGATCGGGCTGATCCCCAGCTTACGCATTCTGCCTCTCCAGTCAGCTGAGCGCCCGCATGCCTGT
66 GGACCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCACTCAGCTCAGCGCCCGCACGCCTAT
* *
24433556 TTCGTGGGTTGGCTTAGGCATAGGGAGC
131 TTCGTGGGTTGACTTAGGCATACGGAGC
** * * * *** * *
24433584 TCATT-CCATGTCTAAGCCCTAG-CCGGACTGAGGGTTGTGCCAGTGGGA-CTGGCAGCATGCAG
1 TCATTCCCA-GTCTAAGATC-AGATCGGACCGAGGGTTGTGACAGCAAGATC-GACAGCAAGCAG
* * * * *
24433646 AGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGACT-GGCTCAGCGCTCGCACG
63 -GGGGGACCGGGCCGATCCCCAGCTTACACATTATGCCTC-TCCACTCAGCTCAGCGCCCGCACG
*
24433710 -CTCATTTCGTGGGTTGACTTATGCATACGGAGC
126 CCT-ATTTCGTGGGTTGACTTAGGCATACGGAGC
* **
24433743 TCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAAGATCGACAGCA
1 TCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGCAAGATCGACAGCA
24433800 CATAGGAGGG
Statistics
Matches: 165, Mismatches: 42, Indels: 17
0.74 0.19 0.08
Matches are distributed among these distances:
157 4 0.02
158 43 0.26
159 110 0.67
160 8 0.05
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
TCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGACAGCAAGATCGACAGCAAGCAGGGG
GGACCGGGCCGATCCCCAGCTTACACATTATGCCTCTCCACTCAGCTCAGCGCCCGCACGCCTAT
TTCGTGGGTTGACTTAGGCATACGGAGC
Found at i:24433903 original size:26 final size:26
Alignment explanation
Indices: 24433863--24433915 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24433853 GTTGGCTTAG
*
24433863 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGGTCATTCCATGTCTAA
*
24433889 GCATACGGAGGTCATTCCCTGTCTAA
1 GCATACGGAGGTCATTCCATGTCTAA
24433915 G
1 G
24433916 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCATGTCTAA
Found at i:24434621 original size:26 final size:26
Alignment explanation
Indices: 24434585--24434637 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24434575 GTTGACTTGG
24434585 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
* *
24434611 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
24434637 G
1 G
24434638 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:24435003 original size:26 final size:26
Alignment explanation
Indices: 24434953--24435005 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24434943 GTTGACTTAG
* *
24434953 GCATACGGAGTTCATCCCTGATCTAA
1 GCATACGAAGTTCATCCCAGATCTAA
24434979 GCATACGAAGTTCATTCCCAG-TCTAA
1 GCATACGAAGTTCA-TCCCAGATCTAA
24435005 G
1 G
24435006 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCAGATCTAA
Found at i:24436348 original size:690 final size:691
Alignment explanation
Indices: 24434912--24436574 Score: 2201
Period size: 690 Copynumber: 2.4 Consensus size: 691
24434902 GCCTCTCTGA
* * * * *
24434912 CCGGTTGAGCTCCCGCACGCTCGTTTGGTGGGTTGACTTAGGCATACGGAGTTCATCCCT-GATC
1 CCGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCTAG-TC
* * * *
24434976 TAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAGGGTTGCAGCAGTAGGATCG
65 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAGCAGTAGGATCG
* * * * * * * *
24435041 ACAGCACATAGGGGAGACCGAGTCGATCCCCGGCTTACACATTATGTCTCTCTGGCTGGCTGAGT
130 ACAACAC-TAGGGG-GACCGAGTTGATCCCCGACTTGCGCATTCTGCCTCTCTGGCTGGCTGAGC
* * * *
24435106 GCCCCACGCTCATTTCATAGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGCC
193 GCCCCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCTAGCT
*
24435171 GGACCGAGGGTTATGGCAGTAGGACTTAGGCATATGAAAATGTGCTTGAACCCACCTACCACCCG
258 GGACCGAGGGTTATGGCAGCAGGACTTAGGCATATGAAAATGTGCTTGAACCCACCTACCACCCG
* * ** * * *
24435236 TTTAATCCCCGACTTGCGCATCCTGTCTCTCTAGTCGGTTGAGCTCCTGCACGCTCATTTCGTGG
323 TTCAATCCCCGACTTACGCATCCTACCTCTCTAGTCGGTTGAGCGCCTGCACACTCATTTCATGG
* *
24435301 GTTGACTGAGGCATACGGAGTTCATTCCCCAGTCCAAGCATATAGAGTTCATTCCCAGTCTAAGA
388 GTTGACTGAGGCATACGGAGTTCATTCCCCAGTCCAAGCATACAGAATTCATTCCCAGTCTAAGA
* * *
24435366 TCAGACCGGATCGATAGCACGTAGGGGGGACCAAGCCAATCCTCAACTTTCGCATTCTGCCTCTC
453 TCAGACCGGATCGACAACACGTAGGGGGGACCAAGCCAATCCTCAACTTGCGCATTCTGCCTCTC
* * *
24435431 CGGTCGGCTTAGCGCCCGCATGCTCCTTTCGTGGGTTGGCTTAAGCATACAGAGTACATTCCACG
518 CGGGCGGCTTAGCGCACGCATGCTCATTTCGTGGGTTGGCTTAAGCATACAGAGTACATTCCACG
* * * * * * * * *
24435496 TCTAAGTCCCAACCGGACCGAGGGTTGTGGTAGTGAGATAGGCAGCGGGATCTGCAGCACGCAGA
583 TCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGAGAGACAGACAGCGGAATCAGCAGCACACAGA
* * *
24435561 GGGGGATCGGGCTGATCCCTAGCTTGCGCATTATACCTCTTCGG
648 GGGGGATCGGGCTAATCCCCAGCTTACGCATTATACCTCTTCGG
24435605 CCGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCT
1 CCGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCT
* *
24435670 AAGCATACGGAGTTCATTTCCAATCTAAGATCGGACCGGATCGAGGGTTGCAGCAGTAGGATCGA
66 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAGCAGTAGGATCGA
* * *
24435735 TAACACGTAGGGGGACCGAGTTGATCCCTGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGC
131 CAACAC-TAGGGGGACCGAGTTGATCCCCGACTTGCGCATTCTGCCTCTCTGGCTGGCTGAGCGC
* *
24435800 CCCATGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCTAGCTGG
195 CCCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCTAGCTGG
* *
24435865 ACCAAGGGTTATGGCAGCAGGACTTAGGCATATGAAGATGTGCTTGAACCCACCTACCACCCGTT
260 ACCGAGGGTTATGGCAGCAGGACTTAGGCATATGAAAATGTGCTTGAACCCACCTACCACCCGTT
* * * * *
24435930 CGATCCTCGGCTTACGCATCCTACCTCTCTGGTCGGTTGAGCGCCTGCACACTCGTTTCATGGGT
325 CAATCCCCGACTTACGCATCCTACCTCTCTAGTCGGTTGAGCGCCTGCACACTCATTTCATGGGT
* *
24435995 TGACTTAGGCATACGGAGTTCA-TCCCCAGTCCAAGCATACGGAATTCA-TCCCTAGTCTAAGAT
390 TGACTGAGGCATACGGAGTTCATTCCCCAGTCCAAGCATACAGAATTCATTCCC-AGTCTAAGAT
* * * ** **
24436058 CGGAGCGGATCGGCAACACGTA-GGGGGACCGGGCTGATCCTCAACTTGCGCATTCTGCCTCTCC
454 CAGACCGGATCGACAACACGTAGGGGGGACCAAGCCAATCCTCAACTTGCGCATTCTGCCTCTCC
* * *
24436122 GGGCGGCTTAGCGCATGTATGCTCATTTCGTGGGTTGGCTTAGGCATA-AGGAGTACATTCCACG
519 GGGCGGCTTAGCGCACGCATGCTCATTTCGTGGGTTGGCTTAAGCATACA-GAGTACATTCCACG
** * * *
24436186 TCTAAGCCCCAGTCAGACTGAGGGTTGTGGCAGCAG-GACCGACAGTGGAATCAGCAGCACACAG
583 TCTAAGCCCCAACCAGACCGAGGGTTGTGGCAG-AGAGACAGACAGCGGAATCAGCAGCACACAG
* * *
24436250 AGGGGGATGGGGCTAATCCCCAGCTTACGCATTAT-GCTTTTCCGG
647 AGGGGGATCGGGCTAATCCCCAGCTTACGCATTATACCTCTT-CGG
*
24436295 CCGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCT
1 CCGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCT
* * * * * * * *
24436360 AAGCATACGGAGTTCATTGCCAGTATAAGATCGAATCGGATC-AAGGTTACGGCAGCAGGATCGA
66 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAGCAGTAGGATCGA
* * * * * *
24436424 CAAAACTCAAGGGGGATCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGACTGAGCG
131 CAACACT--AGGGGGACCGAGTTGATCCCCGACTTGCGCATTCTGCCTCTCTGGCTGGCTGAGCG
** * * * *
24436489 TCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTACATTCCATGTCTAAGCCCCAG-T
194 -CCCCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCTAGCT
* *
24436553 CAGACCGAGGGTTATGGTAGCA
258 -GGACCGAGGGTTATGGCAGCA
24436575 AGATCGGCAA
Statistics
Matches: 847, Mismatches: 114, Indels: 20
0.86 0.12 0.02
Matches are distributed among these distances:
688 1 0.00
689 27 0.03
690 330 0.39
691 123 0.15
692 238 0.28
693 127 0.15
694 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (691 bp):
CCGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCAGCAGTAGGATCGA
CAACACTAGGGGGACCGAGTTGATCCCCGACTTGCGCATTCTGCCTCTCTGGCTGGCTGAGCGCC
CCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCTAGCTGGA
CCGAGGGTTATGGCAGCAGGACTTAGGCATATGAAAATGTGCTTGAACCCACCTACCACCCGTTC
AATCCCCGACTTACGCATCCTACCTCTCTAGTCGGTTGAGCGCCTGCACACTCATTTCATGGGTT
GACTGAGGCATACGGAGTTCATTCCCCAGTCCAAGCATACAGAATTCATTCCCAGTCTAAGATCA
GACCGGATCGACAACACGTAGGGGGGACCAAGCCAATCCTCAACTTGCGCATTCTGCCTCTCCGG
GCGGCTTAGCGCACGCATGCTCATTTCGTGGGTTGGCTTAAGCATACAGAGTACATTCCACGTCT
AAGCCCCAACCAGACCGAGGGTTGTGGCAGAGAGACAGACAGCGGAATCAGCAGCACACAGAGGG
GGATCGGGCTAATCCCCAGCTTACGCATTATACCTCTTCGG
Found at i:24436382 original size:26 final size:26
Alignment explanation
Indices: 24436336--24436388 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24436326 GTTGACTTAG
*
24436336 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTATAA
* **
24436362 GCATACGGAGTTCATTGCCAGTATAA
1 GCATACGAAGTTCATCCCCAGTATAA
24436388 G
1 G
24436389 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTATAA
Found at i:24436732 original size:26 final size:26
Alignment explanation
Indices: 24436702--24436754 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24436692 GTTGACTCAG
24436702 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24436728 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24436754 G
1 G
24436755 ATTGAACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24437086 original size:25 final size:26
Alignment explanation
Indices: 24437057--24437108 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24437047 GTTGACTTAG
24437057 GCATAC-GAGTTCATCCCCAGTATAA
1 GCATACAGAGTTCATCCCCAGTATAA
* *
24437082 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTATAA
24437108 G
1 G
24437109 ATCCGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTATAA
Found at i:24437454 original size:26 final size:26
Alignment explanation
Indices: 24437424--24437476 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24437414 GTTGACTTAG
24437424 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24437450 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24437476 G
1 G
24437477 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24437998 original size:342 final size:343
Alignment explanation
Indices: 24436080--24438135 Score: 1531
Period size: 342 Copynumber: 5.8 Consensus size: 343
24436070 GCAACACGTA
* * * * * * * ** * * *
24436080 GGGGGACCGGGCTGATCCTCAACTTGCGCATTCTGCCTCTCCGGGCGGCTTAGCGCATGTATGCT
1 GGGGGACCGAGCCGATCC-CAGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCC
* * * *
24436145 CATTTCGTGGGTTGGCTTAGGCATAAGGAGTACATTCCACGTCTAAGCCCCAGTCAGACTGAGGG
65 CATTTCGTGGGTTGGCTTAGGCATACGGAGCACATTCCATGTCTAAGCCCCAGTCGGACTGAGGG
* ** * **
24436210 TTGTGGCAGCAGGACCGACAGT-GGAATCAGCAGCACACAGAGGGGGATGGGGCTAATCCCCAGC
130 TTGTGGCAGC-GG---GAC--TCGG--T----AGCACGCAGAGGGGGACCGGGCTGAT-CCTGGC
* * * * * *
24436274 TTACGCATTATG-CTTTTCCGGC-CGGCTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGG
182 TTGCGCATTATGCCTCTTCC-ACTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
* * * * * * *
24436337 CATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTGCCAGTATAAGATCGAATCGGATC
246 CATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACC
* * * * ** * *
24436402 -AAGGTTACGGCAGCAGGATCGACAAAACTCAA
311 GAGGGTTGCGACAGTAGGATCGACAGCACGCAG
* * * * * * * * *
24436434 GGGGGATCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGACTGAGCGTCTGCACGCT
1 GGGGGACCGAGCCGATCCCAG-CTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCC
* * * * * *
24436499 CGTTTCGTGGGTTGACTTAGGCATACAGAGTACATTCCATGTCTAAGCCCCAGTCAGACCGAGGG
65 CATTTCGTGGGTTGGCTTAGGCATACGGAGCACATTCCATGTCTAAGCCCCAGTCGGACTGAGGG
* * ** * * * * * *
24436564 TTATGGTAGCAAGATCGGCAACGGGATCGACAACACGTAGAGAGAGACCGGGCGGATCCTCGACT
130 -T-T-GTGGC-AG--CGG-GAC----TCGGTAGCACGCAGAGGGGGACCGGGCTGATCCT-GGCT
** * ** *
24436629 TGCATATTATGCCTCTCGACCGGCCTCTC-CGATCGGCTGAGCGTTCGCATGCTCGTTTCATGGG
183 TGCGCATTATGCCTCT---------TC-CAC--TCGGCTCAGCGCCCGCACGCTCGTTTCATGGG
* *
24436693 TTGACTCAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-
236 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
* * * ** * * *
24436757 TGAACCGAATTGAGGGTTGCGATAGCAGGATCGATAGCACGCAG
301 GGATCAG-ACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAG
** * * * ** * **
24436801 GGGGGATGGGGCCGATCCTCAGCTTG-ACATTCTGCTTCTCTGGCCGGGTGAGCGCCTGCACGTT
1 GGGGGACCGAGCCGATCC-CAGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCC
*
24436865 CATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGACTGAGGG
65 CATTTCGTGGGTTGGCTTAGGCATACGGAGCACATTCCATGTCTAAGCCCCAGTCGGACTGAGGG
* * * * * *
24436930 TTGTGGCAGCGAG-TTCGGTAGCACGCAAAAGAGGACCGGGCTGATCCCCGGCTTGCGCATTATG
130 TTGTGGCAGCGGGACTCGGTAGCACGCAGAGGGGGACCGGGCTGAT-CCTGGCTTGCGCATTATG
* * * *
24436994 CCTCTTCGATCGGCCTTTCCAATCGGCTAAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGC
194 ---C--C--T----C-TTCCACTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* * * * *
24437059 ATAC-GAGTTCATCCCCAGTATAAGCATACAGAGTTCATTCCCAGTCTAAGATCCGACCAGATCA
247 ATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCG
* ** ** * *
24437123 AGGGTTACGGTAAAAGGATTGGCAGCACGCAG
312 AGGGTTGCGACAGTAGGATCGACAGCACGCAG
* ** * * * * * **
24437155 GGGGTACTTAGCCGATCACC-GACTTACGCATTCTGCCTCTCTGGTCGACTAAGTGTCCATACGC
1 GGGGGACCGAGCCGATC-CCAG-CTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGC
* * * ** * * *
24437219 TCATTTTGTGGGTTGGCTTAGGCATACAGAAAACATTCCACGTCTAAGCCCCAGTCGAACCGAGG
64 CCATTTCGTGGGTTGGCTTAGGCATACGGAGCACATTCCATGTCTAAGCCCCAGTCGGACTGAGG
* * *
24437284 GTTGTGGCAACAAGACCGGCAGCGAGATCGGTAGCACGCAGAGGGGGACCGGGTTGATCCTCGAC
129 GTTGTGG---C-AG--C-G--G-GA-CTCGGTAGCACGCAGAGGGGGACCGGGCTGATCCT-GGC
* * *
24437349 TTGCGTATTATGCCTCTCCGGCCAGCCTCTTCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGG
