Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 249 of 402
Found at i:24615187 original size:7 final size:7
Alignment explanation
Indices: 24615128--24615170 Score: 59
Period size: 7 Copynumber: 5.7 Consensus size: 7
24615118 TCATTCACTT
24615128 TTTTTCA
1 TTTTTCA
24615135 TTTTTCA
1 TTTTTCA
24615142 TTTTTCA
1 TTTTTCA
24615149 TTTTTTCA
1 -TTTTTCA
24615157 TGTTTTTCA
1 --TTTTTCA
24615166 TTTTT
1 TTTTT
24615171 TTTCATTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
7 19 0.58
8 7 0.21
9 7 0.21
ACGTcount: A:0.12, C:0.12, G:0.02, T:0.74
Consensus pattern (7 bp):
TTTTTCA
Found at i:24625658 original size:60 final size:58
Alignment explanation
Indices: 24625591--24626046 Score: 652
Period size: 59 Copynumber: 7.7 Consensus size: 58
24625581 TCTTGTGCAG
*
24625591 GGAAAATTGATACTTTCAACTTTTCCTTAAAAATTGATTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-T-ATTTTTTTGAAAATTTATTTTTAA
24625651 GGAAAATTGATACTTTCAACTTTTCC-CAAAAA-ATTGATTTTTTGAAAATTTA--TTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-T--TTTTTTGAAAATTTATTTTTAA
* * * *
24625708 GGAAAATTGATAATTTCGACTTTTCCCCAAAAATATTTTTTTGAAAACTTTTATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAA--TTTATTTTTAA
24625768 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTGAAAATTTATTTTTAA
* *
24625827 GGAAAATTGATACTTTCAACTTTTCC-CAAAAAATATTTTTTGGAAAATTTTATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTGAAAA-TTTATTTTTAA
*
24625886 GGAAAATTGATACTTTCAACTTTTACTCAAAAATTGATTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-T-ATTTTTTTGAAAATTTATTTTTAA
* * * *
24625946 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTT-ATTTTTAA
24626005 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
24626047 TATTTTTATT
Statistics
Matches: 360, Mismatches: 20, Indels: 33
0.87 0.05 0.08
Matches are distributed among these distances:
56 12 0.03
57 30 0.08
58 37 0.10
59 152 0.42
60 105 0.29
61 24 0.07
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAA
Found at i:24626047 original size:119 final size:119
Alignment explanation
Indices: 24625591--24626047 Score: 703
Period size: 119 Copynumber: 3.9 Consensus size: 119
24625581 TCTTGTGCAG
** * *
24625591 GGAAAATTGATACTTTCAACTTTTCCTTAAAAATTGATTTTTTTGAAAA-TTTATTTTTAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-T-ATTTTTTGGAAAATTTTATTTTCAAGGAA
*
24625655 AATTGATACTTTCAACTTTTCC-CAAAAA-ATTGATTTTTTGAAAATTTA--TTTAA
64 AATTGATACTTTCAACTTTTCCTCAAAAATATT-TTTTTTTGAAAATTTATTTTTAA
* * *
24625708 GGAAAATTGATAATTTCGACTTTTCCCCAAAAATATTTTTTTGAAAACTTTTATTTTCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAA-TTTTATTTTCAAGGAAA
24625773 ATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTTGAAAATTTATTTTTAA
65 ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAAATTTATTTTTAA
*
24625827 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTGGAAAATTTTATTTTCAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAATTTTATTTTCAAGGAAAA
* *
24625892 TTGATACTTTCAACTTTTACTCAAAAAT-TGATTTTTTTGAAAATTTATTTTTAA
66 TTGATACTTTCAACTTTTCCTCAAAAATAT-TTTTTTTTGAAAATTTATTTTTAA
* *
24625946 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTGATTTTCAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAATTTTATTTTCAAGGAAAA
24626011 TTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTT
66 TTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTT
24626048 ATTTTTATTT
Statistics
Matches: 314, Mismatches: 17, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
115 13 0.04
116 1 0.00
117 80 0.25
118 52 0.17
119 167 0.53
120 1 0.00
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.45
Consensus pattern (119 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAATTTTATTTTCAAGGAAAA
TTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAAATTTATTTTTAA
Found at i:24626139 original size:17 final size:17
Alignment explanation
Indices: 24626113--24626157 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
24626103 AAAAAATAAA
*
24626113 AAAAAGAAAAGTAAAAC
1 AAAAATAAAAGTAAAAC
* *
24626130 AAAAATAAAAATAAAAT
1 AAAAATAAAAGTAAAAC
*
24626147 AAAGATAAAAG
1 AAAAATAAAAG
24626158 AATATTAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.78, C:0.02, G:0.09, T:0.11
Consensus pattern (17 bp):
AAAAATAAAAGTAAAAC
Found at i:24626156 original size:50 final size:53
Alignment explanation
Indices: 24626057--24626161 Score: 121
Period size: 50 Copynumber: 2.0 Consensus size: 53
24626047 TATTTTTATT
* * **
24626057 TAAAGAAAATAGAATAATAAAACAAAATAAAAGTGAAAATAGATTTAAAA-AA
1 TAAAGAAAATAGAATAATAAAACAAAATAAAAATGAAAATAAAGATAAAAGAA
24626109 TAAA-AAAA-AGAA-AAGTAAAACAAAAATAAAAAT-AAAATAAAGATAAAAGAA
1 TAAAGAAAATAGAATAA-TAAAAC-AAAATAAAAATGAAAATAAAGATAAAAGAA
24626160 TA
1 TA
24626162 TTAAATAAAC
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
49 2 0.04
50 22 0.48
51 18 0.39
52 4 0.09
ACGTcount: A:0.73, C:0.02, G:0.09, T:0.16
Consensus pattern (53 bp):
TAAAGAAAATAGAATAATAAAACAAAATAAAAATGAAAATAAAGATAAAAGAA
Found at i:24626205 original size:23 final size:22
Alignment explanation
Indices: 24626179--24626221 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
24626169 AACCTAATCT
24626179 AATAAA-TAAAAAGAATAAAAATA
1 AATAAATTAAAAA-AA-AAAAATA
24626202 AATAAATTAAAAAAAAAAAA
1 AATAAATTAAAAAAAAAAAA
24626222 CTTGGAGCGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.26
23 8 0.42
24 6 0.32
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.16
Consensus pattern (22 bp):
AATAAATTAAAAAAAAAAAATA
Found at i:24627142 original size:21 final size:21
Alignment explanation
Indices: 24627118--24627181 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
24627108 AACAGGTAAT
24627118 TAAAAATAATAATAAGATAAA
1 TAAAAATAATAATAAGATAAA
* *
24627139 TAAAAAATACT-ACAAGATAAA
1 T-AAAAATAATAATAAGATAAA
*
24627160 TAAAAA-AATAATAA-ATATA
1 TAAAAATAATAATAAGATAAA
24627179 TAA
1 TAA
24627182 CTAGATAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
19 9 0.25
20 8 0.22
21 11 0.31
22 8 0.22
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.23
Consensus pattern (21 bp):
TAAAAATAATAATAAGATAAA
Found at i:24627147 original size:22 final size:23
Alignment explanation
Indices: 24627119--24627173 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 23
24627109 ACAGGTAATT
*
24627119 AAAAATAATAATAAGATAAAT-A
1 AAAAATAATAACAAGATAAATAA
*
24627141 AAAAATACT-ACAAGATAAATAA
1 AAAAATAATAACAAGATAAATAA
24627163 AAAAATAATAA
1 AAAAATAATAA
24627174 ATATATAACT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 10 0.36
22 17 0.61
23 1 0.04
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.20
Consensus pattern (23 bp):
AAAAATAATAACAAGATAAATAA
Found at i:24627191 original size:31 final size:31
Alignment explanation
Indices: 24627128--24627244 Score: 98
Period size: 31 Copynumber: 3.8 Consensus size: 31
24627118 TAAAAATAAT
* * *
24627128 AATAAGATAAATAAAAAATACTA-CA-AGATA
1 AATAAAATAAATAATAAATA-TATAACAGATA
24627158 AATAAAA-AAATAATAAATATATAACTAGATA
1 AATAAAATAAATAATAAATATATAAC-AGATA
* * *
24627189 AATAAAATACATATATAGATAT-TAACAGAGA
1 AATAAAATAAATA-ATAAATATATAACAGATA
* *
24627220 AAAAAAATAAATAAATAAAGATATA
1 AATAAAATAAAT-AATAAATATATA
24627245 CATATATTAA
Statistics
Matches: 70, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
28 2 0.03
29 12 0.17
30 6 0.09
31 32 0.46
32 11 0.16
33 7 0.10
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.23
Consensus pattern (31 bp):
AATAAAATAAATAATAAATATATAACAGATA
Found at i:24627525 original size:26 final size:26
Alignment explanation
Indices: 24627489--24627544 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
24627479 TGGGTTGACT
24627489 TAAGCATACGGAATTCATCCCCAGTC
1 TAAGCATACGGAATTCATCCCCAGTC
* * *
24627515 TAAGTATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAATTCATCCCCAGTC
24627541 TAAG
1 TAAG
24627545 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAATTCATCCCCAGTC
Found at i:24627821 original size:159 final size:158
Alignment explanation
Indices: 24627644--24628020 Score: 391
Period size: 158 Copynumber: 2.4 Consensus size: 158
24627634 GTCGGTTGAA
* * *
24627644 CGCCCGCACGCCCGTTTCGTGGGTTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
1 CGCCCGCACGCTCGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAA
* * * * *
24627709 CCGAACCGAGGGTTGTGGCAGCGGGACCGACAACACATAGAGGGGGACCGGGCCGATCCCCGGCT
66 CCGAACCGAGGGTTGCGACAGCGGGACCGACAACACACAG-GGGGGAACGGGCCGATCCCCAGCT
* **
24627774 TGCGTATTATTCCTCTACGGTCGACTCAG
130 TGCGTATTATGCCTCTACGACCGACTCAG
* * ** *
24627803 CGCCCGCATGCTCGTTTCGTGGG-TTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCG
1 CGCCCGCACGCTCGTTTCGTGGGTTTG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCC
* * ** * * ** * *
24627866 AATCGGACCGAGGGTTGCGACAGTTGGATCGACAGCATGCAGGGGGGAATGGGTCGATCCCCAGC
64 AACCGAACCGAGGGTTGCGACAGCGGGACCGACAACACACAGGGGGGAACGGGCCGATCCCCAGC
* * *
24627931 TTGCGTATTCTGCCTCTCCGACCGACTGAG
129 TTGCGTATTATGCCTCTACGACCGACTCAG
* * * * *
24627961 CACCTGCACGATCGTTTCGT-GATTTCACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CGCCCGCACGCTCGTTTCGTGGGTTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
24628021 ACACGGAGTT
Statistics
Matches: 176, Mismatches: 37, Indels: 11
0.79 0.17 0.05
Matches are distributed among these distances:
157 4 0.02
158 91 0.52
159 78 0.44
160 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
CGCCCGCACGCTCGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAA
CCGAACCGAGGGTTGCGACAGCGGGACCGACAACACACAGGGGGGAACGGGCCGATCCCCAGCTT
GCGTATTATGCCTCTACGACCGACTCAG
Found at i:24629568 original size:158 final size:159
Alignment explanation
Indices: 24629199--24629591 Score: 384
Period size: 158 Copynumber: 2.5 Consensus size: 159
24629189 GTATTTTGCT
* * * * *
24629199 TCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGATTAGGCATAGGGAGTTTATTC
1 TCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
* * * ** * ** *
24629264 CATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGGGACTGGCAGTATATAGAGGGCGACC
66 CATGTCTAAGCCCCAGCCAGACCGAGGGTCGTGGCAGCAGGACTGACAACACATAGAGGGCGACC
*
24629329 TGGTCGATCCCCGACTTGAGCATTATGCC
131 GGGTCGATCCCCGACTTGAGCATTATGCC
* * * * * ** * *
24629358 TCTTCGGTC-AGCTCAGCGCCCGCACTCTCATTTCGTGGGTTAACTTATGCATATGGAGTTCATT
1 TCTCCGATCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
** * * *
24629422 CCCA-GTCTAAG-ATCGGACCAGACCGAGGGTCGTGGCAGCAGGA-TCGACAACACATCG-GGGG
65 -CCATGTCTAAGCCCCAG-CCAGACCGAGGGTCGTGGCAGCAGGACT-GACAACACATAGAGGGC
* * * * *
24629483 GATCGGGTCGATCCCTGGCTTGCGCATTCTGCC
127 GACCGGGTCGATCCCCGACTTGAGCATTATGCC
*
24629516 TCTCCGATCGACTGAGCG-CCGACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT
1 TCTCCGATCGACTGAGCGCCCG-CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
24629580 CCATGTCTAAGC
65 CCATGTCTAAGC
24629592 ATACGAAGTT
Statistics
Matches: 183, Mismatches: 43, Indels: 16
0.76 0.18 0.07
Matches are distributed among these distances:
157 6 0.03
158 88 0.48
159 86 0.47
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (159 bp):
TCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
CATGTCTAAGCCCCAGCCAGACCGAGGGTCGTGGCAGCAGGACTGACAACACATAGAGGGCGACC
GGGTCGATCCCCGACTTGAGCATTATGCC
Found at i:24629600 original size:26 final size:26
Alignment explanation
Indices: 24629564--24629616 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24629554 GTTGGCTTAG
24629564 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
24629590 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
24629616 G
1 G
24629617 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:24630321 original size:26 final size:26
Alignment explanation
Indices: 24630285--24630337 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24630275 GTTGACTTAG
*
24630285 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGACTAA
* *
24630311 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACAGAGTTCATCCCCAGACTAA
24630337 G
1 G
24630338 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGACTAA
Found at i:24632687 original size:26 final size:26
Alignment explanation
Indices: 24632651--24632703 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24632641 GTTGGCTTAG
24632651 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCATTTCCA-GTCTAA
*
24632677 GCATGCGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
24632703 G
1 G
24632704 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:24633338 original size:20 final size:20
Alignment explanation
Indices: 24633268--24633351 Score: 78
Period size: 20 Copynumber: 4.1 Consensus size: 20
24633258 AAGAAAAAAA
* *
24633268 AATAGATAATTAAAAATAAT
1 AATAAATAAATAAAAATAAT
*
24633288 AATAAGATAAATCAAAAATACT
1 AATAA-ATAAAT-AAAAATAAT
** *
24633310 ACGAGATAAATAAAAATAAT
1 AATAAATAAATAAAAATAAT
* *
24633330 AATAAATAAATTATAATAAT
1 AATAAATAAATAAAAATAAT
24633350 AA
1 AA
24633352 ATATATAACT
Statistics
Matches: 50, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
20 29 0.58
21 11 0.22
22 10 0.20
ACGTcount: A:0.65, C:0.04, G:0.05, T:0.26
Consensus pattern (20 bp):
AATAAATAAATAAAAATAAT
Found at i:24633340 original size:14 final size:14
Alignment explanation
Indices: 24633323--24633375 Score: 56
Period size: 14 Copynumber: 3.8 Consensus size: 14
24633313 AGATAAATAA
24633323 AAATAATAATAAAT
1 AAATAATAATAAAT
*
24633337 AAATTATAAT-AAT
1 AAATAATAATAAAT
*
24633350 AAATATATAACTAGAT
1 AAATA-ATAA-TAAAT
24633366 AAATAA-AATA
1 AAATAATAATA
24633376 CATATATAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
13 9 0.27
14 15 0.45
15 2 0.06
16 7 0.21
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (14 bp):
AAATAATAATAAAT
Found at i:24633347 original size:17 final size:16
Alignment explanation
Indices: 24633315--24633354 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
24633305 ATACTACGAG
24633315 ATAAATAAAAATAATA
1 ATAAATAAAAATAATA
*
24633331 ATAAATAAATTATAATA
1 ATAAATAAA-AATAATA
24633348 ATAAATA
1 ATAAATA
24633355 TATAACTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATAAATAAAAATAATA
Found at i:24633495 original size:13 final size:12
Alignment explanation
Indices: 24633477--24633513 Score: 56
Period size: 13 Copynumber: 2.9 Consensus size: 12
24633467 AAATTCACAA
24633477 AAAAATAAAACAT
1 AAAAATAAAA-AT
24633490 AAAAATAAAAAT
1 AAAAATAAAAAT
24633502 ACAAAATAAAAA
1 A-AAAATAAAAA
24633514 CCAAATTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 3 0.13
13 20 0.87
ACGTcount: A:0.81, C:0.05, G:0.00, T:0.14
Consensus pattern (12 bp):
AAAAATAAAAAT
Found at i:24633497 original size:6 final size:6
Alignment explanation
Indices: 24633477--24633513 Score: 56
Period size: 6 Copynumber: 5.8 Consensus size: 6
24633467 AAATTCACAA
24633477 AAAAAT AAAACAT AAAAAT AAAAAT ACAAAAT AAAAA
1 AAAAAT AAAA-AT AAAAAT AAAAAT A-AAAAT AAAAA
24633514 CCAAATTGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 17 0.59
7 12 0.41
ACGTcount: A:0.81, C:0.05, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:24634228 original size:26 final size:26
Alignment explanation
Indices: 24634198--24634250 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24634188 GTTGACTTAG
24634198 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
24634224 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
24634250 G
1 G
24634251 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:24634623 original size:527 final size:519
Alignment explanation
Indices: 24633594--24634765 Score: 1210
Period size: 527 Copynumber: 2.2 Consensus size: 519
24633584 CAGCTGCCCC
* * * *
24633594 ACGCATTATGCCTCTCCGGTCGGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
1 ACGCATTATGCCTCTTCGCT-GGCCTCTACG-TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
** * * * *
24633659 TGACTTAGGCATTTGGAGTGCATCCCCAGTCTAAGCATATGGAGTTCAGTCTCAGTCTAAAGATC
64 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AAGATC
* * * * *
24633724 GGATGGAACTGAAGGTTCGCAAGGTAGTAGGATCGATAGCACGAAGGAGGGACTGGGCCGATCCC
128 GGACGGAACTGAAGGTTCACAAGGTAGCAGGATCGATAGCACGAAGGAGGGACCGGGCCAATCCC
* *
24633789 CGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCACCCGCACACCCGTTTCGTGGGTTGGCTTA
193 CGGCTTACGCATTCTGCCTCTCCGCTCGACTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTA
* * * * *
24633854 GGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTATGGCAGCGGGACCGAC
258 GGCATACGGAGTACATTCCATGTCTAAACCCTAGCCGGACCGAGAGTTATGGCAGCAGGACCGAC
* * * * *
24633919 AGCACGTAAAGGGGGACCGGGCCAATCCTCGGCTTGAGTATTATGCCTCTTCGATCGGCACAACG
323 AGCACGCAAAGGGGGACCGGGCCAATCCCCGACTTGAGTATTATGCCTCTTCGACCGGCACAACA
* *
