Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 247 of 402
Found at i:24482085 original size:170 final size:172
Alignment explanation
Indices: 24481782--24482188 Score: 498
Period size: 170 Copynumber: 2.4 Consensus size: 172
24481772 AGTGTTGCAG
* * ** * * *
24481782 CAGCAGGATCGACAGCACACA-AGGGGGACCGAGCCAATCCCTGGCTTGCACATTCTACCTCTCC
1 CAGCAGGATCAACAGCACACAGAGGGGGATCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTCC
* * ** *
24481846 GGTCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGT
66 GGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGT
* * * *
24481911 CTAAGCCCCAATCGGA-CCGA-GGTTGTGATAGCAGGATCGG
131 CTAAGCCCCAACCGGACCCGAGGGTTGTGACAGCAGGACCGA
* * * *
24481951 TAGC-GAGATCAACAGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTACGCATTATGCCTCTC
1 CAGCAG-GATCAACAGCACACAGAGGGGGATCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTC
* *
24482015 CGGCCGACTGATCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACG
65 CGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACG
* * *
24482080 TCTAAGCCCTAGCCGGACCCGAGGGTTGTGGCAGCAGGACCGA
130 TCTAAGCCCCAACCGGACCCGAGGGTTGTGACAGCAGGACCGA
* * * * **
24482123 CAGCAGGATCGACAGTATACAGAGGGGGATCGAGTTGATCCCCAGCTTGCGCATTATGCCTCTCC
1 CAGCAGGATCAACAGCACACAGAGGGGGATCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTCC
24482188 G
66 G
24482189 ACCGGCCTCT
Statistics
Matches: 198, Mismatches: 35, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
168 1 0.01
169 16 0.08
170 106 0.54
171 4 0.02
172 70 0.35
173 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.21
Consensus pattern (172 bp):
CAGCAGGATCAACAGCACACAGAGGGGGATCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTCC
GGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGT
CTAAGCCCCAACCGGACCCGAGGGTTGTGACAGCAGGACCGA
Found at i:24482567 original size:366 final size:366
Alignment explanation
Indices: 24481964--24482860 Score: 1084
Period size: 367 Copynumber: 2.4 Consensus size: 366
24481954 CGAGATCAAC
* * * * * * * * * *
24481964 AGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTACGCATTATGCCTCTCCGGCCGACTGATCG
1 AGCACGCAG-GGGGGACCGGACCGATCCCCGACTTACGCATTCTACCTCTCCGGCTGATTGAGCG
* * *
24482029 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGCC
65 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCC
* * * * *
24482094 GGACCCGAGGGTTGTGGCAGCAGGACCGACAGCAGGATCGACAGTATACAGAGGGGGATCGAGTT
130 GGA--CAAGGGTTGTGGCAGCAGGACCGACAGCAGGATCGACAGCACACAGAAGGGGACCGAGTT
* * * * *
24482159 GATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCCTCTCCGGTCGGCTGAGCGCCCGCATGCT
193 AATCCCCAGCTTGCGCATTATGCCTCTCCGACCGACCTCTCCGATCGACTGAGCGCCCGCACGCT
* * * *
24482224 CGTTTCGTGGG-TGACCTAGGCATATGTAGTTCATCCCCAGTCTAAGCATAC-GAGTTCATTCCC
258 CGTTTCATGGGTTGACCTAGGCATACGGAGTTCATCCCCAGTCTAAGCACACGGAGTTCATTCCC
* * * * * *
24482287 AGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGTAGGATCGAT
323 AGTCCAAGATCAG-CCGGACCGAGGGTTACGACAATAGGATCGAT
* * * * * * *
24482332 GGCACGCAGGGGGGACCGGACCGATCGCCGGCTTGCGCATTCTGCCTCTTC-GATCGATTGAGCG
1 AGCACGCAGGGGGGACCGGACCGATCCCCGACTTACGCATTCTACCTCTCCGGCT-GATTGAGCG
* ** *
24482396 CCTGCACGCCCGTTTTGTTGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCC
65 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCC
* ** * *
24482461 GGACTAAGGGTTGTGGCAGCAGGATCGACAGTGGGATCGACAGCACGCAGAAGGGGACCGGGTTA
130 GGAC-AAGGGTTGTGGCAGCAGGACCGACAGCAGGATCGACAGCACACAGAAGGGGACCGAGTTA
* * ** * * *
24482526 ATTCCCGGCTTGCGCATTATGCCTCTCCGGTCGATCTCTCCGATCGATTGAGTGCCCGCACGCTC
194 ATCCCCAGCTTGCGCATTATGCCTCTCCGACCGACCTCTCCGATCGACTGAGCGCCCGCACGCTC
*
24482591 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCACACGGAGTTCATTCCCA
259 GTTTCATGGGTTGACCTAGGCATACGGAGTTCATCCCCAGTCTAAGCACACGGAGTTCATTCCCA
* *
24482656 GTCCAAGATCAGCCGGACCGAGGGTTATGGCAATAGGATCGAT
324 GTCCAAGATCAGCCGGACCGAGGGTTACGACAATAGGATCGAT
* * * *
24482699 AGCACGCAGGTGGGACCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCGGCTGGTTGAGTGC
1 AGCACGCAGGGGGGACCGGACCGATCCCCGACTTACGCATTCTACCTCTCCGGCTGATTGAGCGC
* * *
24482764 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGTC
66 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCCAGCC
24482828 GGACAGAGGGTTGTGGCAGC-GAGACCGACAGCA
130 GGACA-AGGGTTGTGGCAGCAG-GACCGACAGCA
24482861 TGTAGAGGGG
Statistics
Matches: 445, Mismatches: 76, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
365 1 0.00
366 115 0.26
367 295 0.66
368 34 0.08
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (366 bp):
AGCACGCAGGGGGGACCGGACCGATCCCCGACTTACGCATTCTACCTCTCCGGCTGATTGAGCGC
CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCG
GACAAGGGTTGTGGCAGCAGGACCGACAGCAGGATCGACAGCACACAGAAGGGGACCGAGTTAAT
CCCCAGCTTGCGCATTATGCCTCTCCGACCGACCTCTCCGATCGACTGAGCGCCCGCACGCTCGT
TTCATGGGTTGACCTAGGCATACGGAGTTCATCCCCAGTCTAAGCACACGGAGTTCATTCCCAGT
CCAAGATCAGCCGGACCGAGGGTTACGACAATAGGATCGAT
Found at i:24483840 original size:26 final size:26
Alignment explanation
Indices: 24483804--24483855 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
24483794 GTTAACTTAG
24483804 GCATACGGAGTTAATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* * *
24483830 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
24483856 AATCAAACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:24484189 original size:26 final size:26
Alignment explanation
Indices: 24484159--24484211 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
24484149 GTTGACTTAG
24484159 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24484185 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24484211 G
1 G
24484212 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24485192 original size:26 final size:26
Alignment explanation
Indices: 24485163--24485215 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24485153 GTTGACTTAG
24485163 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24485189 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24485215 G
1 G
24485216 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24485809 original size:342 final size:340
Alignment explanation
Indices: 24485186--24485812 Score: 837
Period size: 342 Copynumber: 1.8 Consensus size: 340
24485176 ATCCCCAGTC
** *
24485186 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGACAGCAGGATCG
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGTTGCGACAGCAGGATCG
* * * **
24485251 ACAGCATGCAGGGGGACCGAGCTGATCCCTGCTTGCGCATTCTGCCTCTCCGGGCCGACTGAGTG
66 ACAGCACGCAGGGGGACCGAGCTGATCCCTGCATGCGCATTCTGCCTCTCCGGACCGACTGAGCA
* * *
24485316 CCCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGTC
131 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGTC
* * *
24485381 AGACCAAGGTTGTGGCAGTAGGATCGGCATCGAGATTGGCAGCACGCAGAGAGGGACCGGGCTGA
196 AGACCAAGGTTGTGGCAGTAGGATCAGCAGCGAGATTGACAGCACGCAGAGAGGGACCGGGCTGA
*
24485446 TCCCCGCCTGGCACATTATGCCTCTCCGACCGACCTCTCCGATCGGTTGAGTGCCCGCACGCTCG
261 TCCCCGACTGGCACATTATGCCTCTCCGACCGACCTCTCCGATCGGTTGAGTGCCCGCACGCTCG
24485511 TTTCGTGGGTTCACT
326 TTTCGTGGGTTCACT
* * *
24485526 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGTACCAGATCAAGGGTTGCGACAGCATGATCG
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGTTGCGACAGCAGGATCG
* * * * * * * *
24485591 GCAGCACGCAGGGGGGACTG-GGTCGATCCTTGACATGCGCATTCTGCCTTTTC-GATCGATTGA
66 ACAGCACGCA-GGGGGACCGAGCT-GATCCCTG-CATGCGCATTCTGCCTCTCCGGACCGACTGA
* *
24485654 GCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCA
128 GCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCA
** *** * * *
24485719 GTTGGATCGGGGGTTGTGGCAGTAGGA-CTAGTAGCGGGATTGACAGCACGCAGAGGGGGACCGG
193 GTCAGA-CCAAGGTTGTGGCAGTAGGATC-AGCAGCGAGATTGACAGCACGCAGAGAGGGACCGG
* * *
24485783 GCTGATCCCTGACTTGCGCATTATGCCTCT
256 GCTGATCCCCGACTGGCACATTATGCCTCT
24485813 TCGGCTGGCT
Statistics
Matches: 243, Mismatches: 39, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
340 69 0.28
341 85 0.35
342 89 0.37
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (340 bp):
TAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGTTGCGACAGCAGGATCG
ACAGCACGCAGGGGGACCGAGCTGATCCCTGCATGCGCATTCTGCCTCTCCGGACCGACTGAGCA
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGTC
AGACCAAGGTTGTGGCAGTAGGATCAGCAGCGAGATTGACAGCACGCAGAGAGGGACCGGGCTGA
TCCCCGACTGGCACATTATGCCTCTCCGACCGACCTCTCCGATCGGTTGAGTGCCCGCACGCTCG
TTTCGTGGGTTCACT
Found at i:24486334 original size:158 final size:157
Alignment explanation
Indices: 24485890--24486384 Score: 552
Period size: 158 Copynumber: 3.1 Consensus size: 157
24485880 CTAAGTATAT
24485890 GGAGTTCATTCCCA-GTCTAAGATTC-GATCGGACCGAAGGTTGTGGCAGTAGGATCGGCAGCAC
1 GGAGTTCATT-CCATGTCTAAGA-TCAGATCGGACCG-AGGTTGTGGCAGTAGGATCGGCAGCAC
* * * *
24485953 GCA-GGGGCACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGACTGAGCGTCCGCA
63 GCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCA
* * *
24486017 CACCCGTTTCATGGGTT-AGCTTAGGCATAG
128 CGCTCGTTTCATGGGTTGAG-TTAGGCATAC
* ** * ** *
24486047 GGAGCTCATTCCATGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGCAGCGGGACCGGCAGCACG
1 GGAGTTCATTCCATGTCTAAG-ATCAGATCGGACCGA-GGTTGTGGCAGTAGGATCGGCAGCACG
* * * ** * * * *
24486111 CAGAGGGAGACCGGGCCGATCCCCGACTTGCGCATTAGGCCTCTTCGGTCGGCTCAGCACCCGCA
64 CAG-GGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCA
*
24486176 CGCTCGTTTCATGGGTTGAGTTATGCATAC
128 CGCTCGTTTCATGGGTTGAGTTAGGCATAC
* * *** * * * *
24486206 AGAGTTCATTCC-TAGTCTAAGATCAGATCGAACCGAGGTTGCAACCGTAGGATCGACAGTACAC
1 GGAGTTCATTCCAT-GTCTAAGATCAGATCGGACCGAGGTTGTGGCAGTAGGATCGGCAGCACGC
*
24486270 AGGGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCAC
65 A-GGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCAC
*
24486335 GCTCGTTTCATGGGTTGACTTAGGCATAC
129 GCTCGTTTCATGGGTTGAGTTAGGCATAC
24486364 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
24486385 CATACGGAGC
Statistics
Matches: 274, Mismatches: 53, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
156 4 0.01
157 50 0.18
158 121 0.44
159 97 0.35
160 2 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (157 bp):
GGAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGTTGTGGCAGTAGGATCGGCAGCACGCA
GGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGC
TCGTTTCATGGGTTGAGTTAGGCATAC
Found at i:24486408 original size:26 final size:26
Alignment explanation
Indices: 24486358--24486410 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24486348 GTTGACTTAG
* *
24486358 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24486384 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24486410 G
1 G
24486411 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24487326 original size:183 final size:184
Alignment explanation
Indices: 24487080--24487462 Score: 495
Period size: 183 Copynumber: 2.1 Consensus size: 184
24487070 CATTTCATGG
*
24487080 GTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAACATAAGGAGTTCATTCCCAGTCTAAGAT
1 GTTGACTTAGGCATACAAAGTTCATCCCCAGTCTAAACATAAGGAGTTCATTCCCAGTCTAAGAT
* * * *
24487145 CGA-ACCAGATCGAGGGTTGCGGTAGCAGGATCGACAGCACACAGGAGGGATC-GAGCCGATCCC
66 -GAGACCAGATCAAGGGTTACGGTAGCAGGATCGACAGCACACAAGAGGGACCGGA-CCGATCCC
** * * *
24487208 CGGCTTGTGCATTCTGCCTCTTCGGTTGGCTGAGTGCTCGCACTTTCGTTTCGTGC
129 CAACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCTCGCACTTTCGTTTCGTGC
* * *
24487264 GTTGACTT-GGCATACAAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGAT
1 GTTGACTTAGGCATACAAAGTTCATCCCCAGTCTAAACATAAGGAGTTCATTCCCAGTCTAAGAT
* * * * *
24487328 TAGACCGGATCAAGGGTTACGGTAGTAGGATCGACAGCACGCAAGAGGGACCGGACCGATCCCTA
66 GAGACCAGATCAAGGGTTACGGTAGCAGGATCGACAGCACACAAGAGGGACCGGACCGATCCCCA
** * **
24487393 ACTTGCGCATTCTGCCTCTCCGGTCGGCTGAACGCCCGCACGCTCGTTTCGTG-
131 ACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCTCGCACTTTCGTTTCGTGC
*
24487446 GATTGGCTTAGGCATAC
1 G-TTGACTTAGGCATAC
24487463 GGAGTACATT
Statistics
Matches: 171, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
182 2 0.01
183 152 0.89
184 17 0.10
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (184 bp):
GTTGACTTAGGCATACAAAGTTCATCCCCAGTCTAAACATAAGGAGTTCATTCCCAGTCTAAGAT
GAGACCAGATCAAGGGTTACGGTAGCAGGATCGACAGCACACAAGAGGGACCGGACCGATCCCCA
ACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCTCGCACTTTCGTTTCGTGC
Found at i:24487677 original size:26 final size:26
Alignment explanation
Indices: 24487640--24487692 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24487630 GTTGACTTAG
24487640 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
24487666 GCATACTG-AGTTCATTCCCAGTCTAA
1 GCATAC-GAAGTTCATCCCCAGTCTAA
24487692 G
1 G
24487693 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24488096 original size:159 final size:159
Alignment explanation
Indices: 24487663--24488168 Score: 477
Period size: 159 Copynumber: 3.2 Consensus size: 159
24487653 ATCCCCAGTC
* * * ** *
24487663 TAAGCATACTGAGTTCATTCCCA-GTCTAAGATCGGATCAGACTGAGGGTTACGACAGCCGGATC
1 TAAGCATACGGAGTTCATT-CCATGTCTAAGATCGAATCAGACCGAGGGTTACGGTAGCAGGATC
* * * * *
24487727 GATAGCACGTA-GAGGGGATCAGGTCGATCCTTGGCTTGCGCATTCTGCCTCTTCGACTAGCTGA
65 GATAGCACGCAGGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCAGCTGA
* ** *
24487791 GCACCCGCACGCCCGTTTCGTGGGTTGGCT
130 GCGCCCGCACGCTTGTTTCGTGGGTTGACT
* * * ** * ** * ** * *
24487821 TAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGTAGTGGGACCA
1 TAAGCATACGGAGTTCATTCCATGTCTAAGATCGAATCAGACCGAGGGTTACGGTAGCAGGATCG
* * * * * * *
24487886 ACAGCACGCAGAGGGGGACCGGG-CTGATCTTCGGCTTGCGCATTATACCTCTTCGACCAGCTCA
66 ATAGCACGCAGGGGGGGATCGGGTC-GATCCTCGGCTTGCGCATTCTGCCTCTTCGACCAGCTGA
*
24487950 GCGCCCGCACGCTTGTTTCATGGGTTGACT
130 GCGCCCGCACGCTTGTTTCGTGGGTTGACT
* *
24487980 TATGCATACGGAGTTCATTCCCA-GTCTAAGATCGAATC-GAACCGAGGGTTGCGGTAGCAGGAT
1 TAAGCATACGGAGTTCATT-CCATGTCTAAGATCGAATCAG-ACCGAGGGTTACGGTAGCAGGAT
** * * * *
24488043 CGATAGCACGCAGGGGGGGATCGGGTCGATCCTCGATTTGCACATTCTGCCTC-TCCAGCCGGTT
64 CGATAGCACGCAGGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGA-CCAGCT
* *
24488107 GAGTGCCCGCACACTTGTTTCGTGGGTT-AGCT
128 GAGCGCCCGCACGCTTGTTTCGTGGGTTGA-CT
**
24488139 TAAGCATACGTTGTTCATTCCATGTCTAAG
1 TAAGCATACGGAGTTCATTCCATGTCTAAG
24488169 CATACAGAGC
Statistics
Matches: 271, Mismatches: 68, Indels: 17
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 60 0.22
159 204 0.75
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
TAAGCATACGGAGTTCATTCCATGTCTAAGATCGAATCAGACCGAGGGTTACGGTAGCAGGATCG
ATAGCACGCAGGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCAGCTGAG
CGCCCGCACGCTTGTTTCGTGGGTTGACT
Found at i:24488883 original size:183 final size:183
Alignment explanation
Indices: 24488521--24488921 Score: 416
Period size: 183 Copynumber: 2.2 Consensus size: 183
24488511 AGTGCCCGTG
* * * * *
24488521 CGCTCGTTTCATGGGTTGACTTAGGCTTAAGGAGTTCATCCCCAGTCTAAGCGTACGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCTAACCATACGAAGTTCAT
* * *
24488586 TCCCAGTTTAAGATCGGACCGAAATGAGATTACGACAGCAGGATCGACAACACAAAGGAGGGATC
66 TCCCAGTCTAAGATCGGACCGAAATGAGATTACGACAACAGGATCGACAACACAAAGGAGGGACC
* * * *** ** * * *
24488651 GGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACA
131 AGGCCGAGCCCCAACTTACGCATTCTGCCTCTCCAACCGGCTAAGCGCCCACA
*
24488704 CGCTCGTTTCGTGGGTTGACTTTGGCATACA-GAGTTCATCCCCAGTCTAACCATACGAAGTTCA
1 CGCTCGTTTCGTGGGTTGACTTAGGCATA-AGGAGTTCATCCCCAGTCTAACCATACGAAGTTCA
* * ** * * *
24488768 TTCCCAGTCTAAGATCGGACCG-GATCGAGGGTTGTGACAACAGGATTGGCAGCACATAAGG-GG
65 TTCCCAGTCTAAGATCGGACCGAAAT-GA-GATTACGACAACAGGATCGACAACACA-AAGGAGG
* *
24488831 GACCAGGCCGAGCCCCAACTTACGCATTTTG-CTCTCCAACCAGG-TAAGCGCCCGCA
127 GACCAGGCCGAGCCCCAACTTACGCATTCTGCCTCTCCAACC-GGCTAAGCGCCCACA
* * * * *
24488887 CGCTCATTTCGTAGGTTGGCTTAGACATACGGAGT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGT
24488922 ACATTCCACG
Statistics
Matches: 177, Mismatches: 35, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
182 2 0.01
183 125 0.71
184 46 0.26
185 4 0.02
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.23
Consensus pattern (183 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCTAACCATACGAAGTTCAT
TCCCAGTCTAAGATCGGACCGAAATGAGATTACGACAACAGGATCGACAACACAAAGGAGGGACC
AGGCCGAGCCCCAACTTACGCATTCTGCCTCTCCAACCGGCTAAGCGCCCACA
Found at i:24489382 original size:367 final size:369
Alignment explanation
Indices: 24488677--24489674 Score: 985
Period size: 367 Copynumber: 2.7 Consensus size: 369
24488667 TGTGCATTCT
* * * * *
24488677 GCCTCTCCGATCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTTGGCATAC-AGAGTTC
1 GCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGA-AGTTC
* * * * * * **
24488741 ATCCCCAGTCTAACCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGA-TCGAGGGTTGTGA
65 ATCCCCAGTCTAAGCATACGCAGTTCATTCCAAGTCTAAGATCGAACCAGACT-GAGGATTACGA
* ** * * * * * * * * *
24488805 CAACAGGATTGGCAGCACATAAGG-GGGACCAGGCCGAGCCCCAACTTACGCATTTTG-CTCTCC
129 CAGCAGGATTGATAGCACACAGGGAGGGACCGGGTCGATCCCCGACTTACACATTCTGCCTCTCG
* * * * * *** * *
24488868 AACCAGG-TAAGCGCCCGCACGCTCATTTCGTAGGTTGGCTTAGACATACGGAGTACATTCCACG
194 GA-CTGGCTGAGCACCCGCACGCTCGTTTCACGGGTTGGCTTAGGCATACGGAGTATATTCCACG
* * * * * *
24488932 TCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGTAGGATCGGCAGCGGGATCGATAGCATGCAGA
258 TCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGTAGGACCGACAACGAGATCGACAGCATGCAGA
* * * * *
24488997 GGGGGACCAGGTTGATCCCCGACTTAAGCATTATGCCTTTCTGCTCG
323 GGGGGAACAGGCTGATCCCCAACTTAAGCATTATGCCTCTCCGCTCG
* * * * * *
24489044 GCCTCTTCGACCGACTGAGTGCTCGTACGCTCGTTTCATGGGTTGAGTTAGGCCTACGAAGTTCA
1 GCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCA
* * *
24489109 TCCCCATTCTAAGCATATGCAGTTCATTCCTAA-TCTAAGAAT-GAACCAGATTGAGGATTACGA
66 TCCCCAGTCTAAGCATACGCAGTTCATTCC-AAGTCTAAG-ATCGAACCAGACTGAGGATTACGA
* * * * *
24489172 TAGCAGGATTGATAGCGCATAGGG-GGTACCGGG-CTGATCCCCGACTTACGCATTCTGCCTCTC
129 CAGCAGGATTGATAGCACACAGGGAGGGACCGGGTC-GATCCCCGACTTACACATTCTGCCTCTC
* * * *
24489235 GGTC-GGTTGAGCACCCGTATGCTCGTTTCACGGGTTGGCTTAGGCATACGGAGTATATTCCACG
193 GGACTGGCTGAGCACCCGCACGCTCGTTTCACGGGTTGGCTTAGGCATACGGAGTATATTCCACG
* * * *
24489299 TCTGAGCCCCAGCTAGACCGAGGGTTGTGGTAGCTA-GACCGACAACGAGATCGACAGCATGCAG
258 TCTAAGCCCCAACCAGACCGAGGGTTGTGGCAG-TAGGACCGACAACGAGATCGACAGCATGCAG
* ** * * * *
24489363 ATGGGGAATGGGCTGATCCCTAAGTTATGCATTATGCCTCTCCGGTCG
322 AGGGGGAACAGGCTGATCCCCAACTTAAGCATTATGCCTCTCCGCTCG
* * ** *
24489411 GCCTCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCA
* ** * * *
24489476 TCCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGAATTAGACTGAGGGTTGCGGCA
66 TCCCCAGTCTAAGCATACGCAGTTCATTCCAAGTCTAAGATCGAACCAGACTGAGGATTACGACA
* * * *
24489541 GCAGGATTGATAGCACACAGGGAGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCTGA
131 GCAGGATTGATAGCACACAGGGAGGGACCGGGTCGATCCCCGACTTACACATTCTGCCTCTCGGA
* ** * *
24489606 CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGT-TCATTCCATGTC
196 CTGGCTGAGCACCCGCACGCTCGTTTCACGGGTTGGCTTAGGCATACGGAGTAT-ATTCCACGTC
24489670 TAAGC
260 TAAGC
24489675 ATACAAAGCT
Statistics
Matches: 511, Mismatches: 106, Indels: 26
0.79 0.16 0.04
Matches are distributed among these distances:
366 7 0.01
367 400 0.78
368 47 0.09
369 57 0.11
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (369 bp):
GCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCA
TCCCCAGTCTAAGCATACGCAGTTCATTCCAAGTCTAAGATCGAACCAGACTGAGGATTACGACA
GCAGGATTGATAGCACACAGGGAGGGACCGGGTCGATCCCCGACTTACACATTCTGCCTCTCGGA
CTGGCTGAGCACCCGCACGCTCGTTTCACGGGTTGGCTTAGGCATACGGAGTATATTCCACGTCT
AAGCCCCAACCAGACCGAGGGTTGTGGCAGTAGGACCGACAACGAGATCGACAGCATGCAGAGGG
GGAACAGGCTGATCCCCAACTTAAGCATTATGCCTCTCCGCTCG
Found at i:24489491 original size:26 final size:26
Alignment explanation
Indices: 24489462--24489514 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24489452 GTTGACTTAG
*
24489462 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
24489488 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
24489514 G
1 G
24489515 ATCGAATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:24490408 original size:26 final size:26
Alignment explanation
Indices: 24490372--24490421 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
24490362 TTGACTTAGG
