Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 251 of 402
Found at i:24757315 original size:16 final size:16
Alignment explanation
Indices: 24757278--24757321 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
24757268 TAAAAATATG
24757278 ATAATTATTATATTATA
1 ATAA-TATTATATTATA
24757295 ATAATATTA-ATTATTA
1 ATAATATTATATTA-TA
*
24757311 GTAATATTATA
1 ATAATATTATA
24757322 AATATTAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 4 0.17
16 15 0.62
17 5 0.21
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (16 bp):
ATAATATTATATTATA
Found at i:24757327 original size:18 final size:18
Alignment explanation
Indices: 24757287--24757328 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
24757277 GATAATTATT
24757287 ATATTATAATAATATTAA
1 ATATTATAATAATATTAA
* *
24757305 TTATTAGTAATATTA-TAA
1 ATATTA-TAATAATATTAA
24757323 ATATTA
1 ATATTA
24757329 ATATAATAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (18 bp):
ATATTATAATAATATTAA
Found at i:24759274 original size:20 final size:22
Alignment explanation
Indices: 24759249--24759295 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
24759239 ATGTTTAAAT
24759249 TTATTA-ACTATAAT-TAATAA
1 TTATTATACTATAATATAATAA
*
24759269 TTATTATTATTATAATATAATAA
1 TTATTA-TACTATAATATAATAA
24759292 TTAT
1 TTAT
24759296 AATTTAACGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 6 0.26
22 7 0.30
23 10 0.43
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
TTATTATACTATAATATAATAA
Found at i:24759493 original size:29 final size:29
Alignment explanation
Indices: 24759461--24759532 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
24759451 TATAACATAT
*
24759461 AATAATTAAATAAT-ATTTTTAATGTTACA
1 AATAATTAAATAATAATTATTAAT-TTACA
* * *
24759490 AATAATTATATATTAATTATTAATTTATA
1 AATAATTAAATAATAATTATTAATTTACA
24759519 AA-AATATAAATAAT
1 AATAAT-TAAATAAT
24759533 TTCATATTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
28 3 0.09
29 24 0.69
30 8 0.23
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (29 bp):
AATAATTAAATAATAATTATTAATTTACA
Found at i:24760442 original size:23 final size:20
Alignment explanation
Indices: 24760416--24760462 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
24760406 ATGTTTAAAT
24760416 TTATTAACTATAATTAATAATAA
1 TTATT-ACTATAA-T-ATAATAA
*
24760439 TTATTATTATAATATAATAA
1 TTATTACTATAATATAATAA
24760459 TTAT
1 TTAT
24760463 AATTTAACAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 11 0.48
21 1 0.04
22 6 0.26
23 5 0.22
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
TTATTACTATAATATAATAA
Found at i:24760733 original size:36 final size:34
Alignment explanation
Indices: 24760693--24760777 Score: 91
Period size: 35 Copynumber: 2.4 Consensus size: 34
24760683 ATAAATATAT
*
24760693 AAATAATTTGATATTATTATTATTATT-ATTATTAAA
1 AAAT-ATTTGATATTATT-CTATTATTAATTA-TAAA
* *
24760729 AAATATATTGATATAATTCTATTATTAATTATAAC
1 AAATAT-TTGATATTATTCTATTATTAATTATAAA
*
24760764 AAATATTTAATATT
1 AAATATTTGATATT
24760778 TAATAGTAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
34 6 0.14
35 18 0.43
36 18 0.43
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (34 bp):
AAATATTTGATATTATTCTATTATTAATTATAAA
Found at i:24761047 original size:13 final size:14
Alignment explanation
Indices: 24761029--24761061 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
24761019 ATTTATTTAT
24761029 AATTATA-TAGATA
1 AATTATATTAGATA
24761042 AATTATATTAGATA
1 AATTATATTAGATA
24761056 ATATTA
1 A-ATTA
24761062 ATAATATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 7 0.39
15 4 0.22
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (14 bp):
AATTATATTAGATA
Found at i:24761395 original size:10 final size:11
Alignment explanation
Indices: 24761378--24761409 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
24761368 TTAACAAATT
24761378 ATTAATTGATA
1 ATTAATTGATA
24761389 A-TAATTGATA
1 ATTAATTGATA
24761399 ATTAATT-ATA
1 ATTAATTGATA
24761409 A
1 A
24761410 CGATCTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 14 0.70
11 6 0.30
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (11 bp):
ATTAATTGATA
Found at i:24761493 original size:7 final size:6
Alignment explanation
Indices: 24761480--24761532 Score: 51
Period size: 6 Copynumber: 9.2 Consensus size: 6
24761470 GGGATAAATA
*
24761480 AATTAT AATCTAT AATTAT AAATTAT AA-TAT --TTAT AATTA- AATAAT
1 AATTAT AAT-TAT AATTAT -AATTAT AATTAT AATTAT AATTAT AATTAT
24761526 AATTAT A
1 AATTAT A
24761533 CGAATAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
4 3 0.08
5 7 0.18
6 17 0.44
7 12 0.31
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (6 bp):
AATTAT
Found at i:24762131 original size:15 final size:16
Alignment explanation
Indices: 24762102--24762141 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
24762092 TATAATACTT
24762102 TAATTATTAATTC-AA
1 TAATTATTAATTCAAA
24762117 TAATTATT-ATATCAAA
1 TAATTATTAAT-TCAAA
24762133 TAA-TATTAA
1 TAATTATTAA
24762142 CTTTAACATC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 2 0.09
15 14 0.64
16 6 0.27
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (16 bp):
TAATTATTAATTCAAA
Found at i:24762325 original size:27 final size:24
Alignment explanation
Indices: 24762275--24762327 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
24762265 AATTGTATAA
*
24762275 TAATAATATTAATATAATTCAAGT
1 TAATAATATTAATATAATTAAAGT
*
24762299 TAATAATATTTAACTATATTTAAAAGT
1 TAATAATA-TTAA-TATAATT-AAAGT
24762326 TA
1 TA
24762328 TTTAAAATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.33
25 4 0.17
26 6 0.25
27 6 0.25
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (24 bp):
TAATAATATTAATATAATTAAAGT
Found at i:24762363 original size:18 final size:18
Alignment explanation
Indices: 24762340--24762378 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
24762330 TAAAATTGTT
24762340 ATAATTATTA-TATTGATA
1 ATAATTATTATTATT-ATA
24762358 ATAATTATTATTATTATA
1 ATAATTATTATTATTATA
24762376 ATA
1 ATA
24762379 TAAATTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
ATAATTATTATTATTATA
Found at i:24762364 original size:15 final size:14
Alignment explanation
Indices: 24762338--24762391 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 14
24762328 TTTAAAATTG
*
24762338 TTATAATTATTATA
1 TTATAATAATTATA
24762352 TTGATAATAATTATTA
1 TT-ATAATAATTA-TA
* *
24762368 TTATTATAATATAAA
1 TTATAATAAT-TATA
24762383 TTATAATAA
1 TTATAATAA
24762392 ATATTAATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
14 2 0.06
15 25 0.76
16 6 0.18
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (14 bp):
TTATAATAATTATA
Found at i:24762451 original size:16 final size:15
Alignment explanation
Indices: 24762430--24762459 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
24762420 ATACTATAAT
24762430 TATATAAATATATTAA
1 TATATAAAT-TATTAA
24762446 TATATAAATTATTA
1 TATATAAATTATTA
24762460 TAATTATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TATATAAATTATTAA
Found at i:24762476 original size:23 final size:22
Alignment explanation
Indices: 24762450--24762492 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
24762440 TATTAATATA
*
24762450 TAAATTATTATAATTATAATTTT
1 TAAATTAATATAATT-TAATTTT
24762473 TAAATTAATATAATTTAATT
1 TAAATTAATATAATTTAATT
24762493 AAAATTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TAAATTAATATAATTTAATTTT
Found at i:24762632 original size:35 final size:37
Alignment explanation
Indices: 24762593--24762670 Score: 92
Period size: 35 Copynumber: 2.2 Consensus size: 37
24762583 TAATATAAGC
24762593 TTATAATATTAATCAAT-T-TGAAATT-TATTTA-TAA
1 TTATAATATTAAT-AATATATGAAATTCTATTTATTAA
* *
24762627 TTTATATTATTAATAATATATGAATTTCTATTTATTAA
1 -TTATAATATTAATAATATATGAAATTCTATTTATTAA
24762665 TTATAA
1 TTATAA
24762671 AAGATAATTC
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
34 3 0.08
35 13 0.36
36 6 0.17
37 11 0.31
38 3 0.08
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (37 bp):
TTATAATATTAATAATATATGAAATTCTATTTATTAA
Found at i:24763394 original size:180 final size:179
Alignment explanation
Indices: 24763088--24763440 Score: 426
Period size: 180 Copynumber: 2.0 Consensus size: 179
24763078 TTGCCCTCAA
* * * **
24763088 TTCAAATAGTTAAGACTCTATGAATGATTATTATTTCAAATCGTTATGACATTTTCTTTTATTGT
1 TTCAAATAGTTAAGACTCTATGAATAATTATTATTTCAAATCATTATGACATTTTCGTTTATCAT
* * * * *
24763153 AAAATAATTGTTTTGTTCATACAAGCTTATTCGGATTAAAATAACACTAATTTAATAATATTTTG
66 AAAACAATTGTTTAGTTCATACAAGCTTATTCAGAATAAAATAACACTAATTTAATAATATTTGG
* * *
24763218 AATATTAATAAGTAAGATATTT-AAAAATAAATTTGTTTACTAAATCAG
131 AAAATTAATAAGAAAGAGATTTAAAAAATAAATTTGTTTACTAAATCAG
* * *
24763266 TTCAAATGGTTAAGA-T-TATTAGAATAATTATCTATTTCAAATCATTTTGATATTTT-GTTTAG
1 TTCAAATAGTTAAGACTCTA-T-GAATAATTAT-TATTTCAAATCATTATGACATTTTCGTTTA-
* * * *
24763328 TCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTAGAATAAATTAATACTAATTTATTAATA
62 TCATAAAACAATTGTTT-AGTTCATACAAGCTTATTCAGAATAAAATAACACTAATTTAATAATA
* *
24763393 TTTGGAAAATTAATATGAAAGAGGTTTAAAAAAATAAATTTGTTTACT
126 TTTGGAAAATTAATAAGAAAGAGATTT-AAAAAATAAATTTGTTTACT
24763441 GAACAAATTC
Statistics
Matches: 146, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
176 2 0.01
177 2 0.01
178 27 0.18
179 35 0.24
180 61 0.42
182 19 0.13
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (179 bp):
TTCAAATAGTTAAGACTCTATGAATAATTATTATTTCAAATCATTATGACATTTTCGTTTATCAT
AAAACAATTGTTTAGTTCATACAAGCTTATTCAGAATAAAATAACACTAATTTAATAATATTTGG
AAAATTAATAAGAAAGAGATTTAAAAAATAAATTTGTTTACTAAATCAG
Found at i:24763694 original size:15 final size:12
Alignment explanation
Indices: 24763656--24763685 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
24763646 ATTAATCTAC
24763656 ATATATTATTATA
1 ATAT-TTATTATA
24763669 ATATTTATTATA
1 ATATTTATTATA
24763681 ATATT
1 ATATT
24763686 GTTAATTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
ATATTTATTATA
Found at i:24763862 original size:19 final size:17
Alignment explanation
Indices: 24763840--24763883 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 17
24763830 TTAAAATTAA
24763840 AATTAAATTAATGTTATAT
1 AATTAAATTAAT-TT-TAT
24763859 AATTAATAATTAATTTTAT
1 AATT-A-AATTAATTTTAT
24763878 AATTAA
1 AATTAA
24763884 TCTAATAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
17 1 0.04
18 1 0.04
19 11 0.48
20 3 0.13
21 7 0.30
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (17 bp):
AATTAAATTAATTTTAT
Found at i:24763871 original size:21 final size:24
Alignment explanation
Indices: 24763845--24763896 Score: 74
Period size: 21 Copynumber: 2.3 Consensus size: 24