24633984 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTATATTCCATGTCTAAGCCATAGCC
388 CCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTATATTCCATGTCTAAGCCATAGCC
* *
24634049 AGACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGATAGCACGTAGAGGGGGACCAGG-CT
453 AGACCAAGGGTTGCGGCAGCAGGA-C-ACA----GATC-A-AGCACGTAG-GGGGGACCAGGTC-
*
24634113 GATCCTC-GACTT
508 GATCCCCAG-CTT
*
24634125 ACGCATTATGCCTCTTCGACTGGCCTCTTCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
1 ACGCATTATGCCTCTTCG-CTGGCCTCTAC-GTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
24634190 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
64 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *
24634255 GACCGGATC-GAGGGTT-AC-A-GTAGCAGGATCGATAGGACGCAGG-GTGGACCGGGCTAATCC
129 GA-CGGAACTGAAGGTTCACAAGGTAGCAGGATCGATAGCACGAAGGAG-GGACCGGGCCAATCC
* ** * * *
24634315 CCGGCTTGCGCATTCTGCCTCTCCGC-CTGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCT
192 CCGGCTTACGCATTCTGCCTCTCCGCTC-GACTGAGCACCCGCACACCCATTTCGTGGGTTGGCT
* *
24634379 TAGGCATACGGAGTACATTCCATGTCTAAACCCTAGTCGTACCGAGAGTTATGGCAGCAGGACCG
256 TAGGCATACGGAGTACATTCCATGTCTAAACCCTAGCCGGACCGAGAGTTATGGCAGCAGGACCG
* ** * *
24634444 GCAGTGGGATCAACAGCACACAGAGGGGGACCGGGCTGATCCCCGACTTGCGTGTTATGCCTCTT
321 ACA----G--C-AC-G--CA-A-AGGGGGACCGGGCCAATCCCCGACTTGAGTATTATGCCTCTT
* ** * *
24634509 CGGCCGGTTCAACACCCACACGCTTGTTTCATGGGTTGACTTATGCATACGAAGT-TCATTCCCA
374 CGACCGGCACAACACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTAT-ATT-CCA
* * * *
24634573 -GTCTAAGATCATA-CCGGACTAAGGGTTGCGGCAGCAGGA-TCA-A-C-AGCACGTAGGGGGGA
437 TGTCTAAG-CCATAGCCAGACCAAGGGTTGCGGCAGCAGGACACAGATCAAGCACGTAGGGGGGA
24634632 CCAGGTCGATCCCCAGCTT
501 CCAGGTCGATCCCCAGCTT
* * * * *
24634651 GCGCATTCTGCCTC-TC-C--G-----AC-T-GGCTGAGCGCCCGCACGCTCATTTCGTTGGTTG
1 ACGCATTATGCCTCTTCGCTGGCCTCTACGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * * * *
24634705 GCTTAGGCATACGGAGTTCAT-TCCATGTCTAACCATACGGAGTTCATTCCTAGACTAAGAT
66 ACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
24634766 TTTGAGCGAC
Statistics
Matches: 548, Mismatches: 70, Indels: 64
0.80 0.10 0.09
Matches are distributed among these distances:
512 3 0.01
513 82 0.15
514 1 0.00
516 1 0.00
521 1 0.00
523 1 0.00
525 2 0.00
526 34 0.06
527 158 0.29
528 1 0.00
529 1 0.00
530 16 0.03
531 115 0.21
532 2 0.00
533 1 0.00
534 2 0.00
535 1 0.00
536 2 0.00
537 1 0.00
538 2 0.00
539 114 0.21
540 7 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (519 bp):
ACGCATTATGCCTCTTCGCTGGCCTCTACGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CGGAACTGAAGGTTCACAAGGTAGCAGGATCGATAGCACGAAGGAGGGACCGGGCCAATCCCCGG
CTTACGCATTCTGCCTCTCCGCTCGACTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTAGGC
ATACGGAGTACATTCCATGTCTAAACCCTAGCCGGACCGAGAGTTATGGCAGCAGGACCGACAGC
ACGCAAAGGGGGACCGGGCCAATCCCCGACTTGAGTATTATGCCTCTTCGACCGGCACAACACCC
ACACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTATATTCCATGTCTAAGCCATAGCCAGA
CCAAGGGTTGCGGCAGCAGGACACAGATCAAGCACGTAGGGGGGACCAGGTCGATCCCCAGCTT
Found at i:24634762 original size:26 final size:26
Alignment explanation
Indices: 24634712--24634762 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
24634702 TTGGCTTAGG
*
24634712 CATACGGAGTTCATTCCATGTCTAAC
1 CATACGGAGTTCATTCCATGACTAAC
24634738 CATACGGAGTTCATTCC-TAGACTAA
1 CATACGGAGTTCATTCCAT-GACTAA
24634763 GATTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATGACTAAC
Found at i:24636835 original size:26 final size:26
Alignment explanation
Indices: 24636799--24636851 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24636789 GTTGACTTAG
24636799 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
24636825 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
24636851 G
1 G
24636852 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:24637330 original size:26 final size:26
Alignment explanation
Indices: 24637301--24637353 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24637291 GTTGGCTTAG
24637301 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
24637327 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24637353 G
1 G
24637354 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24638397 original size:26 final size:26
Alignment explanation
Indices: 24638360--24638412 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24638350 GTTGACTTAG
24638360 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGTAGTTCATCCCCAGTCTAA
*
24638386 GCATACAG-AGTTCATTCCCAGTCTAA
1 GCATAC-GTAGTTCATCCCCAGTCTAA
24638412 G
1 G
24638413 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGTAGTTCATCCCCAGTCTAA
Found at i:24638891 original size:26 final size:26
Alignment explanation
Indices: 24638862--24638914 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24638852 GTTGGCTTAG
24638862 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
24638888 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24638914 G
1 G
24638915 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24640419 original size:405 final size:399
Alignment explanation
Indices: 24639636--24640433 Score: 949
Period size: 405 Copynumber: 2.0 Consensus size: 399
24639626 ACAAATTCCT
*
24639636 TAGAGCATTAATGAATTCCCCTCAAAATGTGATCCAAAGCAAGTAGGTATGAAACACAGCCAAGA
1 TAGAGCATTAATGAATTCCCCTCAAAACGTGATCCAAAGCAAGTAGGTATGAAACACAGCCAAGA
* *
24639701 AATTCAAAACCGCACTAATGGCTTTTATATCACAGTTTGAAACCATGCGAATGGTTTCTACACCT
66 AATTCAAAA-CGCACTAATGGCATTTATATCACAGTTTGAAACCATGCGAATGGTTTCTACACCC
* * * *
24639766 ATAATTGTGCCGAAAAATTTTGATAATTGAGTCTCCACAATCCTTTACAACATAAACTTAACAAT
130 ATAATTGTGCAGAAAAATTTCGATAATTGAGGCTCCAAAATCCTTTACAACATAAACTTAACAAT
* * * **
24639831 ATGAAAACATTAAAACCAATGCAAGTTAACCTATTTTCTAAATTTGAGCAAGTTTTAAAATGCTG
195 ATGAAAACATTAAAACCAAAGCAAGTTAACATATTTTCTAAATTGGAGCAAGTTTTAAAACACTG
* * * * * * * *
24639896 GATTCAAGATATTCAAATTCATTCCCATTTAAAAACTTGCTATAGTAGTTTTTTATGTTTTGAAA
260 GATTCAAGATATTCAAATTCATTCCCATTTAAAAACCTGCCAAAGCAATATTTCATATTTTGAAA
* * *
24639961 CCCGACCCTATCAAAAATCATTTTCAAAGCAAAACATAAAAGTTTAAAAGCATTAAGCTTTAAGT
325 CCCGACCCTAGCAAAAATCATTTTCAAAGCAAAACATAAAACTTCAAAAGCATTAAGCTTTAAGT
24640026 GCTCCGCCTA
390 GCTCCGCCTA
* * * * *
24640036 TAGAGCATTTATGAATTCCTCTCACAACGTGATCCAAAGCAAGTAGGTGTGAAACACTGCCAAGA
1 TAGAGCATTAATGAATTCCCCTCAAAACGTGATCCAAAGCAAGTAGGTATGAAACACAGCCAAGA
* * * ** * *
24640101 AATTCAAAA-TCATGTGAATGGCATTTATTTCACTAG-TTGAAAACTTTGCGAATGGTTTGTACG
66 AATTCAAAACGCA-CT-AATGGCATTTATATCAC-AGTTTG-AAACCATGCGAATGGTTTCTACA
** * * * *
24640164 CCCATAATTGTTTAGAAACAAATTTACG-TATTTGAGGCTCCAAAATCCTTTACAACTTATATTT
127 CCCATAATTGTGCAG-AA-AAATTT-CGATAATTGAGGCTCCAAAATCCTTTACAACATAAACTT
* * * *** *
24640228 AAC-ATGATGAAAACATTAATACCAAAGCAAGTTATCATGTTTTCTTCCTTGGATCAAGTTTTAA
189 AACAAT-ATGAAAACATTAAAACCAAAGCAAGTTAACATATTTTCTAAATTGGAGCAAGTTTTAA
* *
24640292 AACACTGGATTCATGATATATTTAAATTCATTCCCATTTAAAAACCTGCCAAAGCAATATTTCAT
253 AACACTGGATTCA--AGATATTCAAATTCATTCCCATTTAAAAACCTGCCAAAGCAATATTTCAT
* * * * *
24640357 ATTTT-AAAGCTCGACCCTAGCAAAAATCGTTTTCAAAGTAGAACATAAAACTTCACAAGCATTA
316 ATTTTGAAA-CCCGACCCTAGCAAAAATCATTTTCAAAGCAAAACATAAAACTTCAAAAGCATTA
*
24640421 AGCTTTGAGTGCT
380 AGCTTTAAGTGCT
24640434 TCACCTAAGT
Statistics
Matches: 331, Mismatches: 56, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
398 2 0.01
399 1 0.00
400 86 0.26
401 32 0.10
402 4 0.01
403 98 0.30
404 4 0.01
405 104 0.31
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.31
Consensus pattern (399 bp):
TAGAGCATTAATGAATTCCCCTCAAAACGTGATCCAAAGCAAGTAGGTATGAAACACAGCCAAGA
AATTCAAAACGCACTAATGGCATTTATATCACAGTTTGAAACCATGCGAATGGTTTCTACACCCA
TAATTGTGCAGAAAAATTTCGATAATTGAGGCTCCAAAATCCTTTACAACATAAACTTAACAATA
TGAAAACATTAAAACCAAAGCAAGTTAACATATTTTCTAAATTGGAGCAAGTTTTAAAACACTGG
ATTCAAGATATTCAAATTCATTCCCATTTAAAAACCTGCCAAAGCAATATTTCATATTTTGAAAC
CCGACCCTAGCAAAAATCATTTTCAAAGCAAAACATAAAACTTCAAAAGCATTAAGCTTTAAGTG
CTCCGCCTA
Found at i:24644734 original size:514 final size:511
Alignment explanation
Indices: 24642167--24650572 Score: 4961
Period size: 541 Copynumber: 16.2 Consensus size: 511
24642157 TTTTCAAAGC
* * *
24642167 AAAACATTAAGCTTTGAGTGCTCCTCCTAAGTTTGTGCATAATATATAAAAGCAAGTTAGGACAT
1 AAAACATTAAGCTTTGAGTGTTCC-CCTAAGTTTGTGCATAATATATAAAA-CAAGTTAGCACAC
* *
24642232 AATTAATCACATCGAGCACCAATAACAATTTCAAAAATCATATCCAAATATCAAGAGCATTCATA
64 AATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCATTCATA
* * * *
24642297 TGTAATCCCACAAATTCCTTAGAGCATCCATGAATTCTCCTAAAAATGTATCTAAAGTAAGTAAG
129 TGTAATCACACAAATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTA--TACA--AAGCAAG
* * *
24642362 TATGAAACACAAGGAAAAAATTAATATCGTGCAAATGGTTTTTATATCAAAGTTTGAAATTGTGC
190 TATGAAACACAACGAAAAAATTAAAATCGTGCAAATGGTTTTTATATCACAGTTTGAAATTGTGC
*
24642427 AAATGGTTTTTATGCCCATAATTATTTTAAAAATAAATTTTGATATTTTAAGCTCCAAAATCC-T
255 AAATGGTTTTTATGCCCATAATTA-TTCAAAAATAAATTTTGATATTTTAAGCTCCAAAATCCTT
* * *
24642491 TTATAACTTACACTTAACACAGTGAAAAATTAAAATCAATGCAAGTTATCATGTTTCTTTATTTG
319 TTATAACTTACACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTTTGTTTG
* *
24642556 AGCAAGTTTAAAACACTAGATTCAAGATATTCAAATGCATTCCCATATAAAAAGCTTGCTAAAAC
384 AGCAAGTTTAAAACACTA-ATTCAAGATATTCAAATTCATTCCCAT-TTAAAAGCTTGCTAAAAC
* * * * * * *
24642621 AATATTTCATAATTTAAAGATCGATCCTCGCAAAAATTGTTTTCAAAGCAAAACATAAAACATAA
447 AATATTTCATATTTTAAAGCTCGACCCTAGCAAAAATTATTTTCAAAGCAAAACATAAAACTTCA
* * * *
24642686 AAAATATTAAGCTTTGAGTGCTCCCCCTAAGTTTGTGCACAATATATAAAATAAGTTAGCACACA
1 AAAACATTAAGCTTTGAGTG-TTCCCCTAAGTTTGTGCATAATATATAAAACAAGTTAGCACACA
* * * *
24642751 ATTAATCACATTAAGCATCAATAACAATTTCACAAATCATATCTAAATTTCAAGAGCATTCATAT
65 ATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCATTCATAT
* * * *
24642816 GTAATCCCACAAATTTCTTAGAGCATTTACGAATTCTCCTAAAAATGTAT-CTAAAGCAAGTAAG
130 GTAATCACACAAATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTATAC-AAAGC----AAG
* * * * * *
24642880 TATGAAACACAATGAAAAAAATTAAAAACATGCAAATTGCTTTTATATCATAGTTTGAAATTGTG
190 TATGAAACACAACG-AAAAAATTAAAATCGTGCAAATGGTTTTTATATCACAGTTTGAAATTGTG
* * * * * *
24642945 CAAATGGGTTTTATACCCATAATTGTTGAAAAAACAAATTTTGATAATTTAAGCTCCAAAATCC-
254 CAAATGGTTTTTATGCCCATAATTATT-CAAAAATAAATTTTGATATTTTAAGCTCCAAAATCCT
* * * *
24643009 TTTATAACTTACACTTAACAC--TCAAAAATTAAAACTAATGCAAGTTATCCTATTTCTTTGTTT
318 TTTATAACTTACACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTTTGTTT
* * * *
24643072 GAGCAAGTTTAATACTCTAAGTTCAAGTTATTCGAATTCATTCCCATTTAAAAGCTTGCTAAAAC
383 GAGCAAGTTTAAAACACTAA-TTCAAGATATTCAAATTCATTCCCATTTAAAAGCTTGCTAAAAC
* * * * ** * * *
24643137 AATATTTCATATTTCAAAGCCCAACCATAGCAAAAATCGTTTTTAAAGTAAAACAAAAAAACTTC
447 AATATTTCATATTTTAAAGCTCGACCCTAGCAAAAATTATTTTCAAAGCAAAAC-ATAAAACTTC
24643202 A
511 A
* * * *
24643203 TAAATATTAAGCTTTGAGTGCTTCTCCTAAGTTTGTGCATAATTTATAAAACAAGTT---A-ACA
1 AAAACATTAAGCTTTGAGTG-TTCCCCTAAGTTTGTGCATAATATATAAAACAAGTTAGCACACA
* * * *
24643264 ATTAATCGCATCAAGCACCAATAACAATTTAACAAATCATA-CTTAAATATCATGAGCATTCATA
65 ATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATC-CAAATATCAAGAGCATTCATA
* * ** * * * *
24643328 TGTAAT-ACCATAAATTTCTTAGAGTGTTTATGAATTCTCCTAAAAATGTACTAAAGCAAGTAAA
129 TGTAATCA-CACAAATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTA-TACA--AAGCAAG
* * * * **
24643392 TATGAAACAAAATGAAAAACTTAAAATTGCACAAATGGTTTTTATATCACAGTTTGAAATTGTGC
190 TATGAAACACAACGAAAAAATTAAAATCGTGCAAATGGTTTTTATATCACAGTTTGAAATTGTGC
* * * *
24643457 AAATGATTTTTATGCCCATAATT-GTCTGAAAATAAATTTTGATATTTTAAGCTCCAAAAT-CGT
255 AAATGGTTTTTATGCCCATAATTATTC-AAAAATAAATTTTGATATTTTAAGCTCCAAAATCCTT
* * * *
24643520 TTATAACTTACACATAACACTGTGAAAAATTTAAACCAATGCAAGCTATCCA-GTTTCTTTGCTT
319 TTATAACTTACACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTAT-CATGTTTCTTTGTTT
* * * *
24643584 GAGCAATTTTAAAACACTGGATTCAAGATATTCAAATTCATTCCCATTTAAAAGCTTGGTAAAAG
383 GAGCAAGTTTAAAACACT-AATTCAAGATATTCAAATTCATTCCCATTTAAAAGCTTGCTAAAAC
* * * * *
24643649 AATATTTTATATTTTCAAGCTCGACCCTCGTAAAAATTATTTTCAAAGTAAAACATAAAACTTCA
447 AATATTTCATATTTTAAAGCTCGACCCTAGCAAAAATTATTTTCAAAGCAAAACATAAAACTTCA
* * *
24643714 AAAACATTAAGCTTTGGGTGCTCCCCCTAAGTTTGTACATAATATATAAAACAAGTTAGCACACA
1 AAAACATTAAGCTTTGAGTG-TTCCCCTAAGTTTGTGCATAATATATAAAACAAGTTAGCACACA
* * *
24643779 ATTAATCACAACAAGCACCAATAACAATTTCACAACTCATATGCAAATATCAAGAGCATTCATAT
65 ATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCATTCATAT
*
24643844 GTAATCCCAGGAATTCATGAATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTAT-CTAAAG
130 GTAAT--CA--CA--CA--AATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTATAC-AAAG
* *
24643908 CAAGTAAGTATGAAACACAACTAAAAAATTAAAATCGTGCAAATGGTTTTTATATCACAATTTGA
186 C----AAGTATGAAACACAACGAAAAAATTAAAATCGTGCAAATGGTTTTTATATCACAGTTTGA
* * * * *
24643973 AATTGTGCAAACGGTGTTTATGCCCATTATTATTCAAAAATAAATTTTGATATTTTAAG-TGTCG
247 AATTGTGCAAATGGTTTTTATGCCCATAATTATTCAAAAATAAATTTTGATATTTTAAGCT-CCA
* * * *
24644037 AAATCATTTTATAACTTACATTTAACACTGTGAAAAATTAAAACCAATGTAAGTTATCTTGTTTT
311 AAATCCTTTTATAACTTACACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATG-TTT
* * * *
24644102 GTTTGTTTGAGCAAGTTTAAAACACTAGATTCAAGATAGTCAAATTCTTTCCTATTTAAAAGCTT
375 CTTTGTTTGAGCAAGTTTAAAACACTA-ATTCAAGATATTCAAATTCATTCCCATTTAAAAGCTT
* * ** *
24644167 GCTAAAATAATATTTCATATTTTAAAGC-CTGACCCAAGCAAAAATCGTTTTCAAACCAAAACAT
439 GCTAAAACAATATTTCATATTTTAAAGCTC-GACCCTAGCAAAAATTATTTTCAAAGCAAAACAT
*
24644231 AAAACCTCA
503 AAAACTTCA
*
24644240 AAAACATTAAGCTTTGAGTGTTCCCCTAAGTTTGTGGATAATATATAAAAACAAGTTAGCACACA
1 AAAACATTAAGCTTTGAGTGTTCCCCTAAGTTTGTGCATAATATAT-AAAACAAGTTAGCACACA
** * *
24644305 ATTAATCACATCAATTACCAATAACAATTTCAAAAATCATATCCAAATATCAAAAGCATTTC-TA
65 ATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCA-TTCATA
* * ** *
24644369 TGTAATCACATAAATTCCTTAAAGCGCTCGTGAATTCTCCTAAAAATGTATACAAAGCAAGTATG
129 TGTAATCACACAAATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTATACAAAGCAAGTATG
* *
24644434 AAACAAAACGAAAAAATTAAAATCGTGCAAATGGTTTTCATATCACAGTTTGAAATTGTGCAAAT
194 AAACACAACGAAAAAATTAAAATCGTGCAAATGGTTTTTATATCACAGTTTGAAATTGTGCAAAT
* * *
24644499 GGTTTTTACGCCCATAATTATTCAAAAACAAATTCTGATATTTTAAGCTCCAAAATCCTTTTATA
259 GGTTTTTATGCCCATAATTATTCAAAAATAAATTTTGATATTTTAAGCTCCAAAATCCTTTTATA
* * * *
24644564 ACTTACACTTAACACTGTAAAAAATTAAAACTAATGCAAGTTATAATGTTTCTTTGTTTGAGCAT
324 ACTTACACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTTTGTTTGAGCAA
* * * *
24644629 TTTTAAAACACTGAATTCAAGGTATTCAAATTCATTCACATTTAAAAGCTTGCTAAAAGAATATT
389 GTTTAAAACACT-AATTCAAGATATTCAAATTCATTCCCATTTAAAAGCTTGCTAAAACAATATT
* *
24644694 TCATATTTTAAAGCTCGACTCTAGCAAAATTTATTTTTCAAAGCAAAACATAAAACTTCA
453 TCATATTTTAAAGCTCGACCCTAGCAAAAATTA-TTTTCAAAGCAAAACATAAAACTTCA
* * * * *
24644754 AAAACATTAAGCTTTGACTACTCCCCCTAAGTTTGCGGATAATATAT--AACAAGTTAGCACACA
1 AAAACATTAAGCTTTGAGT-GTTCCCCTAAGTTTGTGCATAATATATAAAACAAGTTAGCACACA
* * * *
24644817 ATTAATCACATCAAGCATCAATGACAATTTCACAAATCATATCCAAATATCATGAGCATTAATAT
65 ATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCATTCATAT
* * * * * *
24644882 GTAATCCCACAAATTCTTTAGAGCATTTATGAATTCTCATAAAAATGTATCTAAAGAAAGTAAGT
130 GTAATCACACAAATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTA--T--ACAAAGCAAGT
** ** * * *
24644947 ATGAAACACAACGAAAAAATTAAAAATCAAGCAAATTCTTTTTATTTAATAGTTTGAAATTGTGC
191 ATGAAACACAACGAAAAAATT-AAAATCGTGCAAATGGTTTTTATATCACAGTTTGAAATTGTGC
* * * * * *
24645012 AGATGATTTTTATGCCCAGAATTGTTCAAAAATAAATTTTAATATTTTAAGCTCAAAAAT-CTTT
255 AAATGGTTTTTATGCCCATAATTATTCAAAAATAAATTTTGATATTTTAAGCTCCAAAATCCTTT
* *
24645076 TATAACTTACACTTAACATTGTGAAAAATTAAAACCAATGCAAGTTATTC-TGTTT-TTTGTCTG
320 TATAACTTACACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTA-TCATGTTTCTTTGTTTG
* * *
24645139 AGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTCCCATTTAAAAACTTGCTAAAACA
384 AGCAAGTTTAAAACACT-AATTCAAGATATTCAAATTCATTCCCATTTAAAAGCTTGCTAAAACA
** * * * *
24645204 ATATTTCATATTTTAAAATTCAACCCTAGCAAAAATCATTTTGAAAGCAAAATATAAAACTTCA
448 ATATTTCATATTTTAAAGCTCGACCCTAGCAAAAATTATTTTCAAAGCAAAACATAAAACTTCA
*
24645268 AAAACATTAAGCTTTGAGTGCTCCCCATAAGTTTGTGCATAATATATAAAAACAAGTTAGCACAC
1 AAAACATTAAGCTTTGAGTGTTCCCC-TAAGTTTGTGCATAATATAT-AAAACAAGTTAGCACAC
* *
24645333 AATTAATCATATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATTAAGAGCATTCATA
64 AATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCATTCATA
* * *
24645398 TGTAATCACACAAATTCCTTATAGCATTCATGAATTCCCCTAAAAATTTAT-CTAAAGCAAGTAA
129 TGTAATCACACAAATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTATAC-AAAGC----AA
* *
24645462 GTATGAAACACAACGAAAAAAATTAAAATCATGCAAATGGTTTTTAT-TCCCA---T--AATTGT
