Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 253 of 402
Found at i:24845470 original size:158 final size:157
Alignment explanation
Indices: 24844978--24845462 Score: 468
Period size: 158 Copynumber: 3.1 Consensus size: 157
24844968 GCTTATACAT
* * * * *
24844978 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTGCGGGCGCT-AACCGGTCGGAG
** * * * * * *
24845043 AGGCAGAATTTGCAAGCCGGGGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTGCCATA
65 AGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTACTGCCACA
* ** * * *
24845108 TCCCTTGAACTGGTCCAATCTTAGACTG
130 ACCCTTGGTCCGATCCGATCTTAGACTG
* * * * ** * *
24845136 GGAATGAACTCCGTATGCATAAGTTAACCCACAAAACGAGCGTGCAGGCACTAAGCTAGCCGAAG
1 GGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTGCGGGCGCTAA-CCGGTCGGAG
* * * * ** * * *
24845201 AGCCATAATGCACAAATCGGGGATCGACCCGATCCCAATCTGCGTGCTACCGGTCCCACTGCCAC
65 AGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCC-CCCTGCGTGCTATCGATCCTACTGCCAC
* ** **
24845266 AACCCTCGGTCCGATTGGGGCTTAGACAT-
129 AACCCTTGGTCCGATCCGATCTTAGAC-TG
* * * *
24845295 GGAATGAGCTCCCTATGCCTAAGCTAACCCATAAAACGGGCGTGCGGGCGCTGAACCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTGCGGGCGCT-AACCGGTCGGAG
* * * *
24845360 AGGCAGAATGCGTAAGTCGAGGATCAACCCGATCCCCCCTGCGTGCTATCGATCCTATTGCCACA
65 AGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTACTGCCACA
*
24845425 ACTCTTGGTCCGATCCGATCTTAGACTG
130 ACCCTTGGTCCGATCCGATCTTAGACTG
24845453 GGAATGAACT
1 GGAATGAACT
24845463 TCATATGCTT
Statistics
Matches: 249, Mismatches: 73, Indels: 10
0.75 0.22 0.03
Matches are distributed among these distances:
157 2 0.01
158 130 0.52
159 114 0.46
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTGCGGGCGCTAACCGGTCGGAGA
GGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTACTGCCACAA
CCCTTGGTCCGATCCGATCTTAGACTG
Found at i:24845495 original size:26 final size:26
Alignment explanation
Indices: 24845444--24845496 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24845434 CCGATCCGAT
*
24845444 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
24845470 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
24845496 C
1 C
24845497 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24846704 original size:26 final size:26
Alignment explanation
Indices: 24846668--24846720 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24846658 TTGATCCGAT
24846668 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
24846694 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
24846720 C
1 C
24846721 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:24847018 original size:25 final size:26
Alignment explanation
Indices: 24846990--24847041 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24846980 CCGATCTGAT
24846990 CTTAGACT-GGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
24847015 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
24847041 C
1 C
24847042 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 8 0.33
26 14 0.58
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:24848215 original size:26 final size:26
Alignment explanation
Indices: 24848186--24848236 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
24848176 CCGGTCCGAT
24848186 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24848212 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
24848237 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24849475 original size:26 final size:26
Alignment explanation
Indices: 24849434--24849486 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24849424 CCAGTCTGAT
24849434 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24849460 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
24849486 C
1 C
24849487 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24849810 original size:26 final size:26
Alignment explanation
Indices: 24849760--24849810 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
24849750 TGGTCCGATC
**
24849760 TTAGACTGAGAATGAACTCTGTATGT
1 TTAGACTGAGAATGAACTCCATATGT
* *
24849786 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTGAGAATGAACTCCATATG
24849811 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCATATGT
Found at i:24850439 original size:26 final size:26
Alignment explanation
Indices: 24850410--24850462 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24850400 CCGATCCGAT
*
24850410 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
24850436 CTTAGACAGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
24850462 C
1 C
24850463 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:24850583 original size:183 final size:181
Alignment explanation
Indices: 24850251--24850703 Score: 559
Period size: 183 Copynumber: 2.5 Consensus size: 181
24850241 TCCGGCTAGG
* * * * *
24850251 GCTTAGACATGGAAT-ATACTCCGCATGCCTAAGCCAACCCACGAAACGAGTGTGCGAGCGCTCA
1 GCTTAGACAGGGGATGA-ACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
24850315 GCCAATCGGGGAGGCAGAATGGGCAAAGCGAGAATCGGCCCGGTCCCCCCTACGTGCTATCGATC
65 GCCTA-CCGAGAGGCAGAAT--GCAAAGCGAGAATCGACCCGGTCCCCCCTACGTGCTACCGATC
* *
24850380 CTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
127 CTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATAAACTCCGTAT
* * *
24850435 GCTTAGACAGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACAGGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** *
24850500 CCTACCGAGAGGCAGAATGCACAAGTCGAGGATCGACCCGGTCCCCCTTGTGTGCTACCGATCGT
66 CCTACCGAGAGGCAGAATGCA-AAG-CGAGAATCGACCCGGTCCCCCCTACGTGCTACCGATCCT
* *
24850565 GCTGTTGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATAAACTCCGTAT
129 GCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATAAACTCCGTAT
* * * * * *
24850618 GCTTAGACTGAGGATGAACTTCGCATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGTTCAG
1 GCTTAGACAGGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
24850683 -CTGACCAGAGAGGCAGGATGC
66 CCT-ACC-GAGAGGCAGAATGC
24850704 GTAAGCCGGG
Statistics
Matches: 232, Mismatches: 32, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
181 3 0.01
182 5 0.02
183 152 0.66
184 71 0.31
185 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (181 bp):
GCTTAGACAGGGGATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCTACCGAGAGGCAGAATGCAAAGCGAGAATCGACCCGGTCCCCCCTACGTGCTACCGATCCTGC
TGTCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATAAACTCCGTAT
Found at i:24850645 original size:26 final size:26
Alignment explanation
Indices: 24850593--24850645 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24850583 CCGGTCCGAT
*
24850593 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGCATG
* *
24850619 CTTAGACTGAGG-ATGAACTTCGCATG
1 CTTAGACT-AGGAATAAACTCCGCATG
24850645 C
1 C
24850646 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGCATG
Found at i:24850987 original size:115 final size:116
Alignment explanation
Indices: 24850802--24851019 Score: 312
Period size: 115 Copynumber: 1.9 Consensus size: 116
24850792 TCATACAATG
* *
24850802 GTCCCCTAGGCCTTCATGTGAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTCACAAATTTC
1 GTCCCCTAAGCCTTAATGTGAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTCACAAATTTC
* * *
24850867 AAAACTTTTTGCGGTTTTGGATTTTTTTAAA-TTTTTTCAGAAAGAGTTTT
66 AAAACTTTTTACGATTTTGGATTTTTTAAAAGTTTTTTCAGAAAGAGTTTT
* * * * * * *
24850917 GTCCCTTAAGCCTTAATGTGATGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTT
1 GTCCCCTAAGCCTTAATGTGAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTCACAAATTTC
*
24850982 GAAACTTTTTACGATTTTGGATTTTTTAAAAGTTTTTT
66 AAAACTTTTTACGATTTTGGATTTTTTAAAAGTTTTTT
24851020 TAAAAGTTTT
Statistics
Matches: 89, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
115 83 0.93
116 6 0.07
ACGTcount: A:0.23, C:0.17, G:0.16, T:0.44
Consensus pattern (116 bp):
GTCCCCTAAGCCTTAATGTGAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTCACAAATTTC
AAAACTTTTTACGATTTTGGATTTTTTAAAAGTTTTTTCAGAAAGAGTTTT
Found at i:24851038 original size:13 final size:12
Alignment explanation
Indices: 24851003--24851044 Score: 66
Period size: 12 Copynumber: 3.3 Consensus size: 12
24850993 CGATTTTGGA
24851003 TTTTTTAAAAGT
1 TTTTTTAAAAGT
24851015 TTTTTTAAAAGT
1 TTTTTTAAAAGT
24851027 TTTTTTAGAAAGAT
1 TTTTTTA-AAAG-T
24851041 TTTT
1 TTTT
24851045 CTCTCCAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 19 0.68
13 4 0.14
14 5 0.18
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.60
Consensus pattern (12 bp):
TTTTTTAAAAGT
Found at i:24851455 original size:26 final size:25
Alignment explanation
Indices: 24851402--24851461 Score: 61
Period size: 26 Copynumber: 2.4 Consensus size: 25
24851392 GCATGTGCAC
* *
24851402 AATG-GCTCAAAATCTTAGATTGGT
1 AATGAGCTCCAAATCTTAGAATGGT
24851426 AATGAGCTCCAAATGCTTAGACATGG-
1 AATGAGCTCCAAAT-CTTAGA-ATGGT
*
24851452 AATGAACTCC
1 AATGAGCTCC
24851462 GTATGCCTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 4 0.13
25 8 0.27
26 15 0.50
27 3 0.10
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (25 bp):
AATGAGCTCCAAATCTTAGAATGGT
Found at i:24851838 original size:159 final size:157
Alignment explanation
Indices: 24851440--24851904 Score: 454
Period size: 159 Copynumber: 2.9 Consensus size: 157
24851430 AGCTCCAAAT
* * *
24851440 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCT-TTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGG-TGCTCA
* * * *
24851504 GTCGACTGGAAAGGCAAAATGCACAAGCCGGAGATTGACTCGGTCCCCCCCTTGCGTGCTGTCGA
65 GTCGACCGGAGAGGCAAAATGCGCAAGCCGG-GATCGACTCGGT-CCCCCC-TGCGTGCTGTCGA
* * * *
24851569 TCCTGCTACTGCAACCCTCGGTCCGATCCGA
127 TCCTGCTGCCGCAACCCTCAGTCCGATCAGA
* * * * * *
24851600 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAAACCGTGAAACGAGCATGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCA
** * * * * *
24851664 -TCCGGTCGAAGAGGCATAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGA
65 GT-CGACCGGAGAGGCAAAATGCGCAAGCC-GGGATCGACTCGGTCCCCC-CTGCGTGCTGTCGA
* * * * *
24851728 TCCCGCTGCCACAACCCTCAGTCTG-GCTAGG
127 TCCTGCTGCCGCAACCCTCAGTCCGATC-AGA
* *
24851759 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCATGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCATGCGGGTGCTCA
* * * * * *
24851823 GTCGACCGGAGAGGCAGAATGCGTAAGTCGAGGATCGACTCGATCCCCCCTACGTGCTGTCAATC
65 GTCGACCGGAGAGGCAAAATGCGCAAGCCG-GGATCGACTCGGTCCCCCCTGCGTGCTGTCGATC
*
24851888 CTGCTGTCGCAACCCTC
129 CTGCTGCCGCAACCCTC
24851905 GATCCGGTCT
Statistics
Matches: 243, Mismatches: 52, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
158 31 0.13
159 128 0.53
160 82 0.34
161 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAG
TCGACCGGAGAGGCAAAATGCGCAAGCCGGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCAGTCCGATCAGA
Found at i:24852314 original size:26 final size:26
Alignment explanation
Indices: 24852285--24852337 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24852275 CCAGTTTAAT
*
24852285 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
24852311 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
24852337 C
1 C
24852338 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24852657 original size:368 final size:366
Alignment explanation
Indices: 24851732--24853107 Score: 1561
Period size: 367 Copynumber: 3.8 Consensus size: 366
24851722 TGTCGATCCC
* * * * ** **
24851732 GCTGCCACAACCCTCAGTCTGGCTAGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAA
1 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGATGTGGAATGTA-CTCTGTATGCCTAAGCCAA
* * * * * * *
24851796 CCCATGAAACAGGCATGCGGGTGCTCAG-TCGACCGGAGAGGCAGAATGCGTAAGTCGAGGATC-
65 CCCATGAAACAAGCATACGGGCGCTCAGATCG-CCAGAGAGGCAGAATGCGCAAGCCAAGGATCG
* * *
24851859 GACTCGATCCCCCCTACGTGCTGTCAATCCTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAAA
129 GTC-CGATCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGA
* *
24851924 CTGGGAATGAACTCTATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAA
193 CTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * ** * * * * *
24851989 TGAGCGTGCGAGCGCTCAGCTAACCGGAGAGGCCTGTCGGAGAGTCATAATGCGTACGCTGGGGA
258 CGAGCGTGCGGGCGCTCAACTGGCCAGAGAGGCC-GTCGGAGAGGCATAATGTGTAAGCTAGGGA
* * * * * * * *
24852054 TCAGCCCGTTCCCTCTCTGCATGCTACCGATCCTG-TGTCGGTGCT
322 TCAACCCGATCCCCCTCTGCGTGCTGCCGATCCCGCTGCCAGT-CT
* * * * * *
24852099 GCTGGCATAACCCTCGGTCTGGCTGGGGTTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGATGTGGAATGTACTCTGTATGCCTAAGCCAAC
* * * * *
24852164 CCATTAAACGAGCGTACGGGGGCTCA-ATCGATCAGAGAGGCAGAATGCGCAAGCCAAGGATCGG
66 CCATGAAACAAGCATACGGGCGCTCAGATCG-CCAGAGAGGCAGAATGCGCAAGCCAAGGATCGG
* ** * * * *
24852228 TACGATCCCCCCTGTGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCAGTTTAATCTTAGATT
130 TCCGATCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACT
* *
24852293 GGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTAAACCCATGAAACG
195 GGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* *
24852358 AGCGTTCGGGCGTTCAACTGGCCAGAGAGGCCAGTCGGAGAGGCATAATGTGTAAGCTAGGGATC
260 AGCGTGCGGGCGCTCAACTGGCCAGAGAGGCC-GTCGGAGAGGCATAATGTGTAAGCTAGGGATC
* *
24852423 AACCCGATCCCCCTCTGCGTGCTGTCAATCCCGCTGCCAGTCTT
324 AACCCGATCCCCCTCTGCGTGCTGCCGATCCCGCTGCCAGTC-T
* * * *
24852467 ACTACCACAACCCTCGGTCCGACTGGGGCTTAGATGTGGAATGCACTTTGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGATGTGGAATGTACTCTGTATGCCTAAGCCAAC
* * * * *
24852532 CCACGAAACAAGCATGCGGGCGCTCAGCAT-GCTAGAGAGGCAAAATGCGTAAGCCAAGGATCGG
66 CCATGAAACAAGCATACGGGCGCTCAG-ATCGCCAGAGAGGCAGAATGCGCAAGCCAAGGATCGG
* *
24852596 TCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGATTCGGTCTGATCTTAGACT
130 TCCGATCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACT
* *
24852661 GGGAATGAACTCCGTAAGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
195 GGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * * * *
24852726 AGTGTGCGGGCGCTC-AGTCGGTCTGA-AGGCCGACCGGAGAGGCTTAATGTGCAAGC-CGAGGA
260 AGCGTGCGGGCGCTCAACT-GGCCAGAGAGGCCG-TCGGAGAGGCATAATGTGTAAGCTAG-GGA
* *
24852788 TCTACCCGATCCCCCTCTGCGTGCTGCCGATCTCGCTGCCAGTCCT
322 TCAACCCGATCCCCCTCTGCGTGCTGCCGATCCCGCTGCCAGT-CT
* * * *
24852834 GCTGCCACAACCCTCGGTCCGACTAGGGCTTAGATGTGGAATGTACCCCGTATGCCTAAACCAAC
1 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGATGTGGAATGTACTCTGTATGCCTAAGCCAAC
* * * * * * ** *
24852899 CCATGAAA-AGAGCTTACGGGCGCTCAG-CCGGCCGGAGTGGCAGAATGCACAAGTCGGGGATCA
66 CCATGAAACA-AGCATACGGGCGCTCAGATC-GCCAGAGAGGCAGAATGCGCAAGCCAAGGATCG
* * * * * *
24852962 GCCCGGTCCCTCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGAT
129 GTCCGATCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGAC
* * *
24853027 TGGGAATGAATTCC-TATGCTTAGACTAGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
194 TGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
*
24853091 GAGCGTGCAGGCGCTCA
259 GAGCGTGCGGGCGCTCA
24853108 GTCGAGCAAA
Statistics
Matches: 857, Mismatches: 137, Indels: 30
0.84 0.13 0.03
Matches are distributed among these distances:
366 64 0.07
367 543 0.63
368 247 0.29
369 1 0.00
370 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (366 bp):
GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGATGTGGAATGTACTCTGTATGCCTAAGCCAAC
CCATGAAACAAGCATACGGGCGCTCAGATCGCCAGAGAGGCAGAATGCGCAAGCCAAGGATCGGT
CCGATCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTG
GGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCGGGCGCTCAACTGGCCAGAGAGGCCGTCGGAGAGGCATAATGTGTAAGCTAGGGATCAA
CCCGATCCCCCTCTGCGTGCTGCCGATCCCGCTGCCAGTCT
Found at i:24852689 original size:26 final size:26
Alignment explanation
Indices: 24852653--24852702 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
24852643 TCGGTCTGAT
24852653 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
*
24852679 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
24852703 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:24854069 original size:159 final size:160
Alignment explanation
Indices: 24853777--24854320 Score: 509
Period size: 159 Copynumber: 3.4 Consensus size: 160
24853767 CTTAGACATC
* * * *
24853777 GAATGCACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAACCGATCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGTCGGAGA
* ** * * * * *
24853842 GGTAGAATGTACAAGCCGGAGATC-GACCAGATCCCCCTCTGCATGCTGTGCA-TCTTGCTGCCG
66 GGCAGAATGCGCAAGCCGGGGATCGGCCCAGATCCCCCTCTGCGTGCTG-CCAGTCCTGCTGCCG
* * *
24853905 TAACCCTCGGTCTGGTCCGATCTTACACTGG
130 CAACCCTCGGTCTGGTCAGATCTTAGACTGG
* * * * * *
24853936 GAATGAACTCAGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGTCGAAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGTCGGAGA
* * * *
24854001 GGCATAATGCGCAAGCCGGGGATCGGCCCAG-TCCCCCTCGGGGTGCTGCCAGTCCTGCTGCCAC
66 GGCAGAATGCGCAAGCCGGGGATCGGCCCAGATCCCCCTCTGCGTGCTGCCAGTCCTGCTGCCGC
* **
24854065 AACCCTCGGTCCGG-CTAGGGCTTAGACAT-G
131 AACCCTCGGTCTGGTC-AGATCTTAGAC-TGG
* * *
24854095 GAATGAGCTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGTTA-TCAGCCGG-CTGG
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGG-CACTCAGCCGGTC-GG
* * * * * * *
24854157 AGAGGTAGAATGCGCAAGTCAGGGATCGGCCC-GATCCCCCT-TACGTGCTGTC-GATCCAGCTA
63 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGATCCCCCTCTGCGTGCTGCCAG-TCCTGCTG
* * * *
24854219 TCGCAACCCTCGGT-TCGATCTGATCTCAGACTGG
127 CCGCAACCCTCGGTCT-GGTCAGATCTTAGACTGG
* * * * *
24854253 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTCAGCCGGCCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGTCGGAGA
24854318 GGC
66 GGC
24854321 CGATCGAAGA
Statistics
Matches: 307, Mismatches: 63, Indels: 31
0.77 0.16 0.08
Matches are distributed among these distances:
157 3 0.01
158 94 0.31
159 204 0.66
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (160 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGTCGGAGA
GGCAGAATGCGCAAGCCGGGGATCGGCCCAGATCCCCCTCTGCGTGCTGCCAGTCCTGCTGCCGC
AACCCTCGGTCTGGTCAGATCTTAGACTGG
Found at i:24854982 original size:159 final size:159
Alignment explanation
Indices: 24854632--24855056 Score: 455
Period size: 159 Copynumber: 2.7 Consensus size: 159
24854622 ATGAACTCTG
* * * *
24854632 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCATAATGCGT
1 TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCAGCCGAAGAGGCATAATGCGC
*
24854697 AAGCCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGGTCCTGCTACGACAACCCTCGGTTCG
66 AAGCCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGGTCCTGCTACCACAACCCTCGGTTCG
* *
24854762 GCTGGGGCTTAGACATGGAATTTACTCCA
131 ACTGGGGCTTAGACATGGAATTGACTCCA
* * * * * * *
24854791 TATGCCTAACCCAACCCACGAAATGAGTGTGCGGGCACTGAGCCGGTCGAAGAGGCATAATGCGC
1 TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCAGCCGAAGAGGCATAATGCGC
* ** *** * * *
24854856 AAGTC-GAGGATTGGCTTGGTCCCCCTCTGCGTGTTACCGGTCCTGCTGCCACAACCCTTGGTTC
66 AAGCCAG-GGATCAGCCCAGTCCCCCTCTGCGTGCTACCGGTCCTGCTACCACAACCCTCGGTTC
*
24854920 GACTGGGGCTTAGACATGGAA-TGAGCTCCC
130 GACTGGGGCTTAGACATGGAATTGA-CTCCA
* * * * * * *
24854950 TATGCCTAAGCCAACCCATGAAAC-AGACGTGCGGACGCTCAGACGGCTGAAGAGACAGAATGCG
1 TATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCACTCAGCCAGCCGAAGAGGCATAATGCG
* * * ** *
24855014 TAAGCCGGGGATCGGCCCA-TCCCCCT-TATGTGCTACCGATCCT
65 CAAGCCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGGTCCT
24855057 ATTGCCACAA
Statistics
Matches: 216, Mismatches: 46, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
157 13 0.06
158 12 0.06
159 190 0.88
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCAGCCGAAGAGGCATAATGCGC
AAGCCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGGTCCTGCTACCACAACCCTCGGTTCG
ACTGGGGCTTAGACATGGAATTGACTCCA
Found at i:24855114 original size:26 final size:26
Alignment explanation
Indices: 24855085--24855137 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24855075 CCGATCCGAT
*
24855085 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
24855111 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24855137 C
1 C
24855138 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24855481 original size:26 final size:26
Alignment explanation
Indices: 24855452--24855503 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
24855442 TCCGATCCGA
24855452 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
24855478 TCTTAGACTGGGGATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
24855504 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:24856758 original size:170 final size:168
Alignment explanation
Indices: 24856432--24856761 Score: 405
Period size: 170 Copynumber: 2.0 Consensus size: 168
24856422 CCCTCTGCGT
* * *
24856432 GCTGCCGGTCCCGCTGCTAGAACCCTTGGTCCGGTGGGCTTAGACATGGAAAGAGCTCCCTATCC
1 GCTGCCGGTCCCGCTGCCACAACCCTTGGTCCGGTGGGCTTAGACATAGAAAGAGCTCCCTATCC
* * * *
24856497 CTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGAAGAGGCAGAATACGCAGCCG
66 CTAAACCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGACCGAAGAGGCAGAATACGAAGCCG
*
24856562 GGGATCGACCCGATCCCCCTCTGCGTGCTGTTGATCCC
131 AGGATCGACCCGATCCCCCTCTGCGTGCTGTTGATCCC
* * * * * *
24856600 GCTGTCGGTCCTGCTGCCACAACCCTTGGTTCGGCTGGGGTTTAGACATAGAATGTA-CTCCGTA
1 GCTGCCGGTCCCGCTGCCACAACCCTTGGTCCGG-T-GGGCTTAGACATAGAAAG-AGCTCCCTA
* * ** *
24856664 TGCCTAAACCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGATTGGAGAGGCAGAATGTAC-A
63 TCCCTAAACCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGACCGAAGAGGCAGAA--TACGA
* *
24856728 AGCCGAGGATCGATCCGGTCCCCC-CTGCGTGCTG
126 AGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTG
24856762 GCGATCCTAC
Statistics
Matches: 136, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
168 29 0.21
169 1 0.01
170 81 0.60
171 22 0.16
172 3 0.02
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (168 bp):
GCTGCCGGTCCCGCTGCCACAACCCTTGGTCCGGTGGGCTTAGACATAGAAAGAGCTCCCTATCC
CTAAACCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGACCGAAGAGGCAGAATACGAAGCCG
AGGATCGACCCGATCCCCCTCTGCGTGCTGTTGATCCC
Found at i:24856834 original size:26 final size:26
Alignment explanation
Indices: 24856798--24856850 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24856788 CCGGTCCAAT
24856798 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
24856824 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
24856850 C
1 C
24856851 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:24858015 original size:159 final size:157
Alignment explanation
Indices: 24857725--24858227 Score: 499
Period size: 159 Copynumber: 3.2 Consensus size: 157
24857715 GCTCCGTATG
* * * * * *
24857725 CTTAGAAATGGAATGAACTCCGTATGCCTAAAACAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * * * *
24857790 CGGCTAGAGGGGTAGAATGCGCAAGTCGGGGATCAACCCGATCCACCCCTGTATGCTACCGATCC
66 CGCCGA-AGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCC-CCCCTGCATGCTACCGATCC
* * *
24857855 TGTTGCCGCAACCCTCGATCCGGTCTGAT
129 TGCTGCCGCAACCCTCGGTCCGATCTGAT
* * * *
24857884 CTTAGACAGGGAATGAACTCCGTATGCATAAGTCAGCCCACGAAACGAGCATGCGGGCGCTGAGT
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCATGCGGGCGCTCAG-
* * * *
24857949 CAGCCGAAGAGGCATAATGTGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCATGCTACCGGTCC
65 CCGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCC-CTGCATGCTACCGATCC
* * **
24858014 TGCTGCCACAACCCTCGGTCC-AACTGGGG
129 TGCTGCCGCAACCCTCGGTCCGATCT-GAT
* * * *
24858043 CTTAGACATGGAATGAGCTGCC-TATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAG
1 CTTAGACAGGGAATGAACT-CCGTATGCCTAAGACAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * *
24858107 CCGTTCGGAGAGGCAGAATGCGCAAGCTGAGGATC-GACCCGGTCCCCCCTGCGTGCTGCCGATC
65 CCG-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGGTCCCCCCTGCATGCTACCGATC
* ** * *
24858171 CTACTGTGGCAACCCTCGGTCTGATCCGAT
128 CTGCTGCCGCAACCCTCGGTCCGATCTGAT
* *
24858201 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACAGGGAATGAACTCCGTATGC
24858228 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 59, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 60 0.22
159 210 0.76
160 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
CTTAGACAGGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCATGCTACCGATCCTG
CTGCCGCAACCCTCGGTCCGATCTGAT
Found at i:24858252 original size:26 final size:26
Alignment explanation
Indices: 24858201--24858253 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24858191 CTGATCCGAT
**
24858201 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
24858227 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
24858253 C
1 C
24858254 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24858598 original size:26 final size:26
Alignment explanation
Indices: 24858569--24858621 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24858559 CCGGTTCGAT
24858569 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
24858595 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
24858621 C
1 C
24858622 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:24859820 original size:26 final size:26
Alignment explanation
Indices: 24859791--24859843 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24859781 CCGGTCTGAT
*
24859791 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24859817 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24859843 C
1 C
24859844 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24860181 original size:26 final size:26
Alignment explanation
Indices: 24860145--24860195 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
24860135 CCGGTCCGAT
* *
24860145 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
24860171 CTTAGACTGGGGATAAACTCCGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
24860196 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:24861408 original size:26 final size:26
Alignment explanation
Indices: 24861368--24861418 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24861358 CGGTCTGATC
24861368 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
* *
24861394 TTAGACTGGGGATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCCGTATG
24861419 CCTCAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:24862464 original size:26 final size:26
Alignment explanation
Indices: 24862420--24862472 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24862410 CCGGTCCAAT
*
24862420 CTTAGACTGGGAAAAAACTCTGTATG
1 CTTAGACTGGGAAAAAACTCCGTATG
* **
24862446 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAAAACTCCGTATG
24862472 C
1 C
24862473 CTAACGCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAAAACTCCGTATG
Found at i:24863572 original size:159 final size:158
Alignment explanation
Indices: 24863166--24863605 Score: 423
Period size: 159 Copynumber: 2.8 Consensus size: 158
24863156 AGCTTTGTAT
* * * * *
24863166 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
24863231 CCAGCCGGAGAGGCAGAATGCGTAAGTCGAGGATCGACTCGGTCCCCCCTACGTGCTGTCAATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATAGACCCGGTCCCCCCTACGTGCTGCCAATCC
* ** * *
24863296 TGCTATCGTAACCCTCAGTCCGATTTGA
131 TGCTACCACAACCCTCAGTCCGACTGGA
* * * * * ** * *
24863324 CCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCTACGAAACGAGCGTGTGCCCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCA
* * * * * ** *
24863388 GCCGACCGAAGAGGCATAATACGCAAGCCGGGGATAGACCCGGTCCCTTTCTACGTGCTGCCGAT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATAGACCCGGTCCC-CCCTACGTGCTGCCAAT
* ** * * *
24863453 CCTGCTACCACAACCTTTGGTCTGGCTGGG
129 CCTGCTACCACAACCCTCAGTCCGACTGGA
* *
24863483 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
24863548 CCGGCTGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCAGATCCCCCCTGCGTGCTG
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATAGACCCGGTCCCCCCTACGTGCTG
24863606 TCGATCCTAT
Statistics
Matches: 215, Mismatches: 64, Indels: 6
0.75 0.22 0.02
Matches are distributed among these distances:
158 95 0.44
159 119 0.55
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATAGACCCGGTCCCCCCTACGTGCTGCCAATCC
TGCTACCACAACCCTCAGTCCGACTGGA
Found at i:24863673 original size:26 final size:26
Alignment explanation
Indices: 24863637--24863696 Score: 102
Period size: 26 Copynumber: 2.3 Consensus size: 26
24863627 TCAGTCTGAT
*
24863637 CTTAGACTGGGAATGAACTCCGTGTG
1 CTTAGGCTGGGAATGAACTCCGTGTG
*
24863663 CTTAGGCTGGGGATGAACTCCGTGTG
1 CTTAGGCTGGGAATGAACTCCGTGTG
24863689 CTTAGGCT
1 CTTAGGCT
24863697 AGCCGGAGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.18, C:0.20, G:0.33, T:0.28
Consensus pattern (26 bp):
CTTAGGCTGGGAATGAACTCCGTGTG
Found at i:24865005 original size:158 final size:158
Alignment explanation
Indices: 24864504--24865005 Score: 376
Period size: 158 Copynumber: 3.2 Consensus size: 158
24864494 GCTCCGTATG
*
24864504 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GGAGCGTACGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGG-GCGTGCGGGCGCTCAG
* * ** * * * * *
24864568 TCGGCTAGAGAGGTAGAATGCGCAAGTCGAGGATCAATTTGGTCCCACCCTGCGTGCTATCAATC
65 TCGGCTAGAGAGGTAAAATGCGTAAGTCGAGGATCAGCTCGGT-CCACTCTGTGTGCTACCGATC
** * * * *
24864633 CTACTGTCGCAACCCTTGGTCCGGTCCGAT
129 CTACTACCGCAACCCTCGATCCAGTTCGAT
* * * * * * * * * *
24864663 CTTAGAC-TGGGAATGAA-TTCATAAGCATAAGTCAACACATGAAACGAGCGTGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * * * * * * * * * * *
24864726 CCGAC-CGAAGAGGCATAATG-TTCAAG-CCAGGGATCGGCCCGATCGCCCT-TTTCGTGCTGCC
65 TCGGCTAG-AGAGGTAAAATGCGT-AAGTCGA-GGATCAGCTCGGTC-CACTCTGT-GTGCTACC
* * * * **
24864787 GATCCTGCTACCACAACCCTC-AGT-CAGGCTGGGC
125 GATCCTACTACCGCAACCCTCGA-TCCA-GTTCGAT
* * *
24864821 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGT
*
24864886 CGGCTAGAGAGGTAAAATGCGTAAGTCGAGGATCAGCTCGGTCCACTCTGTATGCTACCGATCCT
66 CGGCTAGAGAGGTAAAATGCGTAAGTCGAGGATCAGCTCGGTCCACTCTGTGTGCTACCGATCCT
*
24864951 ACTACCGCAACCCTCGATCCATTTCGAT
131 ACTACCGCAACCCTCGATCCAGTTCGAT
*
24864979 CTTAGAC-TAGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
24865006 TTAGACTGGG
Statistics
Matches: 245, Mismatches: 80, Indels: 37
0.68 0.22 0.10
Matches are distributed among these distances:
157 7 0.03
158 150 0.61
159 84 0.34
160 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGT
CGGCTAGAGAGGTAAAATGCGTAAGTCGAGGATCAGCTCGGTCCACTCTGTGTGCTACCGATCCT
