Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 254 of 402
Found at i:24921202 original size:26 final size:26
Alignment explanation
Indices: 24921173--24921225 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24921163 TCGGTCTAAT
*
24921173 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
24921199 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
24921225 C
1 C
24921226 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:24922327 original size:26 final size:26
Alignment explanation
Indices: 24922298--24922350 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24922288 CCGATCAAAT
*
24922298 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
24922324 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
24922350 C
1 C
24922351 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:24922678 original size:354 final size:360
Alignment explanation
Indices: 24922128--24922906 Score: 912
Period size: 367 Copynumber: 2.2 Consensus size: 360
24922118 ACAACCCCTT
* * * * * *
24922128 GTCCGACTGGGGTTTAGACATGAAATG-AGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGT
1 GTCCGGCTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCACGAAACGAGCAT
* * * * * **
24922192 GCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGTCAGGGATCGGCCCGGTCCCCCCTTTG
65 GCGGGCGCTCAGCCGGTCGAAAAGGCAGAATGCGTAAGTCAGGGATCGACCCGATCCCCCCTACG
* *
24922257 TGCTGTCGATCCTACTATCGCAACCTTCGGTCCGATCAAATCTTAGACTAGGAATGAACTCCGTA
130 TGCTGTCGATCCTACTATCGCAACCCTCGATCCGATCAAATCTTAGACTAGGAATGAACTCCGTA
* * *
24922322 TGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAACGTGTAGGCGCTCA
195 TGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACACACAAAACGAACGTGCAGGAGCTCA
* ** * * *
24922387 -GTC-G-A-T-TGGAGAGGCATAATGCGTAAGCTGGGGATCAGCCC-AGTCCCCCTCTGCATGCT
260 GGTCGGAAGTACGGAGAGGCATAATGCACAAGCTAGGGATCAACCCGA-TCCCCCTCTACATGCT
* *
24922446 GCCGATCCTGCTACCGATCTTGCTGCCACAACCCTCG
324 GCCGATCCCGCTACCGATCCTGCTGCCACAACCCTCG
* *
24922483 GTTCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATG
1 GTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATG
* * * *
24922548 TGGGCGCTCAGTCGGTCGAAAAGGCAGAATGC-TCAAG-CTGGGGATCGATCCGAT-CCCCCTAC
66 CGGGCGCTCAGCCGGTCGAAAAGGCAGAATGCGT-AAGTC-AGGGATCGACCCGATCCCCCCTAC
* * ** ** *
24922610 GTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGGTTGGGAATGAACTCCGT
129 GTGCTGTCGATCCTACTATCGCAACCCTCGATCCGATCAAATCTTAGACTAGGAATGAACTCCGT
* ** *
24922675 ATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACACATGAAACGATCGTGCAGGAGCTC
194 ATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACACACAAAACGAACGTGCAGGAGCTC
* *
24922740 AGTCGGTCGGAAAGGCTGACCGGAGAGGCATAATGCACAAGTTAGGGATCAACCCGATCCCCCTT
259 A---GGTCGG-AA-G-T-A-CGGAGAGGCATAATGCACAAGCTAGGGATCAACCCGATCCCCCTC
** * *
24922805 TATGTGCTGCCGATCCCGCTGCCGGTCCTGCTGCCACAACCCTCG
316 TACATGCTGCCGATCCCGCTACCGATCCTGCTGCCACAACCCTCG
* * *
24922850 GTCCGGCTGGGGCTTAGACGTGGAATGTACTCTGTATGCTTAAGCCAACCCACGAAA
1 GTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAA
24922907 TGAGAGGTAG
Statistics
Matches: 353, Mismatches: 54, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
354 123 0.35
355 96 0.27
356 1 0.00
358 3 0.01
359 1 0.00
361 1 0.00
364 1 0.00
367 126 0.36
368 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (360 bp):
GTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATG
CGGGCGCTCAGCCGGTCGAAAAGGCAGAATGCGTAAGTCAGGGATCGACCCGATCCCCCCTACGT
GCTGTCGATCCTACTATCGCAACCCTCGATCCGATCAAATCTTAGACTAGGAATGAACTCCGTAT
GCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACACACAAAACGAACGTGCAGGAGCTCAG
GTCGGAAGTACGGAGAGGCATAATGCACAAGCTAGGGATCAACCCGATCCCCCTCTACATGCTGC
CGATCCCGCTACCGATCCTGCTGCCACAACCCTCG
Found at i:24923335 original size:26 final size:26
Alignment explanation
Indices: 24923299--24923351 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24923289 CCAGTCCGAT
24923299 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
24923325 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
24923351 C
1 C
24923352 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:24923698 original size:26 final size:26
Alignment explanation
Indices: 24923669--24923722 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
24923659 GGTCCGATCT
24923669 TAGACTGAGAATGAACTCCGTATGCC
1 TAGACTGAGAATGAACTCCGTATGCC
* *
24923695 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGAGAATGAACTCCGTATGCC
24923721 TA
1 TA
24923723 AGTCAACCCG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGACTGAGAATGAACTCCGTATGCC
Found at i:24924247 original size:369 final size:362
Alignment explanation
Indices: 24923278--24924429 Score: 1181
Period size: 368 Copynumber: 3.1 Consensus size: 362
24923268 CGTGCTGCCA
* * *
24923278 CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAAC
1 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
* * * ** * * *
