Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 250 of 402
Found at i:24715818 original size:38 final size:36
Alignment explanation
Indices: 24715776--24715860 Score: 91
Period size: 38 Copynumber: 2.2 Consensus size: 36
24715766 AATTATATTG
24715776 TTAATAATAGTTATATTTAATTATTAAATATATAAT-AT
1 TTAATAATAGTTA-ATTTAA-TATTAAATAT-TAATCAT
* * *
24715814 TTAATTATATATTTAATTTAATATTATATATTATTCAT
1 TTAA-TA-ATAGTTAATTTAATATTAAATATTAATCAT
24715852 TTAATAATA
1 TTAATAATA
24715861 AATAAATAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
36 3 0.07
37 5 0.12
38 19 0.46
39 8 0.20
40 6 0.15
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (36 bp):
TTAATAATAGTTAATTTAATATTAAATATTAATCAT
Found at i:24715820 original size:19 final size:19
Alignment explanation
Indices: 24715798--24715932 Score: 52
Period size: 19 Copynumber: 7.1 Consensus size: 19
24715788 ATATTTAATT
24715798 ATTAAATATATAATATTTA
1 ATTAAATATATAATATTTA
* * *
24715817 ATTATATATTTAAT-TTAA
1 ATTAAATATATAATATTTA
* *
24715835 TATTATATAT-TATTCATTTA
1 -ATTAAATATATAAT-ATTTA
*
24715855 ATAATAAATAAATAGATA-TTA
1 AT--TAAATATATA-ATATTTA
*
24715876 ATT-AATA-ATATTA-TT-
1 ATTAAATATATAATATTTA
*
24715891 ATTAAGTATA-AATATTATA
1 ATTAAATATATAATATT-TA
*
24715910 ATATGAATAATATTAATATTTA
1 AT-TAAAT-ATA-TAATATTTA
24715932 A
1 A
24715933 CATTAATTAT
Statistics
Matches: 87, Mismatches: 13, Indels: 29
0.67 0.10 0.22
Matches are distributed among these distances:
15 3 0.03
16 10 0.11
17 5 0.06
18 11 0.13
19 26 0.30
20 6 0.07
21 13 0.15
22 6 0.07
23 7 0.08
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (19 bp):
ATTAAATATATAATATTTA
Found at i:24715857 original size:21 final size:19
Alignment explanation
Indices: 24715790--24715845 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
24715780 TAATAGTTAT
* *
24715790 ATTTAATTATTAAATATATA
1 ATTTAA-TATTATATATTTA
*
24715810 ATATTTA-ATTATATATTTA
1 AT-TTAATATTATATATTTA
24715829 ATTTAATATTATATATT
1 ATTTAATATTATATATT
24715846 ATTCATTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
18 3 0.10
19 22 0.73
20 2 0.07
21 3 0.10
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
ATTTAATATTATATATTTA
Found at i:24716341 original size:14 final size:14
Alignment explanation
Indices: 24716324--24716353 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
24716314 ATTATAATAT
24716324 TTTAAATATATTAA
1 TTTAAATATATTAA
24716338 TTTAAATATATTAA
1 TTTAAATATATTAA
24716352 TT
1 TT
24716354 ATTAGATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TTTAAATATATTAA
Found at i:24716362 original size:12 final size:12
Alignment explanation
Indices: 24716347--24716384 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
24716337 ATTTAAATAT
24716347 ATTAATTATTAG
1 ATTAATTATTAG
* *
24716359 ATTAATTATAAA
1 ATTAATTATTAG
24716371 ATTAATTATT-G
1 ATTAATTATTAG
24716382 ATT
1 ATT
24716385 TTATATTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
11 3 0.14
12 19 0.86
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (12 bp):
ATTAATTATTAG
Found at i:24716416 original size:13 final size:13
Alignment explanation
Indices: 24716372--24716418 Score: 60
Period size: 13 Copynumber: 3.5 Consensus size: 13
24716362 AATTATAAAA
24716372 TTAATTATTGATT
1 TTAATTATTGATT
*
24716385 TTATATTATTTATT
1 TTA-ATTATTGATT
24716399 TTAATT-TTGATAT
1 TTAATTATTGAT-T
24716412 TTAATTA
1 TTAATTA
24716419 ATATTTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 4 0.14
13 13 0.45
14 12 0.41
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTAATTATTGATT
Found at i:24716603 original size:12 final size:12
Alignment explanation
Indices: 24716586--24716615 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
24716576 AATAATTAAC
24716586 AATATTATAATA
1 AATATTATAATA
24716598 AATATTATAATA
1 AATATTATAATA
24716610 ATATAT
1 A-ATAT
24716616 ATAGATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
AATATTATAATA
Found at i:24717203 original size:23 final size:21
Alignment explanation
Indices: 24717168--24717236 Score: 54
Period size: 23 Copynumber: 3.1 Consensus size: 21
24717158 TATTAATTCG
*
24717168 ATAA-TATTGATTTCATTAATA
1 ATAATTATTTATTT-ATTAATA
24717189 ATAATT-TTATAATTTATT-ATAA
1 ATAATTATT-T-ATTTATTAAT-A
24717211 ATTAATTATTTATTTAATTAATA
1 A-TAATTATTTATTT-ATTAATA
24717234 ATA
1 ATA
24717237 GATCTACTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 15
0.71 0.02 0.27
Matches are distributed among these distances:
21 8 0.21
22 12 0.31
23 15 0.38
24 4 0.10
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (21 bp):
ATAATTATTTATTTATTAATA
Found at i:24717210 original size:18 final size:18
Alignment explanation
Indices: 24717189--24717235 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
24717179 TTCATTAATA
*
24717189 ATAATTTTATAATTTATT
1 ATAATTTAATAATTTATT
* *
24717207 ATAAATTAATTATTTATT
1 ATAATTTAATAATTTATT
24717225 -TAA-TTAATAAT
1 ATAATTTAATAAT
24717236 AGATCTACTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 7 0.28
17 3 0.12
18 15 0.60
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATAATTTAATAATTTATT
Found at i:24717421 original size:22 final size:22
Alignment explanation
Indices: 24717396--24717455 Score: 59
Period size: 25 Copynumber: 2.5 Consensus size: 22
24717386 TATATATAAG
*
24717396 AATTAATTAAAT-TTATTATACT
1 AATTAATTAAATATAATTA-ACT
24717418 AATTAAGTTAATATATAATTAACT
1 AATTAA-TTAA-ATATAATTAACT
24717442 AATTATAATTAAAT
1 AA-T-TAATTAAAT
24717456 GAATTATCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
22 6 0.19
23 4 0.12
24 9 0.28
25 10 0.31
26 3 0.09
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (22 bp):
AATTAATTAAATATAATTAACT
Found at i:24717450 original size:14 final size:15
Alignment explanation
Indices: 24717412--24717453 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 15
24717402 TTAAATTTAT
*
24717412 TATACTAATTAAGTTAA
1 TATA-TAATTAA-CTAA
24717429 TATATAATTAACTAA
1 TATATAATTAACTAA
24717444 T-TATAATTAA
1 TATATAATTAA
24717454 ATGAATTATC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 9 0.38
15 4 0.17
16 7 0.29
17 4 0.17
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (15 bp):
TATATAATTAACTAA
Found at i:24717635 original size:16 final size:16
Alignment explanation
Indices: 24717595--24717636 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
24717585 CAATTTAATT
*
24717595 ATTTTAAATTAATAAA
1 ATTTTAATTTAATAAA
*
24717611 ATTAATAATTTAATAAA
1 ATT-TTAATTTAATAAA
24717628 ATTTTAATT
1 ATTTTAATT
24717637 AAATTTATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATTTTAATTTAATAAA
Found at i:24717763 original size:21 final size:21
Alignment explanation
Indices: 24717738--24717787 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
24717728 AATATTTATT
24717738 ATAATT-TCTATTAT-AATAATA
1 ATAATTAT-TATTATCAAT-ATA
*
24717759 ATAATTATTATTATCAATATT
1 ATAATTATTATTATCAATATA
24717780 ATAATTAT
1 ATAATTAT
24717788 AACAATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (21 bp):
ATAATTATTATTATCAATATA
Found at i:24717879 original size:16 final size:15
Alignment explanation
Indices: 24717840--24717899 Score: 59
Period size: 16 Copynumber: 3.7 Consensus size: 15
24717830 CTTATATGAT
24717840 ATTATATTATTAACTTGA
1 ATTATATTATT-A-TT-A
24717858 ATTATATTATTATTA
1 ATTATATTATTATTA
*
24717873 CATTATATTAATATT-
1 -ATTATATTATTATTA
24717888 ATTATTATTATT
1 ATTA-TATTATT
24717900 TATACAATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
14 4 0.11
15 7 0.18
16 15 0.39
17 1 0.03
18 11 0.29
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (15 bp):
ATTATATTATTATTA
Found at i:24718061 original size:15 final size:16
Alignment explanation
Indices: 24718033--24718072 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
24718023 TATGTTAAAG
24718033 TTAAT-ATTATTTG-A
1 TTAATAATTATTTGAA
24718047 TATAATAATTA-TTGAA
1 T-TAATAATTATTTGAA
24718063 TTAATAATTA
1 TTAATAATTA
24718073 AAGTATTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 1 0.04
15 16 0.70
16 6 0.26
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (16 bp):
TTAATAATTATTTGAA
Found at i:24719652 original size:16 final size:17
Alignment explanation
Indices: 24719631--24719663 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
24719621 ATAGTCATGA
24719631 CTATTT-AAATAATTAT
1 CTATTTCAAATAATTAT
*
24719647 CTATTTCAAATCATTAT
1 CTATTTCAAATAATTAT
24719664 AACTTTTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
CTATTTCAAATAATTAT
Found at i:24719666 original size:181 final size:182
Alignment explanation
Indices: 24719330--24721275 Score: 839
Period size: 181 Copynumber: 10.7 Consensus size: 182
24719320 TCTAAATGAT
* ** * ***
24719330 TTTTCTATTCATAAAAGCTTATTTTAATAAAATAATACAAATTTATTCAATATCAAGAT-AATTA
1 TTTTCTATTCATACAAGCTTATTCGAATAAAATAATACTAATTTATT-AATATTTTGATAAATTA
* * *
24719394 ATAAGTAAAGATTT-AAAATATAAATCTATGTACCGAACAAGTTCAAATAGTTATGACTATTTGA
65 ATAAGTAAAGATTTAAAAAAATAAATATATTTACCGAACAAGTTCAAATAGTTATGACTATTT-A
* * ** *
24719458 ATAATTATTTATTTCAAATTGTTATAACTTTTTATTTTGTTCATAAAACAATTG
129 AAAATTATCTATTTCAAATCATTATAACCTTTTATTTTGTTCATAAAACAATTG
* * * *
24719512 TTTTCTGTTCATATAAGATTATTCG-AT-AAATAATATTAATTTATTAATATTTTGATAAA-TAA
1 TTTTCTATTCATACAAGCTTATTCGAATAAAATAATACTAATTTATTAATATTTTGATAAATTAA
* *
24719574 TAAGTAAAAGATTTAAAAAAATAAATATATTTACCGAACAAGTTTAAATAGTCATGACTATTTAA
66 TAAGT-AAAGATTTAAAAAAATAAATATATTTACCGAACAAGTTCAAATAGTTATGACTATTTAA
* *
24719639 ATAATTATCTATTTCAAATCATTATAA-CTTTTGTTTTGTAC-TAAAACAATTG
130 A-AATTATCTATTTCAAATCATTATAACCTTTTATTTTGTTCATAAAACAATTG
* * * *
24719691 --TTCAATTCATATAAGCTTATTTGAAATAAAATACTACTAATTTATTAATATTTTGA-AAATTA
1 TTTTCTATTCATACAAGCTTATTCG-AATAAAATAATACTAATTTATTAATATTTTGATAAATTA
** * * * * *
24719753 A-AGAGTAAAGAACTAAAAAAA-GAATCTATTTACCCCAACAAGTGCAAATAGTTATGAGTATAT
65 ATA-AGTAAAGATTTAAAAAAATAAATATATTTA-CCGAACAAGTTCAAATAGTTATGACTAT-T
* * * *
24719816 GAAAAATTATATATTTCAAAACATTATGACCTTTTATTTTG-TCATAAAACAATTG
127 TAAAAATTATCTATTTCAAATCATTATAACCTTTTATTTTGTTCATAAAACAATTG
* * * * ** *
24719871 GTTT-TGTTCATGCAAGCTTATTTCG-ATAAAATAATA-TAAATTATTAATA-TTCCAAAAATTA
1 TTTTCTATTCATACAAGCTTA-TTCGAATAAAATAATACTAATTTATTAATATTTTGATAAATTA
* * * * *
24719932 ATAAGTAAAAATTTTTTAAAAAAT--TTAT-TTTA-TGAACACGTTCAAATAGTTATGACTATTT
65 ATAAGTAAAGA--TTTAAAAAAATAAATATATTTACCGAACAAGTTCAAATAGTTATGACTATTT
* * * *
24719993 GAGAAATTATCTATTTCAAATCATTACAACCATTTCTTTT-TTCAT-AAACTAA-TG
128 -AAAAATTATCTATTTCAAATCATTATAACCTTTTATTTTGTTCATAAAAC-AATTG
* * * * ** *
24720047 TGTTCTATTCAAACAAGCTTAATCAGAAT-AAATAATACTAATTTATTAATA-CTCCA-AATTTA
1 TTTTCTATTCATACAAGCTTATTC-GAATAAAATAATACTAATTTATTAATATTTTGATAAATTA
* * * * *
24720109 ATAATTAACAATATTTTAAAAAAATAAATTTGTTTACCGAAACAAG-TCAACATAGTTATAACTA
65 ATAAGT-A-AAGA-TTTAAAAAAATAAATATATTTACCG-AACAAGTTCAA-ATAGTTATGACTA
* * * * * * * *
24720173 TTTGAACATTTACTATATTTTAAGTCGTTGTGAA-CTTTT-TTTTGGTCATAAAACAATTG
125 TTT-AAAAATTA-TCTATTTCAAATCATTAT-AACCTTTTATTTTGTTCATAAAACAATTG
** * * * *
24720232 -TTTCTATTCCATACAATTTTTATTCAAAACAAAATAATACTAATTT-TT-TTATTATAT-AAAA
1 TTTTCTATT-CATACAA-GCTTATTC-GAATAAAATAATACTAATTTATTAATATT-T-TGATAA
* * * * * *
24720293 ATTTAACAAGTTGAAGATTTAAAAAAATTAATA-AGTTTATCGAACAAGTATTAAAATAGTCATG
61 A-TTAATAAG-TAAAGATTTAAAAAAATAAATATA-TTTACCGAACAAG--TTCAAATAGTTAT-
* * * ** * * * * * * *
24720357 GTCCATGTGAACTATCATATATTTTAAATCGTGATACTGACATTTTGTTTTG-TCATAACAACAC
120 GACTAT-TTAAAAATTATCTATTTCAAATCAT--TA-TAACCTTTTATTTTGTTCATAA-AACA-
24720421 ATT-
179 ATTG
* ** * *
24720424 ATTTCTATTCATACCAAAATTATTTTC-AA-ACAAACAA-A-TAA--TA-TAA-A-TTT-AT-AC
1 TTTTCTATTCATA-CAAGCTTA--TTCGAATA-AAATAATACTAATTTATTAATATTTTGATAAA
* * ****** * *** ** * * * *
24720478 CT-AT-A-TCAAAAATTTAATGCCCCACAT-TAAAAACTAAATCCAGTTTAAATGGTGATGAACG
62 TTAATAAGT-AAAGATTTAAAAAAATAAATATATTTACCGAA-CAAGTTCAAATAGTTATG-AC-
* *** * * * *
24720539 TATTTTGAACAATTATCTATCGAAAATCGTGTATTGA--TTTTTTTTTG-TCCTAAAACAATTG
123 TA-TTT-AAAAATTATCTATTTCAAATCAT-TA-TAACCTTTTATTTTGTTCATAAAACAATTG
* * * * * * * *
24720600 TTTTCTATTAATACCAAGTTTATTTAGAAGTAAAATTATTATTAAATTAATAATA--TT-CTAAA
1 TTTTCTATTCATA-CAAGCTTA-TTCGAA-TAAAA-TAATACTAATTTATTAATATTTTGATAAA
* * ** * *
24720662 TTAATAAG----GATTTAAAAAAATAAATGTGTTTGTCGAACCAA-TGCAAATAGTTAAGACTA-
62 TTAATAAGTAAAGATTTAAAAAAATAAATATATTTACCGAA-CAAGTTCAAATAGTTATGACTAT
* * * * * *
24720721 TTAGAATAATTATCTATTTCAAATCATTCTAGCCTTTTGTTTAG-TAATAAAATAATTG
126 TTA-AA-AATTATCTATTTCAAATCATTATAACCTTTTATTTTGTTCATAAAACAATTG
* * * * * *
24720779 -TTTCTATTTATACATGCTTATTCGGATTAAAATAATACAAATTTATTAATATTTCGA-CAATTA
1 TTTTCTATTCATACAAGCTTATTC-GAATAAAATAATACTAATTTATTAATATTTTGATAAATTA
* * * * * * * *** *
24720842 ATAAGTAAAAAATTT-TAAAAATAAATATGTTTACTGAACTAGATCAAACAACCAAGACTATTTG
65 ATAAGT-AAAGATTTAAAAAAATAAATATATTTACCGAACAAGTTCAAATAGTTATGACTATTT-
* * * *
24720906 AATAATTATCTATTTCAAATCATTATGAA-CTTTTGTTTTG-TCATAAAAGAACTG
128 AAAAATTATCTATTTCAAATCATTAT-AACCTTTTATTTTGTTCATAAAACAATTG
* * * * ** *
24720960 -CTTC-AGTTCATATAAGTTTATAT-GAAATAAAATAATACCAATTTATTAATA-TTCCAAAAAT
1 TTTTCTA-TTCATACAAGCTTAT-TCG-AATAAAATAATACTAATTTATTAATATTTTGATAAAT
* * * * * * * *
24721021 TAATAATTGAGAGATTT-AAAAAATGAATCTATTTATCGAACAAGTTTAAATAATTATGATTATT
63 TAATAAGT-AAAGATTTAAAAAAATAAATATATTTACCGAACAAGTTCAAATAGTTATGACTATT
* * *** * * * *
24721085 TGAATAATTATCTATTTGAAATTGCTATAACCTTTTGTTTT-ATCATAAAATAATTT
127 T-AAAAATTATCTATTTCAAATCATTATAACCTTTTATTTTGTTCATAAAACAATTG
* * * * ** *
24721141 TTTTCT-GTCTATACAAGCTTATTTTGAATAAAATAATACAAATTTATTACTATTAAGA-CAATT
1 TTTTCTATTC-ATACAAGCTTA-TTCGAATAAAATAATACTAATTTATTAATATTTTGATAAATT
* * * *
24721204 ATTAAGTAAAAGATTT-AAAAAATAAATCTATTTATCGAACAAGTTCAAATCA-TTATGACCATT
64 AATAAGT-AAAGATTTAAAAAAATAAATATATTTACCGAACAAGTTCAAAT-AGTTATGACTATT
24721267 TAAACAATT
127 TAAA-AATT
24721276 GTTTATATGA
Statistics
Matches: 1336, Mismatches: 304, Indels: 248
0.71 0.16 0.13
Matches are distributed among these distances:
175 20 0.01
176 42 0.03
177 150 0.11
178 70 0.05
179 172 0.13
180 158 0.12
181 302 0.23
182 159 0.12
183 48 0.04
184 33 0.02
185 20 0.01
186 18 0.01
187 38 0.03
188 29 0.02
189 17 0.01
190 7 0.01
191 13 0.01
192 23 0.02
193 14 0.01
194 3 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (182 bp):
TTTTCTATTCATACAAGCTTATTCGAATAAAATAATACTAATTTATTAATATTTTGATAAATTAA
TAAGTAAAGATTTAAAAAAATAAATATATTTACCGAACAAGTTCAAATAGTTATGACTATTTAAA
AATTATCTATTTCAAATCATTATAACCTTTTATTTTGTTCATAAAACAATTG
Found at i:24719902 original size:180 final size:176
Alignment explanation
Indices: 24719337--24720231 Score: 670
Period size: 179 Copynumber: 5.0 Consensus size: 176
24719327 GATTTTTCTA
* ** * *** *
24719337 TTCATAAAAGCTTATTTTAATAAAATAATACAAATTTATTCAATATCAAGATAATTAATAAGTAA
1 TTCATATAAGCTTATTTCGATAAAATAATACTAATTTATT-AATATTTTGAAAATTAATAAGTAA
* * * *
24719402 AGATTTAAAATATAAATCTATGTACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATT
65 AGATTTAAAA-AAAAATCTATTTACCGAACAAGTTCAAATAGTTATGACTA-TTGAAAAATTATA
** * *
24719467 TATTTCAAATTGTTATAACTTTTTATTTTGTTCATAAAACAATTGTTTTCTG
128 TATTTCAAATCATTAT-ACCTTTTATTTTG-TCATAAAACAATTGGTTT-TG
* *
24719519 TTCATATAAGATTA-TTCGAT-AAATAATATTAATTTATTAATATTTTGATAAA-TAATAAGTAA
1 TTCATATAAGCTTATTTCGATAAAATAATACTAATTTATTAATATTTTGA-AAATTAATAAGT-A
* * * *
24719581 AAGATTTAAAAAAATAAATATATTTACCGAACAAGTTTAAATAGTCATGACTATTTAAATAATTA
64 AAGATTT-AAAAAA-AAATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTGAAA-AATTA
* * * ***
24719646 TCTATTTCAAATCATTATAACTTTTGTTTTGT-ACTAAAACAATT-GTTCAA
126 TATATTTCAAATCATTATACCTTTTATTTTGTCA-TAAAACAATTGGTTTTG
*
24719696 TTCATATAAGCTTATTT-GAAATAAAATACTACTAATTTATTAATATTTTGAAAATTAA-AGAGT
1 TTCATATAAGCTTATTTCG--ATAAAATAATACTAATTTATTAATATTTTGAAAATTAATA-AGT
** * * *
24719759 AAAGAACTAAAAAAAGAATCTATTTACCCCAACAAGTGCAAATAGTTATGAGTATATGAAAAATT
63 AAAGATTTAAAAAAA-AATCTATTTA-CCGAACAAGTTCAAATAGTTATGACTAT-TGAAAAATT
*
24719824 ATATATTTCAAAACATTATGACCTTTTATTTTGTCATAAAACAATTGGTTTTG
125 ATATATTTCAAATCATTAT-ACCTTTTATTTTGTCATAAAACAATTGGTTTTG
** * ***
24719877 TTCATGCAAGCTTATTTCGATAAAATAATA-TAAATTATTAATATTCCAAAAATTAATAAGTAAA
1 TTCATATAAGCTTATTTCGATAAAATAATACTAATTTATTAATATTTTGAAAATTAATAAGTAAA
* *** * * * * *
24719941 AATTTTTTAAAAAATTTATTTTA-TGAACACGTTCAAATAGTTATGACTATTTGAGAAATTATCT
66 GATTTAAAAAAAAATCTA-TTTACCGAACAAGTTCAAATAGTTATGACTA-TTGAAAAATTATAT
* * * * * *
24720005 ATTTCAAATCATTACAACCATTTCTTTTTTCAT-AAACTAA-TGTGTTCTA
129 ATTTCAAATCATTA-TACCTTTTATTTTGTCATAAAAC-AATTG-GTTTTG
* * * * ** * *
24720054 TTCAAACAAGCTTA-ATCAGA-ATAAATAATACTAATTTATTAATA-CTCCAAATTTAATAATTA
1 TTCATATAAGCTTATTTC-GATA-AAATAATACTAATTTATTAATATTTTGAAAATTAATAAGT-
* * * * *
24720116 ACAATATTTTAAAAAAATAAATTTGTTTACCGAAACAAG-TCAACATAGTTATAACTATTTGAAC
63 A-AAGA-TTT-AAAAAA-AAATCTATTTACCG-AACAAGTTCAA-ATAGTTATGACTA-TTGAAA
* * * * * *
24720180 ATTTACTATATTTTAAGTCGTTGTGAACTTTT-TTTTGGTCATAAAACAATTG
121 AATTA-TATATTTCAAATCATTAT-ACCTTTTATTTT-GTCATAAAACAATTG
24720232 TTTCTATTCC
Statistics
Matches: 569, Mismatches: 103, Indels: 79
0.76 0.14 0.11
Matches are distributed among these distances:
176 9 0.02
177 114 0.20
178 39 0.07
179 123 0.22
180 113 0.20
181 88 0.15
182 24 0.04
183 30 0.05
184 23 0.04
185 6 0.01
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.40
Consensus pattern (176 bp):