24763835 ATTAAAATTA
24763845 AATTAATGTTAT-A-TAAT-TAAT
1 AATTAATGTTATAATTAATCTAAT
*
24763866 AATTAATTTTATAATTAATCTAAT
1 AATTAATGTTATAATTAATCTAAT
24763890 AATTAAT
1 AATTAAT
24763897 AACTTTAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 11 0.41
22 1 0.04
23 4 0.15
24 11 0.41
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (24 bp):
AATTAATGTTATAATTAATCTAAT
Found at i:24763881 original size:12 final size:12
Alignment explanation
Indices: 24763858--24763896 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
24763848 TAATGTTATA
24763858 TAAT-TAATAAT
1 TAATCTAATAAT
* *
24763869 TAATTTTATAAT
1 TAATCTAATAAT
24763881 TAATCTAATAAT
1 TAATCTAATAAT
24763893 TAAT
1 TAAT
24763897 AACTTTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 4 0.17
12 20 0.83
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (12 bp):
TAATCTAATAAT
Found at i:24764134 original size:20 final size:20
Alignment explanation
Indices: 24764105--24764147 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
24764095 AACATTTAAC
*
24764105 TATTACTTATTAATAATAAA
1 TATTAATTATTAATAATAAA
* *
24764125 TATTAATTATTTATTATAAA
1 TATTAATTATTAATAATAAA
24764145 TAT
1 TAT
24764148 ACTTAAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
TATTAATTATTAATAATAAA
Found at i:24764138 original size:24 final size:24
Alignment explanation
Indices: 24764106--24764161 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
24764096 ACATTTAACT
*
24764106 ATTACTTATTAATAATAAATA-TT-A
1 ATTATTTATT-ATAA-AAATACTTAA
*
24764130 ATTATTTATTATAAATATACTTAA
1 ATTATTTATTATAAAAATACTTAA
24764154 ATTATTTA
1 ATTATTTA
24764162 AATGTATTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 4 0.14
23 6 0.21
24 18 0.64
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (24 bp):
ATTATTTATTATAAAAATACTTAA
Found at i:24764357 original size:15 final size:15
Alignment explanation
Indices: 24764337--24764378 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
24764327 TTAATGTTAA
*
24764337 ATATTAATATTATTC
1 ATATTAATAATATTC
*
24764352 ATATT-ATAATATTT
1 ATATTAATAATATTC
24764366 ATACTTAATAATA
1 ATA-TTAATAATA
24764379 ACATTAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 10 0.43
15 7 0.30
16 6 0.26
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATTAATAATATTC
Found at i:24764441 original size:17 final size:18
Alignment explanation
Indices: 24764412--24764450 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
24764402 TATTATTAAA
*
24764412 TAAA-TAATATATAATAT
1 TAAATTAATATATAAAAT
24764429 TAAATTAAT-TATAAAAT
1 TAAATTAATATATAAAAT
24764446 TAAAT
1 TAAAT
24764451 ATTATATGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TAAATTAATATATAAAAT
Found at i:24764636 original size:20 final size:21
Alignment explanation
Indices: 24764607--24764646 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
24764597 AATTATATAT
24764607 TAATTGTATATA-ATATTAAA
1 TAATTGTATATATATATTAAA
*
24764627 TAATTTTATATATATATTAA
1 TAATTGTATATATATATTAA
24764647 CAATTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (21 bp):
TAATTGTATATATATATTAAA
Found at i:24764651 original size:20 final size:20
Alignment explanation
Indices: 24764608--24764651 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
24764598 ATTATATATT
*
24764608 AATTGTATATAATATTAAAT
1 AATTGTATATAATATTAAAC
*
24764628 AATTTTATATATATATT-AAC
1 AATTGTATATA-ATATTAAAC
24764648 AATT
1 AATT
24764652 AATATGAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (20 bp):
AATTGTATATAATATTAAAC
Found at i:24764674 original size:21 final size:20
Alignment explanation
Indices: 24764613--24764677 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 20
24764603 ATATTAATTG
* *
24764613 TATATAATATTAAATAATTTTA
1 TATA-AATATT-AATAAATTAA
* *
24764635 TATATATATTAA-CAATTAA
1 TATAAATATTAATAAATTAA
24764654 TATGAAATATTAATAAATTAA
1 TAT-AAATATTAATAAATTAA
24764675 TAT
1 TAT
24764678 TTGTTAATGA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
19 7 0.20
20 10 0.29
21 14 0.40
22 4 0.11
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (20 bp):
TATAAATATTAATAAATTAA
Found at i:24764805 original size:14 final size:14
Alignment explanation
Indices: 24764781--24764818 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
24764771 ATTAATAACA
*
24764781 AATATTTAATTATAT
1 AATATTAAATTAT-T
24764796 AA-ATTAAATTATT
1 AATATTAAATTATT
24764809 AATATTAAAT
1 AATATTAAAT
24764819 AAAATGTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 3 0.14
14 16 0.76
15 2 0.10
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
AATATTAAATTATT
Found at i:24764810 original size:21 final size:21
Alignment explanation
Indices: 24764786--24764832 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
24764776 TAACAAATAT
*
24764786 TTAATTATATAAATTAAA-TTA
1 TTAATTAT-TAAATAAAAGTTA
24764807 TTAA-TATTAAATAAAATGTTA
1 TTAATTATTAAATAAAA-GTTA
24764828 TTAAT
1 TTAAT
24764833 CAATTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
19 8 0.36
20 3 0.14
21 11 0.50
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (21 bp):
TTAATTATTAAATAAAAGTTA
Found at i:24764944 original size:13 final size:14
Alignment explanation
Indices: 24764926--24764959 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
24764916 ATATCCAAAT
24764926 AATATTTA-TATTA
1 AATATTTATTATTA
24764939 AATA-TTATTATTA
1 AATATTTATTATTA
24764952 AATATTTA
1 AATATTTA
24764960 AATTTATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 3 0.16
13 13 0.68
14 3 0.16
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
AATATTTATTATTA
Found at i:24765105 original size:21 final size:20
Alignment explanation
Indices: 24765079--24765122 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
24765069 AATATTATAA
*
24765079 AATAATTTAATTATTATTTAT
1 AATAATCTAATTATTA-TTAT
*
24765100 AATAATCTAATTGTTATTAT
1 AATAATCTAATTATTATTAT
24765120 AAT
1 AAT
24765123 TAGTATTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (20 bp):
AATAATCTAATTATTATTAT
Found at i:24765232 original size:10 final size:9
Alignment explanation
Indices: 24765146--24765234 Score: 51
Period size: 10 Copynumber: 9.7 Consensus size: 9
24765136 TTTATAATAT
24765146 TAATCTATTA
1 TAAT-TATTA
24765156 TAATTA--A
1 TAATTATTA
*
24765163 TAGTTATATCA
1 TAATTAT-T-A
*
24765174 TAATAATTA
1 TAATTATTA
*
24765183 AACATTATT-
1 TA-ATTATTA
*
24765192 CAATTATTA
1 TAATTATTA
24765201 TAA-TATTA
1 TAATTATTA
*
24765209 TAATTTATAA
1 TAA-TTATTA
24765219 TAATTATTA
1 TAATTATTA
24765228 TTAATTA
1 -TAATTA
24765235 GTTAAATATA
Statistics
Matches: 61, Mismatches: 9, Indels: 18
0.69 0.10 0.20
Matches are distributed among these distances:
7 6 0.10
8 14 0.23
9 12 0.20
10 23 0.38
11 6 0.10
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.48
Consensus pattern (9 bp):
TAATTATTA
Found at i:24765300 original size:40 final size:38
Alignment explanation
Indices: 24765193--24765316 Score: 98
Period size: 38 Copynumber: 3.3 Consensus size: 38
24765183 AACATTATTC
* * *
24765193 AATT-ATT-ATAATATTA-TAATTTATAATAATTATTATT
1 AATTAATTAATAATATAATTAAATTATAAT-ATTAAT-TT
* *
24765230 AATTAGTT-A-AATATAATTAAATTATAATATTGTATTT
1 AATTAATTAATAATATAATTAAATTATAATATT-AATTT
* *
24765267 AA-TAATTAATAATATAATTATATCATATTATATTAATTT
1 AATTAATTAATAATATAATTAAAT--TATAATATTAATTT
24765306 AATTAATTAAT
1 AATTAATTAAT
24765317 TAAAGTTAGT
Statistics
Matches: 70, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
36 4 0.06
37 18 0.26
38 26 0.37
39 6 0.09
40 16 0.23
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.50
Consensus pattern (38 bp):
AATTAATTAATAATATAATTAAATTATAATATTAATTT
Found at i:24766863 original size:180 final size:179
Alignment explanation
Indices: 24766405--24767114 Score: 582
Period size: 180 Copynumber: 4.0 Consensus size: 179
24766395 GTTGTTTCTA
** * **
24766405 TTCATACAAAATTATTCAAAATAAAATAATACTATTTTATT-ACTATTTTAAAAATTAATAAG--
1 TTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAAC-ATTCAAAAAATTAATAAGTA
* * * * * *
24766467 AG-ATTTAAAAACTAAATCTCTTTACTGAACCAGTTTAAATAGTTATGACTATTTGAACAATTAT
65 AGAATTTAAAAA-AAAATCTATTTACCGAATCAGTTCAAATAGTTATGACTATTAGAACAATTAT
* * * ** * * * *
24766531 CTATCTCCAATTGTTAT-AATTTTTGTTTTTTCTTGAAATATTTAATTTATG
129 CTATTTCAAATTGTTATGAACTTTTGTTTAGTCATAAAATAATTAATTCA-G
* * * * * * * * * *
24766582 TTCA-ACAAGCTTATTTAGAGTAAAATATTGCTAAATTAATAATATTCTAAACATTAATAAGTAA
1 TTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAACATTCAAAAAATTAATAAGTAA
* * * * * *
24766646 GGATTTAAAAAATAAATGTGTTTGCTGAATCAGTTCAAATAGTTAAGACTATTAGAACAATTATC
66 GAATTTAAAAAA-AAATCTATTTACCGAATCAGTTCAAATAGTTATGACTATTAGAACAATTATC
* * * *
24766711 TATTTCAAATTGTTTTGACCTTTTGTTTAGTCATAAAATAATTACTTCAA
130 TATTTCAAATTGTTATGAACTTTTGTTTAGTCATAAAATAATTAATTCAG
* * *
24766761 CTCATACATGCTTATTCAAAATAAAATAATACTAATTTATTAACATTCAAAAAATTATTAAGTAA
1 TTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAACATTCAAAAAATTAATAAGTAA
* * * *
24766826 GAAATTAGAAAAAAAATCTATTTACCGAA-CAAGTTCAAATATTTTTGACTATTTGAACAATTAT
66 GAATTTA-AAAAAAAATCTATTTACCGAATC-AGTTCAAATAGTTATGACTATTAGAACAATTAT
* * * * **
24766890 CTTTTTAAAATGGTTATGACCTTATAT-TTTA-TCATAAAATAATTGTTTCAG
129 CTATTTCAAATTGTTATGAACTT-T-TGTTTAGTCATAAAATAATTAATTCAG
* * * * * *
24766941 TTCATAAAAGCTTA-TCTGAAATAAAATAATATTACTTTATTAATATT-ATAAAAATTGATAAGT
1 TTCATACAAGCTTATTC-AAAATAAAATAATACTAATTTATTAACATTCA-AAAAATTAATAAGT
* * * * * *
24767004 TAGAGATTTAAAACATAAATC-AGTTTATCGAATCAGTTCAAATAATTATGGCCATTTA-AACAA
64 AAGA-ATTTAAAA-AAAAATCTA-TTTACCGAATCAGTTCAAATAGTTATGACTA-TTAGAACAA
** * *
24767067 TTATCTATTTCAAATCATCATGAACTTTTGTTTTGTCATAAAATAATT
125 TTATCTATTTCAAATTGTTATGAACTTTTGTTTAGTCATAAAATAATT
24767115 TTTTAAATTA
Statistics
Matches: 424, Mismatches: 89, Indels: 36
0.77 0.16 0.07
Matches are distributed among these distances:
176 42 0.10
177 5 0.01
178 2 0.00
179 75 0.18
180 213 0.50
181 83 0.20
182 4 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (179 bp):
TTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAACATTCAAAAAATTAATAAGTAA
GAATTTAAAAAAAAATCTATTTACCGAATCAGTTCAAATAGTTATGACTATTAGAACAATTATCT
ATTTCAAATTGTTATGAACTTTTGTTTAGTCATAAAATAATTAATTCAG
Found at i:24767209 original size:24 final size:26
Alignment explanation
Indices: 24767176--24767258 Score: 82
Period size: 24 Copynumber: 3.2 Consensus size: 26
24767166 AAACAACATA
*
24767176 ATTAAATTATAATATTAAAATTA-TT
1 ATTAATTTATAATATTAAAATTATTT
* *
24767201 A-TAATTTATATTAAT-AAATTATTT
1 ATTAATTTATAATATTAAAATTATTT
**
24767225 ATTAATTTAATAAATATTATTATTATTT
1 ATTAATTT-AT-AATATTAAAATTATTT
24767253 ATTAAT
1 ATTAAT
24767259 AGTAATTTAT