189 GTATGAAACACAACG-AAAAAATTAAAATCGTGCAAATGGTTTTTATATCACAGTTTGAAATTG-
* * * * ** * ** * *** * * **
24645521 TCAGAAACAAATTTTGATATTTTAAGATCCAAAATCCTTTACAACTTATAGTTAACACAATGAAA
252 T--G---CAAA---TGGT-TTTTATG-CCCATAATTATTCA-AAAATA-AATTTTGATATTTTAA
** * *** ** * ** * * *
24645586 AAT-TAAAA--CAAATGCAAGTTATC-CTGTTTC-CTTGTTTGAGCAAGTTCAAAACACTGAATT
305 GCTCCAAAATCCTTTTATAACTTA-CACT-TAACAC-TG--TGA-AAAATT-AAAAC-C--AATG
* * ** ** ** * * * *
24645646 CATGATATTCA-AATTCATTCCCATTT-AAAAACTTGCTAAAACAATAATTCATG-T-TTTAAA-
360 CAAGTTA-TCATGTTTC-TT--TGTTTGAGCAAGTT--TAAAACACTAATTCAAGATATTCAAAT
* *** * * * * * *
24645706 GC-TTGACCCTAGCAAAAATTGTTTTTAAAGC-AAAACATAAAACTTCAAAAACTTT-AAGCTTT
419 TCATT--CCC-ATTTAAAA--G--CTT---GCTAAAAC--AATATTTC--ATATTTTAAAGC-TC
* ** *** * * *
24645768 GAGTCCTCCCCCTAAGT-TTGT----GCATAATATATAAAA----A
469 GA-CCCTAGCAAAAATTATTTTCAAAGCA-AA-ACATAAAACTTCA
* * **** * * * * * *
24645805 ACAA-GTT-AGCACACAATTATTCACGTCAA------GCACCAATA-ACCAAATATCAAG--AGC
1 AAAACATTAAGC-TTTGAGTGTTCCCCT-AAGTTTGTGCA-TAATATA-TAAA-A-CAAGTTAGC
** * * *** * ** *
24645859 ATTCATTTGTAATCCCA-CAAATTCC-TTAGAGC-ATTT-ATGAAT--TCTCCTAAAAATGTATC
60 ACACA-AT-TAATCACATCAAGCACCAATA-A-CAATTTCACAAATCATATCC---AAA--TATC
* * * * * ** * *
24645918 TAA-ATCAAGTAAGTATG-AA--ACAC-AA----TGAAAAAATT-A--AAATCGTGC---AAATG
116 -AAGAGC-ATTCA-TATGTAATCACACAAATTCCTTAGAGCATTCATGAATTC-TCCTAAAAATG
** * ** * ** * * ** *
24645968 GCTTC----C-A-TAT------C-ACG----GTTTGAAATTATGCGAATCGTTTTTATGCCATAA
177 TATACAAAGCAAGTATGAAACACAACGAAAAAATTAAAATCGTGCAAATGGTTTTTATATCA-CA
* * ** * * * * ** * ** * * *
24646016 TTGTTCAAA---AACAAATTTTGATATTTTAAGCTTCAAAATCCTTTACAACTTACA-CTTAATA
241 GT-TTGAAATTGTGCAAA---TGGT-TTTTATGC-CCATAATTATTCA-AAAATAAATTTTGATA
** ** * ** ** * ***** **
24646077 CTTAAAAAAAT-TAAAA-CC-AATGCAAGTTATC-CTGTTTTTTTGTTTGAGCAAGTTTAAAACA
299 -TT-TTAAGCTCCAAAATCCTTTTATAACTTA-CACT-TAACACTG--TGA--AAAATTAAAAC-
* * * *** * * * * * * * * * *
24646138 CTATATTCAAGATATTAAAATTCATTCCTATTTAAATACTAG-CTAAAATAATACTTC-ATATTT
355 C-A-ATGCAAGTTATCATGTTTC-TT--TGTTT-GA-GCAAGTTTAAAACACTAATTCAAGATAT
* * ** * * * ** * ** ** *
24646201 TAAAACTCGA--CCCTAGCTAAAATCATT-TTCAAAGA-AAAACAT-AAAACTTAAA---AAACA
413 TCAAATTC-ATTCCC-ATTTAAAAGC-TTGCT-AAA-ACAATATTTCATATTTTAAAGCTCGACC
* ** * * ** * ******
24646258 TTAAGCTTTAAGTGATCCTCTAAGTTTGTGTATAAAA-TAT-A
473 CT-AGC-AAAAATTATTTTCAAAG-CAAAACATAAAACT-TCA
* * * * *
24646299 AAAA-A-TAAG--TT-A--G--CACAC-AA-TTAAT-TACATCAA-ACACCAATAACAA-TT-TC
1 AAAACATTAAGCTTTGAGTGTTC-CCCTAAGTT--TGTGCAT-AATATA-TAA-AACAAGTTAGC
* * * * * * ** ** *
24646349 ACA-AATCATATC-CA--AA-TATCAAGAGC-A-TTCATATGT-A-AT---AATCCCACGA--AT
60 ACACAATTA-ATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCAT
* * * * * * *
24646400 TC----CT--T-----AGA-GCGTT----CAT----GAATGCTTCTAAAAATGTATGTAAAGCAA
124 TCATATGTAATCACACAAATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTA--TACA--AA
* * * * *
24646445 GTAAGTATGAAACACAAAGAAAAAATTAAAATCGTGCAACTTGTTTTTATATCACAGTTTGATAT
185 GCAAGTATGAAACACAACGAAAAAATTAAAATCGTGCAAATGGTTTTTATATCACAGTTTGAAAT
* * * * * * * * **
24646510 TGTGCAAATGGTTTTTCTACCTATAAGTGTTCAAAAACAATTTTTAATAGCTTAAGCTCCAAAAT
250 TGTGCAAATGGTTTTTATGCCCATAATTATTCAAAAATAAATTTTGATATTTTAAGCTCCAAAAT
* * * *
24646575 CC-TTTA-AACTTACACTTAACACTGTGAAAAATTGAAACAAATACAAGTTATCTTGTTTCTTTG
315 CCTTTTATAACTTACACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTTTG
* * *
24646638 TTT----AAGTTTAAAACATTTGATTCAAGATATTTAAATTCATTCCCATTTTAAAA-CTTGCTA
380 TTTGAGCAAGTTTAAAACA-CTAATTCAAGATATTCAAATTCATTCCCA-TTTAAAAGCTTGCTA
* * * * * * *
24646698 AAGCAATATTACATATTTTAAAGCTCAACTCTAGCAAAAATCATTTTCAGAGCGAAACATAAAAC
443 AAACAATATTTCATATTTTAAAGCTCGACCCTAGCAAAAATTATTTTCAAAGCAAAACATAAAAC
24646763 TTCA
508 TTCA
** * *
24646767 AAAACATTAAGCTTTGAGTACTCCCCTTAAGTTTGTGCATGATATATAAAAACAAGTTAGCACAA
1 AAAACATTAAGCTTTGAGTGTTCCCC-TAAGTTTGTGCATAATATAT-AAAACAAGTTAGCACAC
* * *
24646832 AACTAATCACATCGAGCACCAATAACAATTTCATAAATCATATCCAAATATCAAGAGCATTCATA
64 AATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCATTCATA
* * * * *
24646897 TGTAATCTCACAAATTCCTTAAAGCATTCATGAATTCT-CTCAAAAATATATTTAAAGCAAGTAA
129 TGTAATCACACAAATTCCTTAGAGCATTCATGAATTCTCCT-AAAAATGTA--TACA--AAGCAA
* * * *
24646961 GTATAAAACACAACG-AAAAATTAAAAT-ATGCAAATGATTTTTATATCACATTTTGAAATTGTG
189 GTATGAAACACAACGAAAAAATTAAAATCGTGCAAATGGTTTTTATATCACAGTTTGAAATTGTG
* * *
24647024 CAAATGATTTTTATGCCCATAATTGTTCAAAAATAAAATTTGATATTTTAAGCTCCAAAAT-CTT
254 CAAATGGTTTTTATGCCCATAATTATTCAAAAATAAATTTTGATATTTTAAGCTCCAAAATCCTT
* * *
24647088 TTATAACTTAGC-TTTAACACTGTGAGAAATTAAAACCAATGCAAGTTATCATGTTTCTTTATTT
319 TTATAACTTA-CACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTTTGTTT
* * * * **
24647152 GAGCAACTTTAAAATATTAGATTCAAGATAGTCAAATTCATTCTAATTTAAGAA-CTTGCTAAAA
383 GAGCAAGTTTAAAACACTA-ATTCAAGATATTCAAATTCATTCCCATTTAA-AAGCTTGCTAAAA
* * ***
24647216 TAAT-TTTCATATTTGAAAGCTCGATTTTAGCAAAAATTATTTTCAAAGCAAAACATAAAACTTC
446 CAATATTTCATATTTTAAAGCTCGACCCTAGCAAAAATTATTTTCAAAGCAAAACATAAAACTTC
24647280 -
511 A
* * * * * * *
24647280 AAAACTATTCATCTTTGAGTGCTCCCCTAAGTTTATACATGATATATAAAAACAAGTTAGCACAT
1 AAAAC-ATTAAGCTTTGAGTGTTCCCCTAAGTTTGTGCATAATATAT-AAAACAAGTTAGCACAC
* ** * * * *
24647345 AACTAATCGTATCGAGCACCAATAACAGTTTCATAAATCATATCCAAATATCAAGATCATTC--A
64 AATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCATTCATA
* * * * * * * * * * *
24647408 CGCAATC-C-TAAATAT-C-AAGAGCATTCAT--ATGTAGTCCCACAAAT-TCCT-TAGAGC-AT
129 TGTAATCACACAAAT-TCCTTAGAGCATTCATGAAT-T-CTCCTAAAAATGT-ATACAAAGCAAG
* * * ** * ****** * * ** *
24647464 TCATGAATTCTCGTAA--AAATATATCTAAAA-CAAGTAAGTATGAAACACA-ATGAAAAATTAA
190 T-ATGAA-ACAC--AACGAAA-AAAT-TAAAATCGTGCAA--ATGGTTTTTATATCACAGTTTGA
** * * * *
24647525 AATCATGCAAATGATTTTTATGCCCATAATTATTGAAAAACAAATTTTTATATTTTAAGCTCCAA
247 AATTGTGCAAATGGTTTTTATGCCCATAATTATTCAAAAATAAATTTTGATATTTTAAGCTCCAA
* * *
24647590 AATTC-TTTATAACTTACACTTAACACTCTGAGAAATTAAAACC--T-C-A--T-TC-TGTTTCT
312 AATCCTTTTATAACTTACACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCT
* * ** * *
24647646 TTGTTTGAGTAAGTTTAAAAACACTGGATTCAAGATATTCAAATTTGTTCCCTTTTAAAAACTTG
377 TTGTTTGAGCAAGTTT-AAAACACT-AATTCAAGATATTCAAATTCATTCCCATTTAAAAGCTTG
* * * *
24647711 CTAAAATAATATTTCATATTTTAAAACTCGACTCTAGCAAAAATCATTTTCAAAGCAAAACA-AA
440 CTAAAACAATATTTCATATTTTAAAGCTCGACCCTAGCAAAAATTATTTTCAAAGCAAAACATAA
*
24647775 AACCTTTA
505 AA-CTTCA
* * * *
24647783 AAAATATTAAGCTTTGAGTGCTCCCGCTAAGTTTGTGCATGATATATGAAAACAAGTTAGCATAC
1 AAAACATTAAGCTTTGAGTGTTCCC-CTAAGTTTGTGCATAATATAT-AAAACAAGTTAGCACAC
* *
24647848 AATTAATCATATCAAACACCAATAACAATTTCACAAATCATATCCAAATATCAAGATATTCAAGC
64 AATTAATCACATCAAGCACCAATAACAATTTCACAAATCATAT-C------CAA-ATA-TCAAG-
* ** *
24647913 CATCCCAAATATCAAGGGCATTCATATGTAATCTCACAAATTCCTTAGAAAATTCATTAATTCTC
119 --------------A--GCATTCATATGTAATCACACAAATTCCTTAGAGCATTCATGAATTCTC
* * * * *
24647978 CCAAAAATGTAT-CTAATGCAAGTAAGTTTGAAACATAACG-AAAAATTAAAATCATACAAATGG
168 CTAAAAATGTATAC-AAAGCAAGT-A---TGAAACACAACGAAAAAATTAAAATCGTGCAAATGG
* * * * *
24648041 TTTTCATGT--CAGATTGAAATTGTGCAAATGATTTTTATGTCTC-TAATTATTCAAAAATAAAT
228 TTTTTATATCACAGTTTGAAATTGTGCAAATGGTTTTTATG-CCCATAATTATTCAAAAATAAAT
* * *
24648103 TTTGATATTTTAAACGCCAAAAT-ATTTTATAACTTACACTTAACACTGTGAAAAATTAAAACCA
292 TTTGATATTTTAAGCTCCAAAATCCTTTTATAACTTACACTTAACACTGTGAAAAATTAAAACCA
* ** *
24648167 ATGCAAGTTATCATGTTTCTTTGTTTGAGCAATTTTAAAACACTGGGTTCAAGATATTCAGATTC
357 ATGCAAGTTATCATGTTTCTTTGTTTGAGCAAGTTTAAAACACT-AATTCAAGATATTCAAATTC
* * * * * * *
24648232 AATCCCATTTAAAAACTTGCTAAAACAATATTTTCATATTTTAAAGTTTGACTCTAACAAAAATC
421 ATTCCCATTTAAAAGCTTGCTAAAACAATA-TTTCATATTTTAAAGCTCGACCCTAGCAAAAATT
*
24648297 ATTTTCAATGCAAAACATAAAACTTCA
485 ATTTTCAAAGCAAAACATAAAACTTCA
* * * * *
24648324 AAAACATTAAGTTTTGAATGCTCTCCCTAAGTTTGTGCATAATATATAAAAACAAATTAGCACGC
1 AAAACATTAAGCTTTGAGTGTTC-CCCTAAGTTTGTGCATAATATAT-AAAACAAGTTAGCACAC
*
24648389 AATTAATCACATCAAACACCAATAAAAATTTCACAAATCATATCCAACTAGCAATATCATTCACG
64 AATTAATCACATCAAGCACCAAT----A----AC-AAT--T-T----C-A-CAA-ATCA-T----
* ** * *
24648454 CAATCCCAAATATTAAGAGCATTCATATGTAATTCCACAAAATT-CTTAAAGCATTCATG-AAT-
105 --AT-CCAAATATCAAGAGCATTCATATGTAATCACAC-AAATTCCTTAGAGCATTCATGAATTC
* * * * * * ** * * * * * **
24648516 TCTCTCAAAA-ATATATCTAAAACAAGTAAGTATGAAATACAATAAAAAATTAAA--ATCGTGCA
166 TC-CTAAAAATGTATA-CAAAG-CAAGTATGAAACACA-ACGA-AAAAATTAAAATCGT-G-CAA
* * * * * * * * *
24648578 A--ATTATTTTTGTTACAGTTTGAAATTGTGGAAATTGTTTTTATGCTCATAATTGTTTGAAAAA
224 ATGGTT-TTTATATCACAGTTTGAAATTGTGCAAATGGTTTTTATGCCCATAATT-ATTCAAAAA
* * *
24648641 TAAATTTTGATATTTTAAGCTCTAAAATCC-TTTATAAATTACACTTTAACACTATGAAAAATTA
287 TAAATTTTGATATTTTAAGCTCCAAAATCCTTTTATAACTTACAC-TTAACACTGTGAAAAATTA
* * * * * * * *
24648705 AAACTAATGCAAGTTACCATGTTTCTTTGTTTAAGAAAATTTAAAACATTGAGTTCAAGATATTT
351 AAACCAATGCAAGTTATCATGTTTCTTTGTTTGAGCAAGTTTAAAACACT-AATTCAAGATATTC
* * * * * *
24648770 AAATTTAGTCCCATTAAAAAACTTGGTAAAACAATATTTCATATTTTAAAGCTCGACTCTAGCAA
415 AAATTCATTCCCATTTAAAAGCTTGCTAAAACAATATTTCATATTTTAAAGCTCGACCCTAGCAA
* * *
24648835 AAATCATTTTCAAAGCAAAACAAAAAACTTTA
480 AAATTATTTTCAAAGCAAAACATAAAACTTCA
* * * * * *
24648867 AAAATATTAAGCTTTGAGTGCTCCCTCTAAGTCTGTGCATGATATATGAAAATAAGTTAGCACAT
1 AAAACATTAAGCTTTGAGTGTTCCC-CTAAGTTTGTGCATAATATAT-AAAACAAGTTAGCACAC
*
24648932 AATTAATCATATCAAGCACCAATAATAATTTCACAAATCATATCCAAATATCAAGATCATTCACG
64 AATTAATCACATCAAGCACC---AAT-A----AC-AAT--T-T-C----A-CAA-ATCA-T----
* ** *
24648997 CCATCCCAAATATCAAGAGCATTCATATGTAATCCCGTAAATTCCTTAGAGAATTCATGAATTCT
105 --AT-CCAAATATCAAGAGCATTCATATGTAATCACACAAATTCCTTAGAGCATTCATGAATTCT
*
24649062 CCTAAAAATGTATCTAATGCAAA-TAAGTATGAAACACAACG-AAAAATTAAAATCAG-GCAAAT
167 CCTAAAAATGTA--T-A--CAAAGCAAGTATGAAACACAACGAAAAAATTAAAATC-GTGCAAAT
* * * * *
24649124 GATTTTTATGT--CAGATTGAAATTGTGCAAATGATTTTTATGCCTATAATTATTCAAAAATAAA
226 GGTTTTTATATCACAGTTTGAAATTGTGCAAATGGTTTTTATGCCCATAATTATTCAAAAATAAA
* * * *
24649187 TTTTGATACTTTAAGCGT-AAAAAT-ATTTTATAACTTACACTTAACACTGTGAAAAATTAAAAT
291 TTTTGATATTTTAAGC-TCCAAAATCCTTTTATAACTTACACTTAACACTGTGAAAAATTAAAAC
* * * * * *
24649250 CAATGTAAGTTATCCTTTTTCTTTGTTTGAGCAA-TATTAAAACACTAGGTTCAAAATATTCAGA
355 CAATGCAAGTTATCATGTTTCTTTGTTTGAGCAAGT-TTAAAACACTA-ATTCAAGATATTCAAA
* * * * * *
24649314 TTCAATCCCATTTAAAAACTTTCTAAAACAATATTTCATATTTTAAAGCTTGACTCTAACAAAAA
418 TTCATTCCCATTTAAAAGCTTGCTAAAACAATATTTCATATTTTAAAGCTCGACCCTAGCAAAAA
* *
24649379 TCATTTTCAAAGTAAAACATAAAACTTCA
483 TTATTTTCAAAGCAAAACATAAAACTTCA
* * * * * * *
24649408 AAAACATTAAGTTTTGAATGCTCTCCCTAAATTTATACATAATATATAAAAACAAGTTAGCACCC
1 AAAACATTAAGCTTTGAGTGTTC-CCCTAAGTTTGTGCATAATATAT-AAAACAAGTTAGCACAC
*
24649473 AATTAATCACATC-AGACACCGATAACAATTTCACAAATCATATCCAACTAGCAATATCATTCAC
64 AATTAATCACATCAAG-CACCAATAACAATTTCACAAATCATAT----C---C-A-A--A-T---
** * *
24649537 ACAATCCCAAATATTAAGAGCATTCATATGTAATTCCACAAATTTCTTAGAGCATTCATG-AAT-
113 ---AT--C-------AAGAGCATTCATATGTAATCACACAAATTCCTTAGAGCATTCATGAATTC
* * * * * *
24649600 TCTCTCAAAA-ATATATCTAAAACAAGTATGAAACACAATG-AAAAATTAAAATCGTGCAAATGA
166 TC-CTAAAAATGTATA-CAAAG-CAAGTATGAAACACAACGAAAAAATTAAAATCGTGCAAATGG
* * ** * *
24649663 TTTTTATGTCACAGTTTGAAATTGTGAAAATAATTTTTATGCCCATAATTATTTAAAAAATAAAA
228 TTTTTATATCACAGTTTGAAATTGTGCAAATGGTTTTTATGCCCATAATTA-TTCAAAAATAAAT
* * * *
24649728 TTTGATATTTTAAGCTCTAAAATAC-TTTATAACTTACACTTAACACTATGAAAAATTAAAAACA
292 TTTGATATTTTAAGCTCCAAAATCCTTTTATAACTTACACTTAACACTGTGAAAAATTAAAACCA
* * * * *
24649792 ATGCAAGTTATTATGTTTCTTTGTTTGAGCAAATTTAAAATATTGAGTTCAAGATATTCAAATTC
357 ATGCAAGTTATCATGTTTCTTTGTTTGAGCAAGTTTAAAACACT-AATTCAAGATATTCAAATTC
* * * * * * *
24649857 AGTCCCATTAAAAAACTTGATAAAACAATATTTTATATTTTAAAGCTCGACTCTAGCAAAAATCA
421 ATTCCCATTTAAAAGCTTGCTAAAACAATATTTCATATTTTAAAGCTCGACCCTAGCAAAAATTA
* *
24649922 TTTTCAAAACAAAACATAAAACTTTA
486 TTTTCAAAGCAAAACATAAAACTTCA
* *
24649948 AAAACATTAAGCTTTGAGTGCTCCCCATAAGTTTGTGCATAATATATAAAAACAAGTCAGCACAC
1 AAAACATTAAGCTTTGAGTGTTCCCC-TAAGTTTGTGCATAATATAT-AAAACAAGTTAGCACAC
* * * *
24650013 AATTAATCATATTAAGCACCAATAACAATTTCACAAATCATATCCAAGTATCAAGATCATT-A-A
64 AATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCATTCATA
* * * * * * *
24650076 CGTAATC-C-CAAATAT-C-AAGAGCATTCATATGTAA-TCT-C-ACAAAT-TCCT-TAGAGCAT
129 TGTAATCACACAAAT-TCCTTAGAGCATTC--ATG-AATTCTCCTAAAAATGT-ATACAAAGCAA
* ** *** * * * * *
24650132 TTAT-AAATTC-TTTAAAAAATTAAAATTGTGCAAATGATTTTTATGTTACAGTTTTAAATTGTG
189 GTATGAAACACAACGAAAAAATTAAAATCGTGCAAATGGTTTTTATATCACAGTTTGAAATTGTG
* * * *
24650195 CAAATGATTTTTATGCTCATAATTGTTCAAAAATAAATTTTGATATTTTAGGCTCCAAAAT-CTT
254 CAAATGGTTTTTATGCCCATAATTATTCAAAAATAAATTTTGATATTTTAAGCTCCAAAATCCTT
* * * * *
24650259 TTATAACTTACACTTAGCACTGTGAAAAATTAAAATCAATACAAGTTATCCTATTTCTTTGTTTG
319 TTATAACTTACACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTTTGTTTG
* * * * *
24650324 AGTAAGTTTAAAACATTAAATTCAAGATATTTAAATTCATTCCCATTTAGAAAACTTGATAAAAC
384 AGCAAGTTTAAAACACT-AATTCAAGATATTCAAATTCATTCCCATTTA-AAAGCTTGCTAAAAC
* * * ** *
24650389 AATATTTCATATTTTAAAGCTTGACTCTAACAAAAATCGTTTTCAAAGCAAAATATAAAACTTCA
447 AATATTTCATATTTTAAAGCTCGACCCTAGCAAAAATTATTTTCAAAGCAAAACATAAAACTTCA
* * * *
24650454 AAAACATTAAGCTTTGAGTGCTCCCTCTAAGTTTATGCATAATATATAAAAACAAGTTAACATAC
1 AAAACATTAAGCTTTGAGTGTTCCC-CTAAGTTTGTGCATAATATAT-AAAACAAGTTAGCACAC
* *
24650519 AATTAATTACATCAAGCACTAATAACAATTTCACAAATCATATCCAAATATCAA
64 AATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAA
24650573 AATTATTCAT
Statistics
Matches: 6249, Mismatches: 1125, Indels: 1039
0.74 0.13 0.12
Matches are distributed among these distances:
462 2 0.00
463 3 0.00
464 4 0.00
465 12 0.00
466 13 0.00
467 28 0.00
468 24 0.00
469 4 0.00
470 12 0.00
472 4 0.00
473 15 0.00
474 2 0.00
475 4 0.00
476 13 0.00
477 8 0.00
478 17 0.00
479 9 0.00
480 12 0.00
481 15 0.00
482 18 0.00
483 13 0.00
484 14 0.00
485 14 0.00
486 28 0.00
487 10 0.00
488 6 0.00
489 6 0.00
490 16 0.00
491 17 0.00
492 12 0.00
493 1 0.00
494 9 0.00
495 1 0.00
496 3 0.00
497 2 0.00
498 5 0.00
499 129 0.02
500 52 0.01
501 54 0.01
502 73 0.01
503 83 0.01
504 8 0.00
505 140 0.02
506 263 0.04
507 18 0.00
508 133 0.02
509 24 0.00
510 147 0.02
511 210 0.03
512 310 0.05
513 318 0.05
514 354 0.06
515 235 0.04
516 150 0.02
517 379 0.06
518 184 0.03
519 166 0.03
520 11 0.00
521 9 0.00
522 33 0.01
523 53 0.01
524 123 0.02
525 77 0.01
526 221 0.04
527 15 0.00
528 7 0.00
529 6 0.00
530 35 0.01
531 29 0.00
532 33 0.01
533 122 0.02
534 42 0.01
535 31 0.00
536 27 0.00
537 57 0.01
538 7 0.00
539 63 0.01
540 373 0.06
541 448 0.07
542 127 0.02
543 297 0.05
544 132 0.02
545 12 0.00
546 8 0.00
547 10 0.00
548 1 0.00
549 5 0.00
550 3 0.00
552 1 0.00
553 1 0.00
557 1 0.00
558 1 0.00
559 7 0.00
560 7 0.00
561 4 0.00
567 4 0.00
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (511 bp):
AAAACATTAAGCTTTGAGTGTTCCCCTAAGTTTGTGCATAATATATAAAACAAGTTAGCACACAA
TTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCATTCATATG
TAATCACACAAATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTATACAAAGCAAGTATGAA
ACACAACGAAAAAATTAAAATCGTGCAAATGGTTTTTATATCACAGTTTGAAATTGTGCAAATGG
TTTTTATGCCCATAATTATTCAAAAATAAATTTTGATATTTTAAGCTCCAAAATCCTTTTATAAC
TTACACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTTTGTTTGAGCAAGT
TTAAAACACTAATTCAAGATATTCAAATTCATTCCCATTTAAAAGCTTGCTAAAACAATATTTCA
TATTTTAAAGCTCGACCCTAGCAAAAATTATTTTCAAAGCAAAACATAAAACTTCA
Found at i:24645401 original size:517 final size:515
Alignment explanation
Indices: 24642167--24645508 Score: 4351
Period size: 517 Copynumber: 6.5 Consensus size: 515
24642157 TTTTCAAAGC
* *
24642167 AAAACATTAAGCTTTGAGTGCTCCTCCTAAGTTTGTGCATAATATATAAAAGCAAGTTAGGACAT
1 AAAACATTAAGCTTTGAGTGCTCC-CCTAAGTTTGTGCATAATATATAAAA-CAAGTTAGCACAC
* *
24642232 AATTAATCACATCGAGCACCAATAACAATTTCAAAAATCATATCCAAATATCAAGAGCATTCATA
64 AATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCATTCATA
* *
24642297 TGTAATCCCACAAATTCCTTAGAGCATCCATGAATTCTCCTAAAAATGTATCTAAAGTAAGTAAG
129 TGTAATCCCACAAATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTATCTAAAGCAAGTAAG
* * * *
24642362 TATGAAACACAAGGAAAAAATTAATATCGTGCAAATGGTTTTTATATCAAAGTTTGAAATTGTGC
194 TATGAAACACAACGAAAAAATTAAAATCATGCAAATGGTTTTTATATCACAGTTTGAAATTGTGC
* * *
24642427 AAATGGTTTTTATGCCCATAATTATTTTAAAAATAAATTTTGATATTTTAAGCTCCAAAATCCTT
259 AAATGGTTTTTATGCCCATAATT-GTTCAAAAATAAATTTTGATATTTTAAGCTCCAAAATCTTT
* * *
24642492 TATAACTTACACTTAACACAGTGAAAAATTAAAATCAATGCAAGTTA-TCATGTTTCTTTATTTG
323 TATAACTTACACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATTC-TGTTTCTTTGTTTG
* * *
24642556 AGCAAGTTTAAAACACTAGATTCAAGATATTCAAATGCATTCCCATATAAAAAGCTTGCTAAAAC