182 TTGCGCATTATGCCTCT---TCCA-------C--TCGGCTCAGCGCCCGCACGCTCGTTTCATGG
*
24437414 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
235 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
* * *
24437479 CGGATCGGACCGAGGTTTGCGACAGTAGGATCGACAGCACGTAG
300 CGGATCAGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAG
* * *
24437523 GGGGGACCGCA-ACGATCCCCCA-CTTGCGCATTCTGCCTCT-TCGGCCGACTGAGTGCCCGCAT
1 GGGGGACCG-AGCCGAT--CCCAGCTTGCGCATTCTGCCTCTCT-GGCCGACTGAGCGCCCGCAC
* * * *
24437585 GCCCATTTCATGGGTTGGCTTAGGCATAAGGAGCTCATTCCATCTCTAAGCCCCAGTCGGACTGA
62 GCCCATTTCGTGGGTTGGCTTAGGCATACGGAGCACATTCCATGTCTAAGCCCCAGTCGGACTGA
* * * * * *
24437650 GGGTTGTGGCAGTGGGACT-GGCAGCACGCAGA-GGGGACTGGGCCGATCCCTAGCTTGTGCATT
127 GGGTTGTGGCAGCGGGACTCGGTAGCACGCAGAGGGGGACCGGGCTGAT-CCTGGCTTGCGCATT
* *
24437713 ATGCCTCTTCCACT-GGCTCAGCGCCCACACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGT
191 ATGCCTCTTCCACTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
*
24437777 TCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCG
256 TCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCG
*
24437842 ACAGTAGGATCGACAGCAAGCAG
321 ACAGTAGGATCGACAGCACGCAG
* * * * * *
24437865 AGGGGACCGAGCTGATCTCCAGCTTGCGCATTCTACCTCTAC-GGTCGGCTGAGCGCCCGCATGC
1 GGGGGACCGAGCCGATC-CCAGCTTGCGCATTCTGCCTCT-CTGGCCGACTGAGCGCCCGCACGC
* * * *
24437929 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCACATTCCATGTCTAAGCCCTAGCCGGACTGAGG
64 CCATTTCGTGGGTTGGCTTAGGCATACGGAGCACATTCCATGTCTAAGCCCCAGTCGGACTGAGG
* * *
24437994 GTTGTGGTAGCGGGACT-AGTAGCATGCAGAGGGGGACCGGGCTGATCCTCGGCTTGCGCATTAT
129 GTTGTGGCAGCGGGACTCGGTAGCACGCAGAGGGGGACCGGGCTGATCCT-GGCTTGCGCATTAT
* * * * * * *
24438058 GCCTTTTCGACT-GGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTACGCATACGAAGCTC
193 GCCTCTTCCACTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
*
24438122 ATTCCCAGTCTAAG
258 ATCCCCAGTCTAAG
24438136 ATCAGACCGG
Statistics
Matches: 1364, Mismatches: 253, Indels: 181
0.76 0.14 0.10
Matches are distributed among these distances:
340 1 0.00
341 4 0.00
342 262 0.19
343 94 0.07
345 1 0.00
352 3 0.00
353 4 0.00
354 258 0.19
355 170 0.12
356 18 0.01
357 11 0.01
358 8 0.01
359 7 0.01
360 5 0.00
361 3 0.00
362 4 0.00
363 5 0.00
364 6 0.00
365 8 0.01
366 180 0.13
367 127 0.09
368 181 0.13
369 3 0.00
370 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (343 bp):
GGGGGACCGAGCCGATCCCAGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCCC
ATTTCGTGGGTTGGCTTAGGCATACGGAGCACATTCCATGTCTAAGCCCCAGTCGGACTGAGGGT
TGTGGCAGCGGGACTCGGTAGCACGCAGAGGGGGACCGGGCTGATCCTGGCTTGCGCATTATGCC
TCTTCCACTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATC
CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGT
AGGATCGACAGCACGCAG
Found at i:24438093 original size:159 final size:158
Alignment explanation
Indices: 24437828--24438294 Score: 442
Period size: 159 Copynumber: 2.9 Consensus size: 158
24437818 GATCGGATCA
* * * * * * *
24437828 GACCGAGGGTTGC-GACAGTAGGATCGACAGCAAGCAGAGGGGACCGAGCT-GATCTCCAGCTTG
1 GACCGAGGGTTGCAG-TAGCAGGATAGACAGCACGCAGGGGGGACC-AGGTCGATCCCCAGCTTG
* * ** * * *
24437891 CGCATTCTACCTCTACGGTCGGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAG
64 CGCATTATACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
24437956 GGAGCACATTCCATGTCTAAGCCCTAG-CCG
129 GGAGCTCATTCCATGTCTAAGCCC-AGACCG
* ** * * * * * *
24437986 GACTGAGGGTTGTGGTAGCGGGACTAG-TAGCATGCAGAGGGGGACC-GGGCTGATCCTCGGCTT
1 GACCGAGGGTTGCAGTAGCAGGA-TAGACAGCACGCAG-GGGGGACCAGGTC-GATCCCCAGCTT
* * * * * * * *
24438049 GCGCATTATGCCTTTTCGACTGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTACGCATA
63 GCGCATTATACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* **
24438114 CGAAGCTCATTCCCA-GTCTAAGATCAGACCG
128 CGGAGCTCATT-CCATGTCTAAGCCCAGACCG
* * *
24438145 GACCGAGGGTTGCAGTAGTAGGATCGACAGCACGCAGGGGGGATCAGGTCGATCCCCAGCTTGCG
1 GACCGAGGGTTGCAGTAGCAGGATAGACAGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTGCG
* * *
24438210 CATTCTACCTCTCCGACCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
66 CATTATACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* *
24438275 AGTTCATTCCATATCTAAGC
131 AGCTCATTCCATGTCTAAGC
24438295 ATACGGAGCT
Statistics
Matches: 240, Mismatches: 59, Indels: 20
0.75 0.18 0.06
Matches are distributed among these distances:
157 4 0.02
158 114 0.47
159 119 0.50
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
GACCGAGGGTTGCAGTAGCAGGATAGACAGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTGCG
CATTATACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
AGCTCATTCCATGTCTAAGCCCAGACCG
Found at i:24438259 original size:158 final size:156
Alignment explanation
Indices: 24437792--24438284 Score: 463
Period size: 158 Copynumber: 3.1 Consensus size: 156
24437782 CCCAGTCTAA
* * * * * *
24437792 GCATACAAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGAAGCTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG-TAGTAGGATCGACA
* * * **
24437857 GCAAGCAGAGGGGACCGAG-CTGATCTCCAGCTTGCGCATTCTACCTCTACGGTCGGCTGAGCGC
65 GCAAGCAGGGGGGACAG-GTC-GATCCCCAGCTTGCGCATTCTACCTCTACGACCGGCTGAGCGC
* *
24437921 CCGCATGCCCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * ** *
24437950 GCATAGGGAGCACATT-CCATGTCTAAGCCCTAG-CCGGACTGAGGGTTGTGGTAGCGGGA-CTA
1 GCATACGAAGCTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTG-CGTAGTAGGATCGA
* * * * * * * * * * * *
24438012 GTAGCATGCAGAGGGGGACCGGGCTGATCCTCGGCTTGCGCATTATGCCTTTTCGACTGGCTCAG
63 -CAGCAAGCAG-GGGGGACAGGTC-GATCCCCAGCTTGCGCATTCTACCTCTACGACCGGCTGAG
* * *
24438077 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAC
125 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
24438109 GCATACGAAGCTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGTAGGATCGACA
1 GCATACGAAGCTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GTAGTAGGATCGACA
* * *
24438174 GCACGCAGGGGGGATCAGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGACTGAGCGCC
65 GCAAGCAGGGGGGA-CAGGTCGATCCCCAGCTTGCGCATTCTACCTCTACGACCGGCTGAGCGCC
*
24438239 TGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
24438267 GCATACGGAGTTCATTCC
1 GCATACGAAGCTCATTCC
24438285 ATATCTAAGC
Statistics
Matches: 260, Mismatches: 64, Indels: 22
0.75 0.18 0.06
Matches are distributed among these distances:
157 5 0.02
158 128 0.49
159 122 0.47
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGAAGCTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGTAGTAGGATCGACAG
CAAGCAGGGGGGACAGGTCGATCCCCAGCTTGCGCATTCTACCTCTACGACCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24438307 original size:26 final size:26
Alignment explanation
Indices: 24438267--24438319 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24438257 GTTGGCTTAG
*
24438267 GCATACGGAGTTCATTCCAT-ATCTAA
1 GCATACGGAGCTCATTCC-TCATCTAA
24438293 GCATACGGAGCTCATTCCTCATCTAA
1 GCATACGGAGCTCATTCCTCATCTAA
24438319 G
1 G
24438320 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCTCATCTAA
Found at i:24439381 original size:25 final size:26
Alignment explanation
Indices: 24439330--24439381 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24439320 GTTGACTTAG
*
24439330 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24439356 GCATACAGAGTTCAT-TCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24439381 G
1 G
24439382 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24439726 original size:26 final size:26
Alignment explanation
Indices: 24439696--24439748 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24439686 GTTGATGTAG
24439696 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
24439722 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24439748 G
1 G
24439749 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24440189 original size:26 final size:26
Alignment explanation
Indices: 24440160--24440212 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24440150 GTTGACTTAG
* *
24440160 GCATACGGAATTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAATCTAA
* *
24440186 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAATTCATCCCCAATCTAA
24440212 G
1 G
24440213 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAATCTAA
Found at i:24443257 original size:25 final size:26
Alignment explanation
Indices: 24443223--24443274 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
24443213 TTTGACTTAG
*
24443223 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
24443248 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
24443274 G
1 G
24443275 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:24443617 original size:26 final size:26
Alignment explanation
Indices: 24443587--24443639 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24443577 GTTGACTTAG
24443587 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24443613 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24443639 G
1 G
24443640 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24443972 original size:26 final size:26
Alignment explanation
Indices: 24443942--24443994 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24443932 GTTGACTTAG
*
24443942 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
24443968 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24443994 G
1 G
24443995 ATCGGATTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24444055 original size:355 final size:352
Alignment explanation
Indices: 24443187--24444248 Score: 1126
Period size: 355 Copynumber: 3.0 Consensus size: 352
24443177 TCTGGTCTAC
* *
24443187 TGAGCGCTCCTACGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCA
1 TGAGCG-TCCTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
*
24443251 TACGGAGTTCATTCCCAGTATAAGATCAGATCAGATCGAGGGTTGC-AGCAGCAGGATCGACAGC
65 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGA-CAGCAGGATCGACAGC
* * * * * **
24443315 ACACAGGGGGGA-TCAGGCTGATCTCCGACTTGCGCATTCTACCTCTT-CGATCGACTGAATGCC
129 ACGCAGGGGGGACT-GGGCTGATCCCCGACTTGCGCATTCTGCCT-TTCCGACCGACTGAGCGCC
* * * *
24443378 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGTAGTACATTCCA-ATCTAAGCCCCAATCGG
192 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGA
* *
24443442 ACCGAGGGTTGTGGCAGCAGGACCGGTAGCGAGATCGATAGCACGTAGAGGGGGACTGGGTTGAT
257 ACCGAGGGTTATGGCAGCAGGA----T--C--GA-C---AGCACGCAGAGGGGGACTGGG-TGAT
* * * * *
24443507 CCGGGCTTGCGCATTATGCCTTTCCAGTCGGCCTCTCTAGCCGG
309 CCCGACTTGCGCATTATGCCTCTCCAGCCGGCCTCTCGAGCCGG
* * * * **
24443551 TGAGCGCCCACACGTTTGTTTCATTCGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGTCC-TACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * * * ** *
24443616 TACGGAGTTCATTCCTAGTCTAAGATCAGA-CCGAATCGAGGGTTACGGCCCCAGGATCGACAAC
65 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAG-ATCGAGGGTTGCGACAGCAGGATCGACAGC
* * *
24443680 ACGTAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTTTCCGACCTG-CTGAGCGCCC
129 ACGCAGGGGGGACTGGGCTGATCCCCGACTTGCGCATTCTGCCTTTCCGACC-GACTGAGCGCCC
* * *
24443744 ACACACTCG-TTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAG-CTGA
193 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTC-GA
* **
24443807 ACCGAGGGTTATGGCAGCAGGATCGACAGCACGCAAAGGGGGACTGGGCTGATCTCCGACTTGTA
257 ACCGAGGGTTATGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGG-TGATC-CCGACTTGCG
* *
24443872 CATTATGCCTCTCTAGCCGGCCTCTCCGA-TCGG
320 CATTATGCCTCTCCAGCCGGCCTCT-CGAGCCGG
**
24443905 TTGAGCGTCCGTACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAAGC
1 -TGAGCGTCC-TACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * * **
24443970 ATACGGAGTTCATTCCGAGTCTAAGATCGGATTAGA-CTGAGGGTTGCGATAGCAAGATCGGTAG
64 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATC-GAGGGTTGCGACAGCAGGATCGACAG
* * * * *
24444034 CACGCAGGGGGAACTGGGCTGATCGCCGACTTACGCATTCTGCCTCTCC-AGCCGACTGAGCACC
128 CACGCAGGGGGGACTGGGCTGATCCCCGACTTGCGCATTCTGCCTTTCCGA-CCGACTGAGCGCC
* * * * *
24444098 CGTACGCCCGTTTCATGGGTTGGCTTAAGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGTCA
192 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAGTCG
* *
24444162 AACCGAGGGTTATGGCAGCAGGACCGACAGCACACAGAGGGGGA-TCGGGTCGATCCCTGACTTG
256 AACCGAGGGTTATGGCAGCAGGATCGACAGCACGCAGAGGGGGACT-GGGT-GATCCC-GACTTG
* *
24444226 CGCATTATGCCTCTTCAGTCGGC
318 CGCATTATGCCTCTCCAGCCGGC
24444249 TCAACGTTCG
Statistics
Matches: 584, Mismatches: 92, Indels: 52
0.80 0.13 0.07
Matches are distributed among these distances:
353 24 0.04
354 34 0.06
355 166 0.28
356 119 0.20
357 4 0.01
359 1 0.00
361 1 0.00
363 2 0.00
364 79 0.14
365 153 0.26
366 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (352 bp):
TGAGCGTCCTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGACAGCAGGATCGACAGCAC
GCAGGGGGGACTGGGCTGATCCCCGACTTGCGCATTCTGCCTTTCCGACCGACTGAGCGCCCGCA
CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGAACCG
AGGGTTATGGCAGCAGGATCGACAGCACGCAGAGGGGGACTGGGTGATCCCGACTTGCGCATTAT
GCCTCTCCAGCCGGCCTCTCGAGCCGG
Found at i:24444276 original size:159 final size:160