TTCATATAAGCTTATTTCGATAAAATAATACTAATTTATTAATATTTTGAAAATTAATAAGTAAA
GATTTAAAAAAAAATCTATTTACCGAACAAGTTCAAATAGTTATGACTATTGAAAAATTATATAT
TTCAAATCATTATACCTTTTATTTTGTCATAAAACAATTGGTTTTG
Found at i:24720155 original size:360 final size:356
Alignment explanation
Indices: 24719355--24720247 Score: 841
Period size: 360 Copynumber: 2.5 Consensus size: 356
24719345 AGCTTATTTT
* *** * ** * *
24719355 AATAAAATAATACAAATTTATTCAATATCAAGATAATTAATA-AGTAAAGATTTAAAATATAAAT
1 AATAAAATAATACTAATTTATT-AATATCTCCAAAATTAA-AGAGTAAAGAACTAAAAAAAAAAT
* * * * *
24719419 CTATGTACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTTCAAATTGTTATA
64 CTATTTACCGAACAAG-TCAAATAGTTATGACTATTTGAAAAATTATATATTTCAAATCGTTATG
* * *
24719484 ACTTTTTATTTTGTTCATAAAACAATTGTTTTCTGTTCATATAAGATTATTCGATAAATAATATT
128 ACCTTTTATTTTG-TCATAAAACAATTGGTTTCTGTTCATACAAGATTATTCGATAAATAATATT
* ** *
24719549 AATTTATTAATATTTTGATAAATAATAAGTAAAAGATTTAAAAAAATAAATATATTTACCGAACA
192 AAATTATTAATATTTCCAAAAATAATAAGTAAAAGATTTAAAAAAAT-AATATATTTACCGAACA
* * * *
24719614 AGTTTAAATAGTCATGACTATTTAAATAATTATCTATTTCAAATCATTATAACTTTTGTTTTGTA
256 AGTTCAAATAGTCATGACTATTTAAATAATTATCTATTTCAAATCATTACAACATTTCTTTTGTA
* * **
24719679 CTAAAACAATTGTTCAATTCATATAAGCTTATTTGA
321 CTAAAACAATTGTTCAATTCAAACAAGCTTATCAGA
* * ** *
24719715 AATAAAATACTACTAATTTATTAATATTTTGAAAATTAAAGAGTAAAGAACTAAAAAAAGAATCT
1 AATAAAATAATACTAATTTATTAATATCTCCAAAATTAAAGAGTAAAGAACTAAAAAAAAAATCT
* * * * *
24719780 ATTTACCCCAACAAGTGCAAATAGTTATGAGTATATGAAAAATTATATATTTCAAAACATTATGA
66 ATTTA-CCGAACAAGT-CAAATAGTTATGACTATTTGAAAAATTATATATTTCAAATCGTTATGA
* *
24719845 CCTTTTATTTTGTCATAAAACAATTGGTTT-TGTTCATGCAAGCTTATTTCGATAAAATAATA-T
129 CCTTTTATTTTGTCATAAAACAATTGGTTTCTGTTCATACAAGATTA-TTCGAT-AAATAATATT
* * *
24719908 AAATTATTAATA-TTCCAAAAATTAATAAGTAAAA-ATTTTTTAAAAAAT-TTAT-TTTA-TGAA
192 AAATTATTAATATTTCCAAAAA-TAATAAGTAAAAGA--TTTAAAAAAATAATATATTTACCGAA
* * *
24719968 CACGTTCAAATAGTTATGACTATTTGAGA-AATTATCTATTTCAAATCATTACAACCATTTCTTT
254 CAAGTTCAAATAGTCATGACTATTT-AAATAATTATCTATTTCAAATCATTACAA-CATTTCTTT
* *
24720032 T-TTC-ATAAACTAATGTGTTCTATTCAAACAAGCTTAATCAG-
317 TGTACTA-AAAC-AAT-TGTTCAATTCAAACAAGCTT-ATCAGA
* * *
24720073 AAT-AAATAATACTAATTTATTAATA-CTCCAAATTTAATA-ATTAACA-ATATTTTAAAAAAAT
1 AATAAAATAATACTAATTTATTAATATCTCCAAAATTAA-AGAGTAA-AGA-A--CTAAAAAAA-
* * * * * * *
24720134 AAATTTGTTTACCGAAACAAGTCAACATAGTTATAACTATTTGAACATTTACTATATTTTAAGTC
60 AAATCTATTTACCG-AACAAGTCAA-ATAGTTATGACTATTTGAAAAATTA-TATATTTCAAATC
* * *
24720199 GTTGTGAACTTTT-TTTTGGTCATAAAACAATT-GTTTCTATTCCATACAA
122 GTTATGACCTTTTATTTT-GTCATAAAACAATTGGTTTCTGTT-CATACAA
24720248 TTTTTATTCA
Statistics
Matches: 437, Mismatches: 70, Indels: 50
0.78 0.13 0.09
Matches are distributed among these distances:
355 1 0.00
356 68 0.16
357 41 0.09
358 44 0.10
359 100 0.23
360 140 0.32
361 37 0.08
362 6 0.01
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.40
Consensus pattern (356 bp):
AATAAAATAATACTAATTTATTAATATCTCCAAAATTAAAGAGTAAAGAACTAAAAAAAAAATCT
ATTTACCGAACAAGTCAAATAGTTATGACTATTTGAAAAATTATATATTTCAAATCGTTATGACC
TTTTATTTTGTCATAAAACAATTGGTTTCTGTTCATACAAGATTATTCGATAAATAATATTAAAT
TATTAATATTTCCAAAAATAATAAGTAAAAGATTTAAAAAAATAATATATTTACCGAACAAGTTC
AAATAGTCATGACTATTTAAATAATTATCTATTTCAAATCATTACAACATTTCTTTTGTACTAAA
ACAATTGTTCAATTCAAACAAGCTTATCAGA
Found at i:24721358 original size:16 final size:18
Alignment explanation
Indices: 24721339--24721371 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
24721329 AATTAACAAG
24721339 TAAA-ATATTTA-AAAAA
1 TAAATATATTTACAAAAA
24721355 TAAATATATTTACAAAA
1 TAAATATATTTACAAAA
24721372 CAAGTTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 7 0.47
18 4 0.27
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAATATATTTACAAAAA
Found at i:24721391 original size:129 final size:128
Alignment explanation
Indices: 24721163--24721396 Score: 310
Period size: 129 Copynumber: 1.8 Consensus size: 128
24721153 ACAAGCTTAT
* **
24721163 TTTGAATAAAATAATACAAATTTATTACTATTAAGACAATTATTAAGTAAAAGATTTAAAAAATA
1 TTTGAATAAAATAATACAAATTTATTAATATTAAGACAATTAACAAGTAAAAGATTTAAAAAATA
* * *
24721228 AATCTATTTATCGAACAAGTTCAAATCATTATGACCATTTAAACAATTGTTTATATGAGATTA
66 AATATATTTATCAAACAAGTTCAAATCATCATGACCATTTAAACAATTGTTTATATGAGATTA
** ** *
24721291 TTTGAATTAAAATAATATTAATTTATTAATATTTTGACAATTAACAAGTAAAATATTTAAAAAAT
1 TTTGAA-TAAAATAATACAAATTTATTAATATTAAGACAATTAACAAGTAAAAGATTTAAAAAAT
* *
24721356 AAATATATTTA-CAAAACAAGTTGAAAT-AGTCATGACTATTT
65 AAATATATTTATC-AAACAAGTTCAAATCA-TCATGACCATTT
24721397 GAATAATTAA
Statistics
Matches: 90, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
128 8 0.09
129 82 0.91
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (128 bp):
TTTGAATAAAATAATACAAATTTATTAATATTAAGACAATTAACAAGTAAAAGATTTAAAAAATA
AATATATTTATCAAACAAGTTCAAATCATCATGACCATTTAAACAATTGTTTATATGAGATTA
Found at i:24721583 original size:181 final size:177
Alignment explanation
Indices: 24721288--24721959 Score: 551
Period size: 181 Copynumber: 3.7 Consensus size: 177
24721278 TTATATGAGA
* * * * * * * *
24721288 TTATTTGAATTAAAATAATATTAATTTATTAATATTTTGACAATTAACAAGTAA-AATATTTAAA
1 TTATTAGAAATAAAATAATA-TAATTTATTAATATTCTAAAAATTAA-TAGTAAGAAAATTAAAA
* * *
24721352 AAATAAATATATT-TACAAAACAAGTTGAAATAGTCATGACTATTTGAATAATTAATTA-TTCAA
64 AAATAAATATATTCT-CCAAACAAGTTCAAATAGTTATGACTA-TTGAATAATT-ATTATTTCAA
* *
24721415 ATCATTATGACCTTTTATTTTGTAATAAAACAATTGTTTCAATTCAAATAAGC
126 ATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAATTCAAA-AAGC
*
24721468 TTATTAGAAATAAAATAATACTAATTTATTAATGTTCTAAAAATTAATGAGTAAGAAAATGTAAA
1 TTATTAGAAATAAAATAATA-TAATTTATTAATATTCTAAAAATTAAT-AGTAAGAAAAT-TAAA
* * * *
24721533 AAAAT-AATCTGTTCTCCAAACATGTTCAAATAATTATGACTATCTGAATAATTATTATTTCAAA
63 AAAATAAATATATTCTCCAAACAAGTTCAAATAGTTATGACTAT-TGAATAATTATTATTTCAAA
* * * * * *
24721597 ACATTATAACCTTTTGTTTTGCCATAAAACAATTGGTTCCATTCATACAAGC
127 TCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAATTCA-AAAAGC
* * * * *
24721649 TTATTTTG-AATTAAATAATATAAATTTATTAATATT-TCAAAATT--TAATAAGTAAAATTTAA
1 TTA-TTAGAAATAAAATAATAT-AATTTATTAATATTCTAAAAATTAATAGTAAG-AAAATTAAA
* ** * * *
24721710 AAAATAAATATATTTTCTGAACACGTTCAAATAGTTATGACTAGTTGAACAATTATCTATTTTAA
63 AAAATAAATATATTCTCCAAACAAGTTCAAATAGTTATGACTA-TTGAATAATTAT-TATTTCAA
* ** *
24721775 ATCATTA-GAACCTTTTGTTTTGTCATAAACCAATTGTTTCTGTTCATAAAGGC
126 ATCATTATG-ACCTTTTGTTTTGTCATAAAACAATTGTTTCAATTCA-AAAAGC
* * * * *
24721828 TTATTCGAAA-AGAAAGTAATATTAATTT-TTAAAATTTTCAAAAATTAATAAGTAA-AAGATTT
1 TTATTAGAAATA-AAA-TAATA-TAATTTATTAATATTCT-AAAAATTAAT-AGTAAGAAAATTA
* * ** ** **
24721890 AAAAAATAAATGTATT-TGTCAAATGAGTTCAAATAGTTAAAACTATTAGACCAATTATCTATTT
61 AAAAAATAAATATATTCT-CCAAACAAGTTCAAATAGTTATGACTATT-GAATAATTAT-TATTT
24721954 CAAATC
123 CAAATC
24721960 GTTCTCTTCA
Statistics
Matches: 401, Mismatches: 66, Indels: 48
0.78 0.13 0.09
Matches are distributed among these distances:
177 13 0.03
178 49 0.12
179 66 0.16
180 69 0.17
181 126 0.31
182 73 0.18
183 1 0.00
184 4 0.01
ACGTcount: A:0.44, C:0.09, G:0.08, T:0.39
Consensus pattern (177 bp):
TTATTAGAAATAAAATAATATAATTTATTAATATTCTAAAAATTAATAGTAAGAAAATTAAAAAA
ATAAATATATTCTCCAAACAAGTTCAAATAGTTATGACTATTGAATAATTATTATTTCAAATCAT
TATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAATTCAAAAAGC
Found at i:24722255 original size:46 final size:46
Alignment explanation
Indices: 24722202--24722297 Score: 147
Period size: 46 Copynumber: 2.1 Consensus size: 46
24722192 TTAGAAATTG
* * * *
24722202 ATAAGTTGATATTTAAGAAATAATTTAGTTTATCTAATCGGTTCAA
1 ATAAGTTGAGATTTAAAAAATAAGTTAGTTTATCGAATCGGTTCAA
*
24722248 ATAAGTTGAGATTTAAAAAATAAGTTAGTTTATCGAATTGGTTCAA
1 ATAAGTTGAGATTTAAAAAATAAGTTAGTTTATCGAATCGGTTCAA
24722294 ATAA
1 ATAA
24722298 TTATGGCCAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.42, C:0.05, G:0.15, T:0.39
Consensus pattern (46 bp):
ATAAGTTGAGATTTAAAAAATAAGTTAGTTTATCGAATCGGTTCAA
Found at i:24723077 original size:181 final size:181
Alignment explanation
Indices: 24722319--24724203 Score: 1485
Period size: 181 Copynumber: 10.5 Consensus size: 181
24722309 AAAACATTTT
* * * * * *
24722319 TCTATTTCAAATTGTTATAAAACTTTTGTTTTGTCTTAAAATAATTGTTTTTCA-TCATACAAGC
1 TCTATTTCAAATCGTTAT-GACCTTTTGTTTTGTCATAAAACAATTGTTTCT-ATTCATACAAGC
* * *
24722383 CTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAATAGATGATTTAAAA
64 TTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAATA-AAGATTTTAAA
** * * * *
24722448 AATAAATATACTTACCT-AACT-AGTTAAAATAGTTATGATTGTTTGAACAATTA
128 AATAAATATGTTTA-CTGAACTAAGTTCAAATAGTTATGACTATTTGAATAATTA
* * * * * * * *
24722501 TATATTTCAAATCATTATAACATTTTGTTTTTGTCATAAAACAATTATTTATGTTCATACAGGCT
1 TCTATTTCAAATCGTTATGACCTTTTG-TTTTGTCATAAAACAATTGTTTCTATTCATACAAGCT
* ** * * * *
24722566 TATTCAAAATAAAATAATACTAATCTAACAATACTAT-GAAAATTAATAACTAAGAGATTTAAAA
65 TATTCAAAATAAAATAATACTAATTTATTAATA-TTTCAAAAATTAATAAATAA-AGATTTTAAA
* * * * * * * *
24722630 AAAAAATTTGTTT-GTCGAACCAA-TTCAAATAGTTAAGGCTATATGAAGAATTA
128 AATAAATATGTTTACT-GAACTAAGTTCAAATAGTTATGACTATTTGAATAATTA
* * ** * * * * * * *
24722683 TCTATTTCAAATCGTTATAACCTTTAGTTTTGTTGTAAGACAA--GTTTTTGTGCACATAAGTTT
1 TCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTT
* * * * *
24722746 ATTCGAAATAAAATAATATTAATTTATTAATATTTTAAAAATTAAT--A-AGAGATTTCAAAAAT
66 ATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAATAAAGATTTTAAAAAT
* * ** * * * *
24722808 AAATTTATTTACCAAACT-AGTTCAATTATTTATAACAATTTGAATAATTA
131 AAATATGTTTACTGAACTAAGTTCAAATAGTTATGACTATTTGAATAATTA
* * ** * *
24722858 TTTATTTCAAATCATTAT-AATTATTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGTT
1 TCTATTTCAAATCGTTATGACCT-TTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCT
* * * *
24722922 TATTC-ATATGAAAATAACATTAATTTATTAATATTTCAACAATTAATAAATCAAAGATTTTAAA
65 TATTCAAAAT-AAAATAATACTAATTTATTAATATTTCAAAAATTAATAAAT-AAAGATTTTAAA
* *
24722986 AATAAATATGTTTACTGAA-TAAGTTCAAATAGTCATAACTATTTGAATAATTA
128 AATAAATATGTTTACTGAACTAAGTTCAAATAGTTATGACTATTTGAATAATTA
* * *** * * *
24723039 TATATTTCAAATTGTTATGACCTTTTGTTCCATCATAAAACAATTGTATCAATTCATA-TAGACT
1 TCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAG-CT
* * * * *
24723103 TATTCAAAATAAAATAATACTAATTTATTAATAATCCAAAAATTAATGAGTAGGAGA-TTTAAAA
65 TATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAATA-AAGATTTTAAAA
* * * **
24723167 TATGAACATGTTTACTGAAC-AAATTCAAATAGTTATGACTATTTGAGCAATTA
129 -ATAAATATGTTTACTGAACTAAGTTCAAATAGTTATGACTATTTGAATAATTA
* * * * **
24723220 TCTATTTCAAATCGTTATGACTTTTTGTTTTATCATAAAATAATTGTTTCTATTCAAACAAATTT
1 TCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTT
*** * * * * *
24723285 ATTTTGAATAAAATAATA-TAAATTTAATAATACTCCAAAAATTAATAAGTAAA-ACTTTTTAAA
66 ATTCAAAATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAATAAAGA-TTTTAAAA
* * * *
24723348 ATAAATCAT-TTTTCTGAAC-ACA-TTCAAATAATTATGCCTATTTAAATAATTA
129 ATAAAT-ATGTTTACTGAACTA-AGTTCAAATAGTTATGACTATTTGAATAATTA
** * * *
24723400 TCTATTTCAAATATTTATGACCTTTTGTTTTGTCATAAACCAAGTGTTTCTATTCATACAAGCAT
1 TCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTT
* * * * * *
24723465 ATTCAAAATAAAATAATATTAATTTTTTAATATTCCAAAAATTAATAAGAAAAAAATCTCT-AAA
66 ATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAA-ATAAAGAT-TTTAAAA
* * * * * * * *
24723529 ATAAATTTGTTTAC-CAAGTAAGTTTAAATTGTTATAACTGTTTGAACAATTA
129 ATAAATATGTTTACTGAACTAAGTTCAAATAGTTATGACTATTTGAATAATTA
* * * * * *
24723581 TTTATTTCAAA-CAGTTATGATCTTTTGTTTCGTCCTAAAACAATAGTTTCTATTCAAACAA-CT
1 TCTATTTCAAATC-GTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGC-
* * *** * *
24723644 TTATTCAAAATATAATTAATACTAATTT-TTAATA-TTCTAAAAATTAGTTGGTAGGAGATTTAA
64 TTATTCAAAATA-AAATAATACTAATTTATTAATATTTC-AAAAATTAATAAATA-AAGATTTTA
* * *
24723707 AAAATAAATATCTTTA-TCGAACT-AGTTCAAATAGTTATGTCCATTTGAATAATTA
126 AAAATAAATATGTTTACT-GAACTAAGTTCAAATAGTTATGACTATTTGAATAATTA
* * * * **
24723762 TCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAACAATTGTCTCTATTCATGCAAAATT
1 TCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTT
* *
24723827 ATTCAAAATAAAATAATACTAATCTATTAATATTTTAAAAA-T--T-AAT-AAGATATTTAAAAA
66 ATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAATAAAGAT-TTTAAAAA
* * *
24723887 CTAAATCTGTTTA-TCAA-AATAGTTCAAATAGTTATGACTATTTGAATAATTA
130 -TAAATATGTTTACTGAACTA-AGTTCAAATAGTTATGACTATTTGAATAATTA
* * * * * *
24723939 TCTATATC-AATCGTTTTGAAC-TTTATTTTGTCATAAAATAATTATTTCTATTCATACAAGCTT
1 TCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTT
*** * * * * * *
24724002 ATTTGGATTAAAATAATACTAATTTAATAATATTCCAAAAATTAGTAAGTAAGAGATTTAAAAAA
66 ATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAATAA-AGATTT-TAAAA
* * * ** ** * * *
24724067 ATAAATGTGCTTGCCAAACCCA-TTCAAATAGTTAGGACTATTAGAACAATTA
129 ATAAATATGTTTACTGAACTAAGTTCAAATAGTTATGACTATTTGAATAATTA
* * * * ** * * *
24724119 TCTATTTCAAATCATTTTGACATTCTGTTTTCACATAAAATAATTTTTTTCAATTCATACAAGCT
1 TCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAA-TTGTTTCTATTCATACAAGCT
24724184 TATTCAAAATAAAATAATAC
65 TATTCAAAATAAAATAATAC
24724204 AAAAAGATAA
Statistics
Matches: 1350, Mismatches: 287, Indels: 131
0.76 0.16 0.07
Matches are distributed among these distances:
174 3 0.00
175 150 0.11
176 24 0.02
177 103 0.08
178 4 0.00
179 53 0.04
180 216 0.16
181 561 0.42
182 198 0.15
183 38 0.03
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (181 bp):
TCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTT
ATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAATAAAGATTTTAAAAAT
AAATATGTTTACTGAACTAAGTTCAAATAGTTATGACTATTTGAATAATTA
Found at i:24723300 original size:362 final size:353
Alignment explanation
Indices: 24722319--24724203 Score: 1382
Period size: 361 Copynumber: 5.2 Consensus size: 353
24722309 AAAACATTTT
* * * * * *
24722319 TCTATTTCAAATTGTTATAAAACTTTTGTTTTGTCTTAAAATAATTGTTTTTCA-TCATACAAGC
1 TCTATTTCAAATT-TTAT-GACCTTTTGTTTTGTCATAAAACAATTGTATCT-ATTCATACAA-C
* *
24722383 CTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAATAGATGATTTAAAA
62 TTATTCAAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAAT--A-AGA-GATTT-AAA
** * * * * * * *
24722448 AATAAA-TATACTTAC-CTAACTAGTTAAAATAGTTATGATTGTTTGAACAATTATATATTTCAA
122 AATAAACT-TGTTTACTC-AACAAATTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAA
* * * * * * * * * ***
24722511 ATCATTATAACATTTTGTTTTTGTCATAAAACAATTATTTATGTTCATACAGGCTTATTCAAAAT
185 ATCGTTATGACTTTTTG-TTTTGTCATAAAACAATTGTTTCTATTCAAACAAGTTTATTTTGAAT
* * * *** * *
24722576 AAAATAATACTAATCTAACAATACTATGAAAATTAATAACTAAGAGATTTAAAAAAAAAAT-TTG
249 AAAATAATACTAATTTAATAATATTCCAAAAATTAATAAGTAA-AGATTTAAAAAATAAATATT-
** * * * * *
24722640 TTTGTCGAACCAA-TTCAAATAGTTAAGGCTATATGAAGAATTA
312 TTACT-GAA-TAAGTTCAAATAGTTATGACTATTTGAATAATTA
* * * ** * * * * * *
24722683 TCTATTTCAAATCGTTATAACCTTTAGTTTTGTTGTAAGACAAGTT-T-T-TGTGCACATAAGTT
1 TCTATTTCAAAT-TTTATGACCTTTTGTTTTGTCATAAAACAA-TTGTATCTATTCATACAA-CT
* * **
24722745 TATTCGAAATAAAATAATATTAATTTATTAATATTTTAAAAATTAATAAGAGATTTCAAAAATAA
63 TATTCAAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGAGATTT-AAAAATAA
* * * * * * * * * *
24722810 ATTTATTTAC-CAAACTAGTTCAATTATTTATAACAATTTGAATAATTATTTATTTCAAATCATT
127 ACTTGTTTACTC-AACAAATTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCGTT
* * * *
24722874 AT-AATTATTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGTTTA--TTCATATGAAAA
191 ATGACTT-TTTGTTTTGTCATAAAACAATTGTTTCTATTCAAACAAGTTTATTTTGA-AT-AAAA
* * * * * * *
24722936 TAACATTAATTTATTAATATTTCAACAATTAATAAATCAAAGATTTTAAAAATAAATATGTTTAC
253 TAATACTAATTTAATAATATTCCAAAAATTAATAAGT-AAAGATTTAAAAAATAAATAT-TTTAC
* *
24723001 TGAATAAGTTCAAATAGTCATAACTATTTGAATAATTA
316 TGAATAAGTTCAAATAGTTATGACTATTTGAATAATTA
* *** * *
24723039 TATATTTCAAATTGTTATGACCTTTTGTTCCATCATAAAACAATTGTATCAATTCATATAGACTT
1 TCTATTTCAAATT-TTATGACCTTTTGTTTTGTCATAAAACAATTGTATCTATTCATACA-ACTT
*
24723104 ATTCAAAATAAAATAATACTAATTTATTAATAATCCAAAAATTAATGAGTAGGAGATTTAAAATA
64 ATTCAAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAAT-A--A-GAGATTTAAAA-A
* * * * *
24723169 TGAACATGTTTACTGAACAAATTCAAATAGTTATGACTATTTGAGCAATTATCTATTTCAAATCG
124 TAAACTTGTTTACTCAACAAATTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCG
* * *
24723234 TTATGACTTTTTGTTTTATCATAAAATAATTGTTTCTATTCAAACAAATTTATTTTGAATAAAAT
189 TTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTATTCAAACAAGTTTATTTTGAATAAAAT
* ** *
24723299 AATA-TAAATTTAATAATACTCCAAAAATTAATAAGTAAA-ACTTTTTAAAATAAATCATTTTTC
254 AATACT-AATTTAATAATATTCCAAAAATTAATAAGTAAAGA-TTTAAAAAATAAAT-ATTTTAC
* * * *
24723362 TGAACACA-TTCAAATAATTATGCCTATTTAAATAATTA
316 TGAATA-AGTTCAAATAGTTATGACTATTTGAATAATTA
* * * *
24723400 TCTATTTCAAATATTTATGACCTTTTGTTTTGTCATAAACCAAGTGTTTCTATTCATACAAGCAT
1 TCTATTTCAAAT-TTTATGACCTTTTGTTTTGTCATAAAACAATTGTATCTATTCATACAA-CTT
* * *
24723465 ATTCAAAATAAAATAATATTAATTTTTTAATATTCCAAAAATTAATAAGAAAAAAATCTCT-AAA
64 ATTCAAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAG----AGAT-T-TAAAA
* * * * * * *
24723529 ATAAATTTGTTTAC-CAAGTAAGTTTAAATTGTTATAACTGTTTGAACAATTATTTATTTCAAA-
123 ATAAACTTGTTTACTCAA-CAAATTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAAT
* * * * ***
24723592 CAGTTATGA-TCTTTTGTTTCGTCCTAAAACAATAGTTTCTATTCAAACAACTTTATTCAAAATA