387 AGCAAGTTTAAAACACTGGATTCAAGATATTCAAATTCATTCCCAT-TTAAAAGCTTGCTAAAAC
* * * ** * *
24642621 AATATTTCATAATTTAAAGA-TCGATCCTCGCAAAAATTGTTTTCAAAGCAAAACATAAAACATA
451 AATATTTCATATTTTAAA-ACTCGACCCTAGCAAAAATCATTTTCAAAGCAAAACATAAAACTTC
24642685 A
515 A
* * *
24642686 AAAATATTAAGCTTTGAGTGCTCCCCCTAAGTTTGTGCACAATATATAAAATAAGTTAGCACACA
1 AAAACATTAAGCTTTGAGTGCT-CCCCTAAGTTTGTGCATAATATATAAAACAAGTTAGCACACA
* * * *
24642751 ATTAATCACATTAAGCATCAATAACAATTTCACAAATCATATCTAAATTTCAAGAGCATTCATAT
65 ATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCATTCATAT
* * *
24642816 GTAATCCCACAAATTTCTTAGAGCATTTACGAATTCTCCTAAAAATGTATCTAAAGCAAGTAAGT
130 GTAATCCCACAAATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTATCTAAAGCAAGTAAGT
* * * * *
24642881 ATGAAACACAATGAAAAAAATTAAAAACATGCAAATTGCTTTTATATCATAGTTTGAAATTGTGC
195 ATGAAACACAACG-AAAAAATTAAAATCATGCAAATGGTTTTTATATCACAGTTTGAAATTGTGC
* * * * * *
24642946 AAATGGGTTTTATACCCATAATTGTTGAAAAAACAAATTTTGATAATTTAAGCTCCAAAATCCTT
259 AAATGGTTTTTATGCCCATAATTGTT-CAAAAATAAATTTTGATATTTTAAGCTCCAAAATCTTT
* * * *
24643011 TATAACTTACACTTAACAC--TCAAAAATTAAAACTAATGCAAGTTATCCTATTTCTTTGTTTGA
323 TATAACTTACACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATTCTGTTTCTTTGTTTGA
* * * * *
24643074 GCAAGTTTAATACTCT-AAGTTCAAGTTATTCGAATTCATTCCCATTTAAAAGCTTGCTAAAACA
388 GCAAGTTTAAAACACTGGA-TTCAAGATATTCAAATTCATTCCCATTTAAAAGCTTGCTAAAACA
* * * * * * * * *
24643138 ATATTTCATATTTCAAAGCCCAACCATAGCAAAAATCGTTTTTAAAGTAAAACAAAAAAACTTCA
452 ATATTTCATATTTTAAAACTCGACCCTAGCAAAAATCATTTTCAAAGCAAAAC-ATAAAACTTCA
* * * *
24643203 TAAATATTAAGCTTTGAGTGCTTCTCCTAAGTTTGTGCATAATTTATAAAACAAGTT---A-ACA
1 AAAACATTAAGCTTTGAGTGC-TCCCCTAAGTTTGTGCATAATATATAAAACAAGTTAGCACACA
* * * *
24643264 ATTAATCGCATCAAGCACCAATAACAATTTAACAAATCATA-CTTAAATATCATGAGCATTCATA
65 ATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATC-CAAATATCAAGAGCATTCATA
* * * ** * *
24643328 TGTAATACCATAAATTTCTTAGAGTGTTTATGAATTCTCCTAAAAATGTA-CTAAAGCAAGTAAA
129 TGTAATCCCACAAATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTATCTAAAGCAAGTAAG
* * *
24643392 TATGAAACAAAATGAAAAACTTAAAAT--TGCACAAATGGTTTTTATATCACAGTTTGAAATTGT
194 TATGAAACACAACGAAAAAATTAAAATCATG--CAAATGGTTTTTATATCACAGTTTGAAATTGT
* * *
24643455 GCAAATGATTTTTATGCCCATAATTG-TCTGAAAATAAATTTTGATATTTTAAGCTCCAAAATCG
257 GCAAATGGTTTTTATGCCCATAATTGTTC-AAAAATAAATTTTGATATTTTAAGCTCCAAAATCT
* * * * * *
24643519 TTTATAACTTACACATAACACTGTGAAAAATTTAAACCAATGCAAGCTATCCAGTTTCTTTGCTT
321 TTTATAACTTACACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATTCTGTTTCTTTGTTT
* * *
24643584 GAGCAATTTTAAAACACTGGATTCAAGATATTCAAATTCATTCCCATTTAAAAGCTTGGTAAAAG
386 GAGCAAGTTTAAAACACTGGATTCAAGATATTCAAATTCATTCCCATTTAAAAGCTTGCTAAAAC
* * * * * * *
24643649 AATATTTTATATTTTCAAGCTCGACCCTCGTAAAAATTATTTTCAAAGTAAAACATAAAACTTCA
451 AATATTTCATATTTTAAAACTCGACCCTAGCAAAAATCATTTTCAAAGCAAAACATAAAACTTCA
* *
24643714 AAAACATTAAGCTTTGGGTGCTCCCCCTAAGTTTGTACATAATATATAAAACAAGTTAGCACACA
1 AAAACATTAAGCTTTGAGTGCT-CCCCTAAGTTTGTGCATAATATATAAAACAAGTTAGCACACA
* * *
24643779 ATTAATCACAACAAGCACCAATAACAATTTCACAACTCATATGCAAATATCAAGAGCATTCATAT
65 ATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCATTCATAT
24643844 GTAATCCCAGGAATTCATGAATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTATCTAAAGC
130 GTAATCCC----A--CA--AATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTATCTAAAGC
* * *
24643909 AAGTAAGTATGAAACACAACTAAAAAATTAAAATCGTGCAAATGGTTTTTATATCACAATTTGAA
187 AAGTAAGTATGAAACACAACGAAAAAATTAAAATCATGCAAATGGTTTTTATATCACAGTTTGAA
* * * * * *
24643974 ATTGTGCAAACGGTGTTTATGCCCATTATTATTCAAAAATAAATTTTGATATTTTAAG-TGTCGA
252 ATTGTGCAAATGGTTTTTATGCCCATAATTGTTCAAAAATAAATTTTGATATTTTAAGCT-CCAA
* *
24644038 AATCATTTTATAACTTACATTTAACACTGTGAAAAATTAAAACCAATGTAAGTTA-TCTTGTTTT
316 AATC-TTTTATAACTTACACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATTC-TG-TTT
* * * * *
24644102 GTTTGTTTGAGCAAGTTTAAAACACTAGATTCAAGATAGTCAAATTCTTTCCTATTTAAAAGCTT
378 CTTTGTTTGAGCAAGTTTAAAACACTGGATTCAAGATATTCAAATTCATTCCCATTTAAAAGCTT
* * * * *
24644167 GCTAAAATAATATTTCATATTTTAAAGC-CTGACCCAAGCAAAAATCGTTTTCAAACCAAAACAT
443 GCTAAAACAATATTTCATATTTTAAAACTC-GACCCTAGCAAAAATCATTTTCAAAGCAAAACAT
*
24644231 AAAACCTCA
507 AAAACTTCA
* *
24644240 AAAACATTAAGCTTTGAGTGTTCCCCTAAGTTTGTGGATAATATATAAAAACAAGTTAGCACACA
1 AAAACATTAAGCTTTGAGTGCTCCCCTAAGTTTGTGCATAATATAT-AAAACAAGTTAGCACACA
** * *
24644305 ATTAATCACATCAATTACCAATAACAATTTCAAAAATCATATCCAAATATCAAAAGCATTTC-TA
65 ATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCA-TTCATA
* * * ** *
24644369 TGTAATCACATAAATTCCTTAAAGCGCTCGTGAATTCTCCTAAAAATGTATAC-AAAGC----AA
129 TGTAATCCCACAAATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTAT-CTAAAGCAAGTAA
* * *
24644429 GTATGAAACAAAACGAAAAAATTAAAATCGTGCAAATGGTTTTCATATCACAGTTTGAAATTGTG
193 GTATGAAACACAACGAAAAAATTAAAATCATGCAAATGGTTTTTATATCACAGTTTGAAATTGTG
* * * *
24644494 CAAATGGTTTTTACGCCCATAATTATTCAAAAACAAATTCTGATATTTTAAGCTCCAAAATCCTT
258 CAAATGGTTTTTATGCCCATAATTGTTCAAAAATAAATTTTGATATTTTAAGCTCCAAAAT-CTT
* * **
24644559 TTATAACTTACACTTAACACTGTAAAAAATTAAAACTAATGCAAGTTATAATGTTTCTTTGTTTG
322 TTATAACTTACACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATTCTGTTTCTTTGTTTG
** * * * *
24644624 AGCATTTTTAAAACACTGAATTCAAGGTATTCAAATTCATTCACATTTAAAAGCTTGCTAAAAGA
387 AGCAAGTTTAAAACACTGGATTCAAGATATTCAAATTCATTCCCATTTAAAAGCTTGCTAAAACA
* * * *
24644689 ATATTTCATATTTTAAAGCTCGACTCTAGCAAAATTTATTTTTCAAAGCAAAACATAAAACTTCA
452 ATATTTCATATTTTAAAACTCGACCCTAGCAAAAATCA-TTTTCAAAGCAAAACATAAAACTTCA
* * * *
24644754 AAAACATTAAGCTTTGACTACTCCCCCTAAGTTTGCGGATAATATAT--AACAAGTTAGCACACA
1 AAAACATTAAGCTTTGAGTGCT-CCCCTAAGTTTGTGCATAATATATAAAACAAGTTAGCACACA
* * * *
24644817 ATTAATCACATCAAGCATCAATGACAATTTCACAAATCATATCCAAATATCATGAGCATTAATAT
65 ATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCATTCATAT
* * * *
24644882 GTAATCCCACAAATTCTTTAGAGCATTTATGAATTCTCATAAAAATGTATCTAAAGAAAGTAAGT
130 GTAATCCCACAAATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTATCTAAAGCAAGTAAGT
* ** * * *
24644947 ATGAAACACAACGAAAAAATTAAAAATCAAGCAAATTCTTTTTATTTAATAGTTTGAAATTGTGC
195 ATGAAACACAACGAAAAAATT-AAAATCATGCAAATGGTTTTTATATCACAGTTTGAAATTGTGC
* * * * *
24645012 AGATGATTTTTATGCCCAGAATTGTTCAAAAATAAATTTTAATATTTTAAGCTCAAAAATCTTTT
259 AAATGGTTTTTATGCCCATAATTGTTCAAAAATAAATTTTGATATTTTAAGCTCCAAAATCTTTT
* *
24645077 ATAACTTACACTTAACATTGTGAAAAATTAAAACCAATGCAAGTTATTCTGTTT-TTTGTCTGAG
324 ATAACTTACACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATTCTGTTTCTTTGTTTGAG
* *
24645141 CAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTCCCATTTAAAAACTTGCTAAAACAAT
389 CAAGTTTAAAACACTGGATTCAAGATATTCAAATTCATTCCCATTTAAAAGCTTGCTAAAACAAT
* * * *
24645206 ATTTCATATTTTAAAATTCAACCCTAGCAAAAATCATTTTGAAAGCAAAATATAAAACTTCA
454 ATTTCATATTTTAAAACTCGACCCTAGCAAAAATCATTTTCAAAGCAAAACATAAAACTTCA
24645268 AAAACATTAAGCTTTGAGTGCTCCCCATAAGTTTGTGCATAATATATAAAAACAAGTTAGCACAC
1 AAAACATTAAGCTTTGAGTGCTCCCC-TAAGTTTGTGCATAATATAT-AAAACAAGTTAGCACAC
* *
24645333 AATTAATCATATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATTAAGAGCATTCATA
64 AATTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCATTCATA
* * * *
24645398 TGTAATCACACAAATTCCTTATAGCATTCATGAATTCCCCTAAAAATTTATCTAAAGCAAGTAAG
129 TGTAATCCCACAAATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTATCTAAAGCAAGTAAG
24645463 TATGAAACACAACGAAAAAAATTAAAATCATGCAAATGGTTTTTAT
194 TATGAAACACAACG-AAAAAATTAAAATCATGCAAATGGTTTTTAT
24645509 TCCCATAATT
Statistics
Matches: 2453, Mismatches: 311, Indels: 120
0.85 0.11 0.04
Matches are distributed among these distances:
509 2 0.00
510 53 0.02
511 125 0.05
512 275 0.11
513 206 0.08
514 270 0.11
515 188 0.08
516 138 0.06
517 382 0.16
518 194 0.08
519 168 0.07
520 3 0.00
521 1 0.00
522 1 0.00
523 35 0.01
524 118 0.05
525 70 0.03
526 221 0.09
527 3 0.00
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.32
Consensus pattern (515 bp):
AAAACATTAAGCTTTGAGTGCTCCCCTAAGTTTGTGCATAATATATAAAACAAGTTAGCACACAA
TTAATCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCATTCATATG
TAATCCCACAAATTCCTTAGAGCATTCATGAATTCTCCTAAAAATGTATCTAAAGCAAGTAAGTA
TGAAACACAACGAAAAAATTAAAATCATGCAAATGGTTTTTATATCACAGTTTGAAATTGTGCAA
ATGGTTTTTATGCCCATAATTGTTCAAAAATAAATTTTGATATTTTAAGCTCCAAAATCTTTTAT
AACTTACACTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATTCTGTTTCTTTGTTTGAGCA
AGTTTAAAACACTGGATTCAAGATATTCAAATTCATTCCCATTTAAAAGCTTGCTAAAACAATAT
TTCATATTTTAAAACTCGACCCTAGCAAAAATCATTTTCAAAGCAAAACATAAAACTTCA
Found at i:24650594 original size:27 final size:28
Alignment explanation
Indices: 24650562--24650649 Score: 115
Period size: 29 Copynumber: 3.1 Consensus size: 28
24650552 CAAATCATAT
**
24650562 CCAAATATCAAAATTATTC-ATGTAATC
1 CCAAATATCAAAAGCATTCAATGTAATC
*
24650589 CCAAATATCAAGAGCATTCATATGTAATC
1 CCAAATATCAAAAGCATTCA-ATGTAATC
*
24650618 CCAAATATCAAGAGCATTCATATGTAATC
1 CCAAATATCAAAAGCATTCA-ATGTAATC
24650647 CCA
1 CCA
24650650 TAAATTCCTT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 16 0.29
29 40 0.71
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (28 bp):
CCAAATATCAAAAGCATTCAATGTAATC
Found at i:24650617 original size:506 final size:506
Alignment explanation
Indices: 24645945--24648527 Score: 1328
Period size: 515 Copynumber: 5.0 Consensus size: 506
24645935 AAACACAATG
** ** * * * ** **
24645945 AAAAAATTAAAATCGTGCAAATGGCTTCCATATCACGGTTTGAAATTATGCGAATCGTTTTTATG
1 AAAAAATTAAAATCGTGCAAATGATTTTTATGTCACAGTTTGAAATTGTGAAAATAATTTTTATG
* * * * * *
24646010 -CCATAATT-GTTCAAAAACAAATTTTGATATTTTAAGCTTCAAAATCCTTTACAACTTACACTT
66 CCCATAATTAGTTAAAAAATAAAATTTGATATTTTAAGCTCCAAAATACTTTATAACTTACACTT
* * * * * * * *
24646073 AATACT-TAAAAAAATTAAAACCAATGCAAGTTATCCTGTTTTTTTGTTTGAGCAAGTTTAAAAC
131 AACACTAT-GAAAAATTAAAAACAATACAAGTTATCATATTTCTTTGTTTGAGCAAATTTAAAAC
* * * * * * * * * * *
24646137 ACTATATTCAAGATATTAAAATTCATTCCTATTTAAATACTAGCTAAAATAATACTTCATATTTT
195 ATTAAATTCAAGATATTCAAATTCAGTCCCATTAAAAAACTTGATAAAACAATATTTCATATTTT
* * * * *
24646202 AAAACTCGACCCTAGCTAAAATCATTTTCAAAGA-AAAACATAAAACTTAAAAAACATTAAGCTT
260 AAAGCTCGACTCTAACAAAAATCATTTTCAAA-ACAAAACATAAAACTTCAAAAACATTAAGCTT
* * * * * * * * * *
24646266 TAAGTGATCCTC-TAAGTTTGTGTATAAAATATAAAAAATAAGTTAGCACACAATTAATTACATC
324 TGAGTGCTCCCCATAAGTTTATGCATAATATAT-AAAAACAAGTCAACACACAATTAATCACATC
* * * *
24646330 AAACACCAATAACAATTTCACAAATCATATCCAAATATCAAGAGCATTCATATGTAATAATCCCA
388 AAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAAATCATT-A-ACG---TAATCCCA
* * * * * *
24646395 CGAAT-TCCTTAGAGCGTTC--ATG-AATGCTTCTAAAAATGT-ATGTAAAGCAAGTAAGTATGA
448 --AATAT-C-AAGAGCATTCATATGTAAT-C-TC-ACAAAT-TCCT-TAGAGC-A-T--TTAT-A
** ***
24646455 AACACAAAG
499 AATTC-TTT
* * * * ** *
24646464 AAAAAATTAAAATCGTGCAACTTG-TTTTTATATCACAGTTTGATATTGTGCAAATGGTTTTTCT
1 AAAAAATTAAAATCGTGCAA-ATGATTTTTATGTCACAGTTTGAAATTGTGAAAATAATTTTTAT
* * * * * ** * ** *
24646528 ACCTATAAGT-GTTCAAAAACAATTTTTAATAGCTTAAGCTCCAAAATCCTTTA-AACTTACACT
65 GCCCATAATTAGTTAAAAAATAAAATTTGATATTTTAAGCTCCAAAATACTTTATAACTTACACT
* * * * *
24646591 TAACACTGTGAAAAATT-GAAACAAATACAAGTTATCTTGTTTCTTTGTTT----AAGTTTAAAA
130 TAACACTATGAAAAATTAAAAAC-AATACAAGTTATCATATTTCTTTGTTTGAGCAAATTTAAAA
** * * ** * * *
24646651 CATTTGATTCAAGATATTTAAATTCATTCCCATTTTAAAACTTGCTAAAGCAATATTACATATTT
194 CATTAAATTCAAGATATTCAAATTCAGTCCCATTAAAAAACTTGATAAAACAATATTTCATATTT
* * * * *
24646716 TAAAGCTCAACTCTAGCAAAAATCATTTTCAGAGCGAAACATAAAACTTCAAAAACATTAAGCTT
259 TAAAGCTCGACTCTAACAAAAATCATTTTCAAAACAAAACATAAAACTTCAAAAACATTAAGCTT
* * * * * * * * *
24646781 TGAGTACTCCCCTTAAGTTTGTGCATGATATATAAAAACAAGTTAGCACAAAACTAATCACATCG
324 TGAGTGCTCCCCATAAGTTTATGCATAATATATAAAAACAAGTCAACACACAATTAATCACATCA
* * * *
24646846 AGCACCAATAACAATTTCATAAATCATATCCAAATATCAAGAGCATTCATATGTAATCTCACAAA
389 AGCACCAATAACAATTTCACAAATCATATCCAAATATCAAAATCATT-A-ACGTAATC-C-CAAA
* * ** * * * *
24646911 T-TCCTTAA-AGCATTCATGAAT-T-CTCTCAAAAATATATTTAAAGCAAGTAAGTATAAA-ACA
450 TAT-C--AAGAGCATTCAT--ATGTAATCTCACAAAT-TCCTTAGAGC-A-T--TTATAAATTCT
**
24646971 CA
505 TT
* * * * *
24646973 ACGAAAAATTAAAAT-ATGCAAATGATTTTTATATCACATTTTGAAATTGTGCAAATGATTTTTA
1 A--AAAAATTAAAATCGTGCAAATGATTTTTATGTCACAGTTTGAAATTGTGAAAATAATTTTTA
*
24647037 TGCCCATAATT-GTTCAAAAATAAAATTTGATATTTTAAGCTCCAAAAT-CTTTTATAACTTAGC
64 TGCCCATAATTAGTTAAAAAATAAAATTTGATATTTTAAGCTCCAAAATAC-TTTATAACTTA-C
* * * * * * * *
24647100 -TTTAACACTGTGAGAAATTAAAACCAATGCAAGTTATCATGTTTCTTTATTTGAGCAACTTTAA
127 ACTTAACACTATGAAAAATTAAAAACAATACAAGTTATCATATTTCTTTGTTTGAGCAAATTTAA
* * * * ** * * * *
24647164 AATATTAGATTCAAGATAGTCAAATTCATTCTAATTTAAGAACTTGCTAAAATAAT-TTTCATAT
192 AACATTAAATTCAAGATATTCAAATTCAGTCCCATTAAAAAACTTGATAAAACAATATTTCATAT
* * * * * * * *
24647228 TTGAAAGCTCGATTTTAGCAAAAATTATTTTCAAAGCAAAACATAAAACTTC-AAAACTATTCAT
257 TTTAAAGCTCGACTCTAACAAAAATCATTTTCAAAACAAAACATAAAACTTCAAAAAC-ATTAAG
* * * * * * **
24647292 CTTTGAGTGCTCCCC-TAAGTTTATACATGATATATAAAAACAAGTTAGCACATAACTAATCGTA
321 CTTTGAGTGCTCCCCATAAGTTTATGCATAATATATAAAAACAAGTCAACACACAATTAATCACA
* * * * * * *
24647356 TCGAGCACCAATAACAGTTTCATAAATCATATCCAAATATCAAGATCATTCACGCAATCCTAAAT
386 TCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAAATCATTAACGTAATCCCAAAT
* * * * *
24647421 ATCAAGAGCATTCATATGTAGTCCCACAAATTCCTTAGAGCATTCATGAATTCTCGTA
451 ATCAAGAGCATTCATATGTAATCTCACAAATTCCTTAGAGCATTTATAAATTCT--TT
** * ***** * ** * ** * *
24647479 AAAATATATCTAAAA-CAAGTAAGTATGAAACACAATG--AAAAATTAAAATCATGCAAATGATT
1 AAAA-A-AT-TAAAATCGTGCAA--ATG-ATTTTTATGTCACAGTTTGAAATTGTGAAAATAATT
* * * * *
24647541 TTTATGCCCATAATTA-TTGAAAAACAAATTTTTATATTTTAAGCTCCAAAATTCTTTATAACTT
60 TTTATGCCCATAATTAGTTAAAAAATAAAATTTGATATTTTAAGCTCCAAAATACTTTATAACTT
* * * * * *
24647605 ACACTTAACACTCTGAGAAATT-AAAAC-CT-C-A--T-TC-TGTTTCTTTGTTTGAGTAAGTTT
125 ACACTTAACACTATGAAAAATTAAAAACAATACAAGTTATCATATTTCTTTGTTTGAGCAAATTT
* ** * * * * *
24647662 AAAAACACTGGATTCAAGATATTCAAATT-TGTTCCCTTTTAAAAACTTGCTAAAATAATATTTC
190 -AAAACATTAAATTCAAGATATTCAAATTCAG-TCCCATTAAAAAACTTGATAAAACAATATTTC
* * * * *
24647726 ATATTTTAAAACTCGACTCTAGCAAAAATCATTTTCAAAGCAAAACA-AAAACCTTTAAAAATAT
253 ATATTTTAAAGCTCGACTCTAACAAAAATCATTTTCAAAACAAAACATAAAA-CTTCAAAAACAT
* * * * * *
24647790 TAAGCTTTGAGTGCTCCCGC-TAAGTTTGTGCATGATATATGAAAACAAGTTAGCATACAATTAA
317 TAAGCTTTGAGTGCTCCC-CATAAGTTTATGCATAATATATAAAAACAAGTCAACACACAATTAA
* * * **
24647854 TCATATCAAACACCAATAACAATTTCACAAATCATATCCAAATATCAAGAT-ATTCAA-GCCATC
381 TCACATCAAGCACCAATAACAATTTCACAAATCATATCCAAATATCAAAATCATT-AACGTAATC
* ** * * **
24647917 CCAAATATCAAGGGCATTCATATGTAATCTCACAAATTCCTTAGAAAATTCATTAATTCTCCC
445 CCAAATATCAAGAGCATTCATATGTAATCTCACAAATTCCTTAGAGCATTTATAAATTCT-TT
* * *** * *
24647980 AAAAATGTATCTAATGCAAGTAAGTTTGAAACATAACGAAAAATTAAAATCATACAAATGGTTTT
1 AAAAA---AT-TAA---AA-T-CG--TG---CA-AATG----ATTTTTAT-GT-CACA--G----
* * * * *
24648045 CATGTCAGATTGAAATTGTGCAAATGATTTTTATGTCTC-TAATTA-TTCAAAAATAAATTTTGA
39 ----T----TTGAAATTGTGAAAATAATTTTTATG-CCCATAATTAGTTAAAAAATAAAATTTGA
* * * * * *
24648108 TATTTTAAACGCCAAAATATTTTATAACTTACACTTAACACTGTGAAAAATTAAAACCAATGCAA
95 TATTTTAAGCTCCAAAATACTTTATAACTTACACTTAACACTATGAAAAATTAAAAACAATACAA
* * * *** * *
24648173 GTTATCATGTTTCTTTGTTTGAGCAATTTTAAAACACTGGGTTCAAGATATTCAGATTCAATCCC
160 GTTATCATATTTCTTTGTTTGAGCAAATTTAAAACATTAAATTCAAGATATTCAAATTCAGTCCC
* * * *
24648238 ATTTAAAAACTTGCTAAAACAATATTTTCATATTTTAAAGTTTGACTCTAACAAAAATCATTTTC
225 ATTAAAAAACTTGATAAAACAATA-TTTCATATTTTAAAGCTCGACTCTAACAAAAATCATTTTC
** * * *
24648303 AATGCAAAACATAAAACTTCAAAAACATTAAGTTTTGAATGCTCTCCC-TAAGTTTGTGCATAAT
289 AAAACAAAACATAAAACTTCAAAAACATTAAGCTTTGAGTGCTC-CCCATAAGTTTATGCATAAT
* * * * * *
24648367 ATATAAAAACAAATTAGCACGCAATTAATCACATCAAACACCAATAAAAATTTCACAAATCATAT
353 ATATAAAAACAAGTCAACACACAATTAATCACATCAAGCACCAATAACAATTTCACAAATCATAT
* * * * * *
24648432 CCAACTAGCAATATCATTCACGCAATCCCAAATATTAAGAGCATTCATATGTAAT-TCCACAAAA
418 CCAAATATCAAAATCATTAACGTAATCCCAAATATCAAGAGCATTCATATGTAATCT-CAC-AAA
* * * *
24648496 TT-CTTAAAGCATTCATGAATTCTCT
481 TTCCTTAGAGCATTTATAAATTCTTT
*
24648521 CAAAAAT
1 AAAAAAT
24648528 ATATCTAAAA
Statistics
Matches: 1698, Mismatches: 263, Indels: 187
0.79 0.12 0.09
Matches are distributed among these distances:
500 21 0.01
501 57 0.03
502 136 0.08
503 94 0.06
504 5 0.00
505 5 0.00
506 8 0.00
507 24 0.01
508 111 0.07
509 14 0.01
510 91 0.05
511 68 0.04
512 46 0.03
513 104 0.06
514 74 0.04
515 265 0.16
516 19 0.01
518 3 0.00
519 101 0.06
520 47 0.03
533 90 0.05
534 6 0.00
535 1 0.00
536 1 0.00
537 1 0.00
538 2 0.00
539 1 0.00
540 54 0.03
541 184 0.11
542 60 0.04
543 5 0.00