ACTACCGCAACCCTCGATCCAGTTCGAT
Found at i:24865008 original size:26 final size:26
Alignment explanation
Indices: 24864979--24865031 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24864969 CCATTTCGAT
*
24864979 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
24865005 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
24865031 C
1 C
24865032 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:24865388 original size:26 final size:26
Alignment explanation
Indices: 24865347--24865399 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24865337 TTGGTTCGAT
24865347 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
24865373 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
24865399 C
1 C
24865400 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:24865675 original size:367 final size:363
Alignment explanation
Indices: 24864797--24866172 Score: 1404
Period size: 367 Copynumber: 3.8 Consensus size: 363
24864787 GATCCTGCTA
* * *
24864797 CCACAACCCTCAGTCAGGCT-GGGCCTTAGACA-TGGAATG-AGCTCCCTATGCCTAAGCCAACC
1 CCACAACCCTCGGTCCGGCTAGGG-CTTAGA-AGTGGAATGTA-CTCCGTATGCCTAAGCCAACC
* * * * * ** * * * * *
24864859 CACGAAACGGGCGTGCGAGCGCTCAGTCGGCTAGAGAGGTAAAATGCGTAAGTCGAGGATCAGCT
63 CACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCG-GGATCAGCC
* ** *
24864924 CGGTCCACTCTGTATGCTACCGATCCTACTACCGCAACCCTCGATCCATTTCGATCTTAGACTAG
127 CGGTCC-CCCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCAGTTCGATCTTAGACTAG
* **
24864989 GAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAAAAAACAAG
191 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAG
** * * * * *
24865054 CGTGCGGGCGCTCAGCCGGTCGGAGAGGTCGACTGGAGAGGCAAAATGCACAAGTCGGGGATCAG
256 CGTGC-GGCGCTCAGCCGACCAGAGAGGCCGGC-AGA-AGGCATAATGCACAAGTCGGGGATCAG
* * * * * * *
24865119 CCCGGTCCCTCTCTACGTGTTGCCGATCTCGCTGTCGGTCCTACTT-
318 CCCGATCCCCCTCTATGTGCTGCTGATCCCGCTATCGGTCCTA-TTG
* * * * * * *
24865165 CCATAACCCTCGATCTGACTATGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGGCTAGGGCTTAGAAGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
* * ** * * *
24865230 GAAATGAGCGTACGGGCGCTCAGCCGACGGGAGAGGCAGAATGCGCAAGTTAGGGATCGGCCAGA
66 GAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG-CCGGGATCAGCCCGG
* * * ***
24865295 TCCCCCCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAATTTGGTTCGATCTTAGACTAGGAA
130 T-CCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCAGTTCGATCTTAGACTAGGAA
*
24865360 TGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGT
194 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGT
* * * * **
24865425 GAGGCACTCAGCCGACCAGAGAGGCCGGTCAGAAAGGCATAATGCGCAAGCCAAGGATCAGCCCG
259 GCGGCGCTCAGCCGACCAGAGAGGCCGG-CAG-AAGGCATAATGCACAAGTCGGGGATCAGCCCG
*
24865490 ATCCCCCTCTATGTGCTGCTGATCCCGCTACCGGTCCTATTG
322 ATCCCCCTCTATGTGCTGCTGATCCCGCTATCGGTCCTATTG
*
24865532 CCACAACCCTCGGTCCGGCTAGGGCTTAGAAGTGGAATGTACTCTGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGGCTAGGGCTTAGAAGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
** * * **
24865597 GAAACGAGCGTGTGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGCCGTGGATTGGCCCGG
66 GAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCG-GGATCAGCCCGG
** * * * ** * *
24865662 TCCCCCGTGCGTGCTGTCGATCTTGCTGCCGCAATGCTCGATCCAG-TCTGATCTTAGACTGGGT
130 TCCCCC-TGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCAGTTC-GATCTTAGACTAGGA
* * * *
24865726 ATGAACTCCGTATGCTTAGGCTAGGGATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCG
193 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCG
* *
24865791 TGCGAGCGCTCA---G-CC---GA--TCGG-AG-AGGCATAATGCACAAGTCGGGGATCAGCCTG
258 TGCG-GCGCTCAGCCGACCAGAGAGGCCGGCAGAAGGCATAATGCACAAGTCGGGGATCAGCCCG
*
24865845 ATCCCCCT-T-TGCATGCTG-TCGATCCCGCTATCGGTCCTACTG
322 ATCCCCCTCTATG--TGCTGCT-GATCCCGCTATCGGTCCTATTG
* * * * * * * *
24865887 TCGCAACCCTCGGTTCAGCTGGGGCTTAGATGTGGAATGCACTCCATATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGGCTAGGGCTTAGAAGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
* * *
24865952 GAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCAGCCTGG
66 GAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGC-CGGGATCAGCCCGG
* ** * * * *
24866017 TCCCCCATACGTGCTGTCGATCCTACTACTGCAACCCTTGATCCGGTCCGATCTTAGACTAGGAA
130 TCCCCC-TGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCAGTTCGATCTTAGACTAGGAA
* * * * *
24866082 TGAACTCCATATGCTTAGAATGGGGATGAACTCCGTGTGCCTAAGTCAACACACGAAACGAGCGT
194 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGT
* *
24866147 GCGGACGCTCAGCCGACTAAAGAGGC
259 GCGG-CGCTCAGCCGACCAGAGAGGC
24866173 AGGATGCGTA
Statistics
Matches: 836, Mismatches: 145, Indels: 58
0.80 0.14 0.06
Matches are distributed among these distances:
353 2 0.00
354 3 0.00
355 286 0.34
356 2 0.00
357 2 0.00
358 1 0.00
359 4 0.00
361 2 0.00
362 2 0.00
364 2 0.00
365 1 0.00
366 10 0.01
367 294 0.35
368 218 0.26
369 7 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (363 bp):
CCACAACCCTCGGTCCGGCTAGGGCTTAGAAGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGATCAGCCCGGT
CCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCAGTTCGATCTTAGACTAGGAATG
AACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGC
GGCGCTCAGCCGACCAGAGAGGCCGGCAGAAGGCATAATGCACAAGTCGGGGATCAGCCCGATCC
CCCTCTATGTGCTGCTGATCCCGCTATCGGTCCTATTG
Found at i:24865972 original size:355 final size:353
Alignment explanation
Indices: 24864800--24866158 Score: 1304
Period size: 355 Copynumber: 3.8 Consensus size: 353
24864790 CCTGCTACCA
* * *
24864800 CAACCCTCAG-TCAGGCT-GGGCCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCAC
1 CAACCCTCGGTTCA-GCTAGGG-CTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAACCCAC
* * * * * ** * * * * *
24864862 GAAACGGGCGTGCGAGCGCTCAGTCGGCTAGAGAGGTAAAATGCGTAAGTCGAGGATCAGCTCGG
63 GAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCG-GGATCAGCCCGG
* ** *
24864927 TCCACTCTGTATGCTACCGATCCTACTACCGCAACCCTCGATCCA-TTTCGATCTTAGACTAGGA
127 TCC-CCCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCAGTCTCGATCTTAGACTAGGA
* **
24864991 ATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAAAAAACAAGCG
191 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCG
* *
24865056 TGCGGGCGCTCAGCCGGTCGGAGAGGTCGACTGGAGAGGCAAAATGCACAAGTCGGGGATCAGCC
256 TGC-GGCGCTCAGAC---C--AGA-GT---C-GGAGAGGCATAATGCACAAGTCGGGGATCAGCC
* * * * * * *
24865121 CGGTCCCTCTCTACGTGTTGCCGATCTCGCTGTCGGTCCTACT-TC
310 CGATCCCCCTTTGC-TGCTG-CGATCCCGCTATCGGTCCTACTGTC
* * * *
24865166 CATAACCCTC-GATCTGACTATGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCAT
1 C--AACCCTCGGTTCAG-CTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
* * ** * * *
24865230 GAAATGAGCGTACGGGCGCTCAGCCGACGGGAGAGGCAGAATGCGCAAGTTAGGGATCGGCCAGA
63 GAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG-CCGGGATCAGCCCGG
* * * ***
24865295 TCCCCCCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAATTTGGT-TCGATCTTAGACTAGGA
127 T-CCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCAGTCTCGATCTTAGACTAGGA
*
24865359 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCG
191 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCG
* * * * * **
24865424 TGAGGCACTCAGCCGACCAGAGAGGCCGGTCAGAAAGGCATAATGCGCAAGCCAAGGATCAGCCC
256 TGCGGCGCTCA---GACC--AGA-GTCGG--AG--AGGCATAATGCACAAGTCGGGGATCAGCCC
* * *
24865489 GATCCCCCTCTATG-TGCTGCTGATCCCGCTACCGGTCCTATTGCC
311 GATCCCCCT-T-TGCTGCTGC-GATCCCGCTATCGGTCCTACTGTC
* * * *
24865534 ACAACCCTCGGTCCGGCTAGGGCTTAGAAGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGA
1 -CAACCCTCGGTTCAGCTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGA
** * * **
24865599 AACGAGCGTGTGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGCCGTGGATTGGCCCGGTC
65 AACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCG-GGATCAGCCCGGTC
** * * * ** * *
24865664 CCCCGTGCGTGCTGTCGATCTTGCTGCCGCAATGCTCGATCCAGTCT-GATCTTAGACTGGGTAT
129 CCCC-TGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCAGTCTCGATCTTAGACTAGGAAT
* * * *
24865728 GAACTCCGTATGCTTAGGCTAGGGATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTG
193 GAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTG
*
24865793 CGAGCGCTCAG-CC-GA-TCGGAGAGGCATAATGCACAAGTCGGGGATCAGCCTGATCCCCCTTT
258 CG-GCGCTCAGACCAGAGTCGGAGAGGCATAATGCACAAGTCGGGGATCAGCCCGATCCCCCTTT
24865855 GCATGCTGTCGATCCCGCTATCGGTCCTACTGTC
322 GC-TGCTG-CGATCCCGCTATCGGTCCTACTGTC
* * * *
24865889 GCAACCCTCGGTTCAGCTGGGGCTTAGATGTGGAATGCACTCCATATGCCTAAGCCAACCCACGA
1 -CAACCCTCGGTTCAGCTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGA
* * *
24865954 AACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCTGGGGATCAGCCTGGTC
65 AACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGC-CGGGATCAGCCCGGTC
* ** * * *
24866019 CCCCATACGTGCTGTCGATCCTACTACTGCAACCCTTGATCCGGTC-CGATCTTAGACTAGGAAT
129 CCCC-TGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCAGTCTCGATCTTAGACTAGGAAT
* * * * *
24866083 GAACTCCATATGCTTAGAATGGGGATGAACTCCGTGTGCCTAAGTCAACACACGAAACGAGCGTG
193 GAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTG
24866148 CGGACGCTCAG
258 CGG-CGCTCAG
24866159 CCGACTAAAG
Statistics
Matches: 826, Mismatches: 135, Indels: 75
0.80 0.13 0.07
Matches are distributed among these distances:
353 2 0.00
354 2 0.00
355 289 0.35
356 2 0.00
357 2 0.00
359 3 0.00
361 2 0.00
363 2 0.00
364 3 0.00
365 3 0.00
366 8 0.01
367 279 0.34
368 217 0.26
369 10 0.01
370 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (353 bp):
CAACCCTCGGTTCAGCTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAA
ACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGATCAGCCCGGTCCC
CCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCAGTCTCGATCTTAGACTAGGAATGAA
CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGG
CGCTCAGACCAGAGTCGGAGAGGCATAATGCACAAGTCGGGGATCAGCCCGATCCCCCTTTGCTG
CTGCGATCCCGCTATCGGTCCTACTGTC
Found at i:24867319 original size:26 final size:26
Alignment explanation
Indices: 24867290--24867342 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24867280 CCAGTCCGAT
*
24867290 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
24867316 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
24867342 C
1 C
24867343 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:24867694 original size:26 final size:26
Alignment explanation
Indices: 24867658--24867710 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24867648 CCGGTCTGAT
24867658 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
24867684 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
24867710 C
1 C
24867711 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24868800 original size:159 final size:159
Alignment explanation
Indices: 24868406--24868801 Score: 469
Period size: 159 Copynumber: 2.5 Consensus size: 159
24868396 GCTCCGTATG
** *
24868406 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGC
* *
24868471 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAATCCCCCCTTGCATGTTGTCGAGCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAATCCCCCCTTGCATGCTGTCGAGCC
*
24868536 TACTGCCACAACCCTCGGTCGGGTCTAAT
131 TACTGCCACAACCCTCGGTCCGGTCTAAT
* * *
24868565 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGGGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
** * * * *** * *
24868629 CCAACCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCTGGT-CCCCTTCTGCATGCTGTTG-G
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAATCCCCCCT-TGCATGCTGTCGAG
* * **
24868692 TCTTGCTGCCACAACCCTCGGTCCGGT-TGGGGT
129 -CCTACTGCCACAACCCTCGGTCCGGTCT--AAT
* * * *
24868725 -TTAGACATTGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGC
24868789 CGGCCGGAGAGGC
66 CGGCCGGAGAGGC
24868802 CAGTTAGAGA
Statistics
Matches: 198, Mismatches: 33, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
158 8 0.04
159 188 0.95
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAATCCCCCCTTGCATGCTGTCGAGCC
TACTGCCACAACCCTCGGTCCGGTCTAAT
Found at i:24869095 original size:26 final size:26
Alignment explanation
Indices: 24869066--24869118 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24869056 CCGGTCTGAT
*
24869066 CTTAGACGGGGAATGAACTCTGTATG
1 CTTAGACGGGGAAAGAACTCTGTATG
**
24869092 CTTAGATTGGGAAAGAACTCTGTATG
1 CTTAGACGGGGAAAGAACTCTGTATG
24869118 C
1 C
24869119 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACGGGGAAAGAACTCTGTATG
Found at i:24869423 original size:368 final size:368
Alignment explanation
Indices: 24868746--24869460 Score: 914
Period size: 368 Copynumber: 1.9 Consensus size: 368
24868736 ATGAGCTCCC
* * * * ** *
24868746 TATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCCAGTTAGAG
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCGGAGAGGCCAGCCAGAA
* * * * *
24868811 AGGCATAATGCACAAGTCGGGGATTAGCCCAGTCCTCCTCTGTGTGCTGCCGATCCCGCTGCCGG
66 AGGCATAATGCACAAGTCGAGGATTAGCCCAATCCCCCTCCGTGTGCTACCGATCCCGCTGCCGG
** ** * *
24868876 TCCTGCTGTGACTGCCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGC
131 TCCTGCTGCCACAACACTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGC
* * * * * * * *
24868941 CAACCCACGAAAAGGGCGTGCGGGCGCTCAGCCGGTAGGAGAGGTAGAATGCGTAAGCCGGGGAT
196 CAACCCACGAAAAGAGCGTGCGGACGCTCAGCCGATAGAAGAGGCAAAATACGCAAGCCGGGGAT
* * * *
24869006 CGACCCGGTCCCTCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAG
261 CGACCCAGTCCCTCCTGCGTGCTACCGATCCTGCTATCGCAACCCTCGATCCAGTCCGATCTTAG
*
24869071 ACGGGGAATGAACTCTGTATGCTTAGATTGGGAAAGAACTCTG
326 ACGGGGAATGAACTCCGTATGCTTAGATTGGGAAAGAACTCTG
* * * * *
24869114 TATGCCTAAGTCAACCCAGGAAACGAGCGTGCAGGCGTTCAACCGGTCGGAGAGGCC-GACCGGA
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCGGAGAGGCCAG-CCAGA
* * *
24869178 AAGGCATAATGCACAAG-CTGAGGA-TACGTCCAATCCCCCTCCGTGTGCTATCGATCCCGCTGT
65 AAGGCATAATGCACAAGTC-GAGGATTA-GCCCAATCCCCCTCCGTGTGCTACCGATCCCGCTGC
* * * *
24869241 CGGTCCTGCTGCCACAACACTTGGTCTGACTGGGGCTTAGATGTGGAATGTACTCTGTATGCCTA
128 CGGTCCTGCTGCCACAACACTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTA
* * *
24869306 AGCCAACCCACGAAACGAGCGTGCGGACGGTCAGCCGATTGAAGAGGCAAAATACGCAAGCCGGG
193 AGCCAACCCACGAAAAGAGCGTGCGGACGCTCAGCCGATAGAAGAGGCAAAATACGCAAGCCGGG
* * * * *
24869371 GATCGGCCCAGTCCCTCCTGCGTGCTGCTGATCTTGCTATCGCAACCCTCGATCTAGTCCGATCT
258 GATCGACCCAGTCCCTCCTGCGTGCTACCGATCCTGCTATCGCAACCCTCGATCCAGTCCGATCT
*
24869436 TAGACTGGGAATGAACTCCGTATGC
323 TAGACGGGGAATGAACTCCGTATGC
24869461 CTAAGTCAAC
Statistics
Matches: 292, Mismatches: 52, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
367 4 0.01
368 288 0.99
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.20
Consensus pattern (368 bp):
TATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCGGAGAGGCCAGCCAGAA
AGGCATAATGCACAAGTCGAGGATTAGCCCAATCCCCCTCCGTGTGCTACCGATCCCGCTGCCGG
TCCTGCTGCCACAACACTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGC
CAACCCACGAAAAGAGCGTGCGGACGCTCAGCCGATAGAAGAGGCAAAATACGCAAGCCGGGGAT
CGACCCAGTCCCTCCTGCGTGCTACCGATCCTGCTATCGCAACCCTCGATCCAGTCCGATCTTAG
ACGGGGAATGAACTCCGTATGCTTAGATTGGGAAAGAACTCTG