24923343 TTCGTATGCCTAAGTCAACCCATGAAACGAGCGTCTGTGCATTCAGTCGACCGGAGAGGCCAATC
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTC-GGGCGCTCAGCCGACCGAAGAGGCCGATC
* * * * *
24923408 GAAGAGGCATAATGTGCAAGTTGGGGATCAACCTGGTCCCTCTCTGCATGCTACGGATCCCGTTG
130 GAAGAGGCATAATGTGCAAGTTGGGGATCAGCCCGATCCCCCTCTGCATGCTAC-GATCCCGCTG
* * * * * * * * * *
24923473 CCGGTCTTGCTGCCATAACTCTCGATCCAACTGGGGCTAAGACATGAAATGTACTTTGTATCCCT
194 CC-GTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTTCGTATGCCT
** * * ** * **
24923538 AAGCCAACCCACGAAACGAATGTGCGGGCACTCATCCAGTCGAAGAGGCAAAATGTGCAAG-TCG
258 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGTCG-AGAGGCAGAATGCACAAGCT-G
* ** * *
24923602 GGCATCGGCCCGGTTCTGCCTACATGC-TGTCGATCCTGCTGCCG
321 GG-ATCGGCCC-GATCCCCCT-TATGCTTGTCGATCCTGCTGTCG
* * * *
24923646 TAACCCTCGATTCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAGACTGGGGATGAAC
1 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
* * * * * *
24923711 TCCGTATGCCTAAGTCAACCCGCGAAACAAGCATACAGGCGCTTAGCCGACTGGAA-AGGCCGAT
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-CGGGCGCTCAGCCGAC-CGAAGAGGCCGAT
* * * * *
24923775 CGAAGAGGCATAATATGCAAGTCGGGGATTAGCCCAATCCCCCTCTGCGTGCTACCGATCCCGC-
129 CGAAGAGGCATAATGTGCAAGTTGGGGATCAGCCCGATCCCCCTCTGCATGCTA-CGATCCCGCT
* *
24923839 GACCGTTTCTGGTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTTCGTATGC
193 G-CCG-TCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTTCGTATGC
* * * * * *
24923904 CTCAA-CCTACCCATGAAACGAGCGTGCGGGTGCTTAGCTGGCCAGAGAGGCAGAACGCACAAGC
256 CT-AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGTC-GAGAGGCAGAATGCACAAG-
* * *
24923968 CTAGGATCGGCCTGATCCCCCTTGTGTCTTGTCGATCCTGCTGTCG
318 CTGGGATCGGCCCGATCCCCCTTATG-CTTGTCGATCCTGCTGTCG
* * *
24924014 CAACCCTTGATCCGGTCCGATCTTAAACTGGGAATGAACTCCGTATGCTTTAGATTGGGGATGAA
1 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC-TTAGACTGGGGATGAA
*
24924079 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCTGAT
65 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-CGGGCGCTCAGCCGACCGAAGAGGCCGAT
* * * * * *
24924144 CGAAGAGGTATAATGCGTAAGTTGGGGATCAGCCCGATCCCCCTCTGTC-TGCTGTCGATTCCAC
129 CGAAGAGGCATAATGTGCAAGTTGGGGATCAGCCCGATCCCCCTCTG-CATGCT-ACGATCCCGC
**
24924208 TGCCTGTCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACGTGGAATGTAC-TCTGTATG
192 TGCC-GTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTTC-GTATG
* * * *
24924272 CCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG-TCGATCGGAGAGGTAGAATACACAAG
255 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT-GGTC-GAGAGGCAGAATGCACAAG
* * *
24924336 CTGGAGATCGGCCCGAT-CCCC-TCTGCCTCTGTAGATCCTGCTGTTG
318 CTGG-GATCGGCCCGATCCCCCTTATG-CT-TGTCGATCCTGCTGTCG
* * * *
24924382 TAACCTTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
24924430 ATAAGTCAAC
Statistics
Matches: 644, Mismatches: 118, Indels: 44
0.80 0.15 0.05
Matches are distributed among these distances:
366 2 0.00
367 14 0.02
368 385 0.60
369 239 0.37
370 4 0.01
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.22
Consensus pattern (362 bp):
CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTCGGGCGCTCAGCCGACCGAAGAGGCCGATCG
AAGAGGCATAATGTGCAAGTTGGGGATCAGCCCGATCCCCCTCTGCATGCTACGATCCCGCTGCC
GTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTTCGTATGCCTAAG
CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGTCGAGAGGCAGAATGCACAAGCTGGGATC
GGCCCGATCCCCCTTATGCTTGTCGATCCTGCTGTCG
Found at i:24924935 original size:26 final size:26
Alignment explanation
Indices: 24924906--24924959 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
24924896 GATCCGATCT
24924906 TAGACTGAGAATGAACTCCGTATGCC
1 TAGACTGAGAATGAACTCCGTATGCC
* * *
24924932 TAGACTGGGGATGAACTTCGTATGCC
1 TAGACTGAGAATGAACTCCGTATGCC
24924958 TA
1 TA
24924960 AATCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTGAGAATGAACTCCGTATGCC
Found at i:24926389 original size:159 final size:159
Alignment explanation
Indices: 24926014--24926413 Score: 396
Period size: 158 Copynumber: 2.5 Consensus size: 159
24926004 AACCCTGTAT
*
24926014 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * *** * * * *
24926079 TCGGTTGGAAAGGTAGAACGCGCAAGTCGGGGATCGACCCAGTCCCCCCTGCGTACTGTGAATCC
66 ACCGACCGAAAGGCAGAAAGCACAAGTCGAGGATCGACCCAGTCCCCCCTGCGTACTGTGAATCC
** ** ** *
24926144 TGCTACTGCAACCCTCGATCTGGTCTGAT
131 CACTACCACAACCCTCGATCCAGTCTGAG
* * * * *
24926173 G-TTAGAC-TAGGAATGAACTCCGTATGCATAGGTCAACCCATGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
* * *
24926236 -ACCGACCGAAGAGGCATAAAGCACAAGTCGAGGATCGACTCAGTCCCCCTCTGCGTGCTGCTG-
65 GACCGACCGAA-AGGCAGAAAGCACAAGTCGAGGATCGACCCAGTCCCCC-CTGCGTACTG-TGA
* * *
24926299 GTCCCACTACCACAACCCTCGGTCCAGT-TGGG
127 ATCCCACTACCACAACCCTCGATCCAGTCTGAG
* * * * *
24926331 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * *
24926396 TCGGACGGAGAGGCAGAA
66 ACCGACCGAAAGGCAGAA