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (506 bp):
AAAAAATTAAAATCGTGCAAATGATTTTTATGTCACAGTTTGAAATTGTGAAAATAATTTTTATG
CCCATAATTAGTTAAAAAATAAAATTTGATATTTTAAGCTCCAAAATACTTTATAACTTACACTT
AACACTATGAAAAATTAAAAACAATACAAGTTATCATATTTCTTTGTTTGAGCAAATTTAAAACA
TTAAATTCAAGATATTCAAATTCAGTCCCATTAAAAAACTTGATAAAACAATATTTCATATTTTA
AAGCTCGACTCTAACAAAAATCATTTTCAAAACAAAACATAAAACTTCAAAAACATTAAGCTTTG
AGTGCTCCCCATAAGTTTATGCATAATATATAAAAACAAGTCAACACACAATTAATCACATCAAG
CACCAATAACAATTTCACAAATCATATCCAAATATCAAAATCATTAACGTAATCCCAAATATCAA
GAGCATTCATATGTAATCTCACAAATTCCTTAGAGCATTTATAAATTCTTT
Found at i:24650623 original size:29 final size:29
Alignment explanation
Indices: 24650581--24650649 Score: 138
Period size: 29 Copynumber: 2.4 Consensus size: 29
24650571 AAAATTATTC
24650581 ATGTAATCCCAAATATCAAGAGCATTCAT
1 ATGTAATCCCAAATATCAAGAGCATTCAT
24650610 ATGTAATCCCAAATATCAAGAGCATTCAT
1 ATGTAATCCCAAATATCAAGAGCATTCAT
24650639 ATGTAATCCCA
1 ATGTAATCCCA
24650650 TAAATTCCTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.28
Consensus pattern (29 bp):
ATGTAATCCCAAATATCAAGAGCATTCAT
Found at i:24651557 original size:3 final size:3
Alignment explanation
Indices: 24651549--24651578 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
24651539 ATTAACAACC
*
24651549 ATA ATA ATA ATA ATA ATA ATA ATG ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
24651579 TTTAAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:24652885 original size:10 final size:10
Alignment explanation
Indices: 24652870--24652901 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
24652860 TTATTGACAG
24652870 TGCTAGGATA
1 TGCTAGGATA
24652880 TGCTAGGATA
1 TGCTAGGATA
24652890 TGCTAGGATA
1 TGCTAGGATA
24652900 TG
1 TG
24652902 TGCAAGGGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.28, C:0.09, G:0.31, T:0.31
Consensus pattern (10 bp):
TGCTAGGATA
Found at i:24658511 original size:69 final size:69
Alignment explanation
Indices: 24658400--24658539 Score: 194
Period size: 69 Copynumber: 2.0 Consensus size: 69
24658390 AAAGTCAAGA
* * * *
24658400 AAGGAAATTACCATGATATAACAGAAATCATTAGAAACTTGAAGGTGTGGTCTCAGAATGATCAG
1 AAGGAAATTACCATGATATAAAAGAAAGCATTAGAAACTTGAAGGTGTAGTCTCAGAATAATCAG
*
24658465 TTTT
66 CTTT
*
24658469 AAGGAAATTACCATGATA-AATTAAG-AAGCATTAGAAACTTGAAGGTGTAGTCTCAGACTAATC
1 AAGGAAATTACCATGATATAA--AAGAAAGCATTAGAAACTTGAAGGTGTAGTCTCAGAATAATC
24658532 AGCTTT
64 AGCTTT
24658538 AA
1 AA
24658540 ATATGTTACT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
68 2 0.03
69 59 0.94
70 2 0.03
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.28
Consensus pattern (69 bp):
AAGGAAATTACCATGATATAAAAGAAAGCATTAGAAACTTGAAGGTGTAGTCTCAGAATAATCAG
CTTT
Found at i:24664094 original size:29 final size:29
Alignment explanation
Indices: 24664041--24664118 Score: 88
Period size: 30 Copynumber: 2.6 Consensus size: 29
24664031 ATGAAATACC
24664041 TAATTAAATAAAAATTAAAATTTTAA-AATT
1 TAATTAAATAAAAA-T-AAATTTTAAGAATT
*
24664071 TAATTAAATAAAAATAAATCTTTAAGGATT
1 TAATTAAATAAAAATAAAT-TTTAAGAATT
*
24664101 TAATT-GATACAAAATAAA
1 TAATTAAATA-AAAATAAA
24664119 ATATTTAGTG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
28 4 0.09
29 9 0.21
30 30 0.70
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.36
Consensus pattern (29 bp):
TAATTAAATAAAAATAAATTTTAAGAATT
Found at i:24668123 original size:3 final size:3
Alignment explanation
Indices: 24668075--24668106 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
24668065 AGTTAAAAAA
*
24668075 AAT AAT AAT AAT AAT AAT AAT AAT TAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
24668107 CGCAGCTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:24678027 original size:2 final size:2
Alignment explanation
Indices: 24678016--24678052 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
24678006 CAAGGAATCA
24678016 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24678053 CGATGTGAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:24683299 original size:36 final size:30
Alignment explanation
Indices: 24683211--24683297 Score: 122
Period size: 30 Copynumber: 2.9 Consensus size: 30
24683201 TTTTTTATAA
24683211 TAAAAGGTTTAATTAAATAAAAATAAATATT
1 TAAAA-GTTTAATTAAATAAAAATAAATATT
24683242 TAAAAGTTTAATTAAATAAAAATAAATATT
1 TAAAAGTTTAATTAAATAAAAATAAATATT
* * *
24683272 TAAGAA-TTTAACTAATTCAAAATAAA
1 TAA-AAGTTTAATTAAATAAAAATAAA
24683298 AAATTTAGTG
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
30 45 0.87
31 7 0.13
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (30 bp):
TAAAAGTTTAATTAAATAAAAATAAATATT
Found at i:24686082 original size:7 final size:7
Alignment explanation
Indices: 24686044--24686085 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
24686034 AATTTTTTAA
24686044 AAATTTT
1 AAATTTT
24686051 AAAATTTT
1 -AAATTTT
*
24686059 AAAATTT
1 AAATTTT
24686066 AAA-TTT
1 AAATTTT
24686072 -AATTTT
1 AAATTTT
24686078 AAATTTT
1 AAATTTT
24686085 A
1 A
24686086 TATATTTATA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
5 2 0.06
6 6 0.19
7 16 0.52
8 7 0.23
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (7 bp):
AAATTTT
Found at i:24686107 original size:3 final size:3
Alignment explanation
Indices: 24686099--24686148 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
24686089 ATTTATATAC
*
24686099 TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
24686147 TT
1 TT
24686149 GCCATTACTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:24687926 original size:3 final size:3
Alignment explanation
Indices: 24687918--24687978 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
24687908 GCTTTAAAAA
24687918 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
24687966 TAT TAT TAT TAT T
1 TAT TAT TAT TAT T
24687979 GTTGTTTCTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:24688567 original size:32 final size:32
Alignment explanation
Indices: 24688526--24688589 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
24688516 GGTGACTTCC
*
24688526 GTAGGCAAACCAAACCGAGATAGCCAACATAT
1 GTAGGCAAACCAAACCGAAATAGCCAACATAT
*
24688558 GTAGGCAAACCAAATCGAAATAGCCAACATAT
1 GTAGGCAAACCAAACCGAAATAGCCAACATAT
24688590 ACAGTAAACC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.45, C:0.23, G:0.17, T:0.14
Consensus pattern (32 bp):
GTAGGCAAACCAAACCGAAATAGCCAACATAT
Found at i:24691129 original size:270 final size:270
Alignment explanation
Indices: 24690648--24691143 Score: 922
Period size: 270 Copynumber: 1.8 Consensus size: 270
24690638 TGTCCACAAT
*
24690648 CATGGATGTGGTTTTTTAGAACTTTTTCTTACTAGATTCAATTCTTTAGGCTTCTTATAGTGCAG
1 CATGGATGTGGTCTTTTAGAACTTTTTCTTACTAGATTCAATTCTTTAGGCTTCTTATAGTGCAG
24690713 GTTGTCTTAGCTGCTTTTTTATGTACCTTGAGTGGCTATCGCCTTTCTTTATTCATAAATGCTAC
66 GTTGTCTTAGCTGCTTTTTTATGTACCTTGAGTGGCTATCGCCTTTCTTTATTCATAAATGCTAC
* *
24690778 CTTTCTTTCAATAGAAGCTTATACTAAAAATATGAAAATTTTGAATAAACACTAAGCAATATTAG
131 CTTTCTTTCAATAGAAGCTCATACTAAAAATATAAAAATTTTGAATAAACACTAAGCAATATTAG
24690843 TGCTCCCATCCTTTTTTCATATATACTTGAGTGTCCACATAGCTTCAATTCAGTGTCCACATAGC
196 TGCTCCCATCCTTTTTTCATATATACTTGAGTGTCCACATAGCTTCAATTCAGTGTCCACATAGC
24690908 TTTTTTAGCA
261 TTTTTTAGCA
*
24690918 CATGGATGTGGTCTTTTAGAACTTTTTCTTACTAGATTCAATTCTTTAGGCTTCTTATGGTGCAG
1 CATGGATGTGGTCTTTTAGAACTTTTTCTTACTAGATTCAATTCTTTAGGCTTCTTATAGTGCAG
* *
24690983 GTTGTCTTAGCTGCTCTTTTT-TGTACCTTGAGTGGTTATCGCCTTTCTTTATTCATAAATGCTG
66 GTTGTCTTAGCTGCT-TTTTTATGTACCTTGAGTGGCTATCGCCTTTCTTTATTCATAAATGCTA
24691047 CCTTTCTTTCAATAGAAGCTCATACTAAAAATATAAAAATTTTGAATAAACACTAAGCAATATTA
130 CCTTTCTTTCAATAGAAGCTCATACTAAAAATATAAAAATTTTGAATAAACACTAAGCAATATTA
24691112 GTGCTCCCATCCTTTTTTCATATATACTTGAG
195 GTGCTCCCATCCTTTTTTCATATATACTTGAG
24691144 GTTGTTAGTA
Statistics
Matches: 219, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
270 214 0.98
271 5 0.02
ACGTcount: A:0.26, C:0.18, G:0.14, T:0.42
Consensus pattern (270 bp):
CATGGATGTGGTCTTTTAGAACTTTTTCTTACTAGATTCAATTCTTTAGGCTTCTTATAGTGCAG
GTTGTCTTAGCTGCTTTTTTATGTACCTTGAGTGGCTATCGCCTTTCTTTATTCATAAATGCTAC
CTTTCTTTCAATAGAAGCTCATACTAAAAATATAAAAATTTTGAATAAACACTAAGCAATATTAG
TGCTCCCATCCTTTTTTCATATATACTTGAGTGTCCACATAGCTTCAATTCAGTGTCCACATAGC
TTTTTTAGCA
Found at i:24691267 original size:25 final size:25
Alignment explanation
Indices: 24691221--24691270 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
24691211 TAGATCAAAT
*
24691221 ATAATTTAATTTGATATTTTAATTA
1 ATAATTTAATTTGATATCTTAATTA
*
24691246 ATAATTTTATTATGATA-CTTAATTA
1 ATAATTTAATT-TGATATCTTAATTA
24691271 CAATTCTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (25 bp):
ATAATTTAATTTGATATCTTAATTA
Found at i:24691748 original size:22 final size:22
Alignment explanation
Indices: 24691688--24691748 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 22
24691678 TTAATAACAA
24691688 AACTATTTAATATATAATAATTAT
1 AACTA-TTAATA-ATAATAATTAT
*
24691712 AA-TATTAAT--TTATAATTAT
1 AACTATTAATAATAATAATTAT
*
24691731 AACTATTAATAATGATAA
1 AACTATTAATAATAATAA
24691749 ACATTCCCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
19 11 0.34
20 7 0.22
22 10 0.31
23 2 0.06
24 2 0.06
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (22 bp):
AACTATTAATAATAATAATTAT
Found at i:24692068 original size:39 final size:35
Alignment explanation
Indices: 24691991--24692079 Score: 99
Period size: 39 Copynumber: 2.4 Consensus size: 35
24691981 TGTTACTAGT
*
24691991 AATAATAATATAATAATATTATTATTAATTTATTAA
1 AATAATAAT-TAATAATATTATTATTAATTTATAAA
24692027 AATAATAATTAATAA-ATTGATTATTAAAATATTCATAAA
1 AATAATAATTAATAATATT-ATTATT--AAT-TT-ATAAA
*
24692066 AATAATTATTAATA
1 AATAATAATTAATA
24692080 TTTATAATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
34 3 0.07
35 12 0.26
36 9 0.20
37 3 0.07
38 2 0.04
39 17 0.37
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (35 bp):
AATAATAATTAATAATATTATTATTAATTTATAAA
Found at i:24692247 original size:47 final size:45
Alignment explanation
Indices: 24692172--24692281 Score: 118
Period size: 47 Copynumber: 2.4 Consensus size: 45
24692162 TAATTATTAT
24692172 TTATTATAATTAATGAATATAATATTTTT-ATTAAT-ATAAATATACA
1 TTATTATAATTAAT-AATATAATATTTTTGATTAATGATAAA-ATA-A
*
24692218 TTATTAATAATTAATAATGATTAAT-TTTTTGGATTATTGATAAAATAA
1 TTATT-ATAATTAATAAT-A-TAATATTTTT-GATTAATGATAAAATAA
*
24692266 TTATGATAATTAATAA
1 TTATTATAATTAATAA
24692282 AATATTTATT
Statistics
Matches: 56, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
46 8 0.14
47 26 0.46
48 9 0.16
49 8 0.14
50 5 0.09
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.47
Consensus pattern (45 bp):
TTATTATAATTAATAATATAATATTTTTGATTAATGATAAAATAA
Found at i:24692392 original size:44 final size:37
Alignment explanation
Indices: 24692362--24692437 Score: 111
Period size: 38 Copynumber: 2.1 Consensus size: 37
24692352 ACTTTATTCC
24692362 TAATATTATAATAAATAATAATAATCAAATATTATTAT
1 TAATATTATAATAAATAATAATAAT-AAATATTATTAT
*
24692400 TAATATTTATAAT-AATAATAATAAT-ATTATTATTAT
1 TAATA-TTATAATAAATAATAATAATAAATATTATTAT
24692436 TA
1 TA
24692438 TAAGACTATT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
36 12 0.33
38 17 0.47
39 7 0.19
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (37 bp):
TAATATTATAATAAATAATAATAATAAATATTATTAT
Found at i:24693952 original size:14 final size:13
Alignment explanation
Indices: 24693918--24693956 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
24693908 CAGTAAATAT
*
24693918 TAATATTTTAAT-
1 TAATATTTAAATG
24693930 TAATATTTAAATG
1 TAATATTTAAATG
24693943 TAATTATTTAAATG
1 TAA-TATTTAAATG
24693957 ATATAGATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 11 0.46
13 3 0.12
14 10 0.42
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (13 bp):
TAATATTTAAATG
Found at i:24694187 original size:180 final size:179
Alignment explanation
Indices: 24693977--24694951 Score: 805
Period size: 180 Copynumber: 5.5 Consensus size: 179
24693967 TAATTTAAGT
* * * *
24693977 AACAAGTTCAAATCGTTATGACTATTTGAATAATTATTTATTTCAAATTATTATGACTTTTTGTT
1 AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACTTTTTGTT
* *
24694042 TTGTCATAAAACAATTGTTTTTGTTCATAGTAGCTTA-TTGGAATAAAATAATATTAATTTATTA
66 TTGTCATAAAACAATTGTTTCTGTTCATAGAAGCTTATTTGGAATAAAATAATATTAATTTATTA
* * * * * *
24694106 ATATTTTGATAATTTATAAGTAAAAGATATAAAAAACAAATATGTTTGCCG
131 ATA-TTTCAAAATTAATAAGTAAAAGATTTAAAAAATAAAT-TGTTTACCG
* * * * * *
24694157 AACAAGTTTAAATAGTCATGAGTATTTGAATAATAATCTATTTCAAATCATCATGAGC-TTTTGT
1 AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA-CTTTTTGT
* * * * ** * *
24694221 TTTGTAATAAAATAATTGCTTCAGTTCATATTAGCCTATTT-G------A-GATA--AA---A-T
65 TTTGTCATAAAACAATTGTTTCTGTTCATAGAAGCTTATTTGGAATAAAATAATATTAATTTATT
* * * * *
24694272 AATATTTCAAAAATTAA-AGAGTAACAGAATTTTAAAAATGAATTTTCTTATCG
130 AATATTTC-AAAATTAATA-AGTAAAAG-ATTTAAAAAATAAATTGT-TTACCG
* * * * * * *
24694325 ATCAAGTTGAAATAGTTAGGACTATCTAAACAATTATCTATTTCAAAACATTATGACATTTTGTT
1 AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACTTTTTGTT
* * * * *
24694390 TTATCATAAAACAATTGGTTCTGTACAT-GCAAG-TGTATTTTGAATAAAATAATATAAATTTAT
66 TTGTCATAAAACAATTGTTTCTGTTCATAG-AAGCT-TATTTGGAATAAAATAATATTAATTTAT
* * * * * * *
24694453 TAATATTCCAAAAATTAGTAAGTATAA-TTTTAGAAAATAAAGTTGTTTTCTG
129 TAATATTTC-AAAATTAATAAGTAAAAGATTTAAAAAATAAA-TTGTTTACCG
* **
24694505 AACACA-TTCAAATAGTTATGACTATTTGAACAATT-TTTATTTCAAATCATTATGACCATTTGT
1 AACA-AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACTTTTTGT
* * * * *
24694568 TTTGTCATAAACCAATTGTTTCTGTTCAAACAAGCTTATTTGAAATAAAATAAT-TCTAATTAAT
65 TTTGTCATAAAACAATTGTTTCTGTTCATAGAAGCTTATTTGGAATAAAATAATAT-TAATTTAT
* *
24694632 TAATATTCCAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTATCG
129 TAATATTTCAAAATTAATAAGTAAAAGATTTAAAAAATAAA-TTGTTTACCG
** * * *
24694684 AGTAAGTTCAAATAGTTATGATTGTTTGAACAATTATTTATTTCAAATCATTATGA-TATTTTGT
1 AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACT-TTTTGT
* * * * *
24694748 TTTGTTATAAAACAATTGTTTCTATTCAT-GCAAGTTTATTTGGAATAAAATAATACTAATATAT
65 TTTGTCATAAAACAATTGTTTCTGTTCATAG-AAGCTTATTTGGAATAAAATAATATTAATTTAT
* * ** * *
24694812 TAACATTCTAAAAATTAATAAGTTGAAGATTTAAAAAATTAATTAGTTTACCA
129 TAATATT-TCAAAATTAATAAGTAAAAGATTTAAAAAATAAATT-GTTTACCG
* * * * ** ** *
24694865 AACTAGTTCAAATAGTCATGTCCATTTGAATTATTATCTATTTCAAATTGTTATGA-TATTTTAT
1 AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACT-TTTTGT
** *
24694929 TTTGTTGTAAAATAATTGTTTCT
65 TTTGTCATAAAACAATTGTTTCT
24694952 TATCGATCAA
Statistics
Matches: 631, Mismatches: 127, Indels: 73
0.76 0.15 0.09
Matches are distributed among these distances:
166 4 0.01
167 21 0.03
168 97 0.15
169 1 0.00
171 2 0.00
173 3 0.00
174 1 0.00
175 1 0.00
176 3 0.00
178 19 0.03
179 130 0.21
180 213 0.34
181 114 0.18
182 21 0.03
183 1 0.00
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.42
Consensus pattern (179 bp):
AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACTTTTTGTT
TTGTCATAAAACAATTGTTTCTGTTCATAGAAGCTTATTTGGAATAAAATAATATTAATTTATTA
ATATTTCAAAATTAATAAGTAAAAGATTTAAAAAATAAATTGTTTACCG
Found at i:24694578 original size:179 final size:179
Alignment explanation
Indices: 24694271--24694951 Score: 671
Period size: 179 Copynumber: 3.8 Consensus size: 179
24694261 TGAGATAAAA
* * * * * * *
24694271 TAATATTTCAAAAATTAA-AGAGTAACAGAATTTTAAAAATGAA-TTTTCTTATCGATCAAGTTG
1 TAATATTCCAAAAATTAATA-AGTAAAAG-ATTTAAAAAATAAAGTTGT-TTATCGAACAAGTTC
* * * * * *
24694334 AAATAGTTAGGACTATCTAAACAATTATCTATTTCAAAACATTATGACATTTTGTTTTATCATAA
63 AAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATGACATTTTGTTTTGTCATAA
* *
24694399 AACAATTGGTTCTGTACATGCAAGTGTATTTTGAATAAAATAATATAAATTTAT
128 AACAATTGTTTCTGTTCATGCAAGT-TATTTTGAATAAAATAATAT-AATTTAT
* * * *
24694453 TAATATTCCAAAAATTAGTAAGTATAA-TTTTAGAAAATAAAGTTGTTT-TCTGAACACA-TTCA
1 TAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAAGTTGTTTATC-GAACA-AGTTCA
24694515 AATAGTTATGACTATTTGAACAATT-TTTATTTCAAATCATTATGACCA-TTTGTTTTGTCATAA
64 AATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATGA-CATTTTGTTTTGTCATAA
* ** * *
24694578 ACCAATTGTTTCTGTTCAAACAAGCTTA-TTTGAAATAAAATAATTCTAATTAAT
128 AACAATTGTTTCTGTTCATGCAAG-TTATTTTG-AATAAAATAA-TATAATTTAT
* **
24694632 TAATATTCC-AAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTATCGAGTAAGTTCAAA
1 TAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAAGTTGTTTATCGAACAAGTTCAAA
* * * *
24694696 TAGTTATGATTGTTTGAACAATTATTTATTTCAAATCATTATGATATTTTGTTTTGTTATAAAAC
66 TAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATGACATTTTGTTTTGTCATAAAAC
* * *
24694761 AATTGTTTCTATTCATGCAAGTTTATTTGGAATAAAATAATACTAATATAT
131 AATTGTTTCTGTTCATGCAAG-TTATTTTGAATAAAATAATA-TAATTTAT