*
24490372 CATATGGAGTTCATCCCCAGTCTAAT
1 CATACGGAGTTCATCCCCAGTCTAAT
* *
24490398 CATACGGAGTTCATTCCTAGTCTA
1 CATACGGAGTTCATCCCCAGTCTA
24490422 TGATCAGACC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAT
Found at i:24491006 original size:329 final size:329
Alignment explanation
Indices: 24490398--24491016 Score: 816
Period size: 329 Copynumber: 1.9 Consensus size: 329
24490388 CCAGTCTAAT
* * * *
24490398 CATACGGAGTTCATTCCTAGTCTATGATCAGACCGAATTGACGGTTGCCGTAGCAGGATCGGCAG
1 CATACGAAGTTCATTCCTAGTCTAAGATCAGACCAAATTGACGGTTGCCGCAGCAGGATCGGCAG
* *
24490463 CACGCAGGGGGGACCAGGCCAATCCCCAGCTTACGCATTCCGCCTTTCCGGTCGACTGAGCACCC
66 CACGCAGGGGGGACCAGGCCAATCCCCAGCTTACGCATTCCGCCTGTCCGATCGACTGAGCACCC
* ** * * * *
24490528 GTATGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGCCGCA
131 GCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCTAGCAGCA
* *
24490593 CCAAGGGTTGTGGCAGCAGGACCCGATAGCGGGATCGACAGTACGCAGAAGGGGACCGGGCTAAT
196 CCAAGGGTTGTGGCAGCAGGACCCGATAGCAGGATCGACAGCACGCAGAAGGGGACCGGGCTAAT
*
24490658 CCCCAATGGCGCTTTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
261 CCCCAATGGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
24490723 TAGG
326 TAGG
* * *
24490727 CATACGAAGTTCATTCCTAGTCTAAGATC-GAATCAAATTGAGGGTTGCGGCAGCAGGATCGGCA
1 CATACGAAGTTCATTCCTAGTCTAAGATCAG-ACCAAATTGACGGTTGCCGCAGCAGGATCGGCA
* * * ** * * *
24490791 GCACGCAGGGGGGATCAGGCCGATCCTCAGCTTGTGCATTCTGCCTGTCCGATCGGCTGAGCGCC
65 GCACGCAGGGGGGACCAGGCCAATCCCCAGCTTACGCATTCCGCCTGTCCGATCGACTGAGCACC
**
24490856 CGCACACTTGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAG-CCTCAGTCA
130 CGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCT-AG-CA
* ** * *
24490920 G-ACCGAGGGTTGTGGCAGCAGGACTGGCA-A-CAGGATCGACAGCACGCAGAGGGGGATCGGGC
193 GCACCAAGGGTTGTGGCAGCAGGACCCG-ATAGCAGGATCGACAGCACGCAGAAGGGGACCGGGC
* * * *
24490982 TTATCCTCGACTTGCGCATTATGCCTCTCCGACCG
257 TAATCC-CCAATGGCGCATTATGCCTCTCCGACCG
24491017 GCCTCTCCGG
Statistics
Matches: 247, Mismatches: 38, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
328 37 0.15
329 207 0.84
330 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.21
Consensus pattern (329 bp):
CATACGAAGTTCATTCCTAGTCTAAGATCAGACCAAATTGACGGTTGCCGCAGCAGGATCGGCAG
CACGCAGGGGGGACCAGGCCAATCCCCAGCTTACGCATTCCGCCTGTCCGATCGACTGAGCACCC
GCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCTAGCAGCA
CCAAGGGTTGTGGCAGCAGGACCCGATAGCAGGATCGACAGCACGCAGAAGGGGACCGGGCTAAT
CCCCAATGGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
TAGG
Found at i:24491096 original size:26 final size:26
Alignment explanation
Indices: 24491056--24491125 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
24491046 CTCGTTTCGT
24491056 GGGTTCATTCCCAGTCTAAGCATACG
1 GGGTTCATTCCCAGTCTAAGCATACG
*
24491082 GGGTTCATTCTCAGTCTAAGCATACG
1 GGGTTCATTCCCAGTCTAAGCATACG
*
24491108 GAGTTCATTCCCAGTCTA
1 GGGTTCATTCCCAGTCTA
24491126 CCAAATTTGT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (26 bp):
GGGTTCATTCCCAGTCTAAGCATACG
Found at i:24492280 original size:26 final size:26
Alignment explanation
Indices: 24492244--24492296 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24492234 GTTGACTTAG
24492244 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24492270 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24492296 G
1 G
24492297 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24492978 original size:26 final size:26
Alignment explanation
Indices: 24492946--24492998 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24492936 GTTGACTTAG
24492946 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
24492972 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24492998 G
1 G
24492999 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24493118 original size:355 final size:343
Alignment explanation
Indices: 24492617--24493300 Score: 785
Period size: 355 Copynumber: 2.0 Consensus size: 343
24492607 GTTGACTTAG
* * **
24492617 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
** *
24492682 GCACGTAGAGGGGACCGAGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCC
66 GCACACAGAGGGGACAGAGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCC
* * * * * * * *
24492747 CGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCTACAACTGG
131 CACACGCCCATTTCGTGGGTTGGCTTAGACATACGGAGCTCATTCCACGTCTAAGCCACAACCGA
* *
24492812 ATCGAGGGTTGTGGCAGTAGGACCGACAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCTAAT
196 ACCGAGGG-T-T----GT--G---G-CAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCCAAT
** * * * *
24492877 CCCCGACTTGCGCATTATGCCCCTCCGACTGGCTGAGCGCGCATACGCTCGTTTCATGGGTTGAC
249 CCCCGACTTGCGCATTATGCCCCTCCGACCAGCTCAACGCCCACACGCTCGTTTCATGGGTTGAC
24492942 TTAGGCATACGAAGTTCATCCCCAGTCTAA
314 TTAGGCATACGAAGTTCATCCCCAGTCTAA
* * * **
24492972 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGACAGTAGGATCGGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * ** *
24493037 GCACACAGGGGGGACTAG-GTCGATCCCCGACTTGTGCATTCTGCCTCTCTGGTCAGCTGAGTGC
66 GCACACAGAGGGGAC-AGAGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGC
* * * * * *
24493101 CCACACGCCCGTTTCGTGGGTTGGCTTAGACGTATGGAGCTCATTCCATGTCTAAGCCCCACCCG
130 CCACACGCCCATTTCGTGGGTTGGCTTAGACATACGGAGCTCATTCCACGTCTAAGCCACAACCG
* * * *
24493166 AACCGATGGTTGTGGCAGCGGGATCGACAGCACGTAGAGGGGGATCGGGCCAATCCCCGGCTTGT
195 AACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCCAATCCCCGACTTGC
** * *
24493231 GCATTATGCCTTTTCGACCAGCTCAACGCCCACACGCTCGTTTCATGGGTTGACTTATGCATACG
260 GCATTATGCCCCTCCGACCAGCTCAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACG
*
24493296 GAGTT
325 AAGTT
24493301 TATTCTAGTC
Statistics
Matches: 277, Mismatches: 51, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
343 105 0.38
344 1 0.00
347 1 0.00
349 2 0.01
353 1 0.00
354 1 0.00
355 165 0.60
356 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (343 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
GCACACAGAGGGGACAGAGCCAATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGCC
CACACGCCCATTTCGTGGGTTGGCTTAGACATACGGAGCTCATTCCACGTCTAAGCCACAACCGA
ACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCCAATCCCCGACTTGCG
CATTATGCCCCTCCGACCAGCTCAACGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGA
AGTTCATCCCCAGTCTAA
Found at i:24493662 original size:26 final size:26
Alignment explanation
Indices: 24493632--24493683 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24493622 TGACTTAGGC
*
24493632 ATACGGAGTTCA-TCCACAGTCTAAGA
1 ATACGAAGTTCATTCC-CAGTCTAAGA
24493658 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
24493684 TTGGACTAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGA
Found at i:24493986 original size:368 final size:367
Alignment explanation
Indices: 24493374--24494070 Score: 952
Period size: 368 Copynumber: 1.9 Consensus size: 367
24493364 GGACTAGGCT
* * * *
24493374 GATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTT
1 GATCCCTGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCACCCGCACGTTCGTTTCGTGGGTT
24493439 GGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGG
66 GGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGG
* * * * * *
24493504 ACCGGTAAGGGGATCGATAGCACGTAGAGGGGGATCGAACTTATCCCCGGCTTGCACATTATGCC
131 ACCGATAAGGGGATCGACAGCACGCAGAGGGGGATCGAACTAATCCCCGACTTACACATTATGCC
* * *
24493569 TTTTCGACTGGCCCCTCCGGCCGACTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCAT
196 TCTCCGACTGGCCCCTCCGACCGACTGAGCGCCCGTA-GCTCATTTCATGGGTTGACTTAGGCAT
** * *
24493634 ACGGAGTTCATCCACAGTCTAAGAATACGAAGTTCATTCCCAGTCTAAGATTGGACTAGATCGAG
260 ACGGAGTTCATCCACAGTCTAAGAATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
24493699 GGTTGTGGTAGCAGGATCGACAGCATGTAAGGAGGACCGAGCC
325 GGTTGTGGTAGCAGGATCGACAGCATGTAAGGAGGACCGAGCC
*
24493742 GATCCCTGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCACCCTCACGCTT-GTTTCGTGGGT
1 GATCCCTGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCACCCGCACG-TTCGTTTCGTGGGT
*** *
24493806 TGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCTGTAGTCGGATCGAGGGTTGTGGTAGCAG
65 TGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAG
* * ** *
24493871 GACTGAT-AGCGGGATCGGCAGCACGCAGAGGGGGATCGGGCTAATCCCCGACTTACGCATTATG
130 GACCGATAAG-GGGATCGACAGCACGCAGAGGGGGATCGAACTAATCCCCGACTTACACATTATG
* * * * * * *
24493935 CCTCTCCG-GTCGGCCTCTTCGACTGGCTGAGCTCACACGT-GCTCGTTTCATGGGTTGACTTAG
194 CCTCTCCGACT-GGCCCCTCCGACCGACTGAGCGC-C-CGTAGCTCATTTCATGGGTTGACTTAG
* ** * * *
24493998 GCATACGGAGTTCATCCCCAGTCTAAGCGTATGGAGTTTATTCCCAGTCTAAGATCAGACCAGAC
256 GCATACGGAGTTCATCCACAGTCTAAGAATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGAC
24494063 CGAGGGTT
321 CGAGGGTT
24494071 ACGGCAGCAT
Statistics
Matches: 284, Mismatches: 40, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
367 3 0.01
368 275 0.97
369 3 0.01
370 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (367 bp):
GATCCCTGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGCACCCGCACGTTCGTTTCGTGGGTT
GGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGCAGG
ACCGATAAGGGGATCGACAGCACGCAGAGGGGGATCGAACTAATCCCCGACTTACACATTATGCC
TCTCCGACTGGCCCCTCCGACCGACTGAGCGCCCGTAGCTCATTTCATGGGTTGACTTAGGCATA
CGGAGTTCATCCACAGTCTAAGAATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
GTTGTGGTAGCAGGATCGACAGCATGTAAGGAGGACCGAGCC
Found at i:24494600 original size:26 final size:26
Alignment explanation
Indices: 24494570--24494622 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24494560 GTTGACTTAG
24494570 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
*
24494596 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
24494622 G
1 G
24494623 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:24494822 original size:158 final size:159
Alignment explanation
Indices: 24494596--24494939 Score: 433
Period size: 159 Copynumber: 2.2 Consensus size: 159
24494586 CCCAGTCTAA
* * * *
24494596 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGTGGCAACAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGTGGCAACAGGATCGACA
* * * * *
24494661 GCACGCA-GGGGGGACCGAGCCGAA-CCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTTAGCG
66 GCACACAGGGGGGGACCGAGCC-AATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCG
* * *
24494724 CCCGTACACTCATTTCGTGGGTTGACTTAT
130 CCCGCACACTCATTTCATGGGTTGACTTAG
* * * *
24494754 GCATATAGAGTTCATTCCCAGTCTAAGAT-GAGATCAGACCAAGGGTTGTGGCAGCAGGATCGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCAAGGGTTGTGGCAACAGGATCGAC
* * *
24494818 AGCACACAGGGGGGGACCGGGTCAATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
65 AGCACACAGGGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCG
* * *
24494883 CCCGCACGCTCGTTTTATGGGTTGACTTAG
130 CCCGCACACTCATTTCATGGGTTGACTTAG
* *
24494913 GCATACGGAGTTCATCCCCAGTCTAAG
1 GCATACAGAGTTCATTCCCAGTCTAAG
24494940 CATACAAAGT
Statistics
Matches: 158, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
157 2 0.01
158 62 0.39
159 94 0.59
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.22
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGTGGCAACAGGATCGACA
GCACACAGGGGGGGACCGAGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGC
CCGCACACTCATTTCATGGGTTGACTTAG
Found at i:24494927 original size:343 final size:343
Alignment explanation
Indices: 24494242--24495468 Score: 1164
Period size: 343 Copynumber: 3.5 Consensus size: 343
24494232 GTTGACTTAT
* * * * *** *
24494242 GCATACAGAGTTCATT-CCAATCTAAGATC-AGATCGGATCAAGGGTTGTGATGGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGATCGAGGGTTGTGGCAGCAGGATCGAC
* * ** ** * *
24494305 AGCATGCGGGGGGGACC-AGGCCGATCCCAAGCTTGCATATTCTGCCTC-TCTGGCCGGTTGAGC
65 AGCACGCAGGGGGGACCGA-GCCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GACCGGCTGAGC
* * * * * ** * ***
24494368 GCCCGCACACTCGTTTCGTGGGTTGGGTTAGGCATACGGAGTACATTCCACATCTAAGCCCCGGT
128 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCACCAAC
** * ** * *
24494433 CAGACTGAGGGTTGTGGTAGCAGGACCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCAGG-C
193 CAGACCAAGGGTTGT-G-A-CA-G--C-G--G-A--ATCGACAGCACACAAAGGGGGACCGGGTC
* * * * * *
24494497 TGATCCCCAGCTTACGCATTATGCCTCTTC-AGTCGGCTGAGCGCACGCACGCTTGTTTCATGGG
246 -AATCCCCAGCTTGCGCATTATGCCTCTTCGA-CCGGCTGAGCGCCCGCACGCTCGTTTTATGGG
24494561 TTGACTTAGGCATACGGAGTTCATACCCAGTCTAA
309 TTGACTTAGGCATACGGAGTTCATACCCAGTCTAA
*
24494596 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGTGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
24494661 GCACGCAGGGGGGACCGAGCCGAACCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTTAGCGCC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCC
* * * * ** ** *
24494726 CGTACACTCATTTCGTGGGTTGACTTATGCATATAGAGTTCATTCCCA-GTCTAAG-ATGAGATC
131 CGTACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATT-CCATGTCTAAGCACCA-ACC
* * **
24494789 AGACCAAGGGTTGTGGCAGCAGG-ATCGATAGCACACAGGGGGGGACCGGGTCAATCCCCAGCTT
194 AGACCAAGGGTTGTGACAGC-GGAATCGACAGCACACAAAGGGGGACCGGGTCAATCCCCAGCTT
* *
24494853 GCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATA
258 GCGCATTATGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATA
*
24494918 CGGAGTTCATCCCCAGTCTAA
323 CGGAGTTCATACCCAGTCTAA
** * * * *** * * *
24494939 GCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGA-CTGAGGGTTGCGATGGTAGGATCAAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATC-GAGGGTTGTGGCAGCAGGATCGAC
* * * * *
24495003 AGCACGCAGGGGGGATCGAGCTGATCCTCGGCTTACGCATTCTGCCTC-TCTGACCGGCTGAGAG
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GACCGGCTGAGCG
* * * * * ** * *
24495067 CCCATACGCCCGTTTCGTTGGTTGGCTTAGGCATAGGGAGCACATTCCATGTTTAAGCCCCAACC
129 CCCGTACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCACCAACC
* * * * **
24495132 AGACCGAGGGTTGTGACAGCGGAATCGACAGCTCGCAAAGGGGGACCGGGTCGATCCCTGGCTTG
194 AGACCAAGGGTTGTGACAGCGGAATCGACAGCACACAAAGGGGGACCGGGTCAATCCCCAGCTTG
* * * *
24495197 CGCATTATGCCTCTTCGACCGGTTCAGCGCCCGCACACTCGTTTTATGGGTTGACTTATGCATAC
259 CGCATTATGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATAC
* *
24495262 GGAGTTCATTCCTAGTCTAA
324 GGAGTTCATACCCAGTCTAA
* * * * *
24495282 GCATACGGAGTTCATTCCCAATCTAAGAT-TAGACAGGATTGAGGGTTGTGGCAGCAAGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGATCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
24495346 AGTACGCAGGGGGGACCGAGTCGATCTCCAGCTTGCGAATTCTGCCTCTTCGACCGGCTGAGCGC
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGC
* * *
24495411 CCGCATGCTCGTTTTGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCA
130 CCGTACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCA
24495469 TATGGAGCCC
Statistics
Matches: 710, Mismatches: 147, Indels: 43
0.79 0.16 0.05
Matches are distributed among these distances:
342 8 0.01
343 526 0.74
344 5 0.01
347 1 0.00
349 2 0.00
351 1 0.00
352 2 0.00
354 16 0.02
355 142 0.20
356 7 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (343 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCC
CGTACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCACCAACCAG
ACCAAGGGTTGTGACAGCGGAATCGACAGCACACAAAGGGGGACCGGGTCAATCCCCAGCTTGCG
CATTATGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGG
AGTTCATACCCAGTCTAA
Found at i:24495292 original size:26 final size:26
Alignment explanation
Indices: 24495256--24495308 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24495246 GTTGACTTAT
* *
24495256 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
24495282 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
24495308 G
1 G
24495309 ATTAGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:24495447 original size:184 final size:185
Alignment explanation
Indices: 24495137--24495495 Score: 494
Period size: 184 Copynumber: 1.9 Consensus size: 185
24495127 CAACCAGACC
* * * *
24495137 GAGGGTTGTGACAGCGGAATCGACAGCTCGCAAAGGGGGACCGGGTCGATCCCTGGCTTGCGCAT
1 GAGGGTTGTGACAGCAGAATCGACAGCTCGCAAAGGGGGACCGAGTCGATCCCTAGCTTGCGAAT
* *
24495202 TATGCCTCTTCGACCGGTTCAGCGCCCGCACACTCGTTTTATGGGTTGACTTATGCATACGGAGT
66 TATGCCTCTTCGACCGGCTCAGCGCCCGCACACTCGTTTTATGGGTTGACTTAAGCATACGGAGT
**
24495267 TCATTCC-TAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTAGACAGGATT
131 TCATTCCAT-GTCTAAGCATACGGAGCCCATTCCCAATCTAAGATTAGACAGGATT
* *
24495322 GAGGGTTGTGGCAGCA-AGATCGACAG-TACGC-AGGGGGGACCGAGTCGATCTCC-AGCTTGCG
1 GAGGGTTGTGACAGCAGA-ATCGACAGCT-CGCAAAGGGGGACCGAGTCGATC-CCTAGCTTGCG
* * ** * *
24495383 AATTCTGCCTCTTCGACCGGCTGAGCGCCCGCATGCTCGTTTTGTGGGTTGGCTTAAGCATACGG
63 AATTATGCCTCTTCGACCGGCTCAGCGCCCGCACACTCGTTTTATGGGTTGACTTAAGCATACGG
*
24495448 AGTTCATTCCATGTCTAAGCATATGGAGCCCATTCCCAATCTAAGATT
128 AGTTCATTCCATGTCTAAGCATACGGAGCCCATTCCCAATCTAAGATT
24495496 TTGAGCCATG
Statistics
Matches: 153, Mismatches: 17, Indels: 9
0.85 0.09 0.05
Matches are distributed among these distances:
184 125 0.82
185 28 0.18
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (185 bp):
GAGGGTTGTGACAGCAGAATCGACAGCTCGCAAAGGGGGACCGAGTCGATCCCTAGCTTGCGAAT
TATGCCTCTTCGACCGGCTCAGCGCCCGCACACTCGTTTTATGGGTTGACTTAAGCATACGGAGT
TCATTCCATGTCTAAGCATACGGAGCCCATTCCCAATCTAAGATTAGACAGGATT
Found at i:24495861 original size:21 final size:21
Alignment explanation
Indices: 24495835--24495875 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
24495825 TTTGGATGAA
24495835 TTTTTTGTGCATGCCAACAAT
1 TTTTTTGTGCATGCCAACAAT
24495856 TTTTTTGTGCATGCCAACAA
1 TTTTTTGTGCATGCCAACAA
24495876 AACCTTTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.41
Consensus pattern (21 bp):
TTTTTTGTGCATGCCAACAAT
Found at i:24496182 original size:26 final size:26
Alignment explanation
Indices: 24496145--24496197 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24496135 GTTGACCTAG
*
24496145 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
24496171 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
24496197 G
1 G
24496198 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:24496488 original size:26 final size:26
Alignment explanation
Indices: 24496441--24496493 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24496431 GTTGACTTAG
* *
24496441 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCACAGTCTAA
* *
24496467 GCATACGGAGTTAATTCACAGTTTAA
1 GCATACGGAGTTAATCCACAGTCTAA
24496493 G
1 G
24496494 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATCCACAGTCTAA
Found at i:24496620 original size:296 final size:296
Alignment explanation
Indices: 24496115--24496666 Score: 784
Period size: 296 Copynumber: 1.9 Consensus size: 296
24496105 CGATTGAGCC
*
24496115 CCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGAA
1 CCCGCACGCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGAA
* * ** * * **
24496180 GTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGTAGTAGGATCGGTAGCACACAGG
66 GTTAATTCACAGTCTAAGATCGAATCGGATCGAAAGTTACGGTAGCAGGATCGACAGCACACAGG
* * * *
24496245 GGGGATCGGATCGATCCCTGGCTTGCACATTCTACCTATCTGGTCGGCTGAGCGCCTGCACGCTC
131 GGGGATCGGACCGATCCCTGACTTGCACATTCTACCTATCTGGCCGGCTGAGCGCCCGCACGCTC
* *
24496310 GTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCATGTATAAGCCCCAGCCGAACTGATCCC
196 GTTTCGTGGGTTGGCTTAGGCATACAAAGTACATTCCACGTATAAGCCCCAGCCGAACTGATCCC
24496375 TGGCTTGCGCATTATGCCTCTCCAGCCAGCTGAACG
261 TGGCTTGCGCATTATGCCTCTCCAGCCAGCTGAACG
* * * * *
24496411 CCCGTACGCTCATTTCGTGTGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
1 CCCGCACGCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGAA
* * * *
24496476 GTTAATTCACAGTTTAAGATCGGATCGGATTGAAAGTTACGGTAGCAGGATCGACAGCACGCAGG
66 GTTAATTCACAGTCTAAGATCGAATCGGATCGAAAGTTACGGTAGCAGGATCGACAGCACACAGG
* * * * * *
24496541 GGGGA-CTGGGCCGATCCCTGACTTGCCCATTCTGCCTCTCTGGCCGGTTGAGTGCCCGCACGCT
131 GGGGATC-GGACCGATCCCTGACTTGCACATTCTACCTATCTGGCCGGCTGAGCGCCCGCACGCT
* *
24496605 CGTTTCG-GTGGTTGGCTTAGGCATACAAAGTACATTCGACGTCTAAGCCCCAGCCGAACTGA
195 CGTTTCGTG-GGTTGGCTTAGGCATACAAAGTACATTCCACGTATAAGCCCCAGCCGAACTGA
24496667 GGGTTGTGGC
Statistics
Matches: 222, Mismatches: 32, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
295 2 0.01
296 220 0.99
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.24
Consensus pattern (296 bp):
CCCGCACGCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGAA
