Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 252 of 402
Found at i:24797885 original size:15 final size:16
Alignment explanation
Indices: 24797867--24797915 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
24797857 AATATAATAA
24797867 TAATT-ATATTAAAAT
1 TAATTAATATTAAAAT
*
24797882 TAATTAAATATT-AATT
1 TAATT-AATATTAAAAT
*
24797898 TTATTAATATTAAAAT
1 TAATTAATATTAAAAT
24797914 TA
1 TA
24797916 TATAAATTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
15 11 0.41
16 11 0.41
17 5 0.19
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TAATTAATATTAAAAT
Found at i:24797916 original size:15 final size:16
Alignment explanation
Indices: 24797872--24797927 Score: 60
Period size: 15 Copynumber: 3.4 Consensus size: 16
24797862 AATAATAATT
24797872 ATATTAAAATTAATTAA
1 ATATTAAAATT-ATTAA
**
24797889 ATATTAATTTTATT-A
1 ATATTAAAATTATTAA
24797904 ATATTAAAATTATATAA
1 ATATTAAAATTAT-TAA
24797921 ATTATTA
1 A-TATTA
24797928 GAGTAAATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
15 12 0.38
16 4 0.12
17 11 0.34
18 5 0.16
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATTAAAATTATTAA
Found at i:24798163 original size:22 final size:22
Alignment explanation
Indices: 24798116--24798172 Score: 55
Period size: 22 Copynumber: 2.5 Consensus size: 22
24798106 AAAATAAAAT
*
24798116 AAATAT-TTTATTATAATATTA
1 AAATATATTTATTATAATAGTA
*
24798137 TAATATATTTATTATAAT-GTA
1 AAATATATTTATTATAATAGTA
24798158 CAAATAAATATTTAT
1 -AAAT--ATATTTAT
24798173 ACTTATGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 7 0.24
22 14 0.48
24 8 0.28
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
AAATATATTTATTATAATAGTA
Found at i:24798444 original size:12 final size:11
Alignment explanation
Indices: 24798405--24798442 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 11
24798395 CACTAAATAG
24798405 TTAATAATAA-
1 TTAATAATAAT
*
24798415 TTAATAATAGT
1 TTAATAATAAT
24798426 TTAATTAATAAT
1 TTAA-TAATAAT
24798438 TTAAT
1 TTAAT
24798443 TACAAATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 9 0.38
11 5 0.21
12 10 0.42
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (11 bp):
TTAATAATAAT
Found at i:24798734 original size:17 final size:16
Alignment explanation
Indices: 24798714--24798755 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
24798704 TACTTTTATT
24798714 ATTATAATTTATAATAA
1 ATTATAATTTATAAT-A
* *
24798731 ATTATTATATATAATA
1 ATTATAATTTATAATA
24798747 ATTATAATT
1 ATTATAATT
24798756 AATTATTTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTATAATTTATAATA
Found at i:24798747 original size:20 final size:20
Alignment explanation
Indices: 24798711--24798748 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
24798701 TTTTACTTTT
*
24798711 ATTATTATAATTTATAATAA
1 ATTATTATAATTAATAATAA
24798731 ATTATTAT-ATATAATAAT
1 ATTATTATAAT-TAATAAT
24798749 TATAATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.12
20 14 0.88
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTATTATAATTAATAATAA
Found at i:24798931 original size:30 final size:30
Alignment explanation
Indices: 24798897--24798958 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
24798887 TATACAAATG
24798897 ATAATCTATTCAATAAATAATTAT-ATTAAT
1 ATAATCTATTCAAT-AATAATTATAATTAAT
* * * *
24798927 ATAATTTATTTAATTATTATTATAATTAAT
1 ATAATCTATTCAATAATAATTATAATTAAT
24798957 AT
1 AT
24798959 TATTAATTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (30 bp):
ATAATCTATTCAATAATAATTATAATTAAT
Found at i:24798963 original size:21 final size:21
Alignment explanation
Indices: 24798916--24798968 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
24798906 TCAATAAATA
* *
24798916 ATTA-TATTAATATAATTTAT
1 ATTATTATTATTATAATTAAT
24798936 -TTAATTATTATTATAATTAAT
1 ATT-ATTATTATTATAATTAAT
24798957 ATTATTAATTAT
1 ATTATT-ATTAT
24798969 CTTAGATTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
19 2 0.07
20 1 0.04
21 17 0.63
22 7 0.26
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTATTATTATTATAATTAAT
Found at i:24799202 original size:15 final size:14
Alignment explanation
Indices: 24799182--24799224 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
24799172 TAATTACTAT
*
24799182 TAATATTTAGTTCAA
1 TAATATTTA-TTAAA
24799197 TAATATTTATTAAA
1 TAATATTTATTAAA
*
24799211 TAATTAATTATTAA
1 TAA-TATTTATTAA
24799225 TTATAAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 7 0.28
15 18 0.72
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (14 bp):
TAATATTTATTAAA
Found at i:24799233 original size:21 final size:21
Alignment explanation
Indices: 24799207--24799251 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
24799197 TAATATTTAT
*
24799207 TAAATAATTAA-TTATTAATTA
1 TAAATAATTAACAT-TTAATTA
*
24799228 TAAATATTTAACATTTAATTA
1 TAAATAATTAACATTTAATTA
24799249 TAA
1 TAA
24799252 CTACTTATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
TAAATAATTAACATTTAATTA
Found at i:24800428 original size:19 final size:18
Alignment explanation
Indices: 24800402--24800450 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
24800392 CAAATTATAA
*
24800402 AAATTATTAATAATCATT
1 AAATTATTAATAATAATT
* *
24800420 AATATTATTATTAGTAATT
1 AA-ATTATTAATAATAATT
24800439 AAATTA-TAATAA
1 AAATTATTAATAA
24800451 ATATATTATA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 4 0.16
18 6 0.24
19 15 0.60
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
AAATTATTAATAATAATT
Found at i:24800892 original size:27 final size:28
Alignment explanation
Indices: 24800848--24800907 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
24800838 TATGACTGAA
*
24800848 AAAGTCATATTATAAATAATTATT-AT-T
1 AAAGTCATATGATAAATAA-TATTAATAT
24800875 AAAGTCATAATGAT-AATAATATTAATAT
1 AAAGTCAT-ATGATAAATAATATTAATAT
24800903 AAAGT
1 AAAGT
24800908 ATTTTATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 4 0.14
27 15 0.52
28 10 0.34
ACGTcount: A:0.52, C:0.03, G:0.07, T:0.38
Consensus pattern (28 bp):
AAAGTCATATGATAAATAATATTAATAT
Found at i:24801569 original size:181 final size:180
Alignment explanation
Indices: 24801156--24801772 Score: 724
Period size: 181 Copynumber: 3.4 Consensus size: 180
24801146 AACATGTTTG
* * * *
24801156 AATAGTTCTGACTATTTGAATAATTATTTATTTCAAATAGTTATGACCTTTTGTTTTGTGATAAA
1 AATAGTTATAACTATTTGAATAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCATAAA
* * * * *
24801221 TCAATTGTTTTTGTCCATACAAGTTTATTCCAAATAAAATAAT--TAAATTTATTAATATTTCAA
66 ACAATTGTTTCTGTCTATACAAGTTTATTCAAAATAAAATAATACT-AATTTATTAATATTCCAA
* ** *
24801284 AATTTAATAAGTAAAA-ATTTAAAAAATAAATTTGTTTTTTGAACATGTTCA
130 AA-TTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACTGAACAAGTTCA
* * * *
24801335 AATAGATT-TGACTATTTGAATAATTATCTATTTTAAATAGTTATGACCTTTTGTTTTGTGATGA
1 AATAG-TTATAACTATTTGAATAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCATAA
* * * *
24801399 ATCAATTGTTTCTGTCTATATAAGCTTATTCAAAATAAAATAATACTAATTTAATAATATTCCAA
65 AACAATTGTTTCTGTCTATACAAGTTTATTCAAAATAAAATAATACTAATTTATTAATATTCCAA
** *
24801464 CAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACTGAGTAAGCTCA
130 -AATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACTGAACAAGTTCA
* * * * *
24801516 AATAGTTATAACTGTTTGAATAATTTTTTATTTCTAATAGTTATGATCTTTTGTTTTGTCATAAA
1 AATAGTTATAACTATTTGAATAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCATAAA
* * *
24801581 ACAATTGTTTCTAT-TCATACAAGTTTATTCAAAATAAAATAATACTACTTTTATTAATATTTTG
66 ACAATTGTTTCTGTCT-ATACAAGTTTATTCAAAATAAAATAATACTA-ATTTATTAATA--TTC
** ** * *
24801645 C-AAATTAATGGGTAGGAGATTTAAAAAATAAATCTGTTTACCGAACAAGTTTA
127 CAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACTGAACAAGTTCA
* * * * * *
24801698 AATAGTCATATCCATTAGAATAATTATCTATTTCAAATTGTTATGACCTTTTCTTTTGTCATAAA
1 AATAGTTATAACTATTTGAATAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCATAAA
24801763 ACAATTGTTT
66 ACAATTGTTT
24801773 TATAATACTT
Statistics
Matches: 375, Mismatches: 53, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
179 97 0.26
180 34 0.09
181 125 0.33
182 115 0.31
183 1 0.00
184 3 0.01
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.43
Consensus pattern (180 bp):
AATAGTTATAACTATTTGAATAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCATAAA
ACAATTGTTTCTGTCTATACAAGTTTATTCAAAATAAAATAATACTAATTTATTAATATTCCAAA
ATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTACTGAACAAGTTCA
Found at i:24802506 original size:22 final size:22
Alignment explanation
Indices: 24802480--24802533 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 22
24802470 TATTCAATAA
*
24802480 TTAATTATT-ATATTTAATTATC
1 TTAATTATTAATATTAAATT-TC
24802502 TTAA-TATTAATATTAAATTTC
1 TTAATTATTAATATTAAATTTC
24802523 TACTAATTATT
1 T--TAATTATT
24802534 TAAAGATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 7 0.26
22 13 0.48
23 3 0.11
24 4 0.15
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTATTAATATTAAATTTC
Found at i:24803108 original size:13 final size:13
Alignment explanation
Indices: 24803087--24803171 Score: 61
Period size: 13 Copynumber: 6.5 Consensus size: 13
24803077 ATAGTATTAA
*
24803087 ATATTTAATAATT
1 ATATATAATAATT
24803100 ATATATAATAATT
1 ATATATAATAATT
*
24803113 GT-TATAAT-ATT
1 ATATATAATAATT
* *
24803124 CTATAATAATTATT
1 ATAT-ATAATAATT
*
24803138 ATATATAAATATAGT
1 ATATAT-AATA-ATT
24803153 AT-TATAAT-ATT
1 ATATATAATAATT
24803164 ATTATATA
1 A-TATATA
24803172 CAAATATTAT
Statistics
Matches: 58, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
11 7 0.12
12 8 0.14
13 27 0.47
14 12 0.21
15 4 0.07
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (13 bp):
ATATATAATAATT
Found at i:24803137 original size:14 final size:13
Alignment explanation
Indices: 24803116--24803195 Score: 51
Period size: 13 Copynumber: 6.0 Consensus size: 13
24803106 AATAATTGTT
*
24803116 ATAATATTCTATA
1 ATAATATTATATA
24803129 ATAATTATTATAT-
1 ATAA-TATTATATA
24803142 ATAAATATAGTATTATA
1 AT-AATAT--TA-TATA
*
24803159 ATATTATTATATA
1 ATAATATTATATA
*
24803172 CA-AATATTATTTA
1 -ATAATATTATATA
24803185 AT-AT-TTATATA
1 ATAATATTATATA
24803196 TTTTAGAAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 18
0.70 0.06 0.23
Matches are distributed among these distances:
11 6 0.11
12 3 0.06
13 22 0.41
14 12 0.22
15 2 0.04
16 7 0.13
17 2 0.04
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (13 bp):
ATAATATTATATA
Found at i:24803150 original size:22 final size:22
Alignment explanation
Indices: 24803094--24803162 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 22
24803084 TAAATATTTA
*
24803094 ATAAT-TATATATAATAATTGTT
1 ATAATATA-ATATAATAATTATT
**
24803116 ATAATATTCTATAATAATTATT
1 ATAATATAATATAATAATTATT
*
24803138 AT-ATATAA-AT-AT-AGTATT
1 ATAATATAATATAATAATTATT
24803156 ATAATAT
1 ATAATAT
24803163 TATTATATAC
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
18 7 0.18
19 6 0.15
20 2 0.05
21 4 0.10
22 19 0.49
23 1 0.03
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (22 bp):
ATAATATAATATAATAATTATT
Found at i:24803158 original size:8 final size:8
Alignment explanation
Indices: 24803038--24803170 Score: 55
Period size: 8 Copynumber: 16.4 Consensus size: 8
24803028 TTTTATTAAT
24803038 TATTAT-A
1 TATTATAA
24803045 TAGTTATAA
1 TA-TTATAA
*
24803054 TATTAAACA
1 TATTATA-A
*
24803063 TGTTAATAA
1 TATT-ATAA
* *
24803072 CAATTATAG
1 -TATTATAA
24803081 TATTA-AA
1 TATTATAA
24803088 TATT-TAA
1 TATTATAA
24803095 TAATTAT-A
1 T-ATTATAA
*
24803103 TATAATAA
1 TATTATAA
*
24803111 TTGTTATAA
1 -TATTATAA
24803120 TATTCTATAA
1 TA-T-TATAA
*
24803130 TAATTATTA
1 T-ATTATAA
24803139 TA-TATAA
1 TATTATAA
*
24803146 -A-TATAG
1 TATTATAA
24803152 TATTATAA
1 TATTATAA
*
24803160 TATTATTA
1 TATTATAA
24803168 TAT
1 TAT
24803171 ACAAATATTA
Statistics
Matches: 94, Mismatches: 17, Indels: 29
0.67 0.12 0.21
Matches are distributed among these distances:
6 5 0.05
7 19 0.20
8 34 0.36
9 24 0.26
10 11 0.12
11 1 0.01
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (8 bp):
TATTATAA
Found at i:24803176 original size:29 final size:27
Alignment explanation
Indices: 24803125--24803189 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 27
24803115 TATAATATTC
*
24803125 TATAATAATTATTATATATAAATATAGTAT
1 TATAAT-ATTATTATATACAAATAT--TAT
24803155 TATAATATTATTATATACAAATATTAT
1 TATAATATTATTATATACAAATATTAT
24803182 T-TAATATT
1 TATAATATT
24803190 TATATATTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
26 7 0.21
27 4 0.12
29 17 0.50
30 6 0.18
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.49
Consensus pattern (27 bp):
TATAATATTATTATATACAAATATTAT
Found at i:24803177 original size:16 final size:15
Alignment explanation
Indices: 24803132--24803182 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
24803122 TTCTATAATA
24803132 ATTATTATATATAAAT
1 ATTATTATATA-AAAT
* *
24803148 A-TAGTAT-TATAAT
1 ATTATTATATAAAAT
24803161 ATTATTATATACAAAT
1 ATTATTATATA-AAAT
24803177 ATTATT
1 ATTATT
24803183 TAATATTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
13 4 0.14
14 7 0.25
15 7 0.25
16 10 0.36
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (15 bp):
ATTATTATATAAAAT
Found at i:24805166 original size:21 final size:20
Alignment explanation
Indices: 24805128--24805166 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
24805118 TAGATTAATT
**
24805128 AATAAAATTAATCTATTAAG
1 AATAAAATTAATAAATTAAG
24805148 AATAATAATTAATAAATTA
1 AATAA-AATTAATAAATTA
24805167 TTAATAGATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (20 bp):
AATAAAATTAATAAATTAAG
Found at i:24805172 original size:21 final size:20
Alignment explanation
Indices: 24805125--24805185 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
24805115 AATTAGATTA
**
24805125 ATTAATAAAATTAATCTATT
1 ATTAATAAAATTAATAAATT
**
24805145 AAGAATAATAATTAATAAATT
1 ATTAATAA-AATTAATAAATT
*
24805166 ATTAAT-AGATTAGATAAATT
1 ATTAATAAAATTA-ATAAATT
24805186 GTATAACATT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
19 4 0.12
20 14 0.44
21 14 0.44
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (20 bp):
ATTAATAAAATTAATAAATT
Found at i:24805477 original size:13 final size:13
Alignment explanation
Indices: 24805461--24805485 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24805451 ATTCTTTAAT
24805461 AATAATATTTATC
1 AATAATATTTATC
24805474 AATAATATTTAT
1 AATAATATTTAT
24805486 TTTAATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
AATAATATTTATC
Found at i:24806037 original size:24 final size:22
Alignment explanation
Indices: 24806009--24806052 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
24805999 TATAATACCA
24806009 TTTTATTATAACAAATTATATAAT
1 TTTTATT-TAA-AAATTATATAAT
*
24806033 TTTTATTTAATAATTATATA
1 TTTTATTTAAAAATTATATA
24806053 TTAAATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 3 0.16
24 7 0.37
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
TTTTATTTAAAAATTATATAAT
Found at i:24806800 original size:28 final size:28
Alignment explanation
Indices: 24806699--24806801 Score: 79
Period size: 28 Copynumber: 3.6 Consensus size: 28
24806689 TATATACACT
* *
24806699 TATTAAATATTAATTATTTTAATA-TA-A
1 TATT-AATAATAATTATATTAATATTATA
*
24806726 TAATAATTACATAATT-TATTAAT-TTAAGTTA
1 TATTAA-TA-ATAATTATATTAATATT-A--TA
* *
24806757 TATTAATAACATTTATATTAATATTATA