* * ** * * * *
24694812 TAACATTCTAAAAATTAATAAGTTGAAGATTTAAAAAATTAA-TTAGTTTACCAAACTAGTTCAA
1 TAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAAGTT-GTTTATCGAACAAGTTCAA
* * * ** * ** * * **
24694876 ATAGTCATGTCCATTTGAATTATTATCTATTTCAAATTGTTATGATATTTTATTTTGTTGTAAAA
65 ATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATGACATTTTGTTTTGTCATAAAA
*
24694941 TAATTGTTTCT
130 CAATTGTTTCT
24694952 TATCGATCAA
Statistics
Matches: 415, Mismatches: 67, Indels: 35
0.80 0.13 0.07
Matches are distributed among these distances:
178 20 0.05
179 130 0.31
180 130 0.31
181 113 0.27
182 21 0.05
183 1 0.00
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (179 bp):
TAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAAGTTGTTTATCGAACAAGTTCAAA
TAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATGACATTTTGTTTTGTCATAAAAC
AATTGTTTCTGTTCATGCAAGTTATTTTGAATAAAATAATATAATTTAT
Found at i:24695199 original size:30 final size:31
Alignment explanation
Indices: 24695151--24695213 Score: 85
Period size: 30 Copynumber: 2.0 Consensus size: 31
24695141 TAATTTAAAA
24695151 TGATAATTTTAAAATAATTAATAA-ATTATTAT
1 TGATAATTTT-AAATAATT-ATAATATTATTAT
*
24695183 TGATAATTTT-AATAATTATAATATTTTTAT
1 TGATAATTTTAAATAATTATAATATTATTAT
24695213 T
1 T
24695214 AAAATTATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 4 0.14
30 15 0.52
32 10 0.34
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.52
Consensus pattern (31 bp):
TGATAATTTTAAATAATTATAATATTATTAT
Found at i:24695825 original size:14 final size:16
Alignment explanation
Indices: 24695794--24695830 Score: 60
Period size: 14 Copynumber: 2.4 Consensus size: 16
24695784 AGTAACTTTA
24695794 ATAATTATTAAGATAT
1 ATAATTATTAAGATAT
24695810 ATAATTA-TAA-ATAT
1 ATAATTATTAAGATAT
24695824 ATAATTA
1 ATAATTA
24695831 ATAGTATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 11 0.52
15 3 0.14
16 7 0.33
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (16 bp):
ATAATTATTAAGATAT
Found at i:24695880 original size:17 final size:18
Alignment explanation
Indices: 24695858--24695892 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
24695848 TTTAACAAAC
24695858 TATTTAAACTAT-ATATT
1 TATTTAAACTATAATATT
*
24695875 TATTTACACTATAATATT
1 TATTTAAACTATAATATT
24695893 GATATGAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (18 bp):
TATTTAAACTATAATATT
Found at i:24695973 original size:16 final size:15
Alignment explanation
Indices: 24695935--24695982 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 15
24695925 AACTTAACTA
*
24695935 ATATAATCTAATATT
1 ATATAATTTAATATT
24695950 ATATAA-TTATATATT
1 ATATAATTTA-ATATT
24695965 ATAATAATTTAATATT
1 AT-ATAATTTAATATT
24695981 AT
1 AT
24695983 TAAATTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 2 0.07
15 13 0.45
16 11 0.38
17 3 0.10
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATAATTTAATATT
Found at i:24696344 original size:22 final size:23
Alignment explanation
Indices: 24696256--24696375 Score: 83
Period size: 22 Copynumber: 5.3 Consensus size: 23
24696246 ATATATTATA
24696256 ATATTATAATACTATATATAAT-AT
1 ATATTATAA-ACTATAT-TAATCAT
* * *
24696280 AATATTAGTTAATTATATTAATTAGT
1 -ATATTA-TAAACTATATTAATCA-T
* *
24696306 -TA-TATAAAATATATTAATTAT
1 ATATTATAAACTATATTAATCAT
24696327 AT-TTAATAAACTAT-TTAATCAT
1 ATATT-ATAAACTATATTAATCAT
*
24696349 ATATTATTAACTATATTAA-CAT
1 ATATTATAAACTATATTAATCAT
24696371 A-ATTA
1 ATATTA
24696376 AACATAAATA
Statistics
Matches: 80, Mismatches: 7, Indels: 20
0.75 0.07 0.19
Matches are distributed among these distances:
21 5 0.06
22 37 0.46
23 16 0.20
24 6 0.08
25 13 0.16
26 3 0.04
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (23 bp):
ATATTATAAACTATATTAATCAT
Found at i:24696441 original size:16 final size:17
Alignment explanation
Indices: 24696394--24696441 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
24696384 TAAAGTTTTG
24696394 ATATATATTATTATAATT
1 ATATATATTA-TATAATT
24696412 -TACTAT-TTATATAATT
1 ATA-TATATTATATAATT
24696428 ATATATATTA-ATAA
1 ATATATATTATATAA
24696442 ATATTGGCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
16 14 0.52
17 10 0.37
18 3 0.11
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
ATATATATTATATAATT
Found at i:24696819 original size:24 final size:26
Alignment explanation
Indices: 24696752--24696820 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 26
24696742 TATAATAGAT
24696752 AATAGTTATATTAATTAATTTATTAATA
1 AATAGTTA-ATTAATTAA-TTATTAATA
*
24696780 AATA-TTAAAATT-ATTAA-TATT-TTA
1 AATAGTT--AATTAATTAATTATTAATA
24696804 AATAGTTAATTAATTAA
1 AATAGTTAATTAATTAA
24696821 ATAATAATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 12
0.73 0.02 0.24
Matches are distributed among these distances:
23 4 0.11
24 11 0.31
25 6 0.17
27 7 0.19
28 7 0.19
29 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (26 bp):
AATAGTTAATTAATTAATTATTAATA
Found at i:24697088 original size:17 final size:17
Alignment explanation
Indices: 24697066--24697098 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
24697056 TTATCAAATA
24697066 ATTTATATAA-ATTATTT
1 ATTTAT-TAATATTATTT
24697083 ATTTATTAATATTATT
1 ATTTATTAATATTATT
24697099 AATTACTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTATTAATATTATTT
Found at i:24697334 original size:35 final size:36
Alignment explanation
Indices: 24697290--24697364 Score: 91
Period size: 35 Copynumber: 2.1 Consensus size: 36
24697280 ATTATAAATC
* *
24697290 ATAATATTATATAAATTATTTA-AAATTTATATTAAT
1 ATAATATTATA-AAATTATTAATAAATTTAGATTAAT
* *
24697326 ATAA-ATTATAAATTTATTAATAAATTTAGATTACT
1 ATAATATTATAAAATTATTAATAAATTTAGATTAAT
24697361 ATAA
1 ATAA
24697365 GTATAGAGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
34 8 0.24
35 22 0.65
36 4 0.12
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (36 bp):
ATAATATTATAAAATTATTAATAAATTTAGATTAAT
Found at i:24697342 original size:23 final size:24
Alignment explanation
Indices: 24697293--24697342 Score: 68
Period size: 26 Copynumber: 2.1 Consensus size: 24
24697283 ATAAATCATA
24697293 ATATTATATAAATTATTTAAAATTT
1 ATATTATATAAATTA-TTAAAATTT
24697318 ATATTAATATAAATTA-T-AAATTT
1 ATATT-ATATAAATTATTAAAATTT
24697341 AT
1 AT
24697343 TAATAAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
23 8 0.33
24 1 0.04
25 5 0.21
26 10 0.42
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
ATATTATATAAATTATTAAAATTT
Found at i:24697526 original size:16 final size:16
Alignment explanation
Indices: 24697507--24697540 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
24697497 ATTAATATAC
* *
24697507 TAATTTTATAATTAAT
1 TAATTTAATAATAAAT
24697523 TAATTTAATAATAAAT
1 TAATTTAATAATAAAT
24697539 TA
1 TA
24697541 TTAAATTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TAATTTAATAATAAAT
Found at i:24697564 original size:34 final size:34
Alignment explanation
Indices: 24697512--24697590 Score: 108
Period size: 34 Copynumber: 2.4 Consensus size: 34
24697502 TATACTAATT
*
24697512 TTATAATTAATTAATTTAATAATAAATTATTAAA
1 TTATAATTAATTAATTTAATAATAAATTAATAAA
* *
24697546 TTATAATTATATT-GTTTAATATTAAATTAATAAA
1 TTATAATTA-ATTAATTTAATAATAAATTAATAAA
24697580 TTATAA-TAATT
1 TTATAATTAATT
24697591 TAAATACATA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
32 3 0.07
33 2 0.05
34 33 0.80
35 3 0.07
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (34 bp):
TTATAATTAATTAATTTAATAATAAATTAATAAA
Found at i:24697601 original size:23 final size:23
Alignment explanation
Indices: 24697562--24697615 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
24697552 TTATATTGTT
* *
24697562 TAATATTAAATTAATAAATTATAA
1 TAAT-TTAAATTAATAAACTAAAA
24697586 TAATTTAAA-TACATAAACTAAAA
1 TAATTTAAATTA-ATAAACTAAAA
24697609 TAATTTA
1 TAATTTA
24697616 TTAATATAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 2 0.07
23 21 0.78
24 4 0.15
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (23 bp):
TAATTTAAATTAATAAACTAAAA
Found at i:24697721 original size:27 final size:28
Alignment explanation
Indices: 24697691--24697761 Score: 72
Period size: 27 Copynumber: 2.5 Consensus size: 28
24697681 ATTTTAGATA
** * *
24697691 AATAATATTTTTATAATTTATCA-ATTT
1 AATAATATAATTATAATTAATAATATTT
*
24697718 AATATTATAATTATAATTAATAATATTT
1 AATAATATAATTATAATTAATAATATTT
24697746 AATAATTATAAATTAT
1 AATAA-TAT-AATTAT
24697762 TAATAAATGT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
27 18 0.51
28 8 0.23
29 3 0.09
30 6 0.17
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (28 bp):
AATAATATAATTATAATTAATAATATTT
Found at i:24698591 original size:24 final size:21
Alignment explanation
Indices: 24698536--24698604 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
24698526 AATAAATAAC
*
24698536 TATT-AATATTATTAATAAAT
1 TATTCAATATAATTAATAAAT
24698556 TATTC-ATAATAATTAATATTAAT
1 TATTCAAT-ATAATTAATA--AAT
24698579 TATATCAATATAAGTT-ATAAAT
1 TAT-TCAATATAA-TTAATAAAT
24698601 TATT
1 TATT
24698605 ACTATAAATT
Statistics
Matches: 41, Mismatches: 1, Indels: 13
0.75 0.02 0.24
Matches are distributed among these distances:
20 6 0.15
21 10 0.24
22 6 0.15
23 6 0.15
24 9 0.22
25 4 0.10
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (21 bp):
TATTCAATATAATTAATAAAT
Found at i:24698716 original size:8 final size:8
Alignment explanation
Indices: 24698652--24698742 Score: 66
Period size: 8 Copynumber: 11.2 Consensus size: 8
24698642 AATATATTTT
24698652 TAATA-TA
1 TAATATTA
24698659 TAA-ATTA
1 TAATATTA
24698666 TTAA-ATTA
1 -TAATATTA
24698674 TAACTATTAA
1 TAA-TATT-A
24698684 TAATAGTTA
1 TAATA-TTA
24698693 TAATATTA
1 TAATATTA
24698701 T-ATAATTA
1 TAAT-ATTA
24698709 TAATATTA
1 TAATATTA
* *
24698717 CAATATGA
1 TAATATTA
*
24698725 -AATATAA
1 TAATATTA
24698732 TAATAATTA
1 TAAT-ATTA
24698741 TA
1 TA
24698743 TTAAAATTAA
Statistics
Matches: 70, Mismatches: 4, Indels: 18
0.76 0.04 0.20
Matches are distributed among these distances:
6 1 0.01
7 16 0.23
8 29 0.41
9 18 0.26
10 6 0.09
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (8 bp):
TAATATTA
Found at i:24698744 original size:29 final size:26
Alignment explanation
Indices: 24698702--24698772 Score: 70
Period size: 26 Copynumber: 2.6 Consensus size: 26
24698692 ATAATATTAT
* *
24698702 ATAATTATAATATTACAATATGAAATATA
1 ATAATAATTATATTA-AA-ATGAAATA-A
* *
24698731 ATAATAATTATATTAAAATTAATTAA
1 ATAATAATTATATTAAAATGAAATAA
*
24698757 ATAATAATTTTATTAA
1 ATAATAATTATATTAA
24698773 TATTAAAATT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
26 16 0.43
27 6 0.16
28 2 0.05
29 13 0.35
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (26 bp):
ATAATAATTATATTAAAATGAAATAA
Found at i:24698764 original size:32 final size:31
Alignment explanation
Indices: 24698694--24698783 Score: 78
Period size: 32 Copynumber: 2.9 Consensus size: 31
24698684 TAATAGTTAT
* * *
24698694 AATATTATATAATTATAATATTACAA-T-ATGA
1 AATATAATATAA-T-TAATATTAAAATTAATTA
24698725 AATATAATAATAATT-ATATTAAAATTAATTA
1 AATATAAT-ATAATTAATATTAAAATTAATTA
* *
24698756 AATAATAATTTTATTAATATTAAAATTA
1 AAT-ATAATATAATTAATATTAAAATTA
24698784 TATAAATTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
29 8 0.16
30 2 0.04
31 18 0.37
32 21 0.43
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (31 bp):
AATATAATATAATTAATATTAAAATTAATTA
Found at i:24699030 original size:22 final size:23
Alignment explanation
Indices: 24698981--24699040 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 23
24698971 TCCAAAATAA
*
24698981 AATAACTATTTTATTATAATATTAT
1 AATAA-TA-TTTATTATAATAGTAT
24699006 AAT-ATATTTATTATAAT-GTACT
1 AATAATATTTATTATAATAGTA-T
24699028 AATAAATATTTAT
1 AAT-AATATTTAT
24699041 ACTTAGGAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 2 0.06
22 15 0.48
23 2 0.06
24 9 0.29
25 3 0.10
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (23 bp):
AATAATATTTATTATAATAGTAT
Found at i:24699189 original size:15 final size:15
Alignment explanation
Indices: 24699166--24699201 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
24699156 ACATGTATAT
*
24699166 TATATTATATTTAAA
1 TATAATATATTTAAA
*
24699181 TATAATATATTTAAT
1 TATAATATATTTAAA
24699196 TATAAT
1 TATAAT
24699202 TAAAATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATAATATATTTAAA
Found at i:24699221 original size:24 final size:24
Alignment explanation
Indices: 24699161--24699221 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 24
24699151 ATTTGACATG
*
24699161 TATATTATATTATATTTAAATATAA
1 TATATT-TATTATAATTAAATATAA
24699186 TATATTTAATTATAATTAAA-ATAA
1 TATATTT-ATTATAATTAAATATAA
24699210 TATATATTATTA
1 TATAT-TTATTA
24699222 CTATAATTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
24 14 0.42
25 19 0.58
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
TATATTTATTATAATTAAATATAA
Found at i:24699429 original size:18 final size:18
Alignment explanation
Indices: 24699408--24699449 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
24699398 AATATTATAC
24699408 AAATAACTA-ATTTATATT
1 AAATAACTATATTT-TATT
* *
24699426 AAATTATTATATTTTATT
1 AAATAACTATATTTTATT
24699444 AAATAA
1 AAATAA
24699450 AATTTTTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
AAATAACTATATTTTATT
Found at i:24699738 original size:18 final size:18
Alignment explanation
Indices: 24699717--24699755 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
24699707 AAATATTAAA
*
24699717 ATTTCAAATAATAGAATT
1 ATTTCAAATAATAAAATT
* *
24699735 ATTTGAAGTAATAAAATT
1 ATTTCAAATAATAAAATT
24699753 ATT
1 ATT
24699756 GATATGATTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.41
Consensus pattern (18 bp):
ATTTCAAATAATAAAATT
Found at i:24700360 original size:16 final size:16
Alignment explanation
Indices: 24700339--24700390 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
24700329 AATTTAATAA
24700339 ATTATTAACTATTTAT
1 ATTATTAACTATTTAT
*
24700355 ATTATTAAATA-TTAT
1 ATTATTAACTATTTAT
*
24700370 ATTAATAACATATTTAAT
1 ATTATTAAC-TATTT-AT
24700388 ATT
1 ATT
24700391 TTTTAAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 11 0.37
16 12 0.40
17 2 0.07
18 5 0.17
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTATTAACTATTTAT
Found at i:24701096 original size:17 final size:17
Alignment explanation
Indices: 24701056--24701087 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
24701046 GTTTAATTAT
24701056 CAATTATATATTAATAA
1 CAATTATATATTAATAA
24701073 CAATTAT-TATTAATA
1 CAATTATATATTAATA
24701088 GAATATTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (17 bp):
CAATTATATATTAATAA
Found at i:24702584 original size:22 final size:23
Alignment explanation
Indices: 24702559--24702601 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
24702549 CATTATTTAT
*
24702559 TATATAATTATTA-TAAATTAAA
1 TATATAATAATTAGTAAATTAAA
*
24702581 TATATTATAATTAGTAAATTA
1 TATATAATAATTAGTAAATTA
24702602 GTTAATACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (23 bp):
TATATAATAATTAGTAAATTAAA
Found at i:24702669 original size:15 final size:14
Alignment explanation
Indices: 24702635--24702672 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
24702625 TTTGATTATT
24702635 TAATATTTTTATAC
1 TAATATTTTTATAC
24702649 TAATATTATTTGATA-
1 TAATATT-TTT-ATAC
24702664 TAATATTTT
1 TAATATTTT
24702673 ACACATAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 9 0.41
15 10 0.45
16 3 0.14
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (14 bp):
TAATATTTTTATAC
Found at i:24702937 original size:23 final size:19
Alignment explanation
Indices: 24702906--24702949 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 19
24702896 ATATGTTATA
24702906 AATTTATATTGTAAATTATAAT
1 AATTTATA-T-TAAATT-TAAT
24702928 AATTTAATATTAAATTTAAT
1 AATTT-ATATTAAATTTAAT
24702948 AA
1 AA
24702950 CAATATTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 6 0.29
21 6 0.29
22 6 0.29
23 3 0.14
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
AATTTATATTAAATTTAAT
Found at i:24703201 original size:22 final size:22
Alignment explanation
Indices: 24703176--24703221 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
24703166 ATATCGATAA
*
24703176 TTAAATAATAAA-ATTTAAATAT
1 TTAAAT-ATAAATATTTAAAAAT
*
24703198 TTAAATTTAAATATTTAAAAAT
1 TTAAATATAAATATTTAAAAAT
24703220 TT
1 TT
24703222 TAATTATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
TTAAATATAAATATTTAAAAAT
Found at i:24703211 original size:14 final size:14
Alignment explanation
Indices: 24703176--24703216 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
24703166 ATATCGATAA
* *
24703176 TTAAATAATAAAAT
1 TTAAATATTTAAAT
24703190 TTAAATATTTAAAT