GTTAATTCACAGTCTAAGATCGAATCGGATCGAAAGTTACGGTAGCAGGATCGACAGCACACAGG
GGGGATCGGACCGATCCCTGACTTGCACATTCTACCTATCTGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACAAAGTACATTCCACGTATAAGCCCCAGCCGAACTGATCCC
TGGCTTGCGCATTATGCCTCTCCAGCCAGCTGAACG
Found at i:24497152 original size:158 final size:160
Alignment explanation
Indices: 24496960--24497324 Score: 395
Period size: 159 Copynumber: 2.3 Consensus size: 160
24496950 CCGTACGCCT
* * * * *
24496960 ATTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-CCGGACTGAGGG
1 ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGG
* * * *
24497024 TTGTGGCAGCGGGA-CTGGCAGCACACAGA-AGGGGAC-GGGCCGATCCCCGGATTGCGCATTAT
66 TTGCGGCAGCAGGATC-GACAGCACACA-ACAGGGGACTGGGCCAATCCCCGGATTGCGCATTAT
* *
24497086 GCCTCTTCG-GCTGGCTCAGCT-CCAGCACGCTC
129 GCCTCTCCGACCT-GCTCAG-TGCCAGCACGCTC
* * * *
24497118 ATTTCATGCGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTGAGG
1 ATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACTGAGG
* ** * * * * *
24497181 GTTGCGGCAGTAGGATCGACAGCACGTAACGGGGGACTGGGTCAATCCCCGGCTTGTGCATTCTG
65 GTTGCGGCAGCAGGATCGACAGCACACAACAGGGGACTGGGCCAATCCCCGGATTGCGCATTATG
* *
24497246 CCTCTCCGACCTGCTGAGTGCCCGCACGCTC
130 CCTCTCCGACCTGCTCAGTGCCAGCACGCTC
*
24497277 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
24497325 TACGGAGCTC
Statistics
Matches: 169, Mismatches: 29, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
157 4 0.02
158 76 0.45
159 86 0.51
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (160 bp):
ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACTGAGGG
TTGCGGCAGCAGGATCGACAGCACACAACAGGGGACTGGGCCAATCCCCGGATTGCGCATTATGC
CTCTCCGACCTGCTCAGTGCCAGCACGCTC
Found at i:24497300 original size:159 final size:156
Alignment explanation
Indices: 24496825--24497322 Score: 434
Period size: 158 Copynumber: 3.1 Consensus size: 156
24496815 AGTCTAAGCA
* * * *
24496825 ACAGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGACAGCA
1 ACAGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGTAGGATCGACAGCA
* * ** * * * * * * *
24496889 TGTAGGGGGGACCAAGTTGATCTCTGGCTTGTGCATTTTGCCTCTCCGATC-GATTGAGCACCCG
65 CGTAAGGGGGA-CGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCTG-CTGAG-TCCCG
* *
24496953 TACGC-CTATTTCATGGGTTGGCTTAGGCAT
127 CACGCTC-ATTTCATGGGTTGACTTAGGCAT
** * ** * ** *
24496983 AGGGAGCTCATTCCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGCGGGA-CTGGCAGC
1 ACAGAGTTCATTCCATGTCTAAG-ATCAGACCGGACTGAGGGTTGCGGCAGTAGGATC-GACAGC
** * * * * * * * *
24497046 ACACAGAAGGGGACGGGCCGATCCCCGGATTGCGCATTATGCCTCTTCG-GCTGGCTCAGCTCCA
64 ACGTA-AGGGGGACGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCT-GCTGAG-TCCC
* *
24497110 GCACGCTCATTTCATGCGTTGACTTATGCAT
126 GCACGCTCATTTCATGGGTTGACTTAGGCAT
*
24497141 ACAGAGTTCATTCCCA-GTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCA
1 ACAGAGTTCATT-CCATGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGTAGGATCGACAGCA
* *
24497205 CGTAACGGGGGACTGGGTCAATCCCCGGCTTGTGCATTCTGCCTCTCCGACCTGCTGAGTGCCCG
65 CGTAA-GGGGGAC-GGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCTGCTGAGT-CCCG
*
24497270 CACGCTCATTTCGTGGGTTGACTTAGGCAT
127 CACGCTCATTTCATGGGTTGACTTAGGCAT
*
24497300 ACGGAGTTCATTCCATGTCTAAG
1 ACAGAGTTCATTCCATGTCTAAG
24497323 CATACGGAGC
Statistics
Matches: 262, Mismatches: 63, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
157 9 0.03
158 156 0.60
159 95 0.36
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
ACAGAGTTCATTCCATGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGTAGGATCGACAGCAC
GTAAGGGGGACGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCTGCTGAGTCCCGCACG
CTCATTTCATGGGTTGACTTAGGCAT
Found at i:24499016 original size:329 final size:329
Alignment explanation
Indices: 24498411--24499025 Score: 829
Period size: 329 Copynumber: 1.9 Consensus size: 329
24498401 CCAGTCTAAG
* * * ** * *
24498411 CATACAAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGTAGGATCGGCAG
1 CATACAAAGTTCATCCCCAATCTAAGATCAGACCGGATCGAGGGTTACGACAGCAGGATCGACAG
* * * *
24498476 CACGCATGGGGGATCGAGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTAAGCGCCC
66 CACACATGGGGAATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTAAGCGCCC
* * * * *
24498541 GCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCTCGTCTAAGCCCTAGCCGAA
131 GCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGCCGAA
* *
24498606 CTAAGGGTTGTGGCAGTAAGACCGACAGCGAGATCGGTAGCACACAGAGGGGGACCGGGCTAATC
196 CTAAGGGTTGTGGCAGCAAGACCGACAGCGAGATCGGCAGCACACAGAGGGGGACCGGGCTAATC
*
24498671 CCCAGCTTGCGCATTATGCCTCTCCGGGCGGCTGAATGCCCGCATGCTCGTTTTGTGGGTTGACT
261 CCCAGCTTACGCATTATGCCTCTCCGGGCGGCTGAATGCCCGCATGCTCGTTTTGTGGGTTGACT
24498736 TAGA
326 TAGA
* ** *
24498740 CATACAGAGTTCATCCCCAATCTAAGATTGGACCGGATCGAGGGTTGCGACAGCAGGATCGACAG
1 CATACAAAGTTCATCCCCAATCTAAGATCAGACCGGATCGAGGGTTACGACAGCAGGATCGACAG
* * ** *
24498805 CACACA-GGGAGAATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGACCGGTTGAA-TGC
66 CACACATGGG-GAATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACT-AAGCGC
* *
24498868 CTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCG
129 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGCCG
* ** * * * * *
24498933 AACTAAGGGTTGTGGCAGCAAGATCGGTAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGTTGA
194 AACTAAGGGTTGTGGCAGCAAGACCGACAGCGAGATCGGCAGCACACAGAGGGGGACCGGGCTAA
***
24498998 TCCTTGGCTTACGCATTATGCCTCTCCG
259 TCCCCAGCTTACGCATTATGCCTCTCCG
24499026 ACCTGCCTCT
Statistics
Matches: 243, Mismatches: 41, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
328 3 0.01
329 238 0.98
330 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (329 bp):
CATACAAAGTTCATCCCCAATCTAAGATCAGACCGGATCGAGGGTTACGACAGCAGGATCGACAG
CACACATGGGGAATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGACTAAGCGCCC
GCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGCCGAA
CTAAGGGTTGTGGCAGCAAGACCGACAGCGAGATCGGCAGCACACAGAGGGGGACCGGGCTAATC
CCCAGCTTACGCATTATGCCTCTCCGGGCGGCTGAATGCCCGCATGCTCGTTTTGTGGGTTGACT
TAGA
Found at i:24499111 original size:26 final size:26
Alignment explanation
Indices: 24499081--24499133 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24499071 GTTGACTTAG
24499081 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
**
24499107 GCATACGGAGTTCATTTCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
24499133 G
1 G
24499134 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:24500551 original size:26 final size:26
Alignment explanation
Indices: 24500521--24500571 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
24500511 TTGACTTAGT
24500521 CATACAGAGTTCATCCCCAATCTAAG
1 CATACAGAGTTCATCCCCAATCTAAG
* * *
24500547 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAATCTAA
24500572 TATCAGATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAATCTAAG
Found at i:24500806 original size:368 final size:355
Alignment explanation
Indices: 24500111--24500934 Score: 974
Period size: 368 Copynumber: 2.3 Consensus size: 355
24500101 CCTCTCTGGT
* * * * * *
24500111 CGGCTGAACGCCTGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCACCAGCCTA
1 CGGCTGAGCACCTGCACGCTCATTTCATGGGTTGACTTAGGCATACG-AGTTCATCCCCAGTCTA
* * *
24500176 AGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGATAGTAGGATCGGT
65 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTACGACAGTAGGATCGGT
*** ** * * * * * *
24500241 AGCATGTTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTTTCTGGCCGGTTGAGCA
130 AGCATCACAGAAGGGACCGAGCCGATCCCCGACTTGCGCATTCTACCTTTCTGGCCAGTTGAGCA
24500306 CCCGCACACTTGTTTCATGGGTTACCTTAAGCAGACGGAGTACATTCCACATCTAAGCCCCAGTC
195 CCCGCACACTTGTTTCATGGGTTACCTTAAGCAGACGGAGTACATTCCACATCTAAGCCCCAGTC
* * * * *
24500371 AGACCGAGGGTTGTGGTAGCAGGACTGACAGCGAGATCGCCAGCACGCAGAGGGGGATCGGGCTG
260 AGACCAAGGGTTGTGGCAGCAGGACTGACAGCGAGATCGACAGCACACAGAGGGGGACCGGGCTG
* *
24500436 ATCCCCGGCTTGCGCATTATGCCTCTTCGACCGACCTCTC
325 ATCCCCGGCTTACGCATTATGCCT-AT---CCGA-----C
* *
24500476 CGGCCAATTGAGCA-TTCGCACGCTCATTTCATGGGTTGACTTAGTCATACAGAGTTCATCCCCA
1 CGG-C---TGAGCACCT-GCACGCTCATTTCATGGGTTGACTTAGGCATAC-GAGTTCATCCCCA
* * *
24500540 ATCTAAGCATACGGAGTTCATTCCCAGTCTAATATCAGATCGAATCGAGGGTTACGACAGTAGGA
60 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTACGACAGTAGGA
* *
24500605 TCAGG-AGCA-CACAGAAGGGACCGAGTCGATCCCCGACTTGTGCATTCTACCTCTT-TGGCCAG
125 TC-GGTAGCATCACAGAAGGGACCGAGCCGATCCCCGACTTGCGCATTCTACCT-TTCTGGCCAG
* ** * *
24500667 TTGAGCCCCCGCA-AGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAG
188 TTGAGCACCCGCACA-CTTGTTTCATGGGTTACCTTAAGCAGACGGAGTACATTCCACATCTAAG
* * * *
24500731 CCCTAGTCGGACCAAGGGTTGTGGCAGCAGGACTGGCAGCGGGATCGACAGCACACAGAGGGGGA
252 CCCCAGTCAGACCAAGGGTTGTGGCAGCAGGACTGACAGCGAGATCGACAGCACACAGAGGGGGA
* * *
24500796 CCGTGCTGATCCCTGGCTTATGCATTATGCCTATCCGAC
317 CCGGGCTGATCCCCGGCTTACGCATTATGCCTATCCGAC
* * *
24500835 CGGCTGAGCACCTGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCACCCCCAGTCTA
1 CGGCTGAGCACCTGCACGCTCATTTCATGGGTTGACTTAGGCATAC-GAGTTCATCCCCAGTCTA
* *
24500900 AGCATACAGAGTTCATTCCTAGTCTAAGATCAGAC
65 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
24500935 AGGACCGAGG
Statistics
Matches: 392, Mismatches: 57, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
355 83 0.21
356 1 0.00
358 1 0.00
359 4 0.01
364 4 0.01
365 3 0.01
366 1 0.00
367 2 0.01
368 179 0.46
369 111 0.28
370 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.24
Consensus pattern (355 bp):
CGGCTGAGCACCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGAGTTCATCCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTACGACAGTAGGATCGGTA
GCATCACAGAAGGGACCGAGCCGATCCCCGACTTGCGCATTCTACCTTTCTGGCCAGTTGAGCAC
CCGCACACTTGTTTCATGGGTTACCTTAAGCAGACGGAGTACATTCCACATCTAAGCCCCAGTCA
GACCAAGGGTTGTGGCAGCAGGACTGACAGCGAGATCGACAGCACACAGAGGGGGACCGGGCTGA
TCCCCGGCTTACGCATTATGCCTATCCGAC
Found at i:24501077 original size:355 final size:357
Alignment explanation
Indices: 24500111--24501242 Score: 1081
Period size: 355 Copynumber: 3.2 Consensus size: 357
24500101 CCTCTCTGGT
* * * * * * *
24500111 CGGCTGAACGCCTGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCACCAGCCTA
1 CGGCTGAGCACCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * **
24500176 AGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGATAGTAGGATCGGT
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGATCGAGGGTTACGACAGTAGGATCGAC
*
24500241 AGCATGTTAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCT-TTCTGGCCGGTTGAGC
130 AGCATG-CAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTC-GGCCGGTTGAGC
* ** * * *
24500305 ACCCGCACACTTGTTTCATGGGTTACCTTAAGCAGACGGAGTACATTCCACATCTAAGCCCCAGT
193 ACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCTAGT
* * * * *
24500370 CAGACCGAGGGTTGTGGTAGCAGGACTGACAGCGAGATCGCCAGCACGCAGAGGGGGATCGGGCT
258 CAGACCAAGGGTTGTGGCAGCAGGACTGACAGCGAGATCGACAGCACACAGAGGGGGACCGGGCT
* *
24500435 GATCCCCGGCTTGCGCATTATGCCTCTTCGACCGACCTCTC
323 GATCCCCGGCTTACGCATTATGCCTCAT--ACCGA---C-C
* * *
24500476 CGGCCAATTGAGCA-TTCGCACGCTCATTTCATGGGTTGACTTAGTCATACAGAGTTCATCCCCA
1 CGG-C---TGAGCACCT-GCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
* * *
24500540 ATCTAAGCATACGGAGTTCATTCCCAGTCTAATATCAGATCGAATCGAGGGTTACGACAGTAGGA
61 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGATCGAGGGTTACGACAGTAGGA
* ** ** * * * * * * * * *
24500605 TC-AGGAGCACACAGAAGGGACCGAGTCGATCCCCGACTTGTGCATTCTACCTCTTTGGCCAGTT
125 TCGA-CAGCATGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGTT
* *
24500669 GAGCCCCCGCAAGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCC
189 GAGCACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCC
* * *
24500734 TAGTCGGACCAAGGGTTGTGGCAGCAGGACTGGCAGCGGGATCGACAGCACACAGAGGGGGACCG
254 TAGTCAGACCAAGGGTTGTGGCAGCAGGACTGACAGCGAGATCGACAGCACACAGAGGGGGACCG
* * *
24500799 TGCTGATCCCTGGCTTATGCATTATGCCT-AT-CCGA-C
319 GGCTGATCCCCGGCTTACGCATTATGCCTCATACCGACC
* * *
24500835 CGGCTGAGCACCTGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCACCCCCAGTCTA
1 CGGCTGAGCACCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * * * *
24500900 AGCATACAGAGTTCATTCCTAGTCTAAGATCAGACAGGACCGAGGTTTGCGGCAGCAGGATCGAC
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGATCGAGGGTTACGACAGTAGGATCGAC
* * * * *
24500965 AGCATGCAGGGGGGATCGGGCCGATCCTCGGCTTACACATTTTGCCTCTTCGGCCGGCTGAGCGC
130 AGCATGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGTTGAGCAC
* ** * **
24501030 CCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCT--TC
195 CCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCACATCTAAGCCCTAGT-
* * * * * * ** *
24501092 CGGATCGAGGATTGTGGCAG-TGG---GAC--CG-G-T----AGCACTCAGAGGGGGACCGAACC
258 CAGACCAAGGGTTGTGGCAGCAGGACTGACAGCGAGATCGACAGCACACAGAGGGGGACCGGGCT
* * * *
24501145 GATCCTC-GCTTGCGCATTATGCCTC-T-TCGA-T
323 GATCCCCGGCTTACGCATTATGCCTCATACCGACC
* * * * * *
24501176 CGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTA
1 CGGCTGAGCACCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
24501241 AG
66 AG
24501243 ATCGGATCTG
Statistics
Matches: 637, Mismatches: 117, Indels: 50
0.79 0.15 0.06
Matches are distributed among these distances:
341 79 0.12
342 24 0.04
346 1 0.00
347 1 0.00
348 2 0.00
350 2 0.00
353 3 0.00
354 18 0.03
355 201 0.32
356 3 0.00
358 1 0.00
359 4 0.01
364 4 0.01
365 3 0.00
366 1 0.00
367 1 0.00
368 178 0.28
369 111 0.17
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (357 bp):
CGGCTGAGCACCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGATCGAGGGTTACGACAGTAGGATCGACA
GCATGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGTTGAGCACC
CGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCTAGTCAG
ACCAAGGGTTGTGGCAGCAGGACTGACAGCGAGATCGACAGCACACAGAGGGGGACCGGGCTGAT
CCCCGGCTTACGCATTATGCCTCATACCGACC
Found at i:24501716 original size:26 final size:26
Alignment explanation
Indices: 24501686--24501738 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24501676 GTTGACTTTG
24501686 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
24501712 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24501738 G
1 G
24501739 ATGGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24502444 original size:26 final size:26
Alignment explanation
Indices: 24502408--24502460 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24502398 GTTGACTTAG
*
24502408 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24502434 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24502460 G
1 G
24502461 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24502638 original size:368 final size:364
Alignment explanation
Indices: 24501634--24503371 Score: 1666
Period size: 368 Copynumber: 4.8 Consensus size: 364
24501624 TTGCGCATCC
* * * * * * *
24501634 TGCCTCTCTAGCCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTTGGCATACGAAGTTC
1 TGCCACTCCAGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
24501699 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGGGACCAGATTGAGGGTTGCGAC
66 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGCGAC
* * * * * *
24501764 TGCAGGATCAGTAGAACGCAAGAGGG-ATCAGGCCGATCCCC-AGCTTGTGCATTCTACCTCTCC
131 AGCAGGATCAGCAGCACGC-AGGGGGAACCAGG-CGATCCCCGA-CTTGTGCATTCTGCCTCTCC
* ** * * * * * *
24501827 GACCGATTGAGCGCCCGCACACTTGTTTCGTCGGTTGG-TTA-GCATACGGAGTACATTCCATGT
193 GGCCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGT
* * * * * *
24501890 CTAAGCCCCAGCCAGACCGAAGGTTGTGGTAGCAGGACCGACAACGGGATCGACAGCATGTAGAG
258 CTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACTGGCAACAGGATCGACAGCATGAAGAG
*
24501955 GGGGATCAGGCTGATCCCCGACTTGCGTATTATGCCTCT-C-
323 GGGGATCAGGCTGATCCCCGACTTGCGCATTATGCCTCTCCG
* * ** * *
24501995 T---AGT-C-G--A-CTGAGTGCCTACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC
1 TGCCACTCCAGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* ** * * *
24502052 ATCCCCAGTCTAACCATATAGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGAC
66 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGCGAC
* * * **
24502117 AGCAGGATC-GACAGCACGCAGGGGGGGACCAAGCTAATCCCCGACTTGCACATTCTGCCTCTCC
131 AGCAGGATCAG-CAGCACGCA-GGGGGAACCAGGC-GATCCCCGACTTGTGCATTCTGCCTCTCC
* ** *
24502181 GGTCGGCTGAGTGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGT
193 GGCCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGT
** ** * * *
24502246 CTAAGCCCCAGTTGGATTGAGGGTTGTGGCAGCAGGACTGGCAGA-AGGATCGGCAACATGAAGA
258 CTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACTGGCA-ACAGGATCGACAGCATGAAGA
** ** * * *
24502310 GGGGGATCAGATTGATCCTTGGCTTGCGCATTATGCCTTTTCG
322 GGGGGATCAGGCTGATCCCCGACTTGCGCATTATGCCTCTCCG
* *
24502353 ATTGACCACTCCAGCCAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAG
1 --TG-CCACTCCAGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
*
24502418 TTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGC
63 TTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGC
* * * * *
24502483 GGCAGCAAGATCGGTAGCATGCAGGGGGAACCAGGCGAATCCCCGACTTGTGCATTCTGCCTCTC
128 GACAGCAGGATCAGCAGCACGCAGGGGGAACCAGGCG-ATCCCCGACTTGTGCATTCTGCCTCTC
* * * * * * * ** *
24502548 TGGTCGGCTGAGCACCCACACGTTCATTTTGTGGGCTGACTTAGGCATACATAGTATATTCCACG
192 CGGCCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACG
*** * * * *
24502613 TCTAAGCCCCAGCCGGACCGAGGGTTGCAATAGCAGGACTAGCAACGGGATCGATAGCA-CACAG
257 TCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACTGGCAACAGGATCGACAGCATGA-AG
* * * *
24502677 AGAGGGACCGGGCTGATCCCCGACTTGCGTATTATGCCTCTCCG
321 AGGGGGATCAGGCTGATCCCCGACTTGCGCATTATGCCTCTCCG
* ** * * * * * *
24502721 ATCGGGCTTTCCGGTC-GACTGAGCGCCCACACGCTCATTTCGTGGATTGTCTTAGGCATACGGA
1 -T--GCCACTCCAGCCAG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
24502785 GTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTG
62 GTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTG
* * * * * * * **
24502850 CGGCAGCAGGATCAACAGCATGCAGGGGAGATCGAGCCGATCCTCGACTTACGCATTCTGCCTCT
127 CGACAGCAGGATCAGCAGCACGCAGGGG-GAACCAGGCGATCCCCGACTTGTGCATTCTGCCTCT
* ** ** * * *
24502915 CAGGCCGGCTGAGTGCCCGTATGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTACATTCCAC
191 CCGGCCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCAC
* ** * * * ** * *
24502980 ATCTAAGCCATAGCTGGACCGAGGGTTTTGG-AGCAGGACTGGCAGTCA-GATCGGTAGCACGTA
256 GTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACTGGCA-ACAGGATCGACAGCATGAA
* * * * *
24503043 GATGGGGATCGGGCTGATCCCCGGCATGGGCATTATGCCTCTCCG
320 GAGGGGGATCAGGCTGATCCCCGACTTGCGCATTATGCCTCTCCG
* ** ** * *
24503088 -GCCTCTCTGGCTGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
1 TGCCACTCCAGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * **
24503152 ATCGCCAGTCTAAGCATACGGAGTCCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGAC
66 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGCGAC
* * * * * *
24503217 AGCAGGTTCAGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTT-TCGCATTCTACCTCTCCA
131 AGCAGGATCAGCAGCACGCAGGGGGAACCAGG-CGATCCCCGACTTGT-GCATTCTGCCTCTCCG
* * * * * * *
24503281 GCCGACTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
194 GCCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTC
*
24503346 TAAGCCCCAGCCAGACCGAGGGTTGT
259 TAAGCCCCAGCCGGACCGAGGGTTGT
24503372 CATAGCGGGA
Statistics
Matches: 1119, Mismatches: 224, Indels: 66
0.79 0.16 0.05
Matches are distributed among these distances:
352 2 0.00
353 120 0.11
354 56 0.05
355 4 0.00
356 103 0.09
357 2 0.00
358 1 0.00
360 1 0.00
361 1 0.00
362 3 0.00
363 229 0.20
364 3 0.00
365 1 0.00
366 1 0.00
367 65 0.06
368 403 0.36
369 123 0.11
370 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (364 bp):
TGCCACTCCAGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGCGAC
AGCAGGATCAGCAGCACGCAGGGGGAACCAGGCGATCCCCGACTTGTGCATTCTGCCTCTCCGGC
CGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTA
AGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACTGGCAACAGGATCGACAGCATGAAGAGGGG
GATCAGGCTGATCCCCGACTTGCGCATTATGCCTCTCCG
Found at i:24502806 original size:26 final size:26
Alignment explanation
Indices: 24502776--24502828 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24502766 ATTGTCTTAG