24926414 TGTGCAAGTC
Statistics
Matches: 192, Mismatches: 42, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.03
158 89 0.46
159 88 0.46
160 9 0.05
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
ACCGACCGAAAGGCAGAAAGCACAAGTCGAGGATCGACCCAGTCCCCCCTGCGTACTGTGAATCC
CACTACCACAACCCTCGATCCAGTCTGAG
Found at i:24926422 original size:159 final size:159
Alignment explanation
Indices: 24926014--24926454 Score: 428
Period size: 159 Copynumber: 2.8 Consensus size: 159
24926004 AACCCTGTAT
*
24926014 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
** * * * *
24926079 TCGGTTGGAAAGGTAGAACGCGCAAGTCGGGGATCGACCCAGTCCCCCCTGCGTACTGTGAATCC
66 TCGGACGGAGAGGCAGAAAGCGCAAGTCGAGGATCGACCCAGTCCCCCCTGCGTACTGTGAATCC
** ** ** *
24926144 TGCTACTGCAACCCTCGATCTGGTCTGAT
131 CACTACCACAACCCTCGATCCAGTCTGAG
* * * * *
24926173 G-TTAGAC-TAGGAATGAACTCCGTATGCATAGGTCAACCCATGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
* * * * * * *
24926236 -ACCGACCGAAGAGGCATAAAGCACAAGTCGAGGATCGACTCAGTCCCCCTCTGCGTGCTGCTG-
65 GTCGGA-CGGAGAGGCAGAAAGCGCAAGTCGAGGATCGACCCAGTCCCCC-CTGCGTACTG-TGA
* * *
24926299 GTCCCACTACCACAACCCTCGGTCCAGT-TGGG
127 ATCCCACTACCACAACCCTCGATCCAGTCTGAG
* * * * *
24926331 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * *
24926396 TCGGACGGAGAGGCAGAATGTGCAAGTC-AGGGATC-AGCCCGGTCTCCCCTGCGTGCTGT
66 TCGGACGGAGAGGCAGAAAGCGCAAGTCGA-GGATCGA-CCCAGTCCCCCCTGCGTACTGT
24926455 CGATCCTACT
Statistics
Matches: 225, Mismatches: 48, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
157 4 0.02
158 103 0.46
159 112 0.50
160 6 0.03
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
TCGGACGGAGAGGCAGAAAGCGCAAGTCGAGGATCGACCCAGTCCCCCCTGCGTACTGTGAATCC
CACTACCACAACCCTCGATCCAGTCTGAG
Found at i:24926874 original size:26 final size:26
Alignment explanation
Indices: 24926845--24926897 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24926835 CTGGTTCGAT
*
24926845 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
24926871 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
24926897 C
1 C
24926898 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:24927215 original size:26 final size:26
Alignment explanation
Indices: 24927179--24927231 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24927169 CCAGTCTGAT
24927179 CTTAGACTGGGAATGAACTCCGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
* *
24927205 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
24927231 C
1 C
24927232 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:24927282 original size:334 final size:334
Alignment explanation
Indices: 24926652--24927303 Score: 869
Period size: 334 Copynumber: 2.0 Consensus size: 334
24926642 ATCCTGCTGT
*
24926652 CGGTCCTGCTACCACAACCCTCAGTCTGGCTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTA
1 CGGTCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTA
* * ** ** *
24926717 AGCCAACCCACAAAACAAGCGTGTGGGCGCTCAACCGGCTGAAGAGGCAGAATGTGCAAGCCAGT
66 AGCCAACCCACAAAACAAGCGTGCGGGCGCTCAACCGACCAAAGAGGCAGAATGCACAAGCCAGG
* * **
24926782 GATCGGCCCAGTCCCCCCTGCATGCTGTCGATCCTGCTACTGCAACCCTCAATCTGGTTCGATCT
131 GATCGGCCCAGTCCCCCCTACATGCTGTCGATCATGCTACTGCAACCCTCAATCCAGTTCGATCT
* * *
24926847 TAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAT
196 TAGACTGGGAATGAACTCCGAATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * *
24926912 GAAACGAGCGTGCTGCCGCTCAACCGGCCGGAGAGGCATAATGTGCAATCCGGAGATCAGCCTGA
261 AAAACGAGCGTACGGCCGCTCAACCGACCAGAGAGGCAGAATGTGCAAGCCGGAGATCAGCCTGA
24926977 TCCCGTTGC
326 TCCCGTTGC
* * *
24926986 CGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTACTTTGTATGCCTA
1 CGGTCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTA
** * * * *
24927051 AGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGATGCAGAATGCACAAGCCGGG
66 AGCCAACCCACAAAACAAGCGTGCGGGCGCTCAACCGACCAAAGAGGCAGAATGCACAAGCCAGG
* * * * *
24927116 GATCGGTCCAGTCCCCCCTACGTGCTG-CTGATCATGTTA-TCGTAACCCTCGATCCAG-TCTGA
131 GATCGGCCCAGTCCCCCCTACATGCTGTC-GATCATGCTACT-GCAACCCTCAATCCAGTTC-GA
*
24927178 TCTTAGACTGGGAATGAACTCCGAATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
193 TCTTAGACTGGGAATGAACTCCGAATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACC
* * ** * *
24927243 CACAAAATGAGCGTACGGGCGCTCAGTCGACCAGAGAGGCAGGATGTGCAAGCCGGGGATC
258 CACAAAACGAGCGTACGGCCGCTCAACCGACCAGAGAGGCAGAATGTGCAAGCCGGAGATC
24927304 GAACGGGTGG
Statistics
Matches: 272, Mismatches: 43, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
333 4 0.01
334 268 0.99
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (334 bp):
CGGTCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTA
AGCCAACCCACAAAACAAGCGTGCGGGCGCTCAACCGACCAAAGAGGCAGAATGCACAAGCCAGG
GATCGGCCCAGTCCCCCCTACATGCTGTCGATCATGCTACTGCAACCCTCAATCCAGTTCGATCT
TAGACTGGGAATGAACTCCGAATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAC
AAAACGAGCGTACGGCCGCTCAACCGACCAGAGAGGCAGAATGTGCAAGCCGGAGATCAGCCTGA