1 TTAAATATTTAAAT
24703204 TTAAATATTTAAA
1 TTAAATATTTAAA
24703217 AATTTTAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TTAAATATTTAAAT
Found at i:24703226 original size:22 final size:21
Alignment explanation
Indices: 24703184--24703226 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
24703174 AATTAAATAA
*
24703184 TAAAATTTAAATATTTAAATT
1 TAAAATTTAAAAATTTAAATT
*
24703205 TAAATATTTAAAAATTTTAATT
1 TAAA-ATTTAAAAATTTAAATT
24703227 ATTAACATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
TAAAATTTAAAAATTTAAATT
Found at i:24703341 original size:21 final size:21
Alignment explanation
Indices: 24703315--24703411 Score: 82
Period size: 21 Copynumber: 4.8 Consensus size: 21
24703305 CTATTTGAAC
*
24703315 AATTATTTATATATATATTTT
1 AATTATTTATATATATATATT
*
24703336 AATTA--TA-ATTTATA-ATCT
1 AATTATTTATATATATATAT-T
24703354 AATTATTTATATTATATATATT
1 AATTATTTATA-TATATATATT
*
24703376 CATTA-TTATAT-TATATAATT
1 AATTATTTATATATATAT-ATT
*
24703396 AATAATTTA-ATATATA
1 AATTATTTATATATATA
24703412 ATTTCTCTAG
Statistics
Matches: 61, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
17 1 0.02
18 12 0.20
19 7 0.11
20 11 0.18
21 18 0.30
22 10 0.16
23 2 0.03
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
AATTATTTATATATATATATT
Found at i:24703404 original size:42 final size:39
Alignment explanation
Indices: 24703319--24703411 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 39
24703309 TTGAACAATT
* *
24703319 ATTTATATATATATTTTAATTATAATTTATAATCTAATT
1 ATTTATATATATATATTAATTATAATTTATAATCTAATA
*
24703358 ATTTATATTATATATATTCATTATTATATTATATAAT-TAATA
1 ATTTATA-TATATATATTAATTA-TA-ATT-TATAATCTAATA
24703400 ATTTA-ATATATA
1 ATTTATATATATA
24703412 ATTTCTCTAG
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
39 7 0.15
40 19 0.40
41 3 0.06
42 12 0.26
43 6 0.13
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (39 bp):
ATTTATATATATATATTAATTATAATTTATAATCTAATA
Found at i:24703409 original size:19 final size:20
Alignment explanation
Indices: 24703335--24703414 Score: 72
Period size: 22 Copynumber: 3.9 Consensus size: 20
24703325 ATATATATTT
*
24703335 TAATTATAATTTATAATCTAA
1 TAATTATAATATATAAT-TAA
* * *
24703356 TTATTTATATTATATATATTCA
1 -TAATTATAATATATA-ATTAA
* *
24703378 TTATTATATTATATAATTAA
1 TAATTATAATATATAATTAA
24703398 TAATT-TAATATATAATT
1 TAATTATAATATATAATT
24703415 TCTCTAGTGA
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
19 11 0.23
20 8 0.17
21 13 0.27
22 14 0.29
23 2 0.04
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (20 bp):
TAATTATAATATATAATTAA
Found at i:24703595 original size:21 final size:20
Alignment explanation
Indices: 24703566--24703628 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 20
24703556 AATTATACAT
24703566 ATAAT-TAATTATATTAATAA
1 ATAATATAA-TATATTAATAA
*
24703586 ATAATATAATA-AGTTCAATTA
1 ATAATATAATATA-TT-AATAA
*
24703607 ATATTATAATATTATTAATAA
1 ATAATATAATA-TATTAATAA
24703628 A
1 A
24703629 CTATATTAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
19 1 0.03
20 9 0.26
21 22 0.63
22 2 0.06
23 1 0.03
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAATATAATATATTAATAA
Found at i:24703661 original size:13 final size:13
Alignment explanation
Indices: 24703643--24703672 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
24703633 ATTAAGTATA
24703643 ATTATATATAATT
1 ATTATATATAATT
24703656 ATTATATATAATT
1 ATTATATATAATT
24703669 ATTA
1 ATTA
24703673 CAATTGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTATATATAATT
Found at i:24704206 original size:3 final size:3
Alignment explanation
Indices: 24704136--24704190 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
24704126 TAATATAATA
24704136 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
24704184 TAT TAT T
1 TAT TAT T
24704191 TGGTTATGGA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:24704225 original size:9 final size:9
Alignment explanation
Indices: 24704122--24704275 Score: 80
Period size: 9 Copynumber: 16.4 Consensus size: 9
24704112 TATTAATGAG
*
24704122 TAATTAATA
1 TAATTATTA
24704131 TAATATATTA
1 TAAT-TATTA
*
24704141 TTATTATTA
1 TAATTATTA
*
24704150 TTATTATTA
1 TAATTATTA
*
24704159 TTATTATTA
1 TAATTATTA
*
24704168 TTATTATTA
1 TAATTATTA
*
24704177 TTATTATTA
1 TAATTATTA
* *
24704186 TTATTTGGTTA
1 -TAATT-ATTA
*
24704197 TGGATTATTA
1 T-AATTATTA
**
24704207 -AACCATTA
1 TAATTATTA
24704215 TAATTATTA
1 TAATTATTA
24704224 TATTATATATTA
1 TA--AT-TATTA
*
24704236 TATTTATTA
1 TAATTATTA
24704245 TAATATAATTA
1 TAAT-T-ATTA
**
24704256 TAAAAATTA
1 TAATTATTA
24704265 T-ATT-TTA
1 TAATTATTA
24704272 TAAT
1 TAAT
24704276 CCATTTTTGG
Statistics
Matches: 115, Mismatches: 19, Indels: 23
0.73 0.12 0.15
Matches are distributed among these distances:
7 4 0.03
8 8 0.07
9 66 0.57
10 16 0.14
11 14 0.12
12 7 0.06
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (9 bp):
TAATTATTA
Found at i:24704228 original size:14 final size:14
Alignment explanation
Indices: 24704211--24704268 Score: 50
Period size: 14 Copynumber: 4.2 Consensus size: 14
24704201 TTATTAAACC
24704211 ATTATAATTATTAT
1 ATTATAATTATTAT
*
24704225 ATTATATATTATATTT
1 ATTATA-ATTAT-TAT
24704241 ATTATAA-TA-TA-
1 ATTATAATTATTAT
**
24704252 ATTATAAAAATTAT
1 ATTATAATTATTAT
24704266 ATT
1 ATT
24704269 TTATAATCCA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
11 7 0.19
12 2 0.06
13 2 0.06
14 11 0.31
15 6 0.17
16 8 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
ATTATAATTATTAT
Found at i:24704841 original size:111 final size:111
Alignment explanation
Indices: 24704712--24704916 Score: 295
Period size: 111 Copynumber: 1.8 Consensus size: 111
24704702 TATAGTTATC
*
24704712 TTTGAACAATTATCTATTTCAAATAATTATGACCA-TTTGTTTTGTCATAAACCAATTGTTTCCA
1 TTTGAACAATTATCTATTTCAAATAATTATGA-CATTTTGTTTTGTCATAAAACAATTGTTTCCA
*
24704776 TTTATACAAGCATATTTGAAATAAAATAATTCAAATTGTTATGACTG
65 TTCATACAAGCATATTTGAAATAAAATAATTCAAATTGTTATGACTG
* * * * * *
24704823 TTTGAACAATTTTTTATTTCAAATAGTTATGATATTTTGTTTTGTCCTAAAACAATTGTTTCTAT
1 TTTGAACAATTATCTATTTCAAATAATTATGACATTTTGTTTTGTCATAAAACAATTGTTTCCAT
** *
24704888 TCATACAAGTTTATTTGGAATAAAATAAT
66 TCATACAAGCATATTTGAAATAAAATAAT
24704917 ACTAATTGAT
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
110 1 0.01
111 81 0.99
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.44
Consensus pattern (111 bp):
TTTGAACAATTATCTATTTCAAATAATTATGACATTTTGTTTTGTCATAAAACAATTGTTTCCAT
TCATACAAGCATATTTGAAATAAAATAATTCAAATTGTTATGACTG
Found at i:24706100 original size:11 final size:11
Alignment explanation
Indices: 24706084--24706127 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 11
24706074 TACTAATAAT
24706084 TAATATTATTA
1 TAATATTATTA
24706095 TAATATAATAATTA
1 TAATAT--T-ATTA
*
24706109 TAATATTTTTA
1 TAATATTATTA
24706120 TAATATTA
1 TAATATTA
24706128 GTAATTTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 16 0.57
12 1 0.04
13 1 0.04
14 10 0.36
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
TAATATTATTA
Found at i:24706112 original size:25 final size:23
Alignment explanation
Indices: 24706077--24706125 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 23
24706067 ATAACATTAC
24706077 TAATAATTAATATTATTATAATA
1 TAATAATTAATATTATTATAATA
*
24706100 TAATAATTATAATATTTTTATAATA
1 TAATAA-T-TAATATTATTATAATA
24706125 T
1 T
24706126 TAGTAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 6 0.26
24 1 0.04
25 16 0.70
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TAATAATTAATATTATTATAATA
Found at i:24706855 original size:14 final size:14
Alignment explanation
Indices: 24706829--24706866 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
24706819 TAGTATTATT
24706829 TTATTAA-TAATAA
1 TTATTAATTAATAA
24706842 -TATTTAATTAATAA
1 TTA-TTAATTAATAA
24706856 TTATTAATTAA
1 TTATTAATTAA
24706867 ATTAATTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 2 0.09
13 4 0.18
14 14 0.64
15 2 0.09
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TTATTAATTAATAA
Found at i:24707104 original size:16 final size:18
Alignment explanation
Indices: 24707085--24707127 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
24707075 ATTATTTAAT
*
24707085 ATTATTA-ATATTAG-TA
1 ATTATTATATAGTAGTTA
24707101 ATTATTATATAGTAGTTTA
1 ATTATTATATAGTAG-TTA
24707120 ATTATTAT
1 ATTATTAT
24707128 CTTAATTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 7 0.30
17 6 0.26
19 10 0.43
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (18 bp):
ATTATTATATAGTAGTTA
Found at i:24707899 original size:326 final size:332
Alignment explanation
Indices: 24707293--24707899 Score: 777
Period size: 326 Copynumber: 1.8 Consensus size: 332
24707283 ATTCATAATG
* * * *
24707293 ATTTGAATTAGATAATTGTTCATATAATCTTAACTATTTGAACTGGTTTGGCAAACAAATTTATT
1 ATTTGAAATAGATAATTATTCATATAATCTTAACTATTTGAACTGGTTCGACAAACAAATTTATT
* * * * *
24707358 TTTTAAATCACTTAGTTATTAATTTTTGGAATATTATTAAATTAGTATTGTTTTATTTCGAATAA
66 TTTTAAAT-ACTTACTTATTAATTGTTGGAATATTATTAAATTAGTATTATTTGAATTCGAATAA
* * * * * * * *
24707423 GCTTGTATGAACAGAAATAATTATTTTATGGCATAGCAAAAGGTTATAACGATTTGAAGTATAGA
130 GCTAGTATGAAAAGAAACAATTATTTTATGACATAGAAAAAGATCATAAAGATTTGAAGTATAGA
* * * *
24707488 ATTGTTCAAATAGTCATAACTATTTAAACTGGTTTGGTAAACAAATTCATTTTTTAAATGTCTTA
195 ATTGTTCAAATAGTCATAAATATTTAAACTAGTTTAGTAAACAAATTCATTTTTTAAATCTCTTA
* **
24707553 TTAATTTTTGAAAGATTAATAAATTGTTATTATTATTTTATTTCGAATAAGCTTGTATGGTCAAA
260 TTAATTATCAAAAGATTAATAAATTGTTATTATTATTTTATTTCGAATAAGCTTGTATGGTCAAA
24707618 CACTTATT
325 CACTTATT
* *
24707626 ATTTGAAATAGATAATTATTC-TAATAGTCTTAACTATTTGAACTGGTTCGACAAACACATTTA-
1 ATTTGAAATAGATAATTATTCAT-ATAATCTTAACTATTTGAACTGGTTCGACAAACAAATTTAT
24707689 TTTTTAAAT-C-T-CTTATTAATTGTTGGAATATTATTAAATTAGTATTATTTGAATT-GAATAA
65 TTTTTAAATACTTACTTATTAATTGTTGGAATATTATTAAATTAGTATTATTTGAATTCGAATAA
* *
24707750 GCTAGTATGAAAAGAAACACTTTTTTTATGACA-A-AATAAAGATCATAAAGATTTG-AG-ATAG
130 GCTAGTATGAAAAGAAACAATTATTTTATGACATAGAA-AAAGATCATAAAGATTTGAAGTATAG
* * * * *
24707811 ATAATTGTTCAAATAGTCATAAATATTTGAACTATTTTAGTAAATAGATT-TTGTTTTTAAATCT
194 --AATTGTTCAAATAGTCATAAATATTTAAACTAGTTTAGTAAACAAATTCAT-TTTTTAAATCT
*
24707875 CTTATTAATTATCAAAATATTAATA
256 CTTATTAATTATCAAAAGATTAATA
24707900 GATCAATATT
Statistics
Matches: 235, Mismatches: 34, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
324 4 0.02
325 4 0.02
326 88 0.37
327 33 0.14
328 39 0.17
329 1 0.00
330 1 0.00
332 10 0.04
333 55 0.23
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.43
Consensus pattern (332 bp):
ATTTGAAATAGATAATTATTCATATAATCTTAACTATTTGAACTGGTTCGACAAACAAATTTATT
TTTTAAATACTTACTTATTAATTGTTGGAATATTATTAAATTAGTATTATTTGAATTCGAATAAG
CTAGTATGAAAAGAAACAATTATTTTATGACATAGAAAAAGATCATAAAGATTTGAAGTATAGAA
TTGTTCAAATAGTCATAAATATTTAAACTAGTTTAGTAAACAAATTCATTTTTTAAATCTCTTAT
TAATTATCAAAAGATTAATAAATTGTTATTATTATTTTATTTCGAATAAGCTTGTATGGTCAAAC
ACTTATT
Found at i:24708247 original size:181 final size:180
Alignment explanation
Indices: 24707626--24709237 Score: 1282
Period size: 181 Copynumber: 9.0 Consensus size: 180
24707616 AACACTTATT
* * * * * *
24707626 ATTTGAAATAGATAATTATTCTAATAGTCTTAACTATTTGAAC-TGGTTCGACAAACACATTTA-
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTAG-TAAACAAATTTAT
* * * * * *
24707689 TTTTTAAA--TCT-CTTATTAATTGTTGGAATATTATTAAATTAGTATTATTTGAATT-GAATAA
65 TTTTTAAATCTCTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATAA
* * * * * *
24707750 GCTAGTATGAAAAGAAACACTTTTTTTATGACAAAA-TAAAGATCATAAAG
130 GCTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACG
* * * * *
24707800 ATTTGAGATAGATAATTGTTCAAATAGTCATAAATATTTGAACTAT-TTTAGTAAATAGATTT-T
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT-TGTTTAGTAAACAAATTTAT
* * * * * * * *
24707863 GTTTTTAAA--TCT-CTTATTAATTATCAAAATATTAATAGATCAATATTATTATA-TTCTGAAT
65 -TTTTTAAATCTCTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTC-AAAT
* * * ***
24707924 AA--TTGTACATGAACATAAATAATTGTTTTACGACAAAACAAAATG-TCATTGTG
128 AAGCTTGT--ATGAACAGAAACAATTGTTTTATGACAAAACAAAA-GATCATAACG
** * * **
24707977 ATTTGAAATAGATAA--AGTTCAAATAAACATGACTATTTAAACTTGTTCGGTAAACAAATTTAT
1 ATTTGAAATAGATAATTA-TTCAAATAGTCATAACTATTTGAACTTGTTTAGTAAACAAATTTAT
* * * *
24708040 GTTTTAAATCTCAAACTTATTAATTTTTAGAATACTAATAAATTAGTATTATTTAATTTCAAATA
65 TTTTTAAATCTC-TACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATA
** * *
24708105 AAATTGTATGAAAAGAAATAATTGTTTTATGACAAAACAAAAGATCATAACG
129 AGCTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACG
* * *
24708157 ATTTGAAATAAATAATTATTCCAATAGTCATAACTATTTGAACTTGCTCT-GTAAACAAATTTAT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTG-TTTAGTAAACAAATTTAT
* * *
24708221 TTTTTAAATCTTCTACTTATTAATTTTTTGAATTTTAATAAATTAGTATTATTTTATTTCAAAAA
65 TTTTTAAATC-TCTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATA
* * * * * * *
24708286 AGCTTTTATGAACAGAAATAGTTGGTTTATGACAAAATAAAAAAGGTTATAACG
129 AGCTTGTATGAACAGAAACAATTGTTTTATGAC-AAA-ACAAAAGATCATAACG
* * * * * * * *
24708340 ATTTGAAATAAATAATTCTTTAAATAGTCATGACTATTTGAAATTGTTTAGAAAATATATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTAGTAAACAAATTTATT
* * * * *
24708405 TTTTAAAGT-TTTACTTATTGATTTTT-GAAACATTAATAAATTTA-AATTATTTTATTTGAAAT
66 TTTTAAA-TCTCTACTTATTAATTTTTAG-AATATTAATAAA-TTAGTATTATTTTATTTCAAAT
* * * * *
24708467 AAGCTTGCATGAACAGAACCAATTGTTTAATGACAAAATAAAAAGATCATAATG
128 AAGCTTGTATGAACAGAAACAATTGTTTTATGACAAAA-CAAAAGATCATAACG
* * * * * ** *
24708521 TTTTGAAATAGATAATTGTTGAGATAGTCATAACTATTTGAACTTATTCGGTCAAC--ATTT-TT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTAGTAAACAAATTTATT
* * * * *
24708583 TTTTAATTCTCTTACTCATTAATTTTTAGAATATTAATGAATTAGTATTATCTTACTTCAAATAA
66 TTTTAAATCTC-TACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATAA
* ** * * * * * *
24708648 GCTTATATGAATTGAAACAAGTGTTTTATTACAGAAGAAAAGGTCATAATG
130 GCTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACG
* * * * *
24708699 ATTTGAAATAGATAATTATTCAAATATTCATGACTATTTGAACTTGTTTATTAAATATATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTAGTAAACAAATTTATT
* * * * * * *
24708764 TTTTAAATCTTTTACTTATTAATTGTCAAAATATTTATAAATTAATATTATTTTAATTT-GAATA
66 TTTTAAATC-TCTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTT-ATTTCAAATA
* * * *
24708828 AACTTGTATGAACAGAAATAATTATTTTATGACAAAACAAAA-AGTCATAACA
129 AGCTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGA-TCATAACG
* * * * * * * *
24708880 AGTTGAAATAAATAATTACTCGAATAGCCATAA-TGATTTGAACTTGTTTGGTAAATAGATTTAT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACT-ATTTGAACTTGTTTAGTAAACAAATTTAT
24708944 TTTTTAAATCTCTTACTTATTAATTGTCTT--AATATTAATAAA-TATGTATTATTTTA-TTCAA
65 TTTTTAAATCTC-TACTTATTAATT-T-TTAGAATATTAATAAATTA-GTATTATTTTATTTC-A
* * * * *
24709005 AATAAGCTTAG-ATGAACAGAAAAAACATTATTTTATGACAAAACAAAATG-TTATAGCT
125 AATAAGCTT-GTATGAACAG-AAACA-ATTGTTTTATGACAAAACAAAA-GATCATAACG
* * * * * * * *
24709063 ATTTCAAATAGATAATTATTTAAATAGTCCTAATTATTTAAATTTGTTTAGAAAAC-AA-TCATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTAGTAAACAAATTTATT
* * * **
24709126 TTTTAAATCTCTTTA-TTATTACTTTTTGGATTATTAATAAATTAGTATTATTTTATTTTGAATA
66 TTTTAAATCTC--TACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATA
* * ** * * * *
24709190 AGTTTATATGAATTGAAACAATTCTTTAATGACAAAGCAAAAGGTCAT
129 AGCTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGATCAT
24709238 TGAAATAGAT
Statistics
Matches: 1146, Mismatches: 230, Indels: 119
0.77 0.15 0.08
Matches are distributed among these distances:
174 51 0.04
175 46 0.04
176 71 0.06
177 24 0.02
178 73 0.06
179 97 0.08
180 104 0.09
181 436 0.38
182 97 0.08
183 145 0.13
184 2 0.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (180 bp):
ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTAGTAAACAAATTTATT
TTTTAAATCTCTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATAAG
CTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGATCATAACG
Found at i:24708704 original size:542 final size:536
Alignment explanation
Indices: 24707626--24709026 Score: 1403
Period size: 542 Copynumber: 2.6 Consensus size: 536
24707616 AACACTTATT
* * * * *
24707626 ATTTGAAATAGATAATTATTCTAATAGTCTTAACTATTTGAACTGGT-TCGACAAACACATTTA-
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTCT-G-TAAACAAATTTAT
* * * * * * *
24707689 TTTTTAAA---TCT-CTTATTAATTGTTGGAATATTATTAAATTAGTATTATTTGAATTGAATAA
64 TTTTTAAATCTTCTACTTATTAATTGTTAGAATTTTAATAAATTAGTATTATTTTATTTAAAAAA
* * * * * * * * *
24707750 GCTAGTATGAAAAGAAACACTTTTTTTATGACAAAAT--AAAGATCATAAAGATTTGAGATAGAT
129 GCTTGTATGAACAGAAATAATTATTTTATGACAAAATAAAAAGGTCATAACGATTTGAAATAAAT
* *