1 TATTAATAATAATTATATTAATATTATA
24806785 TATTAATAATAATTATA
1 TATTAATAATAATTATA
24806802 AATAATGTTA
Statistics
Matches: 59, Mismatches: 8, Indels: 17
0.70 0.10 0.20
Matches are distributed among these distances:
26 2 0.03
27 12 0.20
28 23 0.39
29 4 0.07
30 10 0.17
31 8 0.14
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.50
Consensus pattern (28 bp):
TATTAATAATAATTATATTAATATTATA
Found at i:24806816 original size:28 final size:28
Alignment explanation
Indices: 24806753--24806836 Score: 75
Period size: 28 Copynumber: 3.0 Consensus size: 28
24806743 ATTAATTTAA
* * *
24806753 GTTA-TATTAATAACATTTAT-ATTAAT
1 GTTATTATTAATAATAATTATAAATAAT
*
24806779 ATTATATATTAATAATAATTATAAATAAT
1 GTTAT-TATTAATAATAATTATAAATAAT
*
24806808 GTTATTATTTA-AATGAATTATAATATAAT
1 GTTATTATTAATAAT-AATTATAA-ATAAT
24806837 CATAATTAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
26 3 0.06
27 3 0.06
28 27 0.57
29 14 0.30
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.48
Consensus pattern (28 bp):
GTTATTATTAATAATAATTATAAATAAT
Found at i:24806918 original size:19 final size:19
Alignment explanation
Indices: 24806896--24806932 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
24806886 ATAATTTTTA
*
24806896 AATTAATAATTATAATTAT
1 AATTAATAAGTATAATTAT
24806915 AATTAATAAGTATAATTA
1 AATTAATAAGTATAATTA
24806933 ATAAATACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (19 bp):
AATTAATAAGTATAATTAT
Found at i:24806923 original size:13 final size:13
Alignment explanation
Indices: 24806896--24806936 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
24806886 ATAATTTTTA
24806896 AATTAATAATT-AT
1 AATT-ATAATTAAT
24806909 AATTATAATTAAT
1 AATTATAATTAAT
*
24806922 AAGTATAATTAAT
1 AATTATAATTAAT
24806935 AA
1 AA
24806937 ATACAATTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 6 0.23
13 20 0.77
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (13 bp):
AATTATAATTAAT
Found at i:24807021 original size:26 final size:24
Alignment explanation
Indices: 24806992--24807049 Score: 62
Period size: 26 Copynumber: 2.3 Consensus size: 24
24806982 TTTAAACCTA
*
24806992 ATTATAAAATATTTTATATAGTTATT
1 ATTATAAAATATTTAATATA-TT-TT
* *
24807018 ATTATTAATTATTTAATATATTTT
1 ATTATAAAATATTTAATATATTTT
24807042 AGTTATAA
1 A-TTATAA
24807050 TTATTAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 3 0.11
25 7 0.26
26 17 0.63
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55
Consensus pattern (24 bp):
ATTATAAAATATTTAATATATTTT
Found at i:24807029 original size:33 final size:31
Alignment explanation
Indices: 24806990--24807056 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
24806980 TATTTAAACC
* *
24806990 TAATTATAAAATATTTTATATAGTTATTATTAT
1 TAATTATAAAATATATT-T-TAGTTATAATTAT
**
24807023 TAATTATTTAATATATTTTAGTTATAATTAT
1 TAATTATAAAATATATTTTAGTTATAATTAT
24807054 TAA
1 TAA
24807057 AATAATTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 15 0.50
32 1 0.03
33 14 0.47
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (31 bp):
TAATTATAAAATATATTTTAGTTATAATTAT
Found at i:24807063 original size:12 final size:12
Alignment explanation
Indices: 24807046--24807077 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
24807036 TATTTTAGTT
24807046 ATAATTATTAAA
1 ATAATTATTAAA
*
24807058 ATAATTAATAAA
1 ATAATTATTAAA
24807070 ATAATTAT
1 ATAATTAT
24807078 AATTTATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
ATAATTATTAAA
Found at i:24807116 original size:22 final size:20
Alignment explanation
Indices: 24807065--24807119 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 20
24807055 AAAATAATTA
*
24807065 ATAAAATAATTATAATTTAT
1 ATAAAATAATTATAATTGAT
*
24807085 ATAACTAATACTTATAATATGATT
1 ATAA--AATAATTATAAT-TGA-T
24807109 ATAAAATAATT
1 ATAAAATAATT
24807120 TTTACTATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
20 4 0.14
22 17 0.61
23 2 0.07
24 5 0.18
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (20 bp):
ATAAAATAATTATAATTGAT
Found at i:24807449 original size:18 final size:18
Alignment explanation
Indices: 24807426--24807464 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
24807416 TTATTATCAA
24807426 ATTTAT-TTAAGATTAATT
1 ATTTATATTAA-ATTAATT
*
24807444 ATTTATATTTAATTAATT
1 ATTTATATTAAATTAATT
24807462 ATT
1 ATT
24807465 ATTATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (18 bp):
ATTTATATTAAATTAATT
Found at i:24807560 original size:12 final size:12
Alignment explanation
Indices: 24807545--24807614 Score: 60
Period size: 12 Copynumber: 6.2 Consensus size: 12
24807535 ATTTAATAAA
24807545 TATAATAATTAT
1 TATAATAATTAT
24807557 TATAAT-ATT-T
1 TATAATAATTAT
*
24807567 TA-AATAAATAT
1 TATAATAATTAT
*
24807578 AATAATAATTAT
1 TATAATAATTAT
*
24807590 T-TAAATTATTAT
1 TAT-AATAATTAT
*
24807602 TATTA-AATTAT
1 TATAATAATTAT
24807613 TA
1 TA
24807615 AAATTTAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
9 3 0.07
10 5 0.11
11 13 0.28
12 24 0.52
13 1 0.02
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TATAATAATTAT
Found at i:24807575 original size:30 final size:28
Alignment explanation
Indices: 24807514--24807589 Score: 100
Period size: 30 Copynumber: 2.7 Consensus size: 28
24807504 TTAACAAAAT
* *
24807514 TAAA-ATATTAATAATTTTAATATTTAA
1 TAAATATAATAATAATTATAATATTTAA
*
24807541 TAAATATAATAATTATTATAATATTTTAAA
1 TAAATATAATAATAATTATAATA-TTT-AA
24807571 TAAATATAATAATAATTAT
1 TAAATATAATAATAATTAT
24807590 TTAAATTATT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 4 0.10
28 15 0.36
29 3 0.07
30 20 0.48
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (28 bp):
TAAATATAATAATAATTATAATATTTAA
Found at i:24807609 original size:14 final size:15
Alignment explanation
Indices: 24807585--24807614 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
24807575 TATAATAATA
24807585 ATTATTTAAATTATT
1 ATTATTTAAATTATT
24807600 ATTA-TTAAATTATT
1 ATTATTTAAATTATT
24807614 A
1 A
24807615 AAATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
ATTATTTAAATTATT
Found at i:24807749 original size:26 final size:25
Alignment explanation
Indices: 24807699--24807751 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
24807689 TTTAAATTTT
*
24807699 ATTATATTAATAAATATCATTATTA
1 ATTATATTAATAAAAATCATTATTA
24807724 ATTATTATTAATAAAAAT-ATTAATTA
1 ATTA-TATTAATAAAAATCATT-ATTA
24807750 AT
1 AT
24807752 AAATTAGTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (25 bp):
ATTATATTAATAAAAATCATTATTA
Found at i:24809240 original size:16 final size:16
Alignment explanation
Indices: 24809216--24809262 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
24809206 CCTTAATAAT
*
24809216 TTAAAAAATTATTTAG
1 TTAATAAATTATTTAG
*
24809232 TTAATAAATAATTTAG
1 TTAATAAATTATTTAG
24809248 -TAATTAAATTATTTA
1 TTAA-TAAATTATTTA
24809263 AAATTATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
15 3 0.11
16 24 0.89
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (16 bp):
TTAATAAATTATTTAG
Found at i:24810297 original size:18 final size:19
Alignment explanation
Indices: 24810263--24810298 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
24810253 TAATAGTCAT
24810263 ATATTAGTTAATATTTATA
1 ATATTAGTTAATATTTATA
*
24810282 ATATTA-TTACTATTTAT
1 ATATTAGTTAATATTTAT
24810299 TGTAATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.56
Consensus pattern (19 bp):
ATATTAGTTAATATTTATA
Found at i:24810405 original size:13 final size:13
Alignment explanation
Indices: 24810388--24810420 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
24810378 TTATATTAAT
24810388 TATTATAATATGTA
1 TATTATAAT-TGTA
24810402 -ATTATAATTGTA
1 TATTATAATTGTA
24810414 TATTATA
1 TATTATA
24810421 TATTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (13 bp):
TATTATAATTGTA
Found at i:24810423 original size:25 final size:25
Alignment explanation
Indices: 24810388--24810447 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
24810378 TTATATTAAT
* *
24810388 TATTATAATATGTA-ATTATAATTGTA
1 TATTAT-ATAT-TATATAATAATTATA
*
24810414 TATTATATATTATATAATAATTATT
1 TATTATATATTATATAATAATTATA
24810439 TATTATATA
1 TATTATATA
24810448 ATTTAATTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.07
25 22 0.73
26 6 0.20
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (25 bp):
TATTATATATTATATAATAATTATA
Found at i:24810442 original size:18 final size:18
Alignment explanation
Indices: 24810415--24810449 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
24810405 ATAATTGTAT
24810415 ATTATATATTATATAATA
1 ATTATATATTATATAATA
*
24810433 ATTATTTATTATATAAT
1 ATTATATATTATATAAT
24810450 TTAATTGGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTATATATTATATAATA
Found at i:24810747 original size:13 final size:13
Alignment explanation
Indices: 24810729--24810753 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24810719 ATACTTTATT
24810729 AATAATTAGATTA
1 AATAATTAGATTA
24810742 AATAATTAGATT
1 AATAATTAGATT
24810754 TATTTGGATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
AATAATTAGATTA
Found at i:24810850 original size:15 final size:16
Alignment explanation
Indices: 24810824--24810854 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
24810814 TTTTTAATTT
24810824 AAACAATAATATATTA
1 AAACAATAATATATTA
24810840 AAACAAT-ATATATTA
1 AAACAATAATATATTA
24810855 GTTTAATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (16 bp):
AAACAATAATATATTA
Found at i:24810974 original size:21 final size:21
Alignment explanation
Indices: 24810946--24810987 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
24810936 CAATTATTTT
* *
24810946 AATTTTAAATTA-ATAAGTAA
1 AATTTTTAATTATATAAATAA
24810966 AATTTTTAATTATATAAATAA
1 AATTTTTAATTATATAAATAA
24810987 A
1 A
24810988 TTAGATTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
AATTTTTAATTATATAAATAA
Found at i:24811690 original size:92 final size:92
Alignment explanation
Indices: 24811575--24811749 Score: 226
Period size: 92 Copynumber: 1.9 Consensus size: 92
24811565 TTGCATGAAC
* ** *** *
24811575 AGAACCAATTATTTTATGACAAAACAAAATGTCATAATGTTTTGAAATAGATAATTA-TTTAGAT
1 AGAAACAATTATTTTACAACAAAACAAAATGTCATAACAATTTGAAATAGATAA-TAGTTTAAAT
* *
24811639 AGTCATAACTATTTCAACTTGATCGATG
65 AGACATAACTATTTAAACTTGATCGATG
* * *
24811667 AGAAACAATTGTTTTACAACAAAATAAAATGTCATAACAATTTGAAATAGATAATAGTTTAAATG
1 AGAAACAATTATTTTACAACAAAACAAAATGTCATAACAATTTGAAATAGATAATAGTTTAAATA
24811732 GACATAACTATTTAAACT
66 GACATAACTATTTAAACT
24811750 GGTTCAGTAA
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
91 2 0.03
92 68 0.97
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.34
Consensus pattern (92 bp):
AGAAACAATTATTTTACAACAAAACAAAATGTCATAACAATTTGAAATAGATAATAGTTTAAATA
GACATAACTATTTAAACTTGATCGATG
Found at i:24811971 original size:181 final size:180
Alignment explanation
Indices: 24811667--24812263 Score: 618
Period size: 180 Copynumber: 3.3 Consensus size: 180
24811657 TTGATCGATG
* * * * * *
24811667 AGAAACAATTGTTTTACAACAAAATAAAATGTCATAACAATTTGAAATAGATAATAGTTTAAATG
1 AGAAACAATTGTTTTATAACAAAACAAAATGTCATAACGATTTGAAATAGATAATTGTTCAAA-C
* * * *
24811732 GA-CATAACTATTTAAACTGGTTCAGTAAACTAATTAATTTTTTAAATCTTCA-ACTTATTAATT
65 AATCATAACTATTT-AACTCGTTCAGTAAACAAATTTATTTTTTAAATCTT-ATACTTATTAATT
* *
24811795 TTTAGAATGTTAATATATTAGTATTATTTTATTCCAAATAAACTTGTATAAAT
128 TTTAGAATATTAATATATTAGTATTATTTTATTCCAAATAAACTTGTATGAAT
* *
24811848 AGAAACAATTATTTTATAACAAAACAAAA-GATCATAACGATTTGAAATAAATAATTGTTCAAAC
1 AGAAACAATTGTTTTATAACAAAACAAAATG-TCATAACGATTTGAAATAGATAATTGTTCAAAC
** * *
24811912 AATCATAACTATTTGAACTCACTCGGTAAACAAATTTATTTTTTAAATCTTTTACTTATTAA-TT
65 AATCATAACTATTT-AACTCGTTCAGTAAACAAATTTATTTTTTAAATCTTATACTTATTAATTT
* * *
24811976 TTGGAATATTAAT-TAATTAGAATTATTTTATTCCAAATAAGA-TTGTTTGAAT
129 TTAGAATATTAATAT-ATTAGTATTATTTTATTCCAAATAA-ACTTGTATGAAT
* * * *
24812028 AGAAACAATTGGTTTATGACAAAAC-ATATGATCATAATGATTTGAAATAGATAATTGTTCAAAC
1 AGAAACAATTGTTTTATAACAAAACAAAATG-TCATAACGATTTGAAATAGATAATTGTTCAAAC
* * * * * * * * *
24812092 AGTCATAGCTATTTAAATGTGTTCAGAAAATAATTTTATTTTCTAAA-ATTATACTTATTAATTT
65 AATCATAACTATTTAACT-CGTTCAGTAAACAAATTTATTTTTTAAATCTTATACTTATTAATTT
* * * ** * *
24812156 TTCGAATATTAATAAATTTA-TATTATTTTATTCAAAATACGCTTGCATGAAC
129 TTAGAATATTAATATA-TTAGTATTATTTTATTCCAAATAAACTTGTATGAAT
* * * * * *
24812208 AGAACCAATTGTTTTATTACAAAAGAAAATGTCATGATGTTTTGAAATAGATAATT
1 AGAAACAATTGTTTTATAACAAAACAAAATGTCATAACGATTTGAAATAGATAATT
24812264 ATTTAGATAG
Statistics
Matches: 347, Mismatches: 57, Indels: 25
0.81 0.13 0.06
Matches are distributed among these distances:
179 18 0.05
180 217 0.63
181 112 0.32
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.39
Consensus pattern (180 bp):
AGAAACAATTGTTTTATAACAAAACAAAATGTCATAACGATTTGAAATAGATAATTGTTCAAACA
ATCATAACTATTTAACTCGTTCAGTAAACAAATTTATTTTTTAAATCTTATACTTATTAATTTTT
AGAATATTAATATATTAGTATTATTTTATTCCAAATAAACTTGTATGAAT
Found at i:24812894 original size:15 final size:16
Alignment explanation
Indices: 24812867--24812934 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 16
24812857 AATTTATTTC
24812867 AATTAGTTATTATAAT
1 AATTAGTTATTATAAT
*
24812883 AATTAG-TATTATTAT
1 AATTAGTTATTATAAT
24812898 AACTTA-TTA--ACTAAT
1 AA-TTAGTTATTA-TAAT
*
24812913 AATTA-TTAATA-AAT
1 AATTAGTTATTATAAT
24812927 AATT-GTTA
1 AATTAGTTA
24812935 ATAGATTAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 14
0.73 0.03 0.23
Matches are distributed among these distances:
14 17 0.39
15 15 0.34
16 12 0.27
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (16 bp):
AATTAGTTATTATAAT
Found at i:24813018 original size:22 final size:23
Alignment explanation
Indices: 24812976--24813018 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
24812966 TAATCTAATT
*
24812976 CATTTTAAATTTAATAGAAATAG
1 CATTTTAAATTTAATAAAAATAG
24812999 CATTTTAAA-TTAATAAAAAT
1 CATTTTAAATTTAATAAAAAT
24813019 TATTTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.40
Consensus pattern (23 bp):
CATTTTAAATTTAATAAAAATAG
Found at i:24813058 original size:19 final size:19
Alignment explanation
Indices: 24813011--24813078 Score: 54
Period size: 19 Copynumber: 3.7 Consensus size: 19
24813001 TTTTAAATTA
*
24813011 ATAAAAATTATT-TTAAAT
1 ATAATAATTATTATTAAAT
**
24813029 ATGAACGATTATTATTAAAT
1 AT-AATAATTATTATTAAAT
* *
24813049 ATAATAATTA-AATT-ATT
1 ATAATAATTATTATTAAAT
24813066 AT-ATAATTATTAT
1 ATAATAATTATTAT
24813079 ATTTTGTCTA
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
16 7 0.17
17 6 0.15
18 5 0.12
19 14 0.35
20 8 0.20
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (19 bp):
ATAATAATTATTATTAAAT
Found at i:24813208 original size:15 final size:16
Alignment explanation
Indices: 24813188--24813253 Score: 68
Period size: 15 Copynumber: 4.3 Consensus size: 16
24813178 CTTTATTAAC
24813188 AATATA-TAAATAATT
1 AATATAGTAAATAATT
24813203 AATATAGTAAAT-ATT
1 AATATAGTAAATAATT
* *
24813218 -ATATAATTATATAATT
1 AATAT-AGTAAATAATT
*
24813234 AAAATA-TAAATAATT
1 AATATAGTAAATAATT
24813249 AATAT
1 AATAT
24813254 TATTATTAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
14 4 0.10
15 26 0.62
16 9 0.21
17 3 0.07
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (16 bp):
AATATAGTAAATAATT
Found at i:24813394 original size:16 final size:15
Alignment explanation
Indices: 24813358--24813396 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