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
23 6 0.13
24 14 0.30
25 7 0.15
26 2 0.04
27 4 0.09
28 13 0.28
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (26 bp):
ATTAATTTATAATATTAAAATTATTT
Found at i:24767252 original size:20 final size:21
Alignment explanation
Indices: 24767187--24767254 Score: 68
Period size: 21 Copynumber: 3.1 Consensus size: 21
24767177 TTAAATTATA
*
24767187 ATATTAAAATTATTATAATTT
1 ATATTAAAATTATTATTATTT
24767208 ATATTAATAAATTATTTATTAATTT
1 ATATT-A-AAATTA-TTATT-ATTT
24767233 A-A-TAAATATTATTATTATTT
1 ATATTAAA-ATTATTATTATTT
24767253 AT
1 AT
24767255 TAATAGTAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
20 5 0.12
21 12 0.30
22 6 0.15
23 7 0.17
24 5 0.12
25 5 0.12
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
ATATTAAAATTATTATTATTT
Found at i:24767652 original size:6 final size:6
Alignment explanation
Indices: 24767643--24767676 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
24767633 TAATACCTAA
*
24767643 TAATAT TAATAT TAATAT TATTAAT TAATAT TAA
1 TAATAT TAATAT TAATAT TAAT-AT TAATAT TAA
24767677 ATTTATGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TAATAT
Found at i:24767774 original size:21 final size:21
Alignment explanation
Indices: 24767745--24767792 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
24767735 ATAACAAATT
*
24767745 TATTAAACAATTAATTATAAA
1 TATTTAACAATTAATTATAAA
* *
24767766 TATTTAACATTTAATTATAAC
1 TATTTAACAATTAATTATAAA
24767787 TATTTA
1 TATTTA
24767793 TAATTATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (21 bp):
TATTTAACAATTAATTATAAA
Found at i:24767889 original size:10 final size:10
Alignment explanation
Indices: 24767866--24767899 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
24767856 CCCTTTTATT
24767866 TTAATAATTTA
1 TTAATAA-TTA
*
24767877 TTAATAGTTA
1 TTAATAATTA
24767887 TTAATAATTA
1 TTAATAATTA
24767897 TTA
1 TTA
24767900 TCAGATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 15 0.71
11 6 0.29
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (10 bp):
TTAATAATTA
Found at i:24768182 original size:27 final size:28
Alignment explanation
Indices: 24768127--24768182 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
24768117 AATTATTGCT
24768127 TATAATTTATATTATTGAAATAATAATTA
1 TATAATTTATATTATT-AAATAATAATTA
24768156 TATAATATT-TATTATT-AATAATAATTA
1 TATAAT-TTATATTATTAAATAATAATTA
24768183 ATTTATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 11 0.42
29 13 0.50
30 2 0.08
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (28 bp):
TATAATTTATATTATTAAATAATAATTA
Found at i:24768190 original size:27 final size:26
Alignment explanation
Indices: 24768129--24768190 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
24768119 TTATTGCTTA
24768129 TAATTTATA-TTATTGAAATAATAAT
1 TAATTTATATTTATTGAAATAATAAT
*
24768154 T-ATATAATATTTATT-ATTAATAATAAT
1 TAAT-TTATATTTATTGA--AATAATAAT
24768181 TAATTTATAT
1 TAATTTATAT
24768191 ATACTTATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
24 2 0.07
25 6 0.20
26 5 0.17
27 15 0.50
28 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (26 bp):
TAATTTATATTTATTGAAATAATAAT
Found at i:24768660 original size:23 final size:21
Alignment explanation
Indices: 24768601--24768660 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 21
24768591 TATTAACATA
24768601 AAATTAGATTATAATTTATAGT
1 AAATTA-ATTATAATTTATAGT
*
24768623 ATAA-TAATATCTAATTTATTAGTT
1 A-AATTAAT-TATAATTTA-TAG-T
24768647 AAATTAATTATAAT
1 AAATTAATTATAAT
24768661 AATTATTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
21 2 0.06
22 11 0.35
23 12 0.39
24 6 0.19
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (21 bp):
AAATTAATTATAATTTATAGT
Found at i:24768942 original size:19 final size:18
Alignment explanation
Indices: 24768904--24768952 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
24768894 CAAATTATAA
**
24768904 AAATTATTAATAATTGTT
1 AAATTATTAATAATAATT
*
24768922 AATATTATTATTAATAATT
1 AA-ATTATTAATAATAATT
24768941 AAATTA-TAATAA
1 AAATTATTAATAA
24768953 ATATATATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 5 0.19
18 6 0.23
19 15 0.58
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
AAATTATTAATAATAATT
Found at i:24769978 original size:17 final size:17
Alignment explanation
Indices: 24769924--24769988 Score: 71
Period size: 17 Copynumber: 3.8 Consensus size: 17
24769914 AATATAAACC
24769924 ATATTAAAATAATAAATTA
1 ATATTAAAAT--TAAATTA
** *
24769943 AT-TTATTATTTAA-TA
1 ATATTAAAATTAAATTA
24769958 ATATTAAAATTAAATTA
1 ATATTAAAATTAAATTA
24769975 ATATTAAAATTAAA
1 ATATTAAAATTAAA
24769989 ATCCTTATAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
15 4 0.11
16 11 0.29
17 16 0.42
18 5 0.13
19 2 0.05
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATTAAAATTAAATTA
Found at i:24769986 original size:23 final size:23
Alignment explanation
Indices: 24769924--24769990 Score: 62
Period size: 27 Copynumber: 2.7 Consensus size: 23
24769914 AATATAAACC
* *
24769924 ATATTAAAATAATAAATTAATTTA
1 ATATTAAAATTA-AAATTAAATTA
*
24769948 TTATTTAATAATATTAAAATTAAATTA
1 ATA-TT-A-AA-ATTAAAATTAAATTA
24769975 ATATTAAAATTAAAAT
1 ATATTAAAATTAAAAT
24769991 CCTTATAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
23 8 0.23
24 4 0.11
25 3 0.09
26 3 0.09
27 14 0.40
28 3 0.09
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
ATATTAAAATTAAAATTAAATTA
Found at i:24770759 original size:24 final size:25
Alignment explanation
Indices: 24770732--24770784 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
24770722 TATCTAATAG
24770732 TTATATAA-TT-ATAACTAATTATAA
1 TTATATAATTTAATAACTAATTA-AA
*
24770756 TTAT-TAATTTAATAACTATTTAAA
1 TTATATAATTTAATAACTAATTAAA
24770780 TTATA
1 TTATA
24770785 AAAATATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 3 0.12
24 12 0.48
25 10 0.40
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (25 bp):
TTATATAATTTAATAACTAATTAAA
Found at i:24771688 original size:181 final size:180
Alignment explanation
Indices: 24771214--24772830 Score: 1315
Period size: 181 Copynumber: 9.0 Consensus size: 180
24771204 ATCTATTTCA
* * * * * * *
24771214 ATGACCTTTTGCTTTGTCATAAAAGAATTGTTTCAATTCATATAAACTTATTCAAAATAAAATAA
1 ATGACTTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTC-AAATAAAATAA
* * * * * * * * *
24771279 TACTAATTTATTAATAATCCAAAAATTTATAA-TAAAAAGATTTAAAAAATGATTCTGTTTTCTA
65 TACTAATTTATTAATATTCTAAAAATTAATAAGT-AAAAGATTTAAAAAATAAATATATTTACCA
* * * * * * * * *
24771343 AACAAATTTAAATAATTAGGACTTTTTAAATAATTATCTATTTGAAAT-AGCT
129 AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA-TT
* * * * * *
24771395 ATAACCTTTTGTTTTGTCATAAAAGAATTTTTTTCTGTTTAT-CTAAGCTTATTTCAAATAAAAT
1 ATGACTTTTTGTTTTGTCATAAAACAA-TTATTTCTATTCATAC-AAGCTTA-TTCAAATAAAAT
* *
24771459 AATA-AATATTTATTAATA-T-TAAGATAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTT
63 AATACTA-ATTTATTAATATTCTAA-A-AATTAATAAGTAAAAGATTTAAAAAATAAATATATTT
* * * * * * **
24771521 ACCAAACAAGTTCAAATCA-TTATGGCTATTCGAGCAATTATTTATTTTAACTTGTT
125 ACCAAACAAGTTCAAAT-AGTTATGACTATTTGAACAATTATCTATTTCAAATCATT
* * * *
24771577 ATGACTTTTTGTTTTGTCATAAAATAATTATTTATGTTCATACAAGTTTATTCAAATTAAAATAA
1 ATGACTTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTCAAA-TAAAATAA
* * * * * * * *
24771642 TATTAGTTTATAAATATTTTGACAATTAATAAGTAAAAGATTTAAAAAATAAATATACTTACTAA
65 TACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTACCAA
* * *
24771707 ACAAGTTCAAATAGTAATGAATATTTGAATAATTATCTATTTCAAATCATT
130 ACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATT
* * * * * * * * * *
24771758 ATGACCTTTTCTTTTGTAATAAAACACTTGTTTCAATTCATATAAGCTTATTTGAAGTAAGATAA
1 ATGACTTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTA-TTCAAATAAAATAA
* * * * * *
24771823 TACTAATTCATTAATATTCTAAAAATTAATGAGTAAGAGAATTAAAAAA-AGAATATGTTTACCG
65 TACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATA-AATATATTTACCA
* * * *
24771887 AATAAGTTCAAATAGTTATGACTATCTAAACAATTATCTATTTCAAAACATT
129 AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATT
* ** * * *
24771939 ATGA-TCTTTTGTTTTGTCATTAAACAATTGGTTCTATCCATGCAAGCTTATTTCAAATAAAGTA
1 ATGACT-TTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTA-TTCAAATAAAATA
* * * * *
24772003 AT-TTAAATTTATTAATATTCCAAAAATTAATAAGTAAAA-CTTTAAAAAATAAATATATTTTCT
64 ATACT-AATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTACC
* * * *
24772066 GAACAATTTCAAATAGTTATGACTATTTGAAGAATTATCTATTTCAAATCGTT
128 AAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATT
* * * * * * * *
24772119 ATAACCTTTTGTTTTGTCATAAACCAACTATTTGTATTCATAAAAGCTTTTTTGAAATAAAATAA
1 ATGACTTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGC-TTATTCAAATAAAATAA
* * * * * * * *
24772184 TACTAATTTATTAAAATT-TCAAATATTAATAAATAGAATATTTAAAAAATAAATCTATTTATCG
65 TACTAATTTATTAATATTCT-AAAAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTACCA
* * * * * **
24772248 AGCAAGTTCAAATAGTTATGACTATTGGAATAATTATTTACTTCAAATTGTT
129 AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATT
* ** *
24772300 ATGA-TCTTTTGTTTTGTCATAAAACAATTATTTCTATTTATACAATTTTATTTGAAATAAAATA
1 ATGACT-TTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTA-TTCAAATAAAATA
* *** * *
24772364 ATACTAATTTATTAGTATTCTAAAAATTAATAAGTTTGAGATTTAAAAAATAAATTTGTTTACCA
64 ATACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTACCA
* ** * *
24772429 AACAAGTTCAAATAGTCATGTTTATTTGAACTATTATCTATTTCAAATCATA
129 AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATT
* * *
24772481 ATGACATTTTGTTTTGTCATAAAACAATTATTTCTATTCATGTACAA--TTATTTAGAATATAAT
1 ATGACTTTTTGTTTTGTCATAAAACAATTATTTCTATTCA--TACAAGCTTATTCA-AATAAAAT
* * ** * * * *
24772544 AATAATGAGCTATTAATATTTTGATAATTAATAAG----AGATTTAAAAACA-AAATCTATTTAC
63 AATACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAA-ATAAATATATTTAC
* * * *
24772604 CTAAA-TAGTTCAAATATTTATGACTATTTGAACAATTATCTATCTCAAATCTTT
127 C-AAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATT
* * * * * *** * *
24772658 ATGA-TCTTTATTTTGTCATAAAACAAATGTTTCTTTTTCATATTGGCTTATTCAATTCAAATAA
1 ATGACTTTTTGTTTTGTCATAAAACAATTATTTC-TATTCATACAAGCTTATTCAAATAAAATAA
* * * * * * *
24772722 TACTAATTTAATAATATTCCAAAAA-T--T-AGGAAGAGATTTAAAAAAATAAATGTGTTTGCCA
65 TACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTT-AAAAAATAAATATATTTACCA
* * * * *
24772783 AACCAGTTCAAATAGTTAAGAATATTAGAATAATTATCTATTTCAAAT
129 AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAAT
24772831 AATAAGTGTT
Statistics
Matches: 1149, Mismatches: 243, Indels: 92
0.77 0.16 0.06
Matches are distributed among these distances:
172 2 0.00
173 1 0.00
175 3 0.00
