Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 248 of 402
Found at i:24543982 original size:26 final size:26
Alignment explanation
Indices: 24543945--24543997 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
24543935 GTTGACTTAG
24543945 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
24543971 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
24543997 G
1 G
24543998 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:24544308 original size:26 final size:26
Alignment explanation
Indices: 24544278--24544330 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24544268 GTTGACTTAG
24544278 GCATACGGAATTCATCCCTAGTCTAA
1 GCATACGGAATTCATCCCTAGTCTAA
* *
24544304 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAATTCATCCCTAGTCTAA
24544330 G
1 G
24544331 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATCCCTAGTCTAA
Found at i:24544669 original size:25 final size:26
Alignment explanation
Indices: 24544634--24544685 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
24544624 GTTGACTTAG
* *
24544634 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
24544659 GCATACAGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
24544685 G
1 G
24544686 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:24545125 original size:158 final size:156
Alignment explanation
Indices: 24544659--24545158 Score: 440
Period size: 158 Copynumber: 3.2 Consensus size: 156
24544649 CCCAGTCTAA
** ** *
24544659 GCATACAGAGTTCATTCACA-GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAT
1 GCATACAGAGTTCATTC-CATGTCTAAGATCAGATTGGACCGAGGGTTGCAACAGCAGGATCGAC
* * * * *
24544723 AGCACGAAGGGGGGATCGGGTCGATCCCCGACTTACGCATTCTGCCTCTTCGACCGGCTAAGCGC
65 AGCACGAA-GGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTAAGCGC
*
24544788 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTT-GCTTAG
** * ** * * *
24544817 GCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-TCT-GACCCAGGGTTGTGGCAACGGC--GCT
1 GCATACAGAGTTCATTCCATGTCTAAG-ATCAGAT-TGGACCGAGGG-T-T-GCAACAGCAGGAT
* * * * * * * * *
24544878 -GGCAGCACGCAGAAGGGGACCTGGCCGATCCTCGGGTTGGGCATTATGCCTCTTCGATCGGCTC
61 CGACAGCACG-A-AGGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTA
* * * * * *
24544942 AGTGCCCACACGTTCATGTT-ATGGGTTGACTTAT
124 AGCGCCCGCACGCTCGT-TTCGTGGGTTG-CTTAG
* *
24544976 GCATACAAAGTTCATTTCCA-GTCTAAGATCAGATTGGATCGAGGGTTGCAACAGCAGGATCGAC
1 GCATACAGAGTTCA-TTCCATGTCTAAGATCAGATTGGACCGAGGGTTGCAACAGCAGGATCGAC
** * *
24545040 AGCACGTAAGGGGGACCAAATCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
65 AGCACG-AAGGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTAAGCGC
*
24545105 CCGCACGCTCGTTTCGTGGGTCGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGCTTAG
*
24545133 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
24545159 ACATATGGAG
Statistics
Matches: 259, Mismatches: 65, Indels: 37
0.72 0.18 0.10
Matches are distributed among these distances:
156 12 0.05
157 27 0.10
158 104 0.40
159 102 0.39
160 9 0.03
161 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCAGATTGGACCGAGGGTTGCAACAGCAGGATCGACA
GCACGAAGGGGGACCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGGCTAAGCGCCC
GCACGCTCGTTTCGTGGGTTGCTTAG
Found at i:24545903 original size:26 final size:26
Alignment explanation
Indices: 24545867--24545917 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24545857 TGACTTAGGC
24545867 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
* *
24545893 ATACGGAGTTCATTCTCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
24545918 ATTAAACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:24546109 original size:38 final size:38
Alignment explanation
Indices: 24546058--24546130 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
24546048 GCATGCAGAG
24546058 TACATTCCACATCTAAGCCCCAGTCAGACCGAGGGTTA
1 TACATTCCACATCTAAGCCCCAGTCAGACCGAGGGTTA
*
24546096 TACATTCCACATCTAAGCCCCAGTCGGACCGAGGG
1 TACATTCCACATCTAAGCCCCAGTCAGACCGAGGG
24546131 CTATGGCAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.27, C:0.33, G:0.21, T:0.19
Consensus pattern (38 bp):
TACATTCCACATCTAAGCCCCAGTCAGACCGAGGGTTA
Found at i:24546674 original size:26 final size:26
Alignment explanation
Indices: 24546638--24546690 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24546628 GTTGACTTAG
*
24546638 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCACTCCC-AGTCTAA
24546664 GCATACAGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
24546690 G
1 G
24546691 ATTGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:24546791 original size:368 final size:369
Alignment explanation
Indices: 24546096--24546880 Score: 891
Period size: 368 Copynumber: 2.1 Consensus size: 369
24546086 CCGAGGGTTA
* * * * **
24546096 TACATTCCACATCTAAGCCCCAGTCGGACCGAGGGCTATGGCAGTAGGACCGGTAGCGGGATCGA
1 TACATTCCACATCTAAGCCCCAGTCAGACCGAGGGATGTGGCAGCAGGACCGACAGCGGGATCGA
** * *
24546161 CAACAAGCAGAGAGGGACTGGGCTCATCCTCGGCTTACGCATTATGCCTCTCCAGCCTGGCTCTC
66 CAACAAGCAGAGAGGGACAAGGCTAATCCCCGGCTTACGCATTATGCCTCTCCAGCCTGGCTCTC
* * *
24546226 TGACTGGCTGAGTGCCCATACGCTCGTTTCATGGGTTGAATTAGGCATACAGAGTTCATCCCCAG
131 TGACCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGAATTAGGCATACAGAGTTCATCCCCAG
* * *
24546291 TCTAAGCATATAGAGTTCATTCCCAGTCCAAGATCGGACCGGATCAAGGGTTGCGACAGTAAGAT
196 TCTAAGCATACAGAGTTCACTCCCAGTCCAAGATCGGACCAGATCAAGGGTTGCGACAGTAAGAT
** * * * * *
24546356 CGGTAGCATGCAGGAGGGACCGAACTGATCTCCGACTTGCACATTCTACCTCTTCGACCGGCTGA
261 CGACAGCATGCAAGAGGGACCGAACTGATCTCCAACTTACACATTCTACCTCTCCGACCGACTGA
* *
24546421 GCACCCACACGCTCATTTCGTGGGCTGGCTTAGGCATACGAAG-
326 GCACCCACACGCCCATTTCATGGGCTGGCTTAGGCATACGAAGC
* * *
24546464 TACATTCCACATCTAAACCCCAGTCAGACCGAGGGATGTGGCAGCAGGACCGACAGTGGGATCGG
1 TACATTCCACATCTAAGCCCCAGTCAGACCGAGGGATGTGGCAGCAGGACCGACAGCGGGATCGA
* * * * * * *
24546529 CAGCATGCAGGGGGGGACAAGGCTAATCCCCGGCTTACGTATTATGCCTCTCCGGTC-GGCCTCT
66 CAACAAGCAGAGAGGGACAAGGCTAATCCCCGGCTTACGCATTATGCCTCTCCAGCCTGG-CTCT
* * * * * *
24546593 CCTG-CCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCT
130 -CTGACCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGAATTAGGCATACAGAGTTCATCCCC
* * * * * *
24546657 AGTCTAAGCATACAGAGTTCACTCCCAGTCTAAGATTGGACTAGA-CAGAGGTTTGTGACAGTAG
194 AGTCTAAGCATACAGAGTTCACTCCCAGTCCAAGATCGGACCAGATCA-AGGGTTGCGACAGTAA
* * ** * * * *
24546721 GATCGACAGCATGCAAGCGGGATCG-GGTCGATAC-CCAACTTACGCATTTTGCCTCTCCGGCCG
258 GATCGACAGCATGCAAGAGGGACCGAACT-GAT-CTCCAACTTACACATTCTACCTCTCCGACCG
* * * * *
24546784 ACTGAGCACCCCCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGC
321 ACTGAGCACCCACACGCCCATTTCATGGGCTGGCTTAGGCATACGAAGC
** * * *
24546833 T-CATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTTGTGGCAGCAGGA
1 TACATTCCACATCTAAGCCCCAGTCAGACCGAGGGATGTGGCAGCAGGA
24546881 TCGGTAGCAC
Statistics
Matches: 345, Mismatches: 66, Indels: 12
0.82 0.16 0.03
Matches are distributed among these distances:
367 5 0.01
368 335 0.97
369 5 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (369 bp):
TACATTCCACATCTAAGCCCCAGTCAGACCGAGGGATGTGGCAGCAGGACCGACAGCGGGATCGA
CAACAAGCAGAGAGGGACAAGGCTAATCCCCGGCTTACGCATTATGCCTCTCCAGCCTGGCTCTC
TGACCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGAATTAGGCATACAGAGTTCATCCCCAG
TCTAAGCATACAGAGTTCACTCCCAGTCCAAGATCGGACCAGATCAAGGGTTGCGACAGTAAGAT
CGACAGCATGCAAGAGGGACCGAACTGATCTCCAACTTACACATTCTACCTCTCCGACCGACTGA
GCACCCACACGCCCATTTCATGGGCTGGCTTAGGCATACGAAGC
Found at i:24547064 original size:158 final size:158
Alignment explanation
Indices: 24546804--24547166 Score: 435
Period size: 158 Copynumber: 2.3 Consensus size: 158
24546794 CCCACGCCCG
* * * *
24546804 TTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAAACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAAACCAAGGGTT
*** *** *
24546869 GTGGCAGCAGGATCGGTAGCACACAGAGAGGGATCGGGCCAATCCCTGGCTTGCGCATTATGCCT
66 GCAACAGCAGGATCAACAGCACACAGAGAGGGATCGGGCCAATCCCCGGCTTGCGCA-TATGCCT
* *
24546934 CTTCAGTC-GGCTCAGCGCCCGCACACTCC
130 C-TCAGACTGGCTCAGCGCCCGCACACTCA
* ** * *
24546963 TTTCATGGGTTGACTTATACATACGGAGTTCATTCCA-GTCTAAG-ATCAGACCGAACCAAGGGT
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAG-CCAAACCAAGGGT
* * * * *
24547026 TGCAACAGCAGGATCAACAGCACACAGGGTGGGATCGGGTCGATCCCCGGCTTGCGCATCTGCCT
65 TGCAACAGCAGGATCAACAGCACACAGAGAGGGATCGGGCCAATCCCCGGCTTGCGCATATGCCT
* * * *
24547091 CTCCGACTGGTTGAGCGCCCGCACGCTCA
130 CTCAGACTGGCTCAGCGCCCGCACACTCA
24547120 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
24547167 TACGGAGCTC
Statistics
Matches: 170, Mismatches: 30, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
156 4 0.02
157 61 0.36
158 72 0.42
159 33 0.19
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAAACCAAGGGTT
GCAACAGCAGGATCAACAGCACACAGAGAGGGATCGGGCCAATCCCCGGCTTGCGCATATGCCTC
TCAGACTGGCTCAGCGCCCGCACACTCA
Found at i:24547188 original size:26 final size:26
Alignment explanation
Indices: 24547138--24547190 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24547128 GTTGGCTTAG
* *
24547138 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
24547164 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
24547190 G
1 G
24547191 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:24548511 original size:159 final size:156
Alignment explanation
Indices: 24548130--24548544 Score: 389
Period size: 159 Copynumber: 2.6 Consensus size: 156
24548120 CACAGTTTAA
* * * *
24548130 GCATAAGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTACAACAGCAGGATCGGCA
1 GCATAAGGAGTTCATTCC-AGTCTAAGATCA-ATCGGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * * *
24548195 TCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTACCTTTTCAACCGGCTAAGCGCC
64 GCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGTGCATTATACCTCTACAACCGGCTAAGCGCC
* *
24548260 CGCACGCCCGTTTCATGGGTTGGCTTAG
129 CGCACGCCCATTTCATGGGTTGACTTAG
* * ** ** * * * * * * *
24548288 GCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGCGGTACCGGGACCGACA
1 GCATAAGGAGTTCATTCCA-GTCTAAG-ATCAATCGGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * *** * *
24548353 GCAAGCAGAGGGGGACCGGGTCGATCCTTGGCTTGTGCATTATGCCTCTACGGTCGGCTCAGTGC
64 GCACGCAG-GGGGGACCGGGTCGATCCCTGGCTTGTGCATTATACCTCTACAACCGGCTAAGCGC
* * * *
24548418 CCGTACGCTCATTTCGTGGGTTGACTTAT
128 CCGCACGCCCATTTCATGGGTTGACTTAG
* *
24548447 GCATACGGAGTTCATCTCCAGTCTAAGATCGAATCGGACCGAGGGATGCAGCAGCAGGATCGACA
1 GCATAAGGAGTTCAT-TCCAGTCTAAGATC-AATCGGACCGAGGGTTGCAGCAGCAGGATCGACA
*
24548512 GCACGCAGGGGGGAACTGGGTCGATCCCTGGCT
64 GCACGCAGGGGGG-ACCGGGTCGATCCCTGGCT
24548545 GACCGTCCGC
Statistics
Matches: 196, Mismatches: 55, Indels: 11
0.75 0.21 0.04
Matches are distributed among these distances:
157 1 0.01
158 54 0.28
159 137 0.70
160 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATAAGGAGTTCATTCCAGTCTAAGATCAATCGGACCGAGGGTTGCAGCAGCAGGATCGACAGC
ACGCAGGGGGGACCGGGTCGATCCCTGGCTTGTGCATTATACCTCTACAACCGGCTAAGCGCCCG
CACGCCCATTTCATGGGTTGACTTAG
Found at i:24548620 original size:26 final size:26
Alignment explanation
Indices: 24548580--24548632 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24548570 GTTGGCTTAG
*
24548580 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGCTCATTCCCA-GTCTAA
*
24548606 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
24548632 G
1 G
24548633 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:24548717 original size:11 final size:11
Alignment explanation
Indices: 24548701--24548733 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
24548691 CCCGGGGCAC
24548701 CATCGTCGGAG
1 CATCGTCGGAG
24548712 CATCGTCGGAG
1 CATCGTCGGAG
*
24548723 CATCATCGGAG
1 CATCGTCGGAG
24548734 AGCCTAACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:24549702 original size:26 final size:26
Alignment explanation
Indices: 24549666--24549718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24549656 GTTGACTTAG
24549666 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
24549692 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
24549718 G
1 G
24549719 ATCGGCCCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:24550917 original size:26 final size:26
Alignment explanation
Indices: 24550888--24550940 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24550878 GTTGACTTAG
24550888 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
**
24550914 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
24550940 G
1 G
24550941 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:24551296 original size:26 final size:26
Alignment explanation
Indices: 24551253--24551308 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
24551243 TGGGTTGACT
* *
24551253 TAAGCATACAGAGTTCATCCCCAGTC
1 TAAGCAGACAGAGCTCATCCCCAGTC
* *
24551279 TAAGCAGACGGAGCTCATTCCCAGTC
1 TAAGCAGACAGAGCTCATCCCCAGTC
24551305 TAAG
1 TAAG
24551309 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (26 bp):
TAAGCAGACAGAGCTCATCCCCAGTC
Found at i:24552562 original size:26 final size:26
Alignment explanation
Indices: 24552522--24552574 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24552512 GTTAGCTTAG
* **
24552522 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
24552548 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
24552574 G
1 G
24552575 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:24553466 original size:26 final size:26
Alignment explanation
Indices: 24553437--24553489 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24553427 GTTGGCTTAG
24553437 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
24553463 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24553489 G
1 G
24553490 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24554068 original size:27 final size:27
Alignment explanation
Indices: 24554038--24554095 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
24554028 CGTAGGTTGG
24554038 CTAAGGCATACGGAGTTCATCCCCAGT
1 CTAAGGCATACGGAGTTCATCCCCAGT
*
24554065 CTAA-GCATACGGAGTTCATTCCCAGT
1 CTAAGGCATACGGAGTTCATCCCCAGT
24554091 CTAAG
1 CTAAG
24554096 ATCAGACCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (27 bp):
CTAAGGCATACGGAGTTCATCCCCAGT
Found at i:24554406 original size:606 final size:606
Alignment explanation
Indices: 24553183--24554452 Score: 1677
Period size: 606 Copynumber: 2.1 Consensus size: 606
24553173 TCGATTGAGC
* * * * * * *
24553183 GCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAG-CCTAGC
1 GCCCGCACGCTCGTGTCGTGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCCCCAAC
* * * * * * * *
24553247 TGGACCGAGGGTTGTGGTAGCAAGACCGGCAGCGAGATCGACAGCACGAAGAGGGGGAGATCAGA
66 CGGACCGAGGGTTGTAGCAGCAAGACCGACAACGAGATCGACAGCACGAAGAAGAGGAGACCAGA
* * * * * **
24553312 CCGGATCGAAGGTTGCAGCAGTAGGATCGACAGCACGCAGGGGAGACCAGGCCGATCCCCGGCTT