24707813 AATTGTTCAAATAGTCATAAATATTTGAACTAT-TTTAGTAAATAGATTT-TGTTTTTAAA-TCT
194 AATTCTTCAAATAGTCAT-AATATTTGAACT-TGTTTAGTAAATAGATTTAT-TTTTTAAATTTT
** * * *
24707875 -CTTATTAATTATCAAAATATTAATAGA-TCAATATTATTATATTCTG-AATAA--TTGTACATG
256 ACTTATTAATT-TTTAAATATTAATAAATTTAA-ATTATTTTATT-TGAAATAAGCTTG--CATG
* * * * **
24707935 AACATAAATAATTGTTTTACGACAAAACAAAATGTCATTGTGATTTGAAATAGATAAAGTTCAAA
316 AACAGAAACAATTGTTTAACGACAAAACAAAAAGTCATAATGATTTGAAATAGATAAAGTTCAAA
* * *
24708000 TAAACATGACTATTTAAACTTGTTCGGTAAACAAATTTATGTTTTAAATCTCAAACTTATTAATT
381 TAAACATAACTATTTAAACTTATTCGGTAAAC-AATTTATGTTTTAAATCTCAAACTCATTAATT
* * * *
24708065 TTTAGAATACTAATAAATTAGTATTATTTAATTTCAAATAAAATTGTATGAAAAGAAATAATTGT
445 TTTAGAATACTAATAAATTAGTATTATTTAACTTCAAATAAAATTATATGAAAAGAAACAAGTGT
24708130 TTTATGACAAAACAAAAGATCATAACG
510 TTTATGACAAAACAAAAGATCATAACG
* *
24708157 ATTTGAAATAAATAATTATTCCAATAGTCATAACTATTTGAACTTGCTCTGTAAACAAATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTG-TCTGTAAACAAATTTATT
* *
24708222 TTTTAAATCTTCTACTTATTAATTTTTTGAATTTTAATAAATTAGTATTATTTTATTTCAAAAAA
65 TTTTAAATCTTCTACTTATTAATTGTTAGAATTTTAATAAATTAGTATTATTTTATTT-AAAAAA
* * ** *
24708287 GCTTTTATGAACAGAAATAGTTGGTTTATGACAAAATAAAAAAGGTTATAACGATTTGAAATAAA
129 GCTTGTATGAACAGAAATAATTATTTTATGACAAAAT-AAAAAGGTCATAACGATTTGAAATAAA
* * * * *
24708352 TAATTCTTTAAATAGTCATGACTATTTGAAATTGTTTAGAAAATATATTTATTTTTTAAAGTTTT
193 TAATTCTTCAAATAGTCAT-AATATTTGAACTTGTTTAGTAAATAGATTTATTTTTTAAA-TTTT
* *
24708417 ACTTATTGATTTTTGAAACATTAATAAATTTAAATTATTTTATTTGAAATAAGCTTGCATGAACA
256 ACTTATTAATTTTT-AAATATTAATAAATTTAAATTATTTTATTTGAAATAAGCTTGCATGAACA
* * * * * * *
24708482 GAACCAATTGTTTAATGACAAAATAAAAAGATCATAATGTTTTGAAATAGATAATTGTTGAGATA
320 GAAACAATTGTTTAACGACAAAACAAAAAG-TCATAATGATTTGAAATAGATAA-AGTTCAAATA
** * * * * **
24708547 GTCATAACTATTTGAACTTATTCGGTCAAC-ATTT-TTTTTTAATTCTCTTACTCATTAATTTTT
383 AACATAACTATTTAAACTTATTCGGTAAACAATTTATGTTTTAAATCTCAAACTCATTAATTTTT
* * ** **
24708610 AGAATATTAATGAATTAGTATTATCTT-ACTTCAAATAAGCTTATATGAATTGAAACAAGTGTTT
448 AGAATACTAATAAATTAGTATTAT-TTAACTTCAAATAAAATTATATGAAAAGAAACAAGTGTTT
* * * * *
24708674 TATTACAGAAGAAAAGGTCATAATG
512 TATGACAAAACAAAAGATCATAACG
* * * * * *
24708699 ATTTGAAATAGATAATTATTCAAATATTCATGACTATTTGAACTTGTTTATTAAATATATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTCT-GTAAACAAATTTATT
* * * * *
24708764 TTTTAAATCTTTTACTTATTAATTGTCAAAATATTT-ATAAATTAATATTATTTTAATTTGAATA
65 TTTTAAATCTTCTACTTATTAATTGTTAGAAT-TTTAATAAATTAGTATTATTTT-ATTT-AAAA
* * *
24708828 AA-CTTGTATGAACAGAAATAATTATTTTATGACAAAACAAAAA-GTCATAACAAGTTGAAATAA
127 AAGCTTGTATGAACAGAAATAATTATTTTATGACAAAATAAAAAGGTCATAACGATTTGAAATAA
* * *
24708891 ATAATTAC-TCGAATAGCCATAATGATTTGAACTTGTTTGGTAAATAGATTTATTTTTTAAATCT
192 ATAATT-CTTCAAATAGTCATAAT-ATTTGAACTTGTTTAGTAAATAGATTTATTTTTTAAAT-T
* ** **
24708955 CTTACTTATTAATTGTCTT-AATATTAATAAATATGTATTATTTTATTCAAAATAAGCTTAG-AT
254 -TTACTTATTAATT-T-TTAAATATTAATAAATTTAAATTATTTTATTTGAAATAAGCTT-GCAT
24709018 GAACAGAAA
315 GAACAGAAA
24709027 AAACATTATT
Statistics
Matches: 716, Mismatches: 120, Indels: 58
0.80 0.13 0.06
Matches are distributed among these distances:
531 52 0.07
532 10 0.01
533 1 0.00
535 3 0.00
536 38 0.05
537 34 0.05
539 4 0.01
540 135 0.19
541 65 0.09
542 231 0.32
543 86 0.12
544 23 0.03
545 34 0.05
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (536 bp):
ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTCTGTAAACAAATTTATTT
TTTAAATCTTCTACTTATTAATTGTTAGAATTTTAATAAATTAGTATTATTTTATTTAAAAAAGC
TTGTATGAACAGAAATAATTATTTTATGACAAAATAAAAAGGTCATAACGATTTGAAATAAATAA
TTCTTCAAATAGTCATAATATTTGAACTTGTTTAGTAAATAGATTTATTTTTTAAATTTTACTTA
TTAATTTTTAAATATTAATAAATTTAAATTATTTTATTTGAAATAAGCTTGCATGAACAGAAACA
ATTGTTTAACGACAAAACAAAAAGTCATAATGATTTGAAATAGATAAAGTTCAAATAAACATAAC
TATTTAAACTTATTCGGTAAACAATTTATGTTTTAAATCTCAAACTCATTAATTTTTAGAATACT
AATAAATTAGTATTATTTAACTTCAAATAAAATTATATGAAAAGAAACAAGTGTTTTATGACAAA
ACAAAAGATCATAACG
Found at i:24711519 original size:35 final size:34
Alignment explanation
Indices: 24711480--24711566 Score: 81
Period size: 35 Copynumber: 2.5 Consensus size: 34
24711470 ATTTAAAATG
* *
24711480 ATAATTATTTTTAAT-ATATATAATATATATTTATT
1 ATAATTATTTTTAATAATA-ATAATAT-TAATGATT
*
24711515 ATAATT-TTAATTAATAATAATAATATTAATGATT
1 ATAATTATT-TTTAATAATAATAATATTAATGATT
*
24711549 ATTAATAATTTTT-ATAAT
1 A-TAATTATTTTTAATAAT
24711567 TTGATAATTA
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
34 14 0.33
35 24 0.56
36 5 0.12
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (34 bp):
ATAATTATTTTTAATAATAATAATATTAATGATT
Found at i:24711554 original size:19 final size:19
Alignment explanation
Indices: 24711510--24711557 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
24711500 TAATATATAT
* *
24711510 TTATT-ATAATTTTAATTA
1 TTATTAATAATATTAATGA
* *
24711528 ATAATAATAATATTAATGA
1 TTATTAATAATATTAATGA
24711547 TTATTAATAAT
1 TTATTAATAAT
24711558 TTTTATAATT
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
18 3 0.13
19 20 0.87
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (19 bp):
TTATTAATAATATTAATGA
Found at i:24712384 original size:23 final size:23
Alignment explanation
Indices: 24712358--24712418 Score: 56
Period size: 22 Copynumber: 2.7 Consensus size: 23
24712348 TTAAATTATA
*
24712358 AATATAATTTATTATTTGTTAAT
1 AATATAATTTATTATTTATTAAT
*
24712381 AATA-AA-TTACTTATTTATTTAT
1 AATATAATTTA-TTATTTATTAAT
*
24712403 CA-ATAATATTATTATT
1 AATATAAT-TTATTATT
24712419 GATACTTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
21 4 0.13
22 15 0.48
23 9 0.29
24 3 0.10
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.54
Consensus pattern (23 bp):
AATATAATTTATTATTTATTAAT
Found at i:24712493 original size:22 final size:23
Alignment explanation
Indices: 24712468--24712551 Score: 77
Period size: 22 Copynumber: 3.7 Consensus size: 23
24712458 CTTAATTAGG
24712468 TTATAATTATTAATA-TATTTAA
1 TTATAATTATTAATACTATTTAA
*
24712490 TTATAATTAATTAATTATTATATCTAA
1 TTATAATT-ATTAA-TACTAT-T-TAA
* *
24712517 TAATAGTTATTAATACTA-TTAA
1 TTATAATTATTAATACTATTTAA
24712539 -TA-AATTATTAATA
1 TTATAATTATTAATA
24712552 TAAAAGGGCA
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
20 10 0.19
21 1 0.02
22 11 0.21
23 6 0.12
24 2 0.04
25 7 0.13
26 6 0.12
27 9 0.17
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.50
Consensus pattern (23 bp):
TTATAATTATTAATACTATTTAA
Found at i:24712548 original size:20 final size:20
Alignment explanation
Indices: 24712495--24712552 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
24712485 TTTAATTATA
24712495 ATTAATTAATTATT-ATATCT
1 ATTAA-TAATTATTAATATCT
* *
24712515 AATAATAGTTATTAATA-CT
1 ATTAATAATTATTAATATCT
24712534 ATTAATAAATTATTAATAT
1 ATTAAT-AATTATTAATAT
24712553 AAAAGGGCAC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (20 bp):
ATTAATAATTATTAATATCT
Found at i:24712747 original size:6 final size:6
Alignment explanation
Indices: 24712724--24712757 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
24712714 ATTCATAAAT
*
24712724 TTAATA TTAATTA ATAATA TTAATA TTAATA TTA
1 TTAATA TTAA-TA TTAATA TTAATA TTAATA TTA
24712758 TTTGGTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TTAATA
Found at i:24712773 original size:25 final size:25
Alignment explanation
Indices: 24712711--24712773 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
24712701 AATTAAAATC
24712711 AATATTCATAAAT-TTAATATTAATT
1 AATATT-ATAAATATTAATATTAATT
* * *
24712736 AATAATATTAATATTAATATTATTT
1 AATATTATAAATATTAATATTAATT
**
24712761 GGTATTATAAATA
1 AATATTATAAATA
24712774 AAATAATATT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
24 5 0.17
25 25 0.83
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.48
Consensus pattern (25 bp):
AATATTATAAATATTAATATTAATT
Found at i:24712866 original size:18 final size:19
Alignment explanation
Indices: 24712835--24712872 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
24712825 TCTAATTGTA
*
24712835 AATTGTTTATAAAAATTAT
1 AATTGTTTAAAAAAATTAT
24712854 AATT-TTTAAAAAAATTAT
1 AATTGTTTAAAAAAATTAT
24712872 A
1 A
24712873 TATCTATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (19 bp):
AATTGTTTAAAAAAATTAT
Found at i:24712957 original size:21 final size:22
Alignment explanation
Indices: 24712913--24712962 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 22
24712903 ATTAAATTTG
*
24712913 TTTAATATCTAAAATATTATAAA
1 TTTAATATATAAAATA-TATAAA
*
24712936 TTTAATATATAAACTA-ATAAA
1 TTTAATATATAAAATATATAAA
*
24712957 TATAAT
1 TTTAAT
24712963 CATAATGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 10 0.42
23 14 0.58
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (22 bp):
TTTAATATATAAAATATATAAA
Found at i:24713167 original size:21 final size:21
Alignment explanation
Indices: 24713135--24713181 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
24713125 AATAAATTAC
24713135 TATT-AATAAATAATAAT-ATT
1 TATTAAATAAATAA-AATAATT
*
24713155 TATTAAATTAATAAAATAATT
1 TATTAAATAAATAAAATAATT
*
24713176 CATTAA
1 TATTAA
24713182 TAGGAAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
TATTAAATAAATAAAATAATT
Found at i:24713232 original size:19 final size:20
Alignment explanation
Indices: 24713194--24713232 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
24713184 GGAAAATTAA
*
24713194 ATAATTTTAATTTTAATATT
1 ATAATTTTAATTATAATATT
*
24713214 ATAA-TTTAATTATATTATT
1 ATAATTTTAATTATAATATT
24713233 TAAATAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
ATAATTTTAATTATAATATT
Found at i:24713656 original size:179 final size:178
Alignment explanation
Indices: 24713248--24713938 Score: 509
Period size: 179 Copynumber: 3.9 Consensus size: 178
24713238 AAAATAATTT
* * * * * *
24713248 AAACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGTTTAAATGGC
1 AAACAATTGTTTTATGACTAAACAAAAGATCAAAATGATTTGAAATAGATAATTGTTCAAATAGT
* * * **
24713313 CATAATTATTTGAA-TTGATTC-GATAAACT-GATTTATGTTTTAAATCTCTAACTTAGCAATTT
66 CATAAATATTTGAACTTG-TTCAG-TAAA-TAGATTTAT-TTTT-AATTTCTTACTTAATAA-TT
* * * * * *
24713375 TTAT-AATATTAATAAAGTAATATTATTTTATTTCAGATAAGCTTTTCTGAACTG
125 TTATGAATATTAATAAATTAGTATTATTTTATTTGA-ATAAGCATGTATGAACTG
* *
24713429 AAACAATTGTTTTATGA-TAAA-ATATAAGATCATAACT-ATTTTAAATAGATAATTGTTCAAAT
1 AAACAATTGTTTTATGACTAAACA-A-AAGATCA-AAATGATTTGAAATAGATAATTGTTCAAAT
*
24713491 AGTCAAAAATATTTGAACTTGTTCAGTAAATAGATTT-TTTTCTAATTTCTTACTTAATAATTTT
63 AGTCATAAATATTTGAACTTGTTCAGTAAATAGATTTATTTT-TAATTTCTTACTTAATAATTTT
* * **
24713555 ATGAATGTTAATAAATTAGTATTATTTTATTTTGAATAATCATGTATGAGTTG
127 ATGAATATTAATAAATTAGTATTATTTTA-TTTGAATAAGCATGTATGAACTG
* * * *
24713608 AAGCAATTATTTTATGACTAAACAAAAGGTCAAAATGATTTGAAATAGATAATTGTTCTAATAGT
1 AAACAATTGTTTTATGACTAAACAAAAGATCAAAATGATTTGAAATAGATAATTGTTCAAATAGT
* * ** * * * * * *
24713673 CTTAACTATTTGAACTAATTCAGCAAACACATTTATTTTTTAAATCCTTACTTATTAATGTTTA-
66 CATAAATATTTGAACTTGTTCAGTAAATAGATTTA-TTTTTAATTTCTTACTTAATAAT-TTTAT
* * * * * *
24713737 GAATATTATTAATTTAGCAATATTTTACTCTGAATAAGCTTGT-TGAA-TAG
129 GAATATTAATAAATTAGTATTATTTTA-TTTGAATAAGCATGTATGAACT-G
* * * * * * ** * * *
24713787 AAATTAAATGTTTTAGGTCAAAAC-AAA-ATCATAACAATTAGAGATAGATAATTGTTTAAATAG
1 AAA-CAATTGTTTTATGACTAAACAAAAGATCAAAATGATTTGAAATAGATAATTGTTCAAATAG
* * * *
24713850 TCATAACTATTTGAACTGGTAT-AGTAAAAAGATTTAGTTTTTAAATCTCTTA-TTAAT--TTTT
65 TCATAAATATTTGAACTTGT-TCAGTAAATAGATTTA-TTTTT-AATTTCTTACTTAATAATTTT
* * * *
24713911 A-AAATAGTAACAAAATAGTATTATTTTA
127 ATGAATATTAATAAATTAGTATTATTTTA
24713939 CTATCAATAA
Statistics
Matches: 406, Mismatches: 85, Indels: 44
0.76 0.16 0.08
Matches are distributed among these distances:
175 23 0.06
176 1 0.00
178 75 0.18
179 141 0.35
180 80 0.20
181 80 0.20
182 6 0.01
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (178 bp):
AAACAATTGTTTTATGACTAAACAAAAGATCAAAATGATTTGAAATAGATAATTGTTCAAATAGT
CATAAATATTTGAACTTGTTCAGTAAATAGATTTATTTTTAATTTCTTACTTAATAATTTTATGA
ATATTAATAAATTAGTATTATTTTATTTGAATAAGCATGTATGAACTG
Found at i:24714427 original size:17 final size:17
Alignment explanation
Indices: 24714386--24714442 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
24714376 TAAGAATATA
* *
24714386 ATAATTTATCTCAATTAT
1 ATAATTTATC-AAATAAT
*
24714404 TTAATTTATCAAATAAT
1 ATAATTTATCAAATAAT
*
24714421 ATAATTTA-AATAATAAT
1 ATAATTTATCA-AATAAT
24714438 ATAAT
1 ATAAT
24714443 AATACTATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
16 1 0.03
17 23 0.70
18 9 0.27
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (17 bp):
ATAATTTATCAAATAAT
Found at i:24715043 original size:27 final size:26
Alignment explanation
Indices: 24715009--24715060 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
24714999 TAATTAATTA
24715009 TATTAATA-TAATATA-ATATATTATAT
1 TATTAATATTAA-ATACA-ATATTATAT
24715035 TATTAAATATTAAATACAATATTATA
1 TATT-AATATTAAATACAATATTATA
24715061 ATTTAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
26 4 0.17
27 15 0.65
28 4 0.17
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (26 bp):
TATTAATATTAAATACAATATTATAT
Found at i:24715095 original size:8 final size:8
Alignment explanation
Indices: 24715005--24715113 Score: 73
Period size: 8 Copynumber: 13.1 Consensus size: 8
24714995 TAATTAATTA
*
24715005 ATTATATT
1 ATTATAAT
*
24715013 AATATAAT
1 ATTATAAT
*
24715021 ATAAT-AT
1 ATTATAAT
*
24715028 ATTATATT
1 ATTATAAT
24715036 ATTA-AAT
1 ATTATAAT
24715043 ATTAAATACAAT
1 ATT--AT--AAT
24715055 ATTATAAT
1 ATTATAAT
*
24715063 -TTAATTAT
1 ATT-ATAAT
24715071 ATT-TAACT
1 ATTATAA-T
24715079 AATTAATAAT
1 -ATT-ATAAT
24715089 ATTATAAT
1 ATTATAAT
24715097 ATTATAAT
1 ATTATAAT
24715105 ATTATAAT
1 ATTATAAT
24715113 A
1 A
24715114 ATTGAATAAT
Statistics
Matches: 80, Mismatches: 9, Indels: 24
0.71 0.08 0.21
Matches are distributed among these distances:
7 15 0.19
8 44 0.55
9 9 0.11
10 3 0.04
11 3 0.04
12 6 0.08
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (8 bp):
ATTATAAT
Found at i:24715123 original size:61 final size:61
Alignment explanation
Indices: 24715002--24715133 Score: 139
Period size: 61 Copynumber: 2.1 Consensus size: 61
24714992 CTTTAATTAA
* *
24715002 TTAATTATATTAATATAATATAATATATTATATTATTAAATATTAAATACAATATTATAA-T
1 TTAATTATATTAATATAATATAATATATTATAATATTAAATATTAAATA-AATATAATAAGT
*
24715063 TTAATTATATTTAA-CTAAT-TAATAATATTATAATATTATAATATTATAAT-AAT-TGAATAAT
1 TTAATTATA-TTAATATAATATAAT-ATATTATAATATTA-AATATTA-AATAAATAT-AATAA-
24715124 GT
60 GT
24715126 TTAATTAT
1 TTAATTAT
24715134 TATGATATAA
Statistics
Matches: 61, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
60 5 0.08
61 33 0.54
62 11 0.18
63 12 0.20
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (61 bp):
TTAATTATATTAATATAATATAATATATTATAATATTAAATATTAAATAAATATAATAAGT
Found at i:24715475 original size:9 final size:10
Alignment explanation
Indices: 24715455--24715509 Score: 51
Period size: 10 Copynumber: 5.4 Consensus size: 10
24715445 ATAATCCATA
24715455 AATTATTAAT
1 AATTATTAAT
24715465 AATTA-TAAT
1 AATTATTAAT
24715474 AATTAATTAAT
1 AATT-ATTAAT
*
24715485 AACATT-TTATT
1 -A-ATTATTAAT
*
24715496 AAATATTAAT
1 AATTATTAAT
24715506 AATT
1 AATT
24715510 TAATTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
9 10 0.28
10 14 0.39
11 8 0.22
12 1 0.03
13 3 0.08
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (10 bp):
AATTATTAAT
Found at i:24715656 original size:22 final size:22
Alignment explanation
Indices: 24715631--24715678 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
24715621 AATATTTCAT
24715631 ATTAATTGTTAATA-TATATAAA
1 ATTAATT-TTAATATTATATAAA
*
24715653 ATT-A-TTTAATATTATATACA
1 ATTAATTTTAATATTATATAAA
24715673 ATTAAT
1 ATTAAT
24715679 ATATAATTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
19 6 0.27
20 11 0.50
21 2 0.09
22 3 0.14
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
ATTAATTTTAATATTATATAAA
Found at i:24715670 original size:20 final size:19
Alignment explanation
Indices: 24715639--24715676 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
24715629 ATATTAATTG
24715639 TTAATATATATAAAATTAT
1 TTAATATATATAAAATTAT
*
24715658 TTAATATTATATACAATTA
1 TTAATA-TATATAAAATTA
24715677 ATATATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
TTAATATATATAAAATTAT
Found at i:24715781 original size:16 final size:18
Alignment explanation
Indices: 24715760--24715792 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
24715750 TTATTTTATA
24715760 TTAATAA-A-TTATATTG
1 TTAATAATAGTTATATTG
24715776 TTAATAATAGTTATATT
1 TTAATAATAGTTATATT
24715793 TAATTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (18 bp):
TTAATAATAGTTATATTG
Done.