187 C-GTTATGACT-TTTTGTTTTGTCATAAAACAATTGTTTCTATTCAAACAAGTTTATTTTGAATA
* * * * ** *
24723656 TAATTAATACTAATTT-TTAATATTCTAAAAATTAGTTGGTAGGAGATTTAAAAAATAAATATCT
250 -AAATAATACTAATTTAATAATATTCCAAAAATTAATAAGTA-AAGATTTAAAAAATAAATAT-T
* *
24723720 TTA-TCGAACT-AGTTCAAATAGTTATGTCCATTTGAATAATTA
312 TTACT-GAA-TAAGTTCAAATAGTTATGACTATTTGAATAATTA
* * * * *
24723762 TCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAACAATTGTCTCTATTCATGCAAAATT
1 TCTATTTCAAAT-TTTATGACCTTTTGTTTTGTCATAAAACAATTGTATCTATTCATAC-AACTT
* ** *
24723827 ATTCAAAATAAAATAATACTAATCTATTAATATTTTAAAAATTAATAAGATATTTAAAAACTAAA
64 ATTCAAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGAGATTTAAAAA-TAAA
* * *
24723892 -TCTGTTTA-TCAA-AATAGTTCAAATAGTTATGACTATTTGAATAATTATCTATATC-AATCGT
128 CT-TGTTTACTCAACAA-A-TTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCGT
* * * * * * * *
24723953 TTTGAAC--TTTATTTTGTCATAAAATAATTATTTCTATTCATACAAGCTTATTTGGATTAAAAT
190 TATG-ACTTTTTGTTTTGTCATAAAACAATTGTTTCTATTCAAACAAGTTTATTTTGAATAAAAT
* * * *
24724016 AATACTAATTTAATAATATTCCAAAAATTAGTAAGTAAGAGATTTAAAAAAATAAATGTGCTTGC
254 AATACTAATTTAATAATATTCCAAAAATTAATAAGTAA-AGATTT-AAAAAATAAATAT-TTTAC
** ** * * *
24724081 CAAACCCA-TTCAAATAGTTAGGACTATTAGAACAATTA
316 TGAA-TAAGTTCAAATAGTTATGACTATTTGAATAATTA
* * ** * * * *
24724119 TCTATTTCAAATCATTT-TGACATTCTGTTTTCACATAAAATAATTTTTTTCAATTCATACAAGC
1 TCTATTTCAAAT--TTTATGACCTTTTGTTTTGTCATAAAACAA-TTGTATCTATTCATACAA-C
24724183 TTATTCAAAATAAAATAATAC
62 TTATTCAAAATAAAATAATAC
24724204 AAAAAGATAA
Statistics
Matches: 1220, Mismatches: 235, Indels: 138
0.77 0.15 0.09
Matches are distributed among these distances:
354 1 0.00
355 20 0.02
356 210 0.17
357 167 0.14
358 140 0.11
359 3 0.00
360 7 0.01
361 326 0.27
362 295 0.24
363 30 0.02
364 21 0.02
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (353 bp):
TCTATTTCAAATTTTATGACCTTTTGTTTTGTCATAAAACAATTGTATCTATTCATACAACTTAT
TCAAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGAGATTTAAAAATAAACTT
GTTTACTCAACAAATTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCGTTATGAC
TTTTTGTTTTGTCATAAAACAATTGTTTCTATTCAAACAAGTTTATTTTGAATAAAATAATACTA
ATTTAATAATATTCCAAAAATTAATAAGTAAAGATTTAAAAAATAAATATTTTACTGAATAAGTT
CAAATAGTTATGACTATTTGAATAATTA
Found at i:24723396 original size:18 final size:18
Alignment explanation
Indices: 24723370--24723418 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
24723360 TCTGAACACA
24723370 TTCAAATAATTATGCCTAT
1 TTCAAATAATTATG-CTAT
24723389 TT-AAATAATTAT-CTAT
1 TTCAAATAATTATGCTAT
*
24723405 TTCAAATATTTATG
1 TTCAAATAATTATG
24723419 ACCTTTTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 6 0.22
17 9 0.33
18 10 0.37
19 2 0.07
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (18 bp):
TTCAAATAATTATGCTAT
Found at i:24723589 original size:542 final size:534
Alignment explanation
Indices: 24722288--24724203 Score: 1685
Period size: 542 Copynumber: 3.6 Consensus size: 534
24722278 TATCGAATTG
* * * * * * *
24722288 GTTCAAATAATTATGGCCATTAAAACATTTTTCTATTTCAAAT--TGTTATAAAACTTTTGTTTT
1 GTTCAAATAATTATGACTATTTAAATAATTATCTATTTCAAATCAT-TTAT-GAACTTTTGTTTT
* * * *
24722351 GTCTTAAAATAATTGTTTTTCA-TCATACAAGCCTATTCAAAATAAAATAATACTAATTTATTAA
64 GTCATAAAACAATTGTTTCT-ATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAA
* * * * **
24722415 TATTTCAAAAATTAATAAATAGATGATTTAAAAAATAAATATACTTACCTAACT-AGTTAAAATA
128 TATTCCAAAAATTAATAAATAAAAGA-TTATAAAATAAATATGTTTACC-AA-TAAGTTAAAATA
* * * * *
24722479 GTTATGATTGTTTGAACAATTATATATTTCAAATCA-TTATAACATTTTGTTTTTGTCATAAAAC
190 GTTATAACTGTTTGAACAATTATATATTTCAAAT-AGTTATGACCTTTTG-TTTCGTCATAAAAC
* * * * * ** * * *
24722543 AATTATTTATGTTCATACAGGCTTATTCAAAATAAAATAATACTAATCTAACAATACTATGAAAA
253 AATTGTTCA-ATTCATACAGACTTATTCAAAATAAAATAATACTAATTTATTAATAATCTAAAAA
* * * * * * * * * *
24722608 TTAATAACTAAGAGATTTAAAAAAAAAATTTGTTTGTCGAACCAATTCAAATAGTTAAGGCTATA
317 TTAATGAGTAGGAGATTTAAAAAATAAATATGTTTATCGAACAAATTCAAATAGTTATGACTATT
* * ** * * * *
24722673 TGAAGAATTATCTATTTCAAATCGTTATAACCTTTAGTTTTGTTGTAAGACAA--GTTTTTGTGC
382 TG-AGAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTC
* * * * *
24722736 ACATAAGTTTA-TTCGAAATAAAATAATATTAATTTATTAATATTTTAAAAATTAATAAGAGATT
446 AAACAAATTTATTTAG-AATAAAATAATA-TAATTTATTAATATTTTAAAAATTAATAAGAAATT
*
24722800 TCAAAAATAAAT-TTATTTAC-CAAACTA
509 TTAAAAATAAATCTT-TTT-CTCAAAC-A
* * * * * * *
24722827 GTTCAATTATTTATAACAATTTGAATAATTATTTATTTCAAATCA-TTAT-AATTATTTGTTTTG
1 GTTCAAATAATTATGACTATTTAAATAATTATCTATTTCAAATCATTTATGAACT-TTTGTTTTG
* * * * *
24722890 TCATAAAACAATTGTTTTTATTCATACAAGTTTATTC-ATATGAAAATAACATTAATTTATTAAT
65 TCATAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAAT-AAAATAATACTAATTTATTAAT
* * * * * *
24722954 ATTTCAACAATTAATAAATCAAAGATTTTAAAAATAAATATGTTTACTGAATAAGTTCAAATAGT
129 ATTCCAAAAATTAATAAATAAAAGATTAT-AAAATAAATATGTTTAC-CAATAAGTTAAAATAGT
* * * * * *
24723019 CATAACTATTTGAATAATTATATATTTCAAATTGTTATGACCTTTTGTTCCATCATAAAACAATT
192 TATAACTGTTTGAACAATTATATATTTCAAATAGTTATGACCTTTTGTTTCGTCATAAAACAATT
* *
24723084 GTATCAATTCATATAGACTTATTCAAAATAAAATAATACTAATTTATTAATAATCCAAAAATTAA
257 GT-TCAATTCATACAGACTTATTCAAAATAAAATAATACTAATTTATTAATAATCTAAAAATTAA
* * *
24723149 TGAGTAGGAGATTTAAAATATGAACATGTTTA-CTGAACAAATTCAAATAGTTATGACTATTTGA
321 TGAGTAGGAGATTTAAAAAATAAATATGTTTATC-GAACAAATTCAAATAGTTATGACTATTTGA
* * *
24723213 GCAATTATCTATTTCAAATCGTTATGACTTTTTGTTTTATCATAAAATAATTGTTTCTATTCAAA
385 G-AATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCAAA
* * * **
24723278 CAAATTTATTTTGAATAAAATAATATAAATTTAATAATACTCCAAAAATTAATAAGTAAAACTTT
449 CAAATTTATTTAGAATAAAATAATAT-AATTTATTAATATTTTAAAAATTAATAAG--AAA-TTT
* *
24723343 TTAAAATAAATCATTTTTCTGAACACA
510 TAAAAATAAATC-TTTTTCTCAA-ACA
* *
24723370 -TTCAAATAATTATGCCTATTTAAATAATTATCTATTTCAAAT-ATTTATGACCTTTTGTTTTGT
1 GTTCAAATAATTATGACTATTTAAATAATTATCTATTTCAAATCATTTATGAACTTTTGTTTTGT
* * * * *
24723433 CATAAACCAAGTGTTTCTATTCATACAAGCATATTCAAAATAAAATAATATTAATTTTTTAATAT
66 CATAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATAT
* * * * *
24723498 TCCAAAAATTAATAAGA-AAAAAATCTCTAAAATAAATTTGTTTACCAAGTAAGTTTAAATTGTT
131 TCCAAAAATTAATAA-ATAAAAGAT-TATAAAATAAATATGTTTACCAA-TAAGTTAAAATAGTT
* * * * *
24723562 ATAACTGTTTGAACAATTATTTATTTCAAACAGTTATGATCTTTTGTTTCGTCCTAAAACAATAG
193 ATAACTGTTTGAACAATTATATATTTCAAATAGTTATGACCTTTTGTTTCGTCATAAAACAATTG
* * * *
24723627 TTTCTATTCAAACA-ACTTTATTCAAAATATAATTAATACTAATTT-TTAATATTCTAAAAATTA
258 -TTCAATTCATACAGAC-TTATTCAAAATA-AAATAATACTAATTTATTAATAATCTAAAAATTA
* * * * * *
24723690 GTTG-GTAGGAGATTTAAAAAATAAATATCTTTATCGAACTAGTTCAAATAGTTATGTCCATTTG
320 -ATGAGTAGGAGATTTAAAAAATAAATATGTTTATCGAACAAATTCAAATAGTTATGACTATTTG
* * * * *
24723754 AATAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAACAATTGTCTCTATTCAT
384 -AGAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCAA
* * * * * *
24723819 GCAAAATTATTCAAAATAAAATAATACTAATCTATTAATATTTTAAAAATTAATAAGATA-TTTA
448 ACAAATTTATTTAGAATAAAATAATA-TAATTTATTAATATTTTAAAAATTAATAAGAAATTTTA
* * *
24723883 AAAACTAAATCTGTTTATCAAAATA
512 AAAA-TAAATCTTTTTCTC-AAACA
* * * * *
24723908 GTTCAAATAGTTATGACTATTTGAATAATTATCTATATC-AATCGTTT-TGAAC-TTTATTTTGT
1 GTTCAAATAATTATGACTATTTAAATAATTATCTATTTCAAATCATTTATGAACTTTTGTTTTGT
* * *** * *
24723970 CATAAAATAATTATTTCTATTCATACAAGCTTATTTGGATTAAAATAATACTAATTTAATAATAT
66 CATAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATAT
* * * * * * * *
24724035 TCCAAAAATTAGTAAGTAAGAGATTTAAAAAAATAAATGTGCTTGCCAA-ACCCA-TTCAAATAG
131 TCCAAAAATTAATAAATAAAAGA-TT-ATAAAATAAATATGTTTACCAATA---AGTTAAAATAG
** * * * * * * * *
24724098 TTAGGACTATTAGAACAATTATCTATTTCAAATCA-TTTTGACATTCTGTTTTC-ACATAAAATA
191 TTATAACTGTTTGAACAATTATATATTTCAAAT-AGTTATGACCTTTTG-TTTCGTCATAAAACA
*
24724161 ATTTTTTTCAATTCATACA-AGCTTATTCAAAATAAAATAATAC
254 A--TTGTTCAATTCATACAGA-CTTATTCAAAATAAAATAATAC
24724204 AAAAAGATAA
Statistics
Matches: 1114, Mismatches: 212, Indels: 103
0.78 0.15 0.07
Matches are distributed among these distances:
536 4 0.00
537 244 0.22
538 248 0.22
539 163 0.15
540 7 0.01
541 7 0.01
542 403 0.36
543 34 0.03
544 4 0.00
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (534 bp):
GTTCAAATAATTATGACTATTTAAATAATTATCTATTTCAAATCATTTATGAACTTTTGTTTTGT
CATAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATAT
TCCAAAAATTAATAAATAAAAGATTATAAAATAAATATGTTTACCAATAAGTTAAAATAGTTATA
ACTGTTTGAACAATTATATATTTCAAATAGTTATGACCTTTTGTTTCGTCATAAAACAATTGTTC
AATTCATACAGACTTATTCAAAATAAAATAATACTAATTTATTAATAATCTAAAAATTAATGAGT
AGGAGATTTAAAAAATAAATATGTTTATCGAACAAATTCAAATAGTTATGACTATTTGAGAATTA
TCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCAAACAAATTT
ATTTAGAATAAAATAATATAATTTATTAATATTTTAAAAATTAATAAGAAATTTTAAAAATAAAT
CTTTTTCTCAAACA
Found at i:24724517 original size:179 final size:173
Alignment explanation
Indices: 24724210--24724818 Score: 519
Period size: 179 Copynumber: 3.4 Consensus size: 173
24724200 ATACAAAAAG
* * * * *
24724210 ATAATTGTTCAAATAGTCATAATTATTTAAACTTGTTTGATAAACA-AATT-TTTTTTAAATCTC
1 ATAATT-TTCAAATAGTCATAACTATTTGAACTAG-TTGATAAACAGATTTATTTTTTAAATGTC
* * * * *
24724273 TTAAATATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTTCAAATAAACTTATATGAA
64 -T---TATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCGAATAAACTTATATGAA
*
24724338 CTAAAACAAGTATTTTATGACAAAACAGAAGGTCATAATGATTTGAAATAT
125 C-AAAACAAGTATTTTATGACAAAACAGAA-GTCATAATGATTTGAAATAA
* * * * * *
24724389 ATCATTATTCAAATAGTCAT-ACTATTTGATCTAGTTCGGTAAACATATTTATTTTTTAATTTTT
1 ATAATT-TTCAAATAGTCATAACTATTTGAACTAGTT-GATAAACAGATTTATTTTTTAA--ATG
* * *
24724453 TACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCGTATAAGCTTGTATGAAC
62 T-CTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCGAATAAACTTATATGAAC
* * *
24724518 ATAAA-TAGTAGTTTTATAACAGGATA-AGAAGTCATAATGATTTGAAATAA
126 A-AAACAAGTA-TTTTATGACA--AAACAGAAGTCATAATGATTTGAAATAA
* * *
24724568 ATAATTTATCAAATAATCATAACTATTTGAACTGGTTGATAAATAGATTTATTTTTTAAATGTCT
1 ATAATTT-TCAAATAGTCATAACTATTTGAACTAGTTGATAAACAGATTTATTTTTTAAATGTCT
* ** * * * *
24724633 TATTAATTTTTGAAATATTAATAGATTAGTATTACTTT-ATTTGAAACAAACTTATATGAACAAA
65 TATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCG-AATAAACTTATATGAAC-AA
** * * * * *
24724697 AACATTTGTTTTATGATAAAACAAAATATCATAATGATTTGAAATAG
128 AACAAGTATTTTATGACAAAACAGAA-GTCATAATGATTTGAAATAA
* * * * * * ** *
24724744 ATAATTGTTCAAATAGTTATAATTAATTGAACTGGTTAGGTAAACAAAAATATTTTTTTAAATCT
1 ATAATT-TTCAAATAGTCATAACTATTTGAACTAGTT-GATAAACAGATTTA-TTTTTTAAATGT
24724809 CTTATTAATT
63 CTTATTAATT
24724819 TTTGAAATAT
Statistics
Matches: 349, Mismatches: 61, Indels: 41
0.77 0.14 0.09
Matches are distributed among these distances:
174 2 0.01
175 7 0.02
176 108 0.31
177 16 0.05
178 44 0.13
179 140 0.40
180 26 0.07
181 2 0.01
182 3 0.01
183 1 0.00
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.42
Consensus pattern (173 bp):
ATAATTTTCAAATAGTCATAACTATTTGAACTAGTTGATAAACAGATTTATTTTTTAAATGTCTT
ATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCGAATAAACTTATATGAACAAAAC
AAGTATTTTATGACAAAACAGAAGTCATAATGATTTGAAATAA
Found at i:24724710 original size:176 final size:176
Alignment explanation
Indices: 24724210--24725474 Score: 582
Period size: 178 Copynumber: 7.2 Consensus size: 176
24724200 ATACAAAAAG
* * * * *
24724210 ATAATTGT-TCAAATAGTCATAATTATTTAAACTTGTTTGATAAACAAA-TT-TTTTTTAAATCT
1 ATAATT-TATCAAATAGTCATAACTATTTGAACTGGTTAGGTAAACAAATTTATTTTTTAAATCT
*
24724272 CTTAAATATTAATTTTT-AGAATATTAATAAATTAGTATTATTTTATTTCAAATAAACTTATATG
65 C-T---TATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTGAAATAAACTTATATG
* * * *
24724336 AACTAAAACAAGTATTTTATGACAAAACAGAAGGTCATAATGATTTGAAATAT
125 AACAAAAACAATTGTTTTATGACAAAA-AGAAGGTCATAATGATTTGAAATAA
* * * * * *
24724389 ATCA-TTATTCAAATAGTCAT-ACTATTTGATCTAGTTCGGTAAACATATTTATTTTTTAATTTT
1 ATAATTTA-TCAAATAGTCATAACTATTTGAACTGGTTAGGTAAACAAATTTATTTTTTAA--AT
* * ** * * * *
24724452 TTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCG-TATAAGCTTGTATGA
63 CT-CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTT-ATTTGAAATAAACTTATATGA
* * * * * *
24724516 ACATAAATAGTAGTTTTATAACAGGATAAGAA-GTCATAATGATTTGAAATAA
126 ACAAAAACAATTGTTTTATGACA--AAAAGAAGGTCATAATGATTTGAAATAA
* * * * *
24724568 ATAATTTATCAAATAATCATAACTATTTGAACTGGTT-GATAAATAGATTTATTTTTTAAATGTC
1 ATAATTTATCAAATAGTCATAACTATTTGAACTGGTTAGGTAAACAAATTTATTTTTTAAATCTC
* * *
24724632 TTATTAATTTTTGAAATATTAATAGATTAGTATTACTTTATTTGAAACAAACTTATATGAACAAA
66 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTGAAATAAACTTATATGAACAAA
* * * ** *
24724697 AACATTTGTTTTATGATAAAACAAAATATCATAATGATTTGAAATAG
131 AACAATTGTTTTATGACAAAA-AGAAGGTCATAATGATTTGAAATAA
* * * **
24724744 ATAATTGT-TCAAATAGTTATAATTAATTGAACTGGTTAGGTAAACAAAAATATTTTTTTAAATC
1 ATAATT-TATCAAATAGTCATAACTATTTGAACTGGTTAGGTAAACAAATTTA-TTTTTTAAATC
* * * *
24724808 TCTTATTAATTTTTGAAATATTAACAATTTCA-TTTTATTTTATTTTG-AATAAGC-TAGTATGA
64 TCTTATTAATTTTTGAAATATTAATAAATT-AGTATTATTTTA-TTTGAAATAAACTTA-TATGA
**** ** * * * * * *
24724870 ATTGGAA-TTTTGTTTTATTACAAAACAAAAAGGTCATAACGTTTTGATATAG
126 ACAAAAACAATTGTTTTATGAC-AAA-AAGAAGGTCATAATGATTTGAAATAA
* * * * ** **
24724922 ATAGTTGT-TCGTAA-AGTCTTAAATATTTGAACTAACTT-GACAAACAAATTTA-TTTTT-AAT
1 ATAATT-TATC-AAATAGTCATAACTATTTGAACT-GGTTAGGTAAACAAATTTATTTTTTAAAT
* * ** *
24724982 CCTCTTAGTTATTAATTTTT-AGAATATTATTAGATTAGTATTATTTTATTCCAAATAAGCTTAT
63 -CTC----TTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTGAAATAAACTTAT
** * ** * ** * * *
24725046 ACT-ATTATATAAGTATTATATATATATTTCAAATAG-A--T-A-ATTG--TTGAAATAGCC
122 A-TGAACA-AAAACAATTGT-T-T-TATGACAAAAAGAAGGTCATAATGATTTGAAATA--A
* * * * *
24725100 ATAA-TTAT----T--T--GACCTAATT---C-GG-TA-G---ACAAAATCATTTTTCTAAATCA
1 ATAATTTATCAAATAGTCATAACTATTTGAACTGGTTAGGTAAACAAATTTATTTTT-TAAAT--
* * * * * * *
24725147 CTTACCTATTAATTTTTGGAATATTAATAAATTACTATTTTTTTATTTCAAATAAGCTTGTATGA
63 C-T-CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTGAAATAAACTTATATGA
** * * * * *
24725212 ACTGAAACAGTTGTTTTATGA-AAAAA-AAAGTGATAATGATTTTAAATAG
126 ACAAAAACAATTGTTTTATGACAAAAAGAAGGTCATAATGATTTGAAATAA
* * * *
24725261 ATAATTGT-TCAAATAGTCATATCTATTTGAATTTGTTCA-GTAAACAAATTAATTTTTTTAAAC
1 ATAATT-TATCAAATAGTCATAACTATTTGAACTGGTT-AGGTAAACAAATTTA-TTTTTTAAA-
* * * *
24725324 TCTTGCTTATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATTTTG-GATAAGCTTTTAT
62 TC-T-CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTA-TTTGAAATAAACTTATAT
** * * * * * *
24725388 GAACTGAAATAATTGTTTTTTGTCAAAACAAAAGGTCATAACGATTTTAAATAA
124 GAACAAAAACAATTGTTTTATGACAAAA-AGAAGGTCATAATGATTTGAAATAA
24725442 ATAATTGT-TCAAATAGTCATAACTATTTGAACT
1 ATAATT-TATCAAATAGTCATAACTATTTGAACT
24725475 TGATCAGTAA
Statistics
Matches: 823, Mismatches: 177, Indels: 170
0.70 0.15 0.15
Matches are distributed among these distances:
157 5 0.01
158 3 0.00
159 2 0.00
160 9 0.01
161 17 0.02
162 52 0.06
163 12 0.01
164 1 0.00
165 1 0.00
166 3 0.00
168 1 0.00
169 5 0.01
170 6 0.01
171 1 0.00
174 3 0.00
175 11 0.01
176 130 0.16
177 28 0.03
178 210 0.26
179 163 0.20
180 83 0.10
181 57 0.07
182 8 0.01
183 3 0.00
184 4 0.00
185 5 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.43
Consensus pattern (176 bp):
ATAATTTATCAAATAGTCATAACTATTTGAACTGGTTAGGTAAACAAATTTATTTTTTAAATCTC
TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTGAAATAAACTTATATGAACAAA
AACAATTGTTTTATGACAAAAAGAAGGTCATAATGATTTGAAATAA
Found at i:24725382 original size:178 final size:181
Alignment explanation
Indices: 24725071--24725502 Score: 503
Period size: 181 Copynumber: 2.4 Consensus size: 181
24725061 TTATATATAT
* * * * ** * * * *
24725071 ATTTCAAATAGATAATTGTTGAAATAGCCATAAT-TATTTGACCTAATTCGGTAGACAAAATCAT
1 ATTTTAAATAGATAATTGTTCAAATAGTCAT-ATCTATTTGAACTTGTTCAGTAAACAAATTAAT
* * * *
24725135 TTTTCTAAATCACTTACCTATTAATTTTTGGAATATTAATAAATTACTATTTTTTTATTTCAAAT
65 TTTTTTAAATCACTTACCTATTAATTTTTGAAATATTAAGAAATTACTATTATTTTATTTCAAAT
* * *
24725200 AAGCTTGTATGAACTGAAACAGTTGTTTTATG-AAAA-AAAAAGTGATAATG
130 AAGCTTGTATGAACTGAAACAATTGTTTTATGCAAAACAAAAAGTCATAACG
*
24725250 ATTTTAAATAGATAATTGTTCAAATAGTCATATCTATTTGAATTTGTTCAGTAAACAAATTAATT
1 ATTTTAAATAGATAATTGTTCAAATAGTCATATCTATTTGAACTTGTTCAGTAAACAAATTAATT
* * * * ***
24725315 TTTTTAAA-CTCTTGCTTATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATTTTGGATA
66 TTTTTAAATCACTTACCTATTAATTTTTGAAATATTAAGAAATTACTATTATTTTATTTCAAATA
* * * *
24725379 AGCTTTTATGAACTGAAATAATTGTTTTTTGTCAAAACAAAAGGTCATAACG
131 AGCTTGTATGAACTGAAACAATTGTTTTATG-CAAAACAAAAAGTCATAACG
* * * * * *
24725431 ATTTTAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTTGATCAGTAAATAGATTTATT
1 ATTTTAAATAGATAATTGTTCAAATAGTCATATCTATTTGAACTTGTTCAGTAAACAAATTAATT
24725496 TTTTTAA
66 TTTTTAA
24725503 TTAATTACTA
Statistics
Matches: 213, Mismatches: 36, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
178 75 0.35
179 58 0.27
180 4 0.02
181 76 0.36
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.42
Consensus pattern (181 bp):
ATTTTAAATAGATAATTGTTCAAATAGTCATATCTATTTGAACTTGTTCAGTAAACAAATTAATT
TTTTTAAATCACTTACCTATTAATTTTTGAAATATTAAGAAATTACTATTATTTTATTTCAAATA
AGCTTGTATGAACTGAAACAATTGTTTTATGCAAAACAAAAAGTCATAACG
Found at i:24725916 original size:19 final size:20