Alignment explanation
Indices: 24444096--24444472 Score: 413
Period size: 159 Copynumber: 2.4 Consensus size: 160
24444086 CGACTGAGCA
* * * * *
24444096 CCCGTACGCCCGTTTCATGGGTTGGCTTAAGCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-T
1 CCCGTACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
* *
24444160 CAAACCGAGGGTTATGGCAGCAGGACCGACAGCACACAGAGGGGGAT-CGGGTCGATCCCTGACT
66 CAAACCGAGGGTTACGGCAGCAAGACCGACAGCACACAG-GGGGGATCCGGGTCGATCCCTGACT
* *
24444224 TGCGCATTATGCCTCTTCAGTC-GGCTCAACG
130 TGCGCATTATACCTC-TCAGACTGGCTCAACG
** * * * * * *
24444255 TTCGTACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-ATCTGA
1 CCCGTACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
* * * * * ** * *
24444318 CCGAACTGAGGGTTGCGGTAGCAAGATCGACAGCACGTAGGGGGGGTCCGGGTCGATCCCTGGCT
65 CCAAACCGAGGGTTACGGCAGCAAGACCGACAGCACACAGGGGGGATCCGGGTCGATCCCTGACT
* * * *
24444383 TGCGCATTCTACCTCTCCGACTGGCTGAGCG
130 TGCGCATTATACCTCTCAGACTGGCTCAACG
*
24444414 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CCCGTACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCA
24444473 TACGGAGCTC
Statistics
Matches: 176, Mismatches: 36, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
158 15 0.09
159 157 0.89
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (160 bp):
CCCGTACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
CAAACCGAGGGTTACGGCAGCAAGACCGACAGCACACAGGGGGGATCCGGGTCGATCCCTGACTT
GCGCATTATACCTCTCAGACTGGCTCAACG
Found at i:24446335 original size:26 final size:26
Alignment explanation
Indices: 24446299--24446351 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24446289 GTTGACTTAG
*
24446299 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
24446325 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24446351 G
1 G
24446352 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24447053 original size:25 final size:26
Alignment explanation
Indices: 24447024--24447078 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 26
24447014 TGGGTTGACT
** *
24447024 TAAGCATACGGAGTTCA-TCCCAGTC
1 TAAGCATACAAAGTTCATTCCCAATC
24447049 TAAGCATACAAAGTTCATTCCCAATC
1 TAAGCATACAAAGTTCATTCCCAATC
24447075 TAAG
1 TAAG
24447079 ATTACATCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATTCCCAATC
Found at i:24447424 original size:159 final size:159
Alignment explanation
Indices: 24447260--24447553 Score: 338
Period size: 159 Copynumber: 1.8 Consensus size: 159
24447250 AGGGTTGTGG
* * * * * *
24447260 TAGCAGGACCGGCAGCACGTAGAGGG-GGACCGGGTCGATCCCTGACTTGCGCATTATGCCTCTT
1 TAGCAGGACCGACAGCACGCAG-GGGAGGACCGGGTCGATCCCCGACTTGCGCATCATACCTCTC
* * * * * *
24447324 TGGCCGGCTCAGCACCCACATGCTCGTTTAATGGGTTGACTTATGCATATGGAGTTCATTCCCAG
65 TGGCCGGCTCAGCACCCACACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCATCCCCAA
24447389 TCTAAGATCGGACCGGATAAAAGGTTACGA
130 TCTAAGATCGGACCGGATAAAAGGTTACGA
** * * * * *
24447419 TAGCAGGATTGATAGCACGCAGGGGAGGATCGGGTCGATCCCCGGCTTGCGTATCCTACCTCTCT
1 TAGCAGGACCGACAGCACGCAGGGGAGGACCGGGTCGATCCCCGACTTGCGCATCATACCTCTCT
* * * * * **
24447484 GGTCGGCTGAGCCCCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAAT
66 GGCCGGCTCAGCACCCACACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCATCCCCAAT
24447549 CTAAG
131 CTAAG
24447554 CATATGAAGT
Statistics
Matches: 108, Mismatches: 26, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
158 3 0.03
159 105 0.97
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
TAGCAGGACCGACAGCACGCAGGGGAGGACCGGGTCGATCCCCGACTTGCGCATCATACCTCTCT
GGCCGGCTCAGCACCCACACGCTCATTTAATGGGTTGACTTAGGCATACGGAGTTCATCCCCAAT
CTAAGATCGGACCGGATAAAAGGTTACGA
Found at i:24447698 original size:184 final size:185
Alignment explanation
Indices: 24447368--24447721 Score: 440
Period size: 184 Copynumber: 1.9 Consensus size: 185
24447358 GTTGACTTAT
* * *
24447368 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATAAAAGGTTACGATAGCAGGATTGATA
1 GCATATGAAGTTCATTCCCACTCTAAGATCGGACCGGATAAAAGGTTACGATAGCAGGATCGATA
* ** * * * ** * * * *
24447433 GCACGCAGGGGAGGATCGGGTCGATCCCCGGCTTGCGTATCCTACCTCTCTGGTCGGCTGAGCCC
66 GCACGAAAAGGAGGACCAGGCCGATCCCCGGCTTGCACATCCTACCTCACCGGCCGACTGAGCCC
*
24447498 CCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
131 CCGCACATTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
* * * * * * *
24447553 GCATATGAAGTTCTTTCCCACTCTAAGATCGGACCGGATCAAGGGTTGCGGTAGTAGGATCGGTA
1 GCATATGAAGTTCATTCCCACTCTAAGATCGGACCGGATAAAAGGTTACGATAGCAGGATCGATA
* * * **
24447618 GCACGAAAAGG-GGACCAGGCCGATCCCCGGCTTGCACATTCTGCCTCACCGGCCGATTGAGTGC
66 GCACGAAAAGGAGGACCAGGCCGATCCCCGGCTTGCACATCCTACCTCACCGGCCGACTGAGCCC
*
24447682 CCGCACATTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
131 CCGCACATTCATTTCGTGGGTTGACTTAGGCATACGGAGT
24447722 ACATTCCATG
Statistics
Matches: 140, Mismatches: 29, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
184 77 0.55
185 63 0.45
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (185 bp):
GCATATGAAGTTCATTCCCACTCTAAGATCGGACCGGATAAAAGGTTACGATAGCAGGATCGATA
GCACGAAAAGGAGGACCAGGCCGATCCCCGGCTTGCACATCCTACCTCACCGGCCGACTGAGCCC
CCGCACATTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
Found at i:24448211 original size:26 final size:26
Alignment explanation
Indices: 24448182--24448234 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24448172 GTTGACTTAG
24448182 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
24448208 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24448234 G
1 G
24448235 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24448693 original size:158 final size:156
Alignment explanation
Indices: 24448208--24448708 Score: 517
Period size: 159 Copynumber: 3.2 Consensus size: 156
24448198 CCCAATCTAA
** **
24448208 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGATCA-AGGGTTACGGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGAT-AGAGGGTTGTGGCAGCAGGATCGA
* * * *
24448271 CAGCACGTAAAGGGGACCGACCGATCCCTGGCTTGCGCATTCTACCTCTCTGACCGGTTGAGCAC
64 CAGCACGTAAGGGGGACCGGCCGAT-CCTGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCAC
* *
24448336 CCGCACACCCATTTCGTGGGTTGGCTTTG
128 CCGCACACTCATTTCGTGGGTTGGCTTAG
* * ** ** * *
24448365 GCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGATAGAGGGTTGTGGCAGCAGGATCGAC
* * * ** * *
24448429 AGCACGTAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTC-CTTGATTGACTCAGC
65 AGCACGTA-AGGGGGAC-CGGCCGAT-CCTGGCTTGCGCATTCTGCCTCTC-TGACCGGCTGAGC
* * * *
24448493 ACCCGTACGCTCATTTCGTGGGTTGACTTAT
126 ACCCGCACACTCATTTCGTGGGTTGGCTTAG
* * *
24448524 ACATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGATAGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGATAGAGGGTTGTGGCAGCAGGATCGAC
* * * *
24448588 AGCACGCAAGGGGGACCAGGTCGATCCTGGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
65 AGCACGTAAGGGGGACC-GGCCGATCCT-GGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCAC
* *
24448653 CCGCACACTCGTTTCATGGGTTGGCTTAG
128 CCGCACACTCATTTCGTGGGTTGGCTTAG
*
24448682 GCATTCGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
24448709 CATACATAGG
Statistics
Matches: 272, Mismatches: 60, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
156 3 0.01
157 58 0.21
158 96 0.35
159 112 0.41
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGATAGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAAGGGGGACCGGCCGATCCTGGCTTGCGCATTCTGCCTCTCTGACCGGCTGAGCACCCG
CACACTCATTTCGTGGGTTGGCTTAG
Found at i:24449444 original size:26 final size:26
Alignment explanation
Indices: 24449415--24449467 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24449405 GTTAACTTAG
*
24449415 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
24449441 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24449467 G
1 G
24449468 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24449809 original size:26 final size:26
Alignment explanation
Indices: 24449780--24449835 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
24449770 TTGGTTGACT
*
24449780 TAAGCATACAGAGTTTATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* *
24449806 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
24449832 TAAG
1 TAAG
24449836 ATTAGATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:24450086 original size:368 final size:365
Alignment explanation
Indices: 24449378--24450396 Score: 1165
Period size: 368 Copynumber: 2.8 Consensus size: 365
24449368 CTCTGGTCAG
* * * * * *
24449378 CTGAGCTCCCGCATGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
* *
24449443 ATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGC-GATAGCAGGATCGGTAG
66 ATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGAT-GAGGGTTGCAG-TAGCAGGATCGGTAG
* * ** *
24449507 CACGCAGAGGGGA-CTGGGTCGATCCTTGGCTTACGCATTCTGCCTCTCCAGCCGACTAAGTGCC
129 CACGCAGAGGGGATC-AGGTCGATCCTCGGCTTGGGCATTCTGCCTCTCCA-CCGGCTAAG-GCC
* * * * * *
24449571 CTCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCAGGTCTAAGCCCTAGCCAA
191 CGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTAAGCCCCAGCCGA
* * * *
24449636 ATCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGACAGCACGTAGAGGGGGACCAGGTTGAT
256 ATCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACATAGAGAGGGACCAGGCTGAT
* * * *
24449701 CCTCGACTTACGCATTATGCCTCTCTGA-TCGACCT-TTCCAGCTGG
321 CCCCGACTTACGCATTATGCCTCTCCGACT-GACCTCTT-CAGCCGA
* * * *
24449746 CTGAGCGCTC-GTACGCTCGTTTCGTTGGTTGACTTAAGCATACAGAGTTTATCCCCAGTCTAAG
1 CTGAGCGC-CGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
*
24449810 CATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATAGAGGGTTACAGTAGCAGGATCGGTAG
65 CATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGAT-GAGGGTTGCAGTAGCAGGATCGGTAG
* *
24449875 CATGCAGGGGGGATC-GGATCGATCCTCGGCTTGGGCATTCTGCCTCTCCTACCGGCTAAGCGCC
129 CACGCAGAGGGGATCAGG-TCGATCCTCGGCTTGGGCATTCTGCCTCTCC-ACCGGCTAAG-GCC
* * * *
24449939 CGCACGCTCATTTCGTTGGTTGGCTTAGGCATACAAAGTACATTCCATGTCTAAGCCCCAGCCGA
191 CGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTAAGCCCCAGCCGA
* * * *
24450004 ATTGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGATAGCACATAGAGAGGGATCGGGCTGAT
256 ATCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACATAGAGAGGGACCAGGCTGAT
* ** * *
24450069 CCCCGGCTTGTGCATTATGCCTCTCCGACTGGCCTCTTCGGCCGA
321 CCCCGACTTACGCATTATGCCTCTCCGACTGACCTCTTCAGCCGA
* * * *
24450114 TTGAGTGCCGGCACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
* * * * * * **
24450179 ATACGGAGTTCATTCACAATCTTAGATCAGACCGGCCTGAGGGTTGCAGTAGCAGGATCGACAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATTAGATCGG-ATGAGGGTTGCAGTAGCAGGATCGGTAGC
* * * * * ** *
24450244 ACACAGCGGGGATCAGGCCGAT-CTCTGACTTGGGCATTTTGCCTCTCCGGTCGGTTGAAGGCCC
130 ACGCAGAGGGGATCAGGTCGATCCTC-GGCTTGGGCATTCTGCCTCTCC-ACCGGCT-AAGGCCC
**
24450308 GCATGCTCGTTTCGTGGGTTGGCTTAGGCATA-AGGAGCT-CATTCCATGTCTAAGCCCCAGATG
192 GCATGCTCGTTTCGTGGGTTGGCTTAGGCATACA-GAG-TACATTCCATGTCTAAGCCCCAGCCG
* * *
24450371 GATCGAGGGTTGTGACAGCATGACCG
255 AATCGAGGGTTGTGGCAGCAGGACCG
24450397 ACAGTACGCA
Statistics
Matches: 553, Mismatches: 84, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
367 7 0.01
368 532 0.96
369 14 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (365 bp):
CTGAGCGCCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATGAGGGTTGCAGTAGCAGGATCGGTAGCA
CGCAGAGGGGATCAGGTCGATCCTCGGCTTGGGCATTCTGCCTCTCCACCGGCTAAGGCCCGCAT
GCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTAAGCCCCAGCCGAATCGA
GGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACATAGAGAGGGACCAGGCTGATCCCCG
ACTTACGCATTATGCCTCTCCGACTGACCTCTTCAGCCGA
Found at i:24450702 original size:26 final size:26
Alignment explanation
Indices: 24450652--24450704 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24450642 GTTGGCTTAG
* *
24450652 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24450678 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24450704 G
1 G
24450705 ATTTTGAGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24451769 original size:25 final size:26
Alignment explanation
Indices: 24451740--24451791 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
24451730 GTTGACTTAG
*
24451740 GCATACGGAGTTCA-TCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
24451765 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24451791 G
1 G
24451792 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24451976 original size:26 final size:26
Alignment explanation
Indices: 24451924--24451976 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24451914 GTTGGATTAG
* * *
24451924 GCATATGGAGTTCATTCCACGTTTAA
1 GCATATGGAGCTCATTCCACATCTAA
24451950 GCATATGGAGCTCATTCC-CAATCTAA
1 GCATATGGAGCTCATTCCAC-ATCTAA
24451976 G
1 G
24451977 ATTTTTAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGCTCATTCCACATCTAA
Found at i:24452068 original size:11 final size:11
Alignment explanation
Indices: 24452054--24452102 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
24452044 ACCATCGTCG
24452054 GAGCATCGCTA
1 GAGCATCGCTA