24813348 TGACATGTAT
*
24813358 ATTATATTATATTTA
1 ATTATAATATATTTA
*
24813373 AATATAATATATTTTA
1 ATTATAATATA-TTTA
24813389 ATTATAAT
1 ATTATAAT
24813397 TAAAATAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTATAATATATTTA
Found at i:24813410 original size:27 final size:25
Alignment explanation
Indices: 24813355--24813411 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 25
24813345 ATTTGACATG
* *
24813355 TATATTATATTATATTTAAATATAA
1 TATATTATATTATATTAAAATAAAA
*
24813380 TATATTTTAATTATAATTAAAATAAAA
1 TATATTAT-ATTAT-ATTAAAATAAAA
24813407 TATAT
1 TATAT
24813412 ATTATTACTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 7 0.26
26 5 0.19
27 15 0.56
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
TATATTATATTATATTAAAATAAAA
Found at i:24813579 original size:21 final size:21
Alignment explanation
Indices: 24813536--24813587 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
24813526 ATTGTATTAT
*
24813536 TAATTATAATTATATTATCAA
1 TAATTATAATTATACTATCAA
*
24813557 TAATTATGATTAATACTAT-AA
1 TAATTATAATT-ATACTATCAA
24813578 TATATT-TAAT
1 TA-ATTATAAT
24813588 AGTTAAATCA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 17 0.65
22 9 0.35
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (21 bp):
TAATTATAATTATACTATCAA
Found at i:24813808 original size:12 final size:12
Alignment explanation
Indices: 24813791--24813815 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24813781 TTATCATAGC
24813791 TTATTTAAATTA
1 TTATTTAAATTA
24813803 TTATTTAAATTA
1 TTATTTAAATTA
24813815 T
1 T
24813816 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTATTTAAATTA
Found at i:24814013 original size:16 final size:17
Alignment explanation
Indices: 24813981--24814013 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
24813971 AAAAAAGGTT
24813981 ATAACGATTTGAAATAG
1 ATAACGATTTGAAATAG
*
24813998 ATAACTATTT-AAATAG
1 ATAACGATTTGAAATAG
24814014 TCATGACTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.33
Consensus pattern (17 bp):
ATAACGATTTGAAATAG
Found at i:24814686 original size:366 final size:356
Alignment explanation
Indices: 24813855--24814842 Score: 1048
Period size: 366 Copynumber: 2.7 Consensus size: 356
24813845 AAACTTGTTC
* * *
24813855 GGTAAATAGATTCATTTTTTAAATCTCTTAATTATTAATTTTCAAAATATTAATA-ACTT-GATA
1 GGTAAACAGATTTATTTTTTAAATCTCTT-ATTATTAATTTTCAGAATATTAATAGA-TTAG-TA
* **
24813918 TTATTTTATTTCGAATAAGCTTATATGAATTGAAATAATT-TTTTAATGACAGAAA-AAAAGGTT
63 TTATTTTATTTCAAATAAGCTTATATGAATAAAAATAATTGTTTT-ATGACA-AAACAAAAGGTT
* * * * * * * * * *
24813981 ATAACGATTTGAAATAGATAACTATTTAAATAGTCATGACTGTTTGATCTAGTTCAGTAAACATA
126 ATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTT-AGTAAAAAGA
* * ** *
24814046 TTTAATTTTTTACATT-TTTTAATTATTAATTGTCAAAATATTAATAAATTTGTATTATTTTAAT
190 TTT-ATTTTTTA-ATTCTCTTACTTATTAATT-TTGAAATATTAATAAATTTATATTATTTTAAT
* *
24814110 TCGAATAAGCTTTAATAAATAGAAACTATTATCTTATAACAAAACAAAAAGTCATAATGATTTGA
252 TCAAATAAGCTTTAATAAATAGAAAATATTATCTTATAACAAAACAAAAAGTCATAATGATTTGA
*
24814175 AATAAATAATTGCTTAAATAATCTTAATTTGAACCAGTTT
317 AATAAATAATTGATTAAATAATCTTAATTTGAACCAGTTT
* ** *
24814215 GGTAAATAGATTTA-TTTTTAAAAAT-TT-TTATTAATTTT-TGAAATATTAATAGATTAGTATT
1 GGTAAACAGATTTATTTTTTAAATCTCTTATTATTAATTTTCAG-AATATTAATAGATTAGTATT
* * *
24814276 ATTTTATTTCAAATAAACTTATATGAACAAAAA-CATTAGTTTTATGACAAAACAAAAGGTTATA
65 ATTTTATTTCAAATAAGCTTATATGAATAAAAATAATT-GTTTTATGACAAAACAAAAGGTTATA
* *
24814340 ACAATTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTGGTTAGGTAAAAAGAATT
129 ACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTA-GTAAAAAGATTT
* * * *
24814405 ATTTTTTAATTCTCTTACTTATTAATGTTTGAAATTTTAATTATTTTATTTTATTTT-ATTCTAA
193 ATTTTTTAATTCTCTTACTTATTAAT-TTTGAAATATTAATAAATTTATATTATTTTAATTC-AA
* * * * * * * * *
24814469 ATAAGCTAGTATGATGAATTGAAAATATTGTTTTATGACAAAACAAAAGGTTATAATGGTTTGAA
256 ATAAGCT--T-TAATAAATAGAAAATATTATCTTATAACAAAACAAAAAGTCATAATGATTTGAA
* * * * *
24814534 ATAAATAATTTATTCATATAGTTTTAACTATTTGAACTAGTTT
318 ATAAATAATTGATT-AAATAATCTT-A--ATTTGAACCAGTTT
* *
24814577 GGTAAACA-ATTTTATTTTTTAAATCTCTTAGTTATTAATTTTCAGAATATTATTAGATTAGTTT
1 GGTAAACAGA-TTTATTTTTTAAATCTCTTA-TTATTAATTTTCAGAATATTAATAGATTAGTAT
* *
24814641 TATTTTATTTCAAATAAGCTTGTATGAATAAAAATAATTGTTTTATGATAAAACAAAAGGTTATA
64 TATTTTATTTCAAATAAGCTTATATGAATAAAAATAATTGTTTTATGACAAAACAAAAGGTTATA
* * * * * * * *
24814706 ACAATTTGAAGTATACAATTGCTCTAATAGTCATAACTATTTGAATTGGTTTTGTAAATAGATTT
129 ACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGG-TTAGTAAAAAGATTT
* * * *
24814771 ATTTTTTAAATCTCTTACTTATTAATTTTTGAAAGATTAATAAA-TTAGTATTATTTTATTTCGA
193 ATTTTTTAATTCTCTTACTTATTAA-TTTTGAAATATTAATAAATTTA-TATTATTTTAATTCAA
24814835 ATAAGCTT
256 ATAAGCTT
24814843 GTATGATAAA
Statistics
Matches: 522, Mismatches: 78, Indels: 52
0.80 0.12 0.08
Matches are distributed among these distances:
354 7 0.01
355 57 0.11
356 124 0.24
357 7 0.01
358 58 0.11
359 16 0.03
360 14 0.03
361 1 0.00
362 24 0.05
363 9 0.02
364 3 0.01
365 3 0.01
366 189 0.36
367 10 0.02
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.44
Consensus pattern (356 bp):
GGTAAACAGATTTATTTTTTAAATCTCTTATTATTAATTTTCAGAATATTAATAGATTAGTATTA
TTTTATTTCAAATAAGCTTATATGAATAAAAATAATTGTTTTATGACAAAACAAAAGGTTATAAC
AATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTAGTAAAAAGATTTATT
TTTTAATTCTCTTACTTATTAATTTTGAAATATTAATAAATTTATATTATTTTAATTCAAATAAG
CTTTAATAAATAGAAAATATTATCTTATAACAAAACAAAAAGTCATAATGATTTGAAATAAATAA
TTGATTAAATAATCTTAATTTGAACCAGTTT
Found at i:24814795 original size:181 final size:181
Alignment explanation
Indices: 24813838--24814946 Score: 931
Period size: 181 Copynumber: 6.1 Consensus size: 181
24813828 ATTTAAAATG
* * * * *
24813838 ACTATTTAAACTTGTTCGGTAAATAGATTCATTTTTTAAATCTCTTAATTATTAATTTTCAAAAT
1 ACTATTTGAACTAGTTTGGTAAATAGATTTATTTTTTAAATCTCTTAATTATTAATTTTCAGAAT
* * **
24813903 ATTAATAACTT-GATATTATTTTATTTCGAATAAGCTTATATGAATTGAAATAATT-TTTTAATG
66 ATTAATAAATTAG-TATTATTTTATTTCAAATAAGCTTATATGAATAAAAATAATTGTTTT-ATG
* * * *
24813966 ACAGAAA-AAAAGGTTATAACGATTTGAAATAGATAACT-ATTTAAATAGTCATG
129 ACA-AAACAAAAGGTTATAACAATTTGAAATAAATAATTGA-TTAAATAGTCATA
* * ** * * * * * * *
24814019 ACTGTTTGATCTAGTTCAGTAAACATATTTAATTTTTTACATTTTTTAATTATTAATTGTCAAAA
1 ACTATTTGAACTAGTTTGGTAAATAGATTT-ATTTTTTAAATCTCTTAATTATTAATTTTCAGAA
* * * * * * *
24814084 TATTAATAAATTTGTATTATTTTAATTCGAATAAGCTT-TAATAAATAGAAACT-ATTATCTTAT
65 TATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTAT-ATGAATA-AAAATAATTGTTTTAT
* * * ** * * *
24814147 AACAAAACAAAAAGTCATAATGATTTGAAATAAATAATTGCTTAAATAATC-TT
128 GACAAAACAAAAGGTTATAACAATTTGAAATAAATAATTGATTAAATAGTCATA
* ** *
24814200 A--ATTTGAACCAGTTTGGTAAATAGATTTA-TTTTTAAAAAT-TT--TTATTAATTTT-TGAAA
1 ACTATTTGAACTAGTTTGGTAAATAGATTTATTTTTTAAATCTCTTAATTATTAATTTTCAG-AA
* * * *
24814258 TATTAATAGATTAGTATTATTTTATTTCAAATAAACTTATATGAACAAAAA-CATTAGTTTTATG
65 TATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAATAAAAATAATT-GTTTTATG
*
24814322 ACAAAACAAAAGGTTATAACAATTTGAAATAGATAATTG-TTCAAATAGTCATA
129 ACAAAACAAAAGGTTATAACAATTTGAAATAAATAATTGATT-AAATAGTCATA
* * * * * * * *
24814375 ATTATTTGAACTGGTTAGGTAAAAAGAATTATTTTTTAATTCTCTTACTTATTAATGTTTGA-AA
1 ACTATTTGAACTAGTTTGGTAAATAGATTTATTTTTTAAATCTCTTAATTATTAAT-TTTCAGAA
* ** * *
24814439 TTTTAATTATTTTA-TTTTATTTTA-TTCTAAATAAGCTAGTATGATGAATTGAAAAT-ATTGTT
65 TATTAA-TAAATTAGTATTATTTTATTTC-AAATAAGCT--TAT-ATGAA-TAAAAATAATTGTT
*** * * **
24814501 TTATGACAAAACAAAAGGTTATAATGGTTTGAAATAAATAATTTATTCATATAGTTTTA
124 TTATGACAAAACAAAAGGTTATAACAATTTGAAATAAATAATTGATT-AAATAGTCATA
* *
24814560 ACTATTTGAACTAGTTTGGTAAACA-ATTTTATTTTTTAAATCTCTTAGTTATTAATTTTCAGAA
1 ACTATTTGAACTAGTTTGGTAAATAGA-TTTATTTTTTAAATCTCTTAATTATTAATTTTCAGAA
* * * *
24814624 TATTATTAGATTAGTTTTATTTTATTTCAAATAAGCTTGTATGAATAAAAATAATTGTTTTATGA
65 TATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAATAAAAATAATTGTTTTATGA
* * * * *
24814689 TAAAACAAAAGGTTATAACAATTTGAAGTATACAATTGCTCT-AATAGTCATA
130 CAAAACAAAAGGTTATAACAATTTGAAATAAATAATTGAT-TAAATAGTCATA
* * * * *
24814741 ACTATTTGAATTGGTTTTGTAAATAGATTTATTTTTTAAATCTCTTACTTATTAATTTT-TGAAA
1 ACTATTTGAACTAGTTTGGTAAATAGATTTATTTTTTAAATCTCTTAATTATTAATTTTCAG-AA
* * * * **
24814805 GATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATG-ATAAAAAACAATTGTCATATG
65 TATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAAT-AAAAATAATTGTTTTATG
* * * * * *
24814869 ACCAAACAAAAGG-TAGGAACAATTTGAATTAGATAATT-ATTGAAATGGCCATA
129 ACAAAACAAAAGGTTA-TAACAATTTGAAATAAATAATTGATT-AAATAGTCATA
*
24814922 ATTATTTGAACT-GATTTGGTAAATA
1 ACTATTTGAACTAG-TTTGGTAAATA
24814947 TATTCACATT
Statistics
Matches: 751, Mismatches: 135, Indels: 84
0.77 0.14 0.09
Matches are distributed among these distances:
173 8 0.01
174 96 0.13
175 3 0.00
176 2 0.00
177 31 0.04
178 9 0.01
179 23 0.03
180 10 0.01
181 237 0.32
182 169 0.23
183 13 0.02
184 57 0.08
185 90 0.12
186 3 0.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (181 bp):
ACTATTTGAACTAGTTTGGTAAATAGATTTATTTTTTAAATCTCTTAATTATTAATTTTCAGAAT
ATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAATAAAAATAATTGTTTTATGAC
AAAACAAAAGGTTATAACAATTTGAAATAAATAATTGATTAAATAGTCATA
Found at i:24816235 original size:11 final size:10
Alignment explanation
Indices: 24816201--24816250 Score: 50
Period size: 11 Copynumber: 4.9 Consensus size: 10
24816191 TTTATTAATA
24816201 ATAATTA-AT
1 ATAATTATAT
*
24816210 ATTAATTGTATT
1 A-TAATTATA-T
24816222 ATAATTATTAT
1 ATAATTA-TAT
24816233 ATAATTA-AT
1 ATAATTATAT
24816242 ATAATTATA
1 ATAATTATA
24816251 CTAATATAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
9 10 0.29
10 6 0.18
11 14 0.41
12 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (10 bp):
ATAATTATAT
Found at i:24816744 original size:181 final size:178
Alignment explanation
Indices: 24816493--24816986 Score: 500
Period size: 181 Copynumber: 2.7 Consensus size: 178
24816483 TATGATGAAC
* * * *
24816493 AACAATTGTTTTATGATAAAACAAAAGTTCAAAATGATTTGAAATAGATAATTGTTCAAATAGCC
1 AACAATTATTTTATGATAAAACAAAAGGTCAAAATGATTTGAAATAGATAA-TGTTTAAATAGTC
*
24816558 ATAACTATTTGAACTGATTCAATAAAATGATTTATGTTTTAAATCTCC-AACTTCTTAA-TTTTT
65 ATAACTATTTGAACTG-TTCAATAAAATGATTTAT-TTTTAAATCTCCTAACTTATTAATTTTTT
* *** * *
24816621 GAAATATTAATAAAGTAATACAATTTTATTTTGGATAAGCTTTTATGAAATG
128 G-AATATTAATAAAATAATACAATTTTATTTCAAATAAGCATGTATGAAATG
* * * *
24816673 AAATAATTATTTTATGATAAAACAAAAGGTCATAACGATTTTAAA-ATGATAACTGTTTAAATAG
1 -AACAATTATTTTATGATAAAACAAAAGGTCAAAATGATTTGAAATA-GATAA-TGTTTAAATAG
* *** * **
24816737 TCATAACTATTTAAACTTGTTTGGTAAACA-GATTTATTTTTTAAT-TCCTTGCTTATTAATTTT
63 TCATAACTATTTGAAC-TGTTCAATAAA-ATGATTTATTTTTAAATCTCCTAACTTATTAATTTT
* * * *
24816800 TTGAATGTTAATAAAATAGTACTATTTTATTTCAAATAAGCATGTATGAACTG
126 TTGAATATTAATAAAATAATACAATTTTATTTCAAATAAGCATGTATGAAATG
** *
24816853 AACAATTATTTTATGACCAAACAAAAGGTCAGAATGATTTGAAATAGATAAT-TATTATAATAGT
1 AACAATTATTTTATGATAAAACAAAAGGTCAAAATGATTTGAAATAGATAATGT-TTA-AATAGT
* * * *
24816917 CTTAACTATTTGAACTGGTTCAA-CAAATACATTTATTTTTTAAATCTCTTAA-TTATTAATTTT
64 CATAACTATTTGAACT-GTTCAATAAAAT-GATTTA-TTTTTAAATCTCCTAACTTATTAATTTT
*
24816980 TAGAATA
126 TTGAATA
24816987 GTACAAATAC
Statistics
Matches: 254, Mismatches: 46, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
177 2 0.01
178 7 0.03
179 73 0.29
180 80 0.31
181 89 0.35
182 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (178 bp):
AACAATTATTTTATGATAAAACAAAAGGTCAAAATGATTTGAAATAGATAATGTTTAAATAGTCA
TAACTATTTGAACTGTTCAATAAAATGATTTATTTTTAAATCTCCTAACTTATTAATTTTTTGAA
TATTAATAAAATAATACAATTTTATTTCAAATAAGCATGTATGAAATG
Found at i:24816979 original size:24 final size:24
Alignment explanation
Indices: 24816951--24817030 Score: 65
Period size: 24 Copynumber: 3.2 Consensus size: 24
24816941 AAATACATTT
24816951 ATTTTTTAAATCTCTTAATTATTA
1 ATTTTTTAAATCTCTTAATTATTA
* * * *
24816975 A-TTTTTAGAATAGTAC-AAATACATTT
1 ATTTTTTA-AAT-CT-CTTAAT-TATTA
*
24817001 ATTTTTTAAATCTCTTAGTTATTA
1 ATTTTTTAAATCTCTTAATTATTA
24817025 ATTTTT
1 ATTTTT
24817031 AGAATATTAT
Statistics
Matches: 41, Mismatches: 9, Indels: 12
0.66 0.15 0.19
Matches are distributed among these distances:
23 6 0.15
24 14 0.34
25 7 0.17
26 8 0.20
27 6 0.15
ACGTcount: A:0.34, C:0.07, G:0.04, T:0.55
Consensus pattern (24 bp):
ATTTTTTAAATCTCTTAATTATTA
Found at i:24816994 original size:50 final size:50
Alignment explanation
Indices: 24816939--24817036 Score: 187
Period size: 50 Copynumber: 2.0 Consensus size: 50
24816929 AACTGGTTCA
24816939 ACAAATACATTTATTTTTTAAATCTCTTAATTATTAATTTTTAGAATAGT
1 ACAAATACATTTATTTTTTAAATCTCTTAATTATTAATTTTTAGAATAGT
*
24816989 ACAAATACATTTATTTTTTAAATCTCTTAGTTATTAATTTTTAGAATA
1 ACAAATACATTTATTTTTTAAATCTCTTAATTATTAATTTTTAGAATA
24817037 TTATTGGTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.38, C:0.08, G:0.04, T:0.50
Consensus pattern (50 bp):
ACAAATACATTTATTTTTTAAATCTCTTAATTATTAATTTTTAGAATAGT
Found at i:24817678 original size:18 final size:19
Alignment explanation
Indices: 24817632--24817682 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
24817622 GAAACAAAAG
*
24817632 GTCATAACAATTTGAAATA
1 GTCATAACTATTTGAAATA
*
24817651 G--ATAATTATTT-AAATA
1 GTCATAACTATTTGAAATA
24817667 GTCATAACTATTTGAA
1 GTCATAACTATTTGAA
24817683 CTTGTTTGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
16 6 0.23
17 8 0.31
18 9 0.35
19 3 0.12
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (19 bp):
GTCATAACTATTTGAAATA
Found at i:24817736 original size:181 final size:181
Alignment explanation
Indices: 24817328--24818040 Score: 774
Period size: 181 Copynumber: 3.9 Consensus size: 181
24817318 AACTCACTCA
* * *
24817328 ATAAACAAATTTATTTTTTAAATATTTTACTTATTAATTTTTGAAATTTTAATAAA-TTAGTATT
1 ATAAATAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTTAGTATT
* * * * ** * *
24817392 ATTTAATTTCAAATAAGATTTTATGAATAGAAATAATTGGTTTATAACAAAACAAAAAGGTCATA
66 ATTTAATTT-GAATAAGCTTATATGAATAAAAATAATTATTTTATGACGAAAC-AAAAGGTCATA
* * * * * * *
24817457 ACGATTTGAAATAGATAATTGTTCAAATGGTCATAATTATTTTGAACATGTTTA
129 ACAATTTGAAATAGATAATTATTTAAATAGTCATAACTA-TTTGAACTTGTTTG
* * * * * *
24817511 AAAAATAAATTTATTTTATATAT-TTTTACTTATTAATCTTTGGAATATTAGTAAATTTA-TATT
1 ATAAATAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTTAGTATT
* * *
24817574 ATTTTATTTGAAATAAGCTTATATGAATAAAAAAAATTATTTTATGGCGAAACAAAAGGTCATAA
66 ATTTAATTTG-AATAAGCTTATATGAATAAAAATAATTATTTTATGACGAAACAAAAGGTCATAA
24817639 CAATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTTG
130 CAATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTTG
* * * * * * * *
24817691 GTAAATAGATTCATTTTTTAAATCTCTTACTCATTAATTTTTGGAATAGTAAT-AAGTTAGTATT
1 ATAAATAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTTAGTATT
* ** * * **
24817755 ATTCT-ATTTCGAATAAGCCTATATGAATTGATATAATTGTTTTATGGTGAAACAAAAGGTCATA
66 ATT-TAATTT-GAATAAGCTTATATGAATAAAAATAATTATTTTATGACGAAACAAAAGGTCATA
* * * * *
24817819 ACGATTTGAAATAGACAATTATTTAGATAGTTATTACTATTTGAACTTGTTTG
129 ACAATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTTG
* * * *
24817872 ATAAACATATTTATTTTTTAAATCTTTTACTTATTAATTGTTGAAATATTAATAAA-TTAATATT
1 ATAAATAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTTAGTATT
** * *
24817936 ATTGTAATCCGAATAAGCTAATATGAACAAAAATAATTATTTTATGAC-AGAACAAAAGGTCATA