131 CCAGACCGAAAGTTGCAGCAGTAGGATCAACAGCACGCAGGGGAGACCAGGCCAATCCCCAACTT
* * *
24553377 GCACATTCTACCTCTCCGACCGGTTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATA
196 GCACATTCTACCTCTCCGACCGGTTAAGCGCCCGCATGCCCGTTTCGTAGGTTGGCTAAGGCATA
*
24553442 CGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAATCAAGG
261 CGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAATCAAGG
* *
24553507 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGATCGGTTTAATCCTCAACTGGTGCATTATG
326 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGATCGATTTAATCCCCAACTGGTGCATTATG
* * *
24553572 CCTCTTCGGTCGGCCTCTCCGACTGGCTGAGCTGCCACACGCTCGTTTCATGGGTTGACTTAGGC
391 CCTCTCCAGTCAGCCTCTCCGACTGGCTGAGCTGCCACACGCTCGTTTCATGGGTTGACTTAGGC
* ** ** *
24553637 ATACAGAGTTCATCCTCGGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATTGGATCG
456 ATACAGAGTTCATCCCCACTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * ***
24553702 AGGGTTGCGGTAGCAGGATCGGTAGCATGCAGGGGGGACCGAACCGATACCCGACTTTTGCAGTC
521 AGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGACCGAACCGATACCCGACTTGCACAGTC
**
24553767 TACCTCTCTGGCCGGCTAAGT
586 TACCTCTCCAGCCGGCTAAGT
* *
24553788 GCCCGTACGCTCGTGTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCCAA
1 GCCCGCACGCTCGTGTCGTGGGTTGGCTTAGGCATACGGAGCT-CATTCCATGTCTAAGCCCCAA
* * * * * *
24553852 CCGGACTGAGGGTTGTAGCAGTAGGACCGATAAC-AGGATCGGCAGCACGCAGAAGAGGAGACCA
65 CCGGACCGAGGGTTGTAGCAGCAAGACCGACAACGA-GATCGACAGCACGAAGAAGAGGAGACCA
** * *
24553916 GACCAGACCGAAAGTTGGGGTAGTAGGATCAACAGCACGTAGGGGAGACCAGGCCAATCCCCAAC
129 GACCAGACCGAAAGTTGCAGCAGTAGGATCAACAGCACGCAGGGGAGACCAGGCCAATCCCCAAC
* * *
24553981 TTGCACATTCTGCCTCTCCGATCGGTTAAGCGCCTGCATGCCCGTTTCGTAGGTTGGCTAAGGCA
194 TTGCACATTCTACCTCTCCGACCGGTTAAGCGCCCGCATGCCCGTTTCGTAGGTTGGCTAAGGCA
* * *
24554046 TACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGA
259 TACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAATCAA
* * * * ***
24554111 GGGTTGCGGTAGCAGGATCGGTAGCACGTAGAGGGGGATCGATTTGATCCCCGGTTGGTGCATTA
324 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGATCGATTTAATCCCCAACTGGTGCATTA
** * *
24554176 TGCCTCTCCAGTCAGCCTCTCCGGTTGGTTGAG-TGCCCACACGCTCGTTTCGTGGGTTGACTTA
389 TGCCTCTCCAGTCAGCCTCTCCGACTGGCTGAGCTG-CCACACGCTCGTTTCATGGGTTGACTTA
*
24554240 GGCATAC-GAAGTTCATCCCCACTCTATGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGG
453 GGCATACAG-AGTTCATCCCCACTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * *** * *
24554304 ACCGAGGGTTGCGGCAGTAGGATTGATAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCAC
517 ACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGACCGAACCGATACCCGACTTGCAC
* * * *
24554369 ATTCTGCCTTTCCAGCCGGCTGAGT
582 AGTCTACCTCTCCAGCCGGCTAAGT
* *
24554394 GCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGC
1 GCCCGCACGCTCGTGTCGTGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGC
24554453 ATACAGAGCT
Statistics
Matches: 571, Mismatches: 88, Indels: 11
0.85 0.13 0.02
Matches are distributed among these distances:
604 1 0.00
605 55 0.10
606 514 0.90
607 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (606 bp):
GCCCGCACGCTCGTGTCGTGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCCCCAAC
CGGACCGAGGGTTGTAGCAGCAAGACCGACAACGAGATCGACAGCACGAAGAAGAGGAGACCAGA
CCAGACCGAAAGTTGCAGCAGTAGGATCAACAGCACGCAGGGGAGACCAGGCCAATCCCCAACTT
GCACATTCTACCTCTCCGACCGGTTAAGCGCCCGCATGCCCGTTTCGTAGGTTGGCTAAGGCATA
CGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAATCAAGG
GTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGATCGATTTAATCCCCAACTGGTGCATTATG
CCTCTCCAGTCAGCCTCTCCGACTGGCTGAGCTGCCACACGCTCGTTTCATGGGTTGACTTAGGC
ATACAGAGTTCATCCCCACTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
AGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGACCGAACCGATACCCGACTTGCACAGTC
TACCTCTCCAGCCGGCTAAGT
Found at i:24554475 original size:26 final size:26
Alignment explanation
Indices: 24554425--24554477 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24554415 GTTGGCTTAG
* *
24554425 GCATACGGAGCTCATTCCATGTCTAA
1 GCATACAGAGCTCATTCCACGTCTAA
24554451 GCATACAGAGCTCATTCC-CGATCTAA
1 GCATACAGAGCTCATTCCACG-TCTAA
24554477 G
1 G
24554478 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCACGTCTAA
Found at i:24555177 original size:26 final size:26
Alignment explanation
Indices: 24555147--24555199 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24555137 GTTGACTTAG
24555147 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
*
24555173 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24555199 G
1 G
24555200 ATGAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24556496 original size:26 final size:26
Alignment explanation
Indices: 24556467--24556519 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24556457 GTTGACTTAG
*
24556467 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24556493 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24556519 G
1 G
24556520 ATCGAACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24556804 original size:206 final size:206
Alignment explanation
Indices: 24556427--24556805 Score: 463
Period size: 206 Copynumber: 1.8 Consensus size: 206
24556417 CCTTATTGGT
* * * *
24556427 CGGCTGAGCGCCCGCATGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCTA
* * * * * **
24556492 AGCATACAGAGTTCATTCCCAGTCTAAGATCGAACAGGATCAATGGTTGCGGTAGCAGGATAGGT
66 AACATACAGAGTTCATTCCCAGTCTAAGATCGAACAGGATCAAGGGTTACGGCAGCAAGATAGAC
* * * * * * *
24556557 AGCACGCTGGGGGGACCGGGCTGATCCCTGACTTATGCATTCTGTCTGTTCGGCTTGCGCATTAC
131 AACACACAGGGGGGACCAGACCGATCCCAGACTTATGCATTCTGTCTGTTCGGCTTGCGCATTAC
24556622 GCCTCTCCGGC
196 GCCTCTCCGGC
* * * * *
24556633 CGGCTGATCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCGTAAGGAGTTCATCCCTAGTTTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCTA
* * * **
24556698 AACATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGATCTAGGGTTACGGCAGCAAGATTTA
66 AACATACAGAGTTCATTCCCAGTCTAAGATC-GAACAGGATCAAGGGTTACGGCAGCAAGATAGA
* * *
24556762 CAACATACAGGGGGGACCAGACCGATCCCAGGCTTGTGCATTCT
130 CAACACACAGGGGGGACCAGACCGATCCCAGACTTATGCATTCT
24556806 ACCTGTCCGA
Statistics
Matches: 141, Mismatches: 31, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
206 138 0.98
207 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.26
Consensus pattern (206 bp):
CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGTCTA
AACATACAGAGTTCATTCCCAGTCTAAGATCGAACAGGATCAAGGGTTACGGCAGCAAGATAGAC
AACACACAGGGGGGACCAGACCGATCCCAGACTTATGCATTCTGTCTGTTCGGCTTGCGCATTAC
GCCTCTCCGGC
Found at i:24557568 original size:159 final size:158
Alignment explanation
Indices: 24557068--24557570 Score: 428
Period size: 159 Copynumber: 3.2 Consensus size: 158
24557058 CTAGTCTAAC
* * * * * * *
24557068 CATACAGG-GTTCATTCCAAGTCTAAG-ATCAGGCTGGACCGAGGGTTAC-GGCATCAGGATCG-
1 CATAC-GGAGTTCATTCCATGTCTAAGCACCA-GCCGAACCGAGGGAT-CTGGCAACAGGACCGA
** * * * * *
24557129 CAGCACGCA-ATTGGGACCAGGCCGATCCTCGGCTTGTGCATTTTGCCTCTCCGGCAGGCTGAGT
63 CAGCACGCAGAGGGGGACTAGGTCGATCCTCGGCTTGTGCATTATGCCTCTCCGTC-GGCTGAGC
* *
24557193 GCCCGCACACCCGTTTCGTGGGTTGGCTTAGG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * * * * * * * *
24557225 CATAGGGAGCTCATTCCATGTCAAAGCCCCAGCCGAACCGAGGGTTGTGGTAGCAGGACCGGCAG
1 CATACGGAGTTCATTCCATGTCTAAGCACCAGCCGAACCGAGGGATCTGGCAACAGGACCGACAG
* * ** * *
24557290 CACGCAGAGGGGGACTAGGTCGAACCTCGACTTGTGCATTATGCCTCTTTGGTCGGCTCAACGCC
66 CACGCAGAGGGGGACTAGGTCGATCCTCGGCTTGTGCATTATGCCTC-TCCGTCGGCTGAGCGCC
* *
24557355 CGCACGCTCGTTTCGTGGGTTGACTTATG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * * * * *
24557384 CATACAGAGTTCATTACCA-GTCTAAG-ATCAGACCGGATCGAGGGATCTGGCAATAGGATCGAC
1 CATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCGAACCGAGGGATCTGGCAACAGGACCGAC
* * * * * * *
24557447 TGCACGCAGGGGGGGAGC-GGGTCGATCCTCGGCTTCTGCATTCTACCTCTCCAGTCGGTTGAGC
64 AGCACGCAGAGGGGGA-CTAGGTCGATCCTCGGCTTGTGCATTATGCCTCTCC-GTCGGCTGAGC
* *
24557511 GCCCACACGCTCGTTTCGTGTGTTGGCTTAGG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
*
24557543 CATACGGAGTTCATTCCATGCCTAAGCA
1 CATACGGAGTTCATTCCATGTCTAAGCA
24557571 TATGGAGCTC
Statistics
Matches: 271, Mismatches: 63, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 2 0.01
157 42 0.15
158 18 0.07
159 201 0.74
160 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
CATACGGAGTTCATTCCATGTCTAAGCACCAGCCGAACCGAGGGATCTGGCAACAGGACCGACAG
CACGCAGAGGGGGACTAGGTCGATCCTCGGCTTGTGCATTATGCCTCTCCGTCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGG
Found at i:24558247 original size:26 final size:26
Alignment explanation
Indices: 24558218--24558270 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24558208 GTTGACTTAG
24558218 GCATACAGAGCTCA-TCCCTAGTCTAA
1 GCATACAGAGCTCATTCCC-AGTCTAA
* *
24558244 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
24558270 G
1 G
24558271 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:24558688 original size:26 final size:26
Alignment explanation
Indices: 24558658--24558710 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24558648 TTTGACTTAG
24558658 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24558684 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24558710 G
1 G
24558711 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24559051 original size:26 final size:26
Alignment explanation
Indices: 24559003--24559054 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24558993 TGGCTTAGCC
* *
24559003 ATACGGAGTTCATTCCATGTCTAAGA
1 ATACGGAGCTCATTCCATATCTAAGA
24559029 ATACGGAGCTCATTCCCA-ATCTAAGA
1 ATACGGAGCTCATT-CCATATCTAAGA
24559055 TTTTGAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGGAGCTCATTCCATATCTAAGA
Found at i:24559750 original size:26 final size:26
Alignment explanation
Indices: 24559720--24559775 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
24559710 TGAGTTGACT
*
24559720 TAAGCATACGGAGTTCGTCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
24559746 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
24559772 TAAG
1 TAAG
24559776 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:24560388 original size:355 final size:353
Alignment explanation
Indices: 24559701--24560676 Score: 1087
Period size: 355 Copynumber: 2.8 Consensus size: 353
24559691 CGCCCATACA
* * * *
24559701 CTCGTTTCGTGAGTTGACTTAAGCATACGGAGTTCGTCCCCAGTCTAAGCATATGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
24559766 CCAGTCTAAGATCGGA-TCGGATCGAGGGTTGCGACAGTAGGATCAGCAGCACGCAGAGGGGACC
66 CCAGTCTAAGATCGGACT-AGATCGAGGGTTGCGACAGCAAGATCGGCAGCACGCAGGGGGGACC
* * * *
24559830 GGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGGTCGGCTAAGCACCCGCACGCTCGTTTCGT
130 AGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGCT-GGCTGAGCACCCGCACGCTCATTTCGT
* * * **
24559895 GGGTTGGCTTAGGCATACAGAGTATATTCCACGTCTAAGCCCCAATCGGATCGAGGGTTGTGGCA
194 GGGTTGGCTTAGGCATACGGAGTACATTCCTCGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCA
* ** * * * * * * * *
24559960 GCAGGATCGGTAGCAGTTGAGGGGTACCGAGCTGATCCCTGACTTACGCATTATGTCTTTTCAGT
259 GCAGGACCGACAGCAGATCAGGAGCACCGAGCGGATCCCTGACCTACGCATTACGTCTATTCAGT
* *
24560025 CGGCCTCTCTAG-CTGACTAAGCGCCCGCACG
324 C-GCCTCTC-AGACCGACTAAGCCCCCGCACG
* * *
24560056 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCTCAGTCTAAGCATACGGAGTTCATTT
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
* * ** *
24560121 CTAGTGTAAGATCGGACTAGATTAAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGGGGGGACCA
66 CCAGTCTAAGATCGGACTAGATCGAGGGTTGCGACAGCAAGATCGGCAGCACGCAGGGGGGACCA
* *
24560186 GGCCGATCCCCGGCTTGCGTATTCTGCCTCTCCAGCTGGCTGAGCACCCGCACGCTCATTTCGTG
131 GGCCGATCCCCGGCTTGCGCATTTTGCCTCTCC-GCTGGCTGAGCACCCGCACGCTCATTTCGTG
* * * *
24560251 GGTTGCCTTAGGCATACGGAGTACATTCCTCATCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAG
195 GGTTGGCTTAGGCATACGGAGTACATTCCTCGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAG
** * * *
24560316 CAGGACCGACAGTGGGATCAGTAGCACGCAGAAGGGGATCGGGCTGATCCT-CGGC-TTACG-C-
260 CAGGACCGACAG-CAGATCAGGAGCAC-C-G-AGCGGATC--CCTGA-CCTAC-GCATTACGTCT
* *
24560377 ATT-A-T-GCCTCTCCGACCGACTGAGCCCCCGCACG
317 ATTCAGTCGCCTCTCAGACCGACTAAGCCCCCGCACG
*
24560411 CTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
* * ** * **
24560476 CCAGTCTAAGATCGAACCAGGCCGAGGGTTGCGATAGC-AGCATCGGCAGCACATAGGGGGG-CC
66 CCAGTCTAAGATCGGACTAGATCGAGGGTTGCGACAGCAAG-ATCGGCAGCACGCAGGGGGGACC
* * * * * * *
24560539 AAGCCGATCCTCGACTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCAATTCGT
130 AGGCCGATCCCCGGCTTGCGCATTTTGCCTCTCC-GCTGGCTGAGCACCCGCACGCTCATTTCGT
* *
24560604 GGGATGGCTTAGGCATAGGGAGCT-CATTCCAT-GTCTAAGCCCCAGCCGGATCGAGGGTTGTGG
194 GGGTTGGCTTAGGCATACGGAG-TACATTCC-TCGTCTAAGCCCCAGCCGGATCGAGGGTTGTGG
24560667 CAGCAGGACC
257 CAGCAGGACC
24560677 AGCAGCACGT
Statistics
Matches: 523, Mismatches: 84, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
354 123 0.24
355 364 0.70
356 10 0.02
357 2 0.00
358 2 0.00
359 8 0.02
360 1 0.00
361 9 0.02
362 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (353 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCGGACTAGATCGAGGGTTGCGACAGCAAGATCGGCAGCACGCAGGGGGGACCA
GGCCGATCCCCGGCTTGCGCATTTTGCCTCTCCGCTGGCTGAGCACCCGCACGCTCATTTCGTGG
GTTGGCTTAGGCATACGGAGTACATTCCTCGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGC
AGGACCGACAGCAGATCAGGAGCACCGAGCGGATCCCTGACCTACGCATTACGTCTATTCAGTCG
CCTCTCAGACCGACTAAGCCCCCGCACG
Found at i:24560462 original size:26 final size:26
Alignment explanation
Indices: 24560433--24560485 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24560423 GTTGACTTAG
24560433 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24560459 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24560485 G
1 G
24560486 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24560819 original size:159 final size:158
Alignment explanation
Indices: 24560540--24560959 Score: 382
Period size: 159 Copynumber: 2.7 Consensus size: 158
24560530 AGGGGGGCCA
* * * * * * * * *
24560540 AGCCGATCCTCGACTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCAATTCGTG
1 AGCCGATCCCCGACTTGCACATTATGCCTCTCCGGTCGACTCAGCGCCCACACGCTCATTTCGTG
* * * * * ** * **
24560605 GGATGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-CCGGATC-GAGGGTTGTGGC
66 GGTTGACTTAGGCATACGGAGTTCATTCCACGTCTAAG-ATCAGACTGGA-CAGAGGGTTACGGC
* * *
24560668 AGCAGGACCAGCAGCACGTAGAGGG-GGACCG
129 AACAGGACCAACAGCA--TACAGGGAGGACCG
* * * * * *
24560699 GGCCGATCCCCGGCTTGCACATTATGCCTCTTCGGTCGGCTCCGCGCCCACACGTTCATATT-GT
1 AGCCGATCCCCGACTTGCACATTATGCCTCTCCGGTCGACTCAGCGCCCACACGCTCAT-TTCGT
* *
24560763 GGGTTGACTTATGCATACGGAGTTTATTCC-CAGTCTAAGATCAGACTGGACAGAGGGTTACGGC
65 GGGTTGACTTAGGCATACGGAGTTCATTCCAC-GTCTAAGATCAGACTGGACAGAGGGTTACGGC