24452065 GAGCATCGGC-A
1 GAGCATC-GCTA
* *
24452076 GAGCATCACCA
1 GAGCATCGCTA
24452087 GAGCATCGCTA
1 GAGCATCGCTA
24452098 GAGCA
1 GAGCA
24452103 CGTGCACACC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
10 1 0.03
11 30 0.91
12 2 0.06
ACGTcount: A:0.31, C:0.29, G:0.29, T:0.12
Consensus pattern (11 bp):
GAGCATCGCTA
Found at i:24453099 original size:13 final size:13
Alignment explanation
Indices: 24453081--24453116 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
24453071 TACGCATTAT
24453081 GCCTCTCCGACCG
1 GCCTCTCCGACCG
24453094 GCCTCTCCGACCG
1 GCCTCTCCGACCG
*
24453107 ACCTCTCCGA
1 GCCTCTCCGA
24453117 TCGACTGAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.11, C:0.53, G:0.19, T:0.17
Consensus pattern (13 bp):
GCCTCTCCGACCG
Found at i:24453121 original size:13 final size:13
Alignment explanation
Indices: 24453082--24453121 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
24453072 ACGCATTATG
*
24453082 CCTCTCCGACCGG
1 CCTCTCCGACCGA
24453095 CCTCTCCGACCGA
1 CCTCTCCGACCGA
*
24453108 CCTCTCCGATCGA
1 CCTCTCCGACCGA
24453121 C
1 C
24453122 TGAGTGCCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.12, C:0.53, G:0.17, T:0.17
Consensus pattern (13 bp):
CCTCTCCGACCGA
Found at i:24453189 original size:26 final size:26
Alignment explanation
Indices: 24453158--24453210 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24453148 GTTGACTTAG
*
24453158 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24453184 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24453210 G
1 G
24453211 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24454419 original size:26 final size:26
Alignment explanation
Indices: 24454381--24454433 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24454371 GTTGACTTAG
*
24454381 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
24454407 GCATACGGGGTTCTTTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24454433 G
1 G
24454434 ATCAAATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24454798 original size:26 final size:26
Alignment explanation
Indices: 24454748--24454800 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24454738 GTTGACTTAG
*
24454748 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
24454774 GCATACGGAGTTGATTCCTAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24454800 G
1 G
24454801 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24455639 original size:26 final size:26
Alignment explanation
Indices: 24455603--24455655 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24455593 GTTGACTTAG
24455603 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24455629 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24455655 G
1 G
24455656 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24456000 original size:26 final size:26
Alignment explanation
Indices: 24455971--24456023 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24455961 GTTGACTTAG
*
24455971 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
24455997 GCATATGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24456023 G
1 G
24456024 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24456375 original size:26 final size:26
Alignment explanation
Indices: 24456339--24456391 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24456329 GTTGACTTAG
*
24456339 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
24456365 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24456391 G
1 G
24456392 ATGAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24456481 original size:368 final size:360
Alignment explanation
Indices: 24455262--24456570 Score: 1253
Period size: 368 Copynumber: 3.6 Consensus size: 360
24455252 GTTGACTTAT
* * * * * *
24455262 GCATAAGGAGTTCATTCCCAGTCTACGATCAGACCGGA-CTGAAGGTTG-TAGCAGCAGGATTGA
1 GCATAA-GAGTTCATTCCCAGTCTAAGATGAGACCGGATC-GAGGGTTGCGA-TAGCAGGATCGA
* * * * * * * * * * **
24455325 CAGCATGCAGGGGGGATCGGGTCGATCCTCGACGTACGTATTCTGCCTCTCCAATTGGCTGAGTG
63 CAGAACGTAGGGGGGATCGAGCCGATCC-AGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTG
* * * * * *
24455390 ACCGCACACTTGTTTCGTGGGTTGGCTTAGGCATATGGAGTACATTCCACATCTAAGCCCTAG-C
127 -CCGCA-TCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTC
* * * * * *
24455454 TGGATCGAGGGTTGTGGCAGTAGGACTGGCAGAT-GGATTGGCAGCACGCAGAGAGGGACCGGGT
190 -AGATCGAGGGTTGTGGTAGCAGCACTGGCAG-TGGGATCGGCAGCACGCAGAGAGGGACCGGGC
* * * * * *
24455518 TGATCCTCGACTTG-AGCATTATGCCTCTCCGGATCGGCCTTTCAGTCGATGAGTGCCCACAT-G
253 TGATCCCCGACTTGCA-CATTATGCCTCTCCGGA--GGCCTCTCACTGGCTGAG-ACCCAC-TCG
*
24455581 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
313 CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* *
24455629 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGATCGACA
1 GCATA-AGAGTTCATTCCCAGTCTAAGATGAGACCGGATCGAGGGTTGCGATAGCAGGATCGACA
* * * * * * *
24455694 GTATGCAGGGGGGATCGGGTCGATCCCCAG-CTTGCGCATTCTGCCTCTTCGACCGGCTGGGTGC
65 GAACGTAGGGGGGATCGAGCCGAT--CCAGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTG-
* * * * * *
24455758 CCGTACTTTCGTTTCGTGGATTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCA-ACC
127 CCGCA-TCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCA
* * * * *
24455822 GAATGGAGGGTTGT-GTCTGCAGCACTGGCAGCGGGATCGACAACACGCAGAGAGGGACCGGGCT
191 G-ATCGAGGGTTGTGGT-AGCAGCACTGGCAGTGGGATCGGCAGCACGCAGAGAGGGACCGGGCT
* * * **
24455886 GATCCCCGACTTGCACATTATGCCTCTCTGGTTGGCCTCTCTAGCCGGCTGA-ACGCCTGTACGC
254 GATCCCCGACTTGCACATTATGCCTCTCCGG-AGGCCTCTC-A-CTGGCTGAGAC-CCACT-CGC
* *
24455950 TCGATTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
314 TCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * *
24455997 GCATATGAAGTTTATTCCCAGTCTAAGATCGA-ACCGGATCGAGGGTTGCGACAGCAGGATCGAT
1 GCATAAG-AGTTCATTCCCAGTCTAAGAT-GAGACCGGATCGAGGGTTGCGATAGCAGGATCGAC
* **
24456061 AGAACGTAGGGGGGATC-AGGCCGATCCCAGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTG
64 AGAACGTAGGGGGGATCGA-GCCGAT-CCAGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTG
*
24456125 TCCGCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTC
127 -CCGCAT-CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTC
* * * * * * *
24456190 AGACCGGGGGTTGTGGTAGCAGCACCGACAGTGGGATCGGCAGCATGCAAAG-GAGGAACGGGCT
190 AGATCGAGGGTTGTGGTAGCAGCACTGGCAGTGGGATCGGCAGCACGCAGAGAG-GGACCGGGCT
*
24456254 GATCCCC-AGCTTGCACATTATGACTCTCCGGCAGGCCTCTCCGACTGGCTGAGCACCCACTCGC
254 GATCCCCGA-CTTGCACATTATGCCTCTCCGG-AGGCCTCT-C-ACTGGCTGAG-ACCCACTCGC
24456318 TCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
314 TCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * *
24456365 GCATACAGAGTTCATTCCCAGTTTAAGATGAGACCAGATCGAGGGTTGCGATAGTAGGATCGACA
1 GCATA-AGAGTTCATTCCCAGTCTAAGATGAGACCGGATCGAGGGTTGCGATAGCAGGATCGACA
* * * * * ** * *
24456430 GCACGTAGGGGGGACCGAGCCGATCTCTGACTTGCTCATTCTGCCTCTCCGGCCAACTAAGCGCT
65 GAACGTAGGGGGGATCGAGCCGATC-CAGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGC-
* * * * * * *
24456495 TGCACCCCGTTTCATGGGTTGGCTTAGGTATAGGGAGCT-CATTCTATGTCTAAGCCCCAGTCAG
128 CGCATCTCGTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCCAGTCAG
24456559 ATCGAGGGTTGT
192 ATCGAGGGTTGT
24456571 TGCAGTGAGA
Statistics
Matches: 787, Mismatches: 121, Indels: 68
0.81 0.12 0.07
Matches are distributed among these distances:
366 11 0.01
367 309 0.39
368 451 0.57
369 14 0.02
370 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (360 bp):
GCATAAGAGTTCATTCCCAGTCTAAGATGAGACCGGATCGAGGGTTGCGATAGCAGGATCGACAG
AACGTAGGGGGGATCGAGCCGATCCAGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCGC
ATCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCAGATCG
AGGGTTGTGGTAGCAGCACTGGCAGTGGGATCGGCAGCACGCAGAGAGGGACCGGGCTGATCCCC
GACTTGCACATTATGCCTCTCCGGAGGCCTCTCACTGGCTGAGACCCACTCGCTCGTTTTGTGGG
TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:24457591 original size:26 final size:26
Alignment explanation
Indices: 24457562--24457614 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24457552 GATGAATTAG
*
24457562 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
24457588 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24457614 G
1 G
24457615 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24457947 original size:26 final size:26
Alignment explanation
Indices: 24457917--24457969 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24457907 GTTGACATAG
*
24457917 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
* **
24457943 GCATACGAAATTTATTTCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
24457969 G
1 G
24457970 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:24458324 original size:159 final size:156
Alignment explanation
Indices: 24457942--24458444 Score: 476
Period size: 159 Copynumber: 3.2 Consensus size: 156
24457932 CCCCAGTCTA
* * * * *
24457942 AGCATACGAAATTTATTTCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGA
1 AGCATACGGAATTCA-TTCCATGTCTAAGATTAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * *
24458006 TAGCACGGAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGTTGAGTG
65 CAGCACGCAGGGGGGACCGGGT-GATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * *
24458071 CCCGCATGCCCGTTTCGTGGGTTGGCTT
129 CCCGAACGCTCGTTTCGTGGGTTGGCTT
* ** ** * * *
24458099 AGCATAGGGAGCTCATTCCATGTCTAAGCCCTAG-CCAGACCGAGGGTTGTGGTAGCGGGATCGA
1 AGCATACGGAATTCATTCCATGTCTAAG-ATTAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * *
24458163 CAGCACGTAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTTTGCCTCTTCGGTTGGCTCAGC
65 CAGCACGCAG-GGGGGACCGGG-TGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* **
24458228 ACCCGAACGCTCGTTTCGTGGGTTTACTT
128 GCCCGAACGCTCGTTTCGTGGGTTGGCTT
* ** * *
24458257 ATGCATACGGAATTCATTCCCA-GTCTAAGATTGGATTGGACCGAGGGTTGTGGCAGCAAGATTG
1 A-GCATACGGAATTCATT-CCATGTCTAAGATTAGACCGGACCGAGGGTTGTGGCAGCAGGATCG
* * * * * *
24458321 ACAGTACGCAGGGGGGGA-TGGAGTTGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCAGCTGA
64 ACAGCACGCA-GGGGGGACCGG-G-TGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGA
*
24458385 GCGCCC-ACACGCTCGTTTCATGGGTTGGCTT
126 GCGCCCGA-ACGCTCGTTTCGTGGGTTGGCTT
*
24458416 AGGCATACGGAGTTCATTCCATGTCTAAG
1 A-GCATACGGAATTCATTCCATGTCTAAG
24458445 CATACGAAGC
Statistics
Matches: 275, Mismatches: 60, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
156 5 0.02
157 50 0.18
158 78 0.28
159 138 0.50
160 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
AGCATACGGAATTCATTCCATGTCTAAGATTAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
AGCACGCAGGGGGGACCGGGTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGAACGCTCGTTTCGTGGGTTGGCTT
Found at i:24459189 original size:26 final size:27
Alignment explanation
Indices: 24459151--24459204 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
24459141 GTTGACTTAG
24459151 GCATACGAAAGTTCATCCCCAGTCTAA
1 GCATACGAAAGTTCATCCCCAGTCTAA
*
24459178 GCATAC-AAAGTTCATTCCCAGTCTAA
1 GCATACGAAAGTTCATCCCCAGTCTAA
24459204 G
1 G
24459205 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (27 bp):
GCATACGAAAGTTCATCCCCAGTCTAA
Found at i:24459558 original size:26 final size:26
Alignment explanation
Indices: 24459522--24459573 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24459512 TGACTTAGGC
*
24459522 ATACGGAGTTCATCCCCAGTCTAAGA
1 ATACAGAGTTCATCCCCAGTCTAAGA
*
24459548 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATCCCCAGTCTAAGA
24459574 TCGAATCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGA
Found at i:24460080 original size:26 final size:26
Alignment explanation
Indices: 24460050--24460102 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24460040 GTTGACTTAG
24460050 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24460076 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24460102 G
1 G
24460103 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24460435 original size:26 final size:26
Alignment explanation
Indices: 24460399--24460451 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24460389 GTTGACTTAG
24460399 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24460425 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24460451 G
1 G
24460452 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24460676 original size:349 final size:344
Alignment explanation
Indices: 24460040--24460691 Score: 767
Period size: 361 Copynumber: 1.9 Consensus size: 344
24460030 CATTTCATGG
*
24460040 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* *
24460105 CAGATTGGATCAAGGGTTGCGACAGCACGCAGGGGGGACTGGGTCGATCCCCGACTTGCGCATTC
66 CAAACTGGATCAAGGGTTGCGACAGCACGCAGGGGGGACTGGGTCGATCCCCGACTTGCGCATTC
* * *
24460170 TACCTCTCCGACTGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTTGGCATATGGAGTAC
131 TACCTCTCCGACTGACTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATATGGAGTAC
* *
24460235 ATTCCATGTCTAAGCCCTAGTCGAACTGAGGGTTGTGGTAGCAGGACCGGCAGCGGGAACGGCAG
196 ATTCCATGTCTAAGCCCTAGCCGAACCGAGGGTTGTGG-AGCAGGA-CGGCAGC--G-ACGGCAG