TCCCGTTGC
Found at i:24928454 original size:157 final size:157
Alignment explanation
Indices: 24928012--24928756 Score: 530
Period size: 159 Copynumber: 4.6 Consensus size: 157
24928002 GGTAGAATTT
* * * ** * * *
24928012 GCAAGCCGAGGATCGACCCGGTCCCCCCCTATGTGCTGTCGATCCTGCTGTCGCAACCTTCGGTC
1 GCAAGCCGGGGATCGGCCCGATCCCCCTATACGTGCTGTCGATCTTGCTGTCGCAACCCTC-GTC
* * * * * *
24928077 CGGTCCGATCTTATACTGGGAACGAACTCCGTATGCTTAAGTGAACCCACGAAACGAGCGTGCAA
65 CGAT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGA
* *
24928142 GTGCTGAGCCGACCGAAGAGGCATAATGC
129 GTGCTCAGCCGACCGGAGAGGCATAATGC
* * * * * * * * * *
24928171 GCAAGCTGGGGATCGGCCCGGTCCCCCTCTACATGTTGCCGGTCTCGCTGCCACAACCCTCGATC
1 GCAAGCCGGGGATCGGCCCGATCCCCCTATACGTGCTGTCGATCTTGCTGTCGCAACCCTCG-TC
* * ** * * * * *
24928236 CGGCTGGCGCTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCG
65 C-GATCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * *
24928300 AGAGCTCAGCCAACCGGAGAGGCAGAATGC
128 AGTGCTCAGCCGACCGGAGAGGCATAATGC
* * *
24928330 GCAAGCCGGGGATCGGCCTGATCCCCC-ATGCGTGCTGTCGATCTTGCTGTCGTAACCCTCAGTC
1 GCAAGCCGGGGATCGGCCCGATCCCCCTATACGTGCTGTCGATCTTGCTGTCGCAACCCTC-GTC
*
24928394 CGATCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGTG
65 CGATCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAG
*
24928459 TGCTCAAG-CGATCGGAGAGGCATAATGC
130 TGCTC-AGCCGACCGGAGAGGCATAATGC
* * * * * * *
24928487 GCAAGCCAGGGATCAGCCCGATCCCCCTCTACATGCTGCCAATCTCGCTACTGGTCTTGCTACCA
1 GCAAGCCGGGGATCGGCCCGATCCCCCTATACGTGCTGTCGATCT---TGCT-GTC--GC-A--A
* * ** * ** *
24928552 CAATCCTCGGTCCGGCTGGGGCTTAGACAT-TGAATCTACTCCGTATGCCTAAGCCAACCCACGA
57 C---CCTC-GTCC-GATCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * * * *
24928616 AATGAGCGTGCGGGCGCTCAGTCGGCTGGAAAGGTAGAATGC
116 AACGAGCGTGCGAGTGCTCAGCCGACCGGAGAGGCATAATGC
* * * * * ** * * *
24928658 GCAAGTCGGTGATCGACTCGGTCCCCCT-TACGTGCTGTTAATCCTGCTG-CGTAACCTTCGATC
1 GCAAGCCGGGGATCGGCCCGATCCCCCTATACGTGCTGTCGATCTTGCTGTCGCAACCCTCG-TC
*
24928721 CGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
65 C-GATCGATCTTAGACTGGGAATGAACTCCGTATGC
24928757 TTAGACTGGG
Statistics
Matches: 453, Mismatches: 109, Indels: 50
0.74 0.18 0.08
Matches are distributed among these distances:
156 3 0.01
157 129 0.28
158 41 0.09
159 144 0.32
160 5 0.01
161 3 0.01
162 4 0.01
163 1 0.00
164 1 0.00
165 2 0.00
166 1 0.00
167 5 0.01
170 22 0.05
171 91 0.20
172 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.21
Consensus pattern (157 bp):
GCAAGCCGGGGATCGGCCCGATCCCCCTATACGTGCTGTCGATCTTGCTGTCGCAACCCTCGTCC
GATCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGT
GCTCAGCCGACCGGAGAGGCATAATGC
Found at i:24928514 original size:316 final size:321
Alignment explanation
Indices: 24927937--24928756 Score: 838
Period size: 328 Copynumber: 2.6 Consensus size: 321
24927927 AGCTCCGTAT
* * *
24927937 GCTTAGACATGGAAT-GAACTCCGTATGCCTAAGCCAAGCCACGGAACGAGCGTGCG-G-GC-CA
1 GCTTAGACATGGAATCG-ACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGAGCTCA
* ** * * * * *
24927998 G---A---G--AGGTAGAATTTGCAAGCCGAGGATCGACCCGGTCCCCCCCTATGTGCTGTCGAT
65 GCCAACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACTCGAT-CCCCCATACGTGCTGTCGAT
* * * * * *
24928055 CCTGCTGTCGCAACCTTCGGTCCGGTCCGATCTTATACTGGGAACGAACTCCGTATGCTTAAGTG
129 CCTGCTGTCGTAACCTTC-GTCCGAT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* **
24928120 AACCCACGAAACGAGCGTGCAAGTGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCTGGGGATC
192 AACCCACGAAACGAGCGTGCAAGTGCTAAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATC
* * *
24928185 GGCCCGGTCCCCCTCTACA-TG-T-T-GC-C-GGTCTCGCTGCCACAACCCTCGATCCGGCTGGC
257 AGCCCGATCCCCCTCTACACTGATCTCGCACTGGTCTCGCTACCACAACCCTCGATCCGGCTGGC
* *
24928244 GCTTAGACATGGAAT-GAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGAGCTCA
1 GCTTAGACATGGAATCGA-CTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGAGCTCA
* * *
24928308 GCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC-CTGATCCCCCATGCGTGCTGTCGAT
65 GCCAACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACTC-GATCCCCCATACGTGCTGTCGAT
* *
24928372 CTTGCTGTCGTAACCCTCAGTCCGATCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
129 CCTGCTGTCGTAACCTTC-GTCCGATCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * *
24928437 ACCCACGAAACGAGCGTGCGTGTGCTCAAG-CGATCGGAGAGGCATAATGCGCAAGCCAGGGATC
193 ACCCACGAAACGAGCGTGCAAGTGCT-AAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATC
* * *
24928501 AGCCCGATCCCCCTCTACATGCTGCCAATCTCGCTACTGGTCTTGCTACCACAATCCTCGGTCCG
257 AGCCCGATCCCCCTCTACA--CTG---ATCTCGC-ACTGGTCTCGCTACCACAACCCTCGATCCG
*
24928566 GCTGGG
316 GCTGGC
* * * * * *
24928572 GCTTAGACATTGAATCTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATCGACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGAGCTCAG
* ** * * * * * * **