** *
24560827 AACAGGATGAACAGCATACAGGGAGGATCG
129 AACAGGACCAACAGCATACAGGGAGGACCG
** * * ** *
24560857 ATTCGATCCCCGACTTGCACATTCTGCCTCTCCGGTCGACTGAGCGCCTGCACGCTCGTTTCGTG
1 AGCCGATCCCCGACTTGCACATTATGCCTCTCCGGTCGACTCAGCGCCCACACGCTCATTTCGTG
*
24560922 GGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAG
66 GGTTGACTTAGGCATACGGAGTTCATTCCACGTCTAAG
24560960 CCTATAGAGC
Statistics
Matches: 207, Mismatches: 47, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 8 0.04
158 91 0.44
159 106 0.51
160 2 0.01
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
AGCCGATCCCCGACTTGCACATTATGCCTCTCCGGTCGACTCAGCGCCCACACGCTCATTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCACGTCTAAGATCAGACTGGACAGAGGGTTACGGCAA
CAGGACCAACAGCATACAGGGAGGACCG
Found at i:24561323 original size:82 final size:82
Alignment explanation
Indices: 24561186--24561349 Score: 328
Period size: 82 Copynumber: 2.0 Consensus size: 82
24561176 CCCTATCCCT
24561186 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
1 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
24561251 AGCCATTAAAGTGTCTG
66 AGCCATTAAAGTGTCTG
24561268 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
1 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
24561333 AGCCATTAAAGTGTCTG
66 AGCCATTAAAGTGTCTG
24561350 AAATGGGGAC
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 82 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (82 bp):
CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTG
Found at i:24561773 original size:26 final size:26
Alignment explanation
Indices: 24561737--24561789 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24561727 GTTGACTTAG
* *
24561737 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTATAA
*
24561763 GCATACAGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATCCCCAGTATAA
24561789 G
1 G
24561790 ATCAACCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTATAA
Found at i:24565363 original size:26 final size:26
Alignment explanation
Indices: 24565334--24565386 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24565324 GTTGACTTAG
* *
24565334 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
24565360 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
24565386 G
1 G
24565387 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:24565389 original size:366 final size:367
Alignment explanation
Indices: 24564754--24565656 Score: 1060
Period size: 366 Copynumber: 2.5 Consensus size: 367
24564744 CGGCTGTGTG
* * *
24564754 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCAT-GACTAAGCCCCAGC
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCC-TCGTCTAAGCCCCAGT
* ** * **
24564818 CAGATCGAGGGTTGTGGTAGCAAGATTGGCAGGAGGATCGACAGCACACAGAGGGGGACTGGGCT
65 CAGATCGAGGGTTGTGGTAGCAGGACAGGCATG-GGATCGACAGCACGTAGAGGGGGAC-GGGCT
* * * * * *
24564883 AATCCTCGGCTTGCGA-ATTATGCCTCTCCGA-CCGACCTCTCCAGTCGATTGAGCGCCCGCACG
128 AATCCCCGACTTAC-ACATTATGCCTCTCCGATCCGACCTCTCCAGCCGACTGAGCACCCGCACG
* *
24564946 CTCATTTCATGGGTTGACTTAGGCATACGATGTTCATCCTCAGTCTAAGTATACGGAGTTCATTC
192 CTCATTTCATGGGTTGACTTAGGCATACGATGTTCATCCTCAGTCTAAGCATACGGAGTTCATTA
*
24565011 CCAATCTAAGATCAGACCAGATCGAAGGTTGCGACAGCAGGATCGACAGCACACA-GAGGGGACC
257 CCAATCTAAGATCAGACCAGATCGAAGGTTGCGACAACAGGATCGACAGCACACAGGA-GGGACC
* *
24565075 AGGTTGATCCTCGGCTTGCGCATTCTACCTCTCCGACT-GGCTGAGCA
321 AGGTCGATCCCCGGCTTGCGCATTCTACCTCT-CGACTCGGCTGAGCA
*
24565122 CCCGCACGCTCGTTTCATGGGTTGGCTTA-GCTATACGGAGTACATTCCTCTTCTAAG-CCCAGT
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGC-ATACGGAGTACATTCCTCGTCTAAGCCCCAGT
* * * ** *
24565185 C-GAACCGAGGGTTGTGGTAGCAGGACCGGTATGGGATCGGTAGCACGTAGAGGTGGATCGGGCT
65 CAG-ATCGAGGGTTGTGGTAGCAGGACAGGCATGGGATCGACAGCACGTAGAGGGGGA-CGGGCT
* * * *
24565249 AATCCCCGACTTACACGTTATGCCTCTCCGATCGGA-CTCTTC-GACCGACTGAGCACCCGTACG
128 AATCCCCGACTTACACATTATGCCTCTCCGATCCGACCTCTCCAG-CCGACTGAGCACCCGCACG
** *
24565312 CTCATTTTGTGGGTTGACTTAGGCATACGGA-GTTCATTCC-CTGTCTAAGCATACGGAGTTCAT
192 CTCATTTCATGGGTTGACTTAGGCATAC-GATGTTCA-TCCTCAGTCTAAGCATACGGAGTTCAT
* * ** * * *
24565375 TACCAGTCTAAGATCAGACCGGATCGAAGGTTGCGGTAACAGGATTGACAGCACGCAGGAGGGAT
255 TACCAATCTAAGATCAGACCAGATCGAAGGTTGCGACAACAGGATCGACAGCACACAGGAGGGAC
* * * *
24565440 CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGTCGGCTGAGCA
320 CAGGTCGATCCCCGGCTTGCGCATTCTACCTCTCGACTCGGCTGAGCA
* * * *
24565488 CCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTATATTCCACGTCTAAGCCCCAGTC
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCTCGTCTAAGCCCCAGTC
* * * * * * *
24565553 AGATCGAGGATTATGGCAACAGGACAGGCAGTGGGATCGACAGCACGTAGAGGGGGACCGGTTGA
66 AGATCGAGGGTTGTGGTAGCAGGACAGGCA-TGGGATCGACAGCACGTAGAGGGGGACGGGCTAA
* *
24565618 TCCCC-AGCTTACGCATTATGCCTCTCCGATCAG-CCTCTC
130 TCCCCGA-CTTACACATTATGCCTCTCCGATCCGACCTCTC
24565657 GCAACGGTGG
Statistics
Matches: 452, Mismatches: 66, Indels: 35
0.82 0.12 0.06
Matches are distributed among these distances:
365 5 0.01
366 263 0.58
367 111 0.25
368 73 0.16
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (367 bp):
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCTCGTCTAAGCCCCAGTC
AGATCGAGGGTTGTGGTAGCAGGACAGGCATGGGATCGACAGCACGTAGAGGGGGACGGGCTAAT
CCCCGACTTACACATTATGCCTCTCCGATCCGACCTCTCCAGCCGACTGAGCACCCGCACGCTCA
TTTCATGGGTTGACTTAGGCATACGATGTTCATCCTCAGTCTAAGCATACGGAGTTCATTACCAA
TCTAAGATCAGACCAGATCGAAGGTTGCGACAACAGGATCGACAGCACACAGGAGGGACCAGGTC
GATCCCCGGCTTGCGCATTCTACCTCTCGACTCGGCTGAGCA
Found at i:24565797 original size:26 final size:26
Alignment explanation
Indices: 24565760--24565812 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24565750 GTTGACTTAG
* * *
24565760 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
24565786 GCATACGAAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
24565812 G
1 G
24565813 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTAA
Found at i:24566033 original size:426 final size:425
Alignment explanation
Indices: 24565236--24566086 Score: 1504
Period size: 426 Copynumber: 2.0 Consensus size: 425
24565226 AGCACGTAGA
24565236 GGTGGATCGGGCTAATCCCCGACTTACACGTTATGCCTCTCCGATCGGACTCTTCGACCGACTGA
1 GGTGGATCGGGCTAATCCCCGACTTACACGTTATGCCTCTCCGATCGGACTCTTCGACCGACTGA
* *
24565301 GCACCCGTACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATAC
66 GCACCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATAC
* * **
24565366 GGAGTTCATTACCAGTCTAAGATCAGACCGGATCGAAGGTTGCGGTAACAGGATTGACAGCACGC
131 GAAGTTCATTACCAGTCTAAGATCAGACCAGATCGAAGGTTGCGACAACAGGATTGACAGCACGC
*
24565431 AGGAGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGTCGGCTGAGCACCCGTACG
196 AGGAAGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGTCGGCTGAGCACCCGTACG
* *
24565496 CTCGTTTCATGGGTTGGCTTAGGCATACGAAGTATATTCCACGTCTAAGCCCCAGTCAGATCGAG
261 CTCGTTTCATGGGTTGGCTTAGGCATACGAAGTATATTCCACGTCTAAGCCCCAGTCAAACCGAG
* *
24565561 GATTATGGCAACAGGACAGGCAGTGGGATCGACAGCACGTAGAGGGGGACCGGTTGATCCCCAGC
326 GATTATGGCAACAGGACAGGCAGTGGGATCGACAGCACGCAGAGGGGGACCGATTGATCCCCAGC
24565626 TTACGCATTATGCCTCTCCGATCAGCCTCTCGCAAC
391 TTACGCATTATGCCTCTCCGATCAGCCTCTC-CAAC
* *
24565662 GGTGGATCGGGCTGATCCCCGACTTGCACGTTATGCCTCTCCGATCGGACTCTTCGACCGACTGA
1 GGTGGATCGGGCTAATCCCCGACTTACACGTTATGCCTCTCCGATCGGACTCTTCGACCGACTGA
24565727 GCACCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATAC
66 GCACCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATAC
* *
24565792 GAAGTTCATTACCAGTCTAAGATCAGACCAGATCGAAGGTTGTGACAGCAGGATTGACAGCACGC
131 GAAGTTCATTACCAGTCTAAGATCAGACCAGATCGAAGGTTGCGACAACAGGATTGACAGCACGC
*
24565857 AGGAAGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTTTCTAGTCGGCTGAGCACCCGTACG
196 AGGAAGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGTCGGCTGAGCACCCGTACG
*
24565922 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTATATTCCACGTCTAAGCCCCAGTCAAACCGAG
261 CTCGTTTCATGGGTTGGCTTAGGCATACGAAGTATATTCCACGTCTAAGCCCCAGTCAAACCGAG
* * * *
24565987 GATTGTGGTAACAGGACTGGCAGTGGGATCGACAGCACGCAGAGGGGGATCGATTGATCCCCAGC
326 GATTATGGCAACAGGACAGGCAGTGGGATCGACAGCACGCAGAGGGGGACCGATTGATCCCCAGC
24566052 TTACGCATTATGCCTCTCCGATCAGCCTCTCCAAC
391 TTACGCATTATGCCTCTCCGATCAGCCTCTCCAAC
24566087 AGGCTGAGCA
Statistics
Matches: 404, Mismatches: 21, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
425 4 0.01
426 400 0.99
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.24
Consensus pattern (425 bp):
GGTGGATCGGGCTAATCCCCGACTTACACGTTATGCCTCTCCGATCGGACTCTTCGACCGACTGA
GCACCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATAC
GAAGTTCATTACCAGTCTAAGATCAGACCAGATCGAAGGTTGCGACAACAGGATTGACAGCACGC
AGGAAGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTAGTCGGCTGAGCACCCGTACG
CTCGTTTCATGGGTTGGCTTAGGCATACGAAGTATATTCCACGTCTAAGCCCCAGTCAAACCGAG
GATTATGGCAACAGGACAGGCAGTGGGATCGACAGCACGCAGAGGGGGACCGATTGATCCCCAGC
TTACGCATTATGCCTCTCCGATCAGCCTCTCCAAC
Found at i:24566157 original size:26 final size:26
Alignment explanation
Indices: 24566127--24566231 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
24566117 GTTGACTTAG
24566127 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24566153 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24566179 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
** *
24566205 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24566231 G
1 G
24566232 ATCGGATCGG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24566406 original size:419 final size:417
Alignment explanation
Indices: 24565329--24566595 Score: 1440
Period size: 426 Copynumber: 3.0 Consensus size: 417
24565319 TGTGGGTTGA
* *
24565329 CTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTACCAGTCTAAGATCAGAC
1 CTTAAGCATACGGAGTTCATTCCCTGTCTAAGCATACGAAGTTCATTACCAGTCTAAGATCAGAC
** *
24565394 CGGATCGAAGGTTGCGGTAACAGGATTGACAGCACGCAGGAGGGATCGGGTCGATCCCCGGCTTG
66 CGGATCGAAGGTTGCGACAGCAGGATTGACAGCACGCAGGAGGGATCGGGTCGATCCCCGGCTTG
24565459 CGCATTCTGCCTCTCTAGTCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAC
131 CGCATTCTGCCTCTCTAGTCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* * * * *
24565524 GAAGTATATTCCACGTCTAAGCCCCAGTCAGATCGAGGATTATGGCAACAGGACAGGCAGTGGGA
196 GGAGTATATTCCACGTCTAAGCCCCAGTCAGACCGAGGATTGTGGTAACAGGACTGGCAGTGGGA
* * *
24565589 TCGACAGCACGTAGAGGGGGACCGGTTGATCCCCAGCTTACGCATTATGCCTCTCCGATCAGCCT
261 TCGACAGCACGCAGAGGGGGATCGATTGATCCCCAGCTTACGCATTATGCCTCTCCGATCAGCCT
** * * * * * ** *
24565654 CTCGCAACGG-TG-G-ATCGGGCTGATCCCCGACTTGCA-CGTTATGCCTCTCCG-AT-CGGA-C
326 CTC-CAACGGCTGAGCA-CCCGC--A-CCTCG--TTTCATGGGT-TGACT-TAGGCATACGGAGT
* * * * ** * * ***
24565712 TCTTCGACC-GACTGAGCACCCGCACGCTCATTTTATGGGTT
382 TCATC-CCCAGTCTAAGCATACGGA-GTTCATCCCA---G-T
*
24565753 GACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATACGAAGTTCATTACCAGTCTAAGATCAG
1 --CTTAAGCATACGGAGTTCATTCCCTGTCTAAGCATACGAAGTTCATTACCAGTCTAAGATCAG
* * *
24565818 ACCAGATCGAAGGTTGTGACAGCAGGATTGACAGCACGCAGGAAGGATCGGGTCGATCCCCGGCT
64 ACCGGATCGAAGGTTGCGACAGCAGGATTGACAGCACGCAGGAGGGATCGGGTCGATCCCCGGCT
*
24565883 TGCGCATTCTGCCTTTCTAGTCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCAT
129 TGCGCATTCTGCCTCTCTAGTCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCAT
*
24565948 ACGGAGTATATTCCACGTCTAAGCCCCAGTCAAACCGAGGATTGTGGTAACAGGACTGGCAGTGG
194 ACGGAGTATATTCCACGTCTAAGCCCCAGTCAGACCGAGGATTGTGGTAACAGGACTGGCAGTGG
24566013 GATCGACAGCACGCAGAGGGGGATCGATTGATCCCCAGCTTACGCATTATGCCTCTCCGATCAGC
259 GATCGACAGCACGCAGAGGGGGATCGATTGATCCCCAGCTTACGCATTATGCCTCTCCGATCAGC
24566078 CTCTCCAACAGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATC
324 CTCTCCAAC-GGCTGAGCACCCGCAC-CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATC
24566143 CCCAGTCTAAGCATACGGAGTTCATCCCCAGT
387 CCCAGTCTAAGCATACGGAGTTCAT-CCCAGT
* * * * * *
24566175 C-TAAGCATACGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGAT
1 CTTAAGCATACGGAGTTCATTCCCTGTCTAAGCATACGAAGTTCATTACCAGTCTAAGATCAGAC
* * * ** * * * *
24566239 CGGATCGAGGGTTGCGACAGTAGAATCAATAGCATGCAGGGGGGATCGGGTCGATCCCTGGCTTG
66 CGGATCGAAGGTTGCGACAGCAGGATTGACAGCACGCAGGAGGGATCGGGTCGATCCCCGGCTTG
* * * * * * * * * * * *
24566304 CACATTTTGCCTCTCCATTCGGCTGAACGCCCGCACACTTGTTTCGTGGGTTGGTTTAGGCATAT
131 CGCATTCTGCCTCTCTAGTCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAC
* * ** * * **
24566369 GGAGTACATTCCATGTCTAAGCCCCAACCTGACCGAGGGTTGTGGTAGTAGGACTGGCAGTGGGA
196 GGAGTATATTCCACGTCTAAGCCCCAGTCAGACCGAGGATTGTGGTAACAGGACTGGCAGTGGGA
* * * * * * **
24566434 TCGACAGCATGCAGAGAGGGATCGAGCTGATCCTC-GACTTATGCATTATGCCTTTCCGGCCAGC
261 TCGACAGCACGCAGAGGGGGATCGA-TTGATCCCCAG-CTTACGCATTATGCCTCTCCGATCAGC
* * *
24566498 CTCT-CAGGCTGGCTAAGCACTCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
324 CTCTCCA-AC-GGCTGAGCACCCGCAC-CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
*
24566562 CCCCAGTCTAAGCATACAGAGTTCATTCCCAGT
386 CCCCAGTCTAAGCATACGGAGTTCA-TCCCAGT
24566595 C
1 C
24566596 AAAGATCAAA
Statistics
Matches: 733, Mismatches: 93, Indels: 36
0.85 0.11 0.04
Matches are distributed among these distances:
419 243 0.33
420 118 0.16
421 1 0.00
422 1 0.00
423 3 0.00
424 10 0.01
425 18 0.02
426 332 0.45
427 2 0.00
428 4 0.01
429 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (417 bp):
CTTAAGCATACGGAGTTCATTCCCTGTCTAAGCATACGAAGTTCATTACCAGTCTAAGATCAGAC
CGGATCGAAGGTTGCGACAGCAGGATTGACAGCACGCAGGAGGGATCGGGTCGATCCCCGGCTTG
CGCATTCTGCCTCTCTAGTCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAC
GGAGTATATTCCACGTCTAAGCCCCAGTCAGACCGAGGATTGTGGTAACAGGACTGGCAGTGGGA
TCGACAGCACGCAGAGGGGGATCGATTGATCCCCAGCTTACGCATTATGCCTCTCCGATCAGCCT
CTCCAACGGCTGAGCACCCGCACCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
GTCTAAGCATACGGAGTTCATCCCAGT
Found at i:24567798 original size:26 final size:26
Alignment explanation
Indices: 24567769--24567821 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24567759 GTTGACTTAG
*
24567769 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
24567795 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24567821 G
1 G
24567822 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24567923 original size:11 final size:11
Alignment explanation
Indices: 24567891--24567917 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
24567881 CCCGAGGCAC
24567891 CATCGTCGGAG
1 CATCGTCGGAG
24567902 CATCGTCGGAG
1 CATCGTCGGAG
24567913 CATCG
1 CATCG
24567918 CTGGAGAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:24569105 original size:355 final size:352
Alignment explanation
Indices: 24568415--24569431 Score: 1036
Period size: 351 Copynumber: 2.9 Consensus size: 352
24568405 TTGTACATCC
* * * * * *
24568415 TGCCTCTCTGGTCGGCTGAACGCCCGCACACTCTTTTTGTGGGTTGACTTAGGCATACAGAGTTC
1 TGCCTCTCCGGTCAGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
24568480 ATCGT-ATGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGAGTGA-ACCGGACCGAGGGTTGCG