* * * *
24460300 CACGCAGAGGGGGATCAGGCTGATCCCCAGCTTGGGCATTATGGATTGGCCTCTTCGGCCAGTTG
256 CACACAGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGGATTGGCCTCTTCGGCCAGTTG
24460365 AGCGTCCGCACGCTCATTTTGTTT
321 AGCGTCCGCACGCTCATTTTGTTT
24460389 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
*
24460454 CAAACTGGA-CTAGGGGTTACAGTAGCAGGATCGGCAGCACTG-AGGGGGGA-TCGGG-CTGATC
66 CAAACTGGATC-AAGGG-T----T-GC--GA----CAGCAC-GCAGGGGGGACT-GGGTC-GATC
* * * * * * * *
24460515 CCTGGCTTGCGCATTCTGCCTCTCCG-GTCGACTGAGCGCCCGCATGCCCGTTTTGTGGGTTGGC
115 CCCGACTTGCGCATTCTACCTCTCCGACT-GACTGAGCACCCGCACGCCCATTTCGTGGGTTGGC
* *
24460579 TTAGGCATA-GAGAGCT-CATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGT-G-GCAGTA-
179 TTAGGCATATG-GAG-TACATTCCATGTCTAAGCCCTAGCCGAACCGAGGGTTGTGGAGCAGGAC
24460639 GG-A-C-A-GGCAGCACACAGAGGGGGACC-GAGCCGATCCCCAGCTTGCGCATTATG
242 GGCAGCGACGGCAGCACACAGAGGGGGACCAG-GCCGATCCCCAGCTTGCGCATTATG
24460692 CCTCTTCGGT
Statistics
Matches: 260, Mismatches: 23, Indels: 40
0.80 0.07 0.12
Matches are distributed among these distances:
348 2 0.01
349 117 0.45
350 2 0.01
354 2 0.01
355 3 0.01
356 2 0.01
357 2 0.01
358 5 0.02
360 5 0.02
361 118 0.45
362 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (344 bp):
GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CAAACTGGATCAAGGGTTGCGACAGCACGCAGGGGGGACTGGGTCGATCCCCGACTTGCGCATTC
TACCTCTCCGACTGACTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATATGGAGTAC
ATTCCATGTCTAAGCCCTAGCCGAACCGAGGGTTGTGGAGCAGGACGGCAGCGACGGCAGCACAC
AGAGGGGGACCAGGCCGATCCCCAGCTTGCGCATTATGGATTGGCCTCTTCGGCCAGTTGAGCGT
CCGCACGCTCATTTTGTTT
Found at i:24460713 original size:159 final size:159
Alignment explanation
Indices: 24460477--24460928 Score: 486
Period size: 159 Copynumber: 2.8 Consensus size: 159
24460467 GGGTTACAGT
* ** * * * ** *
24460477 AGCAGGATCGGCAGCACTGA-GGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCG
1 AGCAGGATCGACAGCACACATGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCG
* * *
24460541 GTCGACTGAGCGCCCGCATGCCCGTTTTGTGGGTTGGCTTAGGCATAGAGAGCTCATTCCATGTC
66 GTCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTC
* *
24460606 TAAGCCCTAG-CCGGACCGAGGGTTGTGGC
131 TAAGCCC-AGACCAGACCGACGGTTGTGGC
* * *
24460635 AGTAGGA-CAGGCAGCACACA-GAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTATGCCTCTT
1 AGCAGGATC-GACAGCACACATG-GGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTT
* * * *
24460698 CGGTCGGCTCAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTATGCATATG-GAGTTCATTCCCA
64 CGGTCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATA-GAGAGTTCATT-CCA
** * *
24460762 -GTCTAAGATCAGATCAGACCTACGGTTGTGGC
127 TGTCTAAGCCCAGACCAGACCGACGGTTGTGGC
* * * * *
24460794 AGCAGGATCGACAGTACGCATGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTTCG
1 AGCAGGATCGACAGCACACATGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCG
* * ***
24460859 ATCGACTGAGTGCCCGCACATTCGTTTCGTGGGTTGGCTTAGGCAT-GCAGAGTTCATTCCATGT
66 GTCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAG-AGAGTTCATTCCATGT
24460923 CTAAGC
130 CTAAGC
24460929 ATACGGAGCT
Statistics
Matches: 243, Mismatches: 41, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
157 2 0.01
158 21 0.09
159 214 0.88
160 6 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (159 bp):
AGCAGGATCGACAGCACACATGGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCG
GTCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTC
TAAGCCCAGACCAGACCGACGGTTGTGGC
Found at i:24462247 original size:368 final size:366
Alignment explanation
Indices: 24461573--24462584 Score: 1057
Period size: 368 Copynumber: 2.7 Consensus size: 366
24461563 CTCTAGTCGG
* * *
24461573 CTGAGCGCCCGCACACTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCAACCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * ** *
24461638 ATATGAAA-TTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGTAGGATCGACAG
66 ATA-CAAAGTTCATTCCCAGTCTAAGAT-AGACCGGATCGAAGGTTGCGACAGTAGGATCGGCAG
* * * * * *
24461702 CATGCAGGTGGGACCGGGTTGATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCGCCA
129 CACGCAGGGGGGACCGGGTCGATCCCTGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGCGCCC
* **
24461767 GCACG-TCCATTTTTTGAGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGTCGG
194 GCACGCT-CGTTTCATGAGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGTCGG
* * * * * * *
24461831 ACTGGGGGTTGTGGCAGCAGGACTGGCAGTGGGATCGGTAGGACGCAGAGCGGGACCAGGTTGAT
258 AC-GAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGGCAGCACGCAGAGCGGGACCAGGCTGAT
* * * * * *
24461896 CCTCGGCTTACGCATTATGCCTCTCCGGCCTGCCTCTCTGGCCTG-
322 CCTCAGCTTACGCATTATACCTCTCCGACCGGCCTCTCCGACC-GA
* * * * * * *
24461941 TTGAGTGCTCGTACGGTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTTTAAAC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
** * *
24462006 ATACAAAGTTTGTTCCCAGTCTAATATATGACCGGATCGAAGGTTGCGACAGTAGAATCGGCAGC
66 ATACAAAGTTCATTCCCAGTCTAAGATA-GACCGGATCGAAGGTTGCGACAGTAGGATCGGCAGC
* * *
24462071 ACGTAGGGGGGACCGGGTCGAT-CCTCGGCTTGCGCATTCTGTCTCTCTGGCCGGCTGAGCGCCC
130 ACGCAGGGGGGACCGGGTCGATCCCT-GGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGCGCCC
* * *
24462135 GCACGCTCGTTTCATGTGTTTGCTTAGGCATATGGAGTACATTCCACGTCTAAGCCCTAGTCGGA
194 GCACGCTCGTTTCATGAGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGTCGGA
* * * * * *
24462200 TCAAGGGTTGTGGCAGCAGGACCGATAGCGGGATTGGCAGCACGCAGAGGGGGATCGGGCTGATC
259 -CGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGGCAGCACGCAGAGCGGGACCAGGCTGATC
* * * *
24462265 CTCAGCTTGCGCATTATACCTCTTCGATCGGCCTCTCCGATCGA
323 CTCAGCTTACGCATTATACCTCTCCGACCGGCCTCTCCGACCGA
* * *
24462309 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGGATACGGAGTTCATCTCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* ** ** * ** * *
24462374 ATGCGGAGTTCATTCTTAGTCTAAGATCGGATTGGA-CTG-AGGATTGCGACAGCAGGATCAGCA
66 ATACAAAGTTCATTCCCAGTCTAAGAT-AGACCGGATC-GAAGG-TTGCGACAGTAGGATCGGCA
* * ** ** * * * *
24462437 GCACGCAAGGGGGACTGGGTCGATCCCTAACTTGTTCATTCTGCCTTTCTGGGCGGTTGAGTGCC
128 GCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGCGCC
* * * * * * *
24462502 CACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCTAGCCG
193 CGCACGCTCGTTTCATGAGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCTAGTCG
24462566 GACCGAGGGTTGTGGCAGC
257 GA-CGAGGGTTGTGGCAGC
24462585 GAGATTGGTA
Statistics
Matches: 528, Mismatches: 105, Indels: 22
0.81 0.16 0.03
Matches are distributed among these distances:
367 12 0.02
368 510 0.97
369 6 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (366 bp):
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACAAAGTTCATTCCCAGTCTAAGATAGACCGGATCGAAGGTTGCGACAGTAGGATCGGCAGCA
CGCAGGGGGGACCGGGTCGATCCCTGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCATGAGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGTCGGACG
AGGGTTGTGGCAGCAGGACCGACAGCGGGATCGGCAGCACGCAGAGCGGGACCAGGCTGATCCTC
AGCTTACGCATTATACCTCTCCGACCGGCCTCTCCGACCGA
Found at i:24462903 original size:26 final size:26
Alignment explanation
Indices: 24462873--24462924 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
24462863 GTTGACTTAG
* *
24462873 GCATACTAAGTTCGTCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
24462899 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24462925 TATCGGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24463084 original size:527 final size:525
Alignment explanation
Indices: 24462068--24463110 Score: 1206
Period size: 527 Copynumber: 2.0 Consensus size: 525
24462058 TAGAATCGGC
* * *
24462068 AGCACGTAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGTCTCTCTGGCCGGCTGAGCGC
1 AGCACGTAGGGGGGACCGGGCCAATCCTCGGCTTGCGCATTCTGTATCTCTGGCCGGCTGAGCGC
* *
24462133 CCGCACGCTCGTTTCATGTGTTTGCTTAGGCATATGGAGTACATTCCACGTCTAAGCCCTAGTCG
66 CCGCACGCTCGTTT-ATGTGGTTGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGTCG
* * * * *
24462198 GATCAAGGGTTGTGGCAGCAGGACCGATAGCGGGATTGGCAGCACGCAGAGGGGGATCGGGCTGA
130 GATCAAGGGTTGTGGCAGCAGGACCGACAGCAGGATCGGCAGCACACAGAGGGGGACCGGGCTGA
* * * * ** * * *
24462263 TCCTCAGCTTGCGCATTATACCTCTTCGATCGGCCTCTCCGATCGACTGAGCGCCCGCACGCTCG
195 TCCCCAGCTTGCACATTATACCTCTCCGACCAACCTCTCCGACCGACTGAGCACCCACACGCTCG
* * * * * * **
24462328 TTTCGTGGGTTGACTTAGGGATACGGAGTTCATCTCCAGTCTAAGCATGCGGAGTTCATTCTTAG
260 TTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAG
** *
24462393 TCTAAGATCGGATTGGACTGAGGATTGCGACAGCAGGATCAGCAGCACGCAAGGGGGACTGGGTC
325 TCTAAGATCGGACCGGACTGAGGATTCCGACAGCAGGATCAGCAGCACGCAAGGGGGACTGGGTC
* * * * * * *
24462458 GATCCCTAACTTGTTCATTCTGCCTTTCTGGGCGGTTGAGTGCCCACACGCCCGTTTCGTGGGTT
390 GATCCCTAACTTGTGCATTCTACCTCTCCGAGCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTT
* * **
24462523 GGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCGAG
455 CGCTTAGGCATACGGAGCTCATTCCACATCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCGAG
24462588 ATTGGT
520 ATTGGT
* * * *
24462594 AGCATGTAGAGGGGGATCGGGCCAATCCTCGGCTTGGGCATT-TCGTATCTCTGGCCGGCTGAGT
1 AGCACGTAG-GGGGGACCGGGCCAATCCTCGGCTTGCGCATTCT-GTATCTCTGGCCGGCTGAGC
24462658 GCCCGCACGCTCGTTT-TGTGGGTTGACTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCT-
64 GCCCGCACGCTCGTTTATGT-GGTTG-CTTAGGCATACGGAGTACATTCCACGTCTAAG-CCCTA
* * * *
24462721 GTCGGA-CTAAGGGTTGTGGTAGCAGGACCTACAGTAGGATCGGCAGCACATAGAGGGGGACCGG
126 GTCGGATC-AAGGGTTGTGGCAGCAGGACCGACAGCAGGATCGGCAGCACACAGAGGGGGACCGG
* * * * * *
24462785 GCTGATCCCC-GATTTGCACATTATGCCTCTCCGACCAACCTCTCTGGCCCG-CTGAGCACTCAT
190 GCTGATCCCCAG-CTTGCACATTATACCTCTCCGACCAACCTCTC-CGACCGACTGAGCACCCAC
* * *
24462848 ACGGTCGTTTCATGGGTTGACTTAGGCATACTAAGTTCGTCCCCAGTCTAAGCATACGAAGTTCA
253 ACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCA
* * * ** * * *
24462913 TTCCCAGTCTAATATCGGACCGGA-TCGAGGGTTCCGAGAGCAGGATTGGTAGCATGCAGGGGGG
318 TTCCCAGTCTAAGATCGGACCGGACT-GAGGATTCCGACAGCAGGATCAGCAGCACGCAAGGGGG
** * * ** *
24462977 ACTGGG-CTGAT-CCTCGGCTTGTGCATTCTACCTCTCCGATCGGCTGAGCGTCCGTACGCTCGT
382 ACTGGGTC-GATCCCT-AACTTGTGCATTCTACCTCTCCGAGCGGCTGAGCGCCCACACGCCCGT
* * * *
24463040 TTTGTGGGTTCGTTTAGGCATACGGAG-TACATTCCACATCTAAGCCCTAGCTGGATCGAGGGTT
445 TTCGTGGGTTCGCTTAGGCATACGGAGCT-CATTCCACATCTAAGCCCTAGCCGGACCGAGGGTT
24463104 GTGGCAG
509 GTGGCAG
24463111 TAGCACAGAC
Statistics
Matches: 428, Mismatches: 77, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
525 3 0.01
526 21 0.05
527 397 0.93
528 7 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.25
Consensus pattern (525 bp):
AGCACGTAGGGGGGACCGGGCCAATCCTCGGCTTGCGCATTCTGTATCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTATGTGGTTGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGTCGG
ATCAAGGGTTGTGGCAGCAGGACCGACAGCAGGATCGGCAGCACACAGAGGGGGACCGGGCTGAT
CCCCAGCTTGCACATTATACCTCTCCGACCAACCTCTCCGACCGACTGAGCACCCACACGCTCGT
TTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
CTAAGATCGGACCGGACTGAGGATTCCGACAGCAGGATCAGCAGCACGCAAGGGGGACTGGGTCG
ATCCCTAACTTGTGCATTCTACCTCTCCGAGCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTTC
GCTTAGGCATACGGAGCTCATTCCACATCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCGAGA
TTGGT
Found at i:24463270 original size:26 final size:26
Alignment explanation
Indices: 24463241--24463319 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
24463231 GTTGACTTAG
*
24463241 GCATACAGAGTTCATCTCC-AGTCTAA
1 GCATACGGAGTTCAT-TCCTAGTCTAA
*
24463267 GCATACGGACTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
24463293 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
24463319 G
1 G
24463320 ATCGGATCGG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 3 0.06
26 45 0.94
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:24463481 original size:26 final size:26
Alignment explanation
Indices: 24463452--24463504 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24463442 GTTGACTTAG
*
24463452 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24463478 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24463504 G
1 G
24463505 ATTGATCCGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24463770 original size:158 final size:160
Alignment explanation
Indices: 24463530--24463979 Score: 506
Period size: 158 Copynumber: 2.8 Consensus size: 160
24463520 GAGTTGCAGA
* *
24463530 AGTGGGATCGATAGCACGTAG-GGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTG
1 AGTGGGATCGATAGCACGCAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* * * *
24463594 GTCGGCTGAGCGCCCGCACGCTCGTTTTGTAGGTTGGCTTAGGCATAGGGAGCTCATTCCAT-GT
66 GTCGGCTCAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATAGT
* * *
24463658 GTAAGCCCCAG-CCGGACCGAGGGTTGTGGT
131 CTAAG-ACCAGACCGGACCAAGGGTTGTGGT
* *
24463688 AGTGGGATCGGTAGCATGCAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATT-TGCCTCTCCG
1 AGTGGGATCGATAGCACGCAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* * * * *
24463752 ATCGGCTCAGCGCTCGCACGCTCGTTTCG-AGGGTTGACTTATGCATACGAAGTTCATTCC-TAG
66 GTCGGCTCAGCGCCCGCACGCTCGTTTCGTA-GGTTGGCTTAGGCATACGGAGTTCATTCCATAG