Alignment explanation
Indices: 24725892--24725957 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 20
24725882 ATTTATTTGT
24725892 ATATAA-TAAATACTTACAA
1 ATATAATTAAATACTTACAA
* *
24725911 ATATAATTTAATGCTTACAA
1 ATATAATTAAATACTTACAA
* * *
24725931 ATGT-ATTAACTA-TTAGAA
1 ATATAATTAAATACTTACAA
24725949 ATAT-ATTAA
1 ATATAATTAA
24725958 TTAATGCTAT
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
18 13 0.34
19 11 0.29
20 14 0.37
ACGTcount: A:0.50, C:0.08, G:0.05, T:0.38
Consensus pattern (20 bp):
ATATAATTAAATACTTACAA
Found at i:24726552 original size:19 final size:19
Alignment explanation
Indices: 24726502--24726553 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
24726492 AATATTTATA
*
24726502 ATAATTATTTAATATTAATT
1 ATAATTA-TTAATATTAACT
* *
24726522 AT-TTTGAATAATATTAACT
1 ATAATT-ATTAATATTAACT
24726541 ATAATTATTAATA
1 ATAATTATTAATA
24726554 AATAAATTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 5
0.71 0.14 0.14
Matches are distributed among these distances:
19 20 0.80
20 5 0.20
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (19 bp):
ATAATTATTAATATTAACT
Found at i:24727701 original size:20 final size:21
Alignment explanation
Indices: 24727662--24727707 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 21
24727652 GAATAAATAT
24727662 ATTTATTAATATTTATTAATTTA
1 ATTTATTAATA--TATTAATTTA
24727685 ATTTATTAATA-ATTAATTTA
1 ATTTATTAATATATTAATTTA
24727705 ATT
1 ATT
24727708 AATTTTATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 12 0.52
23 11 0.48
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTTATTAATATATTAATTTA
Found at i:24727916 original size:28 final size:29
Alignment explanation
Indices: 24727860--24727917 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 29
24727850 TTTATGATAT
24727860 AATTATAATTATAAACATTAATATTATTA
1 AATTATAATTATAAACATTAATATTATTA
*
24727889 AATTAGTAATTATACA-ATT-ATATTATTA
1 AATTA-TAATTATAAACATTAATATTATTA
24727917 A
1 A
24727918 TATTTCATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 10 0.37
29 8 0.30
30 9 0.33
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (29 bp):
AATTATAATTATAAACATTAATATTATTA
Found at i:24728116 original size:19 final size:20
Alignment explanation
Indices: 24728076--24728123 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
24728066 AATAAAAATA
24728076 ATTTTCAAATATATATTAACT
1 ATTTT-AAATATATATTAACT
*
24728097 ATTTTAAATA-ATATTTACT
1 ATTTTAAATATATATTAACT
*
24728116 ATTATAAA
1 ATTTTAAA
24728124 CAACATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 15 0.60
20 5 0.20
21 5 0.20
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (20 bp):
ATTTTAAATATATATTAACT
Found at i:24728131 original size:19 final size:19
Alignment explanation
Indices: 24728094--24728132 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
24728084 ATATATATTA
* * *
24728094 ACTATTTTAAATAATATTT
1 ACTATTATAAACAACATTT
24728113 ACTATTATAAACAACATTT
1 ACTATTATAAACAACATTT
24728132 A
1 A
24728133 TATATTATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (19 bp):
ACTATTATAAACAACATTT
Found at i:24728323 original size:15 final size:15
Alignment explanation
Indices: 24728305--24728334 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
24728295 ATTCTAATCT
24728305 ATTATAATTATAATA
1 ATTATAATTATAATA
24728320 ATTATAATTATAATA
1 ATTATAATTATAATA
24728335 TTACAAAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTATAATTATAATA
Found at i:24728918 original size:179 final size:178
Alignment explanation
Indices: 24728596--24729168 Score: 622
Period size: 182 Copynumber: 3.2 Consensus size: 178
24728586 TTAATAAGAC
* * *
24728596 AATTAATAAGTAAAAGATTTAAAAAATAAATCTA-TTTATCGAATAAATTC-AATTGTTATAACT
1 AATTAATAAGTAAAAGATTTAAAAAATAAAT-TAGTTTATCGAATAAGTTCAAATAGTTATGACT
* * *
24728659 ATTTGAATAATTATTTATTTCAAATTC-TTATGACTTTTTTGTTTTGTCATAAAACAATTGTTTT
65 ATTTGAATAATTATCTATTTCAAA-TCATT-TAAC-ATTTTGTTTTGTCATAAAACAATTG-TTT
* * * * * * *
24728723 CGTCCATATGAGCTTATTCGAATTAAAATAATATTGATTTATTAATATTTCAAC
126 CATTCAT-TAAGCTTATTCGAAATAAAATAATATTAATTTATTAATATTCCAAA
* * * *
24728777 AATTAATAAGTAAAAGA-TTAAAAAA-AAATAAGTTTACCAAATAAGTTCAAATAGTCATGACTA
1 AATTAATAAGTAAAAGATTTAAAAAATAAATTAGTTTATCGAATAAGTTCAAATAGTTATGACTA
* *
24728840 TTTGAATAATTATCTACTTCAAATCATTGTAACATTTTGTTTTGTAATAAAACAATTGTTTCAAT
66 TTTGAATAATTATCTATTTCAAATCATT-TAACATTTTGTTTTGTCATAAAACAATTGTTTC-AT
* * * * *
24728905 TCATGTTAGCTTATTTGAAATAAAATAATACTAATTTTTTGATATTCCAAA
129 TCAT-TAAGCTTATTCGAAATAAAATAATATTAATTTATTAATATTCCAAA
* * ** * *
24728956 AATTAAAAAGTAAGAGAATCAAAAAAATAAATTTGTTTATCGAACAAGTTCAAATAGTTATGACT
1 AATTAATAAGTAAAAG-ATTTAAAAAATAAATTAGTTTATCGAATAAGTTCAAATAGTTATGACT
* * * * *
24729021 ATCTT-AATAATTATGTATTTCAAAACATTAAAAAGTTTTGTTTTGTCATAAAACAATTGGTTCT
65 AT-TTGAATAATTATCTATTTCAAATCATTTAACA-TTTTGTTTTGTCATAAAACAATTGTTTC-
* *
24729085 ATTCATTCAAGCTTATTTC-AAATAAAATAATATAAATTTATTAATGTTCCAAA
127 ATTCATT-AAGCTTA-TTCGAAATAAAATAATATTAATTTATTAATATTCCAAA
24729138 AATTAATAAGTAAAA-ATTTAAAAAATAAATT
1 AATTAATAAGTAAAAGATTTAAAAAATAAATT
24729169 TATTTAAAAA
Statistics
Matches: 327, Mismatches: 54, Indels: 23
0.81 0.13 0.06
Matches are distributed among these distances:
178 5 0.02
179 97 0.30
180 60 0.18
181 27 0.08
182 134 0.41
183 4 0.01
ACGTcount: A:0.44, C:0.09, G:0.08, T:0.40
Consensus pattern (178 bp):
AATTAATAAGTAAAAGATTTAAAAAATAAATTAGTTTATCGAATAAGTTCAAATAGTTATGACTA
TTTGAATAATTATCTATTTCAAATCATTTAACATTTTGTTTTGTCATAAAACAATTGTTTCATTC
ATTAAGCTTATTCGAAATAAAATAATATTAATTTATTAATATTCCAAA
Found at i:24730080 original size:22 final size:22
Alignment explanation
Indices: 24730031--24730081 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
24730021 CTAAATTATT
24730031 ATTAATATATTATTATTTGAACA
1 ATTAA-ATATTATTATTTGAACA
* *
24730054 TTTAAATATTAGTTATTT-AATA
1 ATTAAATATTA-TTATTTGAACA
24730076 ATTAAA
1 ATTAAA
24730082 CTTTAATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (22 bp):
ATTAAATATTATTATTTGAACA
Found at i:24730212 original size:22 final size:21
Alignment explanation
Indices: 24730181--24730229 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
24730171 ACAAAACTAT
24730181 TTAATATATAATAATTATAATA
1 TTAATATATAATAATTA-AATA
* * *
24730203 TTAATTTATAATTATTAACTA
1 TTAATATATAATAATTAAATA
24730224 TTAATA
1 TTAATA
24730230 ATGATAAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TTAATATATAATAATTAAATA
Found at i:24730508 original size:11 final size:12
Alignment explanation
Indices: 24730471--24730594 Score: 51
Period size: 12 Copynumber: 10.2 Consensus size: 12
24730461 TCTATATATG
*
24730471 TTATTAGTAATA
1 TTATTATTAATA
* *
24730483 ATAATA-TAATA
1 TTATTATTAATA
24730494 TTATTATTAAT-
1 TTATTATTAATA
*
24730505 TTATTA-AAATAA
1 TTATTATTAAT-A
* *
24730517 TAATTAATAA-A
1 TTATTATTAATA
24730528 TTGATTATTAA-A
1 TT-ATTATTAATA
* *
24730540 ATATTCATTAAAA
1 TTATT-ATTAATA
*
24730553 TAATTATTAATAA
1 TTATTATTAAT-A
*
24730566 TTATAATTTAAATA
1 TTATTA-TT-AATA
*
24730580 TTAATTATAAATA
1 TT-ATTATTAATA
24730593 TT
1 TT
24730595 TATCTTATTA
Statistics
Matches: 84, Mismatches: 17, Indels: 21
0.69 0.14 0.17
Matches are distributed among these distances:
10 3 0.04
11 20 0.24
12 32 0.38
13 17 0.20
14 6 0.07
15 6 0.07
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.47
Consensus pattern (12 bp):
TTATTATTAATA
Found at i:24730522 original size:12 final size:12
Alignment explanation
Indices: 24730507--24730592 Score: 55
Period size: 12 Copynumber: 6.8 Consensus size: 12
24730497 TTATTAATTT
24730507 ATTAAAATAATA
1 ATTAAAATAATA
* *
24730519 ATTAATAAATTGATT
1 ATT-A-AAA-TAATA
* *
24730534 ATTAAAATATTC
1 ATTAAAATAATA
*
24730546 ATTAAAATAATT
1 ATTAAAATAATA
*
24730558 ATTAATAATTATA
1 ATTAA-AATAATA
* *
24730571 ATTTAAATATTA
1 ATTAAAATAATA
24730583 ATTATAAATA
1 ATTA-AAATA
24730593 TTTATCTTAT
Statistics
Matches: 56, Mismatches: 13, Indels: 9
0.72 0.17 0.12
Matches are distributed among these distances:
12 28 0.50
13 18 0.32
14 4 0.07
15 6 0.11
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (12 bp):
ATTAAAATAATA
Found at i:24730553 original size:39 final size:37
Alignment explanation
Indices: 24730479--24730592 Score: 112
Period size: 37 Copynumber: 3.1 Consensus size: 37
24730469 TGTTATTAGT
*
24730479 AATAATAATATAAT-ATTATTATT--AAT-TT-ATTAA
1 AATAATAAT-TAATAATTATAATTAAAATATTAATTAA
* *
24730512 AATAATAATTAATAAATTGATTATTAAAATATTCATTAA
1 AATAATAATTAAT-AATT-ATAATTAAAATATTAATTAA
* *
24730551 AATAATTATTAATAATTATAATTTAAATATTAATTATA
1 AATAATAATTAATAATTATAATTAAAATATTAATTA-A
24730589 AATA
1 AATA
24730593 TTTATCTTAT
Statistics
Matches: 69, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
32 4 0.06
33 9 0.13
34 3 0.04
35 6 0.09
37 19 0.28
38 11 0.16
39 17 0.25
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.45
Consensus pattern (37 bp):
AATAATAATTAATAATTATAATTAAAATATTAATTAA
Found at i:24730561 original size:27 final size:27
Alignment explanation
Indices: 24730505--24730561 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
24730495 TATTATTAAT
*
24730505 TTATTAAAATAATAATTAATAAATTGA
1 TTATTAAAATAATAATTAAAAAATTGA
* *
24730532 TTATTAAAATATTCATTAAAATAATT-A
1 TTATTAAAATAATAATTAAAA-AATTGA
24730559 TTA
1 TTA
24730562 ATAATTATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (27 bp):
TTATTAAAATAATAATTAAAAAATTGA
Found at i:24730584 original size:28 final size:27
Alignment explanation
Indices: 24730481--24730597 Score: 75
Period size: 28 Copynumber: 4.4 Consensus size: 27
24730471 TTATTAGTAA
* *
24730481 TAATAA-TATAATATTATTATTAATTTAT
1 TAATAATTATAAT-TAAATATTAA-TTAT
* * *
24730509 TAA-AATAATAATTAATAAATTGATTAT
1 TAATAATTATAATTAA-ATATTAATTAT
*
24730536 TAA-AA-TATTCATTAAA-A-TAATTAT
1 TAATAATTA-TAATTAAATATTAATTAT
24730560 TAATAATTATAATTTAAATATTAATTAT
1 TAATAATTATAA-TTAAATATTAATTAT
* *
24730588 AAATATTTAT
1 TAATAATTAT
24730598 CTTATTAAAC
Statistics
Matches: 70, Mismatches: 11, Indels: 16
0.72 0.11 0.16
Matches are distributed among these distances:
24 9 0.13
25 5 0.07
26 9 0.13
27 20 0.29
28 27 0.39
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (27 bp):
TAATAATTATAATTAAATATTAATTAT
Found at i:24730671 original size:27 final size:25
Alignment explanation
Indices: 24730629--24730696 Score: 66
Period size: 27 Copynumber: 2.6 Consensus size: 25
24730619 ATCCAAATTG
*
24730629 TATTAAATAATAAATAT-TTATTATT
1 TATTAAATAATAAATATAATATT-TT
*
24730654 TATTATAATTAATTAATATAATATTTT
1 TATTA-AA-TAATAAATATAATATTTT
24730681 TATTAATATAAATAAA
1 TATTAA-AT-AATAAA
24730697 CATTATTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
25 5 0.14
26 4 0.11
27 22 0.63
28 4 0.11
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
TATTAAATAATAAATATAATATTTT
Found at i:24730920 original size:26 final size:26
Alignment explanation
Indices: 24730848--24730922 Score: 82
Period size: 26 Copynumber: 2.8 Consensus size: 26
24730838 ACTTTATTCC
*
24730848 TAATATTATTA-TA-AATAATAATAA
1 TAATATTATTATTATTATAATAATAA
24730872 TCAAATATTATTATTAAATTTATAATAATAA
1 T--AATATTATTATT--A-TTATAATAATAA
24730903 TAATATTATTATTATTATAA
1 TAATATTATTATTATTATAA
24730923 GACTATTTGA
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
24 1 0.02
26 16 0.37
27 2 0.05
29 13 0.30
31 11 0.26
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (26 bp):
TAATATTATTATTATTATAATAATAA
Found at i:24731558 original size:17 final size:17
Alignment explanation
Indices: 24731511--24731563 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
24731501 TTAATATAAT
*
24731511 AATATATAATCATTA-A
1 AATATATAATAATTATA
*
24731527 TAATTTCATAA-AATTATA
1 -AATAT-ATAATAATTATA
24731545 AATATATAATAATTATA
1 AATATATAATAATTATA
24731562 AA
1 AA
24731564 CTATTAAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
16 4 0.13
17 21 0.70
18 5 0.17
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.40
Consensus pattern (17 bp):
AATATATAATAATTATA
Found at i:24731723 original size:15 final size:17
Alignment explanation
Indices: 24731698--24731743 Score: 60
Period size: 15 Copynumber: 2.8 Consensus size: 17
24731688 AATTTAAAGT
*
24731698 ATATTAAATTTTTAAT-
1 ATATTTAATTTTTAATA
*
24731714 AT-TTTCATTTTTAATA
1 ATATTTAATTTTTAATA
24731730 ATATTTAATTTTTA
1 ATATTTAATTTTTA
24731744 CTTAGTTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
15 11 0.44
16 4 0.16
17 10 0.40
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (17 bp):
ATATTTAATTTTTAATA
Found at i:24731742 original size:18 final size:15
Alignment explanation
Indices: 24731704--24731743 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 15
24731694 AAGTATATTA
24731704 AATTTTTAATATTTT
1 AATTTTTAATATTTT
*
24731719 CATTTTTAATAATATTT
1 AATTTTTAAT-AT-TTT
24731736 AATTTTTA
1 AATTTTTA
24731744 CTTAGTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 9 0.43
16 2 0.10
17 10 0.48
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
AATTTTTAATATTTT
Found at i:24732148 original size:179 final size:178
Alignment explanation
Indices: 24731843--24732259 Score: 613
Period size: 179 Copynumber: 2.3 Consensus size: 178
24731833 TAATTATTTG
* * * *
24731843 AAATTATTAAATTAATTAATATTCCAAAATTTAATAAGTAAGAATTTAAAAAATAAATTTATTTT
1 AAATAATTAAATTTATTAATATTCAAAAATTTAATAAGTAAAAATTTAAAAAATAAATTTATTTT
* * * *
24731908 TTGAACATGTTCGAATAGTTCTAACTATTTGAACAATTATTTATTTCAAATAGTTATGACCTTTT
66 CTGAACATGTTCAAATAGATCTAACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTT
**
24731973 GTTTTGTGATAAACCAATTGTTTCTATCCATACAAGCTTATTTTGAATA
131 GTTTTGTGATAAACCAATTGTTTCTATCCATACAAGCTTA-TTCAAATA
*
24732022 AAATAATTAAATTTATTAATATTCAAAAATTTAATAAGTAAAAATTTGAAAAATAAATTTATTTT
1 AAATAATTAAATTTATTAATATTCAAAAATTTAATAAGTAAAAATTTAAAAAATAAATTTATTTT
*
24732087 CTGAACATGTTCAAATAGATCTAACTATTTGAATAATTATCTATTTCAAATAGTTATGACCTTTT
66 CTGAACATGTTCAAATAGATCTAACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTT
* * * *
24732152 GTTTTGTGATGAACCAATTGTTTCTGTCTATATAAGCTTATTCAAATA
131 GTTTTGTGATAAACCAATTGTTTCTATCCATACAAGCTTATTCAAATA
* *
24732200 AAATAA-TACTAATTTAATAATATTCCAACAA-TTAATAAGTAAAATATTTAAAAAATAAAT
1 AAATAATTA--AATTTATTAATATT-CAAAAATTTAATAAGTAAAA-ATTTAAAAAATAAAT
24732260 ATGTCTGAAC
Statistics
Matches: 215, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
177 2 0.01
178 12 0.06
179 182 0.85
180 19 0.09
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.41
Consensus pattern (178 bp):
AAATAATTAAATTTATTAATATTCAAAAATTTAATAAGTAAAAATTTAAAAAATAAATTTATTTT
CTGAACATGTTCAAATAGATCTAACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTT
GTTTTGTGATAAACCAATTGTTTCTATCCATACAAGCTTATTCAAATA
Found at i:24732322 original size:149 final size:150
Alignment explanation
Indices: 24732128--24732409 Score: 354
Period size: 150 Copynumber: 1.9 Consensus size: 150
24732118 AATAATTATC
* * * * * *
24732128 TATTTCAAATAGTTATGACCTTTTGTTTTGTGATGAACCAATTGTTTCT-GTCTATATAAGCTTA
1 TATTTCAAATAGTTATAACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTC-ATACAAGCTTA
*
24732192 TTC-AAATAAAATAATACTAATTTAATAATATTCCAAC-AATTAATAAGTAAAATATTTAAAAAA
65 TTCAAAATAAAATAATACTAATTTAATAATATT-CAACAAATTAATAAGTAAAAGATTTAAAAAA
24732255 TAAATATGTCTGAACAATTTTT
129 TAAATATGTCTGAACAATTTTT
* * * * *
24732277 TATTTCTAATCGTTATAATCTTTTGTTTTGTCATAAAACAGTTGTTTCTATTCATACAAGTTTAT
1 TATTTCAAATAGTTATAACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTAT
* ** ** * *
24732342 TCAAAATAAAATAATACTACTTTTTTAATATTTTACAAATTAATAGGTAAGAGATTTAAAAAATA
66 TCAAAATAAAATAATACTAATTTAATAATATTCAACAAATTAATAAGTAAAAGATTTAAAAAATA
24732407 AAT
131 AAT
24732410 CTGTTTATCG
Statistics
Matches: 111, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
149 55 0.50
150 56 0.50
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (150 bp):
TATTTCAAATAGTTATAACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTAT
TCAAAATAAAATAATACTAATTTAATAATATTCAACAAATTAATAAGTAAAAGATTTAAAAAATA
AATATGTCTGAACAATTTTT
Found at i:24732408 original size:150 final size:149
Alignment explanation
Indices: 24732128--24732409 Score: 352
Period size: 149 Copynumber: 1.9 Consensus size: 149
24732118 AATAATTATC
* * * * *
24732128 TATTTCAAATAGTTATGACCTTTTGTTTTGTGATGAACCAATTGTTTCTGTCTATATAAGCTTAT
1 TATTTCAAATAGTTATAACCTTTTGTTTTGTCATAAAACAATTGTTTCTGTCTATACAAGCTTAT
*
24732193 TCAAATAAAATAATACTAATTTAATAATATTCCAACAATTAATAAGTAAAATATTTAAAAAATAA
66 TCAAATAAAATAATACTAATTTAATAATATTCCAACAATTAATAAGTAAAAGATTTAAAAAATAA
24732258 ATATGTCTGAACAATTTTT
131 ATATGTCTGAACAATTTTT
* * * * * *
24732277 TATTTCTAATCGTTATAATCTTTTGTTTTGTCATAAAACAGTTGTTTCTAT-TCATACAAGTTTA
1 TATTTCAAATAGTTATAACCTTTTGTTTTGTCATAAAACAATTGTTTCTGTCT-ATACAAGCTTA
* ** ** * *
24732341 TTCAAAATAAAATAATACTACTTTTTTAATATT-TTACAAATTAATAGGTAAGAGATTTAAAAAA
65 TTC-AAATAAAATAATACTAATTTAATAATATTCCAAC-AATTAATAAGTAAAAGATTTAAAAAA
24732405 TAAAT
128 TAAAT
24732410 CTGTTTATCG
Statistics
Matches: 111, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
148 1 0.01
149 56 0.50
150 54 0.49
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (149 bp):
TATTTCAAATAGTTATAACCTTTTGTTTTGTCATAAAACAATTGTTTCTGTCTATACAAGCTTAT
TCAAATAAAATAATACTAATTTAATAATATTCCAACAATTAATAAGTAAAAGATTTAAAAAATAA
ATATGTCTGAACAATTTTT
Found at i:24732794 original size:12 final size:12
Alignment explanation