176 57 0.05
177 130 0.11
178 4 0.00
180 155 0.13
181 645 0.56
182 140 0.12
183 12 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.41
Consensus pattern (180 bp):
ATGACTTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTCAAATAAAATAAT
ACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTACCAAA
CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATT
Found at i:24772281 original size:542 final size:541
Alignment explanation
Indices: 24771214--24772830 Score: 1464
Period size: 542 Copynumber: 3.0 Consensus size: 541
24771204 ATCTATTTCA
* **
24771214 ATGACCTTTTGC-TTTGTCATAAAAGAATTGTTTCAATTCATATAAACTTATTCAAAATAAAATA
1 ATGACCTTTT-CTTTTGTCATAAAACAATTGTTTCAATTCATATAAACTTATTTGAAATAAAATA
* * * * * * * * * *
24771278 ATACTAATTTATTAATAATCCAAAAATTTATAATAAAAAGATTTAAAAAATGATTCTGTTTTCTA
65 ATACTAATTTATTAATATTCTAAAAATTAATAGT-AAGAGATTTAAAAAAAGAATATGTTTACCA
* * * * * * * *
24771343 AACAAATTTAAATAATTAGGACTTTTTAAATAATTATCTATTTGAAATAGC--TATAACCTTTTG
129 AACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAA-A-CATTATGA-CTTTTG
* ** * **
24771406 TTTTGTCATAAAAGAATTTTTTTCTGTTTATCTAAGCTTATTTCAAATAAAATAATAAATATTTA
191 TTTTGTCATAAAACAA-TTGGTTCTATCCATCTAAGCTTATTTCAAATAAAATAATAAATATTTA
*
24771471 TTAATATTAAGATAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCAA
255 TTAATATTAAGATAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTACCAAACAAGTTCAA
* * * * * * *
24771536 ATCATTATGGCTATTCGAGCAATTATTTATTTTAACTTGTTATGACTTTTTGTTTTGTCATAAAA
320 ATCATTATGACTATTCGAGCAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAA
* * * * * * * *
24771601 TAATTATTTATGTTCATACAAGTTTATTCAAATTAAAATAATATTAGTTTATAAATATTTTGACA
385 CAACTATTTATATTCATAAAAGTTTATTCAAATTAAAATAATACTAATTTATAAATATTTTCAAA
*
24771666 ATTAATAAGTAAAAGATTTAAAAAATAAATATACTTACTAAACAAGTTCAAATAGTAATGAATAT
450 ATTAATAAATAAAAGATTTAAAAAATAAATATACTTACTAAACAAGTTCAAATAGTAATGAATAT
* *
24771731 TTGAATAATTATCTATTTCAAATCATT
515 TGGAATAATTATCTACTTCAAATCATT
* * * * *
24771758 ATGACCTTTTCTTTTGTAATAAAACACTTGTTTCAATTCATATAAGCTTATTTGAAGTAAGATAA
1 ATGACCTTTTCTTTTGTCATAAAACAATTGTTTCAATTCATATAAACTTATTTGAAATAAAATAA
* * *
24771823 TACTAATTCATTAATATTCTAAAAATTAATGAGTAAGAGAATTAAAAAAAGAATATGTTTACCGA
66 TACTAATTTATTAATATTCTAAAAATTAAT-AGTAAGAGATTTAAAAAAAGAATATGTTTACCAA
* *
24771888 ATAAGTTCAAATAGTTATGACTATCTAAACAATTATCTATTTCAAAACATTATGATCTTTTGTTT
130 ACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAAACATTATGA-CTTTTGTTT
* * *
24771953 TGTCATTAAACAATTGGTTCTATCCATGC-AAGCTTATTTCAAATAAAGTAATTTAA-ATTTATT
194 TGTCATAAAACAATTGGTTCTATCCAT-CTAAGCTTATTTCAAATAAAATAA-TAAATATTTATT
* * ** *
24772016 AATATTCCAA-A-AATTAATAAGTAAAA-CTTTAAAAAATAAATATATTTTCTGAACAATTTCAA
257 AATATT--AAGATAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTACCAAACAAGTTCAA
*
24772078 AT-AGTTATGACTATTTGAAG-AATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAA
320 ATCA-TTATGACTATTCG-AGCAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAA
* * * *
24772141 ACCAACTATTTGTATTCATAAAAGCTTTTTTGAAA-TAAAATAATACTAATTTATTAAA-A-TTT
383 AACAACTATTTATATTCATAAAAG-TTTATTCAAATTAAAATAATACTAATTTA-TAAATATTTT
* * * * * * *
24772203 CAAATATTAATAAATAGAATATTTAAAAAATAAATCTATTTA-TCGAGCAAGTTCAAATAGTTAT
446 CAAA-ATTAATAAATAAAAGATTTAAAAAATAAATATACTTACT-AAACAAGTTCAAATAGTAAT
* * **
24772267 GACTATTGGAATAATTATTTACTTCAAATTGTT
509 GAATATTGGAATAATTATCTACTTCAAATCATT
* * * * * * **
24772300 ATGATCTTTTGTTTTGTCATAAAACAATTATTTCTATTTATACAATTTTATTTGAAATAAAATAA
1 ATGACCTTTTCTTTTGTCATAAAACAATTGTTTCAATTCATATAAACTTATTTGAAATAAAATAA
* ** *
24772365 TACTAATTTATTAGTATTCTAAAAATTAATAAGTTTGAGATTTAAAAAATA-AATTTGTTTACCA
66 TACTAATTTATTAATATTCTAAAAATTAAT-AGTAAGAGATTTAAAAAA-AGAATATGTTTACCA
* ** * * * *
24772429 AACAAGTTCAAATAGTCATGTTTATTTGAACTATTATCTATTTCAAATCATAATGACATTTTGTT
129 AACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAAACATTATGAC-TTTTGTT
** * * * * **
24772494 TTGTCATAAAACAATTATTTCTATTCATGTACA-ATTATTT-AGAATATAATAAT-AATGAGCTA
193 TTGTCATAAAACAATTGGTTCTATCCATCTA-AGCTTATTTCA-AATAAAATAATAAAT-ATTTA
** * *
24772556 TTAATATTTTGATAATTAATAAG----AGATTTAAAAACA-AAATCTATTTACCTAAA-TAGTTC
255 TTAATATTAAGATAATTAATAAGTAAAAGATTTAAAAA-ATAAATATATTTACC-AAACAAGTTC
* * * * * * *
24772615 AAAT-ATTTATGACTATTTGAACAATTATCTATCTCAAATCTTTATGATC-TTTATTTTGTCATA
318 AAATCA-TTATGACTATTCGAGCAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATA
* * * * *** * *
24772678 AAACAAATGTTTCTTTTTCATATTGGCTTATTC-AATTCAAATAATACTAATTTA-ATAATA--T
382 AAACAACTATTT-ATATTCATAAAAGTTTATTCAAATTAAAATAATACTAATTTATA-AATATTT
* * ** * * ** * * *
24772739 TCCAAA--AATTAGGAAGAGATTTAAAAAAATAAATGTGTTTGCCAAACCAGTTCAAATAGTTAA
445 TCAAAATTAATAAATAAAAGATTT-AAAAAATAAATATACTTACTAAACAAGTTCAAATAG-TAA
* *
24772802 -GAATATTAGAATAATTATCTATTTCAAAT
508 TGAATATTGGAATAATTATCTACTTCAAAT
24772831 AATAAGTGTT
Statistics
Matches: 872, Mismatches: 167, Indels: 77
0.78 0.15 0.07
Matches are distributed among these distances:
534 10 0.01
535 53 0.06
536 4 0.00
537 9 0.01
538 46 0.05
539 71 0.08
540 5 0.01
541 11 0.01
542 413 0.47
543 76 0.09
544 170 0.19
545 4 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.41
Consensus pattern (541 bp):
ATGACCTTTTCTTTTGTCATAAAACAATTGTTTCAATTCATATAAACTTATTTGAAATAAAATAA
TACTAATTTATTAATATTCTAAAAATTAATAGTAAGAGATTTAAAAAAAGAATATGTTTACCAAA
CAAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAAACATTATGACTTTTGTTTTG
TCATAAAACAATTGGTTCTATCCATCTAAGCTTATTTCAAATAAAATAATAAATATTTATTAATA
TTAAGATAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTACCAAACAAGTTCAAATCATT
ATGACTATTCGAGCAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAACTA
TTTATATTCATAAAAGTTTATTCAAATTAAAATAATACTAATTTATAAATATTTTCAAAATTAAT
AAATAAAAGATTTAAAAAATAAATATACTTACTAAACAAGTTCAAATAGTAATGAATATTGGAAT
AATTATCTACTTCAAATCATT
Found at i:24772320 original size:723 final size:719
Alignment explanation
Indices: 24771226--24772683 Score: 1674
Period size: 723 Copynumber: 2.0 Consensus size: 719
24771216 GACCTTTTGC
* * * * ** * * *
24771226 TTTGTCATAAAAGAATTGTTTCAATTCATATAAACTTA-TTCAAAATAAAATAATACT-AATTTA
1 TTTGTCATAAAACAATTGGTTCTATCCATGCAAGCTTATTTC-AAATAAAGTAAT-TTAAATTTA
* * * * *
24771289 TTAATAATCCAAAAATTTATAATAAAAAGATTTAAAAAATGATTCTGTTTTCTAAACAAATTTAA
64 TTAATAATCCAAAAATTAATAATAAAAAGATTTAAAAAATAAATATATTTTCTAAACAAATTTAA
* * *
24771354 ATAATTAGGACTTTTTAAATAATTATCTATTTGAAATAGCTATAACCTTTTGTTTTGTCATAAAA
129 ATAATTAGGACTATTTAAAGAATTATCTATTTCAAATAGCTATAACCTTTTGTTTTGTCATAAAA
* * * * * ** *
24771419 GAATTTTTTTCTGTTTATCTAAGCTTATTTCAAATAAAATAATAAATATTTATTAATATTAAGAT
194 CAATCTATTTCTATTCATAAAAGCTTATTTCAAATAAAATAATAAATATTTATTAAAATTAAGAT
* *
24771484 AATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCAAATCATTATGGCTA
259 AATTAATAAATAAAAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCAAATCATTATGACTA
* * * * * *
24771549 TTCGAGCAATTATTTATTTTAACTTGTTATGACTTTTTGTTTTGTCATAAAATAATTATTTATGT
324 TTCGAACAATTATTTACTTCAAATTGTTATGACTTTTTGTTTTGTCATAAAACAATTATTTATAT
* * * * *
24771614 TCATACAAGTTTA-TTCAAATTAAAATAATATTAGTTTATAAATATTTTGACAATTAATAAGTAA
389 TCATACAAGTTTATTTCAAA-TAAAATAATACTAATTTATAAATATTCTAAAAATTAATAAGTAA
*
24771678 AAGATTTAAAAAATAAATATACTTACTAAACAAGTTCAAATAGTAATGAATATTTGAA-TAATTA
453 AAGATTTAAAAAATAAATATACTTACCAAACAAGTTCAAATAGTAATGAATATTTGAACT-ATTA
* * * * *
24771742 TCTATTTCAAATCATTATGACCTTTTCTTTTGTAATAAAACACTTGTTTCAATTCATATA-AGCT
517 TCTATTTCAAATCATAATGACATTTTCTTTTGTAATAAAACAATTATTTCAATTCATATACA-AT
* *
24771806 TATTTGAAGTAAGATAATACTAAT-TC-ATTAATATTCTAAAAATTAATGAGTAAGAGAATTAAA
581 TATTT--AG-AAGATAATAATAATAGCTATTAATATTCTAAAAATT-A--A-TAAGAGAATTAAA
* *
24771869 AA-AAGAATATGTTTACCG-AATAAGTTCAAATAGTTATGACTATCTAAACAATTATCTATTTCA
639 AACAA-AATATATTTACCGAAAT-AGTTCAAATAGTTATGACTATCTAAACAATTATCTATCTCA
*
24771932 AAACATTATGATCTTTTGT
702 AAACATTATGATC-TTTAT
*
24771951 TTTGTCATTAAACAATTGGTTCTATCCATGCAAGCTTATTTCAAATAAAGTAATTTAAATTTATT
1 TTTGTCATAAAACAATTGGTTCTATCCATGCAAGCTTATTTCAAATAAAGTAATTTAAATTTATT
* * *
24772016 AATATTCCAAAAATTAATAAGT-AAAA-CTTTAAAAAATAAATATATTTTCTGAAC-AATTTCAA
66 AATAATCCAAAAATTAATAA-TAAAAAGATTTAAAAAATAAATATATTTTCTAAACAAATTT-AA
* * * * * *
24772078 ATAGTTATGACTATTTGAAGAATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAC
129 ATAATTAGGACTATTTAAAGAATTATCTATTTCAAATAGCTATAACCTTTTGTTTTGTCATAAAA
* * * *
24772143 CAA-CTATTTGTATTCATAAAAGCTTTTTTGAAATAAAATAAT-ACTAATTTATTAAAATTTCAA
194 CAATCTATTTCTATTCATAAAAGCTTATTTCAAATAAAATAATAAAT-ATTTATTAAAA-TT-AA
* * * * *
24772206 -AT-ATTAATAAATAGAATATTTAAAAAATAAATCTATTTATCGAGCAAGTTCAAAT-AGTTATG
256 GATAATTAATAAATAAAAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCAAATCA-TTATG
* *
24772268 ACTATTGGAATAATTATTTACTTCAAATTGTTATGA-TCTTTTGTTTTGTCATAAAACAATTATT
320 ACTATTCGAACAATTATTTACTTCAAATTGTTATGACT-TTTTGTTTTGTCATAAAACAATTATT
* * * * * *
24772332 TCTATTTATACAATTTTATTTGAAATAAAATAATACTAATTTATTAGTATTCTAAAAATTAATAA
384 TATATTCATACAAGTTTATTTCAAATAAAATAATACTAATTTATAAATATTCTAAAAATTAATAA
*** * ** * **
24772397 GTTTGAGATTTAAAAAATAAATTTGTTTACCAAACAAGTTCAAATAGTCATGTTTATTTGAACTA
449 GTAAAAGATTTAAAAAATAAATATACTTACCAAACAAGTTCAAATAGTAATGAATATTTGAACTA
* * * *
24772462 TTATCTATTTCAAATCATAATGACATTTTGTTTTGTCATAAAACAATTATTTCTATTCATGTACA
514 TTATCTATTTCAAATCATAATGACATTTTCTTTTGTAATAAAACAATTATTTCAATTCATATACA
* * * * *
24772527 ATTATTTAGAATATAATAATAATGAGCTATTAATATTTTGATAATTAATAAGAGATTTAAAAACA
579 ATTATTTAGAAGATAATAATAAT-AGCTATTAATATTCTAAAAATTAATAAGAGAATTAAAAACA
* * * * * * *
24772592 AAATCTATTTACCTAAATAGTTCAAATATTTATGACTATTTGAACAATTATCTATCTCAAATCTT
643 AAATATATTTACCGAAATAGTTCAAATAGTTATGACTATCTAAACAATTATCTATCTCAAAACAT
24772657 TATGATCTTTAT
708 TATGATCTTTAT
24772669 TTTGTCATAAAACAA
1 TTTGTCATAAAACAA
24772684 ATGTTTCTTT
Statistics
Matches: 614, Mismatches: 102, Indels: 41
0.81 0.13 0.05
Matches are distributed among these distances:
718 18 0.03
719 72 0.12
720 18 0.03
721 2 0.00
722 6 0.01
723 327 0.53
724 94 0.15
725 73 0.12
726 4 0.01
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (719 bp):
TTTGTCATAAAACAATTGGTTCTATCCATGCAAGCTTATTTCAAATAAAGTAATTTAAATTTATT
AATAATCCAAAAATTAATAATAAAAAGATTTAAAAAATAAATATATTTTCTAAACAAATTTAAAT
AATTAGGACTATTTAAAGAATTATCTATTTCAAATAGCTATAACCTTTTGTTTTGTCATAAAACA
ATCTATTTCTATTCATAAAAGCTTATTTCAAATAAAATAATAAATATTTATTAAAATTAAGATAA
TTAATAAATAAAAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCAAATCATTATGACTATT
CGAACAATTATTTACTTCAAATTGTTATGACTTTTTGTTTTGTCATAAAACAATTATTTATATTC
ATACAAGTTTATTTCAAATAAAATAATACTAATTTATAAATATTCTAAAAATTAATAAGTAAAAG
ATTTAAAAAATAAATATACTTACCAAACAAGTTCAAATAGTAATGAATATTTGAACTATTATCTA
TTTCAAATCATAATGACATTTTCTTTTGTAATAAAACAATTATTTCAATTCATATACAATTATTT