* * *
24463815 TCTAAGATCAGATCGGATCAAGGGTTGTGGT
130 TCTAAGACCAGACCGGACCAAGGGTTGTGGT
** * * * * * *
24463846 AGCCGGATCGACAGCACACA-AGGGGGGATC-GGTTCGATCCCTGACTTGCACATTCTGCCTCTC
1 AGTGGGATCGATAGCACGCAGA-GGGGGATCAGG-CCGATCCCCGGCTTGCGCATTCTGCCTCTC
* * * *
24463909 CGGCCGACTGC-GTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
64 CGGTCGGCT-CAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCAT
24463973 A-TCTAAG
128 AGTCTAAG
24463980 CATACGGAGC
Statistics
Matches: 244, Mismatches: 38, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
157 8 0.03
158 137 0.56
159 96 0.39
160 3 0.01
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (160 bp):
AGTGGGATCGATAGCACGCAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
GTCGGCTCAGCGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATAGT
CTAAGACCAGACCGGACCAAGGGTTGTGGT
Found at i:24465449 original size:26 final size:26
Alignment explanation
Indices: 24465419--24465471 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24465409 GTTGGCTTAG
* *
24465419 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGCTCATTCCCA-GTCTAA
24465445 GCATACGAAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
24465471 G
1 G
24465472 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:24466176 original size:26 final size:26
Alignment explanation
Indices: 24466140--24466192 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24466130 GTTCACTTAG
*
24466140 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
24466166 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24466192 G
1 G
24466193 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24466633 original size:292 final size:292
Alignment explanation
Indices: 24466090--24466639 Score: 699
Period size: 292 Copynumber: 1.9 Consensus size: 292
24466080 GCGCATCCAG
* * * * *
24466090 CCTCTCTGGTCGGCTGAGTGCCCGCACACTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCAT
1 CCTCTCCGGTCGACTGAGTGCCCACACACTCATTTCATGGGTTCACTTAGGCATACGAAGTTCAT
* * * * * *
24466155 CCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGATAG
66 CCCCAGTCTAAGCATACGGAATTCATTCCCAATCTAAGATCGAACCGGACCAAGAGTTGCGATAG
* * * * * *
24466220 CAAGATCGACAGCACGTAGGGGGGATCGGGCTGATCCTTGGCTTACGCATTCTACCTCTCCGCCC
131 CAAGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCTAGCTTACACATTCTACCTCTCCGACC
* * * *
24466285 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTTGGCATACGGAGTACATTCCATGTCTTT
196 GGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGCACATTCCATGTCTTT
24466350 GCCCGGCTTGCGTATTATGCCTCTCCGATCGA
261 GCCCGGCTTGCGTATTATGCCTCTCCGATCGA
* ** * * *
24466382 CCTCTCCGGTCGATTGAGTGCCCACATGCTCGTTTCATGGGTTGACTTAGGCATATGAAGTTCAT
1 CCTCTCCGGTCGACTGAGTGCCCACACACTCATTTCATGGGTTCACTTAGGCATACGAAGTTCAT
*
24466447 CCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCGAACCGGACCAAGAGTTGC-AGTA
66 CCCCAGTCTAAGCATACGGAATTCATTCCCAATCTAAGATCGAACCGGACCAAGAGTTGCGA-TA
* ** * * * * *
24466511 GTAAGATCGGTAGCATGCGGGGGGGACC-GGATCGATCCCTAGCTTGCACATTCTGCCTCTCCGA
130 GCAAGATCGACAGCACGCAGGGGGGACCGGGCT-GATCCCTAGCTTACACATTCTACCTCTCCGA
* * * * *
24466575 TCGGTTGGGCACCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCACATTCCATGTCT
194 CCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGCACATTCCATGTCT
24466640 AAGCCCCAGC
Statistics
Matches: 215, Mismatches: 41, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
291 4 0.02
292 211 0.98
ACGTcount: A:0.19, C:0.28, G:0.27, T:0.26
Consensus pattern (292 bp):
CCTCTCCGGTCGACTGAGTGCCCACACACTCATTTCATGGGTTCACTTAGGCATACGAAGTTCAT
CCCCAGTCTAAGCATACGGAATTCATTCCCAATCTAAGATCGAACCGGACCAAGAGTTGCGATAG
CAAGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCTAGCTTACACATTCTACCTCTCCGACC
GGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGCACATTCCATGTCTTT
GCCCGGCTTGCGTATTATGCCTCTCCGATCGA
Found at i:24466820 original size:159 final size:158
Alignment explanation
Indices: 24466656--24466947 Score: 347
Period size: 158 Copynumber: 1.8 Consensus size: 158
24466646 CAGCCGGACT
* * * * *
24466656 GAGGGTTGTGAGAGCGGGACCGATAGCACGTAGAGGGGGACC-AGGCCGATCCCTCA-CTTGTGC
1 GAGGGTTGCGACAGCAGGACCAATAGCACGCAG-GGGGGACCGA-GCCGAT-CCTCAGCTTGTGC
* * * * * *
24466719 ATTATGCCTCTTCGATCGGCTCAGCG-CTCACACGCTCGTTTCGTGGGTTGACTTATGCATACGG
63 ATCATACCTCTCCGATCAGCTCAGCGCCT-ACACGCTCGTTTCATGGGTTGACTTAGGCATACGG
24466783 AGTTCATTCTCAGTCTAAGATCGGACTAGACC
127 AGTTCATTCTCAGTCTAAGATCGGACTAGACC
* * ** *
24466815 GAGGGTTGCGACAGCAGGATCAATAGCACGCAGGGGGGATCGAGTTGATCTTCAGCTTGTGCATC
1 GAGGGTTGCGACAGCAGGACCAATAGCACGCAGGGGGGACCGAGCCGATCCTCAGCTTGTGCATC
* * * *
24466880 CTACCTCTCCGATCAGCTGAGCGCCTGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
66 ATACCTCTCCGATCAGCTCAGCGCCTACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
24466945 CAT
131 CAT
24466948 CCCCAGTGTA
Statistics
Matches: 110, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
157 4 0.04
158 76 0.69
159 30 0.27
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
GAGGGTTGCGACAGCAGGACCAATAGCACGCAGGGGGGACCGAGCCGATCCTCAGCTTGTGCATC
ATACCTCTCCGATCAGCTCAGCGCCTACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
CATTCTCAGTCTAAGATCGGACTAGACC
Found at i:24466963 original size:26 final size:26
Alignment explanation
Indices: 24466933--24466985 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24466923 GTTGACTTAG
*
24466933 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24466959 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24466985 G
1 G
24466986 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24467100 original size:184 final size:184
Alignment explanation
Indices: 24466775--24467125 Score: 422
Period size: 184 Copynumber: 1.9 Consensus size: 184
24466765 GTTGACTTAT
* *
24466775 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACTAGACCGAGGGTTGCGACAGCAGGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGACAGCAGGATCAACA
* ** * ** * *
24466840 GCACGCAGGGGGGATCGAGTTGATCTTCAGCTTGTGCATCCTACCTCTCCGATCAGCTGAGCGCC
66 GCACGCAGGGGGGACCGAGCCGATCCTCAGCTTACGCATCCTACCTCTCCGACCAGCTGAGCACC
* *
24466905 TGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTGTAA
131 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTGTAA
* * * **
24466959 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGC-AGCAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGA-CAGCAGGATCAAC
* * * *
24467023 AGCACGCAGGGGGGACC-AGGCCGATCC-CTGGCTTACGCATTCTGCCTCTCTGACC-GACTGAG
65 AGCACGCAGGGGGGACCGA-GCCGATCCTC-AGCTTACGCATCCTACCTCTCCGACCAG-CTGAG
* * *
24467085 CACCCGCACGCTCGTTTCGTGGGTTGGCTTGGGCATACGGA
127 CACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
24467126 ATGCATTCCA
Statistics
Matches: 139, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
183 4 0.03
184 135 0.97
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGACAGCAGGATCAACA
GCACGCAGGGGGGACCGAGCCGATCCTCAGCTTACGCATCCTACCTCTCCGACCAGCTGAGCACC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTGTAA
Found at i:24468568 original size:26 final size:26
Alignment explanation
Indices: 24468532--24468584 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24468522 GTTGACTTAG
24468532 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
24468558 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24468584 G
1 G
24468585 ATTGAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24468936 original size:26 final size:26
Alignment explanation
Indices: 24468900--24468952 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24468890 GTTGACTTAG
*
24468900 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24468926 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24468952 G
1 G
24468953 TTTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24469257 original size:158 final size:158
Alignment explanation
Indices: 24468978--24469354 Score: 490
Period size: 158 Copynumber: 2.4 Consensus size: 158
24468968 GGGTTACGAT
* * * *
24468978 AGCAGGATCGACAGCACGCAGGAGGGATCGGGTCGATCCCCGGCTTGCACATTCTG-CTCTCCAG
1 AGCAGGACCGGCAGCACGCAGGGGGGATCGGGTCGATTCCCGGCTTGCACATTCTGCCTCTCCAG
*
24469042 ACGGCTGAGCGCCAGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGCTCATTCCATGTCT
66 ACGACTGAGCGCCAGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGCTCATTCCATGTCT
* *
24469107 ACGCCCCAGCCCAACCGAGGGTTGTGGT
131 AAGCCCCAGCCCAACCGAGGGTTGTGGC
** * * **
24469135 AGTGGGACCGGTAGCACGCAGGGGGGATCGGGTCGATTCCCAGCTTGCACATTCTGCCTCTCTGG
1 AGCAGGACCGGCAGCACGCAGGGGGGATCGGGTCGATTCCCGGCTTGCACATTCTGCCTCTCCAG
* * * * *
24469200 CCGACTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGTATAGGGAGCTCATTCCATGTCT
66 ACGACTGAGCGCCAGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGCTCATTCCATGTCT
* ** *
24469265 AAGCCCCAGTCGGACTGAGGGTTGTGGC
131 AAGCCCCAGCCCAACCGAGGGTTGTGGC
* *
24469293 AGCAGGACCGGCAGCACGCAGAGGGGGA-CAGGGTCGA-TCCCTGGCTTGCGCATTATGCCTCT
1 AGCAGGACCGGCAGCACGCAG-GGGGGATC-GGGTCGATTCCC-GGCTTGCACATTCTGCCTCT
24469355 TCGGCCGGCT
Statistics
Matches: 188, Mismatches: 28, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
157 48 0.26
158 110 0.59
159 30 0.16
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (158 bp):
AGCAGGACCGGCAGCACGCAGGGGGGATCGGGTCGATTCCCGGCTTGCACATTCTGCCTCTCCAG
ACGACTGAGCGCCAGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGAAGCTCATTCCATGTCT
AAGCCCCAGCCCAACCGAGGGTTGTGGC
Found at i:24469422 original size:159 final size:158
Alignment explanation
Indices: 24468978--24469427 Score: 408
Period size: 158 Copynumber: 2.8 Consensus size: 158
24468968 GGGTTACGAT
* * * * * * **
24468978 AGCAGGATCGACAGCACGCAGGAGGGATCGGGTCGATCCCCGGCTTGCACATTCTG-CTCTCCAG
1 AGCAGGACCGGCAGCACGCAGGGGGGATCGGGTCGATTCCCAGCTTGCACATTATGCCTCTCTGG
* * * * * * ** * *
24469042 ACGGCTGAGCGCCAGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAG-GAAGCTCATTCCATGTC
66 CCGACTCAGCGCCCGTACGCCCGTTTCATGGGTTAACTTAGGAATAGAG-AGCTCATTCAATGTC
* * ** * *
24469106 TACGCCCCAGCCCAACCGAGGGTTGTGGT
130 TAAGCCCCAGTCGGACTGAGGGTTGTGGC
** * *
24469135 AGTGGGACCGGTAGCACGCAGGGGGGATCGGGTCGATTCCCAGCTTGCACATTCTGCCTCTCTGG
1 AGCAGGACCGGCAGCACGCAGGGGGGATCGGGTCGATTCCCAGCTTGCACATTATGCCTCTCTGG
* * ** * * *
24469200 CCGACTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGTATAGGGAGCTCATTCCATGTCT
66 CCGACTCAGCGCCCGTACGCCCGTTTCATGGGTTAACTTAGGAATAGAGAGCTCATTCAATGTCT
24469265 AAGCCCCAGTCGGACTGAGGGTTGTGGC
131 AAGCCCCAGTCGGACTGAGGGTTGTGGC
* *
24469293 AGCAGGACCGGCAGCACGCAGAGGGGGA-CAGGGTCGA-TCCCTGGCTTGCGCATTATGCCTCT-
1 AGCAGGACCGGCAGCACGCAG-GGGGGATC-GGGTCGATTCCC-AGCTTGCACATTATGCCTCTC
* * * * * * *
24469355 TCGGCCGGCTCAGTGCCC-TAACGCTCGTTTCATGGGTTAACTTATGAATATAGAGTTCATTTAA
63 T-GGCCGACTCAGCGCCCGT-ACGCCCGTTTCATGGGTTAACTTAGGAATAGAGAGCTCATTCAA
24469419 TGTCTAAGC
126 TGTCTAAGC
24469428 ATACGGAGCT
Statistics
Matches: 245, Mismatches: 41, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
157 48 0.20
158 111 0.45
159 86 0.35
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
AGCAGGACCGGCAGCACGCAGGGGGGATCGGGTCGATTCCCAGCTTGCACATTATGCCTCTCTGG
CCGACTCAGCGCCCGTACGCCCGTTTCATGGGTTAACTTAGGAATAGAGAGCTCATTCAATGTCT
AAGCCCCAGTCGGACTGAGGGTTGTGGC
Found at i:24470130 original size:26 final size:26
Alignment explanation
Indices: 24470094--24470144 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24470084 GTTGACTAGG
24470094 ATACGGAGTTCA-TCCCTAGTCTAAGC
1 ATACGGAGTTCATTCCC-AGTCTAAGC
24470120 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
24470145 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:24470488 original size:25 final size:26
Alignment explanation
Indices: 24470460--24470511 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
24470450 GTTGACTTAG
24470460 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24470485 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24470511 G
1 G
24470512 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24470847 original size:159 final size:158
Alignment explanation
Indices: 24470485--24470856 Score: 430
Period size: 159 Copynumber: 2.3 Consensus size: 158
24470475 CCCAGTCTAA
* * * * * *
24470485 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTTTGGCAGTAGGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGTGGCAGCAGGACCAACA
* * * *
24470550 GCACACAGGGGGGACCGAGTTGATCCCTGGCTTGCGCAGTCTGCCTCTCCGCTCGGCTGAGCGCC
66 GCACACAGGGGGGACAGAGGTGATCCCTGGCTTGCGCAGTATGCCTCTCCGCTCGGCTCAGCGCC
*
24470615 CGCACGCTCGTTTCATGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGACTTAG
* * ** * * *
24470643 GCATGCGGAGCTCATT-CCATGTCTAAGCCCCAGCTGGAGCGAGGGTTGTGGCAGCAGGACCAAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACTGGACCGAGGGTTGTGGCAGCAGGACCAAC
* * * *
24470707 ATCACACCGAGGGGGATCAG-GGTGAT-CCTCGGCTTGCGCATTATGCCTCTTCGGCT-GGCTCA
65 AGCACACAG-GGGGGA-CAGAGGTGATCCCT-GGCTTGCGCAGTATGCCTC-TCCGCTCGGCTCA
* *
24470769 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
126 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