Indices: 24732750--24732787 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
24732740 TATAATGGTA
*
24732750 ATTATAAATAAT
1 ATTATAATTAAT
24732762 -TTATAATTAAT
1 ATTATAATTAAT
24732773 ATTATAATTAAT
1 ATTATAATTAAT
24732785 ATT
1 ATT
24732788 GTTATTATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 10 0.42
12 14 0.58
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
ATTATAATTAAT
Found at i:24732878 original size:14 final size:14
Alignment explanation
Indices: 24732838--24732885 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
24732828 AAATAAGTTA
24732838 ATTATAATTTATAAT
1 ATTATAA-TTATAAT
*
24732853 AACTATAA-TATAAT
1 -ATTATAATTATAAT
*
24732867 ATTATAATTATATT
1 ATTATAATTATAAT
24732881 ATTAT
1 ATTAT
24732886 TTATAATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 6 0.21
14 16 0.57
16 6 0.21
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTATAATTATAAT
Found at i:24733445 original size:12 final size:13
Alignment explanation
Indices: 24733430--24733462 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
24733420 TAAATAATGT
24733430 TATAATAAT-AGA
1 TATAATAATAAGA
*
24733442 TATAATAATAAGC
1 TATAATAATAAGA
24733455 TATAATAA
1 TATAATAA
24733463 AATAATAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (13 bp):
TATAATAATAAGA
Found at i:24733555 original size:21 final size:21
Alignment explanation
Indices: 24733531--24733590 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 21
24733521 TAATTATACC
*
24733531 TAATATTGATATTATTATTTG
1 TAATATTGATATTATTATTTA
* *
24733552 TAAT-CTGTATATTAATTAGTTA
1 TAATATTG-ATATT-ATTATTTA
*
24733574 TAATATT-ATTTTATTAT
1 TAATATTGATATTATTAT
24733591 AATATAGATA
Statistics
Matches: 30, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
20 6 0.20
21 13 0.43
22 10 0.33
23 1 0.03
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (21 bp):
TAATATTGATATTATTATTTA
Found at i:24735507 original size:24 final size:25
Alignment explanation
Indices: 24735473--24735522 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
24735463 AAATTATGAC
* *
24735473 AATTTATAATTA-ATATTTATTATA
1 AATTTAAAATTAGATATTTATAATA
*
24735497 AATTTAAAATTAGTTATTTATAATA
1 AATTTAAAATTAGATATTTATAATA
24735522 A
1 A
24735523 TTATATTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (25 bp):
AATTTAAAATTAGATATTTATAATA
Found at i:24735701 original size:13 final size:13
Alignment explanation
Indices: 24735670--24735719 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
24735660 TTATTATTTT
*
24735670 ATATTAATTATAAA
1 ATATTAATTA-ATA
* *
24735684 TATATTTATTTATA
1 -ATATTAATTAATA
24735698 ATATTAATTAATA
1 ATATTAATTAATA
24735711 ATATTAATT
1 ATATTAATT
24735720 GTTTTATAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
13 20 0.67
14 2 0.07
15 8 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATATTAATTAATA
Found at i:24736429 original size:35 final size:36
Alignment explanation
Indices: 24736365--24736436 Score: 87
Period size: 35 Copynumber: 2.0 Consensus size: 36
24736355 TATATTTTAT
* *
24736365 AATTATAGTATTATTAATACAATTTACAATTA-ATA
1 AATTATAATATTATTAATACAATTAACAATTATATA
24736400 AATTATAAT-TTATTAATTA-ATATTAACAATTATATA
1 AATTATAATATTATTAA-TACA-ATTAACAATTATATA
24736436 A
1 A
24736437 CAATTAAATG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
34 8 0.25
35 20 0.62
36 4 0.12
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.44
Consensus pattern (36 bp):
AATTATAATATTATTAATACAATTAACAATTATATA
Found at i:24736640 original size:8 final size:9
Alignment explanation
Indices: 24736602--24736668 Score: 66
Period size: 8 Copynumber: 7.2 Consensus size: 9
24736592 ATTATGTAAG
24736602 ATTATATTGA
1 ATTATATT-A
24736612 ATTATATTA
1 ATTATATTA
*
24736621 AATATATTA
1 ATTATATTA
24736630 ATTAT-TTA
1 ATTATATTA
24736638 ATTATAATTTA
1 ATTAT-A-TTA
24736649 ATTTATATTA
1 A-TTATATTA
*
24736659 AAT-TATTA
1 ATTATATTA
24736667 AT
1 AT
24736669 AAATAGTAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
8 14 0.29
9 14 0.29
10 12 0.24
11 5 0.10
12 4 0.08
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (9 bp):
ATTATATTA
Found at i:24736685 original size:33 final size:29
Alignment explanation
Indices: 24736623--24736686 Score: 74
Period size: 33 Copynumber: 2.1 Consensus size: 29
24736613 TTATATTAAA
* *
24736623 TATATTAATTATTTAATTATAATTTAATT
1 TATATTAATTATTTAAATATAATTAAATT
24736652 TATATTAAATTATTAATAAATAGTAATTAAATT
1 TATATT-AATTATT--TAAATA-TAATTAAATT
24736685 TA
1 TA
24736687 ATAATAGTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 6 0.21
30 7 0.24
32 5 0.17
33 11 0.38
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (29 bp):
TATATTAATTATTTAAATATAATTAAATT
Found at i:24736685 original size:38 final size:38
Alignment explanation
Indices: 24736613--24736688 Score: 102
Period size: 38 Copynumber: 2.0 Consensus size: 38
24736603 TTATATTGAA
* *
24736613 TTATATTAAATATATTAATTATTTAATTATAATTTAAT
1 TTATATTAAATATATTAATAATGTAATTATAATTTAAT
24736651 TTATATTAAAT-TATTAATAAATAGTAATTA-AATTTAAT
1 TTATATTAAATATATTAAT-AAT-GTAATTATAATTTAAT
24736689 AATAGTGTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
37 7 0.21
38 21 0.62
39 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (38 bp):
TTATATTAAATATATTAATAATGTAATTATAATTTAAT
Found at i:24737209 original size:17 final size:17
Alignment explanation
Indices: 24737177--24737211 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
24737167 TTAATTTTTA
24737177 AAATAATTATTATAATT
1 AAATAATTATTATAATT
24737194 AAAT-ATTATTATTAATT
1 AAATAATTATTA-TAATT
24737211 A
1 A
24737212 TTATTTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AAATAATTATTATAATT
Found at i:24737216 original size:13 final size:13
Alignment explanation
Indices: 24737180--24737216 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
24737170 ATTTTTAAAA
*
24737180 TAATTATTATAAT
1 TAATTATTATTAT
*
24737193 TAAATATTATTAT
1 TAATTATTATTAT
24737206 TAATTATTATT
1 TAATTATTATT
24737217 TATATAACTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TAATTATTATTAT
Found at i:24738504 original size:21 final size:21
Alignment explanation
Indices: 24738434--24738505 Score: 60
Period size: 21 Copynumber: 3.4 Consensus size: 21
24738424 TTAATAGTTT
24738434 ATAATAATTTAAT-ACTAATAA
1 ATAATAATTTAATAACTAAT-A
* * *
24738455 ATATTAACTT-ATATAC-AAGTT
1 ATAATAATTTAATA-ACTAA-TA
*
24738476 ATACTAATTTAATAACTAATA
1 ATAATAATTTAATAACTAATA
24738497 ATAATAATT
1 ATAATAATT
24738506 ATTATTATTA
Statistics
Matches: 39, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
20 2 0.05
21 29 0.74
22 8 0.21
ACGTcount: A:0.51, C:0.07, G:0.01, T:0.40
Consensus pattern (21 bp):
ATAATAATTTAATAACTAATA
Found at i:24738573 original size:20 final size:20
Alignment explanation
Indices: 24738548--24738585 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
24738538 AATTTATACT
*
24738548 ATTTAATTAATAATTAATAA
1 ATTTAAATAATAATTAATAA
*
24738568 ATTTAAATATTAATTAAT
1 ATTTAAATAATAATTAAT
24738586 TGAATATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTTAAATAATAATTAATAA
Found at i:24738766 original size:17 final size:17
Alignment explanation
Indices: 24738746--24738804 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
24738736 ATTTAATAAT
24738746 TAATTAAATAGATTTTA
1 TAATTAAATAGATTTTA
*
24738763 TAATTATATA-ATTGTTA
1 TAATTAAATAGATT-TTA
* *
24738780 TAATTGAATAAGTTTTTA
1 TAATTAAAT-AGATTTTA
*
24738798 TTATTAA
1 TAATTAA
24738805 TATAATATTT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
16 3 0.09
17 19 0.58
18 9 0.27
19 2 0.06
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (17 bp):
TAATTAAATAGATTTTA
Found at i:24738931 original size:33 final size:31
Alignment explanation
Indices: 24738889--24738977 Score: 79
Period size: 34 Copynumber: 2.6 Consensus size: 31
24738879 AGATTATAAG
*
24738889 TTATAATAATAATTTAATATTATTATAATCTAAA
1 TTAT-ATAATAATTTAATATTACTAT-ATC-AAA
* *
24738923 TTATATAATTAATTTATATAATACTATTTCAAA
1 TTATATAA-TAATTTA-ATATTACTATATCAAA
24738956 TTATTATTATATAATTTAATAT
1 TTA-TA-TA-ATAATTTAATAT
24738978 ATTCAATTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
33 10 0.22
34 18 0.39
35 17 0.37
36 1 0.02
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (31 bp):
TTATATAATAATTTAATATTACTATATCAAA
Found at i:24738941 original size:13 final size:13
Alignment explanation
Indices: 24738897--24738944 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 13
24738887 AGTTATAATA
24738897 ATAATTTAATATTATT
1 ATAA-TTAAT-TTA-T
*
24738913 ATAATCTAAATTAT
1 ATAAT-TAATTTAT
24738927 ATAATTAATTTAT
1 ATAATTAATTTAT
24738940 ATAAT
1 ATAAT
24738945 ACTATTTCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
13 12 0.41
14 6 0.21
15 4 0.14
16 7 0.24
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (13 bp):
ATAATTAATTTAT
Found at i:24738978 original size:49 final size:50
Alignment explanation
Indices: 24738890--24738991 Score: 113
Period size: 48 Copynumber: 2.1 Consensus size: 50
24738880 GATTATAAGT
*
24738890 TATAATAATAATTTAATATTATTATAATCTAAATTATATAATT-AA-TTTA
1 TATAATAATAATTTAATATTATTATAATATAAATTATAT-ATTCAATTTTA
* * *
24738939 TATAATACT-ATTTCAA-ATTATTATTATATAATTTAATATATTCAATTTTA
1 TATAATAATAATTT-AATATTATTATAATATAAATT-ATATATTCAATTTTA
24738989 TAT
1 TAT
24738992 TTATTAATAC
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
48 22 0.49
49 16 0.36
50 7 0.16
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (50 bp):
TATAATAATAATTTAATATTATTATAATATAAATTATATATTCAATTTTA
Found at i:24740978 original size:12 final size:12
Alignment explanation
Indices: 24740944--24740978 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
24740934 AATAATATTA
*
24740944 TTAATTAGTAGT
1 TTAATTAATAGT
24740956 TTAATTAAATAGT
1 TTAATT-AATAGT
24740969 TTAATTAATA
1 TTAATTAATA
24740979 TTCTAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (12 bp):
TTAATTAATAGT
Found at i:24742013 original size:22 final size:22
Alignment explanation
Indices: 24741988--24742046 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
24741978 AAATTACTAT
* *
24741988 TATTAATTAA-AATTATTAATTA
1 TATTAATTAATAATTAAT-ATAA
* *
24742010 TATTTATTAATAATAAATATAA
1 TATTAATTAATAATTAATATAA
24742032 TATTAATTAATAATT
1 TATTAATTAATAATT
24742047 GTATTTAAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
22 25 0.83
23 5 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TATTAATTAATAATTAATATAA
Found at i:24742081 original size:13 final size:13
Alignment explanation
Indices: 24742063--24742087 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24742053 AAGATTTATT
24742063 ATAAAATTATTAG
1 ATAAAATTATTAG
24742076 ATAAAATTATTA
1 ATAAAATTATTA
24742088 ATATTCTACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
ATAAAATTATTAG
Found at i:24742657 original size:177 final size:175
Alignment explanation
Indices: 24742257--24742812 Score: 535
Period size: 177 Copynumber: 3.1 Consensus size: 175
24742247 AAATGGTTAA
* * * * * * *
24742257 GACTATTAGAATAATTATATACTTCAAATCGTTTTGACCATTTT-TTAGTTATAAAACAGTTGTT
1 GACTATTTGAATAATTATCTATTTCAAATCGTTTTGACC-TTTTATTTGTCATAAAACAATTATT
* * ** **
24742321 TCAATTCATACAAGCTTATTCAGAATAAAATTAATACTAATTTATTAACGTTTGGAAAATTAATA
65 TCAATTAATACAAGCTTATT-GGAATAAAA-TAATACTAATTTATTAATATTTCAAAAATTAATA
* * * *
24742386 AGAAAGAGATTTAAAAAATAAATTTGTTTGCCGAACAAGTTCAAATAGTTAT
128 AG--A-A-ATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAATTAT
* * * * * * *
24742438 TATTATTTGAACAATTATCTATTTAAAAACGTTATAACCTTTTAATTTGTCATAAAACAATTATT
1 GACTATTTGAATAATTATCTATTTCAAATCGTTTTGACCTTTT-ATTTGTCATAAAACAATTATT
* * **
24742503 TCAATTAATACAAGCTTAGATGGAATAAAATAATATTAATTTATTAATATTTCCTAAATTAATAA
65 TCAATTAATACAAGCTTA-TTGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAA
*
24742568 GAAATTTAAAAAATAAATATGTTTACCAAATC-AGTTAAAATAATTAT
129 GAAATTTAAAAAATAAATATGTTTACCAAA-CAAGTTCAAATAATTAT
* * ** *
24742615 GGCCATTTGAATAATTATCTATTTCAAATTATTTTGACCTTTTATTTTGTCATAATACAATTATT
1 GACTATTTGAATAATTATCTATTTCAAATCGTTTTGACCTTTTA-TTTGTCATAAAACAATTATT
* * * *
24742680 T--TTTATCATACAAGCTTATTTGAAATAAAATAATACTAATTGATTAATATTTCAAAAAAATAG
65 TCAATTA--ATACAAGCTTA-TTGGAATAAAATAATACTAATTTATTAATATTTC-AAAAATTA-
* * * * * *
24742743 GTAACAGATTTAAACAATAAATCTGTTTACCAAACTAGTTCAAATAATTAT
125 ATAAGAAATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAATTAT
*
24742794 GACTATTTGAAAAATTATC
1 GACTATTTGAATAATTATC
24742813 AATAATTAAT
Statistics
Matches: 307, Mismatches: 58, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
175 3 0.01
176 1 0.00
177 130 0.42
178 8 0.03
179 60 0.20
180 4 0.01
181 59 0.19
182 41 0.13
183 1 0.00
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (175 bp):
GACTATTTGAATAATTATCTATTTCAAATCGTTTTGACCTTTTATTTGTCATAAAACAATTATTT
CAATTAATACAAGCTTATTGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGA
AATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAATTAT
Found at i:24742900 original size:17 final size:19
Alignment explanation
Indices: 24742878--24742913 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
24742868 TAATAACTAA
24742878 TTATTAAAA-AA-TTATAT
1 TTATTAAAACAATTTATAT
24742895 TTATTAAAACAATTTATAT
1 TTATTAAAACAATTTATAT
24742914 ATTTATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 2 0.12
19 6 0.35
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
TTATTAAAACAATTTATAT
Found at i:24742993 original size:14 final size:13
Alignment explanation
Indices: 24742967--24743055 Score: 55
Period size: 13 Copynumber: 6.9 Consensus size: 13
24742957 TTATAATTTG
*
24742967 ATTATAAATTAAT
1 ATTATATATTAAT
24742980 ATTGATATATTAAT
1 ATT-ATATATTAAT
24742994 -TTAATTATATATAAT
1 ATT-A-TATAT-TAAT
*
24743009 AATATA-ATTAAT
1 ATTATATATTAAT
24743021 A-T-TATATTAAT
1 ATTATATATTAAT
* *
24743032 AATA-ATTTTATAT
1 ATTATATATTA-AT
24743045 ATTAT-TATTAA
1 ATTATATATTAA
24743056 ATAATATGTA
Statistics
Matches: 61, Mismatches: 6, Indels: 19
0.71 0.07 0.22
Matches are distributed among these distances:
10 2 0.03
11 8 0.13
12 12 0.20
13 17 0.28
14 16 0.26
15 5 0.08
16 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (13 bp):
ATTATATATTAAT
Found at i:24743016 original size:18 final size:18
Alignment explanation
Indices: 24742984--24743048 Score: 76
Period size: 18 Copynumber: 3.4 Consensus size: 18
24742974 ATTAATATTG
*
24742984 ATATATTAATTTAATTAT
1 ATATATTAATATAATTAT
*
24743002 ATATAATAATATAATTAAT
1 ATATATTAATATAATT-AT
*
24743021 ATTATATTAATAATAATTTT
1 A-TATATTAAT-ATAATTAT
24743041 ATATATTA
1 ATATATTA
24743049 TTATTAAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
18 14 0.35
19 10 0.25
20 10 0.25
21 6 0.15
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATATATTAATATAATTAT
Found at i:24743537 original size:21 final size:20
Alignment explanation
Indices: 24743506--24743569 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 20
24743496 ATTCATGTTA
24743506 ATATTAT-AATTATTACTAAT
1 ATATTATAAATTATTA-TAAT
24743526 ATATTATAAATT-TATATAAT
1 ATATTATAAATTAT-TATAAT
24743546 AATATTATATAATTA-TATAAT
1 -ATATTATA-AATTATTATAAT
24743567 ATA
1 ATA
24743570 AAATTATATT
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
20 15 0.38
21 20 0.51
22 4 0.10
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
ATATTATAAATTATTATAAT
Found at i:24743547 original size:13 final size:13
Alignment explanation
Indices: 24743537--24743570 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
24743527 TATTATAAAT
24743537 TTATATAATAATA
1 TTATATAATAATA
*
24743550 TTATATAATTATA
1 TTATATAATAATA
*
24743563 TAATATAA
1 TTATATAA
24743571 AATTATATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TTATATAATAATA
Found at i:24743570 original size:23 final size:23
Alignment explanation
Indices: 24743510--24743578 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 23
24743500 ATGTTAATAT
*
24743510 TATAATTAT-TACTA-ATATATTA
1 TATAATTATATAATATA-ATATTA
24743532 TA-AATT-TAT-ATAATAATATTA
1 TATAATTATATAAT-ATAATATTA
*
24743553 TATAATTATATAATATAAAATTA
1 TATAATTATATAATATAATATTA
24743576 TAT
1 TAT
24743579 TATATTACAT
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
20 2 0.05
21 14 0.36
22 7 0.18
23 14 0.36
24 2 0.05
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (23 bp):
TATAATTATATAATATAATATTA
Found at i:24743590 original size:15 final size:14
Alignment explanation
Indices: 24743537--24743591 Score: 51
Period size: 15 Copynumber: 3.9 Consensus size: 14
24743527 TATTATAAAT
*
24743537 TTATA-TAATAATA
1 TTATATTAATTATA
24743550 TTATA-TAATTATA
1 TTATATTAATTATA
* *
24743563 TAATATAAAATTATA
1 TTATAT-TAATTATA
24743578 TTATATTACATTAT
1 TTATATTA-ATTAT
24743592 TAAATATTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
13 16 0.47
14 1 0.03
15 17 0.50
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (14 bp):
TTATATTAATTATA
Found at i:24744293 original size:181 final size:181
Alignment explanation
Indices: 24744024--24744365 Score: 465
Period size: 181 Copynumber: 1.9 Consensus size: 181
24744014 CATATAGTTT
24744024 TAACTATTTGAACTAGTTCGGTAAACAATTTTATTTTTTAAATCTCTTAGTTATTAATTTTCAAA
1 TAACTATTTGAACTAGTTCGGTAAACAATTTTATTTTTTAAATCTCTTAGTTATTAATTTTCAAA
* * * * * * **
24744089 ATATTATTAGATTAGTTTTATTTTATTTCAAATAAGCTTGTATGAAT-AGAAATAATTATTTTAT