24928637 TCGGCTGGAAAGGTAGAATGCGCAAGTCGGTGATCGACTCGGTCCCCCTTACGTGCTGTTAATCC
66 CCAACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCATACGTGCTGTCGATCC
*
24928702 TGCTG-CGTAACCTTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
131 TGCTGTCGTAACCTTCG-TCC-GATCGATCTTAGACTGGGAATGAACTCCGTATGC
24928757 TTAGACTGGG
Statistics
Matches: 421, Mismatches: 62, Indels: 39
0.81 0.12 0.07
Matches are distributed among these distances:
306 1 0.00
307 49 0.12
308 1 0.00
309 2 0.00
310 3 0.01
313 1 0.00
316 107 0.25
317 41 0.10
318 25 0.06
319 2 0.00
323 1 0.00
324 1 0.00
325 2 0.00
326 1 0.00
327 13 0.03
328 169 0.40
329 2 0.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (321 bp):
GCTTAGACATGGAATCGACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGAGCTCAG
CCAACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCATACGTGCTGTCGATCC
TGCTGTCGTAACCTTCGTCCGATCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCAAGTGCTAAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCC
CGATCCCCCTCTACACTGATCTCGCACTGGTCTCGCTACCACAACCCTCGATCCGGCTGGC
Found at i:24928759 original size:26 final size:26
Alignment explanation
Indices: 24928730--24928782 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24928720 CCGGTTCGAT
24928730 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24928756 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24928782 C
1 C
24928783 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24929058 original size:354 final size:354
Alignment explanation
Indices: 24928402--24929189 Score: 1003
Period size: 354 Copynumber: 2.2 Consensus size: 354
24928392 TCCGATCGAT
* *
24928402 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGTGTGCTCAAG
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC-AG
* * *
24928467 CGATCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTACATGCTGCCAATCT
65 CGATCGGAGAGGCACAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTACATGCTGCCAATCC
* * * * * *
24928532 CGCTACTGGTCTTGCTACCACAATCCTCGGTCCGGCTGGGGCTTAGACATTGAATCTACTCCGTA
130 CGCTACTGATCCTGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATCTACTCCATA
* * * * *
24928597 TGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCTGGAAAGGTAGAATGCGCAA
195 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAAAGGCAGAATGCGCAA
* * * * * * *
24928662 GTCGGTGATCGACTCGGTCCCCCTTACGTGCTGTTAATCCTGCTGC-GTAACCTTCGATCCGGTT
260 GCCAGTGATCGACTCGATCCCCCCTACGTGCTGTCAATCCTGCTGCAGTAACCCTCGATCCGGTC
*
24928726 CGATCTTAGACTGGGAATGAACTCCGTATG
325 CGATCTTAGACTGGGAATGAACTCCATATG
* *
24928756 CTTAGACTGGGGATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGTGTGCGGGTGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG-
* * * * * * *
24928821 CGGTCGGAGAGGCACAATGCGCAAGCCAAGGATCAGCCTGGTCCCTCTCTGCATGCTGTCGATCC
65 CGATCGGAGAGGCACAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTACATGCTGCCAATCC
** * * *
24928886 CG-TTGTCGATCCT-CTTGCCACAACCCTCGATCTGGTTGGGGCTTAGACATGGAA-CGTACTCC
130 CGCTACT-GATCCTGC-TACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATC-TACTCC
*
24928948 ATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCAGAATGCG
192 ATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAAAGGCAGAATGCG
* * *
24929013 CAAGCCAAG-GATCGGC-CTGATCCCCCCTGCGTGCTGTCGATCCTGCTGCAGTAACCCTCGATC
257 CAAGCC-AGTGATCGACTC-GATCCCCCCTACGTGCTGTCAATCCTGCTGCAGTAACCCTCGATC
*
24929076 TGGTCCGATCTTAGACTGGGAATGAACTCCATATG
320 CGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * * *
24929111 CTTATACTGGGGATGAACTCCTTATGCCTAGGTCAACCCATGAAACGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG-
**
24929176 CGATTAGAGAGGCA
65 CGATCGGAGAGGCA
24929190 GGATGTGCAA
Statistics
Matches: 372, Mismatches: 55, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
353 7 0.02
354 253 0.68
355 112 0.30
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (354 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
GATCGGAGAGGCACAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTACATGCTGCCAATCCC
GCTACTGATCCTGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATCTACTCCATAT
GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAAAGGCAGAATGCGCAAG
CCAGTGATCGACTCGATCCCCCCTACGTGCTGTCAATCCTGCTGCAGTAACCCTCGATCCGGTCC
GATCTTAGACTGGGAATGAACTCCATATG
Found at i:24929121 original size:26 final size:26
Alignment explanation
Indices: 24929085--24929137 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24929075 CTGGTCCGAT
24929085 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
24929111 CTTATACTGGGGATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
24929137 C
1 C
24929138 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24929942 original size:159 final size:156
Alignment explanation
Indices: 24929778--24930314 Score: 474
Period size: 158 Copynumber: 3.4 Consensus size: 156
24929768 GGCATCATGT
** * * *
24929778 GCAAGCCAGGGATCAGCCCGGTCCCTTTCTGTGTGCTGTCGATCTCGCTACCACAACCCTCAGTC