24502776 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24502802 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24502828 G
1 G
24502829 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24503185 original size:26 final size:26
Alignment explanation
Indices: 24503139--24503191 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24503129 GTTGACTTAG
*
24503139 GCATACGAAGTTCATCGCCAGTCTAA
1 GCATACGAAGTCCATCGCCAGTCTAA
*
24503165 GCATACGGAGTCCATTC-CCAGTCTAA
1 GCATACGAAGTCCA-TCGCCAGTCTAA
24503191 G
1 G
24503192 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTCCATCGCCAGTCTAA
Found at i:24503292 original size:731 final size:719
Alignment explanation
Indices: 24501634--24503370 Score: 2047
Period size: 731 Copynumber: 2.4 Consensus size: 719
24501624 TTGCGCATCC
* * *
24501634 TGCCTCTCTAGCCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTTGGCATACGAAGTTC
1 TGCCTCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
*
24501699 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGGGACCAGATTGAGGGTTGCGAC
66 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCGAC
* * * * * *
24501764 TGCAGGATCAGTAGAACGCAAGAGGGATCAGGCCGATCCCCAGCTTGTGCATTCTACCTCTCCGA
131 AGCAGGATCAGTAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTACCTCTCCG-
* * * * *
24501829 CCGATTGAGCGCCCGCACAC-TT-GTTTCGTCGGTTGGTTA-GCATACGGAGTACATTCCATGTC
195 CCGACTGAGC-ACC-CACACGTTCGTTTCGTGGGTTGCTTAGGCATACGGAGTATATTCCATGTC
* *** * *** *
24501891 TAAGCCCCAGCCAGACCGAAGGTTGTGGTAGCAGGACCGACAACGGGATCGACAGCATGTAGAGG
258 TAAGCCCCAGCCAGACCGAGGGTTGCAATAGCAGGACAGACAACGGGATCGACAGCACACAGAGA
* * *
24501956 GGGATCAGGCTGATCCCCGACTTGCGTATTATGCCTCTCTAGTCGACTGAGTGCCTACACGCTCA
323 GGGACCAGGCTGATCCCCGACTTGCGTATTATGCCTCTCTAGTCGACTGAGCGCCCACACGCTCA
* *
24502021 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAACCATATAGAGTTCATTCCCAG
388 TTTCATGGATTGACTTAGGCATACGGAGTTCATCCCCAGTCTAACCATACAGAGTTCATTCCCAG
** * * *
24502086 TCTAAGATTGGATCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGGACCAAGC
453 TCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCAACAGCACGCAGGGGGAGACCAAGC
* * * * *
24502151 TAATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTGAGTGCCCACACGCTCGTTTCGTGGGT
518 CAATCCCCGACTTACACATTCTGCCTCTCAGGCCGGCTGAGTGCCCACACGCTCATTTCGTGGGT
* * * **
24502216 TGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGTTGGATTGAGGGTTGTGGCAGCAG
583 TGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCACAGCTGGACCGAGGGTTGTGGCAGCAG
* * ** *
24502281 GACTGGCAGAAGGATCGGCAACATGAAGAGGGGGATCAGATTGATCCTTGGCTTGCGCATTATGC
648 GACTGGCAGAAGGATCGGCAACACGAAGAGGGGGATCAGACTGATCCCCGGCATGCGCATTATGC
* *
24502346 CTTTTCG
713 CTCTCCG
* * * * * *
24502353 ATTGACCACTCCAGCCAGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAG
1 --TG-CCTCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAG
* *
24502418 TTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGC
63 TTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGC
* * * * * * *
24502483 GGCAGCAAGATCGGTAGCATGCAGGGGGAACCAGG-CGAATCCCCGACTTGTGCATTCTGCCTCT
128 GACAGCAGGATCAGTAGCACGCAGGGGGGACCAGGCCG-ATCCCCGGCTTGTGCATTCTACCTCT
* * * * * * ** *
24502547 CTGGTCGGCTGAGCACCCACACGTTCATTTTGTGGGCTGACTTAGGCATACATAGTATATTCCAC
192 C-CGCCGACTGAGCACCCACACGTTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTATATTCCAT
* *
24502612 GTCTAAGCCCCAGCCGGACCGAGGGTTGCAATAGCAGGACTAG-CAACGGGATCGATAGCACACA
255 GTCTAAGCCCCAGCCAGACCGAGGGTTGCAATAGCAGGAC-AGACAACGGGATCGACAGCACACA
* *
24502676 GAGAGGGACCGGGCTGATCCCCGACTTGCGTATTATGCCTCTCCGATCGGGCTTTCCGGTCGACT
319 GAGAGGGACCAGGCTGATCCCCGACTTGCGTATTATG-C-CT-C--T----C--T--AGTCGACT
* * *
24502741 GAGCGCCCACACGCTCATTTCGTGGATTGTCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
371 GAGCGCCCACACGCTCATTTCATGGATTGACTTAGGCATACGGAGTTCATCCCCAGTCTAACCAT
* * * *
24502806 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGCAGCAGGATCAACAGCAT
436 ACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCAACAGCAC
* * * * * **
24502871 GCA-GGGGAGATCGAGCCGATCCTCGACTTACGCATTCTGCCTCTCAGGCCGGCTGAGTGCCCGT
501 GCAGGGGGAGACCAAGCCAATCCCCGACTTACACATTCTGCCTCTCAGGCCGGCTGAGTGCCCAC
* ** *
24502935 ATGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTACATTCCACATCTAAGCCATAGCTGGACC
566 ACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCACAGCTGGACC
* * * * * * * *
24503000 GAGGGTTTTGG-AGCAGGACTGGCAGTCA-GATCGGTAGCACGTAGATGGGGATCGGGCTGATCC
631 GAGGGTTGTGGCAGCAGGACTGGCAG-AAGGATCGGCAACACGAAGAGGGGGATCAGACTGATCC
*
24503063 CCGGCATGGGCATTATGCCTCTCCG
695 CCGGCATGCGCATTATGCCTCTCCG
* * *
24503088 -GCCTCTCTGGCTGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
1 TGCCTCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
* * * **
24503152 ATCGCCAGTCTAAGCATACGGAGTCCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGAC
66 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCGAC
* * *
24503217 AGCAGGTTCAGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTT-TCGCATTCTACCTCTCCA
131 AGCAGGATCAGTAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGT-GCATTCTACCTCTCC-
* * ** *
24503281 GCCGACTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGT-TCATTCCATGT
194 GCCGACTGAGCACCCACACGTTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTAT-ATTCCATGT
24503345 CTAAGCCCCAGCCAGACCGAGGGTTG
257 CTAAGCCCCAGCCAGACCGAGGGTTG
24503371 TCATAGCGGG
Statistics
Matches: 842, Mismatches: 147, Indels: 44
0.82 0.14 0.04
Matches are distributed among these distances:
720 5 0.01
721 8 0.01
722 178 0.21
723 4 0.00
724 102 0.12
725 2 0.00
726 2 0.00
727 1 0.00
729 1 0.00
730 2 0.00
731 231 0.27
732 4 0.00
733 1 0.00
735 61 0.07
736 115 0.14
737 125 0.15
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (719 bp):
TGCCTCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCGAC
AGCAGGATCAGTAGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGC
CGACTGAGCACCCACACGTTCGTTTCGTGGGTTGCTTAGGCATACGGAGTATATTCCATGTCTAA
GCCCCAGCCAGACCGAGGGTTGCAATAGCAGGACAGACAACGGGATCGACAGCACACAGAGAGGG
ACCAGGCTGATCCCCGACTTGCGTATTATGCCTCTCTAGTCGACTGAGCGCCCACACGCTCATTT
CATGGATTGACTTAGGCATACGGAGTTCATCCCCAGTCTAACCATACAGAGTTCATTCCCAGTCT
AAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCAACAGCACGCAGGGGGAGACCAAGCCAA
TCCCCGACTTACACATTCTGCCTCTCAGGCCGGCTGAGTGCCCACACGCTCATTTCGTGGGTTGG
CTTAGGCATACAGAGTACATTCCACATCTAAGCCACAGCTGGACCGAGGGTTGTGGCAGCAGGAC
TGGCAGAAGGATCGGCAACACGAAGAGGGGGATCAGACTGATCCCCGGCATGCGCATTATGCCTC
TCCG
Found at i:24503532 original size:26 final size:26
Alignment explanation
Indices: 24503482--24503534 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24503472 TTTGGCTTAG
* *
24503482 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24503508 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24503534 G
1 G
24503535 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24504201 original size:26 final size:25
Alignment explanation
Indices: 24504165--24504216 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
24504155 GTTAACTTAG
24504165 GCATACAGAGTTCATCCACAGTCTAA
1 GCATACAGAGTTCATCC-CAGTCTAA
* *
24504191 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATCCCAGTCTAA
24504216 G
1 G
24504217 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCAGTCTAA
Found at i:24504880 original size:25 final size:26
Alignment explanation
Indices: 24504845--24504896 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
24504835 GTTCACTTAG
24504845 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24504871 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24504896 G
1 G
24504897 AGCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24506320 original size:175 final size:175
Alignment explanation
Indices: 24506015--24506340 Score: 429
Period size: 175 Copynumber: 1.9 Consensus size: 175
24506005 CTGAGCGCCC
* ** *
24506015 GCACGCTCATTTTATGGGTTGGCTTAGGCATACGAAGAACATTCCACATCTAAGCCCCAGTTGGA
1 GCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGAACATTCCACATCTAAGCCCCAGCCGAA
* * * * * *
24506080 CCGAGGGTTATGGTAGTAGGACCGGCAGCGGGATCAGTAGCAAGCAGAGGGGGATCGATCTGATC
66 CCGAGGGTTATGGCAGCAGGACCGGCAGCGGGATCAGCAGCAAGCAGAGGGGAACCGAGCTGATC
**
24506145 CCTGGCTTGCACATTATGCCTTTTTGATCGGGCGGTTGAGTGCGT
131 CCCAGCTTGCACATTATGCCTTTTTGATCGGGCGGTTGAGTGCGT
* * **
24506190 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCATGTCTAAGCCCCAGCCGAA
1 GCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGAACATTCCACATCTAAGCCCCAGCCGAA
* * * * *
24506255 CCGAGGGTTGTGGCAGCAGGACTGGCAGCGGGATC-GACAGCATGCAGAGGGTAACCGGGCTGAT
66 CCGAGGGTTATGGCAGCAGGACCGGCAGCGGGATCAG-CAGCAAGCAGAGGGGAACCGAGCTGAT
* *
24506319 CCCCAGCTTTCGCATTATGCCT
130 CCCCAGCTTGCACATTATGCCT
24506341 CTCTGACCGG
Statistics
Matches: 127, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
174 1 0.01
175 126 0.99
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.23
Consensus pattern (175 bp):
GCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGAACATTCCACATCTAAGCCCCAGCCGAA
CCGAGGGTTATGGCAGCAGGACCGGCAGCGGGATCAGCAGCAAGCAGAGGGGAACCGAGCTGATC
CCCAGCTTGCACATTATGCCTTTTTGATCGGGCGGTTGAGTGCGT
Found at i:24506657 original size:12 final size:12
Alignment explanation
Indices: 24506642--24506671 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
24506632 GTGGCAGCAA
*
24506642 GATCGGCAGTGG
1 GATCGGCAGCGG
24506654 GATCGGCAGCGG
1 GATCGGCAGCGG
24506666 GATCGG
1 GATCGG
24506672 TAGCACGCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.20, G:0.50, T:0.13
Consensus pattern (12 bp):
GATCGGCAGCGG
Found at i:24507284 original size:159 final size:159
Alignment explanation
Indices: 24506896--24507298 Score: 420
Period size: 159 Copynumber: 2.5 Consensus size: 159
24506886 CAGGTTACGT
* * *
24506896 ATTCTACCTCTCTGGTCTGCTGAGCGCCCGCACGAC-CGTTTCGTGGGTTGGCTTAGGCATA-GT
1 ATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACG-CTCGTTTCGTGGGTTGGCTTAGGCATACG-
* * * * * ** *
24506959 GAGCTCATTCCATGTCCAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTGGGACCGGCAGCATGCA
64 GAGTTCATTCCATGTCTAAGCACCAGACAGACCGAGGGTTGGGGCAGCAGGACCGACAGCATGCA
*
24507024 GAGGGGGACTGGGCCAATCCTCGACTTGCGC
129 GAGGGGGACTGGGCCAATCCCCGACTTGCGC
* * * * * * * * **
24507055 ATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTTTGTGCGTTGACTTCTGCATACGGA
1 ATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
* * * * *
24507120 GTTCATTCTCA-GTCTAAG-ATCAGATAGGATCGAGGGTTGGGGTAGCAGGATCGACAGCATGCA
66 GTTCATTC-CATGTCTAAGCACCAGACA-GACCGAGGGTTGGGGCAGCAGGACCGACAGCATGCA
* * * * *
24507183 G-GGAGGGATTGGGTCGATCCCCGGCTTGTGC
129 GAGG-GGGACTGGGCCAATCCCCGACTTGCGC
* *
24507214 ATTCTGCCTCTCCAGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
1 ATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
24507279 GTTCATTCCATGTCTAAGCA
66 GTTCATTCCATGTCTAAGCA
24507299 TACGGAGCTC
Statistics
Matches: 193, Mismatches: 44, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
158 9 0.05
159 180 0.93
160 4 0.02
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.25
Consensus pattern (159 bp):
ATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCACCAGACAGACCGAGGGTTGGGGCAGCAGGACCGACAGCATGCAGA
GGGGGACTGGGCCAATCCCCGACTTGCGC
Found at i:24507310 original size:26 final size:26
Alignment explanation
Indices: 24507270--24507322 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24507260 GTTGGCTTAG
*
24507270 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
24507296 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
24507322 G
1 G
24507323 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:24508031 original size:26 final size:26
Alignment explanation
Indices: 24507995--24508045 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
24507985 TGACTTAGAG
24507995 ATATGGAGTTCATCCCCAGTCTAAGC
1 ATATGGAGTTCATCCCCAGTCTAAGC
24508021 ATATGGAGTTCATCCCCAGTCTAAG
1 ATATGGAGTTCATCCCCAGTCTAAG
24508046 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATATGGAGTTCATCCCCAGTCTAAGC
Found at i:24508397 original size:26 final size:26
Alignment explanation
Indices: 24508361--24508413 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24508351 GTTGACTTAG
24508361 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24508387 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24508413 G
1 G
24508414 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24508666 original size:368 final size:368
Alignment explanation
Indices: 24507942--24508979 Score: 1161
Period size: 368 Copynumber: 2.8 Consensus size: 368
24507932 TGCGCATCCT
* * **
24507942 GCCTCTCTGGTAGACTGAGCGTCCGTACGCTCGTTTCGTGGGTTGACTTAGAG-ATATGGAGTTC
1 GCCTCTCTGGTAGACTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAG-GCATATGGAGTTC
* * *
24508006 ATCCCCAGTCTAAGCATATGGAGTTCATCCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGAC
65 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGAC
* * * * * * * *
24508071 AGCAGGATCGGTAG--CGTGCAGAGGGCACCAGG-TCGATCCCCGACTTGTGTATTCTACCTCTT
130 AGCAGGATCGGCAGCACGT-CAG-GGGGATCGGGCT-GATCCCAG-CTTGCGCATTCTACCTCTC
* * *
24508133 CGACCGGCTGAGCGCCCGCATGCTCGTTTCATGGTTTGGCCTAGGCATACGGAGTACATTCCATG
191 CGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATG
* * * * * * *
24508198 TCTAA-GCCCTAGCTGGACCGAGGGTTGTGGCAGTAGGACTGACAGCGGGATTGGCAGCACGTAG
256 TCTAAGGCCCTAGCCGGACCGAAGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGCAG
* * * * * *
24508262 AGGGGGACCGGACTGATCTCCGGCTTACGCATTATGCCTCTCCGATCG
321 AGAGAGACCGGACTGATCTCCGACTTACGAATTATGCCTCTCCGACCA
* * *
24508310 GCCTCTCTGGTAGGCTGAGTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCTGGTAGACTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCA
* ** ** * **
24508375 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTTTAAGATTGGATTGGATCGAGGGTTGTGGTA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGACA
* * * *
24508440 GTAGGATCGACAGCACGTAAGGGGGATCGGGCTGATCCCTAGCTTGCGCATTCTACCTCTCCGAT
131 GCAGGATCGGCAGCACGTCAGGGGGATCGGGCTGATCCC-AGCTTGCGCATTCTACCTCTCCGAC
* * * *
24508505 CGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGATTAGGCATATGGAGTACATTCCACGTCTA
195 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTA
* ** *
24508570 AGGCCC-AGCCGGATCGAAGGTTGTGGCAGCAGGACCGGTAGCGGGATCGACAGTACGCAGAGAG
260 AGGCCCTAGCCGGACCGAAGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGAG
* * * *
24508634 AGACCAGG-CTGATC-CTCGATTTATGAATTATGCCTCTCTGGCCA
325 AGACC-GGACTGATCTC-CGACTTACGAATTATGCCTCTCCGACCA
* * * *
24508678 GCCT-TTTCG-ACCGACTGAGTGCCCTCACGCTCGTTTCGTGGGTTGACTTAGGCATATGTAGTT
1 GCCTCTCTGGTA--GACTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTT
* * *
24508741 CATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCAGATCAGACCGAGGGTTACGA
64 CATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGA
* *
24508806 CAGCAGGATCGGCAGCACG-CAGGGGTGATCGGGCTGATCTCGGCTTGCGCATTC-AGCCTCTCC
129 CAGCAGGATCGGCAGCACGTCAGGGG-GATCGGGCTGATCCCAGCTTGCGCATTCTA-CCTCTCC
* * * *
24508869 GACCGGTTGAGCACCCGCACGCCCGTTTCATGGGGTTGGCTTAGGCATAGGGAGCT-CATTCCAT
192 GACCGGCTGAGCGCCCGCACGCTCGTTTCAT-GGGTTGGCTTAGGCATACGGAG-TACATTCCAT
* * * *
24508933 GTCTAA-GCCCTAGCTGGACC-AAGGGTTGTAGCAGCGGGATCGACAGC
255 GTCTAAGGCCCTAGCCGGACCGAA-GGTTGTGGCAGCAGGACCGACAGC
24508980 ACGTAGAGAG
Statistics
Matches: 558, Mismatches: 96, Indels: 32
0.81 0.14 0.05
Matches are distributed among these distances:
366 2 0.00
367 61 0.11
368 481 0.86
369 11 0.02
370 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (368 bp):
GCCTCTCTGGTAGACTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCA
TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGACA
GCAGGATCGGCAGCACGTCAGGGGGATCGGGCTGATCCCAGCTTGCGCATTCTACCTCTCCGACC
GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAA
GGCCCTAGCCGGACCGAAGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGAGA
GACCGGACTGATCTCCGACTTACGAATTATGCCTCTCCGACCA
Found at i:24509622 original size:26 final size:26
Alignment explanation
Indices: 24509585--24509637 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24509575 GTTGACTTAG
*
24509585 GCATACGGAGTTCACTCCTAGTCTAA
1 GCATACGAAGTTCACTCCTAGTCTAA
*
24509611 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCACTCCTAGTCTAA
24509637 G
1 G
24509638 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCTAGTCTAA
Found at i:24509651 original size:355 final size:349
Alignment explanation
Indices: 24509201--24509965 Score: 884
Period size: 355 Copynumber: 2.2 Consensus size: 349
24509191 GACTGTACGG
* * * * * *
24509201 CCGCACGCTCGTTTCTTGGGTTGGCTTAGACATACGAAGTTAATTCCATCTCTAAGCATACGAAG
1 CCGCACGCTCATTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCATACGAAG
*
24509266 TTCATTCCTAGTCTAAGATCAGACCGGATCGAGGCTTGC-GATAGTAAGATTGGCAGCATGCAGA
65 TTCATTCCTAGTCTAAGATCAGACCGGATCGAGGCTTGCAG-TAGTAAGATCGGCAGCATGCAG-
* * * *
24509330 AGGGGACTGAGCCGATCCCCGACTTGCACATTCTGCCTCTCTGGCACG-CTGAGCACCCGAATGC
128 AGGGGACAGAGCCGATCCCCGACTTACACATTCTGCCTCTCCGGC-CGACTGAGCACCCGAACGC
* *
24509394 TCGTTTTGTGGGTTGGCTTAGGCATACGGAGTGCATTCCACGTCTAAGCCCCAGCCGGACC-GAG
192 TC-----GTGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGCCGGACCAG-G
* * * * *
24509458 GGTTATGGCATCAAGACC-GACAGCGGGA-C-AGTAGCACGTAGAGGGGGATCAG-GTTGATCCC
251 GGTTATGGCAGCAAGACCAG-CAGCAGGATCGA-CAGCACGCAGAGGGGGA-CAGAGCTGATCCC
* * *
24509519 CGGCTTACGTATTATGCCTCT-TCGATCGG-TAGAGCAC
313 CGACTTACGCATTATGCCTCTCT-GACCGGCT-GAGCAC
* *
24509556 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCTAGTCTAAGCATACGAAG
1 CCGCACGCTCATTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAAGCATACGAAG
* * * * *
24509621 TTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCAGTAGTAAGATCGGCAGCATGTAGGG
65 TTCATTCCTAGTCTAAGATCAGACCGGATCGAGGCTTGCAGTAGTAAGATCGGCAGCATGCAGAG
* ** * * *
24509686 GGGACAGGGCCGATCCCCGACTTACGTATTCTGTCTCTCCGGCCGACTGAGCGCCCGCACGCTCG
130 GGGACAGAGCCGATCCCCGACTTACACATTCTGCCTCTCCGGCCGACTGAGCACCCGAACGCTCG
* * *
24509751 TGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCTAGTCGGACCAGGGGTTGTGGC
195 TGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGCCGGACCAGGGGTTATGGC
* * * *
24509816 AGCAGGATCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCGAGCTGATCCCCGACTTGCGCAT
260 AGCAAGACCAGCAGCAGGATCGACAGCACGCAGAGGGGGACAGAGCTGATCCCCGACTTACGCAT
* **
24509881 TATGCCTCTCTGGCCGGCTGAGTGC
325 TATGCCTCTCTGACCGGCTGAGCAC
* *
24509906 CCGTACGCTCATTTTTTTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA-CATA
1 CCGCACGCTCA-TTTCTTGGGTTGACTTAGGCATACGGAGTTCA-TTCCAGTCTAAGCATA
24509966 GGATCAGACC
Statistics
Matches: 350, Mismatches: 48, Indels: 29
0.82 0.11 0.07
Matches are distributed among these distances:
349 74 0.21
350 66 0.19
351 40 0.11
352 3 0.01
353 2 0.01
354 52 0.15
355 111 0.32
356 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (349 bp):
CCGCACGCTCATTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGAAGT
TCATTCCTAGTCTAAGATCAGACCGGATCGAGGCTTGCAGTAGTAAGATCGGCAGCATGCAGAGG
GGACAGAGCCGATCCCCGACTTACACATTCTGCCTCTCCGGCCGACTGAGCACCCGAACGCTCGT
GGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGCCGGACCAGGGGTTATGGCA
GCAAGACCAGCAGCAGGATCGACAGCACGCAGAGGGGGACAGAGCTGATCCCCGACTTACGCATT
ATGCCTCTCTGACCGGCTGAGCAC
Found at i:24511170 original size:26 final size:26
Alignment explanation
Indices: 24511134--24511186 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24511124 GTTGACTTAG
24511134 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24511160 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24511186 G
1 G
24511187 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24511822 original size:366 final size:365
Alignment explanation
Indices: 24511083--24512107 Score: 1325
Period size: 366 Copynumber: 2.8 Consensus size: 365
24511073 TGCGCATCCT
* *
24511083 GCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
24511148 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACAGCA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCA
*
24511213 GCAGGATCGACAGCATGC-AGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTC-TCTG
131 GCAGGATCG-CAGCA--CAAGGGGGGA-CCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTC-G