Found at i:24870032 original size:159 final size:157
Alignment explanation
Indices: 24869675--24870037 Score: 385
Period size: 158 Copynumber: 2.3 Consensus size: 157
24869665 AGCTCCGTAT
* *
24869675 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCATGAAACAAGCGTACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACAGGCGCTCAG
* * * *
24869740 CTGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCTCCTACGTGCTATCGATCT
66 CCGACCGAAGAGGCAGAATGCACAAGCCAAGGATCGACCCGGTCCCTCCTACGTGCTATCGATCT
* * *
24869805 TGCTATAGCAACCCTCGGTCCGATCCGA
131 TGC-ACAGCAACCCTCAGTCCGAGCCGA
* * * * * * * * *
24869833 TCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTTCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACAGGCGCTCA
* * *
24869897 GCCGATCGAAGAGGCATAATGCACAAGCCAAGGATCGACCCGGTCCC-CCTTTACGTGCTGTCGG
65 GCCGACCGAAGAGGCAGAATGCACAAGCCAAGGATCGACCCGGTCCCTCC--TACGTGCTATC-G
* * *
24869961 TTTCGTTGC-CA-CAACCCTCAGTCCG-GCAGGG
127 -ATC-TTGCACAGCAACCCTCAGTCCGAGC-CGA
* *
24869992 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
24870038 TGGGTGTGCG
Statistics
Matches: 167, Mismatches: 30, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.02
158 93 0.56
159 62 0.37
160 3 0.02
161 2 0.01
162 4 0.02
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACAGGCGCTCAG
CCGACCGAAGAGGCAGAATGCACAAGCCAAGGATCGACCCGGTCCCTCCTACGTGCTATCGATCT
TGCACAGCAACCCTCAGTCCGAGCCGA
Found at i:24870143 original size:12 final size:12
Alignment explanation
Indices: 24870126--24870159 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
24870116 CCCCTAAGCC
24870126 TTCATGTGAAGT
1 TTCATGTGAAGT
24870138 TTCATGTGAAGT
1 TTCATGTGAAGT
24870150 TTCATGTGAA
1 TTCATGTGAA
24870160 CCCCCAATGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.26, C:0.09, G:0.24, T:0.41
Consensus pattern (12 bp):
TTCATGTGAAGT
Found at i:24870800 original size:26 final size:26
Alignment explanation
Indices: 24870764--24870814 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24870754 TCGGTCTGAT
*
24870764 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24870790 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
24870815 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24871087 original size:355 final size:355
Alignment explanation
Indices: 24870573--24871424 Score: 1024
Period size: 355 Copynumber: 2.4 Consensus size: 355
24870563 CATGCTGCCG
* * * *** * *
24870573 GTCCCGCTGCCACAACTCTCGATCTGGCTAATGCTTAGACATGGAATG-ACCTCCCTATGCCTAA
1 GTCCTGCTACCACAACTCTCGATCTGACTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAA
* * * *
24870637 GCCAACCCACGAAATGGGCGTGCGGGCACTCAGTCGATCGGAA-AGGC-ATAATATGCAAGTCGG
65 GCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCG-GCCGAAGAGGCGA-AATATGCAAGTCGG
* * ** * *
24870700 GGAAT-GGCGC-AGTCCCCCCTGCGTGATACCGATCCTGTTGCCGCAACCCTC-AGTTCGGTCTG
128 GG-ATCGGCCCGA-TCCCCCCTGCATGATACCGATCCTACTGCCACAACCCTCGA-TCCGGTCTG
* * * *
24870762 ATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATC-CCTAAGTCAA
190 ATCCTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTA-CGCCTAAGTCAA
* * * * *
24870826 CCCACGAAACGAGTGTGCAGGCGCTCAGCCGGTCGGAGAGGCCTAATACGCAAGCCGGGGATCGA
254 CCCACGAAACGAGCGTACAGGCGCTCAACCGGTCGGAGAGGCATAATACGCAAGCCGGGGATCAA
** *
24870891 CCTAG-TCCCCCTCTGCTTGCTGTCGATCCCGCTGTC-
319 CC-AGATCCCCCTCAACGTGCTGTCGATCCCGCTGTCA
* *
24870927 GATCCTGCTACCACAAC-CTTCGGTCTGACTGTGGCTTAGACGTGGAATGTACTCCGTATGCCTA
1 G-TCCTGCTACCACAACTC-TCGATCTGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTA
** *
24870991 AGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCGAAGAGGCGGAATATGCAAGTCGGG
64 AGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGGCCGAAGAGGCGAAATATGCAAGTCGGG
* *
24871056 GATCGGCCCGATCCCCCCTGCATGCTACCGATCCTACTGCCACAACCCTCGATCCGGTTTGATCC
129 GATCGGCCCGATCCCCCCTGCATGATACCGATCCTACTGCCACAACCCTCGATCCGGTCTGATCC
* *
24871121 TAGACTAGGAATGAACTCCATATGCTTCGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCAT
194 TAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCAC
* * * * * *
24871186 GAAACGAGCGTACGGGTGCTCAACCGGTCGGAGAGGCATAATGCGTAAGTCGGGGATCAACCCGA
259 GAAACGAGCGTACAGGCGCTCAACCGGTCGGAGAGGCATAATACGCAAGCCGGGGATCAACCAGA
* * *
24871251 TCCCCCTCAACGTGCTGTTGATCTCGTTGTCA
324 TCCCCCTCAACGTGCTGTCGATCCCGCTGTCA
* *
24871283 GTCCTGCTACCATAACTCTCGATCTGACTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAG
1 GTCCTGCTACCACAACTCTCGATCTGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAG
** * **
24871348 CCAACCCATAAAATGAGAGTGCGGGCACTCAGCCGGCC-AGAGAGGCGAAATGCGCAAGTCGGGG
66 CCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGGCCGA-AGAGGCGAAATATGCAAGTCGGGG
*
24871412 ATCAGCCCGATCC
130 ATCGGCCCGATCC
24871425 ACCTCTACGT
Statistics
Matches: 425, Mismatches: 60, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
354 11 0.03
355 409 0.96
356 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (355 bp):
GTCCTGCTACCACAACTCTCGATCTGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAG
CCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGGCCGAAGAGGCGAAATATGCAAGTCGGGGA
TCGGCCCGATCCCCCCTGCATGATACCGATCCTACTGCCACAACCCTCGATCCGGTCTGATCCTA
GACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCACGA
AACGAGCGTACAGGCGCTCAACCGGTCGGAGAGGCATAATACGCAAGCCGGGGATCAACCAGATC
CCCCTCAACGTGCTGTCGATCCCGCTGTCA
Found at i:24871460 original size:171 final size:171
Alignment explanation
Indices: 24871161--24871563 Score: 475
Period size: 171 Copynumber: 2.4 Consensus size: 171
24871151 CTGGGGATGA
* * * * * *
24871161 ACTCCGTACGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAACCGGTCGGAGAGGCATA
1 ACTCCGTATGCCTAAGCCAACCCATGAAATGAGAGTGCGGGTGCTCAACCGGTCAGAGAGGCATA
* * *** * ** **
24871226 ATGCGTAAGTCGGGGATCAACCCGATCCCCCTCAACGTGCTGTTGATCTCGTTGTCAGTCCTGCT
66 ATGCGCAAGTCGGGGATCAACCCGATCCACCTCAACGTGCTGCCAATCCCACTCCCAGTCCTGCT
* * *
24871291 ACCATAACTCTCGATCTGACTGGGGCTTAGATGTGGAATGT
131 ACCACAACTCTCGATCCGACTGGGGCTTAGACGTGGAATGT
* ** * *
24871332 ACTCCGTATGCCTAAGCCAACCCATAAAATGAGAGTGCGGGCACTCAGCCGGCCAGAGAGGCGA-
1 ACTCCGTATGCCTAAGCCAACCCATGAAATGAGAGTGCGGGTGCTCAACCGGTCAGAGAGGC-AT
* * *
24871396 AATGCGCAAGTCGGGGATCAGCCCGATCCACCTCTACGTGCTGCCAATCCCACTCCCGGTCCTGC
65 AATGCGCAAGTCGGGGATCAACCCGATCCACCTCAACGTGCTGCCAATCCCACTCCCAGTCCTGC
* * ** *
24871461 TACCACAACTCTTGGTCCGGTTGGGGTTTAGACGTGGAATGT
130 TACCACAACTCTCGATCCGACTGGGGCTTAGACGTGGAATGT
* * *
24871503 ACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGTGCTCAACCGGTCAGAGAGG
1 ACTCCGTATGCCTAAGCCAACCCATGAAATGAGAGTGCGGGTGCTCAACCGGTCAGAGAGG
24871564 TAGAATGTGC
Statistics
Matches: 191, Mismatches: 40, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
171 190 0.99
172 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (171 bp):
ACTCCGTATGCCTAAGCCAACCCATGAAATGAGAGTGCGGGTGCTCAACCGGTCAGAGAGGCATA
ATGCGCAAGTCGGGGATCAACCCGATCCACCTCAACGTGCTGCCAATCCCACTCCCAGTCCTGCT
ACCACAACTCTCGATCCGACTGGGGCTTAGACGTGGAATGT
Found at i:24871674 original size:26 final size:26
Alignment explanation
Indices: 24871645--24871697 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24871635 TCGGTCTGAT
24871645 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
24871671 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
24871697 C
1 C
24871698 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:24872372 original size:26 final size:26
Alignment explanation
Indices: 24872336--24872386 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
24872326 CCGGTTCAAT
24872336 CTTAGACTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCTGTATA
*
24872362 CTTAGACTGGGTATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
24872387 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATA
Found at i:24873601 original size:26 final size:26
Alignment explanation
Indices: 24873558--24873610 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24873548 CCAGTCTGAT
24873558 CTTAGACTGGAAAAGAACTCCGTATG
1 CTTAGACTGGAAAAGAACTCCGTATG
** *
24873584 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAAAGAACTCCGTATG
24873610 C
1 C
24873611 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAAAGAACTCCGTATG
Found at i:24874778 original size:26 final size:26
Alignment explanation
Indices: 24874727--24874779 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24874717 GGCTCAAAAT
* *
24874727 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
24874753 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
24874779 C
1 C
24874780 CTAGGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24875257 original size:26 final size:26
Alignment explanation
Indices: 24875228--24875280 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24875218 CTGGTTTGAT
24875228 CTTAGACTG-GGAATGAACTCTGTATG
1 CTTAGACTGAGG-ATGAACTCTGTATG
24875254 CTTAGACTGAGGATGAACTCTGTATG
1 CTTAGACTGAGGATGAACTCTGTATG
24875280 C
1 C
24875281 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCTGTATG
Found at i:24875620 original size:26 final size:26
Alignment explanation
Indices: 24875591--24875643 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24875581 CCGGTCTGAT
*
24875591 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24875617 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24875643 C
1 C
24875644 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24876375 original size:26 final size:26
Alignment explanation
Indices: 24876324--24876376 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24876314 GGCTCAAAAT
* *
24876324 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
24876350 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
24876376 C
1 C
24876377 CTAGGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24876854 original size:26 final size:26
Alignment explanation
Indices: 24876825--24876877 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24876815 CTGGTTTGAT
24876825 CTTAGACTG-GGAATGAACTCTGTATG
1 CTTAGACTGAGG-ATGAACTCTGTATG
24876851 CTTAGACTGAGGATGAACTCTGTATG
1 CTTAGACTGAGGATGAACTCTGTATG
24876877 C
1 C
24876878 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCTGTATG
Found at i:24877217 original size:26 final size:26
Alignment explanation
Indices: 24877188--24877240 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24877178 CCGGTCTGAT
*
24877188 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24877214 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24877240 C
1 C
24877241 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24877950 original size:26 final size:26
Alignment explanation
Indices: 24877921--24877973 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24877911 GGCTCAAAAT
*
24877921 CTTAGAC-TGGGAATGAGCTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
24877947 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
24877973 C
1 C
24877974 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:24878248 original size:159 final size:158
Alignment explanation
Indices: 24877946--24878364 Score: 483
Period size: 159 Copynumber: 2.6 Consensus size: 158
24877936 AGCTCCATAT
* * *
24877946 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAATGAGCATTCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTACGGGCGTTCAG
* *
24878011 CCAGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCCTACGTGCTGTCGATC
65 CCAGGCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCACCCCCTACGTGCTGTCGATC
*
24878076 CTGCTCCCGCAACCCTCGGTCTGG-TCCGA
130 CTGCTCCCACAACCCTCGGTCTGGCT-CGA
* * * *
24878105 TCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTACGGGCGTTCA
* * * * *
24878169 GCC-GGCCGA-AGCGACATAATGCGCAAGTCGAGGATCGACCCGGTCACCCTCTACGTGCTGTCT
64 GCCAGGCAGAGAG-G-CAGAATGCGCAAGCCGAGGATCGACCCGGTCACCCCCTACGTGCTGTCG
* * *
24878232 ATCC-GACTGCCACAACCCTCGGTCTGGCTGGG
127 ATCCTG-CTCCCACAACCCTCGGTCTGGCTCGA
* * * *
24878264 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTACGGGCGTTC-A
* *
24878329 -CC-GGTCAGAGAGGCAGAATGCGTAAGCCGGGGATCG
64 GCCAGG-CAGAGAGGCAGAATGCGCAAGCCGAGGATCG
24878365 GTTCGATCCC
Statistics
Matches: 218, Mismatches: 32, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
157 2 0.01
158 7 0.03
159 199 0.91
160 8 0.04
161 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTACGGGCGTTCAGC
CAGGCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCACCCCCTACGTGCTGTCGATCC
TGCTCCCACAACCCTCGGTCTGGCTCGA
Found at i:24878452 original size:26 final size:26
Alignment explanation
Indices: 24878423--24878475 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24878413 CCAGTTCTAT
24878423 CTTAGACTAGCAATGAACTCCATATG
1 CTTAGACTAGCAATGAACTCCATATG
* **
24878449 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGCAATGAACTCCATATG
24878475 C
1 C
24878476 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGCAATGAACTCCATATG
Found at i:24879021 original size:159 final size:157
Alignment explanation
Indices: 24878616--24879083 Score: 408
Period size: 156 Copynumber: 3.0 Consensus size: 157
24878606 CTACCAAAAC
* * * *
24878616 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCAGTTCGACTAGGGCTTAGACATGGAATG-ACTCCGTATGCCTAAGCCAACCCAT
* * * * * * **
24878681 GAAACAAGCTTGCGGGCACTCAGTCGATCGGAGAGGCAGAATGCGCAAGTCAGGGA-TCGATTCG
65 GAAACAAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTAG-CCCG
**
24878745 ATCCCC-CTGTGTGCTGTCGATCCTGCTG
129 ATCCCCTCTGTGTGCTGTCGATCCCACTG
* ** * * * ** * * **
24878773 ACGTAACCCTCAGTCTGGTC-CGATCTT--ATATGGGAATGAACTCCGTATGCATAAGTGAACCC
1 CCACAACCCTCAGT-TCGACTAGGGCTTAGACAT-GGAATG-ACTCCGTATGCCTAAGCCAACCC
* * * * * * * *
24878835 ACGAAATAAGCGTGCGGGTGTTGAGCCGGTCGAAGAGGCATAATGCGTAAGCCAGGGATTAGCCC
63 ATGAAACAAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTAGCCC
* *
24878900 GATCCCCCTCTGTGTGTTGTCGGTCCCACTG
128 GAT-CCCCTCTGTGTGCTGTCGATCCCACTG
* *
24878931 CCACAACCCTCTGTTCGACTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCAGTTCGACTAGGGCTTAGACATGGAATGA-CTCCGTATGCCTAAGCCAACCCAT
** * * * *
24878996 GAAACGGGCGTGCGGGCGCTCAGCCGG-CTGGAGAGGCAGAATGTGCAAGCCGGGGATCAACCCG
65 GAAACAAGCGTGCGGGCGCTCAGCCGGTC-GGAGAGGCAGAATGCGCAAGCCAGGGATTAGCCCG
* *
24879060 GTCCCCTCTGCGTGCTGTCGATCC
129 ATCCCCTCTGTGTGCTGTCGATCC
24879084 TTCTATCACA
Statistics
Matches: 234, Mismatches: 67, Indels: 19
0.73 0.21 0.06
Matches are distributed among these distances:
155 3 0.01
156 75 0.32
157 23 0.10
158 55 0.24
159 75 0.32
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
CCACAACCCTCAGTTCGACTAGGGCTTAGACATGGAATGACTCCGTATGCCTAAGCCAACCCATG
AAACAAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTAGCCCGAT
CCCCTCTGTGTGCTGTCGATCCCACTG
Found at i:24879142 original size:26 final size:26
Alignment explanation
Indices: 24879113--24879165 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24879103 CCGATCCAAT
*
24879113 CTTAGACTGG-GAATGAGCTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
24879139 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
24879165 C
1 C
24879166 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:24879517 original size:26 final size:26
Alignment explanation