24470802 GCATACGAAGTTCATTCCCAGTCTAAGATCGAA-TCGGACCGAGGGTTGTGGCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACT-GGACCGAGGGTTGTGGCAGC
24470857 CGGATTGACA
Statistics
Matches: 176, Mismatches: 31, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
157 3 0.02
158 59 0.34
159 104 0.59
160 10 0.06
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGTGGCAGCAGGACCAACA
GCACACAGGGGGGACAGAGGTGATCCCTGGCTTGCGCAGTATGCCTCTCCGCTCGGCTCAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:24471710 original size:26 final size:26
Alignment explanation
Indices: 24471681--24471731 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24471671 TTGACTTAGG
24471681 CATACGAAGTTCA-TCCCTAGTCTAAT
1 CATACGAAGTTCATTCCC-AGTCTAAT
24471707 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
24471732 GATTGGACCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAT
Found at i:24471933 original size:26 final size:26
Alignment explanation
Indices: 24471894--24471946 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24471884 GTTGACTTAG
24471894 GCATACGAAATTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
* * *
24471920 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
24471946 G
1 G
24471947 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:24473110 original size:289 final size:289
Alignment explanation
Indices: 24472580--24473139 Score: 665
Period size: 289 Copynumber: 1.9 Consensus size: 289
24472570 TTAGCACTAG
* * * ** * *
24472580 TCATTCCCAGTCTACGATCGGACCAGATCGAGGGTTGTGGCAGCAGGATCGATAGTACACAGAGG
1 TCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTGCAGCAGCAAGATCGATAGCACACAGAGG
* ** * * * ** *
24472645 GGATCGGGTCGATCCTCGGCTTGCACATTCTACCTCTCCGGTCGACTGAGCGCCTGCACGCTCGT
66 GGACCGAATCGATCCCCAGCTTGCACATTCTACCTCTCCGGTCGACTGAACGCCCACACACTCGT
** * * **
24472710 TTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGGCGGACCGAGGGTTG
131 TTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAACCGGACCGAGGGTTG
* * * * *
24472775 TAGCAATAGGACCAGCAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGCTGAT-CCCTGACTTG
196 TAGCAACAGAACCAGCAGCGGGATCGGCAGCACGCAGAGAGGGATCGAGCTGATGCCC-GACTAG
24472839 AGCATTATGCCTAGTCTAAGCATACGAAGT
260 AGCATTATGCCTAGTCTAAGCATACGAAGT
* * * *
24472869 TCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTGCAGTAGCAAGATCGGTAGCACGCAGGGG
1 TCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTGCAGCAGCAAGATCGATAGCACACAGAGG
* ** * * *
24472934 GGACCGAATTGATCCCCAGCTTGCGTATTTTACCTCTTCGGTCGACTGAACGCCCACACATTCGT
66 GGACCGAATCGATCCCCAGCTTGCACATTCTACCTCTCCGGTCGACTGAACGCCCACACACTCGT
* *
24472999 TTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAACCGGATCGAGGGTTG
131 TTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAACCGGACCGAGGGTTG
* * * * * * *
24473064 TGGTAGCAGAACC-GACAGTGGGATCGGCAGCATGTAGAGAGGGATCGAGCTGATGCCCGGCTAG
196 TAGCAACAGAACCAG-CAGCGGGATCGGCAGCACGCAGAGAGGGATCGAGCTGATGCCCGACTAG
*
24473128 CGCATTATGCCT
260 AGCATTATGCCT
24473140 CTTCGATCGA
Statistics
Matches: 222, Mismatches: 47, Indels: 4
0.81 0.17 0.01
Matches are distributed among these distances:
288 1 0.00
289 218 0.98
290 3 0.01
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.22
Consensus pattern (289 bp):
TCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTGCAGCAGCAAGATCGATAGCACACAGAGG
GGACCGAATCGATCCCCAGCTTGCACATTCTACCTCTCCGGTCGACTGAACGCCCACACACTCGT
TTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAACCGGACCGAGGGTTG
TAGCAACAGAACCAGCAGCGGGATCGGCAGCACGCAGAGAGGGATCGAGCTGATGCCCGACTAGA
GCATTATGCCTAGTCTAAGCATACGAAGT
Found at i:24473248 original size:26 final size:26
Alignment explanation
Indices: 24473200--24473252 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24473190 GTTGACTTAG
*
24473200 GCATACGGAGTTCATCCATAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
24473226 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCA-TCCACAGTCTAA
24473252 G
1 G
24473253 ATTAGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:24473551 original size:368 final size:367
Alignment explanation
Indices: 24472848--24474521 Score: 1542
Period size: 368 Copynumber: 4.6 Consensus size: 367
24472838 GAGCATTATG
* *
24472848 CCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAA-GGTTGC-AGTA
1 CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATC-AAGGGTTGCGA-TA
* * * * * * *
24472911 GCAAGATCGGTAGCACGCAGGGGGGACCGAATTGATCCCCAGCTTGCGTATTTTACCTCT-TCGG
64 GCAGGATCGGTAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCT-GG
* * * * ** * *
24472975 TCGACTGAACGCCCACACATTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCT
128 ACGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCT
* * * * * * * * * * * *
24473040 AAGCCCTAACCGGATCGAGGGTTGTGGTAGCAGAACCGACAGTGGGATCGGCAGCATGTAGAGAG
193 AAGCCCCAGCCGGACCGAGGGTTGTGGCAACAGGATCGGCAGCGGGATCGACAGCACGTAGAGGG
* * * * * * * *
24473105 GGA-TCGAGCTGATGCCC-GGCTAGCGCATTATGCCTCTTCGATCGACCTCTTCGGTCGACTGAG
258 GGACT-GGGCTGAT-CCCTGACTTGAGCATTATGCCTCTTCGATCGGCCTCTT-AGCCGACTGAA
** * *
24473168 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
320 CGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATC
* *
24473216 CATAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAATCAAGGGTTGCGATAGC
1 CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCAAGGGTTGCGATAG-
* * *
24473281 CA-GATCGGTAGCACGCAGGGGGGACCGAGTCGATCCTCGGCTTGTGCATTCTGCCTCTCTGGAA
65 CAGGATCGGTAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGAC
*
24473345 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGGCTAA
130 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAA
* * * * * * * ** *
24473410 ACCCCAGGCAGACCGAGGGTTGTAGCAGCCGGA-CTAGCAGCGGGATCGGTAGCACGCAGAGGGG
195 GCCCCAGCCGGACCGAGGGTTGTGGCAACAGGATC-GGCAGCGGGATCGACAGCACGTAGAGGGG
* * * *
24473474 GA-TCGGGCTGATCCCTGACTTGAGCATTATGCCTCTCCAATCGGCCTCTGTAGCCGACTAAATG
259 GACT-GGGCTGATCCCTGACTTGAGCATTATGCCTCTTCGATCGGCCTCT-TAGCCGACTGAACG
* * * *
24473538 CCCACATGCTCGTTTCATGGGTAGACTTAGGCATATGGAGTTCATC
322 CCCACACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATC
* ** * * * * * * *
24473584 CCTAGTCTAAGCATACAGAGTTCATTCGTAGTCTAAGATCAGACTAGACCGAGGGTTACGGTAGT
1 CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCAAGGGTTGCGATAGC
* * * * * * * * * *
24473649 AGGATCGATAGTACGTAAGGGGGAACGGGCCCATCCCCGGCTTGCACATTCTGCCTCT-TCGATC
66 AGGATCGGTAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGA-C
* * *
24473713 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTTCATGTTTAA
130 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAA
* * * * * *
24473778 GCCCCAGTCGGACCGAGGGTTGTGACAACATGATGGGCAACGGGATCGACAGCATGTAGAGGGGG
195 GCCCCAGCCGGACCGAGGGTTGTGGCAACAGGATCGGCAGCGGGATCGACAGCACGTAGAGGGGG
** * * * *
24473843 ACTGGGCTG-TTTCTCAGCTTGCGCATTATGCCTC-TC---CGG--TC--AG-CTAC-G--CACC
260 ACTGGGCTGATCCCTGA-CTTGAGCATTATGCCTCTTCGATCGGCCTCTTAGCCGACTGAACGCC
*
24473895 CACACGCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATCC
324 CACACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCAT-C
* * * * * * **
24473940 CCT-GTCTAAGCATATGGAGTTCATTCCTAGTCTAAAATTAGACC-AAGCAGAAGGTTGCGGCAG
1 CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCA-AGGGTTGCGATAG
* * * *
24474003 CAGGATCGGTAGCACGCAGGGGGGACCGAGTCGATCCCCGACTTGCGCATTCTACCTCTCAGGTC
65 CAGGATCGGTAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGAC
* ** * * * **
24474068 GGCTGAGCACCCGTTCGCTTGTTTCGCGGGCT-GCTTAGGCATACGGAGTACATTCCACATCTAA
130 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAA
* * *
24474132 GCCCCAGCCGGACCGAGGGTTGTGGCAACAGGATCGGTAGCGGGATCGACAACACATAGAGGGGG
195 GCCCCAGCCGGACCGAGGGTTGTGGCAACAGGATCGGCAGCGGGATCGACAGCACGTAGAGGGGG
* * * ** *
24474197 ACTGGGCTGAT-TCTCGGCTT-ACGCATTATGCCTCTTCGGTCGGCCTC-TACGACCGGTTGAGC
260 ACTGGGCTGATCCCT-GACTTGA-GCATTATGCCTCTTCGATCGGCCTCTTA-G-CCGACTGAAC
* ** * * *
24474259 GTCCGTAAGCTCATTTTGTGGGTTGACTTAGGCATATGAAGTTCATC
321 GCCCACACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATC
* * * *
24474306 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAA-CAGATGGTTGCGATAG
1 CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCA-AGGGTTGCGATAG
* ** * ** * * *
24474370 TAGGATCGACAGCATGCA-TAGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCT-GAC
65 CAGGATCGGTAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGAC
* * *
24474433 AGGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATA-AGAGCT-CATTCCATGTCT
130 -GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCT
**
24474496 AAGCCCCAGCCGGATTGAGGGTTGTG
193 AAGCCCCAGCCGGACCGAGGGTTGTG
24474522 ACAGCGAGAT
Statistics
Matches: 1063, Mismatches: 207, Indels: 74
0.79 0.15 0.06
Matches are distributed among these distances:
354 113 0.11
355 161 0.15
356 5 0.00
358 6 0.01
359 2 0.00
360 2 0.00
361 1 0.00
362 3 0.00
364 4 0.00
365 3 0.00
366 100 0.09
367 131 0.12
368 526 0.49
369 6 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (367 bp):
CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCAAGGGTTGCGATAGC
AGGATCGGTAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGACG
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAG
CCCCAGCCGGACCGAGGGTTGTGGCAACAGGATCGGCAGCGGGATCGACAGCACGTAGAGGGGGA
CTGGGCTGATCCCTGACTTGAGCATTATGCCTCTTCGATCGGCCTCTTAGCCGACTGAACGCCCA
CACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATC
Found at i:24474329 original size:722 final size:721
Alignment explanation
Indices: 24473175--24474524 Score: 1668
Period size: 722 Copynumber: 1.9 Consensus size: 721
24473165 GAGCGCCCGT
*
24473175 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCATAGTCTAAGCATACGGAGTTCA
1 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCATAGTCTAAGCATACGGAGTTCA
* * * *
24473240 TTCCCAGTCTAAGATTAGACCAAATCAAGGGTTGCGATAGCCAGATCGGTAGCACGCAGGGGGGA
66 TTCCCAGTCTAAAATTAGACCAAAGCAAAGGTTGCGACAGCCAGATCGGTAGCACGCAGGGGGGA
* * * * * *
24473305 CCGAGTCGATCCTCGGCTTGTGCATTCTGCCTCTCTGGAAGGCTGAGCGCCCGCACGCTCGTTTC
131 CCGAGTCGATCCCCGACTTGCGCATTCTACCTCTCAGGAAGGCTGAGCACCCGCACGCTCGTTTC
* * ** *
24473370 GTGGGTTGGCTTAGGCATACGGAGTACATTCCATGGCTAAACCCCAGGCAGACCGAGGGTTGTAG
196 GCGGGCTGGCTTAGGCATACGGAGTACATTCCACAGCTAAACCCCAGCCAGACCGAGGGTTGTAG
* * ** * *
24473435 CAGCCGGACTAGCAGCGGGATCGGTAGCACGCAGAGGGGGATCGGGCTGATCCCTGACTTGAGCA
261 CAACAGGACTAGCAGCGGGATCGACAACACACAGAGGGGGATCGGGCTGATCCCTGACTTGAGCA
* * *
24473500 TTATGCCTCTCCAATCGGCCTCTGTAGCCGACTAAATGCCCACATGCTCGTTTCATGGGTAGACT
326 TTATGCCTCTCCAATCGGCCTCTGTAGCCGACTAAACGCCCACAAGCTCATTTCATGGGTAGACT
* * **
24473565 TAGGCATATGGAGTTCATCCCTAGTCTAAGCATACAGAGTTCATTCGTAGTCTAAGATCAGACTA
391 TAGGCATATGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGA-TA
* * * * * * * *
24473630 G-ACCGAGGGTTACGGTAGTAGGATCGATAGTACGTA-AGGGGGAACGGGCCCATCCCCGGCTTG
455 GAACAGAGGGTTACGATAGTAGGATCGACAGCACGCATA--GGGAACGAGCCCATCCCCGACTTA
*
24473693 CACATTCTGCCTCT-TCGATC-GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
518 CACATTCTGCCTCTCT-GA-CAGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCAT
* * * *
24473756 ACGGAG-TACATTTCATGTTTAAGCCCCAGTCGGACCGAGGGTTGTGACAACATGATGGGCAACG
581 A-AGAGCT-CATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGACAACATGATGGGCAACG
24473820 GGATCGACAGCATGTAGAGGGGGACTGGGCTGTTTCTCAGCTTGCGCATTATGCCTCTCCGGTCA
644 GGATCGACAGCATGTAGAGGGGGACTGGGCTGTTTCTCAGCTTGCGCATTATGCCTCTCCGGTCA
24473885 GCTACGCACCCAC
709 GCTACGCACCCAC
* * * *
24473898 ACGCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATCCCCT-GTCTAAGCATATGGAGTTC
1 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCATAGTCTAAGCATACGGAGTTC
* *
24473962 ATTCCTAGTCTAAAATTAGACC-AAGCAGAAGGTTGCGGCAG-CAGGATCGGTAGCACGCAGGGG
65 ATTCCCAGTCTAAAATTAGACCAAAGCA-AAGGTTGCGACAGCCA-GATCGGTAGCACGCAGGGG
** ** *
24474025 GGACCGAGTCGATCCCCGACTTGCGCATTCTACCTCTCAGGTCGGCTGAGCACCCGTTCGCTTGT
128 GGACCGAGTCGATCCCCGACTTGCGCATTCTACCTCTCAGGAAGGCTGAGCACCCGCACGCTCGT
* * *
24474090 TTCGCGGGCT-GCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGCCGGACCGAGGGTTG
193 TTCGCGGGCTGGCTTAGGCATACGGAGTACATTCCACAGCTAAACCCCAGCCAGACCGAGGGTTG
* * * * * *
24474154 TGGCAACAGGA-TCGGTAGCGGGATCGACAACACATAGAGGGGGA-CTGGGCTGAT-TCTCGGCT
258 TAGCAACAGGACT-AGCAGCGGGATCGACAACACACAGAGGGGGATC-GGGCTGATCCCT-GACT
* ** ** * * * ** **
24474216 T-ACGCATTATGCCTCTTCGGTCGGCCTC--TACGACCGGTTGAGCGTCCGTAAGCTCATTTTGT
320 TGA-GCATTATGCCTCTCCAATCGGCCTCTGTA-G-CCGACTAAACGCCCACAAGCTCATTTCAT
* *
24474278 GGGTTGACTTAGGCATATGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
382 GGGTAGACTTAGGCATATGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAG
* * * * * *
24474343 ATCAGATCGAACAGATGGTTGCGATAGTAGGATCGACAGCATGCATAGGGACCGAGCCGATCCCC
447 ATCAGATAGAACAGAGGGTTACGATAGTAGGATCGACAGCACGCATAGGGAACGAGCCCATCCCC
* * *
24474408 GACTTACGCATTCTGCCTCTCTGACAGGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAG
512 GACTTACACATTCTGCCTCTCTGACAGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAG
**
24474473 GCATAAGAGCTCATTCCATGTCTAAGCCCCAGCCGGATTGAGGGTTGTGACA