66 ATT-TAATTTGAATAAGCTTATATGAATAAAAATAATTATTTTATGACGA-AACAAAAGGTCATA
* * * *
24818000 ATAATTTGAAATAAATAATTGTTTCAATAGTCATAACTATT
129 ACAATTTGAAATAGATAATTATTTAAATAGTCATAACTATT
24818041 CAAAATTATT
Statistics
Matches: 440, Mismatches: 81, Indels: 20
0.81 0.15 0.04
Matches are distributed among these distances:
180 35 0.08
181 304 0.69
182 79 0.18
183 22 0.05
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (181 bp):
ATAAATAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTGAAATATTAATAAATTTAGTATT
ATTTAATTTGAATAAGCTTATATGAATAAAAATAATTATTTTATGACGAAACAAAAGGTCATAAC
AATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTTG
Found at i:24817978 original size:362 final size:363
Alignment explanation
Indices: 24817340--24818040 Score: 892
Period size: 362 Copynumber: 1.9 Consensus size: 363
24817330 AAACAAATTT
* * **
24817340 ATTTTTTAAATATTTTACTTATTAATTTTTGAAATTTTAATAAATTAGTATTATTTAATTTCAAA
1 ATTTTTTAAATATCTTACTCATTAATTTTTGAAATAGTAATAAATTAGTATTATTTAATTTCAAA
* *
24817405 TAAGATTTTATGAATAGAAATAATTGGTTTATAACAAAACAAAAAGGTCATAACGATTTGAAATA
66 TAAGACTATATGAATAGAAATAATTGGTTTATAACAAAACAAAAAGGTCATAACGATTTGAAATA
* * * * * *
24817470 GATAATTGTTCAAATGGTCATAATTATTTTGAACATGTTTAAAAAATAAATTTATTTTATATATT
131 GACAATTATTCAAATAGTCATAACTATTTTGAACATGTTTAAAAAACAAATTTATTTTATAAATT
* * * * ** *
24817535 TTTACTTATTAATCTTTGGAATATTAGTAAATTTATATTATTTTATTTGAAATAAGCTTATATGA
196 TTTACTTATTAATCTTTGAAATATTAATAAATTAATATTATTTAATCCGAAATAAGCTAATATGA
* * *
24817600 ATAAAAAAAATTATTTTATGGC-GAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTTAA
261 ACAAAAAAAATTATTTTATGACAG-AACAAAAGGTCATAACAATTTGAAATAAATAATTATTTAA
24817664 ATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTC
325 ATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTC
* * * *
24817703 ATTTTTTAAATCTCTTACTCATTAATTTTTGGAATAGTAATAAGTTAGTATTATTCT-ATTTCGA
1 ATTTTTTAAATATCTTACTCATTAATTTTTGAAATAGTAATAAATTAGTATTATT-TAATTTCAA
* * * * ****
24817767 ATAAGCCTATATGAATTGATATAATTGTTTTATGGTGAAAC-AAAAGGTCATAACGATTTGAAAT
65 ATAAGACTATATGAATAGAAATAATTGGTTTATAACAAAACAAAAAGGTCATAACGATTTGAAAT
* * * * * * * * *
24817831 AGACAATTATTTAGATAGTTATTACTA-TTTGAACTTGTTTGATAAACATATTTATTTTTTAAAT
130 AGACAATTATTCAAATAGTCATAACTATTTTGAACATGTTTAAAAAACAAATTTATTTTATAAAT
24817895 CTTTTACTTATTAAT-TGTTGAAATATTAATAAATTAATATTATTGTAATCCG-AATAAGCTAAT
195 -TTTTACTTATTAATCT-TTGAAATATTAATAAATTAATATTATT-TAATCCGAAATAAGCTAAT
* * *
24817958 ATGAACAAAAATAATTATTTTATGACAGAACAAAAGGTCATAATAATTTGAAATAAATAATTGTT
257 ATGAACAAAAAAAATTATTTTATGACAGAACAAAAGGTCATAACAATTTGAAATAAATAATTATT
*
24818023 TCAATAGTCATAACTATT
322 TAAATAGTCATAACTATT
24818041 CAAAATTATT
Statistics
Matches: 286, Mismatches: 47, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
361 31 0.11
362 164 0.57
363 90 0.31
364 1 0.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (363 bp):
ATTTTTTAAATATCTTACTCATTAATTTTTGAAATAGTAATAAATTAGTATTATTTAATTTCAAA
TAAGACTATATGAATAGAAATAATTGGTTTATAACAAAACAAAAAGGTCATAACGATTTGAAATA
GACAATTATTCAAATAGTCATAACTATTTTGAACATGTTTAAAAAACAAATTTATTTTATAAATT
TTTACTTATTAATCTTTGAAATATTAATAAATTAATATTATTTAATCCGAAATAAGCTAATATGA
ACAAAAAAAATTATTTTATGACAGAACAAAAGGTCATAACAATTTGAAATAAATAATTATTTAAA
TAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTC
Found at i:24818390 original size:181 final size:180
Alignment explanation
Indices: 24818067--24818702 Score: 582
Period size: 181 Copynumber: 3.5 Consensus size: 180
24818057 ACAGATTTGA
* * * * * * * *
24818067 AATAAGCTTGTATGAATAGAAAA-AAATATTTTATGACAATACAAAAGGTTATAGCAATTT-AAA
1 AATAAGCTTATATGAACA-AAAACAATTGTTTTATGATAAAACAAAAGGTCATAACAATTTGAAA
* ** * * * ** ** * * *
24818130 CTAGATAATTGTGCAAATAGCCATCATTATTTGAACTTGTTCGGTAAACAGATTCATTTTTTA-A
65 -TAGATAATTGTTCAAATAGTTATAATTAATTGAACTGGTAAGACAAATAGATACATTTTCTACA
* ** *
24818194 ATCTCTCACTTATTAATTTTTGGAATATTGATAAATTAGAATTATGTTATTCTG
129 ATC-CTTACTTATTAATTTTTAAAATATTAATAAATTAGAATTAT-TTATTCTG
* * * *
24818248 AATAAGCTTGTATGAACAAAAACAATTGTTTTGTGAGAAAACAAAAGGTCATAACGATTTGAAAT
1 AATAAGCTTATATGAACAAAAACAATTGTTTTATGATAAAACAAAAGGTCATAACAATTTGAAAT
** * *
24818313 AGATAATTGTTCAAATAGTTATAATTTTTTGCACTGGTCAAGCCAAA-AGATACATTTTCTA-AA
66 AGATAATTGTTCAAATAGTTATAATTAATTGAACTGGT-AAGACAAATAGATACATTTTCTACAA
* * * *
24818376 TCCATTATTTATTAATTTTCAAAATATTAATAAATTAGCATTACTTTATTTTG
130 TCC-TTACTTATTAATTTTTAAAATATTAATAAATTAGAATTA-TTTATTCTG
* * * *
24818429 AATAAGATTATATGAATAGAAACAATTGTTTTATGATAAAACAAATGGTCATAACAATTTGAAAT
1 AATAAGCTTATATGAACAAAAACAATTGTTTTATGATAAAACAAAAGGTCATAACAATTTGAAAT
* * * * * ** * *
24818494 AAAATATTTGGTCAAATAGTTATAACTAATTGAACTGGTATGACAAATAGATTTATTTTTTACAT
66 -AGATAATTGTTCAAATAGTTATAATTAATTGAACTGGTAAGACAAATAGATACATTTTCTACAA
* * * **
24818559 TTCTTACGTATTAATTTTTTAAATATTAATAAATTA-ATATTATTTTATTCCA
130 TCCTTACTTATTAATTTTTAAAATATTAATAAATTAGA-ATTA-TTTATTCTG
* * * *
24818611 AACAAACTTATATGAACAAAAACATTTGTTTTATGATAAAACAAAAGGTAATAACAATTTGAAAT
1 AATAAGCTTATATGAACAAAAACAATTGTTTTATGATAAAACAAAAGGTCATAACAATTTGAAAT
* * *
24818676 AGATAATTATTCGAATAGTCATAATTA
66 AGATAATTGTTCAAATAGTTATAATTA
24818703 TTAGAAATAG
Statistics
Matches: 370, Mismatches: 76, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
180 5 0.01
181 216 0.58
182 146 0.39
183 3 0.01
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (180 bp):
AATAAGCTTATATGAACAAAAACAATTGTTTTATGATAAAACAAAAGGTCATAACAATTTGAAAT
AGATAATTGTTCAAATAGTTATAATTAATTGAACTGGTAAGACAAATAGATACATTTTCTACAAT
CCTTACTTATTAATTTTTAAAATATTAATAAATTAGAATTATTTATTCTG
Found at i:24818490 original size:482 final size:482
Alignment explanation
Indices: 24817579--24818496 Score: 1125
Period size: 482 Copynumber: 1.9 Consensus size: 482
24817569 ATATTATTTT
*
24817579 ATTTGAAATAAGCTTATATGAATAAAAAAAATTATTTTATGGCGAAACAAAAGGTCATAACAATT
1 ATTTGAAATAAGCTTATATGAATAAAAAAAATTATTTTATGACGAAACAAAAGGTCATAACAATT
** * * *
24817644 TGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAGATTCATTTTT
66 TGAAATAGATAATTATGCAAATAGCCATAACTATTTGAACTTGTTCGGTAAACAGATTCATTTTT
* * *
24817709 TAAATCTCTTACTCATTAATTTTTGGAATAGTAATAAGTTAGTATTATTCTATTTCGAATAAGCC
131 TAAATCTCTCACTCATTAATTTTTGGAATAGTAATAAATTAGAATTATTCTATTTCGAATAAGCC
*** * * *
24817774 TATATGAATTGATATAATTGTTTTATGGTGAAACAAAAGGTCATAACGATTTGAAATAGACAATT
196 TATATGAACAAAAACAATTGTTTTATGGTAAAACAAAAGGTCATAACGATTTGAAATAGACAATT
* * * * ** * * ** * **
24817839 ATTTAGATAGTTATTACTATTTGAACTTGTTTGATAAACATATTTATTTTTTAAATCTTTTACTT
261 ATTCAAATAGTTATAACTATTTGAACTGGTAAGACAAACAGATACATTTTCTAAATCCATTACTT
* * *
24817904 ATTAATTGTTGAAATATTAATAAATTAATATTATTGTAATCCGAATAAGCTAATATGAACAAAAA
326 ATTAATTGTTAAAATATTAATAAATTAACATTATTGTAATCCGAATAAGATAATATGAACAAAAA
* * *
24817969 TAATTATTTTATGACAGAACAAAAGGTCATAATAATTTGAAATAAATAATTGTTTCAATAGTCAT
391 CAATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAAATAATTGTTTCAATAGTCAT
24818034 AACTATTCAAAATTATTCGGTAAACAG
456 AACTATTCAAAATTATTCGGTAAACAG
* * *
24818061 ATTTGAAATAAGCTTGTATGAATAGAAAAAAA-TATTTTATGAC-AATACAAAAGGTTATAGCAA
1 ATTTGAAATAAGCTTATATGAATA-AAAAAAATTATTTTATGACGAA-ACAAAAGGTCATAACAA
* * *
24818124 TTT-AAACTAGATAATTGTGCAAATAGCCATCATTATTTGAACTTGTTCGGTAAACAGATTCATT
64 TTTGAAA-TAGATAATTATGCAAATAGCCATAACTATTTGAACTTGTTCGGTAAACAGATTCATT
* * *
24818188 TTTTAAATCTCTCACTTATTAATTTTTGGAATATTGATAAATTAGAATTATGT-TA-TTCTGAAT
128 TTTTAAATCTCTCACTCATTAATTTTTGGAATAGTAATAAATTAGAATTAT-TCTATTTC-GAAT
* * *
24818251 AAGCTTGTATGAACAAAAACAATTGTTTTGTGAG-AAAACAAAAGGTCATAACGATTTGAAATAG
191 AAGCCTATATGAACAAAAACAATTGTTTTATG-GTAAAACAAAAGGTCATAACGATTTGAAATAG
* * * * * *
24818315 ATAATTGTTCAAATAGTTATAATTTTTTGCACTGGTCAAGCCAAA-AGATACATTTTCTAAATCC
255 ACAATTATTCAAATAGTTATAACTATTTGAACTGGT-AAGACAAACAGATACATTTTCTAAATCC
* * * ** *
24818379 ATTATTTATTAATT-TTCAAAATATTAATAAATTAGCATTACTT-TATTTTGAATAAGATTATAT
319 ATTACTTATTAATTGTT-AAAATATTAATAAATTAACATTA-TTGTAATCCGAATAAGATAATAT
* * * * *
24818442 GAATAGAAACAATTGTTTTATGATAAAACAAATGGTCATAACAATTTGAAATAAA
382 GAACAAAAACAATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAAA
24818497 ATATTTGGTC
Statistics
Matches: 364, Mismatches: 63, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
481 10 0.03
482 339 0.93
483 15 0.04
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (482 bp):
ATTTGAAATAAGCTTATATGAATAAAAAAAATTATTTTATGACGAAACAAAAGGTCATAACAATT
TGAAATAGATAATTATGCAAATAGCCATAACTATTTGAACTTGTTCGGTAAACAGATTCATTTTT
TAAATCTCTCACTCATTAATTTTTGGAATAGTAATAAATTAGAATTATTCTATTTCGAATAAGCC
TATATGAACAAAAACAATTGTTTTATGGTAAAACAAAAGGTCATAACGATTTGAAATAGACAATT
ATTCAAATAGTTATAACTATTTGAACTGGTAAGACAAACAGATACATTTTCTAAATCCATTACTT
ATTAATTGTTAAAATATTAATAAATTAACATTATTGTAATCCGAATAAGATAATATGAACAAAAA
CAATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAAATAATTGTTTCAATAGTCAT
AACTATTCAAAATTATTCGGTAAACAG
Found at i:24818624 original size:182 final size:180
Alignment explanation
Indices: 24818179--24818676 Score: 543
Period size: 182 Copynumber: 2.7 Consensus size: 180
24818169 TTCGGTAAAC
* * ** * *
24818179 AGATTCATTTTTTAAATCTCTCACTTATTAATTTTTGGAATATTGATAAATTAGAATTATGTTAT
1 AGATTCATTTTTT-AATTTCTTACTTATTAATTTTTAAAATATTAATAAATTA-AATTATTTTAT
* * * * *
24818244 TCTGAATAAGCTTGTATGAACAAAAACAATTGTTTTGTGAGAAAACAAAAGGTCATAACGATTTG
64 TCTGAATAAACTTATATGAACAAAAACAATTGTTTTATGATAAAACAAAAGGTCATAACAATTTG
* * * ** * *
24818309 AAAT-AGATAATTGTTCAAATAGTTATAATTTTTTGCACTGGTCAAGCCAAA
129 AAATAAAATAATTGGTCAAATAGTTATAACTAATTGAACTGGTCAAGACAAA
* * * * * * * *
24818360 AGATACATTTTCTAAATCCATTATTTATTAATTTTCAAAATATTAATAAATTAGCATTACTTTAT
1 AGATTCATTTTTTAATTTC-TTACTTATTAATTTTTAAAATATTAATAAATTA-AATTATTTTAT
* * * *
24818425 TTTGAATAAGA-TTATATGAATAGAAACAATTGTTTTATGATAAAACAAATGGTCATAACAATTT
64 TCTGAATAA-ACTTATATGAACAAAAACAATTGTTTTATGATAAAACAAAAGGTCATAACAATTT
* *
24818489 GAAATAAAATATTTGGTCAAATAGTTATAACTAATTGAACTGGT-ATGACAAA
128 GAAATAAAATAATTGGTCAAATAGTTATAACTAATTGAACTGGTCAAGACAAA
* * *
24818541 TAGATTTATTTTTTACATTTCTTACGTATTAATTTTTTAAATATTAATAAATTAATATTATTTTA
1 -AGATTCATTTTTTA-ATTTCTTACTTATTAATTTTTAAAATATTAATAAATTAA-ATTATTTTA
** * * *
24818606 TTCCAAACAAACTTATATGAACAAAAACATTTGTTTTATGATAAAACAAAAGGTAATAACAATTT
63 TTCTGAATAAACTTATATGAACAAAAACAATTGTTTTATGATAAAACAAAAGGTCATAACAATTT
24818671 GAAATA
128 GAAATA
24818677 GATAATTATT
Statistics
Matches: 258, Mismatches: 52, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
180 3 0.01
181 113 0.44
182 139 0.54
183 3 0.01
ACGTcount: A:0.42, C:0.09, G:0.10, T:0.39
Consensus pattern (180 bp):
AGATTCATTTTTTAATTTCTTACTTATTAATTTTTAAAATATTAATAAATTAAATTATTTTATTC
TGAATAAACTTATATGAACAAAAACAATTGTTTTATGATAAAACAAAAGGTCATAACAATTTGAA
ATAAAATAATTGGTCAAATAGTTATAACTAATTGAACTGGTCAAGACAAA
Found at i:24819322 original size:179 final size:178
Alignment explanation
Indices: 24818730--24819492 Score: 744
Period size: 182 Copynumber: 4.2 Consensus size: 178
24818720 AACAGAATTG
* * * * * *
24818730 TTATGACTTTTGGTTTTGTAATAAAACAATTGTTTCTGTTCATACAAGCTTATTTGAATTAAAAT
1 TTATGACTTTT-GTTTTGTCAT-AAATAATTATTTCTATTCATACAAGCTTATTCGAAATAAAAT
*** *
24818795 AATATTAATTTATTAATATTTTGACAATTAATAAGA-AAAAGATTTAAAAAATAAATATGTTTAC
64 AATATTAATTTATTAATATTCCAAAAATTAATAA-ATAAAA-ATTTAAAAAATAAATATGTTTAC
* * * * *
24818859 CAAACAAGTTCAAATAGTCAAGACTATTTGAATAATTATGTATTTCAAATAA
127 CAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAATCA
* * * * * * * * *
24818911 TTGTGACATTTTATTTTGTAATAAAATAATTGTTTCAATTAACATAAGCTTATTTGAAATAAAAT
1 TTATGAC-TTTTGTTTTGTCAT-AAATAATTATTTCTATTCATACAAGCTTATTCGAAATAAAAT
* * * * * * * *
24818976 AGCT-CTAATTTATTAATATACCAAAAATTAATGAGTAAGAGAATTAAAAAAATGAATCTGTTTA
64 A-ATATTAATTTATTAATATTCCAAAAATTAATAAATAA-A-AATTTAAAAAATAAATATGTTTA
** * * * * *
24819040 CTGAACAAGTTCAAATAGTTATGACTATCTAAATAATTATTTATTTCAAAACA
126 CCAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAATCA
* * * *
24819093 TTATGACCATTTGTTTTGTCATAAAATAATTAGTTCTGTTCATGCAAGCTTATCTCG-AATAAAA
1 TTATGA-CTTTTGTTTTGTCAT-AAATAATTATTTCTATTCATACAAGCTTAT-TCGAAATAAAA
* * * * * ***
24819157 TAATATAAATTTATTAAAACTCCAAAAATTAACAAATAAAAATTTTAAAAATAAATATGTTTTTT
63 TAATATTAATTTATTAATATTCCAAAAATTAATAAATAAAAATTTAAAAAATAAATATGTTTACC
* * *
24819222 TAACACA-TTC-AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCG
128 AAACA-AGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAATCA
*
24819272 TTATGACAATTTGTTTTGTCATAAATCAATTATTTCTATTCATACAAGCTTATTCGAAATAAAAT
1 TTATGAC-TTTTGTTTTGTCATAAAT-AATTATTTCTATTCATACAAGCTTATTCGAAATAAAAT
* * * * * *
24819337 AATATTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGTTTAAATAATAAATTTGTTTACCA
64 AATATTAATTTATTAATATTCCAAAAATTAATAAATAAAAATTTAAAAAATAAATATGTTTACCA
* * *
24819402 AGCAAGTTCAAATAGTTATTACTATTTGAACAATTATATATTTCAAATCT
129 AACAAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAATCA
*
24819452 TTATGATCTTTTGTTTTGTCATAAAATAATTGTTTCATATT
1 TTATGA-CTTTTGTTTTGTCAT-AAATAATTATTTC-TATT
24819493 AAAATAATAA
Statistics
Matches: 476, Mismatches: 89, Indels: 34
0.79 0.15 0.06
Matches are distributed among these distances:
178 9 0.02
179 141 0.30
180 90 0.19
181 89 0.19
182 143 0.30
183 4 0.01
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (178 bp):
TTATGACTTTTGTTTTGTCATAAATAATTATTTCTATTCATACAAGCTTATTCGAAATAAAATAA
TATTAATTTATTAATATTCCAAAAATTAATAAATAAAAATTTAAAAAATAAATATGTTTACCAAA
CAAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAAATCA
Found at i:24819660 original size:16 final size:17
Alignment explanation
Indices: 24819639--24819676 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
24819629 AAAGGTAATA
24819639 AATTAGTATTATTA-TT
1 AATTAGTATTATTATTT
24819655 AATTAGTATTATTATTT
1 AATTAGTATTATTATTT
24819672 AATTA
1 AATTA
24819677 TTAATTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
AATTAGTATTATTATTT
Found at i:24821776 original size:16 final size:18
Alignment explanation
Indices: 24821744--24821778 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
24821734 TTAATTTGTA
24821744 TACAATTATAGATATTAT
1 TACAATTATAGATATTAT
24821762 TACAA-TATA-ATATTAT
1 TACAATTATAGATATTAT
24821778 T
1 T
24821779 GTAAATTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 4 0.24
18 5 0.29
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.46
Consensus pattern (18 bp):
TACAATTATAGATATTAT
Found at i:24822290 original size:18 final size:18
Alignment explanation
Indices: 24822249--24822290 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
24822239 TAATAATTCA
24822249 ATATTAATTAAAAAATTT
1 ATATTAATTAAAAAATTT
* *
24822267 AAATTAATTATAAGAA-TT
1 ATATTAATTA-AAAAATTT
24822285 ATATTA
1 ATATTA
24822291 GGTTATAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (18 bp):
ATATTAATTAAAAAATTT
Found at i:24822366 original size:19 final size:19
Alignment explanation
Indices: 24822315--24822373 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
24822305 ATATTATAAT
*
24822315 TTAAT-TAATAGATATATTA
1 TTAATATAATATA-ATATTA
24822334 -TAA-ATAATTATAATATTA
1 TTAATATAA-TATAATATTA
*
24822352 TTAATATAATATAATAGTA
1 TTAATATAATATAATATTA
24822371 TTA
1 TTA
24822374 TATTTATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
18 12 0.35
19 18 0.53
20 4 0.12
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
TTAATATAATATAATATTA
Found at i:24822384 original size:30 final size:30
Alignment explanation
Indices: 24822337--24822406 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 30
24822327 TATATTATAA