* * *
24511276 GCTGGCTGAGCGCTCGCACGC-CTGTTTTATGGGTTGGCTTAGGCATACGGAGTACATTCCACGT
191 GCCGGCTGAGCGCCCGCACGCTC-ATTTTATGGGTTGGCTTAGGCATACGGAGTACATTCCACGT
*
24511340 CTAAGCCCCAGTCGGACCGAGGGTTATGGTAGCAGGACCGGCAGCGGAATCGGCAGCACGCAAAA
255 CTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGAATCGGCAGCACGCAAAA
* * * *
24511405 GGGGACTGGGCTGATCCCCGGCTTATGCATTATGCCTCTCTAACTG
320 GGGGACCGGGCTGATCCCCGACATATGCATTATGCCTCTCGAACTG
* * * *
24511451 GCCTCTCCGGTCAGTTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATA-GGAGTTCA
1 GCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
24511515 TCCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATC-GACCGGATCGAGGGTTGCAGCA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCA
24511579 GCAGGATCTGCAGCACATAGGGGGGACCTGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGC
131 GCAGGATC-GCAGCACA-AGGGGGGACC-GGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGC
* * * * *
24511644 CGGCTGAGCGCCCGCACACTCATTTTGTTGGTTGGCTTAGGCATACAGAGTACATTCCACAATC-
193 CGGCTGAGCGCCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTACATTCCAC-GTCT
* * *
24511708 AAGCCCCAGTCGGACCAAGGGTTGTGGTAGCAGGACCGGCAGC-GAGATCGGCAGCACGCAGAGG
257 AAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGA-ATCGGCAGCACGCAAAAG
* * **
24511772 GGGACCGGGCTGATCCCTGACATGTGCATTATGCCTCTCCGGGC-G
321 GGGACCGGGCTGATCCCCGACATATGCATTATGCCTCT-CGAACTG
* * *
24511817 GCCTCTCTGGCCGGTTGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *
24511882 TCCCTAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGA-CTGAGGGTTGCGGC
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATC-GAGGGTTGCAGC
* * ** ** ** *
24511946 AGCAGGATCAGCAGCATGCAGGGGGGGACCGAGCCCATCCTTGAATTTTGCATTCTGCCTCTCCG
130 AGCAGGATC-GCAGCA--CAAGGGGGGACCG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTTCG
* * * * * *
24512011 GTCGGCTGAGCGCCTGCACGCT-AGTTTCATGGGTTGGCTTAAGCATAGGGAGCT-CATTCCATG
191 GCCGGCTGAGCGCCCGCACGCTCA-TTTTATGGGTTGGCTTAGGCATACGGAG-TACATTCCACG
24512074 TCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGC
254 TCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGC
24512108 GCGACCGACA
Statistics
Matches: 574, Mismatches: 65, Indels: 35
0.85 0.10 0.05
Matches are distributed among these distances:
364 1 0.00
365 3 0.01
366 265 0.46
367 104 0.18
368 86 0.15
369 112 0.20
370 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (365 bp):
GCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCA
GCAGGATCGCAGCACAAGGGGGGACCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGG
CTGAGCGCCCGCACGCTCATTTTATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGC
CCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGAATCGGCAGCACGCAAAAGGGGAC
CGGGCTGATCCCCGACATATGCATTATGCCTCTCGAACTG
Found at i:24511897 original size:26 final size:26
Alignment explanation
Indices: 24511868--24511920 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24511858 GTTGACTTAG
24511868 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
24511894 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
24511920 G
1 G
24511921 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:24512189 original size:159 final size:159
Alignment explanation
Indices: 24511891--24512284 Score: 370
Period size: 159 Copynumber: 2.5 Consensus size: 159
24511881 ATCCCTAGTC
* * * * * * *
24511891 TAAGCATATGGAGTTCATTC-CTAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATC
1 TAAGCATACGGAGCTCATTCTC-AGTCTAAGACCAGATCAGACCGAGGGTTGTGGCAGCAGGACC
* * ** ** * ** *
24511955 -AGCAGCATGCAGGGGGGGAC-CGAGCCCATCCTTGAATTTTGCATTCTGCCTCTCCGGTCGGCT
65 GA-CAGCACGCAGAGGGGGACACG-GCTGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCT
* * *
24512018 GAGCGCCTGCACGCTAGTTTCATGGGTTGGCT
128 CAGCGCCCGCACGCTAGTTTCATGGGTTGACT
* * * *
24512050 TAAGCATAGGGAGCTCATTC-CATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGTAGC-GCGA
1 TAAGCATACGGAGCTCATTCTCA-GTCTAAG-ACCAGATCAGACCGAGGGTTGTGGCAGCAG-GA
*
24512112 CCGACAGCACGCAGAGGGGGACACGGCTGATCCCCGACTTGCGCATTATGCCTCTTCGG-CTGGC
63 CCGACAGCACGCAGAGGGGGACACGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGGTC-GGC
* * **
24512176 TCAGTGCCCGCACGCTCGTTTGGTGGGTTGACT
127 TCAGCGCCCGCACGCTAGTTTCATGGGTTGACT
* * * **
24512209 TATGCATACGGAGTTCATTCTCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCAGGATTG
1 TAAGCATACGGAGCTCATTCTCAGTCTAAGACCAGATCAGACCGAGGGTTGTGGCAGCAGGACCG
24512274 ACAGCACGCAG
66 ACAGCACGCAG
24512285 GGAAGACCGG
Statistics
Matches: 189, Mismatches: 37, Indels: 18
0.77 0.15 0.07
Matches are distributed among these distances:
158 6 0.03
159 174 0.92
160 9 0.05
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.23
Consensus pattern (159 bp):
TAAGCATACGGAGCTCATTCTCAGTCTAAGACCAGATCAGACCGAGGGTTGTGGCAGCAGGACCG
ACAGCACGCAGAGGGGGACACGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAG
CGCCCGCACGCTAGTTTCATGGGTTGACT
Found at i:24513122 original size:26 final size:26
Alignment explanation
Indices: 24513086--24513136 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24513076 GTTGACTTAG
24513086 GCATACAGAGTTCATCCCCAGTCTAT
1 GCATACAGAGTTCATCCCCAGTCTAT
* *
24513112 GCATACAGAGTTCATTCCTAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
24513137 AGATCGGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAT
Found at i:24513811 original size:26 final size:26
Alignment explanation
Indices: 24513759--24513811 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24513749 GTTAGCTTAG
* *
24513759 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATGTATAA
24513785 GCATACGGAGCTCATTCCCA-GTATAA
1 GCATACGGAGCTCATT-CCATGTATAA
24513811 G
1 G
24513812 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATGTATAA
Found at i:24514959 original size:26 final size:26
Alignment explanation
Indices: 24514929--24514981 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24514919 GTTGGCTTAG
*
24514929 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
24514955 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
24514981 G
1 G
24514982 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:24515690 original size:26 final size:26
Alignment explanation
Indices: 24515654--24515704 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24515644 TTGACTTAGG
24515654 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACGGAGTTCATCCCCAGTCTAAA
* *
24515680 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
24515705 GATCGGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAA
Found at i:24516305 original size:368 final size:365
Alignment explanation
Indices: 24515602--24516997 Score: 1507
Period size: 368 Copynumber: 3.8 Consensus size: 365
24515592 TGCGCATCCT
* * * * *
24515602 ACCTCTTTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 ACCTCTCTGGCCGGCTGAGCTCCTGCACGCTCGTTTCGAGGGTTGACTTAGGCATACGGAGTTCA
* * * * **
24515667 TCCCCAGTCTAAACATATGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACTGAGGGTTGTAAT
66 TCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATC-GGACTGAGGGTTGTAGC
* * * * *
24515731 AGTAAGATCGATAGCACGCAGGAGGGACCGAGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGA
130 AGCAGGATCGACAACACG-AAGAGGGA-CGAGTCGATCC-CGACTTGCGCATTCTGCCTCTCCGA
* *
24515796 ACGGCTGAGCTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCT
192 TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCT
* * * *
24515861 AAACCCCAGCCGAACTGAGGGTTGTGGCAGCATGACTGGTAGC-AGGATCGGTAGCACGCAGTA-
257 AAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGACTGGCAGCGA-GATCGGTAGCACGCAG-AG
* ** * * *
24515924 GGGGATTGGGCTGATCCCTGAATTGTGCATTATGCCTCTCCAACCA
320 GGGGATCGGGCTGATCCCTGGCTTGTGCATTATGCCTCTCTAGCCG
*
24515970 ACCTCTCTGGCCGGCTGAGCTCCTGCACGCTCGTTTCGAGGGTTGACTTAGGCATATGGAGTTCA
1 ACCTCTCTGGCCGGCTGAGCTCCTGCACGCTCGTTTCGAGGGTTGACTTAGGCATACGGAGTTCA
* *
24516035 TCCCCAGTCTAA-CTATACGAAGTTCATTCCCATTCTAAGATCAGATTGGA-TCGAGGGTTGTAG
66 TCCCCAGTCTAAGC-ATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACT-GAGGGTTGTAG
* * * *
24516098 TAGCAGGATCGACAACACGTAAGAGGGATCG-GGCTGATCTCCGACTTGCCCATTCTGCCTCTTC
129 CAGCAGGATCGACAACACG-AAGAGGGA-CGAGTC-GATC-CCGACTTGCGCATTCTGCCTCTCC
* * *
24516162 GATCGGCTGAGCACCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGT
190 GATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGT
* * **
24516227 CTAAGCCCCAGTCGAATCGAGGGTTGTGGCAGCAGGACTGGCAGCGAGATCGAAAGCACGCAGAG
255 CTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGACTGGCAGCGAGATCGGTAGCACGCAGAG
* * *
24516292 GGGGATCGGGCTGATCCCCGGCTTGGGCATTATGCCTCTCTGGCCG
320 GGGGATCGGGCTGATCCCTGGCTTGTGCATTATGCCTCTCTAGCCG
* *
24516338 ACCTCTTTGGCCGGCTGAGCTCCTGCACGCTCGTTTC-ATGGGTTTACTTAGGCATACGGAGTTC
1 ACCTCTCTGGCCGGCTGAGCTCCTGCACGCTCGTTTCGA-GGGTTGACTTAGGCATACGGAGTTC
** * * * *
24516402 ATCCTGAGTCTAAGCATAC-AGAGTTAATTCCCAGTCTAAGATCGGATCGGA-TCGAGGGATG-C
65 ATCCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCAGATCGGACT-GAGGGTTGTA
* * * *
24516464 GACAGCAGCATCGACTTTACAC--AG-GGGACCAGATCGATCCCCAGCTTGCGCATTCTGCCTCT
128 G-CAGCAGGATCGAC--AACACGAAGAGGGACGAG-TCGATCCCGA-CTTGCGCATTCTGCCTCT
* * *
24516526 CCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGG-GTACATTCCAC
188 CCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCAT
* * * * * * * *
24516590 ATCTAAGCCCCAGTCGGACCAAGGGTTGTGGTC-GCAGGACCGACAGTGGGATCGGTAGCACGCA
253 GTCTAAGCCCCAGCCGAACCGAGGGTTGTGG-CAGCAGGACTGGCAGCGAGATCGGTAGCACGCA
* *
24516654 GAGGGGGATCGGGCTGATCCCTGGCTTGTGCATTATACCTCTCTAGTCG
317 GAGGGGGATCGGGCTGATCCCTGGCTTGTGCATTATGCCTCTCTAGCCG
* * * * * * *
24516703 GCCTCTCCGGTCGGCTGAGCGT-CTGTACGCTCGTTTTGCGGGTTGACTTAGGCATACGTAGTTC
1 ACCTCTCTGGCCGGCTGAGC-TCCTGCACGCTCGTTTCGAGGGTTGACTTAGGCATACGGAGTTC
* * * * **
24516767 ATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGATTGGGGC
65 ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTAGC
* ** * * * * * *
24516832 AGTAGGATCGGTAGCACGCAGGGAGGACTGGGTCGATCCCCGGCTTGCGCATTCTGTCTCTCCGA
130 AGCAGGATCGACAACACGAAGAG-GGAC-GAGTCGAT-CCCGACTTGCGCATTCTGCCTCTCCGA
* * * *
24516897 TCGGTTGA-CTGCCCGCACGCCCGATTT-GTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATG
192 TCGGCTGAGC-GCCCGCACGCTCG-TTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCATG
* * * *
24516959 TCTCAGCCCCAACCGGACCGAGGGTTGTGGCAGTAGGAC
254 TCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGCAGGAC
24516998 CGGTAGCATG
Statistics
Matches: 869, Mismatches: 126, Indels: 66
0.82 0.12 0.06
Matches are distributed among these distances:
363 3 0.00
365 222 0.26
366 79 0.09
367 79 0.09
368 478 0.55
369 4 0.00
370 4 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (365 bp):
ACCTCTCTGGCCGGCTGAGCTCCTGCACGCTCGTTTCGAGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTAGCA
GCAGGATCGACAACACGAAGAGGGACGAGTCGATCCCGACTTGCGCATTCTGCCTCTCCGATCGG
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGC
CCCAGCCGAACCGAGGGTTGTGGCAGCAGGACTGGCAGCGAGATCGGTAGCACGCAGAGGGGGAT
CGGGCTGATCCCTGGCTTGTGCATTATGCCTCTCTAGCCG
Found at i:24516783 original size:26 final size:26
Alignment explanation
Indices: 24516754--24516806 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24516744 GTTGACTTAG
*
24516754 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24516780 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24516806 G
1 G
24516807 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24517285 original size:26 final size:26
Alignment explanation
Indices: 24517255--24517307 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24517245 GTTGGCTTAG
*
24517255 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
24517281 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24517307 G
1 G
24517308 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:24517432 original size:184 final size:185
Alignment explanation
Indices: 24517132--24517466 Score: 422
Period size: 184 Copynumber: 1.8 Consensus size: 185
24517122 GATTGGATCA
* * * * *
24517132 GATCGAGGGTTACGGTAGTTGGATTGATAGCACGCAGGGAGGGATCAGGTCGATCCCCGGCTTGC
1 GATCGAGGGTTACGGCAGTAGAATCGATAGCACGCAGGGAGGGATCAGGCCGATCCCCGGCTTGC
* * * *
24517197 ACATTCTGCCTCTCCAACCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACG
66 ACATTCTGCCTCTCCAACCGACTGAGCACCCGCACGCTTATTTCATGGGTTGGCTTAGGCACACG
*
24517262 GAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACTG
131 GAGCTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACTG
* * * * * * *
24517317 GATCTAGGGTTACGGCAGTAGAATCGGTAGCACGTA-GGAGGGATCGGGCCGGTCCCTGGCTTGT
1 GATCGAGGGTTACGGCAGTAGAATCGATAGCACGCAGGGAGGGATCAGGCCGATCCCCGGCTTGC
* *** * * *
24517381 GCATTCTGCCTCTCCGGTCGACTGAGCACCTGCACG-TTCATTTCGTGGGTTGGCTTAGGCACAG
66 ACATTCTGCCTCTCCAACCGACTGAGCACCCGCACGCTT-ATTTCATGGGTTGGCTTAGGCACAC
*
24517445 GGAGCTGATTCCATGTCTAAGC
130 GGAGCTCATTCCATGTCTAAGC
24517467 CCTAGCTGGA
Statistics
Matches: 124, Mismatches: 25, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
183 2 0.02
184 93 0.75
185 29 0.23
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (185 bp):
GATCGAGGGTTACGGCAGTAGAATCGATAGCACGCAGGGAGGGATCAGGCCGATCCCCGGCTTGC
ACATTCTGCCTCTCCAACCGACTGAGCACCCGCACGCTTATTTCATGGGTTGGCTTAGGCACACG
GAGCTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACTG
Found at i:24517948 original size:26 final size:26
Alignment explanation
Indices: 24517912--24517964 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24517902 GTTGACTTAT
*
24517912 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
24517938 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24517964 G
1 G
24517965 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24518249 original size:160 final size:158
Alignment explanation
Indices: 24518009--24518444 Score: 464
Period size: 160 Copynumber: 2.7 Consensus size: 158
24517999 GATAGCAAAT
* * * ** * *
24518009 AGGGGGGGATCGGGCCGATCCCCGGCTTGCCCCTTCTGTTTCTCCGGTCGGCTGAGGGCCCGCAC
1 AGGGGGGGA-CGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCAC
* * * *
24518074 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-CTGGACCA
65 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TCATTCCATGTCTAAGCACCAGACTAGACCA
** **
24518138 AGGGTTGTGGCAGCGGGACCGGTAGCACGC
129 AGGGTTGTGGCAGCAAGACCGACAGCACGC
* * *
24518168 AGAGGGGGGAGCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCA
1 AG-GGGGGGA-CGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCA
* * * * * *
24518233 CGTTCGTTTTGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACTAGAC
64 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TCATT-CCATGTCTAAGCACCAGACTAGAC
* * * **
24518296 CGAGGGTTGTGGTAGTAAGATTGACAGCACGC
127 CAAGGGTTGTGGCAGCAAGACCGACAGCACGC
* * * *
24518328 AGGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCTGCAC
1 AGGGGGGGAC-GGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCAC
* *
24518393 GCTCGTTTCGTGGTTTGGCTTAGCCATACGGAGTGCATTCCATGTCTAAGCA
65 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT-CATTCCATGTCTAAGCA
24518445 TACGGAGCTC
Statistics
Matches: 225, Mismatches: 45, Indels: 13
0.80 0.16 0.05
Matches are distributed among these distances:
158 5 0.02
159 96 0.43
160 121 0.54
161 3 0.01
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.23
Consensus pattern (158 bp):
AGGGGGGGACGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTCATTCCATGTCTAAGCACCAGACTAGACCAAG
GGTTGTGGCAGCAAGACCGACAGCACGC
Found at i:24518399 original size:159 final size:158
Alignment explanation
Indices: 24517937--24518442 Score: 509
Period size: 159 Copynumber: 3.2 Consensus size: 158
24517927 CCCCAATCTA
* * * **
24517937 AGCATACGGAGTTCATTCCCA-ATCTAAGATCAAACCAGACCGAGGGTTCCGGTAGTAAGATCGA
1 AGCATACGGAGTTCATT-CCATGTCTAAGATCAGACTAGACCGAGGGTTGTGGTAGTAAGATCGA
*** * * * ** *
24518001 TAGCAAATAGGGGGGGA-TCGGGCCGATCCCCGGCTTGCCCCTTCTGTTTCTCCGGTCGGCTGAG
65 TAGCACGCAGGGGGGGACT-GGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
* *
24518065 GGCCCGCACGCCCGTTTCGTGGGTTGGCTT
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* * ** * * * *** *
24518095 AGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-CTGGACCAAGGGTTGTGGCAGCGGGACCG
1 A-GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACTAGACCGAGGGTTGTGGTAGTAAGATCG
* * * *
24518159 GTAGCACGCAGAGGGGGGAGC-GGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCGGCCGGCTC
64 ATAGCACGCAG-GGGGGGA-CTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTG
* * *
24518223 AGCGCCCGCACGTTCGTTTTGTGGGTTGACTT
127 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* *
24518255 ATGCATACGAAGTTCATTCCCA-GTCTAAGATCAGACTAGACCGAGGGTTGTGGTAGTAAGATTG
1 A-GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTAGACCGAGGGTTGTGGTAGTAAGATCG
* * *
24518319 ACAGCACGCAGGGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAG
64 ATAGCACGCAGGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
* * *
24518384 CACCTGCACGCTCGTTTCGTGGTTTGGCTT
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCTT
*
24518414 AGCCATACGGAGTGCATTCCATGTCTAAG
1 AG-CATACGGAGTTCATTCCATGTCTAAG
24518443 CATACGGAGC
Statistics
Matches: 274, Mismatches: 63, Indels: 21
0.77 0.18 0.06
Matches are distributed among these distances:
158 9 0.03
159 141 0.51
160 121 0.44
161 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
AGCATACGGAGTTCATTCCATGTCTAAGATCAGACTAGACCGAGGGTTGTGGTAGTAAGATCGAT
AGCACGCAGGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTT
Found at i:24519187 original size:26 final size:26
Alignment explanation
Indices: 24519151--24519203 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24519141 GTTGACTTAG
24519151 GCATACGGAGTTC-TTCCCCAGTCTAA
1 GCATACGGAGTTCATT-CCCAGTCTAA
* *
24519177 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24519203 G
1 G
24519204 ATTAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24519716 original size:334 final size:335
Alignment explanation
Indices: 24519079--24520536 Score: 1228
Period size: 334 Copynumber: 4.3 Consensus size: 335
24519069 CCGCCCGTTC
** ** ** * *
24519079 GATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCTACACGCTCATTTTGTGGGTT
1 GATCCCCGGCTTGCGCATTATGCCTCTC-GACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * **
24519144 GACTTAGGCATACGGAGTTCTTCCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATTAG
65 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
24519209 ACTGGATCGAGGGTTGCGACAGTAGGATCGACAGCACACAGGAGGGATCGGGTCGATCCCC-GAC
130 ACTGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAG-C
* * * *
24519273 TTACGCATTCTGCCTCTCCGACCGACTGAGCGCCTGCACACTCATTTCATGGGTTGGCTTAGGCA
194 TTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCA
* * * *
24519338 TACAGAGTACATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGC-
259 TACGGAGTACATTCCACGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCAGGACCGACAGCG
*
24519402 A-GGATCAGGCT
324 AGGGACCAGGCT
* *
24519413 GATCCCCGGCTTGCGCATTATGCCTCTCTGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTATGCCTCTC-GACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
24519478 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
65 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* *
24519543 ACTGGATCGAGGGTTGCGACAGCAGGATCGACATG-GCGCAGGGGGGA-CGGGGCCGAACCCCAG
130 ACTGGATCGAGGGTTGCGACAGCAGGATCGACA-GCACGCAGGGGGGATC-GGGCCGATCCCCAG
* * * *
24519606 CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCGCGCTCATTTCGTGGGTTGGCTTATGC
193 CTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGC
* * *
24519671 ATACGGAGTACATTCCACGTCGAAGCCCTAGCTGGACCAAGGGTTGTGGCAGCAGGACTTGCAGT
258 ATACGGAGTACATTCCACGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCAGGA----C---
24519736 GGGATCGACAGCATGCAGAGGGGGACCAGGCT
316 -----CG--A-CA-GC-GA--GGGACCAGGCT
* * * * *
24519768 AATCCCCAGCTTGCGCATTATGCCTCATCGGCCGGCTGAGCGCCTGCACACTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTATGCCTC-TCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
24519833 GACTTAGGCATACAAAGTTTATCCCCAG--T---C-TA---AG---------A-T-T-AGAT---
65 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* ** * * * *
24519874 -C-GGATCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGAGGGGCTCGGGTCGATCCTC-GAC