66 ATCCTCA-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA-TCAGACC-GACCGAGGGTTGCG
* ** ** * * * * *
24568543 ACAGCAAGATCGACAGCACGCAGAGGGGACTGAGTCGATCCCCAGCTTGCGCATTTTGCCTCTCT
128 ATAGCAAGATCGGTAGCACAAAG-GGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTT
* *
24568608 AGCTGACT--GA--CCGTACGCTCATTTCGTGGGTTGGCCTAGGCATACGGAGTACATTCCATGT
192 GGC-GACTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCCTAGGCATACGGAGTACATTCCATGT
* ** * ** *
24568669 CTAAGCCCCAGCC-AGACCGAGGGTTGTGGCAATAGGACCGATAACGGGATCGACAGCATGCAAA
256 CTAAGCCCCAGCCGA-ACTGAGGGTTGTGGCAGCAGGACTGGCAGCGGGATCGACAGCATGCAAA
* * *
24568733 AGGGGACTGGGCTGATCCTCGGCTTGCGTATTA
320 AGGGGACTGGGCTGATCCTCGGCTTACGCATGA
*
24568766 TGCCTCTCCGGTCAGCTGAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
1 TGCCTCTCCGGTCAGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
24568831 ATCCTCAGTCTAAGCATATGGAGTTCATTTCCAGTGTAAGATCAGACCAGACCGAGGGTTGCGGT
66 ATCCTCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGCGAT
* * * *
24568896 AGCAAGATCGGTAGCACATAAGGGGGACCGAACCGATCCTCGGCTTGCACATTCTGCCACTTTGG
130 AGCAAGATCGGTAGCACA-AAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTTGG
* *
24568961 TCGACTGAGAGCCCGCACGCTCATTTCGTGGGTTAGCCTAGGCATACGGAGTACATTCCTTGTCT
194 -CGACTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCCTAGGCATACGGAGTACATTCCATGTCT
* * *
24569026 AAGCCACAGCCGAACTGAGGGTTGTGGCAGCAGGACTGGCAGCGGGATCGACAGCATGCAGAGGG
258 AAGCCCCAGCCGAACTGAGGGTTGTGGCAGCAGGACTGGCAGCGGGATCGACAGCATGCAAAAGG
24569091 GGA-TCGGGCTGATCCTCGGCTTACGCATGA
323 GGACT-GGGCTGATCCTCGGCTTACGCATGA
* * *
24569121 TGCCTCTTCGGTCGGCTTCTTCGATCGACTGAGCGCTCGCATGCTCGTTTCGTGGGTTGACTTAG
1 TGCCTC-TC---CGG-----TC-A--G-CTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
24569186 GCATACGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAAATCAGA-CG---
53 GCATACGGAGTTCATCCTCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGACC
* * * * * * *
24569247 GAGGTTTACAATAGTAGGATCGGTAGCATGCAAA-GGGGACCGAGCTGATCCCCGACTTGCGCAT
118 GAGGGTTGCGATAGCAAGATCGGTAGCA--CAAAGGGGGACCGAGCCGATCCCCGGCTTGCGCAT
* ** * * * * * *
24569311 TCTGCCTCTTCGGCCGGTTGAGCGCCTGCATGC-CAGTTTCATGGGTTGGCTTAGGCATAGGGAG
181 TCTGCCTCTTTGG-CGACTGAGAGCCCGCACGCTCA-TTTCGTGGGTTGGCCTAGGCATACGGAG
* * * * * * *
24569375 TTCATTCCATGTCTAAGCCCCAACTGGATTGAGGGTTATGGCAGCGGGACTGGCAGC
244 TACATTCCATGTCTAAGCCCCAGCCGAACTGAGGGTTGTGGCAGCAGGACTGGCAGC
24569432 ACATAGAGGG
Statistics
Matches: 554, Mismatches: 86, Indels: 40
0.81 0.13 0.06
Matches are distributed among these distances:
350 2 0.00
351 162 0.29
352 4 0.01
353 2 0.00
354 1 0.00
355 134 0.24
356 3 0.01
359 3 0.01
362 2 0.00
363 144 0.26
364 4 0.01
365 3 0.01
366 1 0.00
367 2 0.00
368 87 0.16
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (352 bp):
TGCCTCTCCGGTCAGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATCCTCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTGCGATA
GCAAGATCGGTAGCACAAAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTTGGCG
ACTGAGAGCCCGCACGCTCATTTCGTGGGTTGGCCTAGGCATACGGAGTACATTCCATGTCTAAG
CCCCAGCCGAACTGAGGGTTGTGGCAGCAGGACTGGCAGCGGGATCGACAGCATGCAAAAGGGGA
CTGGGCTGATCCTCGGCTTACGCATGA
Found at i:24569215 original size:26 final size:26
Alignment explanation
Indices: 24569186--24569237 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
24569176 GTTGACTTAG
24569186 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
24569212 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24569238 AATCAGACGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24570369 original size:26 final size:26
Alignment explanation
Indices: 24570333--24570386 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
24570323 GTTGACTTAG
*
24570333 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24570359 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24570385 GC
1 GC
24570387 TTAGACCGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24570570 original size:26 final size:26
Alignment explanation
Indices: 24570518--24570570 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24570508 GTTAGCTTAG
*
24570518 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
24570544 GCATACTGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
24570570 G
1 G
24570571 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:24571637 original size:26 final size:26
Alignment explanation
Indices: 24571607--24571659 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24571597 GTTGACTTAG
24571607 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
24571633 GCATACGTAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24571659 G
1 G
24571660 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24571993 original size:158 final size:157
Alignment explanation
Indices: 24571633--24572135 Score: 492
Period size: 158 Copynumber: 3.2 Consensus size: 157
24571623 CCCAGTCTAA
* * * *
24571633 GCATACGTAGTTCATTCTCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-AGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * ** *
24571698 GCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGGCTCTTCGATCGACTGAGCGCC
65 GCACACAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCACC
** * * *
24571763 CACACGCCCATTTCATGGGTTGGCTTAG
130 CGTACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
24571791 GCATAGGGAGTTCATT-CCATGTTTAAGCCCCAGCCTGACCGAGGGTTGTGGTAGCGGGATCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACAGACCGAGGGTTGCGGTAGCAGGATCGGC
* * * * *
24571855 CGCACACAGAGGGGGA-CTAGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGACTCAGC
64 AGCACACAG-GGGGGATC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGC
* * *
24571919 -TCCGTACGCTCGTTTCGTGGGTTGACTTAT
127 ACCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
24571949 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACAGAGGGTTGCAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * * * *
24572014 ACACATAGGGGGGATCGGGTCAATCCTCGGCTTACGTATTCTGCCTC-TCTGGCCGGCTGAGCAG
65 GCACACAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GGCCGACTGAGCAC
*
24572078 CCGTACGTTCGTTTCGTGGGTTGGCTTAG
129 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
* *
24572107 GCATACGGAGTTCATTTCCAATCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
24572136 TTTGAGCCAC
Statistics
Matches: 276, Mismatches: 60, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
156 2 0.01
157 44 0.16
158 180 0.65
159 50 0.18
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGACCGAGGGTTGCGGTAGCAGGATCGGCAG
CACACAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCACCC
GTACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:24573474 original size:159 final size:159
Alignment explanation
Indices: 24573245--24573832 Score: 516
Period size: 159 Copynumber: 3.7 Consensus size: 159
24573235 ACAACACGCA
* * * ** *
24573245 AGGGGGATCGAGCCGATCCTCGGCTTACGCATTCTGCCTC-TCTGGCCGACTGAATGCCCACACG
1 AGGGGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCTTC-GGCCGGCTCAGCGCCCGCACG
* * *
24573309 -TCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGGACCAA
65 CT-CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAA
*
24573373 GGGCTGTGGCA--ACGAGACCGGCAGCA-AGCAG
129 GGGTTGTGGCAGTA-G-GACCGGCAGCACA-CAG
* * * *
24573404 AGGGGGATCGGGTCGATCCTCGGCTTACGCATTATACCTCTTCGGCCGGCTCAGCGCCCGCATGC
1 AGGGGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGC
* * * ** * **
24573469 TCGTTTC-TAGGTTGACTTATGCATACGTAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACTGA
66 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCAA
* *
24573531 GGGTTGTGGCAGTAGGATCGACAGCACACAG
129 GGGTTGTGGCAGTAGGACCGGCAGCACACAG
* * * * * * * * * * * * *
24573562 -GAGGGATTGAGCCGATCCTCGGTTTTCACATTCTGCCTCTCCGGTCGTCTGAGCCCCCGTAC-A
1 AGGGGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGC
* * * *
24573625 TCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACCGAA
66 T-CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACC-AA
* * *
24573690 -GGTTGTGGTAGTAGGACCGGCAGCACATAA
129 GGGTTGTGGCAGTAGGACCGGCAGCACACAG
* * * * ** *
24573720 AGGGTGATCGAGCTGATCCTCGGCTTGCGCATTATGTCTCTTCGGTTGGCTCAGCACCCGCACGC
1 AGGGGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGC
* * *
24573785 TCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCC-TAGTCTAAG
66 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAG
24573833 ATCTGATCAG
Statistics
Matches: 335, Mismatches: 79, Indels: 30
0.75 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 58 0.17
158 119 0.36
159 152 0.45
160 5 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
AGGGGGATCGAGCCGATCCTCGGCTTACGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGC
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGG
GTTGTGGCAGTAGGACCGGCAGCACACAG
Found at i:24573640 original size:158 final size:156
Alignment explanation
Indices: 24573180--24573836 Score: 400
Period size: 159 Copynumber: 4.2 Consensus size: 156
24573170 TAAGAATATG
* * ** * * * * * * **
24573180 GAGTTCATTCCCAGTCTAAGATC-GGATCGGTCCGAGGGTTGCGACAGCAGGATCGACAACACGC
1 GAGTTCATTCCCAGTCTAAGATCTAG-CCGAACCGAAGGTTGTGGCAGTAGGACCGACAGCACAA
* * * * * * * *** *
24573244 AAGGGGGATCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCTGGCCGACTGAATGCCCACACG
65 AAGGGGGATCGAGCCGATCCTCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCACCCGCACG
* * *
24573309 -TCCGTTTCATGGGTTGGCTTAGGCATAGG
130 CT-CGTTTC-TGGGTTGACTTATGCATA-C
** * * * * *
24573338 GAGTTCATT-CCATGTCTAAGCCCCAGCGGGACC-AAGGGCTGTGGCA--ACGAGACCGGCAGCA
1 GAGTTCATTCCCA-GTCTAAGATCTAGCCGAACCGAA-GGTTGTGGCAGTA-G-GACCGACAGCA
* * * * * * * * *
24573399 -AGCAGAGGGGGATCGGGTCGATCCTCGGCTTACGCATTATACCTCTTCGGCCGGCTCAGCGCCC
62 CA--AAAGGGGGATCGAGCCGATCCTCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCACCC
* *
24573463 GCATGCTCGTTTCTAGGTTGACTTATGCATAC
125 GCACGCTCGTTTCTGGGTTGACTTATGCATAC
* * *
24573495 GTAGTTCATTCCCAGTCTAAGATC-AGACCGAACTGAGGGTTGTGGCAGTAGGATCGACAGCAC-
1 G-AGTTCATTCCCAGTCTAAGATCTAG-CCGAACCGAAGGTTGTGGCAGTAGGACCGACAGCACA
* * * * * * * * *
24573558 ACAGGAGGGATTGAGCCGATCCTCGGTTTTCACATTCTGCCTCTCCGGTCGTCTGAGCCCCCGTA
64 AAAGG-GGGATCGAGCCGATCCTCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCACCCGCA
* * * *
24573623 C-ATCCGTTTCATGGGTTGGCTTAGGCATAGG
128 CGCT-CGTTTC-TGGGTTGACTTATGCATA-C
** * * * *
24573654 GAGTTCATT-CCATGTCTAAGCCCTAGCTGGACCGAAGGTTGTGGTAGTAGGACCGGCAGCACAT
1 GAGTTCATTCCCA-GTCTAAGATCTAGCCGAACCGAAGGTTGTGGCAGTAGGACCGACAGCACA-
* * * * * *
24573718 AAAGGGTGATCGAGCTGATCCTCGGCTTGCGCATTATGTCTCTTCGGTTGGCTCAGCACCCGCAC
64 AAAGGGGGATCGAGCCGATCCTCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCACCCGCAC
24573783 GCTCGTTTCGTGGGTTGACTTATGCATAC
129 GCTCGTTTC-TGGGTTGACTTATGCATAC
*
24573812 AGAGTTCATTCCTAGTCTAAGATCT
1 -GAGTTCATTCCCAGTCTAAGATCT
24573837 GATCAGACCA
Statistics
Matches: 379, Mismatches: 94, Indels: 51
0.72 0.18 0.10
Matches are distributed among these distances:
156 6 0.02
157 62 0.16
158 149 0.39
159 153 0.40
160 9 0.02
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (156 bp):
GAGTTCATTCCCAGTCTAAGATCTAGCCGAACCGAAGGTTGTGGCAGTAGGACCGACAGCACAAA
AGGGGGATCGAGCCGATCCTCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAGCACCCGCACGC
TCGTTTCTGGGTTGACTTATGCATAC
Found at i:24573754 original size:316 final size:317
Alignment explanation
Indices: 24573180--24573889 Score: 859
Period size: 316 Copynumber: 2.2 Consensus size: 317
24573170 TAAGAATATG
* * ** *
24573180 GAGTTCATTCCCAGTCTAAGATCGGATCGGTCCGAGGGTTGCGACAGCAGGATCGACAACACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGACAACACACA
* * *
24573245 AGGGGGATCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCTGGCCGACTGAATGCCCACACGT
66 AGGGGGATCGAGCCGATCCTCGGCTTACACATTCTGCCTCTCCGGCCGACTGAATGCCCACACAT
24573310 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGGACCAAGG
131 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGGACCAAGG
* *
24573375 GCTGTGGCAACGAGACCGGCAGCAAGCAGAGGGGGATCGGGTCGATCCTCGGCTTACGCATTATA
196 GCTGTGGCAACGAGACCGGCAGCAAGCAAAGGGGGATCGGCTCGATCCTCGGCTTACGCATTATA
* *
24573440 CCTCTTCGGCCGGCTCAGCGCCCGCATGCTCGTTTC-TAGGTTGACTTATGCATAC-
261 CCTCTTCGGCCGGCTCAGCACCCGCACGCTCGTTTCGTAGGTTGACTTATGCATACA
* * * * *
24573495 GTAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGTGGCAGTAGGATCGACAGCACAC
1 G-AGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGACAACACAC
* * * * * *
24573560 -AGGAGGGATTGAGCCGATCCTCGGTTTTCACATTCTGCCTCTCCGGTCGTCTG-A-GCCCCCGT
65 AAGG-GGGATCGAGCCGATCCTCGGCTTACACATTCTGCCTCTCCGGCCGACTGAATGCCCAC--
* *
24573622 ACATCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACC
127 ACATCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGGACC
* * * * *
24573687 GAA-GGTTGTGG-TA-GTAGGACCGGCAGCACA-TAAAGGGTGATCGAGCT-GATCCTCGGCTTG
192 -AAGGGCTGTGGCAACG-A-GACCGGCAGCA-AGCAAAGGGGGATCG-GCTCGATCCTCGGCTTA
** ** *
24573747 CGCATTATGTCTCTTCGGTTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATAC
252 CGCATTATACCTCTTCGGCCGGCTCAGCACCCGCACGCTCGTTTCGTAGGTTGACTTATGCATAC
24573812 A
317 A
* *
24573813 GAGTTCATTCCTAGTCTAAGATCTGATCAGACC-AGACCGAGGGTTGC-AGTAGCAGGATCGACA
1 GAGTTCATTCCCAGTCT-A-A---GATCAGACCGA-ACCGAGGGTTGCGA-CAGCAGGATCGACA
24573876 ACACACAAGGGGGA
59 ACACACAAGGGGGA
24573890 CTGGGTCGAT
Statistics
Matches: 334, Mismatches: 42, Indels: 31
0.82 0.10 0.08
Matches are distributed among these distances:
314 6 0.02
315 7 0.02
316 236 0.71
317 38 0.11
318 2 0.01
319 1 0.00
321 1 0.00
322 40 0.12
323 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (317 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGACAACACACA
AGGGGGATCGAGCCGATCCTCGGCTTACACATTCTGCCTCTCCGGCCGACTGAATGCCCACACAT
CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCGGGACCAAGG
GCTGTGGCAACGAGACCGGCAGCAAGCAAAGGGGGATCGGCTCGATCCTCGGCTTACGCATTATA
CCTCTTCGGCCGGCTCAGCACCCGCACGCTCGTTTCGTAGGTTGACTTATGCATACA
Found at i:24574021 original size:26 final size:26
Alignment explanation
Indices: 24573970--24574021 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
24573960 TTGGCTCAGT
* *
24573970 CATACGGAGTTCATTCCATTTTTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
*
24573996 CATATGGAGTTCATTCCCA-GTCTAAG
1 CATACGGAGTTCATT-CCATGTCTAAG
24574022 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGTCTAAG
Found at i:24574755 original size:26 final size:26
Alignment explanation
Indices: 24574719--24574771 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24574709 GTTGGCTTAG
24574719 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
24574745 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24574771 G
1 G
24574772 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24575484 original size:26 final size:26