Indices: 24879481--24879533 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24879471 CTGATCCAAT
*
24879481 CTTATACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* * *
24879507 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
24879533 C
1 C
24879534 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:24880240 original size:26 final size:26
Alignment explanation
Indices: 24880203--24880254 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24880193 GCTCAAAATA
*
24880203 TTAGACTGGGAATGAGCCCCGTATGC
1 TTAGACTGGGAATGAACCCCGTATGC
*
24880229 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACCCCGTATGC
24880255 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAATGAACCCCGTATGC
Found at i:24880572 original size:159 final size:158
Alignment explanation
Indices: 24880227--24880591 Score: 391
Period size: 159 Copynumber: 2.3 Consensus size: 158
24880217 AGCCCCGTAT
24880227 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCA-GTGGGCACTCAG
* * * *
24880292 CCGGCCTGAGAGGCAGAATGCGCAAGTCGGGGATCGATCCGGTCCCCCCCTGCATGCTGTTGATC
65 CCAGCCTGAGAGGCAGAATGCGCAAGCCAGGGATCGATCCGGTCCCCCCCTGCATGCTGTCGATC
* * *
24880357 CTACTGCCGCAACCCTCGGTTCGGTATGG
130 CCACTGCCACAACCCTCGGTTCGGTAGGG
* * * * * * *
24880386 TCTTAGAC-TCAGAATGAACTCCGTATGCATAAGTCAACCCACGAAAGGAGC-GTGCGGCTGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCAGTG-GGC-ACTC
* * * *
24880449 AGCCAGTC-GAAGAGGCATAATGCGTAAGCCAGGGATCGA-CCGGATCCCCCTCTGCATGCTGTC
63 AGCCAGCCTG-AGAGGCAGAATGCGCAAGCCAGGGATCGATCCGG-TCCCCCCCTGCATGCTGTC
* *
24880512 GGTCCCGCTGCCACAACCCTCGG-TCTGGCT-GGG
126 GATCCCACTGCCACAACCCTCGGTTC-GG-TAGGG
* * * * *
24880545 GCTTAGACATGGACTGAGCTCCCTATGCCTAAGCCAACACATGAAAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
24880592 AGGAATGCAG
Statistics
Matches: 168, Mismatches: 30, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.02
158 11 0.07
159 152 0.90
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCAGTGGGCACTCAGC
CAGCCTGAGAGGCAGAATGCGCAAGCCAGGGATCGATCCGGTCCCCCCCTGCATGCTGTCGATCC
CACTGCCACAACCCTCGGTTCGGTAGGG
Found at i:24880733 original size:26 final size:26
Alignment explanation
Indices: 24880704--24880755 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
24880694 CTGGTCTGAT
* *
24880704 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24880730 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24880756 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24881111 original size:26 final size:26
Alignment explanation
Indices: 24881070--24881122 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24881060 CCGATCCGAT
*
24881070 CTTAGACTGGAAATGAACTCCTTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
24881096 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
24881122 C
1 C
24881123 CTAAGACAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:24882209 original size:159 final size:160
Alignment explanation
Indices: 24881809--24882260 Score: 446
Period size: 160 Copynumber: 2.8 Consensus size: 160
24881799 CCGTATCCTT
* * * * *
24881809 AGACATGGAATGAACTCCTTATGCCTAAGCCAACCCAGGAAACGAGCGTACGGGCACTCAACCGG
1 AGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGA
* * *
24881874 TCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACTTGATCCCCCCCTGCGTGCTGTCGATCCTGC
66 TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTTGATCCCCCCCTGCGTGCTATCGATCCGGC
* ** * * *
24881939 TACCACAAACCCTCAGTTTGGTCCGATCTT
131 TACCACAAACCCTCAGATCCGACCGAGCTG
* * * * *
24881969 AGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCGCGAAACGAGCGTGCAGGCGC-CGAGCC
1 AGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC-AACC
* * * * * * ** * *
24882032 GACCGAAGAGGCATAATGCTCAAGCCGAGGATCGGCTTGATCCCCCGTTGTGTGCTATCGGTCCG
64 GATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTTGATCCCCCCCTGCGTGCTATCGATCCG
* * *
24882097 GCTGCCAC-AACCCTC-GATCCGACTGGGGCTG
129 GCTACCACAAACCCTCAGATCCGAC-CGAGCTG
* * * * *
24882128 AGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAATCGA
1 AGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGA
* * * * * * *
24882193 TTGGAGAAGCAGAATGCGCAAGCCGGGGATCGACTCGAT-CCCTCCTACGTGCTGTCGATCCTGC
66 TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTTGATCCCCCCCTGCGTGCTATCGATCCGGC
24882257 TACC
131 TACC
24882261 GTAACTCTCG
Statistics
Matches: 227, Mismatches: 60, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
158 24 0.11
159 93 0.41
160 110 0.48
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (160 bp):
AGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGA
TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTTGATCCCCCCCTGCGTGCTATCGATCCGGC
TACCACAAACCCTCAGATCCGACCGAGCTG
Found at i:24882657 original size:26 final size:26
Alignment explanation
Indices: 24882628--24882680 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24882618 CCAATCCGAT
*
24882628 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
24882654 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
24882680 C
1 C
24882681 CTAAGTCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24883707 original size:157 final size:159
Alignment explanation
Indices: 24883375--24883731 Score: 357
Period size: 157 Copynumber: 2.3 Consensus size: 159
24883365 AGCTCCATAT
* * * *
24883375 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAATCCATGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATAAAACGAACGTGCGGGCGCTCAG
* * * * *
24883440 CCGACCGGAGAGGCAGAATGCGCAAGCCTGGGATCGACCCCGTCCTCCCTTGTGTGCTGTCGATC
66 CCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCCGTCCTCCCTTGCGTGCTGCCGATC
* ** *
24883505 CTGCTACCGTAACCCTCTGTCCAATCCGA
131 CCGCTACCACAACCCTCGGTCCAATCCGA
* * * *
24883534 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAATGAACGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCATAAAACGAACGTGCGGGCGCTCA
* * * * * * *
24883598 GCTGGCCGAAGA-GCATAATGCATAAGCCAGGGATCGGCCCGGT-C-CCCTCTGCGTGCTGCCGG
65 GCCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCCGTCCTCCCT-TGCGTGCTGCCGA
* * * *
24883660 TCCCGCTGCCACAACCCTCGGTCC-AGCTTGG
129 TCCCGCTACCACAACCCTCGGTCCAATC-CGA
* * *
24883691 GCTTAGACATGGAATGAGCTCCCTATGCCTAA-CCAAACCCA
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCC-AACCCA
24883732 CGAAACGGGT
Statistics
Matches: 160, Mismatches: 33, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
156 7 0.04
157 63 0.39
158 27 0.17
159 63 0.39
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATAAAACGAACGTGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCCGTCCTCCCTTGCGTGCTGCCGATC
CCGCTACCACAACCCTCGGTCCAATCCGA
Found at i:24885728 original size:26 final size:26
Alignment explanation
Indices: 24885699--24885751 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24885689 CCGGTCTGAT
*
24885699 CTTAGA-CTGGGAATGAACTCCGTATG
1 CTTAGATC-GGGAATAAACTCCGTATG
*
24885725 CTTAGATCGGGGATAAACTCCGTATG
1 CTTAGATCGGGAATAAACTCCGTATG
24885751 C
1 C
24885752 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGATCGGGAATAAACTCCGTATG
Found at i:24886828 original size:26 final size:26
Alignment explanation
Indices: 24886799--24886851 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24886789 GGCTCAAAAT
*
24886799 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
24886825 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
24886851 C
1 C
24886852 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:24887329 original size:26 final size:26
Alignment explanation
Indices: 24887300--24887352 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24887290 TCGGTCCGAT
*
24887300 CTTA-AATGGGGAATTAACTCCGTATG
1 CTTAGAATGGGG-ATGAACTCCGTATG
*
24887326 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGGATGAACTCCGTATG
24887352 C
1 C
24887353 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGGATGAACTCCGTATG
Found at i:24887513 original size:26 final size:26
Alignment explanation
Indices: 24887484--24887539 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
24887474 CCGATACGAT
24887484 CTTAGACTAGAAATGAACTCCGTAGG
1 CTTAGACTAGAAATGAACTCCGTAGG
** * *
24887510 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGAAATGAACTCCGTAGG
24887536 CTTA
1 CTTA
24887540 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTAGG
Found at i:24887589 original size:184 final size:184
Alignment explanation
Indices: 24887247--24887608 Score: 458
Period size: 184 Copynumber: 2.0 Consensus size: 184
24887237 GATTGGCCCA
* * * * * * * * *
24887247 GTCCCCCCTGCATGCTGCCGATCCTGCTGCCGTAACCCTCGGTTCGGTCCGATCTTAAATGGGGA
1 GTCCCCCCTGCATGCTACCGATCCTGCTACCGCAACCCTCGATCCGATACGATCTTAAATGAGAA
* * *
24887312 ATTAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAACG
66 ATGAACTCCGTAGGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAACG
* ** ** * *
24887377 TGCGGGCGCTCAGTCGGTCGAGGAGGCAGAATGCGTAAGCTGGGGATCGACCTG
131 TGCAGGCGCTCAACCGACCGAGGAGGCAGAATGCGCAAGCCGGGGATCGACCTG
* *
24887431 GTCCCCCCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGATCCGATACGATCTTAGACT-AGA
1 GTCCCCCCTGCATGCTACCGATCCTGCTACCGCAACCCTCGATCCGATACGATCTTA-AATGAGA
* * *
24887495 AATGAACTCCGTAGGCTTAGACTAGGGATGAACTCTGTATGCTTAAGTCAACCCACAAAACGAGC
65 AATGAACTCCGTAGGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAAC
* *
24887560 GTGTAGGCGCTCAACCGACC-AGAGAGGCAGGATGCGCAAGCCGGGGATC
130 GTGCAGGCGCTCAACCGACCGAG-GAGGCAGAATGCGCAAGCCGGGGATC
24887609 AAACGGGTGG
Statistics
Matches: 150, Mismatches: 26, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
183 2 0.01
184 146 0.97
185 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (184 bp):
GTCCCCCCTGCATGCTACCGATCCTGCTACCGCAACCCTCGATCCGATACGATCTTAAATGAGAA
ATGAACTCCGTAGGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAACG
TGCAGGCGCTCAACCGACCGAGGAGGCAGAATGCGCAAGCCGGGGATCGACCTG
Found at i:24887972 original size:26 final size:26
Alignment explanation
Indices: 24887933--24887983 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
24887923 CTCAAAATCC
* *
24887933 TAGATTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
24887959 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
24887984 CTAAGTCATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:24889197 original size:26 final size:26
Alignment explanation
Indices: 24889168--24889221 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
24889158 AGTCTAATCT
24889168 TAGACT-GGGAATGAACTCCATATGCC
1 TAGACTAGGG-ATGAACTCCATATGCC
*
24889194 TAGACTAGGGATGAACTCCGTATGCC
1 TAGACTAGGGATGAACTCCATATGCC
24889220 TA
1 TA
24889222 ATTCAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGACTAGGGATGAACTCCATATGCC
Found at i:24889561 original size:26 final size:26
Alignment explanation
Indices: 24889532--24889584 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24889522 CTGGTGCGAT
*
24889532 CTTAGACT-GGGAGTGAACTCTGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
24889558 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
24889584 C
1 C
24889585 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:24889635 original size:366 final size:367
Alignment explanation
Indices: 24888839--24889635 Score: 867
Period size: 366 Copynumber: 2.2 Consensus size: 367
24888829 GGTCCGACCT
* * * * *
24888839 TAGACT-GGGAATGAACTCCGTATGCGTAAGTTAACCCATGAAACGAGCATG-GGAGCGCTCAGC
1 TAGACTAGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGG-GCGCTCAGC
* * * * * * * *
24888902 CGACCGGAGAGGCCGATCGAAGAGGCATAACGTGCAA-GTCGGGGATCAGCCCGGT--CCC-CT-
64 CGACCAGAGAGGCCGACCGAAAAGGCATAACGCGTAACCT-GAGGATCAGCTCGGTCCCCCTCTG
* * *
24888962 C-TG---T-G-T---GCTGTCGGTCCTGCTGCCACAACCCTCGCTCTGATTGGGGGTTAGACATG
128 CGTGCTATCGATCCCGCTGTCGGTCCTACTGCCACAACCCTCGCTCTGACTGGGGCTTAGACATG
* *
24889018 GAATGTACTCTGTATGCCTAAGCCAAGCCACAAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGA
193 GAATGTACTCCGTATGCCTAAGCCAACCCACAAAACGA-CGTGCGGGCGCTCAGCCAGCCAGAGA
* * * * * * *
24889083 GGCAGAATGTACAAGCCGGGGATCGACCTGGTCCCCCCTGCGTGTTACCGATCCTGCTGCCGCAA
257 GACAGAATGCACAAGCCAGAGATCGACCCGGTCCCCCCTACGTGCTACCGATCCTGCTGCCGCAA
*
24889148 CCCTCGATCCAGTCTAATCTTAGACTGGGAATGAACTCCATATGCC
322 CCCTCAATCCAGTCTAATCTTAGACTGGGAATGAACTCCATATGCC
* * * * *
24889194 TAGACTAGGGATGAACTCCGTATGCCTAATTCAACCCACGAAACGAGCGTGCGGGCGCTTAGTCT
1 TAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCG
**
24889259 ACTGGAGAGGCCGACCGAAAAGGCATAACGCGTAACCTGAGGATCAGCTCGGTCCCCCTCTGCGT
66 ACCAGAGAGGCCGACCGAAAAGGCATAACGCGTAACCTGAGGATCAGCTCGGTCCCCCTCTGCGT
* * *
24889324 GCTATCGATCCCGCTGTTGGTCCTACTGCCACAACCCTCAGTTC-GGCTGGGGCTTAGACATGGA
131 GCTATCGATCCCGCTGTCGGTCCTACTGCCACAACCCTC-GCTCTGACTGGGGCTTAGACATGGA
** * * ***
24889388 ATGTACTCCGTATGCCTAAGCCAACCCATGAAACGA-GTGTGGGCGCTCAGCCGGTTGGAGAGAC
195 ATGTACTCCGTATGCCTAAGCCAACCCACAAAACGACGTGCGGGCGCTCAGCCAGCCAGAGAGAC
** * * ** *
24889452 AGAATGCGTAAGCCAGAGATCGGCCCGGTCCCCCCTATGTGCTGTCGATCCTGCTGTCGCAACCC
260 AGAATGCACAAGCCAGAGATCGACCCGGTCCCCCCTACGTGCTACCGATCCTGCTGCCGCAACCC
** * * ** *
24889517 TCAATCTGGTGC-GATCTTAGACTGGGAGTGAACTCTGTATGCT
325 TCAATCCAGT-CTAATCTTAGACTGGGAATGAACTCCATATGCC
* * *
24889560 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAACGTGCGGGTGCTCAGCCG
1 TAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCG
24889625 ACCAGAGAGGC
66 ACCAGAGAGGC
24889636 AGGATGCGCA
Statistics
Matches: 361, Mismatches: 63, Indels: 25
0.80 0.14 0.06
Matches are distributed among these distances:
355 93 0.26
356 6 0.02
357 3 0.01
358 2 0.01
359 1 0.00
360 2 0.01
363 1 0.00
364 1 0.00
365 1 0.00
366 173 0.48
367 1 0.00
368 74 0.20
369 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (367 bp):
TAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCG
ACCAGAGAGGCCGACCGAAAAGGCATAACGCGTAACCTGAGGATCAGCTCGGTCCCCCTCTGCGT
GCTATCGATCCCGCTGTCGGTCCTACTGCCACAACCCTCGCTCTGACTGGGGCTTAGACATGGAA
TGTACTCCGTATGCCTAAGCCAACCCACAAAACGACGTGCGGGCGCTCAGCCAGCCAGAGAGACA
GAATGCACAAGCCAGAGATCGACCCGGTCCCCCCTACGTGCTACCGATCCTGCTGCCGCAACCCT
CAATCCAGTCTAATCTTAGACTGGGAATGAACTCCATATGCC
Found at i:24890283 original size:26 final size:26
Alignment explanation
Indices: 24890254--24890306 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24890244 GGCTCAAAAT
*
24890254 CTTAGAC-TGGGAATGAGCTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
24890280 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
24890306 C
1 C
24890307 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:24891396 original size:11 final size:11
Alignment explanation
Indices: 24891376--24891408 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
24891366 CGGTTAGGCT
*
24891376 CTCCGGCGATG
1 CTCCGACGATG
24891387 CTCCGACGATG
1 CTCCGACGATG
24891398 CTCCGACGATG
1 CTCCGACGATG
24891409 GTGCCCCAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.15, C:0.36, G:0.30, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:24891857 original size:158 final size:157
Alignment explanation
Indices: 24891503--24891865 Score: 389
Period size: 158 Copynumber: 2.3 Consensus size: 157
24891493 GAGCTCGTGT
* * * *
24891503 GCTTAGACATGGAATGAACT-CTGTATGCCTAAGCCAACCCATGGAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCT-TATGCC-AAGCCAACCCATGAAACGAACATGCGGGCCCTCA