130 ACTGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAG-C
* * * * * *
24519936 TTGCACATTCTGCCTCTCCGGTCGACTGGGTGCCCGCACACTCGTTTTGTGGGTTGGCTTAGGCA
194 TTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCA
* *
24520001 TACGGAGTACATTCCACGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGACAGCAGGACCGACAGC
259 TACGGAGTACATTCCACGTCTAAGCCCCAGCT-GGACCGAGGGTTGTGGCAGCAGGACCGACAGC
24520065 GGGATCGGCAGCACGCAAAGGGGGACCGGGCT
323 --GA--GG--G-AC-C--------A---GGCT
* * * * * * *
24520097 GATCCCTGGCTTGCG-ATTATGCCTCTCCAGCCGGCTGAACGTCCGCACGCTTGTTTCATAGGTT
1 GATCCCCGGCTTGCGCATTATGCCTCTCGA-CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
24520161 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGAATATGGAGTTCATTCCCAATCTAAGATCGG
65 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * * *
24520226 ACCGGACCGAGGGTTGCGGCAGCAGAATCGACAGCACGTAGGGGGGATCGAGCCGATCCCCGGCT
130 ACTGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCT
* * * * * * *
24520291 TGCGTATTCTGCCTTTTCGATTGGCTGAGCGCCCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCA
195 TGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACACTC-ATTTCGTGGGTTGGCTTAGGCA
* * * *
24520355 TAGGGAGCT-CATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATCGGTAGC
259 TACGGAG-TACATTCCACGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCAGGA-CCG-A-C
*
24520419 ACGCAGAGGGGGACC-GGACC
320 A-GC-GA--GGGACCAGG-CT
* * * * * * * *
24520439 GAT-CCCAGCTTGAGCATTATGCCTCTTCGGCTGGCTAAGCACCCGCACGTTCATTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTATGCCTC-TCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
24520503 GACTTATGCATACGGAGTTCATTCTCAGTCTAAG
65 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
24520537 ATCGGATCAG
Statistics
Matches: 903, Mismatches: 138, Indels: 158
0.75 0.12 0.13
Matches are distributed among these distances:
313 2 0.00
314 6 0.01
315 1 0.00
316 1 0.00
317 4 0.00
318 1 0.00
325 1 0.00
326 1 0.00
327 2 0.00
328 65 0.07
329 166 0.18
330 3 0.00
333 1 0.00
334 279 0.31
335 3 0.00
336 1 0.00
337 3 0.00
338 1 0.00
341 10 0.01
342 69 0.08
343 2 0.00
346 5 0.01
347 1 0.00
348 2 0.00
349 8 0.01
350 3 0.00
352 1 0.00
353 4 0.00
354 150 0.17
355 96 0.11
356 3 0.00
357 6 0.01
358 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (335 bp):
GATCCCCGGCTTGCGCATTATGCCTCTCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
ACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGA
CTGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTT
GCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATA
CGGAGTACATTCCACGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCAGGACCGACAGCGAG
GGACCAGGCT
Found at i:24520674 original size:159 final size:156
Alignment explanation
Indices: 24520200--24520695 Score: 534
Period size: 158 Copynumber: 3.1 Consensus size: 156
24520190 CTAAGAATAT
*
24520200 GGAGTTCATTCCCA-ATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGAATCGACAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAG-ATCGACAGCACG
* * * * *
24520264 TAGGGGGGATCGAGCCGATCCCCGGCTTGCGTATTCTGCCTTTTCGATTGGCTGAGCGCCCGCAC
64 TAGGGGGGACCG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTTGGCTGAGCACCCGCAC
*
24520329 GC-CTGTTTCGTGGGTTGGCTTAGGCATAG
128 GCTC-GTTTCGTGGGTTGGCTTAGGCATAC
* * ** * * * **
24520358 GGAGCTCATTCCATGTCTAAG-CCCCAGCTGGACCGAGGGTTGTGGCAGCGGGATCGGTAGCACG
1 GGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGC-AGATCGACAGCACG
* * * * * *
24520422 CAGAGGGGGACCGGACCGAT-CCCAGCTTGAGCATTATGCCTCTTCGGCTGGCTAAGCACCCGCA
64 TAG-GGGGGACCGG-CCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTTGGCTGAGCACCCGCA
* * * *
24520486 CGTTCATTTCGTGGGTTGACTTATGCATAC
127 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * * *
24520516 GGAGTTCATTCTCA-GTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCAAGATCAACAGCACA
1 GGAGTTCATTC-CATGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGC-AGATCGACAGCACG
* * * *
24520580 TAGTGGGGGACCAGGTCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCACCCGTA
64 TAG-GGGGGACC-GGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTTGGCTGAGCACCCGCA
24520645 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
127 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
24520675 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
24520696 CATACGAAGC
Statistics
Matches: 271, Mismatches: 56, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
157 5 0.02
158 164 0.61
159 102 0.38
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGATCGACAGCACGTA
GGGGGGACCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTTGGCTGAGCACCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATAC
Found at i:24520720 original size:26 final size:26
Alignment explanation
Indices: 24520669--24520721 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24520659 GTTGGCTTAG
* * *
24520669 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGCTCATTCCAAGTCTAA
24520695 GCATACGAAGCTCATTCCCAAG-CTAA
1 GCATACGAAGCTCATT-CCAAGTCTAA
24520721 G
1 G
24520722 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCAAGTCTAA
Found at i:24522095 original size:159 final size:158
Alignment explanation
Indices: 24521771--24522105 Score: 404
Period size: 159 Copynumber: 2.1 Consensus size: 158
24521761 ATCGCCAGTC
*
24521771 TAAGCATACGGAGTTCATTCCGAGTCTAAAATCAGACCGGATCGAGGGTTACGGTAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCGAGTCTAAAATCAGACCGGATCGAGGGTTACGATAGCAGGATCG
* ** * * * *
24521836 GCAGCACGTAGAGGGGACCGGATCGATCCTCGGCTTACACATTCTATCTCTTCGGTCGGCTGAGC
66 ACAGCACACAGAGGGGACCGGATCGATCCTCGGCTTACACATTCTACCTCTCCGATCGACTGAGC
* * * *
24521901 GCCTGCACGCTTGTTTCGTGGTTTAACT
131 GCCCGCACGCTCGTTTCATGGGTTAACT
* * * * * ** *
24521929 TATGCATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGTGATAGGAGGATCG
1 TAAGCATACGGAGTTCATTCCGAGTCTAAAATCAGACCGGATCGAGGGTTACGATAGCAGGATCG
* * * *
24521994 ACAGTACACAG-GGGAAGACCAGG-TCGATCCTCGGTTTGCCCATTCTACCTCTCCGATCGACTG
66 ACAGCACACAGAGGG--GACC-GGATCGATCCTCGGCTTACACATTCTACCTCTCCGATCGACTG
*
24522057 AGCGCCCGCACGCTCGTTTCATGGGTTGACT
128 AGCGCCCGCACGCTCGTTTCATGGGTTAACT
24522088 TAAGCATACGGAGTTCAT
1 TAAGCATACGGAGTTCAT
24522106 CCCCAATCTA
Statistics
Matches: 147, Mismatches: 27, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
157 3 0.02
158 63 0.43
159 79 0.54
160 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.25
Consensus pattern (158 bp):
TAAGCATACGGAGTTCATTCCGAGTCTAAAATCAGACCGGATCGAGGGTTACGATAGCAGGATCG
ACAGCACACAGAGGGGACCGGATCGATCCTCGGCTTACACATTCTACCTCTCCGATCGACTGAGC
GCCCGCACGCTCGTTTCATGGGTTAACT
Found at i:24522214 original size:343 final size:350
Alignment explanation
Indices: 24521355--24522694 Score: 990
Period size: 356 Copynumber: 3.8 Consensus size: 350
24521345 CTCTGGTCGG
* *
24521355 CTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATATGGATTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * *
24521420 ATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGGTAGCAAGATCGACAGC
66 ATACGGAGTTCATT-CCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGCAAGATCGACAGC
* * * * *
24521485 ACGCAGGGGGGACCGAGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCTTG
130 ACGCAGAGGGGACCG-GCCGATCTC-GGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCTG
** *
24521550 CACGCTCATTTCGTGGGTTGGCTTATGCATACAGAGTACATTCCACGTCTAAGCCCCAGTCGGAC
193 CACGCTCATTTCGTGGGTTAACTTATGCATACAGAGTACATTCCACGTCTAAGCACCAGTCGGAC
* *
24521615 CGAGGGTTATGGCAGTAGGACCGGCAGTGAGATCGGTAGCATGCAGAAGGGGATCGAGCTGATCC
258 CGAGGGTTATGGCAGTAGGA-CGGCAGTGAGATCAGTAGCA-GCAG-AGGGGATCCAGCTGATCC
* * * *
24521680 TCGGCTTGCACATTATGCCTCTCCGGTGGGG
320 TCGGCTTGCACATTATACCTCTCCGATGCGA
* * *
24521711 CTGAGCGCCCGTACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCGCCAGTCTAAGC
1 CTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * *
24521776 ATACGGAGTTCATTCCGAGTCTAAAATCAGACCGGATCGAGGGTTACGGTAGCAGGATCGGCAGC
66 ATACGGAGTTCATTCC-AGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGCAAGATCGACAGC
* * * * * * * *
24521841 ACGTAGAGGGGACCGGATCGATCCTCGGCTTACACATTCTATCTCTTCGGTCGGCTGAGCGCCTG
130 ACGCAGAGGGGACCGG-CCGAT-CTCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCTG
** * * *
24521906 CACGCTTGTTTCGTGGTTTAACTTATGCATACAGAGTTCATTCCTA-GTCTAAG-ATCAGATCGG
193 CACGCTCATTTCGTGGGTTAACTTATGCATACAGAGTACATTCC-ACGTCTAAGCACCAG-TCGG
* * * *
24521969 ATCGAGGGTTGT-G-A-TAGGA-GG-A-T-CGA-CAGTA-CA-CAG-GGGAAGA-CCAGGTCGAT
256 ACCGAGGGTTATGGCAGTAGGACGGCAGTGAGATCAGTAGCAGCAGAGGG--GATCCAGCT-GAT
* * *
24522022 CCTCGGTTTGCCCATTCTACCTCTCCGAT-CGA
318 CCTCGGCTTGCACATTATACCTCTCCGATGCGA
* * * * *
24522054 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAATCTAAAC
1 CTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* ** * * *
24522119 ATATGGAGTTTGTTCGCAGTCGAAGATCAGATTGGATCGAGGGTTACGGTAGTAAGATCGACAGC
66 ATACGGAGTTCATTC-CAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGCAAGATCGACAGC
* * * * * * * *
24522184 ACACAAAAGGGACCAGGCCGATGTTCGGCTTGCGCATTCTACCTCTCCAGTCGATTGAGCGCCCG
130 ACGCAGAGGGGACC-GGCCGAT-CTCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCTG
** * ** * * * * * * *
24522249 CACATTCATTTTGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTACGCCCCAGTCGAAT
193 CACGCTCATTTCGTGGGTTAACTTATGCATACAGAGTACATTCCACGTCTAAGCACCAGTCGGAC
* * * ** * * * * * * *
24522314 CGAGGGTTGTGGCAGCAGGATCGGTAACGGGTTC-GACAGCACGTAAAAGGGGA-CCGGGTTGAT
258 CGAGGGTTATGGCAGTAGGA-CGGCAGTGAGATCAG-TAGCA-G-CAGAGGGGATCC-AGCTGAT
* * * * * * *
24522377 CCCCGGCTTACGCGTTATGTCTCTCTGGCCGACCTCTCCAACCGG
318 CCTCGGCTTGCACATTAT-AC-CTCT--CCGA----T----GCGA
* * * * * * * *
24522422 CTGAGTGCCTGCACGCTCATTTCATGGGTTTACTTAGGCATACAGAGTTCATCCCTAGTCTAAGC
1 CTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * * * * *
24522487 ATACAGAGTTCATTTCCAGTCTAAGATCGGATCGGATCGAGGGTTGCAGCAGCAGGATTGGCAGC
66 ATACGGAGTTCA-TTCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGCAAGATCGACAGC
* * * * * * * * *
24522552 ATGCTGGGGGGATCGGGCCGATTCTCGGCTTACGCATTCTGCCTCTCTGACCGACTGAGTGCC-G
130 ACGCAGAGGGGA-CCGGCCGA-TCTCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCTG
* * * * ** * ** * * **
24522616 TACGCCCATTTCATGGATTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAACCGGA
193 CACGCTCATTTCGTGGGTTAACTTATGCATACAGAG-TACATTCCACGTCTAAGCACCAGTCGGA
*
24522680 CCGAGGGTTGTGGCA
257 CCGAGGGTTATGGCA
24522695 ACGGGATCGG
Statistics
Matches: 776, Mismatches: 163, Indels: 79
0.76 0.16 0.08
Matches are distributed among these distances:
342 4 0.01
343 216 0.28
344 39 0.05
345 1 0.00
346 6 0.01
347 4 0.01
348 4 0.01
349 2 0.00
350 1 0.00
351 4 0.01
352 2 0.00
353 7 0.01
354 1 0.00
355 26 0.03
356 225 0.29
357 10 0.01
359 4 0.01
363 1 0.00
367 65 0.08
368 149 0.19
369 5 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (350 bp):
CTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACGGAGTTCATTCCAGTCTAAGATCAGATCGGATCGAGGGTTACGGTAGCAAGATCGACAGCA
CGCAGAGGGGACCGGCCGATCTCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCTGCAC
GCTCATTTCGTGGGTTAACTTATGCATACAGAGTACATTCCACGTCTAAGCACCAGTCGGACCGA
GGGTTATGGCAGTAGGACGGCAGTGAGATCAGTAGCAGCAGAGGGGATCCAGCTGATCCTCGGCT
TGCACATTATACCTCTCCGATGCGA
Found at i:24522268 original size:184 final size:184
Alignment explanation
Indices: 24521951--24522285 Score: 422
Period size: 184 Copynumber: 1.8 Consensus size: 184
24521941 GTTCATTCCT
* ** * * **
24521951 AGTCTAAGATCAGATCGGATCGAGGGTTGTGATAGGAGGATCGACAGTACACAGGGGAAGACCAG
1 AGTCGAAGATCAGATCGGATCGAGGGTTACGATAGGAAGATCGACAGCACACAAAGG-AGACCAG
* * * *
24522016 GTCGATCCTCGGTTTGCCCATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCATGG
65 GCCGATCCTCGGCTTGCCCATTCTACCTCTCCGATCGACTGAGCGCCCGCACACTCATTTCATGG
24522081 GTTGACTTAAGCATACGGAGTTCATCCCCAATCTAAACATATGGAGTTTGTTCGC
130 GTTGACTTAAGCATACGGAGTTCATCCCCAATCTAAACATATGGAGTTTGTTCGC
* * *
24522136 AGTCGAAGATCAGATTGGATCGAGGGTTACGGTAGTAAGATCGACAGCACACAAAAGG-GACCAG
1 AGTCGAAGATCAGATCGGATCGAGGGTTACGATAGGAAGATCGACAGCACAC-AAAGGAGACCAG
** * * * **
24522200 GCCGATGTTCGGCTTGCGCATTCTACCTCTCC-AGTCGATTGAGCGCCCGCACATTCATTTTGTG
65 GCCGATCCTCGGCTTGCCCATTCTACCTCTCCGA-TCGACTGAGCGCCCGCACACTCATTTCATG
* *
24522264 GGTTGGCTTAGGCATACGGAGT
129 GGTTGACTTAAGCATACGGAGT
24522286 ACATTCCATG
Statistics
Matches: 125, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
183 1 0.01
184 77 0.62
185 44 0.35
186 3 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (184 bp):
AGTCGAAGATCAGATCGGATCGAGGGTTACGATAGGAAGATCGACAGCACACAAAGGAGACCAGG
CCGATCCTCGGCTTGCCCATTCTACCTCTCCGATCGACTGAGCGCCCGCACACTCATTTCATGGG
TTGACTTAAGCATACGGAGTTCATCCCCAATCTAAACATATGGAGTTTGTTCGC
Found at i:24523027 original size:158 final size:159
Alignment explanation
Indices: 24522585--24523040 Score: 436
Period size: 158 Copynumber: 2.9 Consensus size: 159
24522575 CTCGGCTTAC
* * * * * *
24522585 GCATTCTGCCTCTCTGACCGACTGAGTG-CCGTACGCCCATTTCATGGATTGGCTTAGGCATAGG
1 GCATTCTGCCTCTCCGACCGGCTGAGTGCCCGTAAGCCCGTTTCGTGGATTGGCTTAGGCATCGG
* * *
24522649 GAGCTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAACGGGATCGGCAGCACGCA
66 GAGCTCATTCCATGTCTAAGCTCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGC-
* * * *
24522714 AAGGGGGA-CTGGGTCGATCCTTGGCTTGT
130 AAGGGGGACCTGAGTCAATCCTCGACTTGT
* * * * ** ** * * * * *
24522743 GCATTATGCCTCTTCGACTGGCTCAGCACCCACAAGCTCGTTTCGTCGCTTGACTTATGCATAC-
1 GCATTCTGCCTCTCCGACCGGCTGAGTGCCCGTAAGCCCGTTTCGTGGATTGGCTTAGGCAT-CG
* * * * * ** * *
24522807 GGAGTTCATTCCCTGTTTAAGAT-CGGACCGGACCGAGGGTTGCAGCAGCAGGATCGACAGCACG
65 GGAGCTCATTCCATGTCTAAGCTCCAG-CCGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACG
24522871 CAAGGGGGACCT-AGTCAATCCTCGACTTGT
129 CAAGGGGGACCTGAGTCAATCCTCGACTTGT
* * * * *
24522901 GCATTCTGCCTCTCCAACCGGTTGAGTGCCCGTATGCCCGTTCCGTGGGTTGGCTTAGGCATCGG
1 GCATTCTGCCTCTCCGACCGGCTGAGTGCCCGTAAGCCCGTTTCGTGGATTGGCTTAGGCATCGG
* * * * *
24522966 GAGCTCATTCCATGTCTAAGCTCCAGCCGGACCGAAGGTTGTGGTAGCGGGACCGGTAGCACGTA
66 GAGCTCATTCCATGTCTAAGCTCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCA
24523031 GAGGGGGACC
131 -AGGGGGACC
24523041 AGACCATTGT
Statistics
Matches: 225, Mismatches: 66, Indels: 13
0.74 0.22 0.04
Matches are distributed among these distances:
157 1 0.00
158 137 0.61
159 87 0.39
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATTCTGCCTCTCCGACCGGCTGAGTGCCCGTAAGCCCGTTTCGTGGATTGGCTTAGGCATCGG
GAGCTCATTCCATGTCTAAGCTCCAGCCGGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGCA
AGGGGGACCTGAGTCAATCCTCGACTTGT
Found at i:24523599 original size:26 final size:26
Alignment explanation
Indices: 24523569--24523619 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24523559 TGACTTAGGC
24523569 ATACGGAGTTCATCCCCAGTCTAAGG
1 ATACGGAGTTCATCCCCAGTCTAAGG
* *
24523595 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
24523620 ATCAGAACGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGG
Found at i:24523727 original size:184 final size:183
Alignment explanation
Indices: 24523137--24523759 Score: 530
Period size: 184 Copynumber: 3.4 Consensus size: 183
24523127 CAATCCCCGG
* * * * * *
24523137 CTTGCGCATCCTCCCTCTCTGGTCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGC
1 CTTGCGCATTCTACCTCTCCGGTCCGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGC
* * *
24523202 ATACGGAGTTCATCCCCAATCGAAGGATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCG
66 ATACGGAGTTCATCCCC-ATCTAAGGATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAAACG
* * * *
24523267 AGGGTTACGATAGTAGGATC-AGCAGCACG-TGAGGGGGACCGGGCCGAT-CTCCGG
130 AGGGTT-CGGTAGCAGGATCGA-CAGCACGCAGAGGGGGACCGGGCCGATCCT-CGA
* * * ** *
24523321 CTTACGCATTCTACCTCTCCAGTCGGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTACCTCTCCGGTCCGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGC
* * ** *** * ** *
24523386 ATACGGAGTACATTCCACATCTAA-GCCAC--AG-TCGGACCGAGGGT-TGTGGTAGCAGGACCG
66 ATACGGAGTTCA-TCCCCATCTAAGGATACGGAGTTCATTCCTA--GTCT-AAG-ATCA-GACCG
* * * * * ** * *
24523446 ACA-GCGGGATCGGTAGCGGGATCGACAGCACGCAGAGAGGGATTGGGCTGATCC-CCA
125 AAACGAGGGTTCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGA
* * * * * * *
24523503 GCTTGCGGATTATGCCTCTCCGGCCCGCTGAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGG
1 -CTTGCGCATTCTACCTCTCCGGTCCGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGG
*
24523568 CATACGGAGTTCATCCCCAGTCTAAGGATACGGAGTTCATTCCTAGTCTAAGATCAGAACGAAAC
65 CATACGGAGTTCATCCCCA-TCTAAGGATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAAAC
*
24523633 GAGGGTTGCGGTAGCAGGATCGACAACACGCAG-GGGGGACCGGGCCGATCCTCGA
129 GAGGGTT-CGGTAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGA
* *** * * * * *
24523688 CTTGTGCATTCTACCTCTCCGGTATACTGAGTGCCCGCACGCTCATTTTGTCGGTTGCCTTAGGC
1 CTTGCGCATTCTACCTCTCCGGTCCGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGC
*
24523753 GTACGGA
66 ATACGGA
24523760 CATGTCTAAG
Statistics
Matches: 333, Mismatches: 87, Indels: 38
0.73 0.19 0.08
Matches are distributed among these distances:
180 5 0.02
181 3 0.01
182 26 0.08
183 100 0.30
184 159 0.48
185 32 0.10
186 3 0.01
187 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (183 bp):
CTTGCGCATTCTACCTCTCCGGTCCGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATCCCCATCTAAGGATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAAACGA
GGGTTCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGA
Found at i:24523965 original size:26 final size:26
Alignment explanation
Indices: 24523929--24523980 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24523919 GTTGACTTAG
*
24523929 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24523955 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24523981 AATCAGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24524256 original size:159 final size:157
Alignment explanation
Indices: 24524054--24524580 Score: 465
Period size: 158 Copynumber: 3.3 Consensus size: 157
24524044 CCCTGGCTTA
* * * * * ** *
24524054 CGCATTCTGCCTCTCCGACCGACTGAGTGCTTGCACGCCCGTTTAGTGGGTTACCTTAGGCATAC
1 CGCATTATGCCTCTTCGATCGGCTCAGTGCCCGCACACCCGTTTAGTGGGTTA-CTTAGGCATAC
* * * * *
24524119 GGAGCTCATTCCATGTCTAAGCCCCAG-CTGCATCGAGGGTTGTGGCAGTGGGACCGATAGCATG
65 GGAGCTCATTCCATGTCTAAGCCCCAGACAG-ACCGAGGGTTGTGGCAGCGGGATCGACAGCATG
* * *
24524183 CAAAGGGGGACCGGGCCGATCCCTGACTTG
129 C-AAGGGGGATCGGGCCAATCCCCGACTTG
* * * * * *
24524213 CGCATTATGCCTCTTCGATCGGTTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACATATGCATAC
1 CGCATTATGCCTCTTCGATCGGCTCAGTGCCCGCACACCCGTTTAGTGGGTT-ACTTAGGCATAC
* * ** * * * * * **
24524278 GGAGTTCATTCCCA-GTCTGAG-ATCAGACCGGACCAAGGGTTGCGGTAACAAGATCGACAGCAT
65 GGAGCTCATT-CCATGTCTAAGCCCCAGA-CAGACCGAGGGTTGTGGCAGCGGGATCGACAGCAT
*
24524341 GC-AGGGGGAATCGGGTCAATCCCCGACTTG
128 GCAAGGGGG-ATCGGGCCAATCCCCGACTTG
* * * * * * * *
24524371 TGCATTCTGCCTCTTCGATCGGCTGAGTACCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAG
1 CGCATTATGCCTCTTCGATCGGCTCAGTGCCCGCACACCCGTTTAGTGGGTT-ACTTAGGCATAC
* *
24524436 GGAGCTCATTCCATGTCTAAGCCCTAGACAGACCGAGGGTTGTGGCAGCGGGATCGGCAGCA--C
65 GGAGCTCATTCCATGTCTAAGCCCCAGACAGACCGAGGGTTGTGGCAGCGGGATCGACAGCATGC
* *
24524499 ACAGAGGGGATCGAGCCAATCCCCAACTTG
130 A-AG-GGGGATCGGGCCAATCCCCGACTTG
* * *
24524529 CGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACACTCGTTTCA-TGGGTT
1 CGCATTATGCCTCTTCGATCGGCTCAGTGCCCGCACACCCGTTT-AGTGGGTT
24524581 TACATATGAA
Statistics
Matches: 289, Mismatches: 68, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 9 0.03
158 176 0.61
159 97 0.34
160 6 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (157 bp):
CGCATTATGCCTCTTCGATCGGCTCAGTGCCCGCACACCCGTTTAGTGGGTTACTTAGGCATACG
GAGCTCATTCCATGTCTAAGCCCCAGACAGACCGAGGGTTGTGGCAGCGGGATCGACAGCATGCA
AGGGGGATCGGGCCAATCCCCGACTTG
Found at i:24524416 original size:158 final size:157
Alignment explanation
Indices: 24524177--24525265 Score: 574
Period size: 158 Copynumber: 6.7 Consensus size: 157
24524167 TGGGACCGAT
* * * * * **
24524177 AGCATGCAAAGGGGGACCGGGCCGATCCCTGACTTGCGCATTATGCCTCTTCGATCGGTTCAGTG
1 AGCATGC--AGGGGGATCGGGTCAATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTCAGCA
* *