Alignment explanation
Indices: 24575454--24575504 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
24575444 TGACTTAGGT
24575454 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
24575480 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
24575505 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:24576358 original size:26 final size:26
Alignment explanation
Indices: 24576322--24576374 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24576312 GTTGGCTTAG
24576322 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
24576348 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24576374 G
1 G
24576375 ATTTGAGCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24577098 original size:26 final size:26
Alignment explanation
Indices: 24577047--24577099 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24577037 GTTGACTTAG
* *
24577047 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
* *
24577073 GCATACAGAGTTCATTCCTAGCCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
24577099 G
1 G
24577100 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:24577865 original size:59 final size:59
Alignment explanation
Indices: 24577802--24578557 Score: 883
Period size: 59 Copynumber: 12.7 Consensus size: 59
24577792 TCTTGTGCAG
* *
24577802 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAATATTTTTTTGAAACTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAATATTTTTTTGAAACTTTATTTTCAA
* * * *
24577861 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTGATTTTTTGGAAA-TTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAAT-ATTTTTTTGAAACTTTATTTTCAA
* * *
24577920 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATTGATTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAAAT-A-TTTTTTTGAAACTTTATTTTCAA
* *** * ** * *
24577981 GAAAAAAAAATTACTTTCAACTTTTCCTCGAAAGTATTTTTTTTTGAAAATTTA-TTT-AA
1 GGAAAATTGA-TACTTTCAACTTTTCC-CTAAAAAATATTTTTTTGAAACTTTATTTTCAA
*
24578040 GGAAAATTGATACTTTCAACTTTTCCC-CAAAAATATTTTTTTGGAAACTTTTATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAATATTTTTTT-GAAAC-TTTATTTTCAA
* * * * *
24578100 GGAAAATTTATTCTTTCAACTTTT-CCTCAAAAATATTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAATATTTTTTTGAAACTTTATTTTCAA
* *
24578158 GGAAAATTGATACTTTCAACTTTTCCC-CAAAAATATTTTTTGGAAACTTTTATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAATATTTTTTTGAAAC-TTTATTTTCAA
*
24578217 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATTGATTTTTTTGGAAACTTTTATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAAAT-ATTTTTTT-GAAAC-TTTATTTTCAA
* * * *
24578279 GGAAAATTTATACTTTCAACTTTT-CCTCAAAAATATTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAATA-TTTTTTTGAAACTTTATTTTCAA
* *
24578338 GGAAAATTGATACTTTCAACTTTTCCC-CAAAAATATTTTTTGGAAACTTTTATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAATATTTTTTTGAAAC-TTTATTTTCAA
* * *
24578397 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAAAT-ATTTTTTTGAAACTTTATTTTCAA
* *
24578457 GGAAAATTGATACTTTCAACTTTTTCCC--AAAGATATTTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAAC-TTTTCCCTAAAAAATATTTTTTTGAAACTTT-ATTTTCAA
* *
24578516 GAAAAATTGATACTTTCAACTTTT-CCTCAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAATATTTTTTT
24578558 TATTTTTATT
Statistics
Matches: 608, Mismatches: 60, Indels: 58
0.84 0.08 0.08
Matches are distributed among these distances:
56 11 0.02
57 7 0.01
58 104 0.17
59 244 0.40
60 110 0.18
61 67 0.11
62 59 0.10
63 5 0.01
64 1 0.00
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAAATATTTTTTTGAAACTTTATTTTCAA
Found at i:24578118 original size:180 final size:178
Alignment explanation
Indices: 24577804--24578556 Score: 1085
Period size: 180 Copynumber: 4.2 Consensus size: 178
24577794 TTGTGCAGGG
* * * *
24577804 AAAATTGATACTTTCAACTTTTCCCTAAAAAATATTTTTTTGAAAC-TTTAATTTCGAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCC-CAAAAATATTTTTTGGAAACTTTTATTTTCAAGGAAAAT
*
24577868 TGATACTTTCAACTTTTCCCCAAAAATTGA-TTTTTTGGAAA-TTTATTTTTAAGGAAAATTGAT
65 TGATACTTTCAACTTTTCCCCAAAAATTGATTTTTTTGGAAATTTTATTTTCAAGGAAAATTGAT
24577931 ACTTTCAACTTTTCCTCAAAAATTGATTTTTTTTGAAAATTTATTTTTAAGA
130 ACTTTCAACTTTTCCTCAAAAA-T-A-TTTTTTTGAAAATTTATTTTTAAGA
*** * * * * *
24577983 AAAAAAAATTACTTTCAACTTTTCCTCGAAAGTATTTTTTTTTGAAA-ATTTA-TTT-AAGGAAA
1 AAAATTGA-TACTTTCAACTTTTCC-CCAAA-AATATTTTTTGGAAACTTTTATTTTCAAGGAAA
24578045 ATTGATACTTTCAACTTTTCCCCAAAAA-T-ATTTTTTTGGAAACTTTTATTTTCAAGGAAAATT
63 ATTGATACTTTCAACTTTTCCCCAAAAATTGATTTTTTTGGAAA-TTTTATTTTCAAGGAAAATT
* * *
24578108 TATTCTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGG
127 GATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGA
24578160 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAGGAAAATT
* *
24578225 GATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGGAAACTTTTATTTTCAAGGAAAATTTAT
66 GATACTTTCAACTTTTCCCCAAAAATTGATTTTTTTGGAAA-TTTTATTTTCAAGGAAAATTGAT
*
24578290 ACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTTTAAGG
130 ACTTTCAACTTTTCCTCAAAAATA-TTTTTTTGAAAATTTATTTTTAAGA
24578340 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAGGAAAATT
* * *
24578405 GATACTTTCAACTTTTCCTCAAAAATTGATTTTTTT-GAAAATTTATTTTTAAGGAAAATTGATA
66 GATACTTTCAACTTTTCCCCAAAAATTGATTTTTTTGGAAATTTTATTTTCAAGGAAAATTGATA
* * * *
24578469 CTTTCAACTTTTTCC-CAAAGATATTTTTTGGAAACTTTGATTTTCAAGA
131 CTTTCAAC-TTTTCCTCAAAAATATTTTTTTGAAAATTT-ATTTTTAAGA
*
24578518 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
24578557 TTATTTTTAT
Statistics
Matches: 529, Mismatches: 30, Indels: 31
0.90 0.05 0.05
Matches are distributed among these distances:
174 12 0.02
175 8 0.02
176 19 0.04
177 77 0.15
178 96 0.18
179 110 0.21
180 189 0.36
181 18 0.03
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (178 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAGGAAAATT
GATACTTTCAACTTTTCCCCAAAAATTGATTTTTTTGGAAATTTTATTTTCAAGGAAAATTGATA
CTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGA
Found at i:24578295 original size:297 final size:296
Alignment explanation
Indices: 24577802--24578557 Score: 1200
Period size: 297 Copynumber: 2.5 Consensus size: 296
24577792 TCTTGTGCAG
* * * **
24577802 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAATATTTTTTTGAAACTTTAATTTCGAGGAAAA
1 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGGAAAA
*
24577867 TTGATACTTTCAACTTTTCCCCAAAAATTGATTTTTTGGAAA--TTTATTTTTAAGGAAAATTGA
65 TTGATACTTTCAACTTTTCCCCAAAAA-T-ATTTTTTGGAAACTTTTATTTTCAAGGAAAATTGA
* *
24577930 TACTTTCAACTTTTCCTCAAAAATTGATTTTTTTTGAAAATTTATTTTTAAGAAAAAAAAATTAC
128 TACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGGAAAATTTATTTTCAAGAAAAAAAAATTAC
* *
24577995 TTTCAACTTTTCCTCGAAAGTATTTTTTTTTGAAAATTTA-TTTAAGGAAAATTGATACTTTCAA
193 TTTCAACTTTTCCTCAAAAATA-TTTTTTTTGAAAATTTATTTTAAGGAAAATTGATACTTTCAA
24578059 CTTTTCCCCAAAAATATTTTTTTGGAAACTTTTATTTTCAA
257 CTTTTCCCCAAAAATA-TTTTTTGGAAACTTTTATTTTCAA
* *
24578100 GGAAAATTTATTCTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGGAAAAT
24578165 TGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAGGAAAATTGATAC
66 TGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAGGAAAATTGATAC
* * ***
24578230 TTTCAACTTTTCCTCAAAAATTGATTTTTTTGGAAACTTTTATTTTCAAGGAAAATTTA-TACTT
131 TTTCAACTTTTCCTCAAAAATTGATTTTTTTGGAAA-ATTTATTTTCAAGAAAAAAAAATTACTT
24578294 TCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACT
195 TCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTA-TTTTAAGGAAAATTGATACTTTCAACT
24578359 TTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAA
259 TTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAA
24578397 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-T-ATTTTTTTGAAAATTTATTTTTAAGGAAA
* * * *
24578462 ATTGATACTTTCAACTTTTTCCCAAAGATATTTTTTGGAAACTTTGATTTTCAAGAAAAATTGAT
64 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAGGAAAATTGAT
24578527 ACTTTCAACTTTTCCTCAAAAA-T-ATTTTTTT
129 ACTTTCAACTTTTCCTCAAAAATTGATTTTTTT
24578558 TATTTTTATT
Statistics
Matches: 428, Mismatches: 23, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
295 12 0.03
296 18 0.04
297 206 0.48
298 80 0.19
299 112 0.26
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (296 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGGAAAAT
TGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAGGAAAATTGATAC
TTTCAACTTTTCCTCAAAAATTGATTTTTTTGGAAAATTTATTTTCAAGAAAAAAAAATTACTTT
CAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTTAAGGAAAATTGATACTTTCAACTTT
TCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAA
Found at i:24578665 original size:6 final size:5
Alignment explanation
Indices: 24578583--24578681 Score: 51
Period size: 5 Copynumber: 19.2 Consensus size: 5
24578573 AAAATAGAAT
* * * *
24578583 AATAA AACAA AATAA AAGTGAA AAT-A GATAA AA-AA AATTA AA-AA AAGAA
1 AATAA AATAA AATAA AA-T-AA AATAA AATAA AATAA AATAA AATAA AATAA
* * * *
24578632 AAGTAA AACAAA AATAAA AATAA AATAA AGATAA AAGAA TATTA AATAA
1 AA-TAA AA-TAA AAT-AA AATAA AATAA A-ATAA AATAA AATAA AATAA
24578681 A
1 A
24578682 CCTATCTAAT
Statistics
Matches: 70, Mismatches: 16, Indels: 16
0.69 0.16 0.16
Matches are distributed among these distances:
4 10 0.14
5 36 0.51
6 20 0.29
7 4 0.06
ACGTcount: A:0.75, C:0.02, G:0.07, T:0.16
Consensus pattern (5 bp):
AATAA
Found at i:24578696 original size:4 final size:4
Alignment explanation
Indices: 24578689--24578747 Score: 59
Period size: 4 Copynumber: 14.8 Consensus size: 4
24578679 AAACCTATCT
* * *
24578689 AATA AATA AAAA GAAT- AA-A AATA AATAA AATA TATA AATA AACA AATA
1 AATA AATA AATA -AATA AATA AATA AAT-A AATA AATA AATA AATA AATA
24578737 AATA AATA AAT
1 AATA AATA AAT
24578748 TCAAAAAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
3 4 0.09
4 35 0.78
5 6 0.13
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.22
Consensus pattern (4 bp):
AATA
Found at i:24579328 original size:9 final size:10
Alignment explanation
Indices: 24579305--24579329 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
24579295 TTCTCAGAAA
24579305 AAAAATCTCC
1 AAAAATCTCC
24579315 AAAAATCTCC
1 AAAAATCTCC
24579325 AAAAA
1 AAAAA
24579330 ATTTTTGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.24, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAATCTCC
Found at i:24579694 original size:21 final size:21
Alignment explanation
Indices: 24579670--24579736 Score: 68
Period size: 22 Copynumber: 3.3 Consensus size: 21
24579660 AAAAAATAAC
24579670 AGATAATTAAAAATAATAATA
1 AGATAATTAAAAATAATAATA
* * *
24579691 AGATAAATAAAAAATACT-ACA
1 AGAT-AATTAAAAATAATAATA
*
24579712 AGATAAATAAAAA-AATAATA
1 AGATAATTAAAAATAATAATA
24579732 A-ATAA
1 AGATAA
24579737 ATTATAGTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
19 6 0.16
20 10 0.27
21 10 0.27
22 11 0.30
ACGTcount: A:0.70, C:0.03, G:0.04, T:0.22
Consensus pattern (21 bp):
AGATAATTAAAAATAATAATA
Found at i:24579773 original size:25 final size:25
Alignment explanation
Indices: 24579712--24579781 Score: 65
Period size: 25 Copynumber: 2.9 Consensus size: 25
24579702 AAATACTACA
24579712 AGATAAATAAAA-AAATA-ATAAAT
1 AGATAAATAAAATAAATATATAAAT
* * * *
24579735 AAAT-TATAGTAATAAATATATAACT
1 AGATAAATA-AAATAAATATATAAAT
*
24579760 AGATAAATAAAATACATATATA
1 AGATAAATAAAATAAATATATA
24579782 GCTATTAACA
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
22 3 0.09
23 5 0.14
24 5 0.14
25 19 0.54
26 3 0.09
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29
Consensus pattern (25 bp):
AGATAAATAAAATAAATATATAAAT
Found at i:24579873 original size:20 final size:19
Alignment explanation
Indices: 24579848--24579885 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
24579838 TAATAAATAC
24579848 ATAAAATACAAAAGAAAAAA
1 ATAAAATA-AAAAGAAAAAA
*
24579868 ATAAAATAAAAATAAAAA
1 ATAAAATAAAAAGAAAAA
24579886 CCAAATTGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (19 bp):
ATAAAATAAAAAGAAAAAA
Found at i:24580157 original size:41 final size:42
Alignment explanation
Indices: 24580064--24580238 Score: 203
Period size: 42 Copynumber: 4.2 Consensus size: 42
24580054 TTTTACCAAA
* * * *
24580064 GCTCCTCTAAGCAGAGGCTCAACAACTTTGAGAAACATAAATG
1 GCTCCTCTAAACAGAGGCACAACGACTTTGAGAAA-ATAAATT
**
24580107 GCTCCTCTAATA-AGAGGCTTAACGACTTTG-GAAAATAAATT
1 GCTCCTCTAA-ACAGAGGCACAACGACTTTGAGAAAATAAATT
*
24580148 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACAACGACTTTGAG-AAAATAAATT
* * * *
24580190 ACTCCTCTAAATAGAGGCACCACGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACAACGACTTTGAGAAAATAAATT
24580232 GCTCCTC
1 GCTCCTC
24580239 GACAATCATG
Statistics
Matches: 117, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
40 1 0.01
41 32 0.27
42 57 0.49
43 27 0.23
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACAACGACTTTGAGAAAATAAATT
Found at i:24581262 original size:9 final size:9
Alignment explanation
Indices: 24581243--24581291 Score: 57
Period size: 9 Copynumber: 5.4 Consensus size: 9
24581233 TCCTTTTTCA
24581243 TTCACTTTTT
1 TTCA-TTTTT
24581253 TTCATTTTT
1 TTCATTTTT
24581262 TT-ATTTTTT
1 TTCA-TTTTT
24581271 TTCA-TTTT
1 TTCATTTTT
*
24581279 TTCATTTTC
1 TTCATTTTT
24581288 TTCA
1 TTCA
24581292 AGCATAGTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
8 9 0.26
9 21 0.60
10 5 0.14
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.73
Consensus pattern (9 bp):
TTCATTTTT
Found at i:24581271 original size:18 final size:18
Alignment explanation
Indices: 24581243--24581286 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
24581233 TCCTTTTTCA
*
24581243 TTCACTTTTTTTCATTTT
1 TTCATTTTTTTTCATTTT
*
24581261 TTTATTTTTTTTCATTTT
1 TTCATTTTTTTTCATTTT
24581279 TTCATTTT
1 TTCATTTT
24581287 CTTCAAGCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.77
Consensus pattern (18 bp):
TTCATTTTTTTTCATTTT
Found at i:24581278 original size:7 final size:8
Alignment explanation
Indices: 24581249--24581291 Score: 50
Period size: 8 Copynumber: 5.0 Consensus size: 8
24581239 TTCATTCACT
24581249 TTTTTTCA
1 TTTTTTCA
*
24581257 TTTTTTTA
1 TTTTTTCA
24581265 TTTTTTTTCA
1 --TTTTTTCA
24581275 TTTTTTCA
1 TTTTTTCA
24581283 TTTTCTTCA
1 TTTT-TTCA
24581292 AGCATAGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
8 19 0.63
9 4 0.13
10 7 0.23
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTTTCA
Found at i:24588537 original size:15 final size:16
Alignment explanation
Indices: 24588517--24588548 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
24588507 TTTTAAGTGT
24588517 AATGAATG-AAAATGC
1 AATGAATGAAAAATGC
24588532 AATGAATGAAAAATGC
1 AATGAATGAAAAATGC
24588548 A
1 A
24588549 TGTATGCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.56, C:0.06, G:0.19, T:0.19
Consensus pattern (16 bp):
AATGAATGAAAAATGC