577 GCATAAGAGCTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGACA
24474525 GCGAGATCGG
Statistics
Matches: 526, Mismatches: 87, Indels: 31
0.82 0.14 0.05
Matches are distributed among these distances:
720 42 0.08
721 84 0.16
722 230 0.44
723 167 0.32
724 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (721 bp):
ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCATAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAAATTAGACCAAAGCAAAGGTTGCGACAGCCAGATCGGTAGCACGCAGGGGGGA
CCGAGTCGATCCCCGACTTGCGCATTCTACCTCTCAGGAAGGCTGAGCACCCGCACGCTCGTTTC
GCGGGCTGGCTTAGGCATACGGAGTACATTCCACAGCTAAACCCCAGCCAGACCGAGGGTTGTAG
CAACAGGACTAGCAGCGGGATCGACAACACACAGAGGGGGATCGGGCTGATCCCTGACTTGAGCA
TTATGCCTCTCCAATCGGCCTCTGTAGCCGACTAAACGCCCACAAGCTCATTTCATGGGTAGACT
TAGGCATATGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATAG
AACAGAGGGTTACGATAGTAGGATCGACAGCACGCATAGGGAACGAGCCCATCCCCGACTTACAC
ATTCTGCCTCTCTGACAGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAAGAG
CTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGACAACATGATGGGCAACGGGATCGA
CAGCATGTAGAGGGGGACTGGGCTGTTTCTCAGCTTGCGCATTATGCCTCTCCGGTCAGCTACGC
ACCCAC
Found at i:24474615 original size:158 final size:159
Alignment explanation
Indices: 24474400--24474818 Score: 452
Period size: 159 Copynumber: 2.6 Consensus size: 159
24474390 GGGACCGAGC
* *
24474400 CGATCCCCGACTTACGCATTCTGCCTC-TCTGACAGGCTGAGCGCCCGCATGCCCGTTTCGTGGG
1 CGAT-CCCGACTTACGCATTCTGCCTCTTCTG-CAGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * *
24474464 TTGGCTTAGGCATA-AGAGCTCATTCCATGTCTAAGCCCCAG-CCGGATTGAGGGTTGTGACAGC
64 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAGGGTTATGACAGC
* ** *
24474527 GAGATCGGTAGCACGTAAAGAGGGATCGGGT
129 AAGATCGACAGCACGTAAAGAGGGAGCGGGT
* * * * * *
24474558 TGATCCTCGACTTGCGCATTATGCCTCTTCTGCCGACTCAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCC-CGACTTACGCATTCTGCCTCTTCTGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * * * * *
24474623 TGACTTATGCATACGGAGTTCATTCCCA-ATCTAAG-ATCGGACCGGACTGAGGGTTATGGCAGC
65 TGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCACCAGACCGGACTGAGGGTTATGACAGC
** *
24474686 AAGATCGACAGCACGTAGGGGGGGAGCGGGT
129 AAGATCGACAGCACGTAAAGAGGGAGCGGGT
* * * * * * * *
24474717 CGATCCCTGAATTATGCAATCTGCCTCTCCGGCAGGCTGAGCGCCCGCACGTTCATTTTGTGGGT
1 CGATCCC-GACTTACGCATTCTGCCTCTTCTGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
24474782 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
65 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
24474819 TACGGAGCTC
Statistics
Matches: 209, Mismatches: 44, Indels: 14
0.78 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 66 0.32
159 137 0.66
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
CGATCCCGACTTACGCATTCTGCCTCTTCTGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAGGGTTATGACAGCAA
GATCGACAGCACGTAAAGAGGGAGCGGGT
Found at i:24475551 original size:26 final size:26
Alignment explanation
Indices: 24475515--24475566 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24475505 TTGACTTAGG
* *
24475515 CATATGGAGTTCA-TCCCTAGTCTAAA
1 CATACGGAGTTAATTCCC-AGTCTAAA
24475541 CATACGGAGTTAATTCCCAGTCTAAA
1 CATACGGAGTTAATTCCCAGTCTAAA
24475567 ATTAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTAATTCCCAGTCTAAA
Found at i:24475900 original size:26 final size:26
Alignment explanation
Indices: 24475870--24475922 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24475860 GTTAACTTAG
*
24475870 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
24475896 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
24475922 G
1 G
24475923 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:24476089 original size:25 final size:26
Alignment explanation
Indices: 24476054--24476105 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
24476044 GTTGACTTAG
24476054 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24476080 GCAT-CGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24476105 G
1 G
24476106 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24476151 original size:183 final size:184
Alignment explanation
Indices: 24475824--24476240 Score: 561
Period size: 183 Copynumber: 2.3 Consensus size: 184
24475814 TCCTACCTTT
* * * * *
24475824 TCTGGTCGGTTGAGCACCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCTC
1 TCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
* **
24475889 AGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGCATTGCGACAGCAGG
66 AGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGCATTAAGACAGCAGG
* *
24475954 ATCGACAGCACGCAGGGGGGACC-GAGCCAATCCCCAGCTTGCGCATTTTGCCTC
131 ATCGACAGCACGCAGGGAGGACCAG-GCCAATCCCCAGCTTGCGCATTCTGCCTC
* * *
24476008 TCTGGTCAGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
1 TCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
* ** *
24476073 AGTCTAAGCAT-CGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTAAGACAGCATG
66 AGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGCATTAAGACAGCAGG
* * * * * *
24476137 ATGGGCAGCACGCAGGGAGGATCAGGCCGATCCCCGGCTTGTGCATTCTGCCTC
131 ATCGACAGCACGCAGGGAGGACCAGGCCAATCCCCAGCTTGCGCATTCTGCCTC
* * * *
24476191 TCCGATCGGCTGAGCGCCCGCAC-TTCGTTTCATGGGTTGGCTTAGGCATA
1 TCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
24476241 TGAAGTACAT
Statistics
Matches: 202, Mismatches: 30, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
182 24 0.12
183 109 0.54
184 69 0.34
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (184 bp):
TCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
AGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGCATTAAGACAGCAGG
ATCGACAGCACGCAGGGAGGACCAGGCCAATCCCCAGCTTGCGCATTCTGCCTC
Found at i:24476458 original size:26 final size:26
Alignment explanation
Indices: 24476406--24476458 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24476396 GTTGACTTAG
* *
24476406 GCATACGGAGTTCATCTCCTGTCTAA
1 GCATACGGAGTTCATCTCCAGTATAA
24476432 GCATACGGAGTTCAT-TCCCAGTATAA
1 GCATACGGAGTTCATCT-CCAGTATAA
24476458 G
1 G
24476459 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTATAA
Found at i:24476547 original size:536 final size:539
Alignment explanation
Indices: 24475462--24476556 Score: 1276
Period size: 536 Copynumber: 2.0 Consensus size: 539
24475452 TTACGCATCC
* *
24475462 TGCCTCTCTAGTCGGCTGAGCGCCTGCACGCACATTTCGTGAGTTGACTTAGGCATATGGAGTTC
1 TGCCTCTCTGGTCGGCTGAGCGCCTGCACGCACATTTCGTGAGTTGACTTAGGCATACGGAGTTC
* * * *
24475527 ATCCCTAGTCTAAACATACGGAGTTAATTCCCAGTCTAAAATTAGACCGGATCGAGGGCTGCAGT
66 ATCCCCAGTCTAAACATACGGAGTTAATTCCCAGTCTAAAATCAGACCGGATCGAGGGCTGAAGC
* * * * * * *
24475592 AGTAGGATCGGTAGCATGCAGGGGGGACCTAACCGATCCTCAGCTTGTGTATTCTGCCTCTCCGG
131 AGCAGGATCGGCAGCACGCAGGGAGGACCTAACCGATCCCCAGCTTGTGCATTCTGCCTCTCCGA
* * * * *
24475657 CCTGTTGAGTGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCC
196 CCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCC
* * * * * * * * *
24475722 AAACCTCAATCGGACCGAGGGTTGTGGCAACAGGACTGGCAACGGGATCGACAGTACACAGAGGG
261 AAACCCCAACCGAACCGAGCGTTGTGACAACAGGACCGGCAACGAGATCGACAGCACACAGAGGA
* * * * * *
24475787 GGATCGGGCTGATCCTCGACTTACGCATCCTACCTTTTCTGGTCGGTTGAGCACCCGCACGCTCA
326 GGACCGAGCTGATCCTAGACTTACGCATCCTACC-TCTCCGGCCGGTTGAGCACCCGCACGCTCA
24475852 TTTCATGGGTTAACTTAGGCATACGGAGTTCATCCTCAGTCTAAGCATACGAAGTTCATTCCCAG
390 TTTCATGGGTTAACTTAGGCATACGGAGTTCATCCTCAGTCTAAGCATACGAAGTTCATTCCCAG
* * * * * *
24475917 TCTAAGATCAGATCGGATCGAGCATTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCGAGCC
455 TATAAGATCAGACCGAATCGAGCATTACGACAGCAGGATCGACAGCACGCAGAGGGGACAGAGCC
24475982 AATCCCCAGCTTGCGCATTT
520 AATCCCCAGCTTGCGCATTT
* * * *
24476002 TGCCTCTCTGGTCAGCTGAGCG-CTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
1 TGCCTCTCTGGTCGGCTGAGCGCCT-GCACGCACATTTCGTGAGTTGACTTAGGCATACGGAGTT
* * * *
24476066 CATCCCCAGTCTAAGCAT-CGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGG-TTAAG
65 CATCCCCAGTCTAAACATACGGAGTTAATTCCCAGTCTAAAATCAGACCGGATCGAGGGCTGAAG
* * * * *
24476129 ACAGCATGATGGGCAGCACGCAGGGAGGATC-AGGCCGATCCCCGGCTTGTGCATTCTGCCTCTC
130 -CAGCAGGATCGGCAGCACGCAGGGAGGACCTA-ACCGATCCCCAGCTTGTGCATTCTGCCTCTC
* *
24476193 CGATCGGCTGAGCGCCCGCAC-TTCGTTTCATGGGTTGGCTTAGGCATATGAAGTACATTCCACG
193 CGACCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACG
* * * * * * *
24476257 TCTAAGCCCCAACCGAACTGAGCGTTGTGACAGCAGGACCGAG-AGCGAGATCGGCAGCACGCAG
258 TCCAAACCCCAACCGAACCGAGCGTTGTGACAACAGGACCG-GCAACGAGATCGACAGCACACAG
* ** ** * ** *
24476321 AGGAGTACCGAGCTGATCCCTAG-CTTGTGCATTGTGCC-CTCCGGCCGGTTGAGTGCCCGTACG
322 AGGAGGACCGAGCTGAT-CCTAGACTTACGCATCCTACCTCTCCGGCCGGTTGAGCACCCGCACG
* * * * *
24476384 CTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCAT-CTCCTGTCTAAGCATACGGAGTTCATT
386 CTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCT-CAGTCTAAGCATACGAAGTTCATT
** * *
24476448 CCCAGTATAAGATCAGACCGAATCGAGGGTTACGATAGCAGGATCGATAGCACGCAGAGGGGATC
450 CCCAGTATAAGATCAGACCGAATCGAGCATTACGACAGCAGGATCGACAGCACGCAGAGGGGA-C
* * *
24476513 AG-GCCGATCCCCGGCTTGTGCATTCT
514 AGAGCCAATCCCCAGCTTGCGCATT-T
* *
24476539 T-TCTCTCTGATCGGCTGA
1 TGCCTCTCTGGTCGGCTGA
24476557 AGCCCCAGTT
Statistics
Matches: 462, Mismatches: 85, Indels: 20
0.81 0.15 0.04
Matches are distributed among these distances:
535 2 0.00
536 162 0.35
537 4 0.01
538 114 0.25
539 109 0.24
540 71 0.15
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (539 bp):
TGCCTCTCTGGTCGGCTGAGCGCCTGCACGCACATTTCGTGAGTTGACTTAGGCATACGGAGTTC
ATCCCCAGTCTAAACATACGGAGTTAATTCCCAGTCTAAAATCAGACCGGATCGAGGGCTGAAGC
AGCAGGATCGGCAGCACGCAGGGAGGACCTAACCGATCCCCAGCTTGTGCATTCTGCCTCTCCGA
CCGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCC
AAACCCCAACCGAACCGAGCGTTGTGACAACAGGACCGGCAACGAGATCGACAGCACACAGAGGA
GGACCGAGCTGATCCTAGACTTACGCATCCTACCTCTCCGGCCGGTTGAGCACCCGCACGCTCAT
TTCATGGGTTAACTTAGGCATACGGAGTTCATCCTCAGTCTAAGCATACGAAGTTCATTCCCAGT
ATAAGATCAGACCGAATCGAGCATTACGACAGCAGGATCGACAGCACGCAGAGGGGACAGAGCCA
ATCCCCAGCTTGCGCATTT
Found at i:24476887 original size:26 final size:26
Alignment explanation
Indices: 24476850--24476902 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24476840 GTTGACTTAG
*
24476850 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
24476876 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
24476902 G
1 G
24476903 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:24477472 original size:11 final size:11
Alignment explanation
Indices: 24477456--24477481 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
24477446 CCCGGGGCAC
24477456 CATCGTCGGAG
1 CATCGTCGGAG
24477467 CATCGTCGGAG
1 CATCGTCGGAG
24477478 CATC
1 CATC
24477482 ACCGGAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:24479946 original size:171 final size:171
Alignment explanation
Indices: 24479618--24479950 Score: 438
Period size: 171 Copynumber: 1.9 Consensus size: 171
24479608 CCTCTCTGGT
* * * *
24479618 CGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCGCCAGTCTA
1 CGGCTGAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCGCCAGTCTA
* * * * * * * **
24479683 AGTATACGAAGTTCATTCCTAGTCTAAGATCGAATCGGATTGAGGGTTGCGGTAGTAGGACCGGC
66 AGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGTAGCAGGACCAAC
* *
24479748 AGTACGTATGGGGGAAAGGGTCGATCCCCGGCCTCTTCGTC
131 AGCACGTATGGGGGAAAGGGCCGATCCCCGGCCTCTTCGTC
24479789 CGGCTGAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATC-CCTAGTCT
1 CGGCTGAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCGCC-AGTCT
* *
24479853 AAGCATACCG-AGTTCATTCCCATTCTAAGATCAAACCAGATCGAGGGTTGCGGTAGCAGGATCA
65 AAGCATA-CGAAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGTAGCAGGACCA
* **
24479917 ATAGCACGTA-GAGGGGACCGGGCCGATCCCCGGC
129 ACAGCACGTATG-GGGGAAAGGGCCGATCCCCGGC
24479951 TTGCGCATTC
Statistics
Matches: 139, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
170 3 0.02
171 134 0.96
172 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (171 bp):
CGGCTGAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCGCCAGTCTA
AGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGTAGCAGGACCAAC
AGCACGTATGGGGGAAAGGGCCGATCCCCGGCCTCTTCGTC
Found at i:24480368 original size:26 final size:26
Alignment explanation
Indices: 24480326--24480378 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24480316 GTTGGCTTAG
*
24480326 GCATATGGAGTTAATT-CCATGTCTAA
1 GCATATGGAGCTAATTCCCA-GTCTAA
*
24480352 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATATGGAGCTAATTCCCAGTCTAA
24480378 G
1 G
24480379 ATTTTGGGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGCTAATTCCCAGTCTAA
Found at i:24481063 original size:26 final size:26
Alignment explanation
Indices: 24481026--24481083 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
24481016 CGTGGGTTGA
*
24481026 CTAAGGCATACGGAGTTCATCCCCAGT
1 CTAA-GCATACGAAGTTCATCCCCAGT
* *
24481053 CTAAGCATACGAAGTTCATTCTCAGT
1 CTAAGCATACGAAGTTCATCCCCAGT
24481079 CTAAG
1 CTAAG
24481084 ATAAGACCGA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
CTAAGCATACGAAGTTCATCCCCAGT
Done.