*
24822337 ATAATTATA-ATATTATTAATATAATATA-AT
1 ATAATTATATTTA-TATTAATATAA-ATAGAT
24822367 AGT-ATTATATTTATATTAATATAAATAGAT
1 A-TAATTATATTTATATTAATATAAATAGAT
24822397 ATAATTATAT
1 ATAATTATAT
24822407 AATCAATATA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
29 4 0.11
30 28 0.80
31 3 0.09
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (30 bp):
ATAATTATATTTATATTAATATAAATAGAT
Found at i:24822486 original size:5 final size:5
Alignment explanation
Indices: 24822476--24822532 Score: 52
Period size: 5 Copynumber: 11.8 Consensus size: 5
24822466 TAATATTTTA
24822476 TATAT TATAT TATAT TATA- TATAT TA-AT T-TAAT T-TAAT TA-AT ATATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TAT-AT TAT-AT TATAT -TATAT
24822524 TATAT TATA
1 TATAT TATA
24822533 ATAATTATTA
Statistics
Matches: 46, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
4 9 0.20
5 35 0.76
6 2 0.04
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (5 bp):
TATAT
Found at i:24822498 original size:14 final size:14
Alignment explanation
Indices: 24822468--24822532 Score: 63
Period size: 14 Copynumber: 5.1 Consensus size: 14
24822458 TAATTAGTTA
*
24822468 ATATTTTATA-TAT
1 ATATATTATATTAT
24822481 -TATATTATATTAT
1 ATATATTATATTAT
24822494 ATATATTA-ATT-T
1 ATATATTATATTAT
24822506 A-AT-TTA-ATTAAT
1 ATATATTATATT-AT
24822518 ATATATTATATTAT
1 ATATATTATATTAT
24822532 A
1 A
24822533 ATAATTATTA
Statistics
Matches: 44, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
10 6 0.14
11 2 0.05
12 12 0.27
13 8 0.18
14 13 0.30
15 3 0.07
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATATATTATATTAT
Found at i:24822537 original size:24 final size:24
Alignment explanation
Indices: 24822476--24822539 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 24
24822466 TAATATTTTA
*
24822476 TATATTATATTATATT-ATATATAT
1 TATATTATAATA-ATTAATATATAT
24822500 TA-ATT-TAATTTAATTAATATATAT
1 TATATTATAA--TAATTAATATATAT
24822524 TATATTATAATAATTA
1 TATATTATAATAATTA
24822540 TTATTTTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
22 2 0.06
23 6 0.18
24 20 0.59
25 3 0.09
26 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (24 bp):
TATATTATAATAATTAATATATAT
Found at i:24824040 original size:26 final size:26
Alignment explanation
Indices: 24824011--24824063 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24824001 TTGGTCCGAT
24824011 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
24824037 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
24824063 C
1 C
24824064 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:24824679 original size:329 final size:329
Alignment explanation
Indices: 24824124--24824737 Score: 762
Period size: 329 Copynumber: 1.9 Consensus size: 329
24824114 CCATTCGGAT
* * * *
24824124 AGGCATAATGCGCAAGTCGGGGATAAACCCGATCCCCCTCTGCATGTTGTCGATCCCGCTGCCGG
1 AGGCATAATGCGCAAGCCCGGGATAAACCCGATCCCCCTCTGCATGCTGTCGATACCGCTGCCGG
* * * ** * **
24824189 TCTTGTTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACGTGTAATGTACTCTGTATGCCTAAGC
66 TCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACGTGGAATGTACTCCATATGCCTAAGC
* * * * *
24824254 CAACCCATGAAACGAGTGTATGGGCGCTCAGCCGGTCGGTGAGGTAGAATGCGCAAGCCGAGGAT
131 CAACCCACGAAACGAGTGTACGGGCGCTCAGCCGGACGGAGAGGCAGAATGCGCAAGCCGAGGAT
* * ** * **
24824319 TGGTCCGATCCCCCCTACATGCTACCGATCCTGCTACTGCAACCCTCGATCTAATCTGATCTTAG
196 CGGTCCGATCCCCCCTACATGCTACCGATCCTACTACCACAACCCTCAATCTAATCCAATCTTAG
*
24824384 ACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACAAGTGTGCGGGCACTCAGCCGACT
261 ACTGGGAATGAACTCCATATGCTTAAGTCAACCCACGAAACAAGTGTGCGGGCACTCAGCCGACT
24824449 GGAG
326 GGAG
* * * * ** * *
24824453 AGGCATAATGCGTAAGCCCGGGATCAGCCCTATCCCCCTCTGTGTGCTGTTGATACCGCTGTCGG
1 AGGCATAATGCGCAAGCCCGGGATAAACCCGATCCCCCTCTGCATGCTGTCGATACCGCTGCCGG
* * *
24824518 TCCTGCTACCACAACCCTCAGTCTGGTTGGGTCTTAGACGTGGAATGTACTCCATATGCCTAAGC
66 TCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACGTGGAATGTACTCCATATGCCTAAGC
* * * *
24824583 CAACCCACGAAATGAGTGTGCGGGTGCTCAGCCGGACGGAGAGGCAGAATGCGCAAGCCGGGGAT
131 CAACCCACGAAACGAGTGTACGGGCGCTCAGCCGGACGGAGAGGCAGAATGCGCAAGCCGAGGAT
* * * ** * * * **
24824648 CGG-CCTGGTCCCCCTTACGTGCTGTCGATCCTACTGCCACGACCTTCAATCTGGTCCAATCTTA
196 CGGTCC-GATCCCCCCTACATGCTACCGATCCTACTACCACAACCCTCAATCTAATCCAATCTTA
24824712 GACTGGGAATGAACTCCATATGCTTA
260 GACTGGGAATGAACTCCATATGCTTA
24824738 GACTGGGAAT
Statistics
Matches: 234, Mismatches: 50, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
328 2 0.01
329 232 0.99
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (329 bp):
AGGCATAATGCGCAAGCCCGGGATAAACCCGATCCCCCTCTGCATGCTGTCGATACCGCTGCCGG
TCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACGTGGAATGTACTCCATATGCCTAAGC
CAACCCACGAAACGAGTGTACGGGCGCTCAGCCGGACGGAGAGGCAGAATGCGCAAGCCGAGGAT
CGGTCCGATCCCCCCTACATGCTACCGATCCTACTACCACAACCCTCAATCTAATCCAATCTTAG
ACTGGGAATGAACTCCATATGCTTAAGTCAACCCACGAAACAAGTGTGCGGGCACTCAGCCGACT
GGAG
Found at i:24824737 original size:26 final size:26
Alignment explanation
Indices: 24824708--24824768 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
24824698 CTGGTCCAAT
*
24824708 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
24824734 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
24824760 CTTAGACTG
1 CTTAGACTG
24824769 CCGATCCTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:24825472 original size:158 final size:158
Alignment explanation
Indices: 24825184--24825526 Score: 379
Period size: 158 Copynumber: 2.2 Consensus size: 158
24825174 GCTCCGTATG
* * *
24825184 CTTAGACAT-GGAATGAAC-TCTGTATGCCTAAGCCAACCCACGAAACAAATGTGCGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTTC-ATATGCATAAGCCAACCCACGAAACAAACGTGCGGGCGCTCA
** * *
24825247 ACCAGTCGGAGACACAGAATGCGCAAGCCGAGGATCGACCCAATCCCCAATGCGTGCTGCTGATC
64 ACCAGTCAAAGACACAGAATGAGCAAGCCGAGGATCGACCCAATCCCCAATACGTGCTGCTGATC
* *
24825312 CTGCTGCCACAACCCTCAGTCCGGTCCGAT
129 CTGCTGCCACAACCCTCAGTCCGGTCAGAC
* * * * *
24825342 CTTAGACTGGGAATGAACTTCATATGCATAAGTCAACCCACGAAATAAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTTCATATGCATAAGCCAACCCACGAAACAAACGTGCGGGCGCTCAAC
* ** * * ** *
24825407 CGGTCAAAGAGGCATAATGAGCAAGCCGAGGCTCGACCCGGTCCCTC-CTACGTGCTG-TCGATC
66 CAGTCAAAGACACAGAATGAGCAAGCCGAGGATCGACCCAATCCC-CAATACGTGCTGCT-GATC
* * * *
24825470 CTGCTGTCGCAACCCTCGGTCTGGTCAGAC
129 CTGCTGCCACAACCCTCAGTCCGGTCAGAC
*
24825500 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTTCATATGC
24825527 TTAGACTGGG
Statistics
Matches: 154, Mismatches: 27, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
157 2 0.01
158 149 0.97
159 3 0.02
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTTCATATGCATAAGCCAACCCACGAAACAAACGTGCGGGCGCTCAAC
CAGTCAAAGACACAGAATGAGCAAGCCGAGGATCGACCCAATCCCCAATACGTGCTGCTGATCCT
GCTGCCACAACCCTCAGTCCGGTCAGAC
Found at i:24826580 original size:159 final size:158
Alignment explanation
Indices: 24826210--24826655 Score: 371
Period size: 159 Copynumber: 2.8 Consensus size: 158
24826200 AGCTTCGTAT
* * * * *
24826210 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAG
* * * *
24826275 TCGGCTAGAGAGGTAGAATGCACAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
66 CCGGCGAGAGAGGCAGAATGCACAAGTCGGGGATCAACCCGATCCCCCCTACGTGCTGTCGATCC
* *
24826340 TGCTACCGCAACCCTCAGTCTGGTCTGA
131 GGCTACCACAACCCTCAGTCTGGTCTGA
* ** * * * ** *
24826368 TCTTAG-GTTGGGAATGAACTCCGTAAGCATAAGTCAACCCACGAAACAAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCA
* * * * * * *
24826432 GCCGGTCGA-AGAGGCATAATGCGCATGTCGGGGATCAACCTGGTCCTCCTCTGCGTGCTGTCGA
65 GCCGG-CGAGAGAGGCAGAATGCACAAGTCGGGGATCAACCCGATCC-CCCCTACGTGCTGTCGA
* * *
24826496 TCCGGCTGCCACAACCCTCGATTC-GG-CTGGG
128 TCCGGCTACCACAACCCTC-AGTCTGGTCT-GA
* * * * ** *
24826527 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGGCAACCCACGAAATGGGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAG
* * * * * ** * * * *
24826592 CCGG-TAGGAGAGGTAGAATGCGCAAGCCTGGGATCGGCCCGATCCCTCTTGCATGCTGTCGATC
66 CCGGCGA-GAGAGGCAGAATGCACAAGTCGGGGATCAACCCGATCCCCCCTACGTGCTGTCGATC
24826656 TTGCTGTCGC
Statistics
Matches: 221, Mismatches: 59, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
157 2 0.01
158 99 0.45
159 116 0.52
160 4 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAG
CCGGCGAGAGAGGCAGAATGCACAAGTCGGGGATCAACCCGATCCCCCCTACGTGCTGTCGATCC
GGCTACCACAACCCTCAGTCTGGTCTGA
Found at i:24826722 original size:26 final size:26
Alignment explanation
Indices: 24826686--24826738 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24826676 ACGGTCTGAT
*
24826686 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24826712 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24826738 C
1 C
24826739 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24827094 original size:26 final size:26
Alignment explanation
Indices: 24827053--24827104 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24827043 CCAGTTCAAT
24827053 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
24827079 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCCTATG
24827105 TTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:24827275 original size:367 final size:367
Alignment explanation
Indices: 24826501--24827449 Score: 1137
Period size: 367 Copynumber: 2.6 Consensus size: 367
24826491 GTCGATCCGG
* * * *
24826501 CTGCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGGCAAC
1 CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAAC
* * ** * *
24826565 CCACGAAATGGGCGTACGGGTGCTCAACCGGTAGGAGAGGTAGAATGCGCAAGCCT-GGGATCGG
65 CCACGAAATGAGCGTGCGGGCACTCAACCGATCGGAGAGGTAGAATGCGCAAG-CTGGGGATCGG
* * * * *
24826629 CCCGATCCCTCTTGCATGCTGTCGATCTTGCTGTCGCAACCCTTGATACGGTCTGATCTTAGACT
129 CCCGATCCCTCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGTTC-GATCTTAGACT
* * *
24826694 GGGAATGAACTCCTTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
193 GGGAATGAACTCCTTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACA
* ** * * * *
24826759 AGCGTGCGGGCGCTCAGTCGGCCAGAGAGGCCAGCCGGAGAATCATAATGCGTAAGCCAGGGATC
258 AGCATGCGGGCGCTCAACCGACCAGAGAGGCCAGCCGAAGAAGCATAATGCGCAAGCCAGGGATC
* *
24826824 AGCCCGGTCCCCCTCTACGTGCTACCGATCCCACTGTCGGTCCTG
323 AGCCCAGTCCCCCTCTACGTGCTACCGATCCCACTGTCGGTCCTA
* * * * *
24826869 CTACCACAACCCTTGATCCGACTGTGG-TTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
* * * *
24826933 CACGAAACGAGCGTGCGAGCACTCAGCCGATCGGAGAGGTAGAAT-CTGCAAGCTGGGGATCGAC
66 CACGAAATGAGCGTGCGGGCACTCAACCGATCGGAGAGGTAGAATGC-GCAAGCTGGGGATCGGC
** * *
24826997 CCGATCCCTCCTGCATGCTGTCGATCCTGCTACCACAA-CCTCCGATCCAGTTCAATCTTAGACT
130 CCGATCCCTCCTGCATGCTGTCGATCCTGCTGTCGCAACCCT-CGATCC-GTTCGATCTTAGACT
* *
24827061 GGGAATGAACTCCCTATGCTTAGACTAGGGATGAACTCCGTATG-TTAAGTCAACCCAAGAAACA
193 GGGAATGAACTCCTTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACA
* * * * *
24827125 AGCATGCGGGCGCTCAACCGACCGGAGAGGCCAGCTGAAGAGGCCTAATGTGCAAGCC-GGGCAT
258 AGCATGCGGGCGCTCAACCGACCAGAGAGGCCAGCCGAAGAAGCATAATGCGCAAGCCAGGG-AT
* * * * *
24827189 CAGCCCAGTCCCCCTTTGCGTGCTGCTGATCCCGCTG-CTGGTCCTA
322 CAGCCCAGTCCCCCTCTACGTGCTACCGATCCCACTGTC-GGTCCTA
*
24827235 CTGCCACAACCCTC-AGTCCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCTAAC
1 CTGCCACAACCCTCGA-TCCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
* * *
24827299 CCACGAAATGAGCTTGCGGGCACTCAACCAATCGGAGAGGCAGAATGCGCAAG-TCGGGGATCGG
65 CCACGAAATGAGCGTGCGGGCACTCAACCGATCGGAGAGGTAGAATGCGCAAGCT-GGGGATCGG
* * * * * * *
24827363 TCCGGT-CCTCCCTGCGTGCTGTCAATCCTACTGTCGCAACCCTCGGTCCGGTTCGATCTTAGAT
129 CCCGATCCCT-CCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGATCC-GTTCGATCTTAGAC
*
24827427 TGGGAATGAACTCTTTATGCTTA
192 TGGGAATGAACTCCTTATGCTTA
24827450 TGCCTAAGTC
Statistics
Matches: 489, Mismatches: 79, Indels: 27
0.82 0.13 0.05
Matches are distributed among these distances:
365 5 0.01
366 133 0.27
367 321 0.66
368 30 0.06
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (367 bp):
CTGCCACAACCCTCGATCCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
CACGAAATGAGCGTGCGGGCACTCAACCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCC
CGATCCCTCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGTTCGATCTTAGACTGGG
AATGAACTCCTTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACAAGC
ATGCGGGCGCTCAACCGACCAGAGAGGCCAGCCGAAGAAGCATAATGCGCAAGCCAGGGATCAGC
CCAGTCCCCCTCTACGTGCTACCGATCCCACTGTCGGTCCTA
Found at i:24828005 original size:26 final size:26
Alignment explanation
Indices: 24827976--24828028 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24827966 CCGATCTGAT
24827976 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
24828002 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24828028 C
1 C
24828029 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24828387 original size:26 final size:26
Alignment explanation
Indices: 24828343--24828395 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24828333 CCGATCCGAT
* *
24828343 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
**
24828369 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
24828395 C
1 C
24828396 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCCGTATG
Found at i:24828555 original size:25 final size:25
Alignment explanation
Indices: 24828504--24828558 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
24828494 CATCTTCATA
* ** *
24828504 TTTATTTTTCACGTTTTCACGATTT
1 TTTATTTTTCACGATTTCAAAACTT
24828529 TTTATTTTTCACGATTTCAAAACTT
1 TTTATTTTTCACGATTTCAAAACTT
24828554 TTTAT
1 TTTAT
24828559 GGTTCGGGAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.22, C:0.15, G:0.05, T:0.58
Consensus pattern (25 bp):
TTTATTTTTCACGATTTCAAAACTT
Found at i:24829026 original size:26 final size:26
Alignment explanation
Indices: 24828997--24829047 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
24828987 GCTCAAAATC
*
24828997 TTAGAT-TGGGAATGAGCTCCATATGT
1 TTAGATAT-GGAATGAACTCCATATGT
*
24829023 TTAGATATGGAATGAACTCCGTATG
1 TTAGATATGGAATGAACTCCATATG
24829048 CCTTAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (26 bp):
TTAGATATGGAATGAACTCCATATGT
Found at i:24829178 original size:26 final size:26
Alignment explanation
Indices: 24829142--24829194 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24829132 TCGATCTGAT
*
24829142 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
24829168 CTTAGACTGGGGATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
24829194 C
1 C
24829195 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:24829514 original size:26 final size:26
Alignment explanation
Indices: 24829485--24829537 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24829475 CCGGTTCGAT
*
24829485 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCATATG
24829511 CTTAGACTGAGGATGAACTCCATATG
1 CTTAGACTGAGGATGAACTCCATATG
24829537 C
1 C
24829538 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCATATG
Found at i:24829881 original size:26 final size:26
Alignment explanation
Indices: 24829852--24829904 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24829842 CCGATCTGAT
*
24829852 CTTAGAC-TGAGAATGAACTCTGTATG
1 CTTAGACTTG-GAATGAACTCCGTATG
*
24829878 CTTAGACTTGGGATGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCGTATG
24829904 C
1 C
24829905 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCGTATG
Found at i:24831737 original size:26 final size:26
Alignment explanation
Indices: 24831708--24831761 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
24831698 GGTCCGATCT
24831708 TAGAATGGGAATGAACTCCGTATGCC
1 TAGAATGGGAATGAACTCCGTATGCC
* *
24831734 TAGACTGGGGATGAACTCCGTATGCC
1 TAGAATGGGAATGAACTCCGTATGCC
24831760 TA
1 TA
24831762 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
TAGAATGGGAATGAACTCCGTATGCC
Found at i:24832789 original size:159 final size:159
Alignment explanation
Indices: 24832455--24832855 Score: 360
Period size: 159 Copynumber: 2.5 Consensus size: 159
24832445 AGCTCTGTAT
* * * *
24832455 GCTTAGACAAGGAATGAACTCCGTATGCTTAAGCCAAACCATGAAATGAGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAAACCACGAAACGAGCGTGCAGGCACTCAG
* * * * * *
24832520 CCGGCTGGAGAGGCAAAATGCACGAGCCGGGGATCGACCCGATCCCCCCCTACGTGCTGTCGATA
66 CCGGCCGAAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCCCCTACATGCTGCCAATA
* *
24832585 CTGCTACCGCAACCCTTGGTCCGGTCTGA
131 CTGCTACCACAACCCTCGGTCCGGTCTGA
* * * * * * *** *
24832614 TCTTAGA-TTGGAAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGTGTGCAGGTGTTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCATAAGCCAAACCACGAAACGAGCGTGCAGGCACTCA
* * * * *
24832678 GTCGGCCGAAGATGCATAATGCACAAGCCGGGGATCGGA-CCGATCCCCCTCTGCATGCTGCCAA
65 GCCGGCCGAAGAGGCAAAATGCACAAGCCGGGGATC-GACCCGATCCCCCCCTACATGCTGCCAA
* * *
24832742 T-TTCGCTGCCACAACCCTCGGTCCGGT-TGGG
129 TACT-GCTACCACAACCCTCGGTCCGGTCT-GA
* * * * * * * * *
24832773 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAAGCTATGAAACGGGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAAACCACGAAACGAGCGTGCAGGCACTCAG
** *
24832838 CCGGTTGGAGAGGCAAAA
66 CCGGCCGAAGAGGCAAAA
24832856 GCGTAAACCA
Statistics
Matches: 185, Mismatches: 52, Indels: 10
0.75 0.21 0.04
Matches are distributed among these distances:
158 4 0.02
159 176 0.95
160 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAAACCACGAAACGAGCGTGCAGGCACTCAG
CCGGCCGAAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCCCCTACATGCTGCCAATA
CTGCTACCACAACCCTCGGTCCGGTCTGA
Found at i:24832967 original size:26 final size:26
Alignment explanation
Indices: 24832931--24832983 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24832921 CTGATCTGAT
*
24832931 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
24832957 CTTAGATTGGGCATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24832983 C
1 C
24832984 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24833669 original size:26 final size:26
Alignment explanation
Indices: 24833628--24833680 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24833618 CTGATCCGAT
*
24833628 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCATATG
* *
24833654 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGAGAATGAACTTCATATG
24833680 C
1 C
24833681 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCATATG
Found at i:24833872 original size:356 final size:347
Alignment explanation
Indices: 24832910--24834442 Score: 1229
Period size: 356 Copynumber: 4.3 Consensus size: 347
24832900 CCTGCTGCTG
* * * *
24832910 CAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGCATGAAC
1 CAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAAC
* * * * ** * *
24832975 TCCGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCGCTCAG-CTGGCCGAAGAGGCATAA
66 TTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCCGATCGGAGAAGCATAA
* * * * * * * * *
24833039 TATGCAAGCC-AAGCATCAGCCCGATCCCCCAT-TGCATGCTATCGATCCCGCTGTCGGTCTTGC
131 TGTGCAAGCCGAAG-ATCAACCCGATCCCCC-TCTGCGTGCTGTCGATCCCACTATCGATCCTAC
** * ** **
24833102 TGCCACAACCCTCGGTTCGGCTAGGGCTTAGACGTGGAATGTACTCCGTATAACTAAGCCAACCC
194 TGCCACAACCCTCAATCCGGCTAAAGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCC
* * * * * * *** ** *
24833167 ATGAAACGAGAGTGCGGGCACTCAGTCAACCGGAGAGGCAGAATGCGCAAATTGGGGATCGATCT
259 ACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCC
* * *
24833232 GGTCCCCCCTACGTGCTACCGATCCTATGGCCG
324 GAT-CCCCCT-CGTGCT---G-TGCTA---CCA
* * * * ** * *
24833265 TAACCCTCGATCCGATCCT-ATCTTAAACTAAGAATGATCTCCGTATGCTTAGACTGGGGATGAA
1 CAACCCTCGATCTGGT-CTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAA
* * * * *
24833329 C-TCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAG-CCGGTC-GAGAGGCAT
65 CTTC-GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCCGATCGGAGAAGCAT
* * ** * * * ** ** * *
24833391 AATGCGCAAGCC-AGGGATCTGCCCGGTCCCCCTCTACGTGCTGTAGATCCCGTTGCCGGTCCTG
129 AATGTGCAAGCCGA-AGATCAACCCGATCCCCCTCTGCGTGCTGTCGATCCCACTATCGATCCTA
* ** * * *** * * * **
24833455 CTGCCACAACCTTCGGTTCGGTTGGGGTTTAGATGTGGAATGTACTTCGTATGCCTAAGCCAATA
193 CTGCCACAACCCTCAATCCGGCTAAAGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
* * * * *
24833520 TACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCC
258 CACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCC
24833585 CGATCCCCC-C-TG-TGTGCTACCA
323 CGATCCCCCTCGTGCTGTGCTACCA
* * * *
24833607 TAACCCTCGATCTGATCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGGGGATGAAC
1 CAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAAC
* *
24833672 TTCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAACCGAAGAGGTCGACT
66 TTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG-C--CC---GA--T---C-
** * * * *
24833737 GGAGAAGCATAATGTGCAAGCCGGGGATTAACTCGATCCTCCTCTGTGTGCTGTCGATCCCACTA
119 GGAGAAGCATAATGTGCAAGCCGAAGATCAACCCGATCCCCCTCTGCGTGCTGTCGATCCCACTA
* **
24833802 TCGATCTTACTGCCACAACCCTCGGTCCGGCTAAAGCTTAGACGTGGAATGTACTCCGTATGCCT
184 TCGATCCTACTGCCACAACCCTCAATCCGGCTAAAGCTTAGACGTGGAATGTACTCCGTATGCCT
* * * * * * *
24833867 AAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGACCGAAAAAGTAGAATGCGTAAGCCGG
249 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGG
* * *
24833932 GGATCGGCCCGGTCCCTCCTACGTGCTATCGATCCTGCTGCCG
314 GGATCGGCCCGATCCC-CCT-CGTGC--T-G----TGCTACCA
* *
24833975 CAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAAC
1 CAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAAC
* * ** * *
24834040 TCCGTATTCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG-TCGATCGGAGAGGCATAA
66 TTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCCGATCGGAGAAGCATAA
* * * * * * *
24834104 TGTGTAAGTCGAAGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTATCGGTCCTGCTG
131 TGTGCAAGCCGAAGATCAACCCGATCCCCCTCTGCGTGCTGTCGATCCCACTATCGATCCTACTG
* * * * *** *
24834169 GCACCACCCTCAATTCGGTTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCCAC
196 CCACAACCCTCAATCCGGCTAAAGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
* * * * * * *
24834234 GAAACGAGCGTGCGGGCGTTCAGCTGACCAGAGAGGCAGAATGCGTATGCCGAGGATCGACCCAA
261 GAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGA
24834299 TCCCCCCTGCGGTGCTGTCGATCCTACTGCCA
326 T-CCCCCT-C-GTGCTGT-G---CTA---CCA
* * * **
24834331 CAACCCTCGATCCGGTGTGATCTTAGACTGGGAATGAGCTTCGTATGCTTAGACTGGAAATGAAC
1 CAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAAC
*
24834396 -TCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
66 TTC-GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
24834443 TGTCCGGAGG
Statistics
Matches: 952, Mismatches: 182, Indels: 86
0.78 0.15 0.07
Matches are distributed among these distances:
341 1 0.00
342 97 0.10
343 2 0.00
345 4 0.00
346 3 0.00
349 3 0.00
350 3 0.00
351 2 0.00
353 9 0.01
354 169 0.18
355 268 0.28
356 275 0.29
357 2 0.00
359 2 0.00
360 2 0.00
361 2 0.00
363 1 0.00
364 2 0.00
368 105 0.11
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (347 bp):
CAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAAC
TTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCCGATCGGAGAAGCATAA
TGTGCAAGCCGAAGATCAACCCGATCCCCCTCTGCGTGCTGTCGATCCCACTATCGATCCTACTG
CCACAACCCTCAATCCGGCTAAAGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGA
TCCCCCTCGTGCTGTGCTACCA
Found at i:24834032 original size:26 final size:26
Alignment explanation
Indices: 24833996--24834046 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24833986 CTGGTCTGAT
*
24833996 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
24834022 CTTAGACTGGGGATAAACTCCGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
24834047 TCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:24834402 original size:26 final size:26
Alignment explanation
Indices: 24834352--24834404 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24834342 CCGGTGTGAT
* *
24834352 CTTAGACTGGGAATGAGCTTCGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
24834378 CTTAGACTGGAAATGAAC-TCTGTATG
1 CTTAGACTGGAAATGAACTTC-GTATG
24834404 C
1 C
24834405 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTTCGTATG
Found at i:24834503 original size:710 final size:707
Alignment explanation
Indices: 24832746--24834506 Score: 1863
Period size: 710 Copynumber: 2.5 Consensus size: 707
24832736 TGCCAATTTC
** * * **
24832746 GCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAA
1 GCTGCCACAACCCTCAATTCGGTTGGGGCTTAGACGTGGAATGTA-CTCTGTATGCCTAAGCCAA
* * * * * * * * * *
24832810 GCTATGAAACGGGTGTGCGGGCACTCAGCCGGTTGGAGAGGCA-AAAGCGTAAACCAAGGATCGA
65 CCTACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGA
* * * ** * ** *
24832874 CCCGGTCTCCCCTGTGTGCTACCGATCCTGCTGCTGCAACCCTCGGTCTGATCTGATCTTAGACT
130 CCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGATCTGATCTGATCTTAGACT
* * *
24832939 GGGAATGAACTTCGTATGCTTAGATTGGGCATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
195 GGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACG
* * * * * *** ** * * *
24833004 AGTGTACGGGCGCTCAGCTGGCCGAAGAGGCATAATATGCAAGCCAAGCATCAGCCCGATCCCCC
260 AGCGTACGGGCGCTCAGCTGACCGGAGGGGCAGAATGCACAAGCCGGGGATCAGACCGATCCCTC
* * * * * * * **
24833069 ATTGCATGCTATCGATCCCGCTGTCGGTCTTGCTGCCACAACCCTCGGTTCGGCTAGGGCTTAGA
325 --TGCGTGCTGTCGATCCCACTATCGATCTTACTGCCACAACCCTCGGTCCGGCTAAAGCTTAGA
*
24833134 CGTGGAATGTACTCCGTATAACTAAGCCAACCCATGAAACGAGAGTGCGGGCACTCAGTCAACCG
388 CGTGGAATGTACTCCGTATAACTAAGCCAACCCATGAAACGAGAGTGCGGGCACTCAGCCAACCG
* * * ** * *
24833199 GAGAGGCAGAATGCGCAAATTGGGGATCGATCTGGTCCCCCCTACGTGCTACCGATCCTATGGCC
453 AAAAAGCAGAATGCGCAAACCGGGGATCGACCCGGTCCCCCCTACGTGCTACCGATCCTATGGCC
* * *
24833264 GTAACCCTCGATCCGATCCTATCTTAAACTAAGAATGATCTCCGTATGCTTAGACTGGGGATGAA
518 GCAACCCTCGATCCGATCCTATCTTAAACTAAGAATGAACTCCGTATGCTTAGACTGGGGATAAA
* * *
24833329 CTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGCCGGTCGAGAGGCATAAT
583 CTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCACTCAGCCGATCGAGAGGCATAAT
* * * *
24833394 GCGCAAGCCAGGGATCTGCCCGGTCCCCCTCTACGTGCTGTAGATCCCGTTGCCGGTCCT
648 GCGCAAGCCAGAGATCAGCCCGGTCCCCCTCTACGTGCTGTAGATCCCGCTACCGGTCCT
* ** * *
24833454 GCTGCCACAACCTTCGGTTCGGTTGGGGTTTAGATGTGGAATGTACT-TCGTATGCCTAAGCCAA
1 GCTGCCACAACCCTCAATTCGGTTGGGGCTTAGACGTGGAATGTACTCT-GTATGCCTAAGCCAA
** * * * * *
24833518 TATACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGG
65 CCTACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGA
* *
24833583 CCCGAT-CCCCC--C-TG-TGT-G---CTA---CCATAACCCTCGATCTGATCCGATCTTAGACT
130 CCCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGATCTGATCTGATCTTAGACT
* * *
24833636 GAGAATGAACTTCGTATGCTTAGACTGGGGATGAACT-TCATATGCCTAAGTCAACCCATGAAAC
195 GGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCATGAAAC
* * ** *
24833700 GAGCGTGCGGGTGCTCAGCCAACCGAAGAGGTCGACTGGAGAA-GCATAATGTGCAAGCCGGGGA
259 GAGCGTACGGGCGCTCAGCTGACCG--GAGG--G---GCAGAATGC---A----CAAGCCGGGGA
* *
24833764 TTA-ACTCGATCCTCCTCTGTGTGCTGTCGATCCCACTATCGATCTTACTGCCACAACCCTCGGT
310 TCAGAC-CGAT-C-CCTCTGCGTGCTGTCGATCCCACTATCGATCTTACTGCCACAACCCTCGGT
** * *
24833828 CCGGCTAAAGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCG
372 CCGGCTAAAGCTTAGACGTGGAATGTACTCCGTATAACTAAGCCAACCCATGAAACGAGAGTGCG
** * * * * * *
24833893 GGTGCTCAGCCGACCGAAAAAGTAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCTCCTACGTGC
437 GGCACTCAGCCAACCGAAAAAGCAGAATGCGCAAACCGGGGATCGACCCGGTCCCCCCTACGTGC
* * * * * **
24833958 TATCGATCCTGCT-GCCGCAACCCTCGATCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTAT
502 TACCGATCCT-ATGGCCGCAACCCTCGATCCGATCCT-ATCTTAAACTAAGAATGAACTCCGTAT
* * *
24834021 GCTTAGACTGGGGATAAACTCCGTATTCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG
565 GCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCACTCAG
* * * * * *
24834086 TCGATCGGAGAGGCATAATGTGTAAGTC-GAAGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGAT
630 CCGATC-GAGAGGCATAATGCGCAAGCCAG-AGATCAGCCCGGTCCCCCTCTACGTGCTGTAGAT
*
24834150 CCCGCTATCGGTCCT
693 CCCGCTACCGGTCCT
* *
24834165 GCTGGCACCACCCTCAATTCGGTTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCAATTCGGTTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAAC
* * * * * *
24834230 CCACGAAACGAGCGTGCGGGCGTTCAGCTGACCAGAGAGGCAGAATGCGTATGCCGAGGATCGAC
66 CTACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGAC
* * * *
24834295 CCAATCCCCCCTGCGGTGCTGTCGATCCTACTGCCACAACCCTCGATCCGGTGTGATCTTAGACT
131 CCGATCCCCCCTGC-GTGCTGTCGATCCTACTGCCACAACCCTCGATCTGATCTGATCTTAGACT
* *
24834360 GGGAATGAGCTTCGTATGCTTAGACTGGAAATGAACTCTGTATGCCTAAGTCAACCCATGAAACG
195 GGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACG
* * * *
24834425 AGCGTACGGGCGCTCAGCTGTCCGGAGGGGTAGAATGCACAAGTCGGGGATCAGTCCGATCCACT
260 AGCGTACGGGCGCTCAGCTGACCGGAGGGGCAGAATGCACAAGCCGGGGATCAGACCGATCC-CT
*
24834490 CTGCGTACTGTCGATCC
324 CTGCGTGCTGTCGATCC
24834507 TGCTGCGGCA
Statistics
Matches: 853, Mismatches: 157, Indels: 84
0.78 0.14 0.08
Matches are distributed among these distances:
697 104 0.12
699 2 0.00
700 2 0.00
701 1 0.00
703 1 0.00
704 5 0.01
705 2 0.00
708 92 0.11
709 24 0.03
710 292 0.34
711 190 0.22
712 10 0.01
714 1 0.00
715 1 0.00
716 2 0.00
717 8 0.01
718 3 0.00
720 1 0.00
721 3 0.00
722 4 0.00
724 104 0.12
725 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (707 bp):
GCTGCCACAACCCTCAATTCGGTTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAAC
CTACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGAC
CCGATCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGATCTGATCTGATCTTAGACTG
GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGA
GCGTACGGGCGCTCAGCTGACCGGAGGGGCAGAATGCACAAGCCGGGGATCAGACCGATCCCTCT
GCGTGCTGTCGATCCCACTATCGATCTTACTGCCACAACCCTCGGTCCGGCTAAAGCTTAGACGT
GGAATGTACTCCGTATAACTAAGCCAACCCATGAAACGAGAGTGCGGGCACTCAGCCAACCGAAA
AAGCAGAATGCGCAAACCGGGGATCGACCCGGTCCCCCCTACGTGCTACCGATCCTATGGCCGCA
ACCCTCGATCCGATCCTATCTTAAACTAAGAATGAACTCCGTATGCTTAGACTGGGGATAAACTC
CGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCACTCAGCCGATCGAGAGGCATAATGCG
CAAGCCAGAGATCAGCCCGGTCCCCCTCTACGTGCTGTAGATCCCGCTACCGGTCCT
Found at i:24834504 original size:355 final size:354
Alignment explanation
Indices: 24832746--24834506 Score: 1685
Period size: 355 Copynumber: 5.0 Consensus size: 354
24832736 TGCCAATTTC
* * *
24832746 GCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAA
1 GCTGCCACAACCCTCGGTTCGGTTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAA
* * * * * *** * * **
24832810 GCTATGAAACGGGTGTGCGGGCACTCAGCCGGTTGGAGAGGCA-AAAGCGTAAACCAAGGATCGA
65 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGA
* ** * * * *
24832874 CCCGGTCTCCCCTGTGTGCTACCGATCCTGCTGCTGCAACCCTCGGTCTGATCTGATCTTAGACT