66 AGATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATG-ATCAAAAACAATTATCATAT
* *
24744153 GACAAAACAAAAGGTTATAACAATTTGAAATATACAACTGCTCTAATAGTCA
130 GACAAAACAAAAGGTAAGAACAATTTGAAATATACAACTGCTCTAATAGTCA
* * ** **
24744205 TAACTATTTGAATTGGTTTTGTAAACAGA-TTTATTTTTTAAATCTCTTACG-TATTAATTTTTG
1 TAACTATTTGAACTAGTTCGGTAAACA-ATTTTATTTTTTAAATCTCTTA-GTTATTAATTTTCA
* *
24744268 AAAGATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGATCAAAAACAATTGTCATA
64 AAAGATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGATCAAAAACAATTATCATA
*
24744333 TGACCAAACAAAAGGTAAGAACAATTTGAAATA
129 TGACAAAACAAAAGGTAAGAACAATTTGAAATA
24744366 GATAATTATT
Statistics
Matches: 139, Mismatches: 19, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
180 2 0.01
181 135 0.97
182 2 0.01
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (181 bp):
TAACTATTTGAACTAGTTCGGTAAACAATTTTATTTTTTAAATCTCTTAGTTATTAATTTTCAAA
AGATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGATCAAAAACAATTATCATATG
ACAAAACAAAAGGTAAGAACAATTTGAAATATACAACTGCTCTAATAGTCA
Found at i:24744396 original size:181 final size:180
Alignment explanation
Indices: 24744024--24744434 Score: 457
Period size: 181 Copynumber: 2.3 Consensus size: 180
24744014 CATATAGTTT
* *
24744024 TAACTATTTGAACTAGTTCGGTAAACAATTTTATTTTTTAAATCTCTTAGTTATTAATTTTCAAA
1 TAACTATTTGAACTAATTTGGTAAACAA-TTTATTTTTTAAATCTCTTAGTTATTAATTTTCAAA
* * * * * * **
24744089 ATATTATTAGATTAGTTTTATTTTATTTCAAATAAGCTTGTATGAATAGAAATAATTATTTTATG
65 AGATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAATAAAAACAATTATCATATG
* * * * * *
24744154 ACAAAACAAAAGGTTATAACAATTTGAAATATACAACTGCTCTAATAGTCA
130 ACAAAACAAAAGGTAAGAACAATTTGAAATAGACAACTACTCAAATAGCCA
* ** * **
24744205 TAACTATTTGAATTGGTTTTGTAAACAGATTTATTTTTTAAATCTCTTACG-TATTAATTTTTGA
1 TAACTATTTGAACTAATTTGGTAAACA-ATTTATTTTTTAAATCTCTTA-GTTATTAATTTTCAA
* *
24744269 AAGATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATG-ATCAAAAACAATTGTCATA
64 AAGATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAAT-AAAAACAATTATCATA
* * * * * *
24744333 TGACCAAACAAAAGGTAAGAACAATTTGAAATAGATAATTATTGAAATGGCCA
128 TGACAAAACAAAAGGTAAGAACAATTTGAAATAGACAACTACTCAAATAGCCA
* * * *
24744386 TAATTATTTGAACTAATTTGGTAAACATATTCACTTTTTAAATCACTTA
1 TAACTATTTGAACTAATTTGGTAAACA-ATTTATTTTTTAAATCTCTTA
24744435 TTTGAATTTG
Statistics
Matches: 190, Mismatches: 37, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
180 2 0.01
181 186 0.98
182 2 0.01
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.41
Consensus pattern (180 bp):
TAACTATTTGAACTAATTTGGTAAACAATTTATTTTTTAAATCTCTTAGTTATTAATTTTCAAAA
GATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAATAAAAACAATTATCATATGA
CAAAACAAAAGGTAAGAACAATTTGAAATAGACAACTACTCAAATAGCCA
Found at i:24744621 original size:224 final size:224
Alignment explanation
Indices: 24744209--24744658 Score: 503
Period size: 224 Copynumber: 2.0 Consensus size: 224
24744199 TAGTCATAAC
* * * **
24744209 TATTTGAATTGGTTTTGTAAACAGATTTATTTTTTAAATCTCTTACGTATTAATTTTTGAAAGAT
1 TATTTGAATTGGTTTAGTAAACAGATTTATTTTTTAAATCTCTTACATATGAATTTTCCAAAGAT
* * *
24744274 TAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGATCAAAAACAATTGTCATATGACCA
66 TAATAAATTAGTATTAATTTATTTCGAATAAACTTGTATGAACAAAAACAATTGTCATATGACCA
* * * ** *
24744339 AACAAAAGGTAAGAACAATTTGAAATAGATAATTATTGAAATGGCCATAATTATTTGAACTAATT
131 AACAAAAGATAAGAACAATATGAAATAGATAATTATTCAAATAACCATAATCATTTGAACTAATT
* *
24744404 TGGTAAACATATTCACTTTTTAAATCACT
196 TAGTAAACAAATTCACTTTTTAAATCACT
* * *
24744433 TATTTGAATTTGTTTAGTAAATAGATTTATTTTTTTAAATCTCTTTCATATGAATTTTCCAAATG
1 TATTTGAATTGGTTTAGTAAACAGATTTA-TTTTTTAAATCTCTTACATATGAATTTTCCAAA-G
* * **
24744498 -TTAATAAATTAGTGTTAATTTA-TTCTGAATAAACTTGT-TGAACTAAAACAATTGTTTTATGA
64 ATTAATAAATTAGTATTAATTTATTTC-GAATAAACTTGTATGAACAAAAACAATTGTCATATGA
* * * ** * *** *
24744560 CTAAATAAAATATCAA-AATGATATGAAATAGATAATTATTCTAATAATTTTAATCATTTGAATT
128 CCAAACAAAAGAT-AAGAACAATATGAAATAGATAATTATTCAAATAACCATAATCATTTGAACT
* * * *
24744624 GATTTAGTAAACAAATTTATTTTTTAAATCCCT
192 AATTTAGTAAACAAATTCACTTTTTAAATCACT
24744657 TA
1 TA
24744659 CTTATTAATT
Statistics
Matches: 185, Mismatches: 37, Indels: 8
0.80 0.16 0.03
Matches are distributed among these distances:
224 123 0.66
225 61 0.33
226 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (224 bp):
TATTTGAATTGGTTTAGTAAACAGATTTATTTTTTAAATCTCTTACATATGAATTTTCCAAAGAT
TAATAAATTAGTATTAATTTATTTCGAATAAACTTGTATGAACAAAAACAATTGTCATATGACCA
AACAAAAGATAAGAACAATATGAAATAGATAATTATTCAAATAACCATAATCATTTGAACTAATT
TAGTAAACAAATTCACTTTTTAAATCACT
Found at i:24744801 original size:180 final size:177
Alignment explanation
Indices: 24744433--24744877 Score: 430
Period size: 180 Copynumber: 2.5 Consensus size: 177
24744423 TTAAATCACT
* * * * *
24744433 TATTTGAATTTGTTTAGTAAATAGATTTATTTTTTTAAATCTCTTTCATATGAATTTTCCAAATG
1 TATTTGAA-TTGTTTAGTAAATAGATTTA-TTTTTTAAATCTCTTACTTATTAATTTTCAAAATA
* * * * ** * *
24744498 TTAATAAATTAGTGTTAATTTATTCTGAATAAACTTGTTGAACTAAAACAATTGTTTTATGACTA
64 TTATTAAATTAGTATTATTTTAATCCAAATAAACTTGTCGAACTAAAACAATTGTTTTACGACTA
* * ** * *
24744563 AATAAAATATCAAAATGATATGAAATAGATAATTATTCTAATAATTTTAA
129 AAGAAAAGATCAAAACAATATGAAATAGATAATCATTC-AATAATCTTAA
* * * *
24744613 TCATTTGAATTGATTTAGTAAACAAATTTATTTTTTAAATCCCTTACTTATTAATTTTTAAAATA
1 T-ATTTGAATTG-TTTAGTAAATAGATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATA
* *
24744678 TTATTAAATTAGTATTATTTTAATCCAAATAAGCTTGTACGAAC-AAAACAATTGTTTTACG-TT
64 TTATTAAATTAGTATTATTTTAATCCAAATAAACTTGT-CGAACTAAAACAATTGTTTTACGACT
* * *
24744741 AAAAGAAAAGGTCATAACAATTTGAAATAGATAATCATTC-ATAGAGTCTTAA
128 -AAAGAAAAGATCAAAACAATATGAAATAGATAATCATTCAATA-A-TCTTAA
* * * * * * ** *
24744793 CTATTTGAACTGGTTCG-ACATTAGATTTATTTTTTAATTTTCTTGGTTATTAAGTTTCAAAATA
1 -TATTTGAATTGTTTAGTA-AATAGATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATA
24744857 TTATTAAATTAGTATTATTTT
64 TTATTAAATTAGTATTATTTT
24744878 GTTCTAAATA
Statistics
Matches: 216, Mismatches: 41, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
178 4 0.02
179 61 0.28
180 124 0.57
181 27 0.12
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.44
Consensus pattern (177 bp):
TATTTGAATTGTTTAGTAAATAGATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATT
ATTAAATTAGTATTATTTTAATCCAAATAAACTTGTCGAACTAAAACAATTGTTTTACGACTAAA
GAAAAGATCAAAACAATATGAAATAGATAATCATTCAATAATCTTAA
Found at i:24745495 original size:16 final size:15
Alignment explanation
Indices: 24745474--24745538 Score: 53
Period size: 16 Copynumber: 4.2 Consensus size: 15
24745464 TTTTATAATT
24745474 ATAACTAATAAAATGA
1 ATAACTAATAAAAT-A
*
24745490 ATAACTATTATAAATA
1 ATAACTAATA-AAATA
24745506 ATAA-TAATAAATATA
1 ATAACTAATAAA-ATA
* *
24745521 GTTAA-TATTAAAATA
1 -ATAACTAATAAAATA
24745536 ATA
1 ATA
24745539 TAGTATTTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
14 4 0.10
15 10 0.24
16 23 0.56
17 4 0.10
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (15 bp):
ATAACTAATAAAATA
Found at i:24746112 original size:123 final size:123
Alignment explanation
Indices: 24745893--24746117 Score: 328
Period size: 123 Copynumber: 1.8 Consensus size: 123
24745883 GTAAACATAT
* * * *
24745893 AATCTCCTACTTATTAATTTTTGAAATATTAATAAACTAGTATTATTTTATTCTAGTTAGGCTTG
1 AATCTCCAACTTATTAATTTTTGAAATATTAATAAACTAATATTATTTTATTCTAGATAAGCTTG
24745958 TATGATGAACAACAATTGTTTTATGACAAAACAAAAGTTGAAAATGATTTATGTTTTA
66 TATGATGAACAACAATTGTTTTATGACAAAACAAAAGTTGAAAATGATTTATGTTTTA
* * * * *
24746016 AATCTCCAACTTCTTAATTTTTGAAATATTAATAAAGTAATATTATTTTATTTTGGATAAGCTTT
1 AATCTCCAACTTATTAATTTTTGAAATATTAATAAACTAATATTATTTTATTCTAGATAAGCTTG
*
24746081 TATGAAATG-A-AACAATTGTTTTATGATAAAACAAAAG
66 TATG--ATGAACAACAATTGTTTTATGACAAAACAAAAG
24746118 GTCATAACGA
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
123 86 0.96
124 1 0.01
125 3 0.03
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (123 bp):
AATCTCCAACTTATTAATTTTTGAAATATTAATAAACTAATATTATTTTATTCTAGATAAGCTTG
TATGATGAACAACAATTGTTTTATGACAAAACAAAAGTTGAAAATGATTTATGTTTTA
Found at i:24746842 original size:181 final size:181
Alignment explanation
Indices: 24746004--24747422 Score: 1338
Period size: 181 Copynumber: 7.9 Consensus size: 181
24745994 GTTGAAAATG
* *** * * *
24746004 ATTTATGTTTTAAATCTCCAACTTCTTAATTTTTGAAATATTAATAAAGTAATATTATTTTATTT
1 ATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
* * *
24746069 TGGATAAGCTTTTATGAA-ATGAAACAATTGTTTTATGATAAAACAAAAGGTCATAACGATTTTA
66 TGAATAAGCTTTTATGAATA-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGA
* * * ** *
24746133 CAAT-GATAATTGTTTAAATAGTCATAACTATTTAAATTTGTTTTGTAAACAG
130 -AATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAA
* * * *
24746185 ATTTATTTTTTAAATC-CTTGCTTATTAATTTTTTG-AATGTTAATAAAATAGTATTATTTTATT
1 ATTTATTTTTTAAATCTTTTACTTATTAA-TTTTTGAAATATTAATAAATTAGTATTATTTTATT
* * * * * * **
24746248 TTGAATAAGCATGTATGAATTG-AACAATTATTTTATGACTAAACAAAAGGTCAGAATTATTTGA
65 TTGAATAAGCTTTTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGA
* * * ** * *
24746312 AATAGATAATTA-TTATAATAGTCTTAACTATTTAAACTGGTTCAACAAATAC
130 AATAGATAATTATTTA-AATAGTCATAACTATTTGAACTTGTTCAGTAAACAA
* * ** * * *
24746364 ATTTATTTTTTAAATCTCTTACTTATTAATTTTT-AGAATATTATTAGTTTAGCAATATTTTACT
1 ATTTATTTTTTAAATCTTTTACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATT
** *** * * * * *
24746428 CCGAATAAG-TTTGTATGGCCAGAAATAATTGTTTTATAACAAAAC-AAAGATCATACCTATTTG
65 TTGAATAAGCTTT-TATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTG
* * * *
24746491 AGATAGATAATTATTCAAATAGTCATAACTATTTGAA-TTGGTCTGATAAACAA
129 AAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCAG-TAAACAA
* * ** *
24746544 ATATAGTTTTTAAATC---T-CTTATTAATTTTCAAAATATTAATAAATTATTATTATTTTATTT
1 ATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
* * * *
24746605 TGAGTAA-TTTTGTATGAAATA-AAATAATTGTTTTATTACAAAAC-AAAGGATCATAACGATTT
66 TGAATAAGCTTT-TATG-AATAGAAACAATTGTTTTATGACAAAACAAAAGG-TCATAACGATTT
* * ***
24746667 GAAATAAATAATTATTTAAATAGTCATAATTATTTGAACTCACTCAGTAAACAA
128 GAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAA
* *
24746721 ATTTATTTTTTAAATATTTTACTTATTAATTTTTGAAATTTTAATAAATTAGTATTATTTTATTT
1 ATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
*
24746786 TGAATAAGCTTTTATGAATAGAAACAATTGGTTTATGACAAAACAAAAGGTCATAACGATTTGAA
66 TGAATAAGCTTTTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAA
* * * * * **
24746851 ATAGATAATTGTTCAAAT-GCTTATAATTATTTTGAACATGTTCAAAAAACAA
131 ATAGATAATTATTTAAATAG-TCATAACTA-TTTGAACTTGTTCAGTAAACAA
* * * * * *
24746903 ATTTATTTTATATAT-TTTTATTTATTAATCTTTGGAATATTAGTAAATT--TATATATATTT-T
1 ATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTAT-TAT-TTTAT
* * * * * *
24746964 TTTAAATAAGCTTGTATGAATAGAAACAATTGTTTTATGGCAAAGCAAATGGTCATAACAATTTG
64 TTTGAATAAGCTTTTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTG
* ** * *
24747029 AAATAGATAATTGTTCT-AATAGTCATAACTATTTGAACTTGTTTGGTAAATAG
129 AAATAGATAATTATT-TAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAA
* * * * * * * **
24747082 ATTCAGTTTTTAAATCTCTTACTCATTAATTTTTGGAATAGTAATAAGTTAGTATTATTCCATTT
1 ATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
* * * * * * ***
24747147 CGAATAAGCCTATATGAATTGATATAATTGTTTTATGGTGAAACAAAAGGTCATAACGATTTGAA
66 TGAATAAGCTTTTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAA
* * * * ** *
24747212 ATAAATAATTATTTAGATAGTTATTACTATTTGAACTTGTTTGGTAAACAT
131 ATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAA
* * * *
24747263 ATTTATTTTTTAAATCTTTTACTTATTAATTGTTGAAATATTAATAAATTAATATTATTTTAATC
1 ATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
* ** * *
24747328 CGAATAAGCTAATATGAACA-AAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAA
66 TGAATAAGCTTTTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAA
* *
24747392 ATAAATAATTATTTCAATAGTCATAACTATT
131 ATAGATAATTATTTAAATAGTCATAACTATT
24747423 CAAAATTATT
Statistics
Matches: 1008, Mismatches: 196, Indels: 69
0.79 0.15 0.05
Matches are distributed among these distances:
176 72 0.07
177 67 0.07
178 10 0.01
179 124 0.12
180 344 0.34
181 351 0.35
182 40 0.04
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (181 bp):
ATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
TGAATAAGCTTTTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAA
ATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAA
Found at i:24747056 original size:361 final size:358
Alignment explanation
Indices: 24746004--24747422 Score: 1378
Period size: 361 Copynumber: 3.9 Consensus size: 358
24745994 GTTGAAAATG
* ** * * *
24746004 ATTTATGTTTTAAATCTCCAACTTCTTAATTTTTGAAATATTAATAAAGTAATATTATTTTATTT
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
* * * *
24746069 TGGATAAGCTTTTATGAA-ATGAAACAATTGTTTTATGATAAAACAAAAGGTCATAACGATTTTA
66 CGAATAAGCTTTTATGAATA-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGA
* * * * * *
24746133 CAAT-GATAATTGTTTAAATAGTCATAACTATTTAAATTTGTTTTG-TAAACAGATTTATTTTTT
130 -AATAGATAATTATTCAAATAGTCATAACTATTTGAACTTG-TTCGATAAACAAATTTATTTTTT
** * * * *
24746196 AAATCCTTGCTTATTAATTTTTTG-AATGTTAATAAAATAGTATTATTTTATTTTGAATAAGCAT
193 AAATTTTTACTTATTAA--TTTTGAAATATTAATAAATTA-TATTATTTTATTTTGAATAAGCTT
** * * * ** *
24746260 GTATGAATTGAACAATTATTTTATGACTAAACAAAAGGTCAGAATTATTTGAAATAGATAATTA-
255 GTATGAATAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTAT
* * * ** *
24746324 TTATAATAGTCTTAACTATTTAAACTGGTTCAACAAATAC
320 TTA-AATAGTCATAACTATTTGAACTCGTTCAGTAAATAA
* ** * * *
24746364 ATTTATTTTTTAAATCTCTTACTTATTAATTTTT-AGAATATTATTAGTTTAGCAATATTTTACT
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATT
* *** * * * * *
24746428 CCGAATAAG-TTTGTATGGCCAGAAATAATTGTTTTATAACAAAAC-AAAGATCATACCTATTTG
65 TCGAATAAGCTTT-TATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTG
* * * *
24746491 AGATAGATAATTATTCAAATAGTCATAACTATTTGAA-TTGGTCTGATAAACAAATATAGTTTTT
129 AAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTC-GATAAACAAATTTATTTTTT
* * * **
24746555 AAA--TCT-CTTATTAATTTTCAAAATATTAATAAATTATTATTATTTTATTTTGAGTAATTTTG
193 AAATTTTTACTTATTAATTTT-GAAATATTAATAAATTA-TATTATTTTATTTTGAATAAGCTTG
* *
24746617 TATGAAATAAAATAATTGTTTTATTACAAAAC-AAAGGATCATAACGATTTGAAATAAATAATTA
256 TATG-AATAAAACAATTGTTTTATGACAAAACAAAAGG-TCATAACGATTTGAAATAAATAATTA
* ** *
24746681 TTTAAATAGTCATAATTATTTGAACTCACTCAGTAAACAA
319 TTTAAATAGTCATAACTATTTGAACTCGTTCAGTAAATAA
* * *
24746721 ATTTATTTTTTAAATATTTTACTTATTAATTTTTGAAATTTTAATAAATTAGTATTATTTTATTT
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
* *
24746786 TGAATAAGCTTTTATGAATAGAAACAATTGGTTTATGACAAAACAAAAGGTCATAACGATTTGAA
66 CGAATAAGCTTTTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAA
* * * * * * *
24746851 ATAGATAATTGTTCAAAT-GCTTATAATTATTTTGAACATGTTCAAAAAACAAATTTATTTTATA
131 ATAGATAATTATTCAAATAG-TCATAACTA-TTTGAACTTGTTCGATAAACAAATTTATTTTTTA
* * * * *
24746915 TATTTTTATTTATTAATCTTTGGAATATTAGTAAATT-TATATATATTT-TTTTAAATAAGCTTG
194 AATTTTTACTTATTAAT-TTTGAAATATTAATAAATTATAT-TAT-TTTATTTTGAATAAGCTTG
* * * * * *
24746978 TATGAATAGAAACAATTGTTTTATGGCAAAGCAAATGGTCATAACAATTTGAAATAGATAATTGT
256 TATGAATA-AAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTAT
* ** *
24747043 TCT-AATAGTCATAACTATTTGAACTTGTTTGGTAAATAG
320 T-TAAATAGTCATAACTATTTGAACTCGTTCAGTAAATAA
* * * * * * **
24747082 ATTCAGTTTTTAAATCTCTTACTCATTAATTTTTGGAATAGTAATAAGTTAGTATTATTCCATTT
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
* * * * * ***
24747147 CGAATAAGCCTATATGAATTGATATAATTGTTTTATGGTGAAACAAAAGGTCATAACGATTTGAA
66 CGAATAAGCTTTTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAA
* * * * * * * *
24747212 ATAAATAATTATTTAGATAGTTATTACTATTTGAACTTGTTTGGTAAACATATTTATTTTTTAAA
131 ATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCGATAAACAAATTTATTTTTTAAA
* ** **
24747277 TCTTTTACTTATTAATTGTTGAAATATTAATAAATTAATATTATTTTAATCCGAATAAGCTAATA
196 T-TTTTACTTATTAATT-TTGAAATATTAATAAATT-ATATTATTTTATTTTGAATAAGCTTGTA
* * *
24747342 TGAACAAAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTATTTC
258 TGAATAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTATTTA
24747407 AATAGTCATAACTATT
323 AATAGTCATAACTATT
24747423 CAAAATTATT
Statistics
Matches: 854, Mismatches: 172, Indels: 65
0.78 0.16 0.06
Matches are distributed among these distances:
354 4 0.00
356 51 0.06
357 158 0.19
358 53 0.06
359 89 0.10
360 123 0.14
361 321 0.38
362 49 0.06
363 6 0.01
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (358 bp):
ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
CGAATAAGCTTTTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAA
ATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCGATAAACAAATTTATTTTTTAAA
TTTTTACTTATTAATTTTGAAATATTAATAAATTATATTATTTTATTTTGAATAAGCTTGTATGA
ATAAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTATTTAAAT
AGTCATAACTATTTGAACTCGTTCAGTAAATAA
Found at i:24747440 original size:180 final size:181
Alignment explanation
Indices: 24746004--24747446 Score: 1316
Period size: 180 Copynumber: 8.0 Consensus size: 181
24745994 GTTGAAAATG
* ** * * *
24746004 ATTTATGTTTTAAATCTCCAACTTCTTAATTTTTGAAATATTAATAAAGTAATATTATTTTATTT
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
* * * *