1 GCAAGCCAGGGATC-GCCCGGTCCCCCTCTGCGTGCTGCCGATC-CGCTGCCACAACCCTC-GTC
*
24929843 CGGTTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGACATGCGG
63 CGGTTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGACATGTGG
** * *
24929908 GCACTCAGCGGGCAGGAGAGGCAGAATGC
128 GCGTTCAGCAGGCAGGAGAGGCAAAATGC
* ** * * *
24929937 ACAAGCTGGGGATCGGCCCGAT-CCCCTCTGCATGCTGCCGATCCTGCTGTCACAACCCTCGGTC
1 GCAAGCCAGGGATC-GCCCGGTCCCCCTCTGCGTGCTGCCGATCC-GCTGCCACAACCCTC-GTC
** * * * * * *
24930001 CGGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATACATAAGTCAACCCACGAAAC-GAGCGTG
63 CGGT-TGGGGCTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGA-CATG
* * * *
24930063 TGGGTGTTGAGCCAGTCA-GAGAGGCATAATGC
125 TGGGCGTTCAG-CAGGCAGGAGAGGCAAAATGC
* * * *
24930095 GCAAGCCGGGGATCGACCCAGTCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACAACCCTCGATC
1 GCAAGCCAGGGATCG-CCCGGTCCCCCTCTGCGTGCTGCCGAT-CCGCTGCCACAACCCTCG-TC
*** * * *
24930160 CAACTGGGGCTTAGACATGGAATCAGCTCCCTATGCCTAAGGCAACCCACGAAACGGGCATGTGG
63 CGGTTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGACATGTGG
* * *
24930225 GCGTTCAGCCGGCCGGAGAGGAAAAATGC
128 GCGTTCAGCAGGCAGGAGAGGCAAAATGC
* * * * **
24930254 GCAAGCTAAGGATCCGCCCGGTCCCCCT-TGTGTGCTGTCGATCCTGCTGCCGTAACCCTCG
1 GCAAGCCAGGGAT-CGCCCGGTCCCCCTCTGCGTGCTGCCGATCC-GCTGCCACAACCCTCG
24930315 GTCTGGTCTG
Statistics
Matches: 296, Mismatches: 67, Indels: 31
0.75 0.17 0.08
Matches are distributed among these distances:
157 7 0.02
158 143 0.48
159 140 0.47
160 6 0.02
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (156 bp):
GCAAGCCAGGGATCGCCCGGTCCCCCTCTGCGTGCTGCCGATCCGCTGCCACAACCCTCGTCCGG
TTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGACATGTGGGCG
TTCAGCAGGCAGGAGAGGCAAAATGC
Found at i:24930047 original size:158 final size:158
Alignment explanation
Indices: 24929653--24930352 Score: 567
Period size: 159 Copynumber: 4.4 Consensus size: 158
24929643 ACCCATTGCA
* * * *
24929653 TGCTGTCGATCCTGCTGCCGCAACCCTCGGTCC-GTCCGATTTTAGATTGGGAATGAACTCCGTA
1 TGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCCGTA
* * * ** * * *
24929717 TGCATAAGTCAACCTACGAAACGAGCGTGCGGGCGTTGAGCCGATC-GAAGAGGCATCATGTGCA
65 TGCATAAGTCAACCCACGAAACGAGCATGCGGGCGTTCAGCCGGGCAGGAGAGGCATAATGCGCA
* * * *
24929781 AGCCAGGGATCAGCCCGGTCCCTTTCTGTG
130 AGCCAGGGATCGGCCCGATCCC-CTCTGCG
* * ** * *
24929811 TGCTGTCGAT-CTCGCTACCACAACCCTCAGTCCGGT-TGGGGCTTAGACATGGAATGAGCTCCC
1 TGCTGTCGATCCT-GCTGCCACAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGAATGAACTCCG
* * ** *
24929874 TATGCCTAAGCCAACCCACGAAACG-GACATGCGGGCACTCAG-CGGGCAGGAGAGGCAGAATGC
63 TATGCATAAGTCAACCCACGAAACGAG-CATGCGGGCGTTCAGCCGGGCAGGAGAGGCATAATGC
* ** *
24929937 ACAAGCTGGGGATCGGCCCGATCCCCTCTGCA
127 GCAAGCCAGGGATCGGCCCGATCCCCTCTGCG
* *
24929969 TGCTGCCGATCCTGCTGTCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
1 TGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCCGTA
* * * * * * *
24930034 TACATAAGTCAACCCACGAAACGAGCGTGTGGGTGTTGAGCCAGTCA-GAGAGGCATAATGCGCA
65 TGCATAAGTCAACCCACGAAACGAGCATGCGGGCGTTCAGCCGGGCAGGAGAGGCATAATGCGCA
* * *
24930098 AGCCGGGGATCGACCC-AGTCCCCCTCTACG
130 AGCCAGGGATCGGCCCGA-T-CCCCTCTGCG
* * * * ** ** * * *
24930128 TGCTGCCGGTCCCGCTGCCACAACCCTCGATCC-AACTGGGGCTTAGACATGGAATCAGCTCCCT
1 TGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGAATGAACTCCGT
* * * * * * *
24930192 ATGCCTAAGGCAACCCACGAAACGGGCATGTGGGCGTTCAGCC-GGCCGGAGAGGAAAAATGCGC
64 ATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGTTCAGCCGGGCAGGAGAGGCATAATGCGC
* * * * *
24930256 AAGCTAAGGATCCGCCCGGTCCCC-CTTGTG
129 AAGCCAGGGATCGGCCCGATCCCCTC-TGCG
** * * *
24930286 TGCTGTCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTAGCAGTGAACTCCGTA
1 TGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCCGTA
24930351 TG
65 TG
24930353 TTTAGACTGG
Statistics
Matches: 420, Mismatches: 102, Indels: 40
0.75 0.18 0.07
Matches are distributed among these distances:
157 6 0.01
158 200 0.48
159 212 0.50
160 2 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
TGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCCGTAT
GCATAAGTCAACCCACGAAACGAGCATGCGGGCGTTCAGCCGGGCAGGAGAGGCATAATGCGCAA
GCCAGGGATCGGCCCGATCCCCTCTGCG
Found at i:24930298 original size:317 final size:317
Alignment explanation
Indices: 24929649--24930351 Score: 896
Period size: 317 Copynumber: 2.2 Consensus size: 317
24929639 CAGCACCCAT
* * *
24929649 TGCATGCTGTCGATCCTGCTGCCGCAACCCTCGGTCC-GTCCGATTTTAGATTGGGAATGAACTC
1 TGCATGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
* * * *
24929713 CGTATGCATAAGTCAACCTACGAAACGAGCGTGCGGGCGTTGAGCCGATCGAAGAGGCATCATGT
66 CGTATACATAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGCCGATCGAAGAGGCATAATGC
* ** ** * *
24929778 GCAAGCCAGGGATCAGCCCGGTCCCTTTCTGTGTGCTGTCGATCTCGCTACCACAACCCTCAGTC
131 GCAAGCCAGGGATCAGCCCAGTCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCAGTC
*** *
24929843 CGGTTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGACATGCGG
196 CAACTGGGGCTTAGACATGGAATCAGCTCCCTATGCCTAAGCCAACCCACGAAACGGACATGCGG
* * * ** *
24929908 GCACTCAGCGGGCAGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGATCCCCTC
261 GCACTCAGCCGGCAGGAGAGGAAAAATGCACAAGCTAAGGATCCGCCCGATCCCCTC
* * *
24929965 TGCATGCTGCCGATCCTGCTGTCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
1 TGCATGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
* *
24930030 CGTATACATAAGTCAACCCACGAAACGAGCGTGTGGGTGTTGAGCC-AGTC-AGAGAGGCATAAT
66 CGTATACATAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGCCGA-TCGA-AGAGGCATAAT
* * *
24930093 GCGCAAGCCGGGGATC-GACCCAGTCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACAACCCTC-
129 GCGCAAGCCAGGGATCAG-CCCAGTCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCA
* *
24930156 GATCCAACTGGGGCTTAGACATGGAATCAGCTCCCTATGCCTAAGGCAACCCACGAAACGGGCAT
193 G-TCCAACTGGGGCTTAGACATGGAATCAGCTCCCTATGCCTAAGCCAACCCACGAAACGGACAT
* ** * * *
24930221 GTGGGCGTTCAGCCGGCCGGAGAGGAAAAATGCGCAAGCTAAGGATCCGCCCGGTCCCC-C
257 GCGGGCACTCAGCCGGCAGGAGAGGAAAAATGCACAAGCTAAGGATCCGCCCGATCCCCTC
** * * * * *
24930281 TTGTGTGCTGTCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTAGCAGTGAACT
1 -TGCATGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
24930346 CCGTAT
65 CCGTAT
24930352 GTTTAGACTG
Statistics
Matches: 331, Mismatches: 50, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
316 39 0.12
317 292 0.88
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (317 bp):
TGCATGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
CGTATACATAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAGCCGATCGAAGAGGCATAATGC
GCAAGCCAGGGATCAGCCCAGTCCCCCTCTACGTGCTGCCGATCCCGCTACCACAACCCTCAGTC
CAACTGGGGCTTAGACATGGAATCAGCTCCCTATGCCTAAGCCAACCCACGAAACGGACATGCGG
GCACTCAGCCGGCAGGAGAGGAAAAATGCACAAGCTAAGGATCCGCCCGATCCCCTC
Found at i:24931595 original size:26 final size:26
Alignment explanation
Indices: 24931566--24931618 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24931556 CCGGTCCGAT
24931566 CTTAGACTAGAAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
* * **
24931592 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
24931618 C
1 C
24931619 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:24931787 original size:26 final size:26
Alignment explanation
Indices: 24931729--24931790 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
24931719 CCCTCGATCC
24931729 ACTCCG-AT-CTTAGACTGGGATTTCA
1 ACTCCGTATGCTTAGACTGGGA-TTCA
* *
24931754 ACTTCGTATGCTTAGACTAGGGA-TGA
1 ACTCCGTATGCTTAGACT-GGGATTCA
24931780 ACTCCGTATGC
1 ACTCCGTATGC
24931791 CTAAGTCATG
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 5 0.16
26 14 0.45
27 8 0.26
28 4 0.13
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (26 bp):
ACTCCGTATGCTTAGACTGGGATTCA
Found at i:24932778 original size:158 final size:158
Alignment explanation
Indices: 24932475--24932985 Score: 424
Period size: 158 Copynumber: 3.2 Consensus size: 158
24932465 TTGGGAATGA
* * * * * *
24932475 GCTCCGTATGCTTAGACAT-GGAATGAACTTCGTATGCCTAAACCAACCCACAAAACGAGCGTGC
1 GCTCCG-AT-CTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCATGC
* ** ** * * * *
24932539 GGGGGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGTC-AGGGATC-GACCCGGTCCCCCCTGCG
63 GAGCACTCAACCGATCGAAGAGGCAGAATACGCAAGCCGA-GGATCAG-CCCGGTCCCCCCTGCG
* *
24932602 TGCTGTCGATCCTACTGCCGCAACCCTCGGTCT
126 TGCTATCGATCCTGCTGCCGCAACCCTCGGTCT
* *
24932635 GCTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGC-AG
1 GCTCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCATGCGAG
* * * ** * * *
24932699 ACACTGAGCCGATCGAAGAGGCATAATGTGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGC
66 -CACTCAACCGATCGAAGAGGCAGAATACGCAAGCCGAGGATCAGCCCGGTCCCCC-CTGCGTGC
* * * *
24932764 TACCGATCC-GCTGCCACAACCCTCGATCCA
129 TATCGATCCTGCTGCCGCAACCCTCGGT-CT
* ** * * * *
24932794 GCT-GGGGCTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGA
1 GCTCCGATCTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCATGCGA
* * * * * * *
24932857 GCACTCAATCGGTCGGAGAGGGAGAATACGCAAGTCGGGGATCAGCCCGGTCCTCCCTGCGTGCT
65 GCACTCAACCGATCGAAGAGGCAGAATACGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCT
* * *
24932922 ATCGATCCTGTTGCTGCAACCCTTGGTCT
130 ATCGATCCTGCTGCCGCAACCCTCGGTCT
* * * *
24932951 GATCCGATTTTAGATTGGGATTGAACTCCATATGC
1 GCTCCGATCTTAGACTGGGAATGAACTCCATATGC
24932986 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 63, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 22 0.08
158 223 0.81
159 26 0.09
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTCCGATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCATGCGAG
CACTCAACCGATCGAAGAGGCAGAATACGCAAGCCGAGGATCAGCCCGGTCCCCCCTGCGTGCTA
TCGATCCTGCTGCCGCAACCCTCGGTCT