Found at i:24591854 original size:60 final size:59
Alignment explanation
Indices: 24591711--24592166 Score: 595
Period size: 60 Copynumber: 7.7 Consensus size: 59
24591701 TCTTGTGCAG
* * * * **
24591711 GGAAAATTGATACTTTCAACTTTTCCCTAAAAAATA-GTTTTTTGAAACTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATATTTTTTTTGAAAATTTATTTTTAA
* * *
24591770 GGAAAATTGATACTTTCAACTTTTCCTCGAAAATA-TTTTTTGGAAAACTTTTATTTTAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAA--TTTATTTTTAA
* * *
24591830 GGAAAATTGACACTTTCAACTTTTCCTCGAAAATATTTTTTTTTGAAAATTTA--TTAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTTGAAAATTTATTTTTAA
* *
24591888 GGAAAATTGATACTTTCGACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTTTAA
24591947 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-TGATTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATAT--TTTTTTTGAAAATTTATTTTTAA
* * * * *
24592007 GGAAAATTGATACTTTCAACTTTTCC-CCAAAA-AGTTTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTT-ATTTTTAA
*
24592065 GGAAAATTGATACTTTCAACTTTTCCTTAAAAAT-TGATTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATAT--TTTTTTTGAAAATTTATTTTTAA
24592125 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
24592167 ATTTTTATTT
Statistics
Matches: 353, Mismatches: 29, Indels: 30
0.86 0.07 0.07
Matches are distributed among these distances:
57 30 0.08
58 88 0.25
59 75 0.21
60 135 0.38
61 14 0.04
62 11 0.03
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTTTAA
Found at i:24591921 original size:118 final size:119
Alignment explanation
Indices: 24591711--24592165 Score: 631
Period size: 118 Copynumber: 3.8 Consensus size: 119
24591701 TCTTGTGCAG
* * * **
24591711 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAAATAGTTTTTTGAAACTTTAATTTCGAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCTAAAAATTATTTTTTTGAAAATTT-ATTTTAAGGAAA
* *
24591775 ATTGATACTTTCAACTTTTCCTCGAAAATATTTTTTGGAAAACTTTTATTTTAAA
65 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAACTTTTATTTTAAA
* * *
24591830 GGAAAATTGACACTTTCAACTTTTCCTCGAAAATATT-TTTTTTTGAAAATTTA-TTAAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCTAAAA-ATTATTTTTTTGAAAATTTATTTTAAGGAAA
* * *
24591893 ATTGATACTTTCGACTTTTCCCCAAAAATATTTTTTTTGAAAA--TTTATTTTTAA
65 ATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAAACTTTTATTTTAAA
24591947 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATTGATTTTTTTGAAAATTTATTTTTAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCTCTAAAAATT-ATTTTTTTGAAAATTTA-TTTTAAGGAA
* * *
24592011 AATTGATACTTTCAACTTTTCCCCAAAAA-GTTTTTTGG-AAACTTTGATTTTCAA
64 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAACTTTTATTTTAAA
24592065 GGAAAATTGATACTTTCAACTTTTCCT-TAAAAATTGATTTTTTTGAAAATTTATTTTTAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCTCTAAAAATT-ATTTTTTTGAAAATTTA-TTTTAAGGAA
*
24592129 AATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT
64 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
24592166 TATTTTTATT
Statistics
Matches: 304, Mismatches: 21, Indels: 22
0.88 0.06 0.06
Matches are distributed among these distances:
115 3 0.01
116 7 0.02
117 60 0.20
118 135 0.44
119 79 0.26
120 18 0.06
121 2 0.01
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (119 bp):
GGAAAATTGATACTTTCAACTTTTCCTCTAAAAATTATTTTTTTGAAAATTTATTTTAAGGAAAA
TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAACTTTTATTTTAAA
Found at i:24592011 original size:177 final size:176
Alignment explanation
Indices: 24591711--24592166 Score: 645
Period size: 177 Copynumber: 2.6 Consensus size: 176
24591701 TCTTGTGCAG
* * * **
24591711 GGAAAATTGATACTTTCAACTTTTCCCTAAAAA-ATAGTTTTTTGAAACTTTAATTTCGAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTTGAAAATTTATTTTTAAGGAAA
* *
24591775 ATTGATACTTTCAACTTTTCCTCGAAAATATTTTTTGGAAAACTTTTATTTTAAAGGAAAATTGA
66 ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAAC-TTTATTTTAAAGGAAAATTGA
* * *
24591840 CACTTTCAACTTTTCCTCGAAAATATTTTTTTTTGAAAATTT-A-TTAAA
130 CACTTTCAACTTTTCC-CCAAAA-A-GTTTTTTGGAAAATTTGATTTAAA
* *
24591888 GGAAAATTGATACTTTCGACTTTTCCCCAAAAATAT-TTTTTTTGAAAATTTATTTTTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTTGAAAATTTATTTTTAAGGAAA
*
24591952 ATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAA-TTTATTTTTAAGGAAAATTG
66 ATTGATACTTTCAACTTTTCCTCAAAAA-T-ATTTTTTTGAAAACTTTATTTTAAAGGAAAATTG
* * *
24592016 ATACTTTCAACTTTTCCCCAAAAAGTTTTTTGGAAACTTTGATTTTCAA
129 ACACTTTCAACTTTTCCCCAAAAAGTTTTTTGGAAAATTTGA-TTTAAA
*
24592065 GGAAAATTGATACTTTCAACTTTTCCTTAAAAAT-TGATTTTTTTGAAAATTTATTTTTAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATAT-ATTTTTTTGAAAATTTATTTTTAAGGAA
24592129 AATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
65 AATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
24592167 ATTTTTATTT
Statistics
Matches: 252, Mismatches: 19, Indels: 17
0.88 0.07 0.06
Matches are distributed among these distances:
174 13 0.05
175 2 0.01
176 14 0.06
177 152 0.60
178 59 0.23
179 12 0.05
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (176 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTTGAAAATTTATTTTTAAGGAAA
ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAACTTTATTTTAAAGGAAAATTGAC
ACTTTCAACTTTTCCCCAAAAAGTTTTTTGGAAAATTTGATTTAAA
Found at i:24592214 original size:17 final size:16
Alignment explanation
Indices: 24592193--24592289 Score: 63
Period size: 17 Copynumber: 5.9 Consensus size: 16
24592183 AATAGAATAA
24592193 TAAAATAAAATAAAAG
1 TAAAATAAAATAAAAG
* *
24592209 TGAAAATAGATAAAAAAAA
1 T-AAAATA-A-AATAAAAG
* *
24592228 TACAA-AAAAGAAAAG
1 TAAAATAAAATAAAAG
* *
24592243 TAAAACAAAAATAAAAA
1 TAAAA-TAAAATAAAAG
24592260 TAAAATAAAGATAAAAG
1 TAAAATAAA-ATAAAAG
* *
24592277 -AATATTAAATAAA
1 TAAAATAAAATAAA
24592290 CCTAATCTAA
Statistics
Matches: 63, Mismatches: 12, Indels: 13
0.72 0.14 0.15
Matches are distributed among these distances:
15 15 0.24
16 11 0.17
17 26 0.41
18 4 0.06
19 7 0.11
ACGTcount: A:0.74, C:0.02, G:0.07, T:0.16
Consensus pattern (16 bp):
TAAAATAAAATAAAAG
Found at i:24592228 original size:30 final size:29
Alignment explanation
Indices: 24592180--24592237 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
24592170 TTTATTTAAA
*
24592180 GAAAATAGAATAATAAAATAAAATAAAAGT
1 GAAAATAGAATAAAAAAATAAAA-AAAAGT
*
24592210 GAAAATAG-ATAAAAAAAATACAAAAAAG
1 GAAAATAGAAT-AAAAAAATAAAAAAAAG
24592238 AAAAGTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.72, C:0.02, G:0.10, T:0.16
Consensus pattern (29 bp):
GAAAATAGAATAAAAAAATAAAAAAAAGT
Found at i:24592247 original size:6 final size:5
Alignment explanation
Indices: 24592191--24592289 Score: 60
Period size: 5 Copynumber: 19.2 Consensus size: 5
24592181 AAAATAGAAT
* * *
24592191 AATAA AATAA AATAA AAGTGAA AAT-A GATAA AA-AA AATAC AA-AA AAGAA
1 AATAA AATAA AATAA AA-T-AA AATAA AATAA AATAA AATAA AATAA AATAA
* * * *
24592240 AAGTAA AACAAA AATAAA AATAA AATAA AGATAA AAGAA TATTA AATAA
1 AA-TAA AA-TAA AAT-AA AATAA AATAA A-ATAA AATAA AATAA AATAA
24592289 A
1 A
24592290 CCTAATCTAA
Statistics
Matches: 72, Mismatches: 14, Indels: 16
0.71 0.14 0.16
Matches are distributed among these distances:
4 10 0.14
5 38 0.53
6 20 0.28
7 4 0.06
ACGTcount: A:0.75, C:0.02, G:0.07, T:0.16
Consensus pattern (5 bp):
AATAA
Found at i:24592273 original size:11 final size:10
Alignment explanation
Indices: 24592191--24592289 Score: 60
Period size: 11 Copynumber: 9.6 Consensus size: 10
24592181 AAAATAGAAT
24592191 AATAAAATAA
1 AATAAAATAA
24592201 AATAAAAGTGAA
1 AATAAAA-T-AA
*
24592213 AAT-AGATAA
1 AATAAAATAA
*
24592222 AA-AAAATAC
1 AATAAAATAA
*
24592231 AA-AAAAGAA
1 AATAAAATAA
*
24592240 AAGTAAAACAAA
1 AA-TAAAA-TAA
24592252 AATAAAAATAA
1 AAT-AAAATAA
24592263 AATAAAGATAA
1 AATAAA-ATAA
* * *
24592274 AAGAATATTA
1 AATAAAATAA
24592284 AATAAA
1 AATAAA
24592290 CCTAATCTAA
Statistics
Matches: 69, Mismatches: 12, Indels: 16
0.71 0.12 0.16
Matches are distributed among these distances:
9 17 0.25
10 18 0.26
11 21 0.30
12 13 0.19
ACGTcount: A:0.75, C:0.02, G:0.07, T:0.16
Consensus pattern (10 bp):
AATAAAATAA
Found at i:24592305 original size:4 final size:4
Alignment explanation
Indices: 24592298--24592356 Score: 59
Period size: 4 Copynumber: 14.8 Consensus size: 4
24592288 AACCTAATCT
* * *
24592298 AATA AATA AAAA GAAT- AA-A AATA AATA AACAA AATA AATA AACA AATA
1 AATA AATA AATA -AATA AATA AATA AATA AA-TA AATA AATA AATA AATA
24592346 AATA AATA AAT
1 AATA AATA AAT
24592357 TCAAAAAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
3 4 0.09
4 36 0.80
5 5 0.11
ACGTcount: A:0.76, C:0.03, G:0.02, T:0.19
Consensus pattern (4 bp):
AATA
Found at i:24592322 original size:19 final size:19
Alignment explanation
Indices: 24592298--24592335 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
24592288 AACCTAATCT
24592298 AATAAATAAA-AAGAATAAA
1 AATAAATAAACAA-AATAAA
24592317 AATAAATAAACAAAATAAA
1 AATAAATAAACAAAATAAA
24592336 TAAACAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.16
Consensus pattern (19 bp):
AATAAATAAACAAAATAAA
Found at i:24592331 original size:13 final size:13
Alignment explanation
Indices: 24592315--24592351 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
24592305 AAAAAGAATA
24592315 AAAATAAATAAAC
1 AAAATAAATAAAC
24592328 AAAATAAATAAAC
1 AAAATAAATAAAC
24592341 -AAATAAATAAA
1 AAAATAAATAAA
24592352 TAAATTCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 11 0.46
13 13 0.54
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAATAAATAAAC
Found at i:24593033 original size:13 final size:13
Alignment explanation
Indices: 24593017--24593041 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24593007 CTCACTATTT
24593017 TTCTGTGTTTTGC
1 TTCTGTGTTTTGC
24593030 TTCTGTGTTTTG
1 TTCTGTGTTTTG
24593042 TACCTATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.24, T:0.64
Consensus pattern (13 bp):
TTCTGTGTTTTGC
Found at i:24593282 original size:21 final size:22
Alignment explanation
Indices: 24593245--24593358 Score: 85
Period size: 21 Copynumber: 5.2 Consensus size: 22
24593235 GAAAAAAGAG
*
24593245 AAAAAAAAATAAC-AGAT-AAT
1 AAAAAATAATAACAAGATAAAT
* *
24593265 TAAAAATAATAATAAGATAAAT
1 AAAAAATAATAACAAGATAAAT
* *
24593287 CAAAAATACT-ACAAGATAAAT
1 AAAAAATAATAACAAGATAAAT
*
24593308 AAAAAATAATAA-ATAAATTATAAT
1 AAAAAATAATAACA-AGA-TA-AAT
* *
24593332 AATAAATATATAACTAGATAAA-
1 AAAAAATA-ATAACAAGATAAAT
24593354 AAAAA
1 AAAAA
24593359 TACATATATA
Statistics
Matches: 73, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
20 10 0.14
21 23 0.32
22 18 0.25
23 4 0.05
24 12 0.16
25 6 0.08
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23
Consensus pattern (22 bp):
AAAAAATAATAACAAGATAAAT
Found at i:24593400 original size:29 final size:31
Alignment explanation
Indices: 24593332--24593402 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
24593322 AAATTATAAT
* *
24593332 AATAAATATA-TAACTAGATAAAAAAAATAC
1 AATAAAGATATTAACTAGAGAAAAAAAATAC
*
24593362 ATATATAGATATTAAC-AGAGAAAAAAAATA-
1 A-ATAAAGATATTAACTAGAGAAAAAAAATAC
24593392 AATAAAGATAT
1 AATAAAGATAT
24593403 ACATATATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 9 0.26
30 2 0.06
31 20 0.57
32 4 0.11
ACGTcount: A:0.65, C:0.04, G:0.07, T:0.24
Consensus pattern (31 bp):
AATAAAGATATTAACTAGAGAAAAAAAATAC
Found at i:24593439 original size:11 final size:11
Alignment explanation
Indices: 24593423--24593448 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
24593413 ATACATAGTA
24593423 ATAATAAATAC
1 ATAATAAATAC
24593434 ATAATAAATAC
1 ATAATAAATAC
24593445 ATAA
1 ATAA
24593449 AATACTAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (11 bp):
ATAATAAATAC
Found at i:24593477 original size:6 final size:6
Alignment explanation
Indices: 24593462--24593496 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
24593452 ACTAAAGAAA
24593462 AAAAAT -AAAAT AAAAAT AAAAAT ACAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT A-AAAAT AAAAA
24593497 CCAAATTGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 5 0.19
6 16 0.59
7 6 0.22
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:24594149 original size:157 final size:156
Alignment explanation
Indices: 24593669--24594170 Score: 478
Period size: 158 Copynumber: 3.2 Consensus size: 156
24593659 ATCCCCAGTC
* * * *
24593669 TAAGCATACAGAGTTCATTCCCA-GTCTAAGATCGGACCGAATCGAGGGTTGCGACAGCAGAATC
1 TAAGCATACAGAGTTCATT-CCATGTCTAAGATCGAACCG-ACCGAGGGTTGCGACAACAGGATC
* * * * * * * *
24593733 GATAGCATGTAGGGGGGACCGGGCCGATCCCTGGCTTGTGCATTCTACCTCTTCGATCGGCTGAG
64 GACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGA-CCGCTGAG
*
24593798 CGCCCGCACGC-CAATTTCATGGGTTGGCT
128 CGCCCGCACGCTC-ATTTCGTGGGTTGGCT
* ** * * * * * *
24593827 TTAGCATAGGGAGTTCATTCCATGTCTAAGCCTC-AGCCGGACCGAGGGTTGTGGCAACGGGACC
1 TAAGCATACAGAGTTCATTCCATGTCTAAG-ATCGAACC-GACCGAGGGTTGCGACAACAGGATC
* * * * * *
24593891 GCCAACACGC-AGAGGGGAACGGGCCGATCCCCGGCTTGCGTATTATGCCTCTTC-AGCCTGCTT
64 GACAGCACGCAAG-GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGA-CC-GCTG
* * *
24593954 AGCGACCGTACGCTCATTTCGTGGGTTGACT
126 AGCGCCCGCACGCTCATTTCGTGGGTTGGCT
* *
24593985 TATGCATACAGAGTTCATTCTCA-GTCTAAGATCGAACCAGACCGAGGGTTGCGACAATAGGATC
1 TAAGCATACAGAGTTCATTC-CATGTCTAAGATCGAACC-GACCGAGGGTTGCGACAACAGGATC
* * *
24594049 GACAGCACGCAAGGGGGACCGGGTC-ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAA
64 GACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCG-CTGAG
* *
24594113 TGCCCGCACGCTCTTTTCGTGGGTTGGCT
128 CGCCCGCACGCTCATTTCGTGGGTTGGCT
** *
24594142 TGGGCATACGGAGTTCATTCCATGTCTAA
1 TAAGCATACAGAGTTCATTCCATGTCTAA
24594171 CCATACGGAG
Statistics
Matches: 271, Mismatches: 61, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 85 0.31
158 175 0.65
159 8 0.03
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (156 bp):
TAAGCATACAGAGTTCATTCCATGTCTAAGATCGAACCGACCGAGGGTTGCGACAACAGGATCGA
CAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGCTGAGCGC
CCGCACGCTCATTTCGTGGGTTGGCT
Found at i:24594182 original size:26 final size:26
Alignment explanation
Indices: 24594146--24594196 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24594136 TTGGCTTGGG
24594146 CATACGGAGTTCA-TTCCATGTCTAAC
1 CATACGGAGTTCATTTCCA-GTCTAAC
24594172 CATACGGAGTTCATTTCCAGTCTAA
1 CATACGGAGTTCATTTCCAGTCTAA
24594197 GATTTTGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTTCCAGTCTAAC
Found at i:24594881 original size:26 final size:26
Alignment explanation
Indices: 24594852--24594904 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24594842 GTTGACTTAG
24594852 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
24594878 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
24594904 G
1 G
24594905 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:24595236 original size:26 final size:26