24746069 TGGATAAGCTTTTATGAA-ATGAAACAATTGTTTTATGATAAAACAAAAGGTCATAACGATTTTA
66 TGAATAAGCTTGTATGAATA-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGA
* * * * *
24746133 CAAT-GATAATTGTTTAAATAGTCATAACTATTTAAATTTGTTTTGTAAACAG
130 -AATAGATAATTATTTCAATAGTCATAACTATTTAAACTTGTTTGGTAAACAA
* * *
24746185 ATTTATTTTTTAAATC-CTTGCTTATTAATTTTTTG-AATGTTAATAAAATAGTATTATTTTATT
1 ATTTATTTTTTAAATCTCTTACTTATTAA-TTTTTGAAATATTAATAAATTAGTATTATTTTATT
* * * * * **
24746248 TTGAATAAGCATGTATGAATTG-AACAATTATTTTATGACTAAACAAAAGGTCAGAATTATTTGA
65 TTGAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGA
* * **** * *
24746312 AATAGATAATTATTAT-AATAGTCTTAACTATTTAAACTGGTTCAACAAATAC
130 AATAGATAATTATT-TCAATAGTCATAACTATTTAAACTTGTTTGGTAAACAA
* ** * * *
24746364 ATTTATTTTTTAAATCTCTTACTTATTAATTTTT-AGAATATTATTAGTTTAGCAATATTTTACT
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATT
** * *** * * * * *
24746428 CCGAATAAGTTTGTATGGCCAGAAATAATTGTTTTATAACAAAAC-AAAGATCATACCTATTTGA
65 TTGAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGA
* * * *
24746492 GATAGATAATTA-TTCAAATAGTCATAACTATTTGAA-TTGGTCTGATAAACAA
130 AATAGATAATTATTTC-AATAGTCATAACTATTTAAACTT-GTTTGGTAAACAA
* * ** *
24746544 ATATAGTTTTTAAA--TC-T-CTTATTAATTTTCAAAATATTAATAAATTATTATTATTTTATTT
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
* ** * *
24746605 TGAGTAATTTTGTATGAAATA-AAATAATTGTTTTATTACAAAAC-AAAGGATCATAACGATTTG
66 TGAATAAGCTTGTATG-AATAGAAACAATTGTTTTATGACAAAACAAAAGG-TCATAACGATTTG
* * * * *** **
24746668 AAATAAATAATTATTTAAATAGTCATAATTATTTGAACTCACTCAGTAAACAA
129 AAATAGATAATTATTTCAATAGTCATAACTATTTAAACTTGTTTGGTAAACAA
* * *
24746721 ATTTATTTTTTAAATATTTTACTTATTAATTTTTGAAATTTTAATAAATTAGTATTATTTTATTT
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
* *
24746786 TGAATAAGCTTTTATGAATAGAAACAATTGGTTTATGACAAAACAAAAGGTCATAACGATTTGAA
66 TGAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAA
* * * * * ****
24746851 ATAGATAATT-GTTCAA-ATGCTTATAATTATTTTGAACATGTTCAAAAAACAA
131 ATAGATAATTATTTCAATA-G-TCATAACTA-TTTAAACTTGTTTGGTAAACAA
* * * * * * *
24746903 ATTTATTTTATATAT-TTTTATTTATTAATCTTTGGAATATTAGTAAATT--TATATATATTT-T
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTAT-TAT-TTTAT
* * * * *
24746964 TTTAAATAAGCTTGTATGAATAGAAACAATTGTTTTATGGCAAAGCAAATGGTCATAACAATTTG
64 TTTGAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTG
* * * *
24747029 AAATAGATAATT-GTTCTAATAGTCATAACTATTTGAACTTGTTTGGTAAATAG
129 AAATAGATAATTATTTC-AATAGTCATAACTATTTAAACTTGTTTGGTAAACAA
* * * * * * **
24747082 ATTCAGTTTTTAAATCTCTTACTCATTAATTTTTGGAATAGTAATAAGTTAGTATTATTCCATTT
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
* * * * * * ***
24747147 CGAATAAGCCTATATGAATTGATATAATTGTTTTATGGTGAAACAAAAGGTCATAACGATTTGAA
66 TGAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAA
* * * * *
24747212 ATAAATAATTATTT-AGATAGTTATTACTATTTGAACTTGTTTGGTAAACAT
131 ATAGATAATTATTTCA-ATAGTCATAACTATTTAAACTTGTTTGGTAAACAA
* * * * *
24747263 ATTTATTTTTTAAATCTTTTACTTATTAATTGTTGAAATATTAATAAATTAATATTATTTTAATC
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
* ** * *
24747328 CGAATAAGCTAATATGAACA-AAATAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAA
66 TGAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAA
* * * *
24747392 ATAAATAATTATTTCAATAGTCATAACTATTCAAAATTATTTGGTAAACAA
131 ATAGATAATTATTTCAATAGTCATAACTATTTAAACTTGTTTGGTAAACAA
24747443 ATTT
1 ATTT
24747447 GAAATAAACT
Statistics
Matches: 1024, Mismatches: 202, Indels: 73
0.79 0.16 0.06
Matches are distributed among these distances:
176 72 0.07
177 63 0.06
178 9 0.01
179 125 0.12
180 369 0.36
181 346 0.34
182 40 0.04
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.42
Consensus pattern (181 bp):
ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT
TGAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAA
ATAGATAATTATTTCAATAGTCATAACTATTTAAACTTGTTTGGTAAACAA
Found at i:24747796 original size:181 final size:181
Alignment explanation
Indices: 24747448--24748090 Score: 659
Period size: 181 Copynumber: 3.5 Consensus size: 181
24747438 AACAAATTTG
* * * * * * ***
24747448 AAATAAACTTGTATGAATAGAAAA-AATTATTTTATGACAATACAAAAAGGTTATAGCAATTTGA
1 AAATAAGCTTATATGAACA-AAAACAATTGTTTTATGACAAAAC-AAAAGGTCATAATGATTTGA
* * * ** *
24747512 ACTAGATAATTGTTCAAATAGCCATAATTATTTGAACTTGTTTGGTAAACAGATTCATTTTTTAA
64 AATAGATAATTGTTCAAATAGTCATAATTATTTGAACTGGTAAGCTAAACAGATTCATTTTTTAA
* * * *
24747577 ATCTCTCACTTATTAATTTTTGGAATATTAATAAATTAGAATTACGTTATTCT
129 ATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGAATTACTTTATTCC
* * *
24747630 AAATAAGCTTCTATGAACAAAAACAATTGTTTTGTGAGAAAACAAAAGGTCATAATGATTTGAAA
1 AAATAAGCTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAA
* * * * *
24747695 TAGATAATTGTTCAAATAGTCATAATTTTTTGCACCGGTCAAGCTAAA-AGATACATTTTCTAAA
66 TAGATAATTGTTCAAATAGTCATAATTATTTGAACTGGT-AAGCTAAACAGATTCATTTTTTAAA
** *
24747759 TC-CATTACTTATTAATTTTCAAAATATTAATAAATTAGCATTACTTTATTCC
130 TCTC-TTACTTATTAATTTTTGAAATATTAATAAATTAGAATTACTTTATTCC
* * * * * *
24747811 AAATAAGATTATATAAATAGAAATAATTGTTTTATGATAAAACAAAAGGTCATAATGATTTGAAA
1 AAATAAGCTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAA
* * * * * * * * * * *
24747876 TAAATATTTGGTCAAATTGTTATAACTAATTGAATTGGTATGGC-AAACAAATTTATTTTTTAAA
66 TAGATAATTGTTCAAATAGTCATAATTATTTGAACTGGTA-AGCTAAACAGATTCATTTTTTAAA
* * *
24747940 TCTCTTA-TGTATTAATTTTTGAAATATTAATAAATTA-ATATTATTTTGTCCC
130 TCTCTTACT-TATTAATTTTTGAAATATTAATAAATTAGA-ATTACTTTATTCC
* * * * **
24747992 AAACAAACTTATATGAACAAAAACATTTGTTTTATGACAAAACAAAAGGTAATAACAATTTGAAA
1 AAATAAGCTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAA
* *
24748057 TAGATAATTATTCAAATAGTCATAATAATTTGAA
66 TAGATAATTGTTCAAATAGTCATAATTATTTGAA
24748091 ATAGTTTTGT
Statistics
Matches: 373, Mismatches: 80, Indels: 17
0.79 0.17 0.04
Matches are distributed among these distances:
180 6 0.02
181 330 0.88
182 37 0.10
ACGTcount: A:0.43, C:0.09, G:0.10, T:0.38
Consensus pattern (181 bp):
AAATAAGCTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAA
TAGATAATTGTTCAAATAGTCATAATTATTTGAACTGGTAAGCTAAACAGATTCATTTTTTAAAT
CTCTTACTTATTAATTTTTGAAATATTAATAAATTAGAATTACTTTATTCC
Found at i:24748094 original size:19 final size:18
Alignment explanation
Indices: 24748043--24748095 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 18
24748033 ACAAAAGGTA
*
24748043 ATAACAATTTGAAATAG-
1 ATAATAATTTGAAATAGT
* *
24748060 ATAATTA-TTCAAATAGT
1 ATAATAATTTGAAATAGT
24748077 CATAATAATTTGAAATAGT
1 -ATAATAATTTGAAATAGT
24748096 TTTGTAAACA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
16 8 0.29
17 5 0.18
18 6 0.21
19 9 0.32
ACGTcount: A:0.49, C:0.06, G:0.09, T:0.36
Consensus pattern (18 bp):
ATAATAATTTGAAATAGT
Found at i:24749047 original size:180 final size:179
Alignment explanation
Indices: 24748112--24750185 Score: 1411
Period size: 181 Copynumber: 11.6 Consensus size: 179
24748102 AACAGAATTG
* * * * * *
24748112 TTATGACTTTTTGTTTTGTAATAAAACAATTGTTTCTGTTCATACAAGGTTATTTGGATTAAAAT
1 TTATGACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAAT
* * * * * *
24748177 AATATTAATTTATTAATATTTTGACAATTAATAAGTGAAAGATTTAAAAAATAAATATGTTTACC
66 AATACTAATTTATTAATATTCTAAAAATTAATAAGT-AGAGATTTAAAAAA-AAATTTGTTTACC
* * ** *
24748242 AAACAAGTTCAAATAGTCAAAACTATTTGAATAATTATCTATTTCAAATAA
129 GAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
* * * * * * * * *
24748293 TTGTGACCTTCTATTTTGTAATAAAATAATTGTTTC-AGTTAACATAAGCTTATTTGAAATAAAA
1 TTATGACATTTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTTGAAATAAAA
* * * * * * *
24748357 TAGCT-CTAATTTAGTAATATACCAAAAATTAATGAGTAAGAGAATTAAAAAAATGAATCTGTTT
65 TA-ATACTAATTTATTAATATTCTAAAAATTAATAAGT-AGAGATTTAAAAAAA--AATTTGTTT
** * * * * *
24748421 ACTAAATAAGTTCAAATAGTTATCACTATCTAAATAATTATCTATTTCAAAACA
126 ACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
* * * * *
24748475 TTATGACAATTTGTTTTATCATAAAATAATTAG-TTCTGTTCATGCAAGCTTATTTTG-AATAAA
1 TTATGACATTTTGTTTTGTCATAAAACAATT-GTTTCTATTCATACAAGCTTA-TTTGAAATAAA
* * * * * *
24748538 ATAATA-TAAATTTATTTAA-AATCCAAAAATTAATAAATAAAAATTTAAAAAATAAATATGTTT
64 ATAATACT-AATTTA-TTAATATTCTAAAAATTAATAAGTAGAGATTTAAAAAA-AAATTTGTTT
** * **
24748601 -TTGAACACA-TTC-AATAGTTATGACTATTTGAACAATTATCTATTTCAAATTG
126 ACCGAACA-AGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
* * * * **
24748653 TTATGACAATTTGTTTTGTCATAAACCAATTATTTCTATTCATACAAACTTATTCAAAATAAAAT
1 TTATGACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAAT
** * * *
24748718 AATGTTAATTTATTAATATTTCT-AAAATTAATAAGTAAAAGATTTAAATAATAAATTTGTTTAT
66 AATACTAATTTATTAATA-TTCTAAAAATTAATAAGT-AGAGATTTAAA-AAAAAATTTGTTTAC
* * ** * * *
24748782 CGAGCAAGTTCAAATAGTCATGTTTATTTGAACAATTATATATTTCAAATCT
128 CGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
* * * *
24748834 TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCACACAAGTTTATTTGGAATAAAAT
1 TTATGACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAAT
*
24748899 AATACTAATTTATTATTATTCTAAAAATTAATAAGTTAGAGATTTAAAAAAAAATTTGTTTACCG
66 AATACTAATTTATTAATATTCTAAAAATTAATAAG-TAGAGATTTAAAAAAAAATTTGTTTACCG
* * * * * * *
24748964 AACAAGTTTAAATAGTCATGTCCATTTGAATAGTTATTTATTTAAAATCA
130 AACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
* * * ** ** *
24749014 TTATGACATTTTCTTTTATTATAAAGTAATTGTTTCTATTCATACAAAATTA-TTCAGAATAAAA
1 TTATGACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGA-AATAAAA
* ** * * *
24749078 TAATACCAATTTATTGCTATT-TCAAAAATTAAT-A--AG-GATTTAAAAATAAATGTGTTT-TC
65 TAATACTAATTTATTAATATTCT-AAAAATTAATAAGTAGAGATTTAAAAAAAAATTTGTTTACC
* * * * * * *
24749137 TAAGTAA-TTCAAATAGTTAAGACTATTAGAACAATTATCTATTCCAAATTA
129 GAA-CAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
* * * * * * * * ** *
24749188 TTTTGATATTTTGTTTAGTCAAAAAATAATTGTTTCAATTCATACATGCTTATTCGAAATGTAGT
1 TTATGACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAAT
* * * * *
24749253 AACACTAATTTATTAAAATT-TAGAAAATTAATAAG-A-A-ATTT--TAAAAAGTTCTATTTACC
66 AATACTAATTTATTAATATTCTA-AAAATTAATAAGTAGAGATTTAAAAAAAAATT-TGTTTACC
* * * * * *
24749312 AAATAAGTTCAAATAGTTATGTCTATTTGAATAATTATCTGTTTAAAATCG
129 GAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
* * * * * * **
24749363 TTATGACCTTTTATTTTATCATAAAACAATTGTTTCAATACATAAAAG-TT-TTCCCAAAATAAA
1 TTATGACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATT--TGAAATAAA
* ** * * * **
24749426 ATAATATTGCTTTATTAATATT-TCAAAAATTAAGAAGTTGGAGTTTTAAAAAATAAATCAGTTT
64 ATAATACTAATTTATTAATATTCT-AAAAATTAATAAG-TAGAGATTTAAAAAA-AAATTTGTTT
* * ** * * *
24749490 ATCAAATTA-TTCAAATAATTATGGCCATTTGAATAATTATCTATTTCAAATCA
126 ACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
* * *
24749543 TTATGA-ACTTTTGTTTTGTCATAAAACAATTATTTTTCA-TCATACAAGCCTATTT-AGAATAA
1 TTATGACA-TTTTGTTTTGTCATAAAACAATTGTTTCT-ATTCATACAAGCTTATTTGA-AATAA
* * ** *
24749605 AATAATACTAATTTACTAATATTTTCAAAAATTAATAA--A-AGATTTAAAAAGTTAATCTGTTT
63 AATAATACTAATTTATTAATATTCT-AAAAATTAATAAGTAGAGATTTAAAAA-AAAATTTGTTT
* * * * **
24749667 ACTGAACTAGTTCAAATAGTTATGACTATTTGAAGAATTATATATTTCAAATTG
126 ACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
* * * * * * *
24749721 TTATAACCTTTTGTTATCTCATAAAACAATTATTTCTATTCACACAAGTTTATTTGAAATAAAAT
1 TTATGACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAAT
* * * * * * * *
24749786 AATACCAATGTAATAATATTTTGAAAATTAATAACTAAGAGATTTAAAAAATAAATTTATTTACT
66 AATACTAATTTATTAATATTCTAAAAATTAATAAGT-AGAGATTTAAAAAA-AAATTTGTTTACC
* * * ** ** * * * *
24749851 GAACTAGTTCAAATATTTAAGGGTATATAAAACAATTCTTTATTTCAAATTA
129 GAACAAGTTCAAATAGTTATGACTAT-TTGAATAATTATCTATTTCAAATCA
* * * * * * *
24749903 TTATGACCTTTTGTTTTATCGTAAAACAATTTTTTC-ATTTCTTAGTAA-CTTATTCGAAATAAA
1 TTATGACATTTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATA-CAAGCTTATTTGAAATAAA
* * * * * * *
24749966 GTAAAACAAATTTATTAATATT-TCAAAATTTAATAAGCAAGAGATTAAAAAAACAAATTCAGTT
64 ATAATACTAATTTATTAATATTCT-AAAAATTAATAAG-TAGAGATTTAAAAAA-AAATT-TGTT
* * * * * * *
24750030 TACCTAACTAGTTTAAATAATTATCACTATTTGAACAATTATCTATTTCAAATCG
125 TACCGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
* * * * * * * * * * * *
24750085 TTATGTTC-TTTTATTTTGTCGTAAAATAAAT-TATATATAT-ATATAAGTTTGTTCGGAATAAA
1 TTATG-ACATTTTGTTTTGTCATAAAACAATTGTTTCTAT-TCATACAAGCTTATTTGAAATAAA
* * * * *
24750147 ACAATATTAATTTATTAATATTTTGAAAATTAAGAAGTA
64 ATAATACTAATTTATTAATATTCTAAAAATTAATAAGTA
24750186 AGTTATAGCA
Statistics
Matches: 1487, Mismatches: 334, Indels: 145
0.76 0.17 0.07
Matches are distributed among these distances:
173 8 0.01
174 114 0.08
175 137 0.09
176 4 0.00
177 41 0.03
178 216 0.15
179 39 0.03
180 262 0.18
181 345 0.23
182 286 0.19
183 35 0.02
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (179 bp):
TTATGACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAAT
AATACTAATTTATTAATATTCTAAAAATTAATAAGTAGAGATTTAAAAAAAAATTTGTTTACCGA
ACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
Found at i:24749805 original size:178 final size:177
Alignment explanation
Indices: 24748107--24750110 Score: 1392
Period size: 182 Copynumber: 11.2 Consensus size: 177
24748097 TTGTAAACAG
* * * * * * *
24748107 AATTGTTATGACTTTTTGTTTTGTAATAAAACAATTGTTTCTGTTCATACAAGGTTATTTGGATT
1 AATTATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAAT
* ** * *
24748172 AAAATAATATTAATTTATTAATATTTTGACAATTAATAAGTGAAAGATTTAAAAAATAAATATGT
66 AAAATAATACTAATTTATTAATATTTCAAAAATTAAT-A---AAAGATTTAAAAAATAAATCTGT
** * * ** *
24748237 TTACCAAACAAGTTCAAATAGTCAAAACTATTTGAATAATTATCTATTTCA
127 TTACTGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCA
* * * * * * * * *
24748288 AATAATTGTGACCTTCTATTTTGTAATAAAATAATTGTTTC-AGTTAACATAAGCTTATTTGAAA
1 AATTATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTTGAAA
* * ** * *
24748352 TAAAATAGCT-CTAATTTAGTAATATACCAAAAATTAATGAGTAAGAGAATTAAAAAAATGAATC
65 TAAAATA-ATACTAATTTATTAATATTTCAAAAATTAAT-A--AA-AG-ATTTAAAAAATAAATC
* * * * *
24748416 TGTTTACT-AAATAAGTTCAAATAGTTATCACTATCTAAATAATTATCTATTTCA
124 TGTTTACTGAACT-AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCA
** ** * * * *
24748470 AAACATTATGACAATTTGTTTTATCATAAAATAATTAG-TTCTGTTCATGCAAGCTTATTTTG-A
1 AATTATTATGACCTTTTGTTTTGTCATAAAACAATT-GTTTCTATTCATACAAGCTTA-TTTGAA
* * * *
24748533 ATAAAATAATA-TAAATTTATTTAA-AATCCAAAAATTAATAAATAAAAATTTAAAAAATAAATA
64 ATAAAATAATACT-AATTTA-TTAATATTTCAAAAATTAAT--A-AAAGATTTAAAAAATAAATC
* *
24748596 TGTTT-TTGAAC-ACATTC-AATAGTTATGACTATTTGAACAATTATCTATTTCA
124 TGTTTACTGAACTA-GTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCA
* ** * * * **
24748648 AATTGTTATGACAATTTGTTTTGTCATAAACCAATTATTTCTATTCATACAAACTTATTCAAAAT
1 AATTATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAAT
** * * *
24748713 AAAATAATGTTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGATTTAAATAATAAATTTGT
66 AAAATAATACTAATTTATTAATATTTC-AAAA--ATTAA-TAAAAGATTTAAAAAATAAATCTGT
* * * ** *
24748778 TTA-TCGAGCAAGTTCAAATAGTCATGTTTATTTGAACAATTATATATTTCA
127 TTACT-GAACTAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCA
* * *
24748829 AATCT-TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCACACAAGTTTATTTGGAA
1 AAT-TATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAA
* *
24748893 TAAAATAATACTAATTTATTATTA-TTCTAAAAATTAATAAGTTAGAGATTTAAAAAA-AAATTT
65 TAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAA---A-AGATTTAAAAAATAAATCT
* * * * * * * * * *
24748956 GTTTACCGAACAAGTTTAAATAGTCATGTCCATTTGAATAGTTATTTATTTAA
125 GTTTACTGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCA
* * * * * ** ** *
24749009 AATCATTATGACATTTTCTTTTATTATAAAGTAATTGTTTCTATTCATACAAAATTA-TTCAGAA
1 AATTATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGA-AA
* ** * * *
24749073 TAAAATAATACCAATTTATTGCTATTTCAAAAATTAAT-AAGGATTT-AAAAATAAATGTGTTTT
65 TAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAAAGATTTAAAAAATAAATCTGTTTA
* * * * *
24749136 CT-AAGTAATTCAAATAGTTAAGACTATTAGAACAATTATCTATTCCA
130 CTGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCA
* ** * * * * * *
24749183 AATTATTTTGATATTTTGTTTAGTCAAAAAATAATTGTTTCAATTCATACATGCTTATTCGAAAT
1 AATTATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAAT
** * * * * *
24749248 GTAGTAACACTAATTTATTAAAATTT-AGAAAATTAATAAGAA-ATTTTAAAAAGT---TCTATT
66 AAAATAATACTAATTTATTAATATTTCA-AAAATTAATAA-AAGA-TTTAAAAAATAAATCTGTT
* * * * * *
24749308 TAC-CAAATAAGTTCAAATAGTTATGTCTATTTGAATAATTATCTGTTTAA
128 TACTGAACT-AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCA
** * * * * * **
24749358 AATCGTTATGACCTTTTATTTTATCATAAAACAATTGTTTCAATACATAAAAG-TT-TTCCCAAA
1 AATTATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATT--TGAA
* ** * * * *
24749421 ATAAAATAATATTGCTTTATTAATATTTCAAAAATTAAGAAGTTGGAGTTTTAAAAAATAAATCA
64 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAA----AAGATTTAAAAAATAAATCT
* * * * * *
24749486 GTTTA-TCAAATTA-TTCAAATAATTATGGCCATTTGAATAATTATCTATTTCA
125 GTTTACT-GAACTAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCA
* * * * *
24749538 AATCATTATGAACTTTTGTTTTGTCATAAAACAATTATTTTTCA-TCATACAAGCCTATTT-AGA
1 AATTATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCT-ATTCATACAAGCTTATTTGA-A
* * *
24749601 ATAAAATAATACTAATTTACTAATATTTTCAAAAATTAATAAAAGATTTAAAAAGTTAATCTGTT