* *
24891567 GTCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCGCTGCGTGCTGTCGATC
64 GCCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCGCTGCGTGCTGCCGATC
*
24891632 CTACTACCACAACCCTTGGTCCGGTCTGA
129 CCACTACCACAACCCTTGGTCCGGTCTGA
* * * * * *
24891661 TCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAACATGCGGGCCCTGA
1 GCTTAGACAT-GGAATGAACTCCTTATGC-CAAGCCAACCCATGAAACGAACATGCGGGCCCTCA
* * *
24891725 GCC-GACCGAAGAGGCATAATGCGCAAGCTGGGGATCGGGC-CGGTCCCC-CTTTGCGTGCTGCC
64 GCCAG-CCGAAGAGGCAGAATGCGCAAGCCGGGGATC-GACTCGGTCCCCGC--TGCGTGCTGCC
* * ** *
24891787 -AGTCCCGCTGCCACAACCCTTGGTTTGG-CTAGG
125 GA-TCCCACTACCACAACCCTTGGTCCGGTCT-GA
*
24891820 GCTTAGACATGGAATGAGCTCCTTATGCCAAGCCAACCCATGAAAC
1 GCTTAGACATGGAATGAACTCCTTATGCCAAGCCAACCCATGAAAC
24891866 AGGTGTGCAG
Statistics
Matches: 168, Mismatches: 27, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
157 3 0.02
158 107 0.64
159 57 0.34
160 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCTTATGCCAAGCCAACCCATGAAACGAACATGCGGGCCCTCAGC
CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGGTCCCCGCTGCGTGCTGCCGATCCC
ACTACCACAACCCTTGGTCCGGTCTGA
Found at i:24893623 original size:26 final size:26
Alignment explanation
Indices: 24893584--24893660 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
24893574 GGTCTGATCT
* *
24893584 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGGATGAACTTCGTATGCA
*
24893610 TAGACTGGGGATGAACTTCGTATGCT
1 TAGACTGGGGATGAACTTCGTATGCA
24893636 TAGACTGGGGATGAACTTCGTATGC
1 TAGACTGGGGATGAACTTCGTATGC
24893661 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (26 bp):
TAGACTGGGGATGAACTTCGTATGCA
Found at i:24893955 original size:370 final size:369
Alignment explanation
Indices: 24893322--24894004 Score: 849
Period size: 370 Copynumber: 1.8 Consensus size: 369
24893312 GCTGAGCCGA
* * * * * *
24893322 TCGGAGAGGCATAATGCGCAAGCTGGGGATCAGCCTGGTCCCTCTCTGCATGCTACCGATCTCAC
1 TCGGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTACCGATCCCAC
* * * *
24893387 TCCGGTCCTACTGCCACAACCCTTGATCCAGCTGGGGCTTAGAGGTGGAATGTACTCTGTATGCC
66 TCCGGTCCTACTGCCACAACCCTCGATCCAGCTGGGGCTTAGACGTGAAATGTACTCCGTATGCC
* * ** * *
24893452 TAAGCCAACCCACGAAACTAGCGTACGGGTGCTCAACCGGCCTGAGAGGCAGAATGAGCAAGCCG
131 TAAGCCAACCCACGAAACGAGCATACGGGCACTCAACCGACCAGAGAGGCAGAATGAGCAAGCCG
* * * * * * *
24893517 AGGATCAGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGTTACCGCAACCCTCGATTCGGTCTGAT
196 AGGATCAGCCCGATCCCCCTTACGAGCTGCCGATCCTGTTACCGCAACCCTCAATTCGATCCGAT
*
24893582 CTTAGACTGGGAATGAACTCCGTATGCATAGACTGGGGATGAACT-TCGTATGCTTAGACTGGGG
261 CTTAGACTGGGAATGAACTCCGTATGCATAGACTAGGGATGAACTCT-GTATGCTTAGACTGGGG
24893646 ATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG
325 ATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG
* * * * *
24893691 TCGGAGAGGCATAATGCATAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCTATCCCGC
1 TCGGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTACCGATCCCAC
* *
24893756 TATCGGTCC-AGCTGCCACAACCCTCGGTCC-GACTGGGGCTTAGACGTGAAATGTACTCCGTAT
66 T-CCGGTCCTA-CTGCCACAACCCTCGATCCAG-CTGGGGCTTAGACGTGAAATGTACTCCGTAT
* * * * *
24893819 GCCTAAGTCAACCCACGGAACGAGCATGCGGGCACTCAGCCGACCAGAGAGGTAGAATGCA-CAA
128 GCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAACCGACCAGAGAGGCAGAATG-AGCAA
* * ** * * *
24893883 GTCGCGGATTGGCCTGATCCCTCC-TACGAGTTGCCGATCCTG-TAGTCGCAACCCTCAA-TCTG
192 GCCGAGGATCAGCCCGATCCC-CCTTACGAGCTGCCGATCCTGTTA-CCGCAACCCTCAATTC-G
*
24893945 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCTGTATGC
254 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAGACTAGGGATGAACTCTGTATGC
24894005 CTAAGTCAAC
Statistics
Matches: 262, Mismatches: 44, Indels: 15
0.82 0.14 0.05
Matches are distributed among these distances:
369 61 0.23
370 197 0.75
371 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (369 bp):
TCGGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTACCGATCCCAC
TCCGGTCCTACTGCCACAACCCTCGATCCAGCTGGGGCTTAGACGTGAAATGTACTCCGTATGCC
TAAGCCAACCCACGAAACGAGCATACGGGCACTCAACCGACCAGAGAGGCAGAATGAGCAAGCCG
AGGATCAGCCCGATCCCCCTTACGAGCTGCCGATCCTGTTACCGCAACCCTCAATTCGATCCGAT
CTTAGACTGGGAATGAACTCCGTATGCATAGACTAGGGATGAACTCTGTATGCTTAGACTGGGGA
TGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG
Found at i:24893981 original size:26 final size:26
Alignment explanation
Indices: 24893952--24894004 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24893942 CTGATCCGAT
24893952 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
24893978 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
24894004 C
1 C
24894005 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:24894885 original size:26 final size:26
Alignment explanation
Indices: 24894856--24894908 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24894846 GGCTCAAAAT
*
24894856 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
24894882 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
24894908 C
1 C
24894909 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:24895386 original size:26 final size:26
Alignment explanation
Indices: 24895357--24895409 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24895347 TTGATCCGAT
24895357 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24895383 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24895409 C
1 C
24895410 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24895763 original size:26 final size:26
Alignment explanation
Indices: 24895727--24895779 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24895717 CCAATCTAAT
*
24895727 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
*
24895753 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
24895779 C
1 C
24895780 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:24896479 original size:26 final size:26
Alignment explanation
Indices: 24896450--24896502 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24896440 GGCTCAAAAT
*
24896450 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
24896476 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
24896502 C
1 C
24896503 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:24896995 original size:26 final size:26
Alignment explanation
Indices: 24896951--24897003 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24896941 TTGATCCGAT
**
24896951 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
* *
24896977 CTTAGACTGGGGACAAACTTCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
24897003 C
1 C
24897004 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTCCGTATG
Found at i:24897347 original size:26 final size:26
Alignment explanation
Indices: 24897318--24897370 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24897308 CTGGTCTGAT
*
24897318 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24897344 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24897370 C
1 C
24897371 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24898617 original size:26 final size:26
Alignment explanation
Indices: 24898588--24898640 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24898578 CTAATCCAAT
24898588 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
24898614 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
24898640 C
1 C
24898641 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24898893 original size:26 final size:26
Alignment explanation
Indices: 24898864--24898915 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24898854 CCGGTCCAAT
24898864 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
*
24898890 CTTAGATTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
24898916 ACAAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:24898906 original size:276 final size:276
Alignment explanation
Indices: 24898398--24898934 Score: 684
Period size: 276 Copynumber: 1.9 Consensus size: 276
24898388 ATCCTGCCGG
* ** *
24898398 TCCTGTTGCCACAACCCTCGGTTTGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGC
* * *
24898463 CAACCCACGAAACAGGCGTGCAGGCGCTCAACAGACCAGAGAGACAGAATGCGCAAGCTGGGGAT
66 CAACCCACGAAACAGGCGTGCAAGCACTCAACAGACCAGAGAGACAGAATGCGCAAGCCGGGGAT
* * * * * *
24898528 CAGCCCGATCCCCCCTGCGTGCTGCCGATCTTGCTGCCACATCCCTCGGTCTAATCCAATCTTAG
131 CAGCCCGATCCCCCCTGCATGCTGCCAATCCTGCTGCCACAACCCTCGATCCAATCCAATCTTAG
* * * *
24898593 ACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
196 ACTGGGAATGAACTCCATATGCTTAGACTGAGGATGAACTCCGTATGACAAAGTCAACCCACGAA
24898658 ACGAGCGTGCTACCGA
261 ACGAGCGTGCTACCGA
* ** * **
24898674 TCCTGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGATGTGGAGTGTA-CTCTGTATGCCTAAG
1 TCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAG
* * * **
24898738 CCAACCCACGAAA-TGAGCGTGCAAGCACTCAACCGGCCAGAGAGGTAGAATGTC-CAAGCCGGG
65 CCAACCCACGAAACAG-GCGTGCAAGCACTCAACAGACCAGAGAGACAGAATG-CGCAAGCCGGG
* * * *** **
24898801 GATCGGCTCGATCCCCCCTGCATGCTGTCAATCCTGCTGTTGCAACCCTCGATCCGGTCCAATCT
128 GATCAGCCCGATCCCCCCTGCATGCTGCCAATCCTGCTGCCACAACCCTCGATCCAATCCAATCT
* *
24898866 TAGACTGGGAATGAACTCCGTATGCTTAGATTGAGGATGAACTCCGTATGACAAAGTCAACCCAC
193 TAGACTGGGAATGAACTCCATATGCTTAGACTGAGGATGAACTCCGTATGACAAAGTCAACCCAC
24898931 GAAA
258 GAAA
24898935 TGACCGTGTG
Statistics
Matches: 220, Mismatches: 38, Indels: 6
0.83 0.14 0.02
Matches are distributed among these distances:
275 1 0.00
276 217 0.99
277 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (276 bp):
TCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGC
CAACCCACGAAACAGGCGTGCAAGCACTCAACAGACCAGAGAGACAGAATGCGCAAGCCGGGGAT
CAGCCCGATCCCCCCTGCATGCTGCCAATCCTGCTGCCACAACCCTCGATCCAATCCAATCTTAG
ACTGGGAATGAACTCCATATGCTTAGACTGAGGATGAACTCCGTATGACAAAGTCAACCCACGAA
ACGAGCGTGCTACCGA
Found at i:24900501 original size:158 final size:157
Alignment explanation
Indices: 24899959--24900507 Score: 573
Period size: 159 Copynumber: 3.5 Consensus size: 157
24899949 GCTTAGACAT
* * *
24899959 GGAATGAACTCCGCATGCCTAAGCCAACCCCCAAAACGAGCGTGCGGGCGCTCAGCCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * * * * * **
24900024 AGGCAGAATGCGCAAGCTGGGGATTGACCCGGTCCTCCCCTACGTGCTGTCAATCCTTCTGCTGC
66 AGGCACAATGCGCAAGCCGGGGATCGACCTGGTCC-CCCCTGCGTGCTGCCAATCCTACT-CCAC
* * ** *
24900089 AACCCTCGGTTCAGTCCAATCTTAGACTA
129 AACCCTCAGTCCAGTCTGATCTTGGACTA
* * * * * * * * *
24900118 GGAATGAACTCCATACGCATAAGTCAGCCCACGAAACGAGCGTGCGGGCGCTGAGCCGATCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * * ** * *
24900183 AGGCATAATGCGCAAGTCGGGGATCGGCCTAATCCCCCTCTGCGTGCTGCCAGTCCTGCTGCCAC
66 AGGCACAATGCGCAAGCCGGGGATCGACCTGGTCCCCC-CTGCGTGCTGCCAATCCTACT-CCAC
** *
24900248 AACCCTCAGTCCAGT-TGGGGCTTGGACAA
129 AACCCTCAGTCCAGTCT-GATCTTGGACTA
* * * * * **
24900277 GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAACCGACTAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
* * *
24900342 AGGCACAATGCGCAAGCCAGGGAACGACCTGGTCCCCCCTGCGTGCTGCCAATCCTACTATCACA
66 AGGCACAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTGCGTGCTGCCAATCCTACT-CCACA
*
24900407 ACCCTCAGTCC-GATCTGATCTTGGACTG
130 ACCCTCAGTCCAG-TCTGATCTTGGACTA
* *
24900435 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
24900500 AGGC-CAAT
66 AGGCACAAT
24900508 CGGAGAGGCA
Statistics
Matches: 317, Mismatches: 69, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
157 5 0.02
158 106 0.33
159 206 0.65
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAG
AGGCACAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTGCGTGCTGCCAATCCTACTCCACAA
CCCTCAGTCCAGTCTGATCTTGGACTA
Found at i:24907145 original size:26 final size:26
Alignment explanation
Indices: 24907116--24907168 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24907106 CTGGTCCGAT
24907116 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24907142 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24907168 C
1 C
24907169 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24907252 original size:355 final size:353
Alignment explanation
Indices: 24906456--24908258 Score: 1309
Period size: 355 Copynumber: 5.2 Consensus size: 353
24906446 CCGATCTGAT
* * * * *
24906456 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAG-
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* *** * * * *
24906520 CCAGTTAAAGAGGCATAATGCGCAAGCCGGGGATCAGTCTGGTCCCTCTCTGCGTGCTGTC-AGT
66 CGACCGAAA-AGGCATAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGA-T
* * * * *
24906584 ----C--CC-G--CTG---CCACAACCTTCGGTCCAGCTGGGGCTTAGACATGGAATG-AGCCCC
129 CCCACTACCAGTCCTGCTACCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGTA-CTCC
* * * * * ** * * *
24906636 CTATGCCTAAGCCAACCCATGAAATGGGCGTACGGGCACTCAGCCGGTCAGAGAGGCAGAATGCG
193 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAGCCGACCGGAGAGGCAGAATACA
* * * * *
24906701 CAAGCTGGGGATCGGCTCGGT---CCCT-CA-----T-AT-GTGCTGCCGCAACCCTCAGTCTTG
258 CAAGC-GGGGATCGGCCCGATCCCCCCTGCATGCTCTGATCCTGCTGCCGCAACCCTCAATCTGG
* * *
24906755 TTCGATCTTAGACTGGGAATGAACACCATATG
322 TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
24906787 CTTAGACTGGGGATGAATTTCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
** * * * * *
24906852 CGGTCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGACCGAAAAGGCATAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
** * * * *
24906917 TGCTGCCAGTCCTGCTACTACAACCTTCGATCCGGCTAGGGCTTAGATGA-GGAATGTACTCCGT
131 CACTACCAGTCCTGCTACCACAACCCTCGATCCGGCTAGGGCTTAGA-CATGGAATGTACTCCGT
* * * *
24906981 ATGCCTAAGCCAACCCATGGAACGAGCGTGCAGGCACTTAGCC-AGCCGGAGAGGTAGAATACGC
195 ATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAGCCGA-CCGGAGAGGCAGAATACAC
* * *
24907045 AAGTCGGGGATTGGCCCGATCCCCCCTACATGCTACTGATCCTGCTACCGCAACCCTCAATCTGG
259 AAG-CGGGGATCGGCCCGATCCCCCCTGCATGCT-CTGATCCTGCTGCCGCAACCCTCAATCTGG
24907110 TCCGATCTTAGACTGGGAATGAACTCCGTATG
322 TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
24907142 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGAGGGCACTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
** * *
24907207 CGACCGAAAAGGCATAATGCGCAAGCTGGGGATTGGCCCGGTCCCCCTCTGCATGCTGTCGGT--
66 CGACCGAAAAGGCATAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * *
24907270 --C--CC-G--CTG---CCACAACCCTCGGTCTGGCTGGGGCTTAAACATGGAATGTGCTCCCTA
131 CACTACCAGTCCTGCTACCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGTACTCCGTA
* * * * ***
24907325 TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCAACCGGAGAGGCAGAATGTGCAA
196 TGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAGCCGACCGGAGAGGCAGAATACACAA
* * * * * * **
24907390 GCCGGGGATCGGCCC-AGTCCCCCCTGCGTGCTGTCAATCATGCTGTCGCAACCCTCGATCCAGT
261 G-CGGGGATCGGCCCGA-TCCCCCCTGCATGCTCT-GATCCTGCTGCCGCAACCCTCAATCTGGT
*
24907454 CCGATCTTAGACTAGGAATGAACTCCGTATG
323 CCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
24907485 CTTAGACT-AGGATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCATGCGGTCGCTTAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG--GC---G-
* * * * * * * *