Alignment explanation
Indices: 24595207--24595259 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24595197 GTTGACTTAG
*
24595207 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCACTCTAA
* *
24595233 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGAAGTTCATCCCCACTCTAA
24595259 G
1 G
24595260 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCACTCTAA
Found at i:24596759 original size:26 final size:26
Alignment explanation
Indices: 24596707--24596761 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
24596697 TGGGTTGACT
*
24596707 TAAGCATACGGAGTTCATCCCCCGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
24596733 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
24596759 TAA
1 TAA
24596762 AATCGGACCG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:24597262 original size:26 final size:26
Alignment explanation
Indices: 24597210--24597262 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24597200 GTTGGCTTTG
*
24597210 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
24597236 GCATACGGAGTTCATTCTCA-GTATAA
1 GCATACGGAGTTCATTC-CATGTATAA
24597262 G
1 G
24597263 ATTTTGAGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:24597936 original size:26 final size:26
Alignment explanation
Indices: 24597907--24597959 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24597897 GTTGACTTAG
24597907 GCATATAGAGTTCA-TCTCCAGTCTAA
1 GCATATAGAGTTCATTC-CCAGTCTAA
*
24597933 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
24597959 G
1 G
24597960 ACCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:24598501 original size:342 final size:343
Alignment explanation
Indices: 24597864--24598617 Score: 1011
Period size: 342 Copynumber: 2.2 Consensus size: 343
24597854 CTACCTCTCT
* * *
24597864 GGTCGGTTGAGCGCCAGCACGCTAG-TTTCGTGGGTTGACTTAGGCATATAGAGTTCATCTCCAG
1 GGTCGGTTGAGCGCCCGCACGCTTGATTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAG
** * *
24597928 TCTAAGCATATGGAGTTCATTCCCAGTCTAAGACCGAACCGGATAGAGGGTTGCGACAGCAGGAT
66 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGACCGAACCGAATAGAGGGTTGCAACAGCAGGAT
** * * * * *
24597993 CGGTAGTAGGTAGGAGGGATCGGGTCGATCCCCGGCTTGCGCAATCTGCCTCTCCGACCGACTGA
131 CGACAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTGCGCAATCTGCCTCTCCGACCGACTGA
* **
24598058 GTGCCCGTATGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCA
196 GCGCCCGTACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCA
* * *
24598123 ACCAGACCGAGGGTTGTGGTAGCGGGATCAGTAGCACACAGAAGGGGATCGGGTCGATCCCCGGC
261 ACCAGACCGAGGGTTGTGGCAGCGGGACCAGTAGCACACAGAAGGGGATCGGGTCG-TCCCCAGC
*
24598188 TTGTGCATTATGCCACTCC
325 TTGCGCATTATGCCACTCC
*
24598207 GGTCGGTTGAGCGCCCGCACGCTTGATTT-GTGGGTTCG-CTTAGGCATATGGAGTTCATCCCCA
1 GGTCGGTTGAGCGCCCGCACGCTTGATTTCGTGGGTT-GACTTAGGCATATAGAGTTCATCCCCA
* * *
24598270 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACT-GAGGGTTGCAACAGTAGG
65 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGACCGAACCGAA-TAGAGGGTTGCAACAGCAGG
* * * **
24598334 ATCGACAGCACGCAGG-GGGGCCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTT
129 ATCGACAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTGCGCAATCTGCCTCTCCGACCGACT
* *
24598398 GAGCGCCCGTACACCTGTTTCATGGGTTGGCTTAGGCATAAC-GAGTTCATTCCATGTCTAAGCC
194 GAGCGCCCGTACACCCGTTTCATGGGTTGGCTTAGGCAT-ACGGAGTACATTCCATGTCTAAGCC
* * * *
24598462 CCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCACACAGAGGGGGATCGGGTCGTCCCCA
258 CCAACCAGACCGAGGGTTGTGGCAGCGGGACCAGTAGCACACAGAAGGGGATCGGGTCGTCCCCA
* *
24598527 GCTTGCGCATTATGCCTCTTC
323 GCTTGCGCATTATGCCACTCC
* * * * * *
24598548 GGTCGGCTCGA-CGCCCGCACGC-TCATTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCA
1 GGTCGG-TTGAGCGCCCGCACGCTTGATTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCA
24598611 GTCTAAG
65 GTCTAAG
24598618 ATCGGACCGA
Statistics
Matches: 359, Mismatches: 45, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
340 6 0.02
341 74 0.21
342 153 0.43
343 121 0.34
344 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (343 bp):
GGTCGGTTGAGCGCCCGCACGCTTGATTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAG
TCTAAGCATACAGAGTTCATTCCCAGTCTAAGACCGAACCGAATAGAGGGTTGCAACAGCAGGAT
CGACAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTGCGCAATCTGCCTCTCCGACCGACTGA
GCGCCCGTACACCCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCA
ACCAGACCGAGGGTTGTGGCAGCGGGACCAGTAGCACACAGAAGGGGATCGGGTCGTCCCCAGCT
TGCGCATTATGCCACTCC
Found at i:24598577 original size:158 final size:158
Alignment explanation
Indices: 24598276--24598777 Score: 467
Period size: 158 Copynumber: 3.2 Consensus size: 158
24598266 CCCAGTCTAA
* * * *
24598276 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCGGACCGAACTGAGGGTT---GCAACAGTAGGAT
1 GCATACAGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGGTTACGGCAACA--A-GAC
* * * * * *
24598336 CGACAGCACGCAGGGGGG-CCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGA
62 CGACAGCACACAGGGGGGATCGGGTCGATCCCC-GCTTGCGCATTCTGCCTCTTCGGTCGGCTGA
24598400 GCGCCCGTACAC-CT-GTTTCATGGGTTGGCTTAG
126 GCGCCCG--CACGCTCGTTTCATGGGTTGGCTTAG
* * ** * ** *
24598433 GCATA-ACGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACA-GAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTACGGCAACAAGACCGA
* *
24598496 TAGCACACAGAGGGGGATCGGGTCG-TCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGCTCGA-
65 CAGCACACAG-GGGGGATCGGGTCGATCCCC-GCTTGCGCATTCTGCCTCTTCGGTCGGCT-GAG
* * *
24598559 CGCCCGCACGCTCATTTCATGGGTTGACTTAT
127 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
24598591 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCGGACCGAACCGAGGGTTACGGCAACAAGATCGA
1 GCATACAGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCGAGGGTTACGGCAACAAGACCGA
* * *
24598654 CAGCACACAGGGGGGATCGGGTCGATCCCCGACTTGCGTATTCTGCCTC-TCAGGCCGACTGAGC
65 CAGCACACAGGGGGGATCGGGTCGATCCCCG-CTTGCGCATTCTGCCTCTTC-GGTCGGCTGAGC
* * *
24598718 GCCCGTACGCTCGTTTCGTGGGTTGGCTTTG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* *
24598749 GCATACGGAGTTCATTCCATATCTAAGCA
1 GCATACAGAGTTCATTCCATGTCTAAGCA
24598778 TACGGTGTTC
Statistics
Matches: 279, Mismatches: 46, Indels: 38
0.77 0.13 0.10
Matches are distributed among these distances:
156 7 0.03
157 71 0.25
158 184 0.66
159 13 0.05
160 4 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCATGTCTAAGCACCAGACCGAACCGAGGGTTACGGCAACAAGACCGAC
AGCACACAGGGGGGATCGGGTCGATCCCCGCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:24601624 original size:355 final size:355
Alignment explanation
Indices: 24600966--24601637 Score: 999
Period size: 355 Copynumber: 1.9 Consensus size: 355
24600956 CTATCCGTTC
* * *** ** * *
24600966 GATCCCCGGCTTGCTCATCCTGCCTCTCTGGTCGATTGAGTGCCCGTACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATCATGCCTCTCCAATCGACAGAGTGCCCGTACGCTCATTTCATGGGTT
**
24601031 GACTTAGCCATACGGAGTTCATCCACAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGG
66 GACTTAGCCATACGGAGTTCATCCACAGTCTAAGCATAAAGAGTTCATTCCTAGTCTAAGATCGG
* * *
24601096 ATCGGATCGAGGGTTGCAACAGCAGGATCGACAGCACGCAGGGGGGACCGAGTCGATCCCCGGCT
131 AACGGATCAAGGGTTGCAACAGCAGGATCGACAGCACACAGGGGGGACCGAGTCGATCCCCGGCT
* * *
24601161 TGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
196 TGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
*
24601226 ACAAAGTACATTCCATGTCTAAGCCCCAGCCAGACCCAGGGTTGTGGCAGCAGGACCAGCAGTGG
261 ACAAAGTACATTCCATGTCTAAGCCCCAACCAGACCCAGGGTTGTGGCAGCAGGACCAGCAGTGG
24601291 GATCGGCAGCACGCAGAGGGGGACCGAGCT
326 GATCGGCAGCACGCAGAGGGGGACCGAGCT
*
24601321 GATCCCCGGCTTGCGCATTATGCCTCTCCAATCGACAGAGTGCCCGTACGCTCATTTCATGGGTT
1 GATCCCCGGCTTGCGCATCATGCCTCTCCAATCGACAGAGTGCCCGTACGCTCATTTCATGGGTT
* *
24601386 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAAAGAGTTCATTGCC-AGTCTAAGATC-
66 GACTTAGCCATACGGAGTTCATCCACAGTCTAAGCATAAAGAGTTCATT-CCTAGTCTAAGATCG
* *
24601449 GAACAGGATCAAGGGTTGCGACAGCAGGATC-AGCAGCACACAGGGGGGACCGGGTCGATCCCCG
130 GAAC-GGATCAAGGGTTGCAACAGCAGGATCGA-CAGCACACAGGGGGGACCGAGTCGATCCCCG
*
24601513 GCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTGGG
193 GCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGG
*** * * * * * *
24601578 CATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGTAGCGGGACC
258 CATACAAAGTACATTCCATGTCTAAGCCCCAACCAGACCCAGGGTTGTGGCAGCAGGACC
24601638 GGTAGCACGC
Statistics
Matches: 281, Mismatches: 33, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
354 4 0.01
355 275 0.98
356 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (355 bp):
GATCCCCGGCTTGCGCATCATGCCTCTCCAATCGACAGAGTGCCCGTACGCTCATTTCATGGGTT
GACTTAGCCATACGGAGTTCATCCACAGTCTAAGCATAAAGAGTTCATTCCTAGTCTAAGATCGG
AACGGATCAAGGGTTGCAACAGCAGGATCGACAGCACACAGGGGGGACCGAGTCGATCCCCGGCT
TGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
ACAAAGTACATTCCATGTCTAAGCCCCAACCAGACCCAGGGTTGTGGCAGCAGGACCAGCAGTGG
GATCGGCAGCACGCAGAGGGGGACCGAGCT
Found at i:24601906 original size:158 final size:157
Alignment explanation
Indices: 24601426--24601920 Score: 535
Period size: 158 Copynumber: 3.1 Consensus size: 157
24601416 TAAGCATAAA
* * * * *
24601426 GAGTTCATTGCCA-GTCTAAGATCGAA-CAGGATCAAGGGTTGCGACAGCAGGATCAGCAGCACA
1 GAGTTCATT-CCAGGTCTAAGACCCAATC-GGACCGAGGGTTGCG-CAGCAGGATCAGCAGCACG
*
24601489 CAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCAC
63 CAGGGAGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCAC
* *
24601554 GCTCATTTCATGGGTTGGCTTGGGCATAGG
128 GCTCATTTCATGGGTTGGCTTAGGCATACG
* * * * * * * *
24601584 GAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGTAGCGGGACCGGTAGCACGCA
1 GAGTTCATTCCAGGTCTAAGACCCAATCGGACCGAGGGTTG-CGCAGCAGGATCAGCAGCACGCA
* * * * * *
24601649 GAGGAGGATCGGGTCGATCCCCCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCAC
65 G-GGAGGACCGGGTCGAT-CCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCAC
* * * * * *
24601714 GCTCCTTTTATGGATTGACTTATGCATATG
128 GCTCATTTCATGGGTTGGCTTAGGCATACG
* **** * *
24601744 GAGTTCATTCCCGGTCTAAGATTGGATCGGACCGAGGGTTGCAGCAGTAGGATCAACAGCACGCA
1 GAGTTCATTCCAGGTCTAAGACCCAATCGGACCGAGGGTTGC-GCAGCAGGATCAGCAGCACGCA
* * * *
24601809 GGGTGGACCGGGTTGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACAC
65 GGGAGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGC
* *
24601874 TCGTTTCGTGGGTTGGCTTAGGCATACG
130 TCATTTCATGGGTTGGCTTAGGCATACG
*
24601902 GAGTTCATTCCATGTCTAA
1 GAGTTCATTCCAGGTCTAA
24601921 TCATACGAAG
Statistics
Matches: 271, Mismatches: 60, Indels: 12
0.79 0.17 0.03
Matches are distributed among these distances:
157 3 0.01
158 125 0.46
159 29 0.11
160 114 0.42
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCAGGTCTAAGACCCAATCGGACCGAGGGTTGCGCAGCAGGATCAGCAGCACGCAG
GGAGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCT
CATTTCATGGGTTGGCTTAGGCATACG
Found at i:24601932 original size:26 final size:26
Alignment explanation
Indices: 24601896--24601946 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
24601886 TTGGCTTAGG
*
24601896 CATACGGAGTTCATT-CCATGTCTAAT
1 CATACGAAGTTCATTCCCA-GTCTAAT
24601922 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
24601947 GATTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAT
Found at i:24603007 original size:26 final size:26
Alignment explanation
Indices: 24602971--24603023 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24602961 GTTGACTTAG
24602971 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24602997 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24603023 G
1 G
24603024 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24603507 original size:26 final size:26
Alignment explanation
Indices: 24603471--24603523 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24603461 GTTAGCTTAG
24603471 GCATACAAAGTTCATTC-CATGTCTAA
1 GCATACAAAGTTCATTCTCA-GTCTAA
*
24603497 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACAAAGTTCATTCTCAGTCTAA
24603523 G
1 G
24603524 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCTCAGTCTAA
Found at i:24604229 original size:26 final size:26
Alignment explanation
Indices: 24604189--24604244 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
24604179 TGGGTTGACT
**
24604189 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAAAGTTCATCCCCAGTC
*
24604215 TAAGCATACAAAGTTCATTCCCAGTC
1 TAAGCATACAAAGTTCATCCCCAGTC
24604241 TAAG
1 TAAG
24604245 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATCCCCAGTC
Found at i:24604734 original size:26 final size:26
Alignment explanation
Indices: 24604704--24604754 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24604694 TGGCTTAGGT
24604704 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGTTCATTCCCA-GTCTAAGC
24604730 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
24604755 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:24606087 original size:26 final size:26
Alignment explanation
Indices: 24606051--24606103 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24606041 GTTGGCTTAG
24606051 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
24606077 GCATCCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24606103 G
1 G
24606104 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24606820 original size:26 final size:26
Alignment explanation
Indices: 24606784--24606836 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24606774 GTTGACTTAG
*
24606784 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
*
24606810 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
24606836 G
1 G
24606837 ATTAAAACAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:24607175 original size:26 final size:26
Alignment explanation
Indices: 24607139--24607191 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24607129 GTTGACTTAG
*
24607139 GCATAGGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24607165 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24607191 G
1 G
24607192 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24607506 original size:158 final size:158
Alignment explanation
Indices: 24607165--24607507 Score: 413
Period size: 158 Copynumber: 2.2 Consensus size: 158
24607155 CCCAGTCTAA
* * ** *
24607165 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGTGTTACGACAACAGGATCGGTA
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGACAACAGGATCGGTA
* * * * * *
24607230 GCACGCACGGGGGATCGGACTGATCCTCGAGTTACGCATTCTGCCTCTTCGGCCGACTGAGCACC
66 GCACGCAAGAGGGATCGGACTGATCCCCGAGTTACGCATTCTACCTCTCCGACCGACTGAGCACC
*
24607295 CGTACGCCCGTTTCGTGGGTTGGCTTAG
131 CGTACGCCCGTTTCGTAGGTTGGCTTAG
* * *
24607323 GCATAGGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAGGGTTGC-ATCAGCAGGATCGGT
1 GCATAGGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGA-CAACAGGATCGGT