64 ATAAAATAATACTAATTTATTAATA-TTTCAAAAATTAATAAAAGATTTAAAAAATAAATCTGTT
* *
24749666 TACTGAACTAGTTCAAATAGTTATGACTATTTGAAGAATTATATATTTCA
128 TACTGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCA
* * * * * * *
24749716 AATTGTTATAACCTTTTGTTATCTCATAAAACAATTATTTCTATTCACACAAGTTTATTTGAAAT
1 AATTATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAAT
* * * ** * *
24749781 AAAATAATACCAATGTAATAATATTTTGAAAATTAATAACTAAGAGATTTAAAAAATAAATTTAT
66 AAAATAATACTAATTTATTAATATTTCAAAAATTAAT-A--AA-AGATTTAAAAAATAAATCTGT
* * ** ** * *
24749846 TTACTGAACTAGTTCAAATATTTAAGGGTATATAAAACAATTCTTTATTTCA
127 TTACTGAACTAGTTCAAATAGTTATGACTAT-TTGAACAATTATCTATTTCA
* * * * * *
24749898 AATTATTATGACCTTTTGTTTTATCGTAAAACAATTTTTTC-ATTTCTTAGTAA-CTTATTCGAA
1 AATTATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATA-CAAGCTTATTTGAA
* * * * * *
24749961 ATAAAGTAAAACAAATTTATTAATATTTCAAAATTTAATAAGCAAGAGATTAAAAAAACAAATTC
64 ATAAAATAATACTAATTTATTAATATTTCAAAAATTAAT-A--AA-AGATTTAAAAAATAAA-TC
* * * *
24750026 AGTTTACCT-AACTAGTTTAAATAATTATCACTATTTGAACAATTATCTATTTCA
124 TGTTTA-CTGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCA
** ** * *
24750080 AATCGTTATGTTCTTTTATTTTGTCGTAAAA
1 AATTATTATGACCTTTTGTTTTGTCATAAAA
24750111 TAAATTATAT
Statistics
Matches: 1431, Mismatches: 318, Indels: 147
0.75 0.17 0.08
Matches are distributed among these distances:
173 3 0.00
174 121 0.08
175 125 0.09
176 6 0.00
177 51 0.04
178 220 0.15
179 37 0.03
180 266 0.19
181 277 0.19
182 288 0.20
183 35 0.02
184 2 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.41
Consensus pattern (177 bp):
AATTATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTGAAAT
AAAATAATACTAATTTATTAATATTTCAAAAATTAATAAAAGATTTAAAAAATAAATCTGTTTAC
TGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCA
Found at i:24750222 original size:12 final size:11
Alignment explanation
Indices: 24750207--24750268 Score: 52
Period size: 12 Copynumber: 5.3 Consensus size: 11
24750197 TTATATTAAT
24750207 AATTTATTTATA
1 AATTTA-TTATA
*
24750219 AATTATATTCTTA
1 AATT-TATT-ATA
*
24750232 TATTTATTATA
1 AATTTATTATA
* *
24750243 ATTGTTATAATA
1 AAT-TTATTATA
24750255 AATTTATTATA
1 AATTTATTATA
24750266 AAT
1 AAT
24750269 ACTATTAAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
11 13 0.33
12 19 0.49
13 7 0.18
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (11 bp):
AATTTATTATA
Found at i:24750227 original size:24 final size:23
Alignment explanation
Indices: 24750195--24750276 Score: 71
Period size: 24 Copynumber: 3.5 Consensus size: 23
24750185 AAGTTATAGC
24750195 AATTATATTAATAATTTATTTATA
1 AATTATATTAATAATTTA-TTATA
**
24750219 AATTATATTCTTATATTTATTAT-
1 AATTATATTAATA-ATTTATTATA
*
24750242 AATTGT-TATAATAAATTTATTATA
1 AATTATAT-TAAT-AATTTATTATA
24750266 AA-TACTATTAA
1 AATTA-TATTAA
24750277 ATATTATTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
22 1 0.02
23 17 0.37
24 22 0.48
25 6 0.13
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.52
Consensus pattern (23 bp):
AATTATATTAATAATTTATTATA
Found at i:24750425 original size:19 final size:19
Alignment explanation
Indices: 24750401--24750438 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
24750391 ATTATTAACT
24750401 AATAATAATTAATAATTTA
1 AATAATAATTAATAATTTA
24750420 AATAATAATTAATAATTTA
1 AATAATAATTAATAATTTA
24750439 TTATAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
AATAATAATTAATAATTTA
Found at i:24751323 original size:179 final size:179
Alignment explanation
Indices: 24750905--24751481 Score: 523
Period size: 177 Copynumber: 3.2 Consensus size: 179
24750895 ATAAACATAT
* * * * ** *
24750905 TTATTTTTAAAATATTTTACTTATTAATTATCAAAATATTAACAAATTAGTATTATTTTA-ATCT
1 TTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAACAAATTAGTATTATTTTATTTC-
* * * * * *
24750969 AAATAAGCTTGTATAAATAGAAACAATTATTTTATAACAGAACAAAAAGTCATAACGATTTGAAA
65 AAATAAGCTTGTATGAACAAAAAC-ATTATTTTATGACAAAACAAAAAGTAATAACGATTTGAAA
** * * * * * * *
24751034 TAAATAATTACTCAAATAATCATAACTTTTTGAACTAGTTTGATACATAGAT
129 TAAATAATTGTTCAAAT-ATTATAACTTTTTGAATTGGTTAGGTAAATAGAA
* * * *
24751086 TTATTTTTTAAA--TC--ACTTATTAATTTTTGAAATATTAATAGATTAGTATTACTTTATTTCG
1 TTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAACAAATTAGTATTATTTTATTTCA
* * * *
24751147 AATAAACTTATATGAACAAAAACATTTGTTTTATGACAAAACAAAAAGTAATAATGATTTGAAAT
66 AATAAGCTTGTATGAACAAAAACA-TTATTTTATGACAAAACAAAAAGTAATAACGATTTGAAAT
* *
24751212 ATATAATTGTTCAAATATTATAATTTTTTGAATTGGTTAGGTAAATAGAA
130 AAATAATTGTTCAAATATTATAACTTTTTGAATTGGTTAGGTAAATAGAA
* *
24751262 TTA-TTTTTAAATCTCTTATTTATTAATTTTTGAAATATTAACAAATTCA-TTTTATTTTATTTC
1 TTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAACAAATT-AGTATTATTTTATTTC
* * * * *
24751325 AAATAAGCTGGTATGAATTGAGAAAAC--TATTTTATGACAAGAC-AAAGGTTATAACGATTTGA
65 AAATAAGCTTGTATGAA--CA-AAAACATTATTTTATGACAAAACAAAAAGTAATAACGATTTGA
* * * * * * *
24751387 ATTAGATAATTGTTCATATAGTCT-TAACTATTTAAATTGGTTCGGCAAATA-AA
127 AATAAATAATTGTTCAAATA-T-TATAACTTTTTGAATTGGTTAGGTAAATAGAA
* *
24751440 TTTATTTTTTAAATCCCTTAGTTATTAATTTTTTG-AATATTA
1 -TTATTTTTTAAATCTCTTACTTATTAA-TTTTTGAAATATTA
24751482 TTAGATTCGT
Statistics
Matches: 325, Mismatches: 56, Indels: 31
0.79 0.14 0.08
Matches are distributed among these distances:
175 8 0.02
176 30 0.09
177 104 0.32
178 37 0.11
179 93 0.29
180 30 0.09
181 18 0.06
182 5 0.02
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.43
Consensus pattern (179 bp):
TTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAACAAATTAGTATTATTTTATTTCA
AATAAGCTTGTATGAACAAAAACATTATTTTATGACAAAACAAAAAGTAATAACGATTTGAAATA
AATAATTGTTCAAATATTATAACTTTTTGAATTGGTTAGGTAAATAGAA
Found at i:24751541 original size:143 final size:141
Alignment explanation
Indices: 24751354--24751614 Score: 344
Period size: 143 Copynumber: 1.8 Consensus size: 141
24751344 GAGAAAACTA
* * * * **
24751354 TTTTATGACAAGACAAAGGTTATAACGATTTGAATTAGATAATTGTTCATATAGTCTTAACTATT
1 TTTTATGACAAGACAAAGGTTATAACGATATGAAGTAGAGAATTGTTCAAATAGTCACAACTATT
* * * *
24751419 TAAATTGGTTCGGCAAATAAATTTATTTTTTAAATCCCTTAGTTATTAATTTTTTGAATATTATT
66 TAAACTGGTTCGGCAAACAAATTCATTTTTTAAA-CCCTTACTTATTAATTTTTTGAATATTATT
24751484 AGATTCGTATTG
130 AGATTCGTATTG
* *
24751496 TTTTATGACAA-AGCAAAAGGTTATAATGATATGAAGTATAGAATTGTTCAAATAGTCACAACTA
1 TTTTATGACAAGA-C-AAAGGTTATAACGATATGAAGTAGAGAATTGTTCAAATAGTCACAACTA
* * * *
24751560 TTTAAACTGGTTTGGTAAACAGATTCATTTTTTAAACTCTTACTTATTAATTTTT
64 TTTAAACTGGTTCGGCAAACAAATTCATTTTTTAAACCCTTACTTATTAATTTTT
24751615 GAAATTGTTA
Statistics
Matches: 101, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
141 1 0.01
142 29 0.29
143 71 0.70
ACGTcount: A:0.35, C:0.09, G:0.13, T:0.43
Consensus pattern (141 bp):
TTTTATGACAAGACAAAGGTTATAACGATATGAAGTAGAGAATTGTTCAAATAGTCACAACTATT
TAAACTGGTTCGGCAAACAAATTCATTTTTTAAACCCTTACTTATTAATTTTTTGAATATTATTA
GATTCGTATTG
Found at i:24753273 original size:24 final size:24
Alignment explanation
Indices: 24753220--24753278 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 24
24753210 TTTGACCTGT
*
24753220 TATACAATATTAATAATTATTTAA
1 TATACAATATAAATAATTATTTAA
24753244 TAATACAA-ATAAATTAA-TATTATAA
1 T-ATACAATATAAA-TAATTATT-TAA
24753269 TATACAATAT
1 TATACAATAT
24753279 TATATGATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
24 15 0.50
25 15 0.50
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (24 bp):
TATACAATATAAATAATTATTTAA
Found at i:24753370 original size:16 final size:17
Alignment explanation
Indices: 24753349--24753380 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
24753339 ATATATTTAA
24753349 TATATTATT-AACTATT
1 TATATTATTAAACTATT
24753365 TATATTATTAAACTAT
1 TATATTATTAAACTAT
24753381 CATAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATTATTAAACTATT
Found at i:24753648 original size:16 final size:15
Alignment explanation
Indices: 24753623--24753656 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
24753613 AAATTAATAG
*
24753623 ATTATAATAATATCT
1 ATTATAATAATAACT
24753638 ATTATTAATAATAACT
1 ATTA-TAATAATAACT
24753654 ATT
1 ATT
24753657 TCCATTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTATAATAATAACT
Found at i:24753860 original size:19 final size:19
Alignment explanation
Indices: 24753836--24753874 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
24753826 TAATAATCAT
*
24753836 TAATTAATAAT-TGTATTAA
1 TAATTAACAATAT-TATTAA
24753855 TAATTAACAATATTATTAA
1 TAATTAACAATATTATTAA
24753874 T
1 T
24753875 GGCCATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TAATTAACAATATTATTAA
Found at i:24753916 original size:23 final size:22
Alignment explanation
Indices: 24753890--24754021 Score: 86
Period size: 20 Copynumber: 6.4 Consensus size: 22
24753880 TTGAATAAAT
24753890 TATTAATATTATTAATAATATTA
1 TATTAATATTATTAAT-ATATTA
24753913 TATTAATATTATTAATATATT-
1 TATTAATATTATTAATATATTA
* *** **
24753934 TAATAATCCAATT-GGATATTA
1 TATTAATATTATTAATATATTA
*
24753955 -ATT--TGATTATTAATATAATA
1 TATTAAT-ATTATTAATATATTA
*
24753975 TATTACTA-TATT-ATA-ATTA
1 TATTAATATTATTAATATATTA
* *
24753994 TA-TAATATAATTAATAT-TAA
1 TATTAATATTATTAATATATTA
24754014 TATTAATA
1 TATTAATA
24754022 AATAATAAAT
Statistics
Matches: 82, Mismatches: 17, Indels: 22
0.68 0.14 0.18
Matches are distributed among these distances:
18 5 0.06
19 11 0.13
20 22 0.27
21 21 0.26
22 6 0.07
23 17 0.21
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
TATTAATATTATTAATATATTA
Found at i:24753984 original size:13 final size:14
Alignment explanation
Indices: 24753963--24754043 Score: 78
Period size: 13 Copynumber: 5.8 Consensus size: 14
24753953 TAATTTGATT
24753963 ATTAATATAATAT-
1 ATTAATATAATATA
* *
24753976 ATTACTATATTATA
1 ATTAATATAATATA
24753990 ATT-ATATAATATA
1 ATTAATATAATATA
24754003 ATTAATATTAATATTA
1 ATTAATA-TAATA-TA
*
24754019 ATAAATAATAA-ATA
1 ATTAAT-ATAATATA
*
24754033 ATTATTATAAT
1 ATTAATATAAT
24754044 TATTAGTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
13 26 0.47
14 12 0.22
15 6 0.11
16 10 0.18
17 1 0.02
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (14 bp):
ATTAATATAATATA
Found at i:24754035 original size:30 final size:30
Alignment explanation
Indices: 24753965--24754056 Score: 82
Period size: 30 Copynumber: 3.0 Consensus size: 30
24753955 ATTTGATTAT
* *
24753965 TAATATAATATATTACT-ATATT-ATAATTATA
1 TAATATAAT-TAATA-TAATATTAATAAATA-A
24753996 TAATATAATTAATATTAATATTAATAAATAA
1 TAATATAATTAATA-TAATATTAATAAATAA
* *
24754027 TAA-ATAATTATTATAATTATTAGTAAATAA
1 TAATATAATTAATATAA-TATTAATAAATAA
24754057 ATCTTTAAAT
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
29 3 0.06
30 26 0.49
31 18 0.34
32 6 0.11
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (30 bp):
TAATATAATTAATATAATATTAATAAATAA
Found at i:24754043 original size:23 final size:20
Alignment explanation
Indices: 24753987--24754043 Score: 53
Period size: 23 Copynumber: 2.6 Consensus size: 20
24753977 TTACTATATT
*
24753987 ATAATTATATAATATAATTA
1 ATAATTATATAATATAATAA
24754007 AT-ATTAATATTAATAAATAATAA
1 ATAATT-ATA-TAAT--ATAATAA
24754030 ATAATTATTATAAT
1 ATAATTA-TATAAT
24754044 TATTAGTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
19 3 0.10
20 5 0.17
21 4 0.13
23 13 0.43
24 5 0.17
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
ATAATTATATAATATAATAA
Found at i:24754395 original size:14 final size:14
Alignment explanation
Indices: 24754376--24754405 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
24754366 ATTGTTTATT
24754376 ATATTATAATAATA
1 ATATTATAATAATA
*
24754390 ATATTATAATTATA
1 ATATTATAATAATA
24754404 AT
1 AT
24754406 CTATTTGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATATTATAATAATA
Found at i:24755924 original size:21 final size:21
Alignment explanation
Indices: 24755879--24755938 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
24755869 TCTATTAATT
24755879 TTCTATTTAA--A-TTAAATA
1 TTCTATTTAATTATTTAAATA
24755897 -T-TATTTAATTATTTAAATA
1 TTCTATTTAATTATTTAAATA
* *
24755916 TTCTATTTATTTATTTTAATA
1 TTCTATTTAATTATTTAAATA
24755937 TT
1 TT
24755939 AATTAATTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
16 7 0.20
17 1 0.03
18 1 0.03
19 7 0.20
20 1 0.03
21 18 0.51
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (21 bp):
TTCTATTTAATTATTTAAATA
Found at i:24755951 original size:5 final size:4
Alignment explanation
Indices: 24755936--24756009 Score: 55
Period size: 4 Copynumber: 17.5 Consensus size: 4
24755926 TTATTTTAAT
*
24755936 ATTA ATTA ATTAA ATTG ATTA TATTA ATTA ATATA ATT- ATTA ATTA AGTCTA
1 ATTA ATTA ATT-A ATTA ATTA -ATTA ATTA AT-TA ATTA ATTA ATTA A-T-TA
24755988 ATATA ATATA A-TA ATT- ATTA AT
1 AT-TA AT-TA ATTA ATTA ATTA AT
24756010 AAGATATAAT
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
3 9 0.15
4 25 0.42
5 22 0.37
6 3 0.05
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (4 bp):
ATTA
Found at i:24755962 original size:22 final size:21
Alignment explanation
Indices: 24755934--24756010 Score: 72
Period size: 22 Copynumber: 3.6 Consensus size: 21
24755924 ATTTATTTTA
24755934 ATATTAATTAAT-TAAATTGATT
1 ATATTAATTAATAT-AATT-ATT
24755956 ATATTAATTAATATAATTATT
1 ATATTAATTAATATAATTATT
*
24755977 A-ATTAAGTCTAATATAA-TATA
1 ATATTAA-T-TAATATAATTATT
24755998 ATAATT-ATTAATA
1 AT-ATTAATTAATA
24756011 AGATATAATA
Statistics
Matches: 49, Mismatches: 1, Indels: 12
0.79 0.02 0.19
Matches are distributed among these distances:
20 10 0.20
21 10 0.20
22 25 0.51
23 4 0.08
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (21 bp):
ATATTAATTAATATAATTATT
Found at i:24756009 original size:20 final size:21
Alignment explanation
Indices: 24755958--24756021 Score: 71
Period size: 20 Copynumber: 3.0 Consensus size: 21
24755948 AATTGATTAT
*
24755958 ATTAATTAATATAAT-TATTA
1 ATTAATTAATATAATATAATA
24755978 ATTAAGTCTAATATAATATAATA
1 ATTAA-T-TAATATAATATAATA
24756001 ATT-ATTAATA-AGATATAATA
1 ATTAATTAATATA-ATATAATA
24756021 A
1 A
24756022 AGGATAAATT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
19 1 0.03
20 19 0.49
21 2 0.05
22 10 0.26
23 7 0.18
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (21 bp):
ATTAATTAATATAATATAATA
Found at i:24756123 original size:25 final size:26
Alignment explanation
Indices: 24756067--24756126 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 26
24756057 CTATTTTCAA
* * *
24756067 AATAATAATTAATTATTCATAATTAT
1 AATAATAATTAATTAATAATAATAAT
*
24756093 TA-AATAATTAA-TAATAATAATAAT
1 AATAATAATTAATTAATAATAATAAT
24756117 AATAATAATT
1 AATAATAATT
24756127 CACAAAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
24 11 0.39
25 16 0.57
26 1 0.04
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (26 bp):
AATAATAATTAATTAATAATAATAAT
Found at i:24756144 original size:3 final size:3
Alignment explanation
Indices: 24756095--24756125 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
24756085 ATAATTATTA
24756095 AAT AATT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT
24756126 TCACAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:24756207 original size:18 final size:17
Alignment explanation
Indices: 24756173--24756227 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 17
24756163 AAATAATTGC
24756173 AATTAATTATT-TGTAAT
1 AATTAATTATTAT-TAAT
24756190 AATTAATCTATTATTAAT
1 AATTAAT-TATTATTAAT
24756208 -ATTATATTATATATTAAT
1 AATTA-ATTAT-TATTAAT
24756226 AA
1 AA
24756228 AGTAATCTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
17 14 0.42
18 17 0.52
19 2 0.06
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (17 bp):
AATTAATTATTATTAAT
Found at i:24756339 original size:15 final size:15
Alignment explanation
Indices: 24756321--24756350 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
24756311 TTAATCTATA
24756321 TATTATTATAATATT
1 TATTATTATAATATT
24756336 TATTATTATAATATT
1 TATTATTATAATATT
24756351 AAGGATTGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TATTATTATAATATT
Found at i:24756408 original size:14 final size:14
Alignment explanation
Indices: 24756391--24756417 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
24756381 TTAATTATTT
24756391 AATAAATATAATAC
1 AATAAATATAATAC
24756405 AATAAATATAATA
1 AATAAATATAATA
24756418 TATAAATAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.30
Consensus pattern (14 bp):
AATAAATATAATAC
Found at i:24756937 original size:19 final size:18
Alignment explanation
Indices: 24756905--24756943 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
24756895 ATGTTATTTT
24756905 ATTAAAAATAAATTATTA
1 ATTAAAAATAAATTATTA
*
24756923 ATTAAAATATTAATTATTA
1 ATTAAAA-ATAAATTATTA
24756942 AT
1 AT
24756944 ATTTCAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTAAAAATAAATTATTA
Found at i:24757291 original size:25 final size:23
Alignment explanation
Indices: 24757262--24757330 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 23
24757252 AAAATTACTA
24757262 ATATTATAAAAATATGATAATTATT
1 ATATTATAAAAATAT--TAATTATT
*
24757287 ATATTATAATAATATTAATTATT
1 ATATTATAAAAATATTAATTATT
* *
24757310 AGTAATATTATAAATATTAAT
1 A-TATTA-TAAAAATATTAAT
24757331 ATAATAAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 9 0.24
24 4 0.11
25 25 0.66
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (23 bp):
ATATTATAAAAATATTAATTATT
Done.