130 CCCGGTCCCCCCTACGTGCTATCGATCCTACTGCCGCAACCCTCGATCTGATCTGATCTTAGACT
* * *
24832939 GGGAATGAACTTCGTATGCTTAGATTGGGCATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
195 GGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACG
* * * * ** ** *
24833004 AGTGTACGGGCGCTCAGCTGGCCGAAGAGGCATAATATGCAAGCCAAGCATCAGCCCGATCCCC-
260 AGCGTGCGGGCGCTCAGCTGTCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCT
* * * *
24833068 CATTGCATGCTATCGATCCCGCTGTCGGTCTT
325 C--TGCGTGCTGTCGATCCCGCTATCGGTCCT
* * **
24833100 GCTGCCACAACCCTCGGTTCGGCTAGGGCTTAGACGTGGAATGTACTCCGTATAACTAAGCCAAC
1 GCTGCCACAACCCTCGGTTCGGTTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
* * * * * *** *
24833165 CCATGAAACGAGAGTGCGGGCACTCAGTCAACCGGAGAGGCAGAATGCGCAAATTGGGGATCGAT
66 CCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGAC
* * * * *
24833230 CTGGTCCCCCCTACGTGCTACCGATCCTA-TGGCCGTAACCCTCGATCCGATCCT-ATCTTAAAC
131 CCGGTCCCCCCTACGTGCTATCGATCCTACT-GCCGCAACCCTCGATCTGAT-CTGATCTTAGAC
** * * *
24833293 TAAGAATGATCTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAAC
194 TGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAAC
* * * * * *
24833358 GAGCATGCGGGCACTCAGCCGGT-C-GAGAGGCATAATGCGCAAGCCAGGGATCTGCCCGGTCCC
259 GAGCGTGCGGGCGCTCAG-CTGTCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGAT-CC
* * * **
24833421 CCTCTACGTGCTGTAGATCCCGTTGCCGGTCCT
322 CCTCTGCGTGCTGTCGATCCCGCTATCGGTCCT
* * * * *
24833454 GCTGCCACAACCTTCGGTTCGGTTGGGGTTTAGATGTGGAATGTACTTCGTATGCCTAAGCCAAT
1 GCTGCCACAACCCTCGGTTCGGTTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
** * * * * * *
24833519 ATACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGC
66 CCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGAC
* ** *
24833584 CCGATCCCCCCT--GTG---T-G---CTA---CCATAACCCTCGATCTGATCCGATCTTAGACTG
131 CCGGTCCCCCCTACGTGCTATCGATCCTACTGCCGCAACCCTCGATCTGATCTGATCTTAGACTG
* *
24833637 AGAATGAACTTCGTATGCTTAGACTGGGGATGAACT-TCATATGCCTAAGTCAACCCATGAAACG
196 GGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCT-GTATGCCTAAGTCAACCCATGAAACG
* * * * *
24833701 AGCGTGCGGGTGCTCAGCCAACCGAAGAGGTCGACTGGAGAAGCATAATGTGCAAGCCGGGGATT
260 AGCGTGCGGGCGCTCAG-----C-----TGTC--C-GGAGAGGCATAATGCGCAAGCCGGGGATC
* * * * * *
24833766 AACTCGATCCTCCTCTGTGTGCTGTCGATCCCACTATCGATCTT
312 AGCCCGATCC-CCTCTGCGTGCTGTCGATCCCGCTATCGGTCCT
* * * ***
24833810 ACTGCCACAACCCTCGGTCCGGCTAAAGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTTCGGTTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
* * * * * * *
24833875 CCATGAAATGAGCGTGCGGGTGCTCAGCCGACCGAAAAAGTAGAATGCGTAAGCCGGGGATCGGC
66 CCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGAC
* * *
24833940 CCGGTCCCTCCTACGTGCTATCGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTG
131 CCGGTCCCCCCTACGTGCTATCGATCCTACTGCCGCAACCCTCGATCTGATCTGATCTTAGACTG
* * * * **
24834005 GGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCGTATTCCTAAGTCAACCCACAAAACGA
196 GGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGA
* * * ** *
24834070 GCGTGCGGGCGCTCAG-TCGAT-CGGAGAGGCATAATGTGTAAGTCGAAGATCAGCCCGGTCCCC
261 GCGTGCGGGCGCTCAGCT-G-TCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGAT-CCC
24834133 CTCTGCGTGCTGTCGATCCCGCTATCGGTCCT
323 CTCTGCGTGCTGTCGATCCCGCTATCGGTCCT
* * ** *
24834165 GCTGGCACCACCCTCAATTCGGTTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTTCGGTTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
* * * * * *
24834230 CCACGAAACGAGCGTGCGGGCGTTCAGCTGACCAGAGAGGCAGAATGCGTATGCCGAGGATCGAC
66 CCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGAC
** * * * * * *
24834295 CCAATCCCCCCTGCGGTGCTGTCGATCCTACTGCCACAACCCTCGATCCGGTGTGATCTTAGACT
131 CCGGTCCCCCCTAC-GTGCTATCGATCCTACTGCCGCAACCCTCGATCTGATCTGATCTTAGACT
* **
24834360 GGGAATGAGCTTCGTATGCTTAGACTGGAAATGAACTCTGTATGCCTAAGTCAACCCATGAAACG
195 GGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACG
* * * * * * * *
24834425 AGCGTACGGGCGCTCAGCTGTCCGGAGGGGTAGAATGCACAAGTCGGGGATCAGTCCGATCCACT
260 AGCGTGCGGGCGCTCAGCTGTCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCT
*
24834490 CTGCGTACTGTCGATCC
325 CTGCGTGCTGTCGATCC
24834507 TGCTGCGGCA
Statistics
Matches: 1140, Mismatches: 224, Indels: 85
0.79 0.15 0.06
Matches are distributed among these distances:
341 2 0.00
342 98 0.09
345 3 0.00
346 2 0.00
348 1 0.00
351 3 0.00
352 3 0.00
354 260 0.23
355 336 0.29
356 322 0.28
357 1 0.00
358 4 0.00
359 1 0.00
361 1 0.00
362 1 0.00
365 2 0.00
368 100 0.09
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (354 bp):
GCTGCCACAACCCTCGGTTCGGTTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
CCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGAC
CCGGTCCCCCCTACGTGCTATCGATCCTACTGCCGCAACCCTCGATCTGATCTGATCTTAGACTG
GGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGA
GCGTGCGGGCGCTCAGCTGTCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCTC
TGCGTGCTGTCGATCCCGCTATCGGTCCT
Found at i:24834577 original size:26 final size:26
Alignment explanation
Indices: 24834538--24834588 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
24834528 GGTTTGATCA
24834538 TAGACTAGGAATGAACTCCATATGCT
1 TAGACTAGGAATGAACTCCATATGCT
* * *
24834564 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCATATGC
24834589 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:24834589 original size:184 final size:185
Alignment explanation
Indices: 24834192--24834662 Score: 552
Period size: 184 Copynumber: 2.6 Consensus size: 185
24834182 TTCGGTTGGG
* * * *
24834192 GCTTAGAC-GTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCA
1 GCTTAGACTG-GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
** * * *
24834256 GCTGACCAGAGAGGCAGAATGCGTATGCCGAGGATCGACCCAATCCCCCCTGCGGTGCTGTCGAT
65 GCTGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGACCCAATCCACCCTGCGGTACTGTCGAT
* * * * *
24834321 CCTACTGCCACAACCCTCGATCCGGTGTGATCTTAGACTGGGAATGAGCTTCGTAT
130 CCTACTGCCACAACCCTCGATCCGGTGTGATCATAGACTAGGAATGAACTCCATAT
* *
24834377 GCTTAGACTGGAAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
24834442 CTGTCCGGAGGGGTAGAATGCACAAGTCGGGGATC-AGTCCGATCCACTCTGC-GTACTGTCGAT
66 CTGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGA-CCCAATCCACCCTGCGGTACTGTCGAT
* ** * * *
24834505 CCTGCTGCGGCAATCCTCGATTCGGTTTGATCATAGACTAGGAATGAACTCCATAT
130 CCTACTGCCACAACCCTCGATCCGGTGTGATCATAGACTAGGAATGAACTCCATAT
* * *
24834561 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** * *
24834626 CCGACCAGAGAGGCAGGGTGCGCAAGCCGGGGATCGA
66 CTGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGA
24834663 ACGGGTGGTA
Statistics
Matches: 238, Mismatches: 45, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
184 142 0.60
185 95 0.40
186 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.21
Consensus pattern (185 bp):
GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CTGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGACCCAATCCACCCTGCGGTACTGTCGATC
CTACTGCCACAACCCTCGATCCGGTGTGATCATAGACTAGGAATGAACTCCATAT
Found at i:24836160 original size:26 final size:26
Alignment explanation
Indices: 24836124--24836176 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24836114 CGAATCTGAT
*
24836124 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
24836150 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
24836176 C
1 C
24836177 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:24836181 original size:366 final size:367
Alignment explanation
Indices: 24835560--24836620 Score: 1191
Period size: 366 Copynumber: 2.9 Consensus size: 367
24835550 CTCTCTGTGT
* * *
24835560 GCTGTCGGTCCCGCTGCCACAACCCTCAGTTCGACTGGGGCTTAGACATGGAATG-AGCTCCCTA
1 GCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGTA-CTCCGTA
* ** * * * * *
24835624 CGCCTAAGTGAACCCACGAAATGGGCGTGCGGGAGCTCAGCCGATCGGAGAGGCAGAATGCGCAA
65 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGATC-GAGAGGCAGAATGCGTAA
* * * * * * * **
24835689 GCCAGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCTTGTTGTTGCAACCCTCGATCCAGCC
129 GCCGGGGATCGGCCCGGTCCCTCCTGAGTGCTATCGATCTTGCTGCTGTAACCCTCGATCGAATC
* * * * *
24835754 TGATCTTAGACGGGGAATGAACTCCTTATGCTTAGTCTAGGGATGAACTCCGTATGCCTAAGTCA
194 TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCA
* ** * * *
24835819 ACCCACGAAACGAGCGTGCAAGCACTCAGCTGACCGGAAAGGCCGCCCGAAGAGGCATAATGCGT
259 ACCCATGAAACGAGCGTGCGGGCGCTCAGCTAACCGGAAAGGCCGCTCGAAGAGGCATAATGCGT
* * *
24835884 AAGCTGGGGATCAGCCCATTCCCCTTCTGTGTGCTATCGATCCC
324 AAGCTGGGGATCAGCCCAGTCCCCATCTGCGTGCTATCGATCCC
* * *
24835928 GCTGTCGGTCATGCTACCACAACCCTC-GATCCGACTGGGGTTTAGACATGGAATGTACTCCGTA
1 GCTGTCGGTCCTGCTGCCACAACCCTCAG-TCCGACTGGGGCTTAGACATGGAATGTACTCCGTA
* * * * * *
24835992 TGCCTAAGCCAACCCACAAAACAAGCGTACGGGTGCTCAACCGATCTGAGAGGTAAAACGCGTAA
65 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGATC-GAGAGGCAGAATGCGTAA
* * * * *
24836057 GCCGGGGATTGGCCCGATCTC-CCT-AGTGCTATCGATCCTGCTGCTGTAACCCTCAATCGAATC
129 GCCGGGGATCGGCCCGGTCCCTCCTGAGTGCTATCGATCTTGCTGCTGTAACCCTCGATCGAATC
24836120 TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCA
194 TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCA
* * * * *
24836185 ACCCATGGAACGAGCGTGCGGGTGCTCAG-TCAGCCGGACAGGCCGATCGAAGAGGCATAATGCG
259 ACCCATGAAACGAGCGTGCGGGCGCTCAGCT-AACCGGAAAGGCCGCTCGAAGAGGCATAATGCG
* * * **
24836249 TAAGCTGGGGATTAGCTCGGTCCCCATCTGCGTGCTATCGATCTT
323 TAAGCTGGGGATCAGCCCAGTCCCCATCTGCGTGCTATCGATCCC
* * * * ** * ** * **
24836294 ACTGCCGGTCCTACTGCCACAACCCTCAGTCTGGTTGGGGCTTACATGTGGAATATACTTTGTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTAT
* * *
24836359 GCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAACCGGTCGAAGAGGCAGAATGCGTAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGATCG-AGAGGCAGAATGCGTAAG
* ** * * * * * * *
24836424 CTGGGGATCAACCTGGTCCCTCCTGTGTGCTACCAATTTTGCTACCGTAACCCTCGATCTG-ATC
130 CCGGGGATCGGCCCGGTCCCTCCTGAGTGCTATCGATCTTGCTGCTGTAACCCTCGATC-GAATC
* * * *
24836488 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATAAACTCTGTATGCCTAAATCA
194 TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCA
* * * *
24836553 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCAACCGGAAAGGCGGCTAG-AGAGGCATAATGCCT
259 ACCCATGAAACGAGCGTGCGGGCGCTCAGCTAACCGGAAAGGCCGCTCGAAGAGGCATAATGCGT
24836617 AAGC
324 AAGC
24836621 CAACCTATGA
Statistics
Matches: 573, Mismatches: 111, Indels: 19
0.82 0.16 0.03
Matches are distributed among these distances:
365 2 0.00
366 292 0.51
367 26 0.05
368 251 0.44
369 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (367 bp):
GCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTAT
GCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGATCGAGAGGCAGAATGCGTAAGC
CGGGGATCGGCCCGGTCCCTCCTGAGTGCTATCGATCTTGCTGCTGTAACCCTCGATCGAATCTG
ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAAC
CCATGAAACGAGCGTGCGGGCGCTCAGCTAACCGGAAAGGCCGCTCGAAGAGGCATAATGCGTAA
GCTGGGGATCAGCCCAGTCCCCATCTGCGTGCTATCGATCCC
Found at i:24836528 original size:26 final size:26
Alignment explanation
Indices: 24836492--24836544 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24836482 CTGATCTGAT
*
24836492 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* * *
24836518 CTTAGATTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
24836544 C
1 C
24836545 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:24836810 original size:254 final size:253
Alignment explanation
Indices: 24836357--24836833 Score: 632
Period size: 254 Copynumber: 1.9 Consensus size: 253
24836347 TATACTTTGT
* * *
24836357 ATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAACCGGTCGAAGAGGCAGAATGCGTA
1 ATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCAACCGATCGAAGAGGCAGAATGCGCA
* * * ** * *
24836422 AGCTGGGGATCAACCTGGTCCCTCCTGTGTGCTACCAATTTTGCTACCGTAACCCTCGATCTGAT
66 AGCTGGGGATCAACCCGATCCCTCCTGCGTGCTACCAATCCTGCTACCGCAACCCTCGATCCGAT
* * * *
24836487 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATAAACTCTGTATGCCTAAATC
131 CCGATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGGGATAAACTCTGTATGCCTAAATC
*
24836552 AACCCATGAAACGAGCGTGCGGGCGCTCAGCCAACCGGAAAGGCGGCTAGAGAGGCATA
196 AACCCA-CAAACGAGCGTGCGGGCGCTCAGCCAACCGGAAAGGCGGCTAGAGAGGCATA
* ** *** *
24836611 ATGCCTAAGCCAACCTATGAAACGAGTGTGCGGGAGCTCAGTTGATCGGAGAGGCAGAATGCGCA
1 ATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCAACCGATCGAAGAGGCAGAATGCGCA
** * * *
24836676 AGCTGGGGATCGGCCCGAT-CCTCCATGCGTGCTACCGATCCTGCTGCCGCAACCTTCGATCCGA
66 AGCTGGGGATCAACCCGATCCCTCC-TGCGTGCTACCAATCCTGCTACCGCAACCCTCGATCCGA
* * * **
24836740 TCCGATCTTAGACTGGGAAAGAATTTCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAGGT
130 TCCGATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGGGATAAACTCTGTATGCCTAAAT
*
24836805 CAACCCACAAATGAGCGTGCGGGCGCTCA
195 CAACCCACAAACGAGCGTGCGGGCGCTCA
24836834 ACCGACCAGA
Statistics
Matches: 189, Mismatches: 33, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
253 25 0.13
254 164 0.87
ACGTcount: A:0.26, C:0.26, G:0.27, T:0.21
Consensus pattern (253 bp):
ATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCAACCGATCGAAGAGGCAGAATGCGCA
AGCTGGGGATCAACCCGATCCCTCCTGCGTGCTACCAATCCTGCTACCGCAACCCTCGATCCGAT
CCGATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGGGATAAACTCTGTATGCCTAAATC
AACCCACAAACGAGCGTGCGGGCGCTCAGCCAACCGGAAAGGCGGCTAGAGAGGCATA
Found at i:24838413 original size:367 final size:368
Alignment explanation
Indices: 24837889--24838744 Score: 862
Period size: 368 Copynumber: 2.3 Consensus size: 368
24837879 ATGCTGTCGT
* * * * * * *
24837889 AACCCTCGGTCTGATTTGATCTTAGATTGGGAATGAACTCTGTATCCTTAGACTGGGGATGGATT
1 AACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACT
* * * * * * *
24837954 TCGTATGCCTAAGTCAAGCCACAAAATGAACGTACGAGCGCTTAGTCGACCGGAGAAGCTGGTCG
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGTCGACCGGAGAAGCTGGTCG
* ** ** * * * ** * *
24838019 GAGAGGCATAATGCGTAAGTCGGGGATCAGTTCGGT-CCTCTCTGCGTGCTGTCAATCCTGCTGT
131 GAAAGGCATAATGCACAAGTCGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCAATCCCACAGC
* **
24838083 CGATCCTACCGCCACAACCCTCGACCCAGCTGGGGGTTAAATGTGGAATGTACT-TCGTATGCCT
196 CGATCCTACCGCCACAACCCTCGACCCAGCTGGGGCTTAAACATGGAATGTACTAT-GTATGCCT
** * * * * * *
24838147 AAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGACTGGAGAGGTAGAATGTGCAAGTCAG
260 AAGCCAACCCACGAAACGAGCATACAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAG
** * * * *
24838212 GGATCCTTCCGGTCCCTCTTGCGTGCT-GCTGATCCTGCTACCGC
325 GGATCCACCCGATCCCCCCTGCGTGCTATC-GATCCTGCTACCGC
*
24838256 AACCCTCGATCCGATCTGATCTTAGACAGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACT
1 AACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACT
* *
24838321 CCATAAGCCTAAGTCAACCCACGAAACGAGCGTGC-AGACGCTCAGTCGACCGGAG-AGTCTGG-
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAG-CGCTCAGTCGACCGGAGAAG-CTGGT
* * *
24838383 CTGGAAAGGCATAATGCACAAG-CTGGGGATCAGCCCTATCCCCCTTTACGTGCTGTCTATCCCA
129 C-GGAAAGGCATAATGCACAAGTC-GGGGATCAGCCCGATCCCCCTCTACGTGCTGTCAATCCCA
* * * ** *** * *
24838447 CAGCCGGTCCTGCTGCTGCAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGTACTATGTATG
192 CAGCCGATCCTACCGCCACAACCCTCGACCCAGCTGGGGCTTAAACATGGAATGTACTATGTATG
* * * * *** * *
24838512 CCTAAGCCAATCCATGAAATGAGCATACAGGTGCTCATTTGACCGGAGAGGCGGAATGCGTAAGC