AGAAGATAATAATAATAGCTATTAATATTCTAAAAATTAATAAGAGAATTAAAAACAAAATATAT
TTACCGAAATAGTTCAAATAGTTATGACTATCTAAACAATTATCTATCTCAAAACATTATGATCT
TTAT
Found at i:24773370 original size:17 final size:18
Alignment explanation
Indices: 24773328--24773374 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
24773318 ATTAATTAAG
*
24773328 ATAATAATTAAACTACTAT
1 ATAATAATT-AACTAATAT
24773347 ATAATAATTAA-TAATAT
1 ATAATAATTAACTAATAT
*
24773364 TTAATAATTAA
1 ATAATAATTAA
24773375 AGTACTACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 15 0.58
18 2 0.08
19 9 0.35
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAATAATTAACTAATAT
Found at i:24773645 original size:15 final size:16
Alignment explanation
Indices: 24773615--24773649 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
24773605 TAACAATTAT
*
24773615 TTATTTGAATTTAATA
1 TTATTTGAATTAAATA
24773631 TTATTT-AATTAAATA
1 TTATTTGAATTAAATA
24773646 TTAT
1 TTAT
24773650 ATATTGTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (16 bp):
TTATTTGAATTAAATA
Found at i:24773651 original size:20 final size:20
Alignment explanation
Indices: 24773610--24773654 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
24773600 AATTTTAACA
* *
24773610 ATTATTTATTTGAATTTAAT
1 ATTATTTAATTAAATTTAAT
24773630 ATTATTTAATTAAATATTATAT
1 ATTATTTAATTAAAT-TTA-AT
24773652 ATT
1 ATT
24773655 GTACATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.62
21 3 0.14
22 5 0.24
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
ATTATTTAATTAAATTTAAT
Found at i:24773734 original size:22 final size:21
Alignment explanation
Indices: 24773706--24773773 Score: 66
Period size: 22 Copynumber: 3.2 Consensus size: 21
24773696 ATTTTATATG
24773706 TATTATATAAATATTAAGTAAT
1 TATTATATAAATATTAA-TAAT
* *
24773728 TATTATATAATTTATTTATAAT
1 TATTATATAA-ATATTAATAAT
* * *
24773750 T-TAATATAAATATAAATATT
1 TATTATATAAATATTAATAAT
24773770 TATT
1 TATT
24773774 TGAACAATTA
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
20 8 0.22
21 8 0.22
22 15 0.42
23 5 0.14
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (21 bp):
TATTATATAAATATTAATAAT
Found at i:24774565 original size:139 final size:139
Alignment explanation
Indices: 24774323--24774579 Score: 324
Period size: 139 Copynumber: 1.8 Consensus size: 139
24774313 TAAGACTATA
* ** * *
24774323 TGAACAATTATCTATTTTAAATCGTTATGACATTTTGTTTTGTCATAAAACAATTTTTTCAATTC
1 TGAACAATTATCTATTTCAAATAATTATGACATTTTATTTTGTCATAAAACAATTTTTT-AATCC
*
24774388 ATACTAGCTTATTCAGAATAAAATAAAATGAATTTATTAATA-TTTAAAAAATTTAACAAATAAT
65 ATACTAGCTTATTCAGAATAAAATAAAATGAATCTATTAATATTTTAAAAAATTTAACAAATAAT
24774452 TATGATTATT
130 TATGATTATT
* *
24774462 TGAACAATTATTTATTTCAAATAATTATGACCTTTTATTTTGTCATAAAACAAATGTTTTT-ATC
1 TGAACAATTATCTATTTCAAATAATTATGACATTTTATTTTGTCATAAAAC-AAT-TTTTTAATC
* * * * *
24774526 CATA-TAAGTTTATTCGGAATAAATTAATACT-ACTCTATTAATATTTTAAAAAAT
64 CATACT-AGCTTATTCAGAATAAAATAA-AATGAATCTATTAATATTTTAAAAAAT
24774580 AATAATAGAT
Statistics
Matches: 100, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
138 1 0.01
139 79 0.79
140 15 0.15
141 5 0.05
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (139 bp):
TGAACAATTATCTATTTCAAATAATTATGACATTTTATTTTGTCATAAAACAATTTTTTAATCCA
TACTAGCTTATTCAGAATAAAATAAAATGAATCTATTAATATTTTAAAAAATTTAACAAATAATT
ATGATTATT
Found at i:24774988 original size:20 final size:20
Alignment explanation
Indices: 24774965--24775022 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
24774955 CAGCCATTAT
24774965 TATTAATATTAATAATTCAA
1 TATTAATATTAATAATTCAA
* *
24774985 TATTATTATTAA-AATATTAA
1 TATTAATATTAATAAT-TCAA
24775005 T-TTAAATAATTAATAATT
1 TATT-AAT-ATTAATAATT
24775023 AATTATTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
19 5 0.16
20 17 0.55
21 6 0.19
22 3 0.10
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
TATTAATATTAATAATTCAA
Found at i:24775012 original size:26 final size:25
Alignment explanation
Indices: 24774960--24775012 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
24774950 CTATTCAGCC
*
24774960 ATTATTATTAATATTAATAATTCAAT
1 ATTATTATTAATATTAAT-ATTAAAT
24774986 ATTATTATTAAAATATTAAT-TTAAAT
1 ATTATTATT--AATATTAATATTAAAT
24775012 A
1 A
24775013 ATTAATAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 15 0.62
28 9 0.38
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (25 bp):
ATTATTATTAATATTAATATTAAAT
Found at i:24775017 original size:41 final size:42
Alignment explanation
Indices: 24774965--24775074 Score: 117
Period size: 41 Copynumber: 2.7 Consensus size: 42
24774955 CAGCCATTAT
*
24774965 TATT-AAT-ATTAATAATTCAATATTATTATTAA-AATATTAA
1 TATTAAATAATTAATAATTCAATATTATTATTAATAA-AATAA
*
24775005 T-TTAAATAATTAATAATT-AATTATTTTTAATTAATAAAATAA
1 TATTAAATAATTAATAATTCAA-TATTATT-ATTAATAAAATAA
*
24775047 TATTAAATAA-TAAT-ATTCCATATTATTA
1 TATTAAATAATTAATAATTCAATATTATTA
24775075 ATTTGTTAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
39 2 0.03
40 7 0.12
41 25 0.42
42 15 0.25
43 10 0.17
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (42 bp):
TATTAAATAATTAATAATTCAATATTATTATTAATAAAATAA
Found at i:24775690 original size:9 final size:9
Alignment explanation
Indices: 24775678--24775710 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
24775668 AATGATAATC
24775678 TATTATTAA
1 TATTATTAA
24775687 TATTAATT-A
1 TATT-ATTAA
24775696 TATTATTAA
1 TATTATTAA
24775705 TATTAT
1 TATTAT
24775711 AAAATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 3 0.14
9 16 0.73
10 3 0.14
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
TATTATTAA
Found at i:24775716 original size:28 final size:27
Alignment explanation
Indices: 24775685--24775772 Score: 76
Period size: 28 Copynumber: 3.1 Consensus size: 27
24775675 ATCTATTATT
24775685 AATATTAATTATATTATTAATATTATAA
1 AATA-TAATTATATTATTAATATTATAA
*
24775713 AATATATATT-TCTTATTAATTATTA-AA
1 AATATA-ATTATATTATTAA-TATTATAA
24775740 TAATATAA-TA-ATTATTAGATATATTATAA
1 -AATATAATTATATTATT--A-ATATTATAA
24775769 AATA
1 AATA
24775773 ATATTAAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 16
0.74 0.03 0.24
Matches are distributed among these distances:
26 6 0.12
27 13 0.26
28 28 0.56
29 3 0.06
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (27 bp):
AATATAATTATATTATTAATATTATAA
Found at i:24775907 original size:18 final size:17
Alignment explanation
Indices: 24775882--24775915 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
24775872 TATTAGTTTT
*
24775882 GATAATATTATTAATAC
1 GATAATATTATAAATAC
24775899 GATATATATTATAAATA
1 GATA-ATATTATAAATA
24775916 TTTATTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.41
Consensus pattern (17 bp):
GATAATATTATAAATAC
Found at i:24776591 original size:19 final size:19
Alignment explanation
Indices: 24776564--24776605 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
24776554 ATTGTTCAAA
*
24776564 TAGTAATAACTATTTGAAC
1 TAGTAATAACTATTTAAAC
* *
24776583 TAGTCATAATTATTTAAAC
1 TAGTAATAACTATTTAAAC
24776602 TAGT
1 TAGT
24776606 TTGGTAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (19 bp):
TAGTAATAACTATTTAAAC
Found at i:24777243 original size:23 final size:23
Alignment explanation
Indices: 24777217--24777265 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
24777207 TTAAATATTA
24777217 ATATAA-TATTATTATATAAGATT
1 ATATAATTATTATTATATAAG-TT
* *
24777240 ATATAATTGTTATTATATTAGTT
1 ATATAATTATTATTATATAAGTT
24777263 ATA
1 ATA
24777266 ATTGATAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (23 bp):
ATATAATTATTATTATATAAGTT
Found at i:24778302 original size:26 final size:28
Alignment explanation
Indices: 24778242--24778303 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 28
24778232 TACAAATAAT
24778242 ATATAATATATATTTATATATTTGAATA
1 ATATAATATATATTTATATATTTGAATA
*
24778270 ATATAATAT-TATTT-TACTATTTGATTA
1 ATATAATATATATTTATA-TATTTGAATA
24778297 AT-TAATA
1 ATATAATA
24778304 ATTGTTGAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 7 0.22
27 16 0.50
28 9 0.28
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (28 bp):
ATATAATATATATTTATATATTTGAATA
Found at i:24778398 original size:18 final size:18
Alignment explanation
Indices: 24778375--24778427 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
24778365 TTAATTTATC
24778375 ATTAATTTTATAATATTA
1 ATTAATTTTATAATATTA
* *
24778393 ATTAATTATAAAATATT-
1 ATTAATTTTATAATATTA
*
24778410 A-TAATACTTATAATATTA
1 ATTAAT-TTTATAATATTA
24778428 TAATTAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
16 4 0.14
17 9 0.32
18 15 0.54
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTAATTTTATAATATTA
Found at i:24778426 original size:17 final size:17
Alignment explanation
Indices: 24778382--24778431 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
24778372 ATCATTAATT
*
24778382 TTATAATATTA-ATTAA
1 TTATAATATTATAATAA
*
24778398 TTATAAAATATTATAATAC
1 TTAT--AATATTATAATAA
24778417 TTATAATATTATAAT
1 TTATAATATTATAAT
24778432 TAATATTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
16 4 0.14
17 11 0.38
18 7 0.24
19 7 0.24
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
TTATAATATTATAATAA
Found at i:24778773 original size:13 final size:13
Alignment explanation
Indices: 24778755--24778781 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
24778745 TATATTAATA
24778755 AATTTAATATATT
1 AATTTAATATATT
24778768 AATTTAATATATT
1 AATTTAATATATT
24778781 A
1 A
24778782 TAATTAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AATTTAATATATT
Found at i:24778786 original size:28 final size:30
Alignment explanation
Indices: 24778745--24778800 Score: 73
Period size: 28 Copynumber: 1.9 Consensus size: 30
24778735 TAATTAATTG
*
24778745 TATATTAATAAATTTAAT-ATATTAATTTAA
1 TATATTAATAAATTAAATAATA-TAATTTAA
24778775 TATATT-AT-AATTAAATAATATAATTT
1 TATATTAATAAATTAAATAATATAATTT
24778801 CAATTAGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 13 0.54
29 5 0.21
30 6 0.25
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (30 bp):
TATATTAATAAATTAAATAATATAATTTAA
Found at i:24778857 original size:16 final size:16
Alignment explanation
Indices: 24778836--24778929 Score: 61
Period size: 16 Copynumber: 5.7 Consensus size: 16
24778826 TTATTAAAAA
24778836 ATTATAAATATTATAT
1 ATTATAAATATTATAT
*
24778852 ATTATACTTATATT-TAT
1 ATTATA--AATATTATAT
* * *
24778869 AATATAAAT-TAATAA
1 ATTATAAATATTATAT
24778884 ATTATATAATTAGTTATA-
1 ATTATA-AA-TA-TTATAT
24778902 ATTATAAATAATTATAT
1 ATTATAAAT-ATTATAT
24778919 -TTATTAAATAT
1 ATTA-TAAATAT
24778930 ATAAATAGAT
Statistics
Matches: 61, Mismatches: 7, Indels: 20