24524242 CCCGCACGCTCGTTTCGTGGGTTGACATATGCATACGGAGTTCATTCCCAGTCTGAGATCAGACC
64 CCCGCACACTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTGAGATCAGACC
* *
24524307 GGACCAAGGGTTGCGGTAACAAGATCGAC
129 GGACCGAGGGTTGCGGTAGCAAGATCGAC
* * * *
24524336 AGCATGCAGGGGGAATCGGGTCAATCCCCGACTTGTGCATTCTGCCTCTTCGATCGGCTGAGTAC
1 AGCATGCAGGGGG-ATCGGGTCAATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTCAGCAC
* * * * * * * **
24524401 CCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATT-CCATGTCTAAGCCCTAGA-
65 CCGCACACTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCA-GTCTGAGATC-AGAC
* * * ** *
24524464 CAGACCGAGGGTTGTGGCAGCGGGATCGGC
128 CGGACCGAGGGTTGCGGTAGCAAGATCGAC
** * * * * *
24524494 AGCACACAGAGGGGATCGAGCCAATCCCCAACTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGC
1 AGCATGCAG-GGGGATCGGGTCAATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTCAGCAC
* * * * * * * **
24524559 CCGCACACTCGTTTCATGGGTTTACATATGAATATGGAGTTCATTCCCAGTTTGGGATTGGACCG
65 CCGCACACTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTGAGATCAGACCG
* *
24524624 GACCGAGGGTTACGATAGCAAGATCGAC
130 GACCGAGGGTTGCGGTAGCAAGATCGAC
* * * * * * *
24524652 AGCATGCAGGAGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCAC
1 AGCATGCAGG-GGGATCGGGTCAATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTCAGCAC
* ** * * * *
24524717 CCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAG
65 CCGCACACTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTGAG-AT-CAGA-
* *** * ** * * *
24524782 TTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGAC
127 -CCGGACCGAGGGT-TG--CGG-T-AG-C--A-AGAT-CGAC
* * * ** * *
24524824 AGCAGGATCGGTAGCACGTAGCGGGGACCGGGTCGATCCTCGACTTATGCATTCTGCCTCTACGA
1 AGC---A----T-G--C--AG-GGGGATCGGGTCAATCCCCGACTTGCGCATTATGCCTCTTCGA
* * * * * * * * * *
24524889 TCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATT-CCATGTC
53 TCGGCTCAGCACCCGCACACTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCA-GTC
* ** * * ** * * **
24524953 TAAGCCCCAG-CCAGACCGAGAGTTATGGTAGCAGGACCGGT
117 TGAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCGAC
* * * *
24524994 AGCATGCAGATGGGGACCGGG-CTGATCCCC-AGCTTGTGCATTATGCCTCTTCGGTCGGCTCAG
1 AGCATGCAG--GGGGATCGGGTC-AATCCCCGA-CTTGCGCATTATGCCTCTTCGATCGGCTCAG
* * ** * * * * *
24525057 TGA-CCGTATGCTCGTTTCGTGGGTTAACTTATGAATACGGAGTTCATTCCCAGTCTAAGATCAG
62 -CACCCGCACACTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTGAGATCAG
* * * * *
24525121 ACCAGACCAATGGTTACTGTAGCAAGATCGAC
126 ACCGGACCGAGGGTTGCGGTAGCAAGATCGAC
* * * * * * *
24525153 AGCACGTAGGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTTG-TCGGCTGAGC
1 AGCATGCA--GGGGGATCGGGTCAATCCCCGACTTGCGCATTATGCCTCT-TCGATCGGCTCAGC
* * *
24525217 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
63 ACCCGCACACTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCC
24525266 ATGTCTAAGC
Statistics
Matches: 703, Mismatches: 180, Indels: 94
0.72 0.18 0.10
Matches are distributed among these distances:
157 12 0.02
158 319 0.45
159 212 0.30
160 10 0.01
161 1 0.00
162 7 0.01
163 1 0.00
165 2 0.00
166 1 0.00
167 3 0.00
168 1 0.00
170 6 0.01
171 4 0.01
172 8 0.01
174 1 0.00
175 3 0.00
176 1 0.00
177 2 0.00
179 1 0.00
180 8 0.01
182 1 0.00
183 6 0.01
184 92 0.13
185 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
AGCATGCAGGGGGATCGGGTCAATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTCAGCACC
CGCACACTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTGAGATCAGACCGG
ACCGAGGGTTGCGGTAGCAAGATCGAC
Found at i:24524773 original size:316 final size:316
Alignment explanation
Indices: 24523957--24524760 Score: 923
Period size: 316 Copynumber: 2.5 Consensus size: 316
24523947 CAGTCTAAGC
* * * * * ** * * *
24523957 ATACAGAGTTCATTCCCAGTCTAAAATCAGACCGAACCGAGTATTGCGGTAGCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTGAGATCAGACCGGACCAAGGGTTACGATAGCAAGATCGACAGC
*** * * * * * * * * **
24524022 ACATAGGAGGGACTGAGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTGCTTG
66 ATGCAGGAGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTACCCG
* *
24524087 CACGCCCGTTTAGTGGGTT-ACCTTAGGCATACGGAGCTCATTCCATGTCTAAGCCCCAGCTGCA
131 CACGCCCGTTTCGTGGGTTGA-CTTAGGCATACGGAGCTCATTCCATGTCTAAGCCCCAGCAGCA
* * * * * **
24524151 TCGAGGGTTGTGGCAGTGGGACCGATAGCATGCAAAGGGGGACCGGGCCGATCCCTGACTTGCGC
195 CCGAGGGTTGTGGCAGCGGGACCGACAGCA-GCAAAGGGGGACCGAGCCAATCCCCAACTTGCGC
* * * * *
24524216 ATTATGCCTCTTCGATCGGTTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACATATGC
259 ATTATGCCTCTTCGATCGGCTCAGCGCCCGCACACTCGTTTCATGGGTTGACATATGA
* * *
24524274 ATACGGAGTTCATTCCCAGTCTGAGATCAGACCGGACCAAGGGTTGCGGTAACAAGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTGAGATCAGACCGGACCAAGGGTTACGATAGCAAGATCGACAGC
* * * * *
24524339 ATGCAGG-GGGAATCGGGTCAATCCCCGACTTGTGCATTCTGCCTCTTCGATCGGCTGAGTACCC
66 ATGCAGGAGGG-ACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTACCC
* * * * *
24524403 GCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTAGACAG-
130 GCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCATGTCTAAGCCCCAG-CAGC
* * * *
24524467 ACCGAGGGTTGTGGCAGCGGGATCGGCAGCA-CACAGAGGGGATCGAGCCAATCCCCAACTTGCG
194 ACCGAGGGTTGTGGCAGCGGGACCGACAGCAGCAAAG-GGGGACCGAGCCAATCCCCAACTTGCG
* *
24524531 CATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACACTCGTTTCATGGGTTTACATATGA
258 CATTATGCCTCTTCGATCGGCTCAGCGCCCGCACACTCGTTTCATGGGTTGACATATGA
* * * ** *
24524590 ATATGGAGTTCATTCCCAGTTTGGGATTGGACCGGACCGAGGGTTACGATAGCAAGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTGAGATCAGACCGGACCAAGGGTTACGATAGCAAGATCGACAGC
* *
24524655 ATGCAGGAGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCG
66 ATGCAGGAGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTACCCG
* * * *
24524720 TATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
131 CACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCAT
24524761 CCCCAATCTA
Statistics
Matches: 406, Mismatches: 76, Indels: 11
0.82 0.15 0.02
Matches are distributed among these distances:
315 4 0.01
316 220 0.54
317 180 0.44
318 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (316 bp):
ATACGGAGTTCATTCCCAGTCTGAGATCAGACCGGACCAAGGGTTACGATAGCAAGATCGACAGC
ATGCAGGAGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTACCCG
CACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCATGTCTAAGCCCCAGCAGCAC
CGAGGGTTGTGGCAGCGGGACCGACAGCAGCAAAGGGGGACCGAGCCAATCCCCAACTTGCGCAT
TATGCCTCTTCGATCGGCTCAGCGCCCGCACACTCGTTTCATGGGTTGACATATGA
Found at i:24524782 original size:26 final size:26
Alignment explanation
Indices: 24524746--24524798 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24524736 GTTGACTTAG
*
24524746 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
24524772 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
24524798 G
1 G
24524799 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:24525080 original size:159 final size:160
Alignment explanation
Indices: 24524846--24525276 Score: 414
Period size: 159 Copynumber: 2.7 Consensus size: 160
24524836 AGCACGTAGC
* ** * * * * * *
24524846 GGGGACCGGGTCGATCCTCGACTTATGCATTCTGCCTCTAC-GATCGACTGAGCGCCCGCACGCC
1 GGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCT-CTGGTCGGCTCAGCACCCGCACGCT
* * * * *
24524910 CGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-CCAGACCGA-G
65 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAATG
* ** * *
24524973 AGTTA-TGGTAGCAGGACCGGTAGCATGCAGAT
130 -GTTACT-GTAGCAAGACCGACAGCACGCAGAG
* * * *
24525005 GGGGACCGGG-CTGATCCCC-AGCTTGTGCATTATGCCTCT-TCGGTCGGCTCAGTGA-CCGTAT
1 GGGGACCGGGTC-GATCCCCGA-CTTGCGCATTATGCCTCTCT-GGTCGGCTCAG-CACCCGCAC
** * * *
24525066 GCTCGTTTCGTGGGTTAACTTATGAATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACC
62 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACC
* * *
24525129 AATGGTTACTGTAGCAAGATCGACAGCACGTAGGG
126 AATGGTTACTGTAGCAAGACCGACAGCACGCAGAG
* * *
24525164 GGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTTGTCGGCTGAGCACCCGCACGCTC
1 GGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCTGGTCGGCTCAGCACCCGCACGCTC
24525229 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
24525277 TACGGAGCTC
Statistics
Matches: 217, Mismatches: 40, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
158 9 0.04
159 199 0.92
160 9 0.04
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (160 bp):
GGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCTGGTCGGCTCAGCACCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAATGG
TTACTGTAGCAAGACCGACAGCACGCAGAG
Found at i:24525298 original size:26 final size:26
Alignment explanation
Indices: 24525248--24525300 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24525238 GTTGGCTTAG
* *
24525248 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24525274 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24525300 G
1 G
24525301 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24526011 original size:26 final size:26
Alignment explanation
Indices: 24525981--24526033 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24525971 GTTGACTTAG
* *
24525981 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
24526007 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24526033 G
1 G
24526034 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24526378 original size:26 final size:26
Alignment explanation
Indices: 24526349--24526401 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24526339 ATTGACTTAG
*
24526349 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
24526375 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24526401 G
1 G
24526402 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:24527392 original size:26 final size:26
Alignment explanation
Indices: 24527353--24527405 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24527343 GTTGACTTAG
*
24527353 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
*
24527379 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
24527405 G
1 G
24527406 ATCAAATCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:24527750 original size:26 final size:26
Alignment explanation
Indices: 24527721--24527773 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24527711 GCTGACTTAG
24527721 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
24527747 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24527773 G
1 G
24527774 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24528222 original size:26 final size:26
Alignment explanation
Indices: 24528182--24528234 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24528172 GTTGGCTTAG
* *
24528182 GCATACAGTGTTCATT-CCATGTCTAA
1 GCATACAGAGCTCATTCCCA-GTCTAA
24528208 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
24528234 G
1 G
24528235 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:24529291 original size:26 final size:26
Alignment explanation
Indices: 24529260--24529312 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24529250 GTTGACTTAG
* *
24529260 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTATAA
*
24529286 GCATACAGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATCCCCAGTATAA
24529312 G
1 G
24529313 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTATAA
Found at i:24529641 original size:26 final size:26
Alignment explanation
Indices: 24529591--24529643 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24529581 GTTGGCTTAG
* *
24529591 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24529617 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24529643 G
1 G
24529644 ATTTTGATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24530323 original size:26 final size:26
Alignment explanation
Indices: 24530287--24530344 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
24530277 CGTGGGTTGA
*
24530287 CTAAGGCATACGGAGTTCA-TCCTCAGT
1 CTAA-GCATACGAAGTTCATTCC-CAGT
24530314 CTAAGCATACGAAGTTCATTCCCAGT
1 CTAAGCATACGAAGTTCATTCCCAGT
24530340 CTAAG
1 CTAAG
24530345 ATCAGATTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 22 0.76
27 7 0.24
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
CTAAGCATACGAAGTTCATTCCCAGT
Found at i:24531165 original size:157 final size:156
Alignment explanation
Indices: 24530686--24531187 Score: 413
Period size: 160 Copynumber: 3.2 Consensus size: 156
24530676 CCCAGTCTAA
* * * ** * * **
24530686 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTGCGACAGCCGGATAGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG-CGGATCGACA
* * * * * * * *
24530751 GCACGTAAGGGGAACCAGGCCGATCCCC-AGCTTGCGTATTCTGCCTCTCTGGCTGGCTGAGTGC
65 GCACGTAGGGGGGACC-GGGCGATCCCCGA-CTTGCGTATTCTGCCTCTCAGACCGACTGAGCGC
24530815 CCGCACGC-CTGTTTCGTGGGTTGACTTAG
128 CCGCACGCTC-GTTTCGTGGGTTGACTTAG
* * * ** * * * * * *
24530844 GCATAGGGAGCTCATTCCAAGTCTAAGCCCTAG-CCAGACCGAAGCTTGGGGTAGCGAGACCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAGCG-GATCGAC
* * * ** * * * *
24530908 AGCACGCAGAGGGGGACCCGGGCTGATCCTCGGCTTATGCATTATGCCTCTTAGACC-AGCTCAG
64 AGCACGTAG-GGGGGA-CCGGGC-GATCCCCGACTTGCGTATTCTGCCTCTCAGACCGA-CTGAG
** * *
24530972 CGCCCGCACGCTTATTTCGTGGCTTGACTTAT
125 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
24531004 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC-GGATCGACA
* * *
24531069 GCACGTAGGGGGGA-TGGGTCGATCCCCGACTTGCGTATTCTACCTCTCCGACCGACTGAGCGCC
65 GCACGTAGGGGGGACCGGG-CGATCCCCGACTTGCGTATTCTGCCTCTCAGACCGACTGAGCGCC
* *
24531133 CGCACGCTCGTTTCATGGGTTGCCTTAG
129 CGCACGCTCGTTTCGTGGGTTGACTTAG
*
24531161 GCATATGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
24531188 TATACGGAGC
Statistics
Matches: 259, Mismatches: 72, Indels: 27
0.72 0.20 0.08
Matches are distributed among these distances:
156 3 0.01
157 80 0.31
158 49 0.19
159 17 0.07
160 109 0.42
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCGGATCGACAG
CACGTAGGGGGGACCGGGCGATCCCCGACTTGCGTATTCTGCCTCTCAGACCGACTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAG
Found at i:24532269 original size:26 final size:26
Alignment explanation
Indices: 24532221--24532273 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24532211 GTTGACTTAG
* *
24532221 GCATACGGAGTTTATCTCTAGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
24532247 GCATACGGAGTTCAT-TCCCAGTCTAA
1 GCATACGGAGTTCATCT-CCAGTCTAA
24532273 G
1 G
24532274 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:24532522 original size:159 final size:159
Alignment explanation
Indices: 24532312--24532729 Score: 448
Period size: 159 Copynumber: 2.6 Consensus size: 159
24532302 AGGATCGACT
** *
24532312 GATCCCCGGCTTGCGCATTCTGCCTCTCCAATCGGTTGAGCGCCCGTACGCTCGTTTCATGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTT
* * * * * * *
24532377 GGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGC-G
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGACAGCAG
* * * *
24532440 AGACCGGCAGCACGCAGAGGGGGACTAGGTC
131 -GACCGACAGCACACAG-GAGGGACCAGGTC
* * ** * * *
24532471 GATCCCTGGCTTGCGCATTATGCCTCTTTGGTCGGCTCAGCACCCGTACGCTCGTTTTATGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTT
* * * ***
24532536 GACTTATGCATACGGAGTTCATTCC-TAATCTAAG-ATTGGACCAGACCGAGGGTTGCGACAGCA
66 GGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCGAGGGTTGCGACAGCA
* *
24532599 GGATCGACAGCACACAGGAGGGACCGGGTC
130 GGACCGACAGCACACAGGAGGGACCAGGTC
* * * * * * * *
24532629 GATCCCCGACTTGTGTATTCTGCCTCTCCGGTTGACTGAGCGCCCGCACGATCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTT
24532694 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
24532730 TACGGAGCTC
Statistics
Matches: 207, Mismatches: 47, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
158 91 0.44
159 115 0.56
160 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.25
Consensus pattern (159 bp):
GATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGCGACAGCAG
GACCGACAGCACACAGGAGGGACCAGGTC
Found at i:24532752 original size:26 final size:26
Alignment explanation
Indices: 24532701--24532753 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24532691 GTTGGCTTAG
* *
24532701 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATGACTAA
24532727 GCATACGGAGCTCATTCCCA-GACTAA
1 GCATACGGAGCTCATT-CCATGACTAA
24532753 G
1 G
24532754 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATGACTAA
Found at i:24533603 original size:137 final size:137
Alignment explanation
Indices: 24533350--24533606 Score: 370
Period size: 137 Copynumber: 1.9 Consensus size: 137
24533340 ACCACCCGTT
* * * * *
24533350 CGATCCTCGGCTTGTGCATCCTGTCTCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCTGCCTCTCCGGTCGGCTGAGCACCCGCACACTCGTTTCGTGGGT
** * *
24533415 TGACTTAGGCATACGGAGTACATTCCAAGTCTATGCCCCAATCGAATCGACAGCGCACAGGGGGG
66 TGACTTAGGCATACGGAGTACATTCCAAGTCTAAACCCCAACCGAACCGACAGCGCACAGGGGGG
24533480 ACTGGGC
131 ACTGGGC
* *
24533487 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCTGCACACTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCTGCCTCTCCGGTCGGCTGAGCACCCGCACACTCGTTTCGTGGGT
* * * * *
24533552 TGGCTTGGGCATACGGAGTACATTTCATGTCTAAACCCCAGCCGAACCGACAGCG
66 TGACTTAGGCATACGGAGTACATTCCAAGTCTAAACCCCAACCGAACCGACAGCG
24533607 GGATCGGCAG
Statistics
Matches: 104, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
137 104 1.00
ACGTcount: A:0.17, C:0.32, G:0.28, T:0.23
Consensus pattern (137 bp):
CGATCCCCGGCTTGCGCATCCTGCCTCTCCGGTCGGCTGAGCACCCGCACACTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTACATTCCAAGTCTAAACCCCAACCGAACCGACAGCGCACAGGGGGG
ACTGGGC
Found at i:24533752 original size:26 final size:26
Alignment explanation
Indices: 24533723--24533775 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24533713 GTTGACTTAG
* *
24533723 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
*
24533749 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
24533775 G
1 G
24533776 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:24535279 original size:26 final size:26
Alignment explanation
Indices: 24535249--24535301 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24535239 GTTGACTTAG
24535249 GCATAC-ACAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
24535275 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24535301 G
1 G
24535302 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24535576 original size:159 final size:160
Alignment explanation
Indices: 24535348--24535648 Score: 356
Period size: 159 Copynumber: 1.9 Consensus size: 160
24535338 CAGCATGTAG
* * ** * * * *
24535348 GGGGGATCGGGCTGATCCTCGGCTTCCACATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCC
1 GGGGGATCGAGCCGATCCTCGAATTCCACATTATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCC
* * ** * *
24535413 CA-TTTCGTGGGTTGGCTTAGGCATGGGGAGCTCATT-CCATGTCTAAGCCCCAG-TCGGACCGA
66 CATTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCA-GTCTAAG-ACCAGACCGGACCGA
24535475 GGGTTGTGGCAGCAAGACCAGCAACACACAGA
129 GGGTTGTGGCAGCAAGACCAGCAACACACAGA
* * * * *
24535507 GGGGGATCGAGCCGATCCTCGAATTGCGCATTATGCCTCTTCAGTCGGCTCAGCGCCCGCACGCT
1 GGGGGATCGAGCCGATCCTCGAATTCCACATTATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCC
* * *
24535572 CATTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
66 CATTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGACCAGACCGGACCGAGG
*
24535637 GTTTTGGCAGCA
131 GTTGTGGCAGCA
24535649 GGATCGACAG
Statistics
Matches: 116, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
159 57 0.49
160 56 0.48
161 3 0.03
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (160 bp):
GGGGGATCGAGCCGATCCTCGAATTCCACATTATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCC
CATTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGACCAGACCGGACCGAGG
GTTGTGGCAGCAAGACCAGCAACACACAGA
Found at i:24535706 original size:160 final size:158
Alignment explanation
Indices: 24535275--24535778 Score: 408
Period size: 160 Copynumber: 3.2 Consensus size: 158
24535265 CCCAGTCTAA
* * * * * * * *
24535275 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTGCGACAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * *
24535340 GCATGTA-GGGGGGATCGGGCTGATCCTCGGCTTCCACATTCTGCCTCTCCGGCCGGCTGAGTGC