257 CCTAAGCCAACCCACGAAACGAGCATACAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGC
* * * **
24838577 CGGGGATCGACCCGATCCCCCCTGTGTGCTATCGATCCTGCTGTCGC
322 CAGGGATCCACCCGATCCCCCCTGCGTGCTATCGATCCTGCTACCGC
** * * *
24838624 AACCCTTAATACGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
1 AACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACT
* * * * *
24838689 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGGGCTCAGCCGACCAGAGA
66 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGTCGACCGGAGA
24838745 GGCAGGATGC
Statistics
Matches: 394, Mismatches: 86, Indels: 16
0.79 0.17 0.03
Matches are distributed among these distances:
366 6 0.02
367 132 0.34
368 253 0.64
369 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (368 bp):
AACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGTCGACCGGAGAAGCTGGTCG
GAAAGGCATAATGCACAAGTCGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCAATCCCACAGC
CGATCCTACCGCCACAACCCTCGACCCAGCTGGGGCTTAAACATGGAATGTACTATGTATGCCTA
AGCCAACCCACGAAACGAGCATACAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGG
GATCCACCCGATCCCCCCTGCGTGCTATCGATCCTGCTACCGC
Found at i:24838680 original size:26 final size:26
Alignment explanation
Indices: 24838644--24838696 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24838634 ACGGTCTGAT
24838644 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24838670 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24838696 C
1 C
24838697 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24839767 original size:159 final size:159
Alignment explanation
Indices: 24839391--24839770 Score: 417
Period size: 159 Copynumber: 2.4 Consensus size: 159
24839381 AGGTCTGTAT
* * ** *
24839391 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGTGCTAAG
* * * * *
24839456 TCGATCGGAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCCTTAATTGTTGTCGATC
66 TCGACCGAAGAGCCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTTAATTGCTGTCGATC
* ** * * *
24839521 CTGCTACCGTAACCCTCGGTCCAGTTTGA
131 CCGCTACCACAACCATCGGTCCAGCTGGA
** * * *
24839550 TTTTAGA-TTGGGAATGAACTCCGTATGCATAAG-TCAACCCATGAAACGAGCGTGCGGGTGCTA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCGTGCGGGTGCTA
* * *
24839613 AGTCGGCCGAAGAGCCATAATGCGCAAGCCGGGGATCGACCCGAT-CCCCCTCT-ATGTGCTGTC
64 AGTCGACCGAAGAGCCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCT-TAAT-TGCTGTC
* * *
24839676 GGTCCCGCTGCCACAACCATCGGTCCAGCTGGG
127 GATCCCGCTACCACAACCATCGGTCCAGCTGGA
* * * *
24839709 GCTTAGACATGGATTGAGCTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGTGCT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGTGCT
24839771 CAACCGATTA
Statistics
Matches: 179, Mismatches: 36, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
158 9 0.05
159 168 0.94
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGTGCTAAG
TCGACCGAAGAGCCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTTAATTGCTGTCGATC
CCGCTACCACAACCATCGGTCCAGCTGGA
Found at i:24839909 original size:26 final size:26
Alignment explanation
Indices: 24839868--24839920 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24839858 CCGGTCCAAT
*
24839868 CTTAGACTGGCAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
**
24839894 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
24839920 C
1 C
24839921 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:24840287 original size:26 final size:26
Alignment explanation
Indices: 24840236--24840288 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24840226 CCGGTCCGAT
*
24840236 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
*
24840262 CTTAGACTAGGG-ATGAACTACGTATG
1 CTTAGACT-GGGAATGAACTACATATG
24840288 C
1 C
24840289 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:24840883 original size:11 final size:11
Alignment explanation
Indices: 24840867--24840899 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
24840857 CGGTTAGGCT
24840867 CTCCGACGATG
1 CTCCGACGATG
24840878 CTCCGACGATG
1 CTCCGACGATG
*
24840889 CTCTGACGATG
1 CTCCGACGATG
24840900 GTGCCCCGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:24841350 original size:159 final size:158
Alignment explanation
Indices: 24840994--24841496 Score: 501
Period size: 158 Copynumber: 3.2 Consensus size: 158
24840984 AGCTCCGTAT
* * *
24840994 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *
24841059 CTGGTCGGAGAGGCAGAACGTGCAAGCCGGGGATCA-ACCCGGTCCCCGCTGCGTGCTGTCGATC
66 CCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGA-CCGGTCCCCCCTGCGTGTTGTCGATC
* * *
24841123 CTGCTGCCGCAACCCTCGGTCTAGTCCAA
130 CCGCTACCACAACCCTCGGTCTAGTCCAA
* * * * *
24841152 TCTTAGAC-TGGGAATGAACTCTGTATGCAC-AAGTCAACCCACGAAACGAGCGTACGGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGC-CTAAGCCAACCCACGAAACGAGCGTACGGGCGCTC
* * * * *
24841215 AGCCGACCGAAGAGGCATAATGTGCAAGTCGGGGATCAGACCGGTCCCCCTCTGCGTGTTGTCGG
64 AGCCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGACCGGTCCCCC-CTGCGTGTTGTCGA
* ****
24841280 TCCCGCTACCACAACCCTCGGTCTGGTTGGG
128 TCCCGCTACCACAACCCTCGGTCTAGTCCAA
* * * *
24841311 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * * *
24841376 CCAATCGGAGAAGCAGAATGCGCAAGCCGAGGATCGGCCCAGTCCCCCCTGCGTGTGGTCGATCC
66 CCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGACCGGTCCCCCCTGCGTGTTGTCGATCC
** ** * * * **
24841441 TACTACCGTAAACCTCGATCCAGTCTGA
131 CGCTACCACAACCCTCGGTCTAGTCCAA
*
24841469 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
24841497 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 62, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
157 2 0.01
158 147 0.53
159 126 0.46
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGACCGGTCCCCCCTGCGTGTTGTCGATCC
CGCTACCACAACCCTCGGTCTAGTCCAA
Found at i:24841506 original size:26 final size:26
Alignment explanation
Indices: 24841470--24841522 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24841460 CCAGTCTGAT
24841470 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24841496 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24841522 C
1 C
24841523 CTAACTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24841796 original size:355 final size:358
Alignment explanation
Indices: 24841284--24842208 Score: 1130
Period size: 355 Copynumber: 2.6 Consensus size: 358
24841274 TGTCGGTCCC
* *
24841284 GCTACCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAA
1 GCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAA
* * * *
24841348 CCCACGAAATGGGCGTACGGGCGCTCAGCCAATCGGAGAAGCAGAATGCGCAAGCCGAGGATCGG
65 CCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAAGCAGAATGCGCAAGCCGGGGATCGG
** * *
24841413 CCCAGTCCCCCCTGCGTG-TGGTCGATCCTACTACCGTAAACCTCGATCCAGTCTGATCTTAGAC
130 -CTGGTCCCCCCTGCGTGCT-GCCGATCCTACTACCGTAACCCTCGATCCAGTCTGATCTTAGAC
* * *
24841477 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAACTGAACCCACGAAAC
193 TGGGAATGAACTCCGTATGCTTAAACTGAGGATGAACTCCGTATGCCTAACTCAACCCACGAAAC
* *
24841542 GAGCGTGCGGGCACTCA-G-CC-GA-TCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCAGGT
258 GAGCGTACGGGCACTCACGACCGGAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCAGGT
* * * * *
24841603 CCCCCTTTGCGTTCTACCAATCCCGCTGTCGATCTT
323 CCCCCTCTACGTGCTACCAATCCCGCTGCCGATCCT
* *
24841639 GCTACCACAACCCTTGGTCTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
1 GCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAAC
* * * * *
24841704 TCACGAAATGAGCATGCAGGCGCTCAGTCGATCGGAGAAGCAGAATGTGCAAGCCGGGGATCGGC
66 CCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAAGCAGAATGCGCAAGCCGGGGATCGGC
* * * *
24841769 ATGGTCCCCCCTACGTGCTGCCGATCCTGCTACCGCAACCCTTGATCC-GATCTGATCTTAGACT
131 -TGGTCCCCCCTGCGTGCTGCCGATCCTACTACCGTAACCCTCGATCCAG-TCTGATCTTAGACT
* * * *
24841833 GGGAATGAACTCTGTATGCTTAAACTGAGGATGAACTCTGTATGTCTAAGTCAACCCACGAAACG
194 GGGAATGAACTCCGTATGCTTAAACTGAGGATGAACTCCGTATGCCTAACTCAACCCACGAAACG
* *
24841898 AGCGTACGGGCTCTCAGCCGACCGGAGAGGCGGCCGGAGAGGCATAATGCGCAAGCCTGGGATCA
259 AGCGTACGGGCACTCA--CGACC-G-GA----GCCGGAGAGGCATAATGCGCAAGCCGGGGATCA
* * *
24841963 GCCCGGTCCCCCTCTACGTGCTACCGATCCCGCTGCCGGTCCT
316 GCCAGGTCCCCCTCTACGTGCTACCAATCCCGCTGCCGATCCT
* * * * * * * * *
24842006 ACTGCGAGAACCCTCAGACCGACTGGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAAC
1 GCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAAC
* * * * *
24842071 CCACGAAATTAGCGTGCGGGTGCTCAGCCGACCGAAG-AGACAGAATGCGCAAGCCGGGGATCGA
66 CCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAAG-CAGAATGCGCAAGCCGGGGATCGG
* * **
24842135 CTCGGT-CCCCCTGTGTGCTACCGATCCTACTACCGTAACCCTCGATCCAGTCCAATCTTAGACT
130 CT-GGTCCCCCCTGCGTGCTGCCGATCCTACTACCGTAACCCTCGATCCAGTCTGATCTTAGACT
24842199 GGGAATGAAC
194 GGGAATGAAC
24842209 AAGCCGATGC
Statistics
Matches: 482, Mismatches: 69, Indels: 27
0.83 0.12 0.05
Matches are distributed among these distances:
354 2 0.00
355 237 0.49
356 2 0.00
358 1 0.00
359 2 0.00
362 2 0.00
366 61 0.13
367 175 0.36
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (358 bp):
GCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAAC
CCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAAGCAGAATGCGCAAGCCGGGGATCGGC
TGGTCCCCCCTGCGTGCTGCCGATCCTACTACCGTAACCCTCGATCCAGTCTGATCTTAGACTGG
GAATGAACTCCGTATGCTTAAACTGAGGATGAACTCCGTATGCCTAACTCAACCCACGAAACGAG
CGTACGGGCACTCACGACCGGAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCAGGTCCC
CCTCTACGTGCTACCAATCCCGCTGCCGATCCT
Found at i:24842117 original size:367 final size:354
Alignment explanation
Indices: 24841165--24842208 Score: 1100
Period size: 355 Copynumber: 2.9 Consensus size: 354
24841155 TAGACTGGGA
* * ** * *
24841165 ATGAACTCTGTATGCAC-AAGTCAACCCACGAAACGAGCGTACGGGTGCTGAGCCGACCGAAGAG
1 ATGAACTCCGTATGC-CTAACTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGACCGGAGAG
* * * *
24841229 GCATAATGTGCAAGTCGGGGATCAGACC-GGTCCCCCTCTGCGTG-T-----T---G-T--CGGT
65 GCATAATGCGCAAGCCGGGGATCAG-CCAGGTCCCCCTCTACGTGCTACCAATCCCGCTGCCGAT
** * * * ** *
24841281 CCCGCTACCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGC
129 CCTACTACCACAACCCTCAGACCGACTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGC
* * * *
24841345 CAACCCACGAAATGGGCGTACGGGCGCTCAGCCAATCGGAGAAGCAGAATGCGCAAGCCGAGGAT
193 CAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAAGCAGAATGCGCAAGCCGGGGAT
** * *
24841410 CGGCCCAGTCCCCCCTGCGTG-TGGTCGATCCTACTACCGTAAACCTCGATCCAGTCTGATCTTA
258 CGG-CTGGTCCCCCCTGCGTGCT-GCCGATCCTACTACCGTAACCCTCGATCCAGTCTGATCTTA
* *
24841474 GACTGGGAATGAACTCCGTATGCTTAGACTGGGG
321 GACTGGGAATGAACTCCGTATGCTTAAACTGAGG
* * *
24841508 ATGAACTCCGTATGCCTAACTGAACCCACGAAACGAGCGTGCGGGCACTCAGCCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGACCGGAGAGG
* * * * *
24841573 CATAATGCGCAAGCCGGGGATCAGCCAGGTCCCCCTTTGCGTTCTACCAATCCCGCTGTCGATCT
66 CATAATGCGCAAGCCGGGGATCAGCCAGGTCCCCCTCTACGTGCTACCAATCCCGCTGCCGATCC
* ** * * * *
24841638 TGCTACCACAACCCTTGGTCTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAA
131 TACTACCACAACCCTCAGACCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAA
* * * * *
24841703 CTCACGAAATGAGCATGCAGGCGCTCAGTCGATCGGAGAAGCAGAATGTGCAAGCCGGGGATCGG
196 CCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAAGCAGAATGCGCAAGCCGGGGATCGG
* * * *
24841768 CATGGTCCCCCCTACGTGCTGCCGATCCTGCTACCGCAACCCTTGATCC-GATCTGATCTTAGAC
261 C-TGGTCCCCCCTGCGTGCTGCCGATCCTACTACCGTAACCCTCGATCCAG-TCTGATCTTAGAC
*
24841832 TGGGAATGAACTCTGTATGCTTAAACTGAGG
324 TGGGAATGAACTCCGTATGCTTAAACTGAGG
* * * *
24841863 ATGAACTCTGTATGTCTAAGTCAACCCACGAAACGAGCGTACGGGCTCTCAGCCGACCGGAGAGG
1 ATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTACGGGCACTCA---G-CC---GA--
* * *
24841928 CGGCCGGAGAGGCATAATGCGCAAGCCTGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGATCC
57 ---CCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCAGGTCCCCCTCTACGTGCTACCAATCC
* * * * *
24841993 CGCTGCCGGTCCTACTGCGAGAACCCTCAGACCGACTGGGGCTTAGACATGGAATGTACTCTGTA
119 CGCTGCCGATCCTACTACCACAACCCTCAGACCGACTGGGGCTTAGACATGGAATGTACTCCGTA
* * * *
24842058 TGCCTAAGCCAACCCACGAAATTAGCGTGCGGGTGCTCAGCCGACCGAAG-AGACAGAATGCGCA
184 TGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAAG-CAGAATGCGCA
* * *
24842122 AGCCGGGGATCGACTCGGT-CCCCCTGTGTGCTACCGATCCTACTACCGTAACCCTCGATCCAGT
248 AGCCGGGGATCGGCT-GGTCCCCCCTGCGTGCTGCCGATCCTACTACCGTAACCCTCGATCCAGT
**
24842186 CCAATCTTAGACTGGGAATGAAC
312 CTGATCTTAGACTGGGAATGAAC
24842209 AAGCCGATGC
Statistics
Matches: 583, Mismatches: 85, Indels: 43
0.82 0.12 0.06
Matches are distributed among these distances:
342 3 0.01
343 90 0.15
344 1 0.00
349 1 0.00
352 1 0.00
353 1 0.00
354 2 0.00
355 241 0.41
356 2 0.00
358 1 0.00
359 2 0.00
362 2 0.00
366 61 0.10
367 175 0.30
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (354 bp):
ATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTACGGGCACTCAGCCGACCGGAGAGG
CATAATGCGCAAGCCGGGGATCAGCCAGGTCCCCCTCTACGTGCTACCAATCCCGCTGCCGATCC
TACTACCACAACCCTCAGACCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAA
CCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAAGCAGAATGCGCAAGCCGGGGATCGG
CTGGTCCCCCCTGCGTGCTGCCGATCCTACTACCGTAACCCTCGATCCAGTCTGATCTTAGACTG
GGAATGAACTCCGTATGCTTAAACTGAGG
Found at i:24842351 original size:146 final size:146
Alignment explanation
Indices: 24842084--24842354 Score: 337
Period size: 146 Copynumber: 1.9 Consensus size: 146
24842074 CGAAATTAGC
* * ** * * *
24842084 GTGCGGGTGCTCAGCCGACCGAAGAGACAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTGT
1 GTGCGGGTGCTCAACCGACCGAAGAGACAGAATGCGCAAGCCAGGGATAAACCCAGTCCCCCTGC
** * *
24842149 GTGCTACCGATCCTACTACCGTAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACAAGCC
66 GTGCTACCGATCCTACTACCACAACCCTCGATCCAGTCCAACCTTAGACTGAGAATGAACAAGCC
24842214 GATGCACGAAACGAGT
131 GATGCACGAAACGAGT
* *
24842230 GTGCGGGTGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATAAACCCAGTCGCCCCTG
1 GTGCGGGTGCTCAACCGACCGAAGAGACAGAATGCGCAAGCCAGGGATAAACCCAGTC-CCCCTG
* ** * * * **
24842295 CGTGTTGTCGATCCTGCTGCCACAACCCTCGATCTAGTCTGACCTTAGACT-AGAATGAAC
65 CGTGCTACCGATCCTACTACCACAACCCTCGATCCAGTCCAACCTTAGACTGAGAATGAAC
24842355 TCCGTATGCA
Statistics
Matches: 103, Mismatches: 21, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
146 58 0.56
147 45 0.44
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (146 bp):
GTGCGGGTGCTCAACCGACCGAAGAGACAGAATGCGCAAGCCAGGGATAAACCCAGTCCCCCTGC
GTGCTACCGATCCTACTACCACAACCCTCGATCCAGTCCAACCTTAGACTGAGAATGAACAAGCC
GATGCACGAAACGAGT
Found at i:24843745 original size:26 final size:26
Alignment explanation
Indices: 24843716--24843768 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24843706 GGATAAAAAT
*
24843716 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
24843742 CTTATACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
24843768 C
1 C
24843769 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:24844262 original size:26 final size:26
Alignment explanation
Indices: 24844221--24844273 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24844211 CCGATCCGAT
*
24844221 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
24844247 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
24844273 C
1 C
24844274 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Done.