* * * * * * **
24607387 AGCATGTAAGAGGGATCGG-GTCGATCCCCGGGTTGCGCATTCTACCTCTCCGATCGACTGAGTG
65 AGCACGCAAGAGGGATCGGACT-GATCCCCGAGTTACGCATTCTACCTCTCCGACCGACTGAGCA
* *
24607451 CCCGTATGCCCGTTTCGTATGTTGGCTTAG
129 CCCGTACGCCCGTTTCGTAGGTTGGCTTAG
24607481 GCATAGGGAGTTCATT-CCATGTCTAAG
1 GCATAGGGAGTTCATTCCCA-GTCTAAG
24607508 CCCTAGTCGG
Statistics
Matches: 156, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
157 5 0.03
158 151 0.97
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGACAACAGGATCGGTA
GCACGCAAGAGGGATCGGACTGATCCCCGAGTTACGCATTCTACCTCTCCGACCGACTGAGCACC
CGTACGCCCGTTTCGTAGGTTGGCTTAG
Found at i:24607746 original size:317 final size:317
Alignment explanation
Indices: 24607238--24607825 Score: 676
Period size: 317 Copynumber: 1.9 Consensus size: 317
24607228 TAGCACGCAC
* * * * *
24607238 GGGGGATCGGACTGATCCTCGAGTTACGCATTCTGCCTCTTCGGCCGACTGAGCACCCGTACGCC
1 GGGGGATCGGACCGATCCTCGAGTTACGCATTATGCCTCTTCGGCCGACTCAACACCCGCACGCC
** *
24607303 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAGGG
66 CGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAGGG
* ** ** * * * *
24607368 TTGCATCAGCAGGATCGGTAGCATGTAAGAGGGATCGGGTCGATCCCCGGGTTGCGCATTCTACC
131 TTGCAGCAGCACAATCGACAGCACGCAAGAGGGATCGGATCGATCCCCGGCTTGCGCATTCTACC
* * ** * * * * *
24607433 TCTCCGATCGACTGAGTGCCCGTATGCCCGTTTCGTATGTTGGCTTAGGCATAGGGAGTTCATTC
196 TCTCCGACCGACTCAGCACCCGCACGCCCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTC
24607498 CATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGTAGCGGGACTGGCAGTACGCAGA
261 CATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGTAGCGGGACTGGCAGTACGCAGA
* * * *
24607555 GGGGGATCGGGCCGATCCTCG-GCTTGCGCATTATGCCTCTTCGGCC-AGTTCAACGCCCGCACG
1 GGGGGATCGGACCGATCCTCGAG-TTACGCATTATGCCTCTTCGGCCGA-CTCAACACCCGCACG
* * * * * * ** *
24607618 CTCGTTTTGTGGGTTCACTTATGCCTACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAT
64 CCCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAG
* * * * * * *
24607683 GGTTGCGGCAGCACAATCGACAGCACGCAGGGGGGATCGGATCGATTCCTGGCTTGTGCATTCTG
129 GGTTGCAGCAGCACAATCGACAGCACGCAAGAGGGATCGGATCGATCCCCGGCTTGCGCATTCTA
* * ** *
24607748 CCTCTCCGGCCGACTCAGCACCTGCACGTTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
194 CCTCTCCGACCGACTCAGCACCCGCACGCCCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCAT
*
24607813 TCCTTGTCTAAGC
259 TCCATGTCTAAGC
24607826 AAACGGAGTT
Statistics
Matches: 217, Mismatches: 52, Indels: 4
0.79 0.19 0.01
Matches are distributed among these distances:
316 2 0.01
317 215 0.99
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (317 bp):
GGGGGATCGGACCGATCCTCGAGTTACGCATTATGCCTCTTCGGCCGACTCAACACCCGCACGCC
CGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAGGG
TTGCAGCAGCACAATCGACAGCACGCAAGAGGGATCGGATCGATCCCCGGCTTGCGCATTCTACC
TCTCCGACCGACTCAGCACCCGCACGCCCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTC
CATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGTAGCGGGACTGGCAGTACGCAGA
Found at i:24608550 original size:26 final size:26
Alignment explanation
Indices: 24608520--24608572 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24608510 GTTGACTTAG
* *
24608520 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
**
24608546 GCATACAGAGTTAATTGCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
24608572 G
1 G
24608573 ATCGAACAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAGTCTAA
Found at i:24609058 original size:26 final size:26
Alignment explanation
Indices: 24609022--24609074 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24609012 GTTGGCTTAG
24609022 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
24609048 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24609074 G
1 G
24609075 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24610248 original size:26 final size:26
Alignment explanation
Indices: 24610218--24610285 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
24610208 TGGCTTAGGC
24610218 ATACGAAGTTCATTCCATGTCTAAGG
1 ATACGAAGTTCATTCCATGTCTAAGG
24610244 ATACGAAGTTCATTCCATGTCTAAGG
1 ATACGAAGTTCATTCCATGTCTAAGG
*
24610270 ATACGGAGTTCATTCC
1 ATACGAAGTTCATTCC
24610286 CAGTCAAGAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCATGTCTAAGG
Found at i:24611775 original size:16 final size:17
Alignment explanation
Indices: 24611744--24611775 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24611734 CAACTTTTCC
24611744 TCAAAATTTGATTTTTT
1 TCAAAATTTGATTTTTT
24611761 TCAAAATTT-ATTTTT
1 TCAAAATTTGATTTTT
24611776 AAGGAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.59
Consensus pattern (17 bp):
TCAAAATTTGATTTTTT
Found at i:24611876 original size:59 final size:58
Alignment explanation
Indices: 24611719--24612417 Score: 861
Period size: 59 Copynumber: 11.7 Consensus size: 58
24611709 CTTGTGTAAA
* ** * *
24611719 GAAAATTGATACTTTCAACTTTTCCTCAAAATTTGATTTTTTTCAAAATTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTTCCTCAAAA-AT-ATTTTTTGGAAATTTTATTTTCAAG
*
24611779 GAAAATTGATACTTGATACTTTCAAC-TTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAA
1 G--AA---A-A-TTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAA-TTTTATTTTCAA
24611843 G
58 G
* *
24611844 GAAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTTGAAATTTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAA-T-A-TTTTTTGGAAATTTTATTTTCAAG
* *
24611905 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAACTTTTATTTTCAAA
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGG-AAA-TTTTATTTTCAAG
* * * *
24611965 GAAAATTGATACTTTCAACTTTTCCTCGAAAATATGTTTTTTGAAAATTTA-TTT-ATG
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATAT-TTTTTGGAAATTTTATTTTCAAG
*
24612022 GAAAATTGATACTTTCGACTTTTTCC-CAAAAATATTATTTTGGAAACTTTTATTTTCAAG
1 GAAAATTGATACTTTCAAC-TTTTCCTCAAAAATATT-TTTTGGAAA-TTTTATTTTCAAG
* *
24612082 G-AAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTTCAAG
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTGGAAATTTTATTTTCAAG
* *
24612140 AAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAG
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAA-TTTTATTTTCAAG
* *
24612199 GAAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTCAAG
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAA-T-ATTTTTTGGAAATTTTATTTTCAAG
*
24612259 GAAAATTGATACTTTCAACTTTT-TTCCAAAAATATTTTTTGGAAACTTTTATTTTCAAG
1 GAAAATTGATACTTTCAACTTTTCCT-CAAAAATATTTTTTGGAAA-TTTTATTTTCAAG
* * * *
24612318 AAAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAA-T-ATTTTTTGGAAATTTTATTTTCAAG
* *
24612378 GAAAATTGATACTTTCAACTTTTCCTCCAAAATTTTTTTT
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT
24612418 TATTTTTATT
Statistics
Matches: 562, Mismatches: 46, Indels: 64
0.84 0.07 0.10
Matches are distributed among these distances:
56 1 0.00
57 35 0.06
58 79 0.14
59 171 0.30
60 141 0.25
61 72 0.13
62 12 0.02
63 2 0.00
64 10 0.02
65 14 0.02
66 11 0.02
67 14 0.02
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (58 bp):
GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTTATTTTCAAG
Found at i:24612288 original size:119 final size:119
Alignment explanation
Indices: 24611719--24612418 Score: 1083
Period size: 119 Copynumber: 5.8 Consensus size: 119
24611709 CTTGTGTAAA
* *
24611719 GAAAATTGATACTTTCAACTTTTCCTCAAAATTTGATTTTTTTCAAAATTTATTTTTAAGGAAAA
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGG--AA
24611784 TTGATACTTGATACTTTCAAC-TTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAG
64 ---A-A-TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAG
*
24611844 GAAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTTGAAATTTTATTTTTAAGGAAA
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATTGA-TTTTTTTGAAAATTTATTTTTAAGGAAA
*
24611909 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAACTTTTATTTTCAAA
65 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGG-AAACTTTTATTTTCAAG
* *
24611965 GAAAATTGATACTTTCAACTTTTCCTCGAAAA-T-ATGTTTTTTGAAAATTTA--TTTATGGAAA
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATTGAT-TTTTTTGAAAATTTATTTTTAAGGAAA
* *
24612026 ATTGATACTTTCGACTTTTTCCCAAAAATATTATTTTGGAAACTTTTATTTTCAAG
65 ATTGATACTTTCAACTTTTCCCCAAAAATATT-TTTTGGAAACTTTTATTTTCAAG
* *
24612082 G-AAATTGATACTTTCAACTTTTCCTCAAAAA-T-ATTTTTTTTGAAAATTTATTTTCAAGAAAA
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATTGA-TTTTTTTGAAAATTTATTTTTAAGGAAA
24612144 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAG
65 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAG
*
24612199 GAAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTCAAGGAAAA
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGGAAAA
**
24612264 TTGATACTTTCAACTTTTTTCCAAAAATATTTTTTGGAAACTTTTATTTTCAAG
66 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAG
*
24612318 AAAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGGAAAA
1 GAAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGGAAAA
* *
24612383 TTGATACTTTCAACTTTTCCTCCAAAATTTTTTTTT
66 TTGATACTTTCAACTTTTCC-CCAAAAATATTTTTT
24612419 ATTTTTATTT
Statistics
Matches: 538, Mismatches: 25, Indels: 29
0.91 0.04 0.05
Matches are distributed among these distances:
116 46 0.09
117 81 0.15
118 74 0.14
119 191 0.36
120 38 0.07
121 48 0.09
124 2 0.00
125 35 0.07
126 23 0.04
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (119 bp):
GAAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGGAAAA
TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAG
Found at i:24612467 original size:29 final size:27
Alignment explanation
Indices: 24612432--24612491 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 27
24612422 TTTATTTAAA
* *
24612432 GAAAATATATAATAAAACAAAATAAAAGT
1 GAAAATAGATAA-AAAACAAAA-AAAAAT
*
24612461 GAAAATAGATAAAAAATAAAAAAAAAT
1 GAAAATAGATAAAAAACAAAAAAAAAT
24612488 GAAA
1 GAAA
24612492 GTAAAACAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 9 0.32
28 8 0.29
29 11 0.39
ACGTcount: A:0.73, C:0.02, G:0.08, T:0.17
Consensus pattern (27 bp):
GAAAATAGATAAAAAACAAAAAAAAAT
Found at i:24612513 original size:17 final size:16
Alignment explanation
Indices: 24612442--24612514 Score: 65
Period size: 17 Copynumber: 4.4 Consensus size: 16
24612432 GAAAATATAT
*
24612442 AATAAAACAAAATAAA
1 AATAAAAAAAAATAAA
* * * *
24612458 AGTGAAAATAGATAAAA
1 AATAAAAAAAAAT-AAA
*
24612475 AATAAAAAAAAATGAA
1 AATAAAAAAAAATAAA
*
24612491 AGTAAAACAAAAATAAA
1 AATAAAA-AAAAATAAA
24612508 AATAAAA
1 AATAAAA
24612515 TAAAGATGAA
Statistics
Matches: 42, Mismatches: 13, Indels: 3
0.72 0.22 0.05
Matches are distributed among these distances:
16 16 0.38
17 26 0.62
ACGTcount: A:0.77, C:0.03, G:0.07, T:0.14
Consensus pattern (16 bp):
AATAAAAAAAAATAAA
Found at i:24612515 original size:11 final size:11
Alignment explanation
Indices: 24612450--24612518 Score: 54
Period size: 11 Copynumber: 6.2 Consensus size: 11
24612440 ATAATAAAAC
*
24612450 AAAATAAAAGTG
1 AAAATAAAA-TA
*
24612462 AAAAT-AGATAA
1 AAAATAAAAT-A
24612473 AAAATAAAA-A
1 AAAATAAAATA
*
24612483 AAAATGAAAGTA
1 AAAAT-AAAATA
24612495 AAACA-AAAATA
1 AAA-ATAAAATA
24612506 AAAATAAAATA
1 AAAATAAAATA
24612517 AA
1 AA
24612519 GATGAAAGAA
Statistics
Matches: 46, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
10 8 0.17
11 26 0.57
12 11 0.24
13 1 0.02
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.14
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:24612555 original size:4 final size:4
Alignment explanation
Indices: 24612548--24612594 Score: 60
Period size: 4 Copynumber: 11.8 Consensus size: 4
24612538 AACCTAATCT
* *
24612548 AATA AATA AAAA GAATA AA-A AATA AATA AATA AACA AATA AATA AAT
1 AATA AATA AATA -AATA AATA AATA AATA AATA AATA AATA AATA AAT
24612595 TCAAAAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
3 3 0.08
4 31 0.84
5 3 0.08
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (4 bp):
AATA
Found at i:24613520 original size:21 final size:22
Alignment explanation
Indices: 24613491--24613567 Score: 90
Period size: 20 Copynumber: 3.7 Consensus size: 22
24613481 AAAAAAAGAG
24613491 AATTAAAAATAATAATAAGATA
1 AATTAAAAATAATAATAAGATA
* *
24613513 AATTAAAAATACT-ACAAGATA
1 AATTAAAAATAATAATAAGATA
*
24613534 AA-TAAAAAAAATAATAA-ATA
1 AATTAAAAATAATAATAAGATA
*
24613554 AATT-ATAATAATAA
1 AATTAAAAATAATAA
24613568 ATATATAACT
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
20 21 0.46
21 13 0.28
22 12 0.26
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (22 bp):
AATTAAAAATAATAATAAGATA
Found at i:24613995 original size:41 final size:41
Alignment explanation
Indices: 24613914--24614116 Score: 246
Period size: 41 Copynumber: 4.9 Consensus size: 41
24613904 TTCTCTAAGT
* * * * *
24613914 AGAGGCTCAACGACTTTGAAAAACATAAATGGCTCCTCTAATC
1 AGAGGCACCACGACTTTG-GAAA-ATAAATTGCTCCTCTAAAC
* *
24613957 AGAGGCTCAACGACTTTGGAAAATAAATTGCTCCTCTAAAC
1 AGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAAC
*
24613998 AGAGGCACCACGACTTT-GAAAAGTAAATTACTCCTCTAAAC
1 AGAGGCACCACGACTTTGGAAAA-TAAATTGCTCCTCTAAAC
* * *
24614039 AGAGGCACCACAACATTGGAAAGTAAATTGCTCCTCTAAAC
1 AGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAAC
* *
24614080 AGAGGCACCATGACTTTGGGAAAGTAAATTGCTCCTC
1 AGAGGCACCACGACTTT-GGAAAATAAATTGCTCCTC
24614117 GACAATCATG
Statistics
Matches: 144, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
40 5 0.03
41 95 0.66
42 26 0.18
43 18 0.12
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (41 bp):
AGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAAC
Found at i:24615146 original size:8 final size:8
Alignment explanation
Indices: 24615127--24615192 Score: 82
Period size: 8 Copynumber: 8.0 Consensus size: 8
24615117 TTCATTCACT
24615127 TTTTTTCA
1 TTTTTTCA
24615135 -TTTTTCA
1 TTTTTTCA
24615142 -TTTTTCA
1 TTTTTTCA
24615149 TTTTTTCA
1 TTTTTTCA
24615157 TGTTTTTCA
1 T-TTTTTCA
24615166 TTTTTTTTCA
1 --TTTTTTCA
24615176 TTTTTTCA
1 TTTTTTCA
24615184 TTTTCTTCA
1 TTTT-TTCA
24615193 AGCATAGTAT
Statistics
Matches: 53, Mismatches: 0, Indels: 9
0.85 0.00 0.15
Matches are distributed among these distances:
7 14 0.26
8 20 0.38
9 11 0.21
10 7 0.13
11 1 0.02
ACGTcount: A:0.12, C:0.14, G:0.02, T:0.73
Consensus pattern (8 bp):
TTTTTTCA
Found at i:24615146 original size:17 final size:18
Alignment explanation
Indices: 24615135--24615187 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
24615125 CTTTTTTTCA
24615135 TTTTTCA-TTTTTCA--T
1 TTTTTCATTTTTTCATTT
24615150 TTTTTCATGTTTTTCATTT
1 TTTTTCAT-TTTTTCATTT
24615169 TTTTTCATTTTTTCATTT
1 TTTTTCATTTTTTCATTT
24615187 T
1 T
24615188 CTTCAAGCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
15 7 0.21
17 7 0.21
18 11 0.32
19 9 0.26
ACGTcount: A:0.11, C:0.11, G:0.02, T:0.75
Consensus pattern (18 bp):
TTTTTCATTTTTTCATTT
Done.