0.69 0.08 0.23
Matches are distributed among these distances:
14 1 0.02
15 9 0.15
16 19 0.31
17 17 0.28
18 11 0.18
19 4 0.07
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (16 bp):
ATTATAAATATTATAT
Found at i:24778916 original size:87 final size:86
Alignment explanation
Indices: 24778752--24778916 Score: 189
Period size: 87 Copynumber: 1.9 Consensus size: 86
24778742 TTGTATATTA
*
24778752 ATAAATTTAATATATTAATTTAATATATTATAATTAAATAATATAATTTCAATTAGTTATATTAA
1 ATAAATTTAATATATTAACTTAATATATTATAATTAAATAATATAATTTCAATTAGTTATATTAA
*
24778817 TAATTATTATTATTAAAAAATT
66 TAA-TATAATTATTAAAAAATT
*
24778839 ATAAATATT-ATATATTATACTT-ATAT-TTATAATATAAATTAATA-AATTATATAATTAGTTA
1 ATAAAT-TTAATATATTA-ACTTAATATATTATAAT-TAAA-TAATATAATT-T-CAATTAGTTA
24778900 TAATT-ATAA-ATAATTAT
60 T-ATTAATAATATAATTAT
24778917 ATTTATTAAA
Statistics
Matches: 68, Mismatches: 3, Indels: 14
0.80 0.04 0.16
Matches are distributed among these distances:
86 7 0.10
87 33 0.49
88 11 0.16
89 14 0.21
90 3 0.04
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (86 bp):
ATAAATTTAATATATTAACTTAATATATTATAATTAAATAATATAATTTCAATTAGTTATATTAA
TAATATAATTATTAAAAAATT
Found at i:24779275 original size:21 final size:22
Alignment explanation
Indices: 24779250--24779295 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
24779240 TTCTTAGTTA
*
24779250 TAAATCTAATTCTATTT-ATTT
1 TAAATATAATTCTATTTAATTT
* *
24779271 TAAATATTATTTTATTTAATTT
1 TAAATATAATTCTATTTAATTT
24779293 TAA
1 TAA
24779296 TAATCAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (22 bp):
TAAATATAATTCTATTTAATTT
Found at i:24779487 original size:28 final size:26
Alignment explanation
Indices: 24779447--24779507 Score: 77
Period size: 28 Copynumber: 2.3 Consensus size: 26
24779437 AAATAGATTC
* **
24779447 ATATTTTAAATTATTATTTAATAATA
1 ATATTATAAATTATTAAATAATAATA
24779473 ATTATTATAATATTATTAAATAATAATA
1 A-TATTATAA-ATTATTAAATAATAATA
24779501 ATATTAT
1 ATATTAT
24779508 TATAAAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 1 0.03
27 13 0.43
28 16 0.53
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (26 bp):
ATATTATAAATTATTAAATAATAATA
Found at i:24779508 original size:22 final size:24
Alignment explanation
Indices: 24779456--24779517 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 24
24779446 CATATTTTAA
*
24779456 ATTATTATTTAATAATAATTATTAT
1 ATTATTATTAAATAATAATTA-TAT
*
24779481 AATATTATTAAATAATAA-TA-AT
1 ATTATTATTAAATAATAATTATAT
*
24779503 ATTATTATAAAATAA
1 ATTATTATTAAATAA
24779518 CATTAAATCT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 15 0.45
24 2 0.06
25 16 0.48
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
ATTATTATTAAATAATAATTATAT
Found at i:24779516 original size:16 final size:18
Alignment explanation
Indices: 24779479--24779522 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
24779469 AATAATTATT
24779479 ATAATATTATTAAATAATA
1 ATAATATTATT-AATAATA
24779498 ATAATATTATT-ATAA-A
1 ATAATATTATTAATAATA
*
24779514 ATAACATTA
1 ATAATATTA
24779523 AATCTAAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 9 0.38
17 4 0.17
19 11 0.46
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
ATAATATTATTAATAATA
Found at i:24779815 original size:15 final size:15
Alignment explanation
Indices: 24779795--24779842 Score: 53
Period size: 15 Copynumber: 3.0 Consensus size: 15
24779785 TGATAAACTA
24779795 TATTATTATCTTAAT
1 TATTATTATCTTAAT
24779810 TATTATTAAT-TATAACAT
1 TATTATT-ATCT-T-A-AT
24779828 TATTATTATCTTAAT
1 TATTATTATCTTAAT
24779843 AATAACAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
15 10 0.36
16 4 0.14
17 4 0.14
18 10 0.36
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (15 bp):
TATTATTATCTTAAT
Found at i:24779892 original size:12 final size:12
Alignment explanation
Indices: 24779877--24779911 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
24779867 TTTTTTAGAA
24779877 TATTAATTAAAC
1 TATTAATTAAAC
24779889 TATTTAATTAAAC
1 TA-TTAATTAAAC
*
24779902 TACTAATTAA
1 TATTAATTAA
24779912 TAATAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (12 bp):
TATTAATTAAAC
Found at i:24781280 original size:21 final size:21
Alignment explanation
Indices: 24781255--24781309 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
24781245 TTATGTGGGA
* *
24781255 GGATCGATCCCTTACCTTAGG
1 GGATCGATCCCTTACATGAGG
* * *
24781276 TGATCGATCCTTTATATGAGG
1 GGATCGATCCCTTACATGAGG
24781297 GGATCGATCCCTT
1 GGATCGATCCCTT
24781310 TTTTGGAAAA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.33
Consensus pattern (21 bp):
GGATCGATCCCTTACATGAGG
Found at i:24781501 original size:21 final size:21
Alignment explanation
Indices: 24781477--24781528 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
24781467 GAAGAAGATA
**
24781477 GGATCAATCCCTTTTGC-TAGG
1 GGATCAATCCC-TTCCCTTAGG
*
24781498 GGATCGATCCCTTCCCTTAGG
1 GGATCAATCCCTTCCCTTAGG
24781519 GGATCAATCC
1 GGATCAATCC
24781529 TTTCTATCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.19, C:0.29, G:0.23, T:0.29
Consensus pattern (21 bp):
GGATCAATCCCTTCCCTTAGG
Found at i:24783167 original size:181 final size:179
Alignment explanation
Indices: 24782637--24783318 Score: 610
Period size: 181 Copynumber: 3.8 Consensus size: 179
24782627 AAATTTAAAA
* * * *
24782637 TAATATTCCAAAAATTAA-AGAGTAACAGAATTAAGAAAATGAATTT-TCTTATCGATCA-AGTT
1 TAATATTCC-AAAATTAATA-AGTAAAAGATTTAA-AAAATAAATTTGT-TTATCGAACACA-TT
* ** * * *
24782699 GAAATAGTTATGACTACCTAAACAATTATCTATTTCAAA-AATTATGACATTTTGTTTTATCATA
61 CAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAC-TTTTGTTTTGTCATA
* * * * * *
24782763 AAACAATTGGTTCTGTTCATGCAAGCGTATTTTGAATAAAATAATAT-AAATTTAT
125 AAACAATTGTTTCTGTTCATACAAGCTTATTTAGAATAAAATAAT-TCTAATTAAT
* * * * ** * * *
24782818 TAATATTCCAAAAATTAATAAATATAA-TTTTAGAAAATAAAGCTATTTTTTGAACACATTCAAA
1 TAATATTCC-AAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTATCGAACACATTCAAA
* * *
24782882 TAGTTATGACTATTTGAACAATTATCTATTTGAAATCATTATGACCATTTGTTTTGTCATAAACC
65 TAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA-CTTTTGTTTTGTCATAAAAC
*
24782947 AATTGTTTCTGTTCAAACAAGCTTATTTAGAATAAAATAATTCTAATTAAT
129 AATTGTTTCTGTTCATACAAGCTTATTTAGAATAAAATAATTCTAATTAAT
** *
24782998 TAATATTCCAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTATCGAGTGA-GTTCAAA
1 TAATATTCCAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTATCGA-ACACATTCAAA
* * * * *
24783062 TAGTTTATGATTGTTTGAATAATTATTTATTTCAAATCATTATGATCTTTTGTTTTGTTATAAAA
65 TAG-TTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA-CTTTTGTTTTGTCATAAAA
* * * *
24783127 CAATTGTTTCTATTCATACAAGTTTATTTGGAATAAAATAATACTAA-TATAT
128 CAATTGTTTCTGTTCATACAAGCTTATTTAGAATAAAATAATTCTAATTA-AT
* * ** * *
24783179 TAACATTCTAAAAATTAATAAGTTGAAGATTTAAAAAATTAATTAGTTTA-CAGAAC-CAGTTCA
1 TAATATTC-CAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTATC-GAACACA-TTCA
* * * * ** ** * **
24783242 AATAATCATGTCCATTTGAATTATTATCTATTTCAAATTGTTATGACATTTTATTTTGTTGTAAA
63 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAC-TTTTGTTTTGTCATAAA
*
24783307 ATAATTGTTTCT
127 ACAATTGTTTCT
24783319 TATCGATCAA
Statistics
Matches: 410, Mismatches: 76, Indels: 30
0.79 0.15 0.06
Matches are distributed among these distances:
179 67 0.16
180 110 0.27
181 186 0.45
182 47 0.11
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.41
Consensus pattern (179 bp):
TAATATTCCAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTATCGAACACATTCAAAT
AGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACTTTTGTTTTGTCATAAAACAA
TTGTTTCTGTTCATACAAGCTTATTTAGAATAAAATAATTCTAATTAAT
Found at i:24784027 original size:30 final size:30
Alignment explanation
Indices: 24783966--24784030 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 30
24783956 TTAAATCTAA
*
24783966 TTTATTTATATAATTAAAATTAATTAAAATT
1 TTTACTTATATAATTAAAATTAA-TAAAATT
24783997 TTTACTTAT-TAATTTAAAATTAA-AATAATT
1 TTTACTTATATAA-TTAAAATTAATAA-AATT
24784027 TTTA
1 TTTA
24784031 TAATTAAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
29 2 0.06
30 11 0.35
31 18 0.58
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (30 bp):
TTTACTTATATAATTAAAATTAATAAAATT
Found at i:24784041 original size:17 final size:18
Alignment explanation
Indices: 24784009--24784042 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24783999 TACTTATTAA
24784009 TTTAAAATTAAAATAATT
1 TTTAAAATTAAAATAATT
*
24784027 TTTATAATT-AAATAAT
1 TTTAAAATTAAAATAAT
24784043 AATATTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTTAAAATTAAAATAATT
Found at i:24784045 original size:20 final size:20
Alignment explanation
Indices: 24784020--24784068 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
24784010 TTAAAATTAA
24784020 AATAATTTTTATAATTA-AAT
1 AATAATTTTT-TAATTATAAT
*
24784040 AATAATATTTTTTATTATAAT
1 AATAAT-TTTTTAATTATAAT
24784061 ATATAATT
1 A-ATAATT
24784069 AATTAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 11 0.44
21 9 0.36
22 5 0.20
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
AATAATTTTTTAATTATAAT
Found at i:24784066 original size:22 final size:22
Alignment explanation
Indices: 24784024--24784067 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
24784014 AATTAAAATA
24784024 ATTTTTATAATTAAATAATAAT
1 ATTTTTATAATTAAATAATAAT
24784046 ATTTTT-T-ATTATAATATATAAT
1 ATTTTTATAATTA-AATA-ATAAT
24784068 TAATTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 4 0.20
21 5 0.25
22 11 0.55
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTTTTATAATTAAATAATAAT
Found at i:24784113 original size:20 final size:20
Alignment explanation
Indices: 24784055--24784115 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
24784045 TATTTTTTAT
*
24784055 TATAATATATAATTAATTAAAA
1 TATAATATA-AA-TATTTAAAA
24784077 TATAATATAAATATTTAAAA
1 TATAATATAAATATTTAAAA
* *
24784097 TTTAAATATTAAT-TTTAAA
1 TAT-AATATAAATATTTAAA
24784116 TATTAAAACT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 16 0.46
21 10 0.29
22 9 0.26
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TATAATATAAATATTTAAAA
Found at i:24784115 original size:13 final size:13
Alignment explanation
Indices: 24784097--24784121 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24784087 ATATTTAAAA
24784097 TTTAAATATTAAT
1 TTTAAATATTAAT
24784110 TTTAAATATTAA
1 TTTAAATATTAA
24784122 AACTAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTAAATATTAAT
Found at i:24784132 original size:27 final size:28
Alignment explanation
Indices: 24784072--24784150 Score: 67
Period size: 27 Copynumber: 2.9 Consensus size: 28
24784062 TATAATTAAT
* *