24907549 CGGTCGGAGAGGTTGGCCAGAGAA-GCATAATG-GATAAGTCT-AGGATCAACCCGATCCCTCTC
60 C--TC----A-GTCGACC-GAAAAGGCATAATGCG-CAAG-CTGGGGATCAGCCCGGTCCCCCTC
* * * * * *
24907611 TGCGTACTGCCGATCCCACTACCTGTCCTGCTACCATAACCCTC-AGTCTGGCTGGGGCTTAGAC
115 TGCGTGCTGTCGATCCCACTACCAGTCCTGCTACCACAACCCTCGA-TCCGGCTAGGGCTTAGAC
* * * * * * *
24907675 GTGGAATGTACTTCGTATGCCTAAACCAACCCACGAATCGAGCGTGCAGGCACTCAGTCGACTGG
179 ATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAGCCGACCGG
* * ** *
24907740 AGAGGTAGAATGCACAAGCCAGG-T--G--CG--------TGC-TG-TC-GATCTTGCTGCCGCA
244 AGAGGCAGAATACACAAGCGGGGATCGGCCCGATCCCCCCTGCATGCTCTGATCCTGCTGCCGCA
* * *
24907789 ACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACACCGTATG
309 ACCCTCAATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
24907834 CTTAGACTGGGGATGAACTCAGTACGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * * * ** * *
24907899 CGACTGGAGAGGCATAATTCACAAGCTGTGGATCAGTCCAGTCCCCCTCTATGCGCAGTCGATCC
66 CGACCGAAAAGGCATAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * * * *
24907964 CATTATCGGTCCTGCTGCCACAACCCTCGGTTCAGCTATGGCTTAGACATGGAATGTACTCCGTA
131 CACTACCAGTCCTGCTACCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGTACTCCGTA
* * * * * ** * * *
24908029 TGCCTAAGCCAACCCACGAAACTAGCATACGGGCGTTCAGCCGATCAGAGAGCCAGAATACACAA
196 TGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAGCCGACCGGAGAGGCAGAATACACAA
* * * * * * * * *
24908094 GCTGGGGATCGGTCTGGTCCCCCCTGCATGCTACCGATCCTACTACCGTAACCCTCGATTTGGTC
261 GC-GGGGATCGGCCCGATCCCCCCTGCATGCT-CTGATCCTGCTGCCGCAACCCTCAATCTGGTC
* * *
24908159 CAATCTTAGACTAGGAATGAACTCTGTATG
324 CGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * *
24908189 CTTAGATTGGGGATGACCTCCGTATGCCTAAGTCAACCCACGAAATAAGCGTGTGGGCGCTCAAT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
24908254 CGACC
66 CGACC
24908259 AGAGAGCCAG
Statistics
Matches: 1155, Mismatches: 230, Indels: 150
0.75 0.15 0.10
Matches are distributed among these distances:
331 103 0.09
332 3 0.00
335 1 0.00
336 4 0.00
337 143 0.12
338 4 0.00
339 1 0.00
340 3 0.00
341 1 0.00
342 44 0.04
343 282 0.24
344 7 0.01
345 1 0.00
346 7 0.01
347 2 0.00
348 4 0.00
349 62 0.05
350 44 0.04
351 5 0.00
352 4 0.00
353 5 0.00
354 5 0.00
355 305 0.26
356 6 0.01
359 1 0.00
361 3 0.00
362 1 0.00
363 1 0.00
364 3 0.00
365 1 0.00
366 3 0.00
367 96 0.08
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (353 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGACCGAAAAGGCATAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
CACTACCAGTCCTGCTACCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGTACTCCGTA
TGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAGCCGACCGGAGAGGCAGAATACACAA
GCGGGGATCGGCCCGATCCCCCCTGCATGCTCTGATCCTGCTGCCGCAACCCTCAATCTGGTCCG
ATCTTAGACTGGGAATGAACTCCGTATG
Found at i:24907505 original size:25 final size:26
Alignment explanation
Indices: 24907459--24907510 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
24907449 CCAGTCCGAT
24907459 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
24907485 CTTAGACTAGG-ATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
24907510 C
1 C
24907511 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:24909447 original size:26 final size:26
Alignment explanation
Indices: 24909418--24909467 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
24909408 CCGGTCTGAT
*
24909418 CTTAGCCTGGGAATGAACTCCGTACA
1 CTTAGACTGGGAATGAACTCCGTACA
* *
24909444 CTTAGACTGGGGATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
24909468 TGCCTACGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACA
Found at i:24910678 original size:158 final size:156
Alignment explanation
Indices: 24910177--24910749 Score: 558
Period size: 158 Copynumber: 3.6 Consensus size: 156
24910167 GCTCCGTATG
* * *
24910177 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAATCCATAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTGCGGGCGCTCAAC
** * * * * *
24910242 CGGTTGGAGAGGTAGAATGCGTAAGCTAGGGATTGACTCGGTCCCCCCTGCGTGCTATCGATCTT
66 CGGCCGGAGAGGTAGAATGCGCAAGC-CGGGATTGAC-CCGTCCCCCCTACGTGCTATCGATCCT
* * * *
24910307 GTTGTCACAACCCTCAGTCCGGTCCGAT
129 GCTGCCACAACCCTCAGTCCGATTCGAT
* * * * * * * *
24910335 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTTAACCAACAAAATGAGCGTGTGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTGCGGGCGCTCAA
* * * * * *
24910399 CCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATTGGCCCGGTCCCCCTCTACGTGCTGTCGGTC
65 CCGGCCGGAGAGGTAGAATGCGCAAGCCG-GGATTGACCC-GTCCCCC-CTACGTGCTATCGATC
* * * **
24910464 CCGCTGCCACAACCCTCAGTCCGACTGGGG
127 CTGCTGCCACAACCCTCAGTCCGATTCGAT
* * * * *
24910494 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCTAACCCACGAAACGGGCATGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTGCGGGCGCTCAAC
* * * *
24910559 CGGCCGGAGGGGTAGAATGCGCAAGCCGGTGATCGACCCGACCCTCCCTACGTGCTACCGATCCT
66 CGGCCGGAGAGGTAGAATGCGCAAGCCGG-GATTGACCCGTCCC-CCCTACGTGCTATCGATCCT
* *
24910624 GCTGGCACAACCCTCAGTTCGATTCGAT
129 GCTGCCACAACCCTCAGTCCGATTCGAT
* *
24910652 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAG-TCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACAAAACGAGCGTGCGGGCGCTCA
* * * * * *
24910715 ATCGGTCAGAGAGGCATAATGCGTAAGCCAGGGAT
64 ACCGGCCGGAGAGGTAGAATGCGCAAGCC-GGGAT
24910750 CAGCCCGATC
Statistics
Matches: 332, Mismatches: 73, Indels: 20
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 208 0.63
159 118 0.36
160 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAACGAGCGTGCGGGCGCTCAAC
CGGCCGGAGAGGTAGAATGCGCAAGCCGGGATTGACCCGTCCCCCCTACGTGCTATCGATCCTGC
TGCCACAACCCTCAGTCCGATTCGAT
Found at i:24910785 original size:317 final size:317
Alignment explanation
Indices: 24910176--24910787 Score: 764
Period size: 317 Copynumber: 1.9 Consensus size: 317
24910166 AGCTCCGTAT
* * * * *
24910176 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAATCCATAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACAAAACGAGCATGCGGGCGCTCAA
** * * * * * * *
24910241 CCGGTTGGAGAGGTAGAATGCGTAAGCTAGGGATTGACTCGGTCCCCCCTGCGTGCTATCGATCT
66 CCGGCCGGAGAGGTAGAATGCGCAAGCTAGGGATCGACTCCGACCCCCCTACGTGCTACCGATCC
* * * *
24910306 TGTTGTCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTTAA
131 TGCTGGCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAA
* * * * * **
24910371 CCAACAAAATGAGCGTGTGGGCGCTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATTGG
196 CCAACAAAACGAGCGTGCGGGCGCTCAACCGGCAGAAGAGGCATAATGCGCAAGCCGAGGATCAG
* * ** *
24910436 CCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCAGTCCGACTGGG
261 CCCGATCCCCCTCTACATGCTACCGATCCCGCTGCCACAACCCTCAGTCCGACTGGG
* * *
24910493 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCTAACCCACGAAACGGGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACAAAACGAGCATGCGGGCGCTCAA
* *
24910558 CCGGCCGGAGGGGTAGAATGCGCAAGC-CGGTGATCGAC-CCGACCCTCCCTACGTGCTACCGAT
66 CCGGCCGGAGAGGTAGAATGCGCAAGCTAGG-GATCGACTCCGACCC-CCCTACGTGCTACCGAT
* * *
24910621 CCTGCTGGCACAACCCTCAGTTCGATTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
129 CCTGCTGGCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTC
* * * *
24910686 AACCCACGAAACGAGCGTGCGGGCGCTCAATCGGTCAG-AGAGGCATAATGCGTAAGCC-AGGGA
194 AACCAACAAAACGAGCGTGCGGGCGCTCAACCGG-CAGAAGAGGCATAATGCGCAAGCCGA-GGA
* *
24910749 TCAGCCCGATCCCCTTCTGCATGCTACCGATCCCGCTGC
257 TCAGCCCGATCCCCCTCTACATGCTACCGATCCCGCTGC
24910788 AGGTCCTGCT
Statistics
Matches: 247, Mismatches: 44, Indels: 8
0.83 0.15 0.03
Matches are distributed among these distances:
316 8 0.03
317 237 0.96
318 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACAAAACGAGCATGCGGGCGCTCAA
CCGGCCGGAGAGGTAGAATGCGCAAGCTAGGGATCGACTCCGACCCCCCTACGTGCTACCGATCC
TGCTGGCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAA
CCAACAAAACGAGCGTGCGGGCGCTCAACCGGCAGAAGAGGCATAATGCGCAAGCCGAGGATCAG
CCCGATCCCCCTCTACATGCTACCGATCCCGCTGCCACAACCCTCAGTCCGACTGGG
Found at i:24911338 original size:26 final size:26
Alignment explanation
Indices: 24911302--24911353 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
24911292 CTAGTCTGAT
* *
24911302 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
24911328 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
24911354 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:24912061 original size:26 final size:26
Alignment explanation
Indices: 24912023--24912075 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24912013 GGCTCAAAAT
* *
24912023 CTTAGACTGGGAACGAGCTCTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
24912049 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAACGAACTCCGTATG
24912075 C
1 C
24912076 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:24912549 original size:26 final size:26
Alignment explanation
Indices: 24912505--24912557 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24912495 TCGGTCTGAT
* *
24912505 CTTAGACTTGGAATGAACTCCGGATG
1 CTTAGACTGGGAATCAACTCCGGATG
* *
24912531 CTTAGACTGGGGATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGGATG
24912557 C
1 C
24912558 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGGATG
Found at i:24912909 original size:26 final size:27
Alignment explanation
Indices: 24912873--24912930 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
24912863 CCGGTCCAAT
24912873 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
*
24912899 CTTAGACTGGGGATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
24912926 CTTAG
1 CTTAG
24912931 TCAACCCATG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:24914132 original size:158 final size:156
Alignment explanation
Indices: 24913631--24914132 Score: 438
Period size: 158 Copynumber: 3.2 Consensus size: 156
24913621 GCTCCGTATG
* * * *
24913631 CTTAAACATGGAAGGAACTCTGTATGCCTAAGCCAATCCACGAAATGAGTATGCGGGCGCTCAGT
1 CTTAAACATGGAATGAACTCCGTATGCCTAAGCCAA-CCACGAAATGAGTGTGC-GGCGCTCAGC
* * * *
24913696 CAGCTGGAGAGGCAGACTGCGCAAGTTGGGGATCGACCCGTTCCCTCCCTTCGTGCTGTCGATCC
64 CAGCCGGAGAGGCAGAATGCGCAAGTTGGGGATCGACCCGATCCC-CCCTGCGTGCTGTCGATCC
* * *
24913761 TGC-AGCTGCAACCTTCGATCTGGTCGGAT
128 TGCTA-CCGCAACCCTCGATCCGGTCGGAT
* * * * * *
24913790 CTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCTATGAAATGAGTGTGCGGCGCTGAGC
1 CTTAAACAT-GGAATGAACTCCGTATGCCTAAGCCAACC-ACGAAATGAGTGTGCGGCGCTCAGC
* * * * * * * * * *
24913854 CAGCCGAAGAGGCATAATTCGCAAGCTAGGGATCGGCCCGGTCCCCCCCTGTGTGCTGCCGGT-C
64 CAGCCGGAGAGGCAGAATGCGCAAGTTGGGGATCGACCCGAT-CCCCCCTGCGTGCTGTCGATCC
* * * * **
24913918 TCGCTGCCACAACCCTCAGA-CCAGTTGGGG
128 T-GCTACCGCAACCCTC-GATCCGGTCGGAT
* * * * * * * * *
24913948 CTTAGACATGGAATGAGCTCCCTATGCCCAAGCCAACCAACGAAACGGGCGTGCAGACGCTCAAC
1 CTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACC-ACGAAATGAGTGTGC-GGCGCTCAGC
* * *
24914013 CGGCCGGAGAGGAAGAATGCGCAAGTTGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCT
64 CAGCCGGAGAGGCAGAATGCGCAAGTTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
*
24914078 GCTACCGCAACCCTCGATCCGGTCCGAT
129 GCTACCGCAACCCTCGATCCGGTCGGAT
*
24914106 CTTAAAC-TGGGAATGAACTCTGTATGC
1 CTTAAACAT-GGAATGAACTCCGTATGC
24914133 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 69, Indels: 23
0.74 0.19 0.06
Matches are distributed among these distances:
157 5 0.02
158 169 0.64
159 89 0.34
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCACGAAATGAGTGTGCGGCGCTCAGCCA
GCCGGAGAGGCAGAATGCGCAAGTTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGC
TACCGCAACCCTCGATCCGGTCGGAT
Found at i:24914142 original size:26 final size:26
Alignment explanation
Indices: 24914106--24914158 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24914096 CCGGTCCGAT
*
24914106 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
24914132 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
24914158 C
1 C
24914159 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:24914800 original size:355 final size:354
Alignment explanation
Indices: 24913945--24914933 Score: 1063
Period size: 355 Copynumber: 2.7 Consensus size: 354
24913935 AGACCAGTTG
* * * **
24913945 GGGCTTAGACATGGAATG-AGCTCCCTATGCCCAAGCCAACCAACGAAACGGGCGTGC-AGACGC
1 GGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCACGAAACGACCGTGCGAG-CGC
** ** * * * * * * * **
24914008 TCAACCGGCCGGAGAGGAAGAATGCGCAAGTTGGGGA-TCGACCCGATCCCCCCTGCGTGCTATC
64 TCAACCGATCAAAGAGGCAGAATACGCAAGCTGGGGATTAG-TCAGATCCCTCCTGCGTGCTGCC
* * * *
24914072 GATCCTGCTACCGCAACCCTCGATCCGGTCCGATCTTAAACTGGGAATGAACTCTGTATGCTTAG
128 GATCCTGCTGCCGCAA-CCTTGATTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
* * * *
24914137 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGAGCTCAACCGATC
192 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCG---
* * * * * * *
24914202 GTAGAGGCCAGCCAGAGAAGCATATTACGCAAGTCAGGGATCAGCCTGGTCCCCTTCTGCATTCT
254 GT------CA---A-AGAGGCATAATAAGCAAGTCAGGGATCAGCCCGGTCCCCCTCTACATGCT
** * * *
24914267 GTCGATCCCGCTGCCGGTCCTGCTGCCACAACCCTCGATCCGACTG
309 ACCGATCCCGCTGCCGGTCATGCTACCACAACCCTCGATCCGACTA
*
24914313 GGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGACCGTGCGAGCGCTC
1 GGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGACCGTGCGAGCGCTC
* * ** * * * *
24914378 AACCGGTCAAAGAGGTAGAATGTGCAAGCTGGGGATTAGTCCGATCTCTCTTGCGTGCTGTCGAT
66 AACCGATCAAAGAGGCAGAATACGCAAGCTGGGGATTAGTCAGATCCCTCCTGCGTGCTGCCGAT
* **
24914443 CCTGCTGCCGCAATCCTTGATTCGGTCCGATCTTAGACTGTGAATGAACTCCATATGCTTAGACT
131 CCTGCTGCCGCAA-CCTTGATTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACT
* *
24914508 GGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGTCAAA
195 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGTCAAA
* * *
24914573 GAGGCATAATAAGTAAGTCGGGGATCAGCCCGGTCCCCCTCTACATGCTACCGATCTCGCTGCCG
260 GAGGCATAATAAGCAAGTCAGGGATCAGCCCGGTCCCCCTCTACATGCTACCGATCCCGCTGCCG
* *
24914638 GTCATGCTACCACAACCCTCGGTCTGACTA
325 GTCATGCTACCACAACCCTCGATCCGACTA
* * * ** *
24914668 GGGCTTATACATGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTGC-AGATGCT
1 GGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGACCGTGCGAG-CGCT
** * * *
24914732 CAGTCTATCAGAGAGGCAGAATACGCAAGCTGGGG-TTCAGCTCAG-TCCCTCCTGGGTGCTGCC
65 CAACCGATCAAAGAGGCAGAATACGCAAGCTGGGGATT-AG-TCAGATCCCTCCTGCGTGCTGCC
* * *
24914795 GATCCTGCTGCCGCAACCTTCGATTCGGTCTGATCTTAGACTGGGAATGATCTCTGTGTGCTTAG
128 GATCCTGCTGCCGCAACCTT-GATTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
* *
24914860 ACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGGTC
192 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGTC
**
24914925 GGAGAGGCA
257 AAAGAGGCA
24914934 GAATGCGCAA
Statistics
Matches: 533, Mismatches: 81, Indels: 27
0.83 0.13 0.04
Matches are distributed among these distances:
354 8 0.02
355 298 0.56
356 4 0.01
359 2 0.00
365 2 0.00
368 214 0.40
369 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (354 bp):
GGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGACCGTGCGAGCGCTC
AACCGATCAAAGAGGCAGAATACGCAAGCTGGGGATTAGTCAGATCCCTCCTGCGTGCTGCCGAT
CCTGCTGCCGCAACCTTGATTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTG
GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGGTCAAAG
AGGCATAATAAGCAAGTCAGGGATCAGCCCGGTCCCCCTCTACATGCTACCGATCCCGCTGCCGG
TCATGCTACCACAACCCTCGATCCGACTA
Found at i:24915149 original size:159 final size:159
Alignment explanation
Indices: 24914855--24915356 Score: 395
Period size: 159 Copynumber: 3.2 Consensus size: 159
24914845 TCTCTGTGTG
* * *
24914855 CTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAAC
* * * * *
24914920 CGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATCC
66 CGATCGAAGAGGCAGAACGCACAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATCC
**
24914985 TGCTGCTGCAACCCTCGGTCTGATCTGAT
131 TGCTGCCACAACCCTCGGTCTGATCTGAT
* * * ** ** * *
24915014 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGTGTGTGGGGGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAAC
* * * * * * * *
24915079 CGATCGAAGAGGTATAACGCACAAGCTGGGGATCGGCCCGATCCCCCTCTGTGTGCTGCCAGTTT
66 CGATCGAAGAGGCAGAACGCACAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGCC-GATC
* * **
24915144 C-GCTGCCACAACCCTCGGTCCG-GCTGGGG
130 CTGCTGCCACAACCCTCGGTCTGATCT-GAT
* * * ** * * * **
24915173 CTTAGACAT-GGAAT-AAGCTCCCTATTCCTAAGCCAACCCACGGAACGGGCGTACGGGTGCTCA
1 CTTAGAC-TGGGAATGAA-CTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCAGGCACTCA
* * * * * * * * * *
24915236 ACCGACCGAAGAGGTAGAATGCACAATCCGGGGATTGGCCCGGT--CCCACTGCGTGCTGTCGAT
64 ACCGATCGAAGAGGCAGAACGCACAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGCCGAT
* * * * * * *
24915299 CCTACTGTCGCAACCCTTGATCTGGTTTGAT
129 CCTGCTGCCACAACCCTCGGTCTGATCTGAT
*
24915330 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
24915357 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 70, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
156 4 0.02
157 48 0.18
158 7 0.03
159 202 0.76
160 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAAC
CGATCGAAGAGGCAGAACGCACAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCACAACCCTCGGTCTGATCTGAT
Found at i:24915359 original size:26 final size:26
Alignment explanation
Indices: 24915330--24915382 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24915320 CTGGTTTGAT
*
24915330 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24915356 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24915382 C
1 C
24915383 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24916817 original size:158 final size:159
Alignment explanation
Indices: 24916441--24916805 Score: 448
Period size: 159 Copynumber: 2.3 Consensus size: 159
24916431 AGCTCCGTAT
* * *
24916441 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * *
24916506 CCTGCTGGAGAGGCAGAATGCACAAGTCAGGGATCGACCCGGTCCCCTCCAGTGTGCTGTCGATC
66 CCAGCTGAAGAGGCAGAATGCACAAGTCAGAGATCAACCCGATCCCCTCCAGTGTGCTGTCGATC
* * ** *
24916571 CTGCTATCGTAACCCTCGGTCTAGTCTGA
131 CCGCTACCACAACCCTCGGTCCAGTCTGA
* * * * * * *
24916600 TCTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * *
24916665 CCAGCTGAAGAGGCATAATGCACAAGTCAGAGATCAACCCGATCTCCTTCTGTGTGCTGTCGGTC
66 CCAGCTGAAGAGGCAGAATGCACAAGTCAGAGATCAACCCGATCCCCTCCAGTGTGCTGTCGATC
*
24916730 CCGCTACCACAA-CCTCGGTCCAG-CTGGG
131 CCGCTACCACAACCCTCGGTCCAGTCT-GA
*
24916758 GCTTAGACAAGGAATGAGA-TCCCTATGCCTAAGCCAACCCACGAAACG
1 GCTTAGACAAGGAATGA-ACTCCGTATGCCTAAGCCAACCCACGAAACG
24916806 GGCTTACGGG
Statistics
Matches: 172, Mismatches: 32, Indels: 5
0.82 0.15 0.02
Matches are distributed among these distances:
157 2 0.01
158 51 0.30
159 119 0.69
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCAGCTGAAGAGGCAGAATGCACAAGTCAGAGATCAACCCGATCCCCTCCAGTGTGCTGTCGATC
CCGCTACCACAACCCTCGGTCCAGTCTGA
Found at i:24916833 original size:158 final size:158
Alignment explanation
Indices: 24916441--24916848 Score: 437
Period size: 159 Copynumber: 2.6 Consensus size: 158
24916431 AGCTCCGTAT
* * *
24916441 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC-A
* * * * *
24916506 CCTG-CTGGAGAGGCAGAATGCACAAGTCAGGGATCGACCCGGTCCCCTCCAGTGTGCTGTCGAT
65 GC-GACTGAAGAGGCAGAATGCACAAGTCAGAGATCAACCCGATCCCCTCCAGTGTGCTGTCGAT
* * ** *
24916570 CCTGCTATCGTAACCCTCGGTCTAGTCTGA
129 CCCGCTACCACAACCCTCGGTCCAGTCTGA
* * * * * *
24916600 TCTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
24916665 CCAGCTGAAGAGGCATAATGCACAAGTCAGAGATCAACCCGATCTCCTTCTGTGTGCTGTCGGTC
66 CGA-CTGAAGAGGCAGAATGCACAAGTCAGAGATCAACCCGATCCCCTCCAGTGTGCTGTCGATC
*
24916730 CCGCTACCACAA-CCTCGGTCCAG-CTGGG
130 CCGCTACCACAACCCTCGGTCCAGTCT-GA
* * * * *
24916758 GCTTAGACAAGGAATGAGA-TCCCTATGCCTAAGCCAACCCACGAAACGGGCTTACGGGCGTTCA
1 GCTTAGACAAGGAATGA-ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *
24916822 GTCGACCGAAGAGGCAGAATGCGCAAG
65 G-CGACTGAAGAGGCAGAATGCACAAG
24916849 CCGGGGATCA
Statistics
Matches: 203, Mismatches: 41, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 84 0.41
159 117 0.58
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CGACTGAAGAGGCAGAATGCACAAGTCAGAGATCAACCCGATCCCCTCCAGTGTGCTGTCGATCC
CGCTACCACAACCCTCGGTCCAGTCTGA
Found at i:24917742 original size:26 final size:26
Alignment explanation
Indices: 24917706--24917758 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24917696 TCGGTTCGAT
24917706 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24917732 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24917758 C
1 C
24917759 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24918457 original size:26 final size:26
Alignment explanation
Indices: 24918428--24918480 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24918418 GGCTCAAAAT
*
24918428 CTTAGA-ATGGGAATGAGCTCCGTATG
1 CTTAGATAT-GGAATGAACTCCGTATG
*
24918454 CTTAGATATGGAATGAACTTCGTATG
1 CTTAGATATGGAATGAACTCCGTATG
24918480 C
1 C
24918481 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATATGGAATGAACTCCGTATG
Found at i:24919042 original size:171 final size:170
Alignment explanation
Indices: 24918743--24919078 Score: 403
Period size: 171 Copynumber: 2.0 Consensus size: 170
24918733 TATCGGTCCC
* *
24918743 GCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAAC
* ** * * * *
24918808 CCATGAAATCGGCATGCAGGCGCTCAGTCGACCGGAGAAGGATAATGCACAAGCCGAGGATCAAC
66 CCACGAAATCAACATGCAGGCCCTCAGTCGACCGAAGAAGGAGAATGCACAAACCGAGGATCAAC
24918873 CCGATCCCCCTCTGCGTGCTGTCGAT-CTCGCTGCCGATCCT
131 CCGATCCCCCT-TGCGTGCTGTCGATCCT-GCTGCCGATCCT
* * *
24918914 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAG
1 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAA
* * * * * * *
24918978 CCCACGAAA-CAAACGTGTAGGCCCTCAGTC-AGTCGAAG-AGTTAGAATGCGCAAATCGGGGAT
65 CCCACGAAATC-AACATGCAGGCCCTCAGTCGA-CCGAAGAAG-GAGAATGCACAAACCGAGGAT
*
24919040 CAACCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTGCCG
127 CAACCCGATCCCCCTTGCGTGCTGTCGATCCTGCTGCCG
24919079 CAACCTTCGA
Statistics
Matches: 140, Mismatches: 20, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
170 25 0.18
171 114 0.81
172 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (170 bp):
GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAAC
CCACGAAATCAACATGCAGGCCCTCAGTCGACCGAAGAAGGAGAATGCACAAACCGAGGATCAAC
CCGATCCCCCTTGCGTGCTGTCGATCCTGCTGCCGATCCT
Found at i:24919150 original size:26 final size:26
Alignment explanation
Indices: 24919100--24919152 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24919090 CCAGTTCGAT
**
24919100 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24919126 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
24919152 C
1 C
24919153 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24919450 original size:367 final size:368
Alignment explanation
Indices: 24918839--24919553 Score: 898
Period size: 367 Copynumber: 1.9 Consensus size: 368
24918829 GCTCAGTCGA
* * * *
24918839 CCGGAGAAGGATAATGCACAAGCCGAGGATCAACCCGATCCCCCTCTGCGTGCTGTCGATCTCGC
1 CCGGAGAAGGATAATGCACAAGCAGAGGATCAACCCGATCCCCATCTGCGTACTGTCGATCCCGC
* * *
24918904 TGCCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGC
66 TGCCGATCCTACTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGTACTCCGTATGC
* * * * ** * *
24918969 CTAAGCCAGCCCACGAAACAAACGTGTAGGCCCTCAGTCAGTCGAAGAGTTAGAATGCGCAAATC
131 CTAAGCCAACCCACGAAACAAACGTGCAGGCCCTCAGCCAGCCGAAGAGGCAGAACGCGCAAACC
* * * * * ** *
24919034 GGGGATCAACCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTGCCGCAACCTTCGATCCAGTTC-G
196 AGGGATCAACCCAGTCCCCCATACGTGCTATCGATCCCACTGCCGCAACCCTCGATCCA-TTCTG
**
24919098 ATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAC
260 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAC
** *
24919163 CCATGAAACGAGTGTACGGGCACTCAGTCGACCGGAGAGGCCGG
325 CCACAAAACGAGCGTACGGGCACTCAGTCGACCGGAGAGGCCGG
* * * *
24919207 CCGGAG-AGGCATAATGCGCAGGCAGAGGATCAGCCTGATCCCCATCTGCGTACTGTCGATCCCG
1 CCGGAGAAGG-ATAATGCACAAGCAGAGGATCAACCCGATCCCCATCTGCGTACTGTCGATCCCG
* * * * * **
24919271 CTGCTGGTCTTACTGCGACAA-CCTCAGTCTGACTAGGGCTTAGATGTGGAATGTACTCCGTATG
65 CTGCCGATCCTACTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGTACTCCGTATG
* * * * * * *
24919335 CCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC-GACCGGAGAGGCAGAACGCGCAAG
130 CCTAAGCCAACCCACGAAACAAACGTGCAGGCCCTCAGCCAG-CCGAAGAGGCAGAACGCGCAAA
** * * *
24919399 CCAGGGATCGGCCTAGTCCCTCATACGTGCTATCGATCCCACTGTCGCAACCCTCGATCCATTCT
194 CCAGGGATCAACCCAGTCCCCCATACGTGCTATCGATCCCACTGCCGCAACCCTCGATCCATTCT
*
24919464 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
259 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAA
*
24919529 CCCACAAAACGAGCGTGCGGGCACT
324 CCCACAAAACGAGCGTACGGGCACT
24919554 TAACCGACCA
Statistics
Matches: 291, Mismatches: 53, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
366 4 0.01
367 219 0.75
368 68 0.23
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (368 bp):
CCGGAGAAGGATAATGCACAAGCAGAGGATCAACCCGATCCCCATCTGCGTACTGTCGATCCCGC
TGCCGATCCTACTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGTACTCCGTATGC
CTAAGCCAACCCACGAAACAAACGTGCAGGCCCTCAGCCAGCCGAAGAGGCAGAACGCGCAAACC
AGGGATCAACCCAGTCCCCCATACGTGCTATCGATCCCACTGCCGCAACCCTCGATCCATTCTGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACC
CACAAAACGAGCGTACGGGCACTCAGTCGACCGGAGAGGCCGG
Found at i:24919503 original size:26 final size:26
Alignment explanation
Indices: 24919467--24919519 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24919457 CCATTCTGAT
24919467 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24919493 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24919519 C
1 C
24919520 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24920472 original size:157 final size:157
Alignment explanation
Indices: 24920186--24920780 Score: 640
Period size: 157 Copynumber: 3.8 Consensus size: 157
24920176 CCTCCATATG
* * * * * *
24920186 CTTAGACATGGAATGAGCTCTGTATGCTTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * *
24920251 CGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAATCCCCCCTGCATGCTGTCGATCCT
66 CGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCTACATGCTGTCGATCCT
*
24920316 GCTGCCACACCCTCGGTCTGGTCCAAT
131 GCTGCCACACCCTCGGTCCGGTCCAAT
* * *
24920343 CTTAGAC-TAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAACGTGCGGGCACTCAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * *
24920407 CCGATCAGAGAGGTAGAATGCGTAAGCCGGGGATCGACCCAATCCCCCCTACATGCTATCGATCC
65 CCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCTACATGCTGTCGATCC
24920472 TGCTGCCACACCCTCGGTCCGGTCCAAT
130 TGCTGCCACACCCTCGGTCCGGTCCAAT
* * * *
24920500 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCACTTAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * ** * ** * * *
24920564 CCGGTCAAACAGGCATAATGCGCAAGTTGGGGATCGAACCGGTCCCCCTCTGCGTGCTGTCGGTC
65 CCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCC-CTACATGCTGTCGATC
* ****
24920629 CCGCTGCCACAACCCTCGGTCCGG-CTGGGG
129 CTGCTGCCAC-ACCCTCGGTCCGGTC-CAAT
* * * * * *
24920659 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * ** *
24920724 CG-GCTGAAGAGGTAGAATGCGTAAGTCGGGGATCAACCCGGTCCCCCCTATATGCTG
66 CGATCAG-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCTACATGCTG
24920781 CCGCAACGCT
Statistics
Matches: 367, Mismatches: 65, Indels: 11
0.83 0.15 0.02
Matches are distributed among these distances:
156 1 0.00
157 234 0.64
158 30 0.08
159 101 0.28
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCTACATGCTGTCGATCCT
GCTGCCACACCCTCGGTCCGGTCCAAT
Found at i:24920757 original size:316 final size:302
Alignment explanation
Indices: 24920186--24920831 Score: 695
Period size: 316 Copynumber: 2.1 Consensus size: 302
24920176 CCTCCATATG
* * * *
24920186 CTTAGACATGGAATGAGCTCTGTATGCTTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTTAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCACTTAGC
** * * *
24920251 CGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAATCCCCCCTGCATGCTGTCGATCCT
65 CGATCAAACAGGCAGAATGCGCAAGCCGAGGATCGAACCAATCCCCCCTGCATGCTGTCGATCCC
* * * * *
24920316 GCTGCCACACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACC
130 GCTGCCACACCCTCGGTCCGGTCCAAGCTTAGACTAGGAATGAACTCCCTATGCATAAGCCAACC
* *
24920381 CACGAAACGAACGTGCGGGCACTCAGCCGATCAGAGAGGTAGAATGCGTAAGCCGGGGATCGACC
195 CACAAAACGAACGTGCGGGCACTCAGCCGATCAGAGAGGTAGAATGCGTAAGCCGGGGATCAACC
* *
24920446 CAATCCCCCCTACATGCTATCGATCCTGCTGCCACACCCTCGGTCCGGTCCAAT
260 CAATCCCCCCT--A---TAT-G---CTGCCG-CA-ACCCTCGGTCCGATCCAAT
* * * *
24920500 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCACTTAGC
1 CTTAGACT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCACTTAGC
* * ** * ** * *
24920565 CGGTCAAACAGGCATAATGCGCAAGTTGGGGATCGAACCGGTCCCCCTCTGCGTGCTGTCGGTCC
65 CGATCAAACAGGCAGAATGCGCAAGCCGAGGATCGAACCAATCCCCC-CTGCATGCTGTCGATCC
*** * *
24920630 CGCTGCCACAACCCTCGGTCCGG-CTGGGGCTTAGAC-ATGGAATGAGCTCCCTATGCCTAAGCC
129 CGCTGCCAC-ACCCTCGGTCCGGTC-CAAGCTTAGACTA-GGAATGAACTCCCTATGCATAAGCC
** * * * *
24920693 AACCCACAAAACGGGCGTGCGGGCACTCAGTCG-GCTGAAGAGGTAGAATGCGTAAGTCGGGGAT
191 AACCCACAAAACGAACGTGCGGGCACTCAGCCGATCAG-AGAGGTAGAATGCGTAAGCCGGGGAT
** *
24920757 CAACCCGGTCCCCCCTATATGCTGCCGCAACGCTCGGTCCGATCCAAT
255 CAACCCAATCCCCCCTATATGCTGCCGCAACCCTCGGTCCGATCCAAT
24920805 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
24920832 TTAGACTGGG
Statistics
Matches: 280, Mismatches: 46, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
305 43 0.15
306 2 0.01
307 5 0.02
310 1 0.00
311 3 0.01
313 1 0.00
314 92 0.33
315 27 0.10
316 106 0.38
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (302 bp):
CTTAGACTGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCACTTAGCC
GATCAAACAGGCAGAATGCGCAAGCCGAGGATCGAACCAATCCCCCCTGCATGCTGTCGATCCCG
CTGCCACACCCTCGGTCCGGTCCAAGCTTAGACTAGGAATGAACTCCCTATGCATAAGCCAACCC
ACAAAACGAACGTGCGGGCACTCAGCCGATCAGAGAGGTAGAATGCGTAAGCCGGGGATCAACCC
AATCCCCCCTATATGCTGCCGCAACCCTCGGTCCGATCCAAT
Found at i:24920834 original size:26 final size:26
Alignment explanation
Indices: 24920805--24920857 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24920795 CCGATCCAAT
24920805 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
24920831 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
24920857 C
1 C
24920858 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Done.