66 GCACGTAGGGGGGGATC-GGCCGATCCTCGACTTGCACATTCTGCCTCTCCAGCCGGCTCAGCGC
* *
24535404 CCGCACGCCCATTTCGTGGGTTGGCTTAG
130 CCGCACGCCCATTTCATGGGTTGACTTAG
** * ** * * *
24535433 GCATGGGGAGCTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAAGA-CCA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA
* ** * * * * * *
24535495 GCAACACACAGAGGGGGATCGAGCCGATCCTCGAATTGCGCATTATGCCTCTTCAGTCGGCTCAG
64 -CAGCACGTAGGGGGGGATCG-GCCGATCCTCGACTTGCACATTCTGCCTCTCCAGCCGGCTCAG
* *
24535560 CGCCCGCACGCTCATTTTCATGGGTTGACTTAT
127 CGCCCGCACGCCCA-TTTCATGGGTTGACTTAG
*
24535593 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
24535658 GCACGTAGGGGGGGACCCGGTCAAT-CTCTGACTTGCACATTCTGCCTCTCCAACCCGCTGAGCG
66 GCACGTAGGGGGGGA-TCGGCCGATCCTC-GACTTGCACATTCTGCCTCTCCAGCCGGCTCAGCG
** * * * ** **
24535722 CTTGCACACTCGTTTTGTGGGTTGGTTTAG
129 CCCGCACGCCCATTTCATGGGTTGACTTAG
*
24535752 GCATACGGAGTTTATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
24535779 CATACGGAGC
Statistics
Matches: 264, Mismatches: 70, Indels: 23
0.74 0.20 0.06
Matches are distributed among these distances:
157 3 0.01
158 48 0.18
159 96 0.36
160 110 0.42
161 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGTAGGGGGGGATCGGCCGATCCTCGACTTGCACATTCTGCCTCTCCAGCCGGCTCAGCGCC
CGCACGCCCATTTCATGGGTTGACTTAG
Found at i:24535781 original size:26 final size:26
Alignment explanation
Indices: 24535752--24535804 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24535742 GTTGGTTTAG
* *
24535752 GCATACGGAGTTTATTCC-ATGTCTAA
1 GCATACGGAGCTCATTCCTA-GTCTAA
24535778 GCATACGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCTAGTCTAA
24535804 G
1 G
24535805 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCTAGTCTAA
Found at i:24536856 original size:25 final size:26
Alignment explanation
Indices: 24536828--24536879 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24536818 GTTGACTTAG
*
24536828 GCATA-GGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24536853 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24536879 G
1 G
24536880 ATCAGACTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24537143 original size:159 final size:159
Alignment explanation
Indices: 24536853--24537355 Score: 488
Period size: 159 Copynumber: 3.2 Consensus size: 159
24536843 CCCAGTCTAA
* * * * *
24536853 GCATACGGAGTTCATTCC-TAGTCTAAGA-TCAGA-CTGAACCGAGGGTTGCGACAGCAGGATCG
1 GCATACGGAGTTCATTCCAT-GTCTAAGACTGA-ACCAG-ACCAAGGGTTGCGGCAGCAGGACCG
* ** * * * * *
24536915 ATAGCACGCAG-GGGGGACCGGGCCGAT-CCCCGACTTGTGCATTTTCCCTCTCCG-GTCGGCTA
63 ATAGCACGCAGAGGGGGACCCGATCGATCCCCCG-CTTGCGCATTATGCCTCT-CGAGCCGGCTT
*
24536977 AGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
126 AGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
24537011 GCATAGGGAGCTCATTCCATGTCTAATACCT-AACCAGACCAAGGGTTGTGGCAGCGGGACCGGA
1 GCATACGGAGTTCATTCCATGTCTAAGA-CTGAACCAGACCAAGGGTTGCGGCAGCAGGACC-GA
*
24537075 -AGCACGTAGAGGGGGACCCGATCGATCCCCCGCTTGCGCATTATGCCTCTTCGA-CCGGCTTAG
64 TAGCACGCAGAGGGGGACCCGATCGATCCCCCGCTTGCGCATTATGCCTC-TCGAGCCGGCTTAG
* * ** * *
24537138 CGCCCGTACGCTTATTTCGTGGGTTGACTTAT
128 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
24537170 GCATACGGAGTTCATTGCCA-GTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGACTGAACCAGACCAAGGGTTGCGGCAGCAGGACCGAT
* * * * * * * *
24537234 AGCACGCAGGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGCC-GATTGAGT
65 AGCACGCAGAGGGGGACCCGATCGATCCCCCGCTTGCGCATTATGCCTCTCGAGCCGGCTT-AGT
*
24537298 GCCCGCTCGCTCGTTTCGTGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
24537329 GCATACGGAGTTCATTCCATGTGTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
24537356 CATACAGAGC
Statistics
Matches: 280, Mismatches: 50, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
158 63 0.22
159 207 0.74
160 10 0.04
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGACTGAACCAGACCAAGGGTTGCGGCAGCAGGACCGATA
GCACGCAGAGGGGGACCCGATCGATCCCCCGCTTGCGCATTATGCCTCTCGAGCCGGCTTAGTGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24537381 original size:26 final size:26
Alignment explanation
Indices: 24537329--24537381 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24537319 GTTGGCTTAG
* * *
24537329 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACAGAGCTCATTCCATGTCTAA
24537355 GCATACAGAGCTCATTCCCA-GTCTAA
1 GCATACAGAGCTCATT-CCATGTCTAA
24537381 G
1 G
24537382 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCATGTCTAA
Found at i:24538079 original size:26 final size:26
Alignment explanation
Indices: 24538050--24538102 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24538040 GTTGACTTAG
*
24538050 GCATACGGAGTTCATGCCCAGTCTAA
1 GCATACAGAGTTCATGCCCAGTCTAA
**
24538076 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATGCCCAGTCTAA
24538102 G
1 G
24538103 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATGCCCAGTCTAA
Found at i:24538435 original size:26 final size:26
Alignment explanation
Indices: 24538405--24538457 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24538395 GTTGAGTTAG
24538405 GCATACGG-AGTTCATCCCCAGTCTAA
1 GCATA-GGAAGTTCATCCCCAGTCTAA
*
24538431 GCATAGGAAGTTCATTCCCAGTCTAA
1 GCATAGGAAGTTCATCCCCAGTCTAA
24538457 G
1 G
24538458 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAGGAAGTTCATCCCCAGTCTAA
Found at i:24538636 original size:355 final size:343
Alignment explanation
Indices: 24538010--24538774 Score: 863
Period size: 355 Copynumber: 2.2 Consensus size: 343
24538000 CCTCTCTGGT
* * * *
24538010 CGGCTGAGCGCCCGTACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATGCCCAGTCTA
1 CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * * **
24538075 AGCATACAGAGTTCATTTCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGCAGCATGATCGGT
66 AGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGCAGGATCGAC
* * * ** * **
24538140 AGCACGCAAGGGGGACTGGACAGGTCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGTTGAGTGC
131 AGCACGCAAGGGGGACCGGACAGATCCTCGACTTGCACATTCTGCCTCTCCAACCGGCTGAGCAC
* * *
24538205 CCAAACGCTCGTTTTGTGGGTCGGCTTAGGCATATGGAGTACATTCCAAGTCTAAGCCCCAATCG
196 CCAAACGCTCATTTCGTGGGTCGGCTTAGGCATAGGGAGTACATTCCAAGTCTAAGCCCCAATCG
* *
24538270 GACCGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGACAGCACGTAGAGGGGGACCGGGCTGA
261 AACCGAGGGTTGT------------GGTAACGGGATCGACAGCACGTAGAGGGGGACCGGGCTGA
*
24538335 TCCCTGGCTTGCGCATTATGACTCTCCGAC
314 TCCCTGGCTTACGCATTATGACTCTCCGAC
* *
24538365 CGGCTGAGCGCTCGTACGCTCGTTTCATGGGTTGAGTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * *
24538430 AGCATA-GGAAGTTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTGCGATAGCAGGATCGA
66 AGCATACAG-AGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGCAGGATCGA
* * * * *
24538494 CAGCACG-TAGAGGGGACCGGGCCGATCCTCGGCTTGCACATTCTGCCTCTTCAACCGGCTGAGC
130 CAGCACGCAAG-GGGGACCGGACAGATCCTCGACTTGCACATTCTGCCTCTCCAACCGGCTGAGC
* * * *
24538558 ACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAG
194 ACCCAAACGCTCATTTCGTGGGTCGGCTTAGGCATAGGGAG-TACATTCCAAGTCTAAGCCCCAA
* * * *
24538622 TCGAATCGAGGGTTGTGGTAACGGGATCGACAGTACGTAGAGGGGGACTGGGCTGATCCTTGGCT
258 TCGAACCGAGGGTTGTGGTAACGGGATCGACAGCACGTAGAGGGGGACCGGGCTGATCCCTGGCT
* *
24538687 TACGCATTATGCCTCTTCGAC
323 TACGCATTATGACTCTCCGAC
* * * * * * * * *
24538708 CAGCTCAGCACCCGCACGCTTGTTTCGTAGGTTG-GCTTATGCATACAGAGTTCATTCCCAGTCT
1 CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGAG-TTAGGCATACGGAGTTCATCCCCAGTCT
24538772 AAG
65 AAG
24538775 ATCGGACCGG
Statistics
Matches: 349, Mismatches: 57, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
342 1 0.00
343 117 0.34
354 3 0.01
355 227 0.65
356 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (343 bp):
CGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGCAGGATCGAC
AGCACGCAAGGGGGACCGGACAGATCCTCGACTTGCACATTCTGCCTCTCCAACCGGCTGAGCAC
CCAAACGCTCATTTCGTGGGTCGGCTTAGGCATAGGGAGTACATTCCAAGTCTAAGCCCCAATCG
AACCGAGGGTTGTGGTAACGGGATCGACAGCACGTAGAGGGGGACCGGGCTGATCCCTGGCTTAC
GCATTATGACTCTCCGAC
Found at i:24538742 original size:159 final size:158
Alignment explanation
Indices: 24538487--24538774 Score: 389
Period size: 159 Copynumber: 1.8 Consensus size: 158
24538477 TGCGATAGCA
* * *
24538487 GGATCGACAGCACGTAGAGGGGACCGGGCCGATCCTCGGCTTGCACATTCTGCCTCTTCAACCGG
1 GGATCGACAGCACGTAGAGGGGACCGGGCCGATCCTCGGCTTACACATTATGCCTCTTCAACCAG
* * **
24538552 CTGAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATT-CCATGTCTAAG
66 CTCAGCACCCACACGCTCATTTCGTAGGTTGGCTTAGGCATACAGAGCTCATTCCCA-GTCTAAG
24538616 CCCCAGTCGAATCGAGGGTTGTGGTAACG
130 CCCCAGTCGAATCGAGGGTTGTGGTAACG
* * * * * *
24538645 GGATCGACAGTACGTAGAGGGGGACTGGGCTGATCCTTGGCTTACGCATTATGCCTCTTCGACCA
1 GGATCGACAGCACGTAGA-GGGGACCGGGCCGATCCTCGGCTTACACATTATGCCTCTTCAACCA
* ** * *
24538710 GCTCAGCACCCGCACGCTTGTTTCGTAGGTTGGCTTATGCATACAGAGTTCATTCCCAGTCTAAG
65 GCTCAGCACCCACACGCTCATTTCGTAGGTTGGCTTAGGCATACAGAGCTCATTCCCAGTCTAAG
24538775 ATCGGACCGG
Statistics
Matches: 110, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
158 17 0.15
159 90 0.82
160 3 0.03
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
GGATCGACAGCACGTAGAGGGGACCGGGCCGATCCTCGGCTTACACATTATGCCTCTTCAACCAG
CTCAGCACCCACACGCTCATTTCGTAGGTTGGCTTAGGCATACAGAGCTCATTCCCAGTCTAAGC
CCCAGTCGAATCGAGGGTTGTGGTAACG
Found at i:24538789 original size:159 final size:159
Alignment explanation
Indices: 24538439--24538932 Score: 503
Period size: 158 Copynumber: 3.1 Consensus size: 159
24538429 AAGCATAGGA
** * * *
24538439 AGTTCATTCCCA-GTCTAAGATCGAACTAGACCGAGGGTTGCGATAGCAGGATCGACAGCACGTA
1 AGTTCATT-CCATGTCTAAGATCGAACCGGATCGAGGGTTGTGATAACAGGATCGACAGCACGTA
* * * *
24538503 GA-GGGGACCGGGCCGATCCTCGGCTTGCACATTCTGCCTCTTCAACCGGCTGAGCACCCACACG
65 GAGGGGGACAGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCACACG
* **
24538567 CTCATTTCGTGGGTTGGCTTAGGCATAGGG
130 CTCGTTTCGTGGGTTGGCTTAGGCATACAG
* ** * ** * * * *
24538597 AGCTCATTCCATGTCTAAGCCCCAGTCGAATCGAGGGTTGTGGTAACGGGATCGACAGTACGTAG
1 AGTTCATTCCATGTCTAAGATCGAACCGGATCGAGGGTTGTGATAACAGGATCGACAGCACGTAG
* * * * * * *
24538662 AGGGGGACTGGGCTGATCCTTGGCTTACGCATTATGCCTCTTCGACCAGCTCAGCACCCGCACGC
66 AGGGGGACAGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCACACGC
* * *
24538727 TTGTTTCGTAGGTTGGCTTATGCATACAG
131 TCGTTTCGTGGGTTGGCTTAGGCATACAG
* * ** * *
24538756 AGTTCATTCCCA-GTCTAAGATCGGACCGGATCGAGGGCTGTGACCATAGGATCGACAGCATGTA
1 AGTTCATT-CCATGTCTAAGATCGAACCGGATCGAGGGTTGTGATAACAGGATCGACAGCACGTA
* * * * * * * *
24538820 G-GGGGGACAGGG-TCGATCCCCGACTTGCGCATTCTGCTTTTTCGACCGGCTGAGCGCTCTCAT
65 GAGGGGGACAGGGCT-GATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCACAC
*
24538883 GCTCGTTTCGTGGGTTAGCTTAGGCATACAG
129 GCTCGTTTCGTGGGTTGGCTTAGGCATACAG
24538914 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
24538933 CATACGGAGC
Statistics
Matches: 266, Mismatches: 65, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
157 7 0.03
158 135 0.51
159 121 0.45
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
AGTTCATTCCATGTCTAAGATCGAACCGGATCGAGGGTTGTGATAACAGGATCGACAGCACGTAG
AGGGGGACAGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCACACGC
TCGTTTCGTGGGTTGGCTTAGGCATACAG
Found at i:24540853 original size:26 final size:26
Alignment explanation
Indices: 24540824--24540876 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24540814 GTTGACTTAG
24540824 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24540850 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24540876 G
1 G
24540877 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24541552 original size:368 final size:362
Alignment explanation
Indices: 24540787--24542154 Score: 1388
Period size: 368 Copynumber: 3.8 Consensus size: 362
24540777 CTCTGGTCGA
* *
24540787 CTGAGCGCCCGCACGCTTGTATCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * ** *
24540852 ATACGGGGTTCATTCCCAGTCTAAGATC-AGACCAGATCAAGGGTTGCGGGAGCAGGATCGGCAG
66 ATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGATCAAGGGTTACGATAGCAGGATCGACAG
* * * ** *
24540916 CATGCAGGGAGGATCGGGCTGATCCCCAGTTTATGCATTCTGCCTC-TC-CGGCTGTG-CCCGCA
130 CACGCAGGGAGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTTCGCGGCTGAGACCCGCA
* * ** *
24540978 CGCTCATTTCATGGGTTGGCTTAGGCATACGGTGTACATTCCATGTCTAAGCCCCAATCGGACTG
195 TGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGACCG
* * * * *
24541043 AGGGTTGTGGCAGCAAGACCGACAGCGAGATCGACAGCACGTAGAGAGGGA-CATGGCTGATCCT
260 AGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGGGGGACCA-GGCTGATCCC
* * * * *
24541107 CGGCTTGTGCATTATGCCTCTCCAGCCGGCCTCTCTGACCGG
324 CAGCTTGCGCATTATGCCTCT-C-G-TGGCCTCTCTGGCCAG
* * ** *
24541149 TTGAGCGCCCGTACGCTCGTTTCGGGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTGTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* ** *
24541214 ATACGAAGTTTGTTCCCAGTCTAAGATCGAACCAGATCAAGGGTTGCGATAGCAGGATCGACAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCAAGGGTTACGATAGCAGGATCGACAGC
* * ** *
24541279 ACGCAAGGAGGATCGGGCTGATCCCTGGCTTGCACATTCTGCCTCTTCGATCGGCTGAGCACCCG
131 ACGCAGGGAGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTTCG--CGGCTGAG-ACCCG
* * * * ** *
24541344 CATGCTCATTCCGTGGGTTGGCTTAGGCATATGAAGTACATTCCACATCTAAGCCCCAGCCAGAC
193 CATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGAC
* * * * * * * *
24541409 CGAAGGTTGTGTCAGCAGGGCCGTCAGCGGGATCGACAGCATGCATAGGGGGACCGGGTTGATCC
258 CGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGGGGGACCAGGCTGATCC
24541474 CCAGCTTGCGCATTATGCCTCTTCGGTTGGCCTCTCTGGCCAG
323 CCAGCTTGCGCATTATGCCTC-TC-G-TGGCCTCTCTGGCCAG
*
24541517 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * **
24541582 ATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCAAGGGTTACGGTAGCAGGATCGATGGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCAAGGGTTACGATAGCAGGATCGACAGC
* * * * * **
24541647 ACGTAGGGGGGACCGAGCCGATCCCTAGCTTGCGCATTCTGCCTCTTCGGCCGATTGAGTACCCG
131 ACGCAGGGAGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTTC-G-CGGCTGAG-ACCCG
* * *
24541712 CATGCTCGTTTCATGGGTTGGCTTAGGTATACGGAGTACATTCCATGT-TAAAGCCCTAGCCGGA
193 CATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCT-AAGCCCCAGCCGGA
* * * * * *
24541776 CCGAGGGTTATGGCAGCAGGACTGGCAGTGGGAT-GACAGCACGCAGAGGGGGATCAGACTGATC
257 CCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGGGGGACCAGGCTGATC
* *
24541840 CCCAGCTTGCGTATTATG-----CGT---CT-AC-GGCCAG
322 CCCAGCTTGCGCATTATGCCTCTCGTGGCCTCTCTGGCCAG
* * *
24541871 CTGAGCGTCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * * * * * * *
24541936 ATATGGAGTCCACTCCTAGTCTAAGATCGGACCGGATCGAGGGTTACGACAGTAAGATCGACAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCAAGGGTTACGATAGCAGGATCGACAGC
* * * * * * *
24542001 ACGCTGGGGGGACCGGGTTGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAG-CGTCC
131 ACGCAGGGAGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTTC-G-CGGCTGAGAC--CC
* * * * * ** * * *
24542065 GTACGCCCGTTTCGTGTTTTGGCTTAGGCTTAGGGAGCTA-ATTCCATGTCTAAGCCCCAGTCGG
192 GCATGCTCATTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAGCCGG
** * * *
24542129 AATGAAGGTTATGGCAGCGGGACCGA
256 ACCGAGGGTTGTGGCAGCAGGACCGA
24542155 TACCATGCAG
Statistics
Matches: 840, Mismatches: 151, Indels: 38
0.82 0.15 0.04
Matches are distributed among these distances:
352 1 0.00
354 237 0.28
355 4 0.00
356 2 0.00
359 1 0.00
360 1 0.00
361 1 0.00
362 151 0.18
363 3 0.00
366 7 0.01
367 42 0.05
368 387 0.46
369 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (362 bp):
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCAAGGGTTACGATAGCAGGATCGACAGC
ACGCAGGGAGGACCGGGCTGATCCCCAGCTTGCGCATTCTGCCTCTTCGCGGCTGAGACCCGCAT
GCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGACCGA
GGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGGGGGACCAGGCTGATCCCCA
GCTTGCGCATTATGCCTCTCGTGGCCTCTCTGGCCAG
Found at i:24541584 original size:26 final size:26
Alignment explanation
Indices: 24541554--24541606 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24541544 GTTGACTTAG
24541554 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
24541580 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24541606 G
1 G
24541607 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24542438 original size:26 final size:26
Alignment explanation
Indices: 24542409--24542461 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24542399 GTTGACTTAG
24542409 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
24542435 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24542461 G
1 G
24542462 AGCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24542594 original size:184 final size:184
Alignment explanation
Indices: 24542251--24542603 Score: 442
Period size: 184 Copynumber: 1.9 Consensus size: 184
24542241 GTTGACTTAT
* * * *
24542251 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCAAGGGTTGCGATAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGAGCAGACCAGACCAAGGGTTGCGACAGTAGGATCGACA
* * *
24542316 GCATGCAAGGGGGACCGAGCCGATCCCCGACTTGTACATTCTACCTCTATGGTCGACTGAGCACC
66 GCACGCAAGGGGGACCGAGCCGATCCCCGACTTGCACATTCTACCTCTATGGTCGACTGAACACC
* * *
24542381 CGCATGCACGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
131 CGCATACACGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * *
24542435 GCATATGGAGTTCATTCCCAGTCTAAGAGC-GAACCGGATCGAGGGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGAGCAG-ACCAGACCAAGGGTTGCGACAGTAGGATCGAC
** * * * * * * *
24542499 AGCACGCGGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGGTCGGCTGAACGC
65 AGCACGCAAGGGGGACCGAGCCGATCCCCGACTTGCACATTCTACCTCTATGGTCGACTGAACAC
*
24542564 CCG-A-ACACTGGTTTCGTAGGTTGGCTTAGGCATACGGAGT
130 CCGCATACAC--GTTTCGTAGGTTGACTTAGGCATACGGAGT
24542604 ACATTCACGT
Statistics
Matches: 142, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
182 3 0.02
183 2 0.01
184 137 0.96
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGAGCAGACCAGACCAAGGGTTGCGACAGTAGGATCGACA
GCACGCAAGGGGGACCGAGCCGATCCCCGACTTGCACATTCTACCTCTATGGTCGACTGAACACC
CGCATACACGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:24542941 original size:304 final size:304
Alignment explanation
Indices: 24542389--24542942 Score: 745
Period size: 304 Copynumber: 1.8 Consensus size: 304
24542379 CCCGCATGCA
**
24542389 CGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCC
1 CGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCC
* * * * * *
24542454 AGTCTAAGAGCGAACCGGATCGAGGGTTGCGACAGTAGGATCGACAGCACGCGGGGGGGATCGGG
66 AGTCTAAGAGCGAACAGGATCAAGGGTTGCGACAGTAGGATCAACAGCACGAGAGGGGGACCGGG
* * ** *
24542519 CCGATCCCCGACTTGCGCATTCTGCCTCTCTGGTCGGCTGAACGCCCGAACACTGGTTTCGTAGG
131 CCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAACACCCGAACACCCGTTTCATAGG
* *
24542584 TTGGCTTAGGCATACGGAGTACATTCACGTCTAAGCCCAAGTCAGATCGAGGGTTGTGGCAGCAG
196 TTGGCTTAGGCATACGGAGTACATTCACGTCTAAGCCCAAGCCAGACCGAGGGTTGTGGCAGCAG
24542649 GATCGGCAGCACGCAGAGAGGGACCGGGCTGATGCCTGCACCCT
261 GATCGGCAGCACGCAGAGAGGGACCGGGCTGATGCCTGCACCCT
* *
24542693 CGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCT
1 CGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCC
* * * * * *
24542758 AGTCTAAGATCGGATCAGGCT-AAGGGTTGTGGCAGTAGGATCAACAGCAC-ATAGGGGGACCGG
66 AGTCTAAGAGC-GAACAGGATCAAGGGTTGCGACAGTAGGATCAACAGCACGAGAGGGGGACCGG
** * * * * *
24542821 GGTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCGTTTCATGG
130 GCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAACACCCGAACACCCGTTTCATAG
* * * * *
24542886 GTTGGCTTAGGTATAGGGAGCT-CATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
195 GTTGGCTTAGGCATACGGAG-TACATT-CACGTCTAAGCCCAAGCCAGACCGAGGGTT
24542943 ATGCTAGTGG
Statistics
Matches: 212, Mismatches: 35, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
303 84 0.40
304 122 0.58
305 6 0.03
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (304 bp):
CGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCC
AGTCTAAGAGCGAACAGGATCAAGGGTTGCGACAGTAGGATCAACAGCACGAGAGGGGGACCGGG
CCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAACACCCGAACACCCGTTTCATAGG
TTGGCTTAGGCATACGGAGTACATTCACGTCTAAGCCCAAGCCAGACCGAGGGTTGTGGCAGCAG
GATCGGCAGCACGCAGAGAGGGACCGGGCTGATGCCTGCACCCT
Done.