24784072 TAAA-ATATAA-TATAAATATTTAAAATT
1 TAAATATATAATTTTAAATA-TTAAAATC
24784099 TAAATAT-TAATTTTAAATATTAAAA-C
1 TAAATATATAATTTTAAATATTAAAATC
**
24784125 TAATATATATTGTTTTAATATATTAA
1 TAA-ATATATAATTTTAA-ATATTAA
24784151 TTTGTTTAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
26 3 0.07
27 17 0.40
28 16 0.37
29 7 0.16
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (28 bp):
TAAATATATAATTTTAAATATTAAAATC
Found at i:24784244 original size:13 final size:13
Alignment explanation
Indices: 24784228--24784252 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24784218 AATACAAATA
24784228 AATCTAATTATTT
1 AATCTAATTATTT
24784241 AATCTAATTATT
1 AATCTAATTATT
24784253 AAATAAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
AATCTAATTATTT
Found at i:24784422 original size:13 final size:13
Alignment explanation
Indices: 24784404--24784442 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
24784394 ATCCAAAATA
24784404 AAAATAATTATTT
1 AAAATAATTATTT
24784417 AAAATAATTATTT
1 AAAATAATTATTT
*
24784430 AATAATTATTATT
1 AA-AATAATTATT
24784443 AAATATAGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 15 0.62
14 9 0.38
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
AAAATAATTATTT
Found at i:24784442 original size:14 final size:14
Alignment explanation
Indices: 24784406--24784447 Score: 59
Period size: 13 Copynumber: 3.1 Consensus size: 14
24784396 CCAAAATAAA
24784406 AATAATTATTTAA-
1 AATAATTATTTAAT
24784419 AATAATTATTTAAT
1 AATAATTATTTAAT
* *
24784433 AATTATTATTAAAT
1 AATAATTATTTAAT
24784447 A
1 A
24784448 TAGTAAACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 13 0.50
14 13 0.50
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AATAATTATTTAAT
Found at i:24785496 original size:6 final size:6
Alignment explanation
Indices: 24785457--24785580 Score: 55
Period size: 6 Copynumber: 20.5 Consensus size: 6
24785447 ATATGATAAT
* * * *
24785457 TAATTA TAAGTTA TAATTA AAATTA T-TTGATA TAATTA T-ATTT TAATTT
1 TAATTA TAA-TTA TAATTA TAATTA TAAT--TA TAATTA TAATTA TAATTA
* * *
24785506 TAATT- TAATTA TTAA-TA GTAATTA -AGTTA TTTTATTA TAAGTTA TAATAA
1 TAATTA TAATTA -TAATTA -TAATTA TAATTA --TAATTA TAA-TTA TAATTA
*
24785556 TAATT- TAA-TA TTATTA TAATTA TAA
1 TAATTA TAATTA TAATTA TAATTA TAA
24785581 AATTATGAAT
Statistics
Matches: 90, Mismatches: 14, Indels: 28
0.68 0.11 0.21
Matches are distributed among these distances:
4 1 0.01
5 19 0.21
6 46 0.51
7 20 0.22
8 4 0.04
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (6 bp):
TAATTA
Found at i:24785735 original size:20 final size:19
Alignment explanation
Indices: 24785712--24785777 Score: 73
Period size: 21 Copynumber: 3.4 Consensus size: 19
24785702 AATTAAGTAT
24785712 ATAATTTATTAATATAATGA
1 ATAATTTATT-ATATAATGA
*
24785732 ATAATATATTTATAATAATGA
1 ATAATTTA-TTAT-ATAATGA
*
24785753 ATAA-TTATTAT-TAATTA
1 ATAATTTATTATATAATGA
24785770 ATAATTTA
1 ATAATTTA
24785778 ATTACTTATT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
17 9 0.22
18 3 0.08
19 4 0.10
20 11 0.28
21 13 0.32
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (19 bp):
ATAATTTATTATATAATGA
Found at i:24785751 original size:21 final size:19
Alignment explanation
Indices: 24785712--24785775 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 19
24785702 AATTAAGTAT
24785712 ATAATTTATTAATATAATGA
1 ATAA-TTATTAATATAATGA
*
24785732 ATAATATATTTATAATAATGA
1 ATAAT-TATTAAT-ATAATGA
*
24785753 ATAATTATT-AT-TAATTA
1 ATAATTATTAATATAATGA
24785770 ATAATT
1 ATAATT
24785776 TAATTACTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
17 11 0.28
19 3 0.08
20 14 0.35
21 12 0.30
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (19 bp):
ATAATTATTAATATAATGA
Found at i:24787420 original size:15 final size:16
Alignment explanation
Indices: 24787400--24787437 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
24787390 TAGTTTAAAA
24787400 TAATTATTA-AATAAT
1 TAATTATTATAATAAT
24787415 TAATTATTATAATAAT
1 TAATTATTATAATAAT
*
24787431 TATTTAT
1 TAATTAT
24787438 AATATTAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TAATTATTATAATAAT
Found at i:24787444 original size:12 final size:13
Alignment explanation
Indices: 24787393--24787452 Score: 61
Period size: 13 Copynumber: 4.5 Consensus size: 13
24787383 CATTATATAG
*
24787393 TTTAAAATAATTA
1 TTTATAATAATTA
*
24787406 TTAAATAATTAATTA
1 TT-TATAA-TAATTA
24787421 -TTATAATAATTA
1 TTTATAATAATTA
24787433 TTTATAAT-ATTA
1 TTTATAATAATTA
24787445 GTTTATAA
1 -TTTATAA
24787453 ATATAATATA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
12 10 0.25
13 20 0.50
14 4 0.10
15 6 0.15
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (13 bp):
TTTATAATAATTA
Found at i:24788180 original size:21 final size:19
Alignment explanation
Indices: 24788135--24788180 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
24788125 TAGCCTTCTC
24788135 AATTAAATATTTATATTAT
1 AATTAAATATTTATATTAT
* *
24788154 ATTTAAATATTTTTATATACT
1 AATTAAATATTTATAT-TA-T
24788175 AATTAA
1 AATTAA
24788181 TTTAAATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 14 0.64
20 2 0.09
21 6 0.27
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
AATTAAATATTTATATTAT
Found at i:24788329 original size:7 final size:7
Alignment explanation
Indices: 24788304--24788337 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
24788294 TAAATTATCT
24788304 TAATTAA
1 TAATTAA
*
24788311 TAGATAAA
1 TA-ATTAA
24788319 TAATTAA
1 TAATTAA
24788326 TAATTAA
1 TAATTAA
24788333 TAATT
1 TAATT
24788338 GGTTTGGACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (7 bp):
TAATTAA
Found at i:24789090 original size:180 final size:181
Alignment explanation
Indices: 24788763--24789223 Score: 513
Period size: 180 Copynumber: 2.6 Consensus size: 181
24788753 TAAATAGACA
* * *
24788763 AAGCCTATTCAAAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAAGTAGGAGATTT
1 AAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAACTAGGAGATTT
* * * * ***
24788828 AAAAAATAAATCTGTTTATCAAATCAGTTCAAATAGTTATGACTATTTGAATAATTATATATTTC
66 AAAAAATAAATCTGTTTACCAAACCAATTCAAATAGTTAAGACTACAAGAATAATTATATATTTC
* *
24788893 CAATCATTATAACCTTTTGTTTTGTCATAAAA-AATTATTTATCTTCATAC
131 AAATCATTATAACCTTTTGTTTTGTCATAAAACAAATATTTATCTTCATAC
* * * * * *
24788943 ATGCTTATTTGAAATAAAATAATACTAATCTAGTAATATTATG-AAATTTAATAACT-GATAGAT
1 AAGCTTATTCGAAATAAAATAATACTAATTTATTAATATT-TGAAAAATTAATAACTAG-GAGAT
* * *
24789006 TTAAAAAATAAATTTGTTTACCAAACCAATTCAAATAGTTAAGGCTACAAGAATAATTATCTATT
64 TTAAAAAATAAATCTGTTTACCAAACCAATTCAAATAGTTAAGACTACAAGAATAATTATATATT
* * * * * * *
24789071 TCAAATCGTTATGACCTTTTGTTTTGTCGTAAAACAAATGTTTTTGTTCATAT
129 TCAAATCATTATAACCTTTTGTTTTGTCATAAAACAAATATTTATCTTCATAC
* * * *
24789124 AAGTTTGTTCGAAATAAAATAATATTAATTTATTAATATTTCAAAAATTAAT-A--A-GAGATTT
1 AAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAACTAGGAGATTT
* * * * * *
24789185 AATAAATAAATCTATTTACCATACTAGTTCAATTAGTTA
66 AAAAAATAAATCTGTTTACCAAACCAATTCAAATAGTTA
24789224 TAACAATTTG
Statistics
Matches: 231, Mismatches: 45, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
177 38 0.16
179 1 0.00
180 136 0.59
181 56 0.24
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.40
Consensus pattern (181 bp):
AAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAACTAGGAGATTT
AAAAAATAAATCTGTTTACCAAACCAATTCAAATAGTTAAGACTACAAGAATAATTATATATTTC
AAATCATTATAACCTTTTGTTTTGTCATAAAACAAATATTTATCTTCATAC
Found at i:24789723 original size:34 final size:36
Alignment explanation
Indices: 24789652--24789733 Score: 89
Period size: 37 Copynumber: 2.3 Consensus size: 36
24789642 ACTTAAACTA
* * *
24789652 TAATA-TAATAATAAATAATTAAGATTAATATTGTAT
1 TAATATTAATAAGAAATAATTAAGA-TAAGATTATAT
24789688 TAATATTAATAAGAAATAATTAA-A-AAGATTATAT
1 TAATATTAATAAGAAATAATTAAGATAAGATTATAT
*
24789722 TATATTTTAATA
1 TA-ATATTAATA
24789734 TTGTATAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
34 10 0.25
35 8 0.20
36 6 0.15
37 16 0.40
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (36 bp):
TAATATTAATAAGAAATAATTAAGATAAGATTATAT
Found at i:24789873 original size:16 final size:17
Alignment explanation
Indices: 24789852--24789884 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
24789842 AGTGTAATAA
24789852 TATAA-TATTAAAATTT
1 TATAATTATTAAAATTT
*
24789868 TATAATTATTATAATTT
1 TATAATTATTAAAATTT
24789885 AAATATTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TATAATTATTAAAATTT
Found at i:24789914 original size:15 final size:16
Alignment explanation
Indices: 24789894--24789924 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
24789884 TAAATATTTT
24789894 AATTATTGATT-AATA
1 AATTATTGATTCAATA
24789909 AATTATTGATTCAATA
1 AATTATTGATTCAATA
24789925 GACTATTCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.45
Consensus pattern (16 bp):
AATTATTGATTCAATA
Found at i:24790082 original size:23 final size:21
Alignment explanation
Indices: 24790048--24790091 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 21
24790038 ATTACACAAT
*
24790048 TTGTATTATTATAAATTAATA
1 TTGTATTATTATAAATAAATA
24790069 TTGTACTTAATTATAAATAAATA
1 TTGTA-TT-ATTATAAATAAATA
24790092 ATTTATAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 5 0.25
22 2 0.10
23 13 0.65
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (21 bp):
TTGTATTATTATAAATAAATA
Found at i:24790346 original size:15 final size:15
Alignment explanation
Indices: 24790328--24790368 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
24790318 TATTAGTTAA
*
24790328 ATAATTATATTAATT
1 ATAATTATATTAAAT
24790343 ATAATTATAATTAAAT
1 ATAATTAT-ATTAAAT
24790359 AT-ATTATATT
1 ATAATTATATT
24790369 TTTAGTTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 3 0.12
15 13 0.54
16 8 0.33
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATAATTATATTAAAT
Found at i:24790876 original size:27 final size:27
Alignment explanation
Indices: 24790824--24790879 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
24790814 TTAAACAAAT
* * *
24790824 TTAATAATTATTATTATTATCAATTTA
1 TTAATAATTACTAATATTATAAATTTA
24790851 TTAATAA-TACTAATATTATAATATTTA
1 TTAATAATTACTAATATTATAA-ATTTA
24790878 TT
1 TT
24790880 TGATTAGACT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.54
Consensus pattern (27 bp):
TTAATAATTACTAATATTATAAATTTA
Found at i:24791050 original size:17 final size:17
Alignment explanation
Indices: 24791030--24791091 Score: 58
Period size: 17 Copynumber: 3.7 Consensus size: 17
24791020 TGTTAATTAT
24791030 ATTTATTAATTATAATA
1 ATTTATTAATTATAATA
*
24791047 ATTTATTAAATATAA-A
1 ATTTATTAATTATAATA
*
24791063 TTCTTATT-A-TATAATTA
1 AT-TTATTAATTATAA-TA
*
24791080 ATTTAGTAATTA
1 ATTTATTAATTA
24791092 ATTATTTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
15 5 0.14
16 7 0.19
17 22 0.61
18 2 0.06
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (17 bp):
ATTTATTAATTATAATA
Found at i:24792327 original size:63 final size:59
Alignment explanation
Indices: 24792195--24792337 Score: 143
Period size: 59 Copynumber: 2.4 Consensus size: 59
24792185 TATGACTAAG
* * *
24792195 TAATAATT-ATTTAATT-ATATATAAT-TAAATAAACTATTATTAAATTTATATATTAA
1 TAATAATTAATTTAATTGTTAAATATTATAAATAAACTATTATTAAATTTATATATTAA
* * *
24792251 TAATAGTTTATTTAATAT-TTAAATATTATAAATAAA-TATTATATTAATTTATAAATATTAA
1 TAATAATTAATTTAAT-TGTTAAATATTATAAATAAACTATTAT-TAAATTTAT--ATATTAA
24792312 TAACTGAATTAATTTAATTGTTAAAT
1 TAA-T-AATTAATTTAATTGTTAAAT
24792338 TAAATATTTT
Statistics
Matches: 71, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
56 7 0.10
57 7 0.10
58 13 0.18
59 16 0.23
61 10 0.14
62 2 0.03
63 16 0.23
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.48
Consensus pattern (59 bp):
TAATAATTAATTTAATTGTTAAATATTATAAATAAACTATTATTAAATTTATATATTAA
Found at i:24792337 original size:31 final size:28
Alignment explanation
Indices: 24792195--24792337 Score: 87
Period size: 29 Copynumber: 4.8 Consensus size: 28
24792185 TATGACTAAG
* *
24792195 TAATAA-TTATTTAATTATATATAATTAAA
1 TAATAATTTATTTAATTTTAAAT-ATT-AA
* * *
24792224 TAA-ACTATTA-TTAAATTTATATATTAA
1 TAATAAT-TTATTTAATTTTAAATATTAA
*
24792251 TAATAGTTTATTTAATATTTAAATATT-A
1 TAATAATTTATTTAAT-TTTAAATATTAA
24792279 TAAATAAATATTATATTAATTTATAAATATTAA
1 T-AAT-AAT-TTAT-TTAATTT-TAAATATTAA
*
24792312 TAACTGAATTAATTTAATTGTTAAAT
1 TAA-T-AATTTATTTAATT-TTAAAT
24792338 TAAATATTTT
Statistics
Matches: 92, Mismatches: 9, Indels: 24
0.74 0.07 0.19
Matches are distributed among these distances:
27 8 0.09
28 12 0.13
29 25 0.27
30 5 0.05
31 17 0.18
32 19 0.21
33 6 0.07
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.48
Consensus pattern (28 bp):
TAATAATTTATTTAATTTTAAATATTAA
Found at i:24792550 original size:13 final size:13
Alignment explanation
Indices: 24792534--24792558 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24792524 TATTAAAATA
24792534 TTAAAATAAATTT
1 TTAAAATAAATTT
24792547 TTAAAATAAATT
1 TTAAAATAAATT
24792559 ATAATATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAAATAAATTT
Found at i:24793715 original size:21 final size:21
Alignment explanation
Indices: 24793691--24793738 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
24793681 ATTAATGATT
*
24793691 ATAATCTATTCATA-TTTAACA
1 ATAATATATT-ATATTTTAACA
*
24793712 ATAAATATATTATATTTTAATA
1 AT-AATATATTATATTTTAACA
24793734 ATAAT
1 ATAAT
24793739 TATAATAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (21 bp):
ATAATATATTATATTTTAACA
Found at i:24793722 original size:22 final size:22
Alignment explanation
Indices: 24793697--24793742 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
24793687 GATTATAATC
24793697 TATTCATA-TTTAACAATAAATA
1 TATT-ATATTTTAACAATAAATA
* *
24793719 TATTATATTTTAATAATAATTA
1 TATTATATTTTAACAATAAATA
24793741 TA
1 TA
24793743 ATAAATTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (22 bp):
TATTATATTTTAACAATAAATA
Found at i:24793760 original size:18 final size:19
Alignment explanation
Indices: 24793737--24793780 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
24793727 TTTAATAATA
* *
24793737 ATTATAATAAATT-CTATT
1 ATTATAATAAATTAATACT
24793755 ATTAT-ATAAATTAATACT
1 ATTATAATAAATTAATACT
24793773 ATTATAAT
1 ATTATAAT
24793781 TATAGTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 7 0.32
18 13 0.59
19 2 0.09
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (19 bp):
ATTATAATAAATTAATACT
Found at i:24794126 original size:45 final size:46
Alignment explanation
Indices: 24794076--24794206 Score: 116
Period size: 45 Copynumber: 2.9 Consensus size: 46
24794066 TTTAACTATT
24794076 ATAATCTTATTATAT-TAATTATATAATATAATTTATTAAAATATA
1 ATAATCTTATTATATATAATTATATAATATAATTTATTAAAATATA
** * *
24794121 ATAATCTGGTTAT-TATAATTATTTAATA-AAGTTATAATTAAAATGTA
1 ATAATCTTATTATATATAATTATATAATATAA-TT-T-ATTAAAATATA
* *
24794168 A-AA--TTAGTTATATATATTTATAT-ATATAA-TAATTAAAAT
1 ATAATCTTA-TTATATATAATTATATAATATAATTTATTAAAAT
24794207 TATCTAGTTA
Statistics
Matches: 70, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
42 8 0.11
44 5 0.07
45 32 0.46
46 14 0.20
47 11 0.16
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.47
Consensus pattern (46 bp):
ATAATCTTATTATATATAATTATATAATATAATTTATTAAAATATA
Found at i:24795197 original size:162 final size:163
Alignment explanation
Indices: 24795003--24795313 Score: 360
Period size: 162 Copynumber: 1.9 Consensus size: 163
24794993 TAACTAATTC
*
24795003 AAAAGAATAAATCAATTTACCCAATCAGTTCAAATAATTAT-AGCCGTTTAAACAACTATCTATT
1 AAAAGAATAAATCAATTTACCCAATCAGTTCAAATAATTATGA-CCATTTAAACAACTATCTATT
* ** * ** * * *
24795067 TCAAATTGTTATTACCTTTTGTTTTGTCATAAAATAATTATTTTTCA-ACATACAAGCTTATTTG
65 TCAAATTATTACAACCTTTTGTTCTACCATAAAACAATTATTTCT-ATACATACAAGCTTATTCG
*
24795131 AAATAAAATAATACCAATTTATTAATAAGACATTT
129 AAATAAAATAACACCAATTTATTAATAAGACATTT
*** * ** * * *
24795166 AAAA-AATAAATCAATTTATTGAA-CTAGTTCAAATAGTTATGATTATTTGAACAATTTTCTATT
1 AAAAGAATAAATCAATTTACCCAATC-AGTTCAAATAATTATGACCATTTAAACAACTATCTATT
* *
24795229 TCAAATTATTACAACCTTTTGTTCTACCATAAAACAATTGTTTCTATTCATACAAGCTTATTCGA
65 TCAAATTATTACAACCTTTTGTTCTACCATAAAACAATTATTTCTATACATACAAGCTTATTCGA
*
24795294 AATAAAATAACACTAATTTA
130 AATAAAATAACACCAATTTA
24795314 GCAATACTCT
Statistics
Matches: 122, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
161 2 0.02
162 115 0.94
163 5 0.04
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.39
Consensus pattern (163 bp):
AAAAGAATAAATCAATTTACCCAATCAGTTCAAATAATTATGACCATTTAAACAACTATCTATTT
CAAATTATTACAACCTTTTGTTCTACCATAAAACAATTATTTCTATACATACAAGCTTATTCGAA
ATAAAATAACACCAATTTATTAATAAGACATTT
Found at i:24795737 original size:18 final size:17
Alignment explanation
Indices: 24795714--24795766 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 17
24795704 TTAAATTTAA
*
24795714 ATTTATATTAATAAATAT
1 ATTTATATGAAT-AATAT
24795732 ATTTATATGAATAATAT
1 ATTTATATGAATAATAT
*
24795749 AATTATTATAGAATAATA
1 ATTTA-TAT-GAATAATA
24795767 GTCAAATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
17 9 0.29
18 14 0.45
19 8 0.26
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (17 bp):
ATTTATATGAATAATAT
Found at i:24795899 original size:31 final size:31
Alignment explanation
Indices: 24795863--24795924 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 31
24795853 ATAATTAAAA
*
24795863 TTATTACTATTAGTT-ATATT-TTGACTATTAT
1 TTATTACTA-TAATTAATATTATT-ACTATTAT
*
24795894 TTATTATTATAATTAATATTATTACTATTAT
1 TTATTACTATAATTAATATTATTACTATTAT
24795925 AATAATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 4 0.15
31 21 0.78
32 2 0.07
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (31 bp):
TTATTACTATAATTAATATTATTACTATTAT
Found at i:24795924 original size:21 final size:20
Alignment explanation
Indices: 24795888--24795945 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
24795878 ATATTTTGAC
*
24795888 TATTATTTATTATTATAATTAA
1 TATTA-TTAATATTATAA-TAA
*
24795910 TATTATTACTATTATAATAA
1 TATTATTAATATTATAATAA
*
24795930 TAATTAATAATATTAT
1 T-ATTATTAATATTAT
24795946 TATTTAAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.12
21 23 0.72
22 5 0.16
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (20 bp):
TATTATTAATATTATAATAA
Found at i:24797482 original size:19 final size:21
Alignment explanation
Indices: 24797420--24797486 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
24797410 TTATAGTAAT
* *
24797420 ATAA-ATAAAATATAACAATT
1 ATAATATATAATATAACAATA
*
24797440 ATAATATATAATATAATAATTA
1 ATAATATATAATATAACAA-TA
*
24797462 ATAATAT-TATTATAA-AATA
1 ATAATATATAATATAACAATA
24797481 ATAATA
1 ATAATA
24797487 AATTATTATC
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
19 8 0.20
20 6 0.15
21 19 0.46
22 8 0.20
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.37
Consensus pattern (21 bp):
ATAATATATAATATAACAATA
Found at i:24797551 original size:22 final size:21
Alignment explanation
Indices: 24797501--24797554 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
24797491 ATTATCTATT
*
24797501 TATTTA-ATTATGTTAGTTTA
1 TATTTATATTATGTTAATTTA
* *
24797521 TAATATATATTATTTTAATTTA
1 T-ATTTATATTATGTTAATTTA
24797543 CTATTTATATTA
1 -TATTTATATTA
24797555 ATAATTTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 1 0.04
21 4 0.15
22 21 0.78
23 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (21 bp):
TATTTATATTATGTTAATTTA
Found at i:24797612 original size:24 final size:23
Alignment explanation
Indices: 24797565--24797608 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
24797555 ATAATTTTTA
24797565 ATATTAAAACTAATATTATAAGT
1 ATATTAAAACTAATATTATAAGT
*
24797588 ATATTAATAATTAATA-TATAA
1 ATATTAA-AACTAATATTATAA
24797609 AGTAAACAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (23 bp):
ATATTAAAACTAATATTATAAGT
Found at i:24797720 original size:24 final size:21
Alignment explanation
Indices: 24797665--24797733 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
24797655 ACTAAATAAC
*
24797665 TATT-AATATTATTAATAAAT
1 TATTCAATATAATTAATAAAT
24797685 TATTC-ATAATAATTAATATTAAT
1 TATTCAAT-ATAATTAATA--AAT
24797708 TATATCAATATAAGTT-ATAAAT
1 TAT-TCAATATAA-TTAATAAAT
24797730 TATT
1 TATT
24797734 ACTATTAATT
Statistics
Matches: 41, Mismatches: 1, Indels: 13
0.75 0.02 0.24
Matches are distributed among these distances:
20 6 0.15
21 10 0.24
22 6 0.15
23 6 0.15
24 9 0.22
25 4 0.10
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (21 bp):
TATTCAATATAATTAATAAAT
Found at i:24797837 original size:8 final size:8
Alignment explanation
Indices: 24797783--24797874 Score: 50
Period size: 8 Copynumber: 11.1 Consensus size: 8
24797773 TATATATTTC
24797783 AATA-TAT
1 AATATTAT
24797790 AA-ATTATT
1 AATATTA-T
24797798 AA-ATTAT
1 AATATTAT
24797805 AACTATTAAT
1 AA-TATT-AT
24797815 AATATTAT
1 AATATTAT
24797823 -ATAATTAT
1 AAT-ATTAT
24797831 AATATTAATGT
1 AATATT-A--T
*
24797842 AATATTAC
1 AATATTAT
*
24797850 AATATGA-
1 AATATTAT
*
24797857 AATATAAT
1 AATATTAT
24797865 AATAATTAT
1 AAT-ATTAT
24797874 A
1 A
24797875 TTAAAATTAA
Statistics
Matches: 69, Mismatches: 4, Indels: 22
0.73 0.04 0.23
Matches are distributed among these distances:
6 1 0.01
7 15 0.22
8 26 0.38
9 15 0.22
10 5 0.07
11 7 0.10
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (8 bp):
AATATTAT
Done.