Found at i:24933373 original size:26 final size:27
Alignment explanation
Indices: 24933321--24933374 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
24933311 CCGGTCCGAT
24933321 CTTAGACTGGGGATGAAACTCCGTATG
1 CTTAGACTGGGGATGAAACTCCGTATG
24933348 CTTAGACTGGGGATG-AACTCCGTATG
1 CTTAGACTGGGGATGAAACTCCGTATG
24933374 C
1 C
24933375 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 12 0.44
27 15 0.56
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (27 bp):
CTTAGACTGGGGATGAAACTCCGTATG
Found at i:24933536 original size:356 final size:356
Alignment explanation
Indices: 24932643--24933765 Score: 1080
Period size: 362 Copynumber: 3.2 Consensus size: 356
24932633 CTGCTCCGAT
* * * * *
24932643 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCAGACACT--GA
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGA
* * * * * * * *
24932706 -GCCGATCGAAGAGGCATAATGTGCAAGCCGAGGATCGGTCGGGT-CCCC-CT-C-TG----CG-
66 GGCAG-TCGGAGAGGCATAATGCGCAAGCCGAAGATCAGCCCGATCCCCCTCTACATGCTACCGA
*
24932761 T---GCTACC-GATCC-GCTGCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATG-AGCT
130 TCCCGCTACCAG-TCCTGCTGCCACAACCCTCG-TCCGGCTGGGGCTTAGACATGGAATGTA-CT
* * * * * *
24932820 CCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAATC-GGTCGGAGAGGGAGAAT
192 CCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC-AGCAGGTCGGAGAGGCAGAAT
* * ** * * * *
24932884 ACGCAAGTCGGGGATCAGCCCGGT-CCTCCCTGCGTGCTATCGATCCTGTTG-CTGCAACCCTTG
256 GCGCAAGCCGGGGATTGGCCCAGTCCCT-CCTGCGTGCTGTCGATCCTGCTGTC-GCAACCCTCG
* * * *
24932947 GTCTGATCCGATTTTAGA-TTGGGATTGAACTCCATATG
319 ATCCGGTCCGATTTTAGACTGGGGA-TGAACTCCATATG
** * * *
24932985 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGTAGGCGCT-CAGTCGAC-
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG-A-GC-ATGCGGGCG-CT
* * *
24933048 CGGAGAGGCCAGTCGGAGAGGCATAATGCGCAAGTCGAAGATTAGCCCGATCCCCCTCTGCATGC
62 C--AGAGG-CAGTCGGAGAGGCATAATGCGCAAGCCGAAGATCAGCCCGATCCCCCTCTACATGC
** * * * * * * *
24933113 TGTCGATCCCGCTATCGGTCCTACTACCACAACCCCCGGTCCGACTGGGGCTTAGACATGAAATG
124 TACCGATCCCGCTACCAGTCCTGCTGCCACAACCCTC-GTCCGGCTGGGGCTTAGACATGGAATG
* * *
24933178 TACTCCGTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGCAGGTTGGAGAGGCAG
188 TACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCAGGTCGGAGAGGCAG
* ** * *
24933243 AATGCGCAAGCCGGGGATTGGTCCAGTCCCTCCTATGTGCTGCCGATCCTCCTGTCGCAACCCTC
253 AATGCGCAAGCCGGGGATTGGCCCAGTCCCTCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTC
* *
24933308 GATCCGGTCCGATCTTAGACTGGGGATGAAACTCCGTATG
318 GATCCGGTCCGATTTTAGACTGGGGATG-AACTCCATATG
*
24933348 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGA
* * * * * *
24933413 TG-A-TCGGAGAGGCATAATGCGCAAGCC-AGGGATCAGTCCGGTCCCTCTCTACGTGCTACCGA
66 GGCAGTCGGAGAGGCATAATGCGCAAGCCGA-AGATCAGCCCGATCCCCCTCTACATGCTACCGA
* * **
24933475 TCCCGCTGCCAGTCCTGCTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGTACTAT
130 TCCCGCTACCAGTCCTGCTGCCACAACCCTC-GTCCGGCTGGGGCTTAGACATGGAATGTACTCC
* * * * **
24933540 GTATGCCTAAGCCAACCCATGGAACGAGCGTACGGACGTTCAGCCA-ACCGGAGAGGCAG-ATGC
194 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CAGGTCGGAGAGGCAGAATGC
** ** * *
24933603 ATAAGCCAAGGATTGGCCCAGTCCCTCTTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATTC
258 GCAAGCCGGGGATTGGCCCAGTCCCTCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCC
** * *
24933668 GGTTTGATTTTGGACTGGGAATGAACTCCATATG
323 GGTCCGATTTTAGACTGGGGATGAACTCCATATG
*
24933702 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG
24933766 CCGCCAGAGA
Statistics
Matches: 638, Mismatches: 108, Indels: 58
0.79 0.13 0.07
Matches are distributed among these distances:
342 43 0.07
343 1 0.00
344 6 0.01
345 2 0.00
348 2 0.00
349 31 0.05
350 6 0.01
351 2 0.00
352 1 0.00
353 2 0.00
354 73 0.11
355 77 0.12
356 147 0.23
357 5 0.01
358 1 0.00
359 3 0.00
360 2 0.00
361 17 0.03
362 151 0.24
363 66 0.10
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (356 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGA
GGCAGTCGGAGAGGCATAATGCGCAAGCCGAAGATCAGCCCGATCCCCCTCTACATGCTACCGAT
CCCGCTACCAGTCCTGCTGCCACAACCCTCGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGT
ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCAGGTCGGAGAGGCAGAATGCGCA
AGCCGGGGATTGGCCCAGTCCCTCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGGT
CCGATTTTAGACTGGGGATGAACTCCATATG
Found at i:24934806 original size:26 final size:26
Alignment explanation
Indices: 24934754--24934806 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24934744 CCCATCCGAT
* *
24934754 CTTAGATTGGGAATGAACTCTGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
* *
24934780 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
24934806 C
1 C
24934807 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:24936162 original size:159 final size:158
Alignment explanation
Indices: 24935868--24936370 Score: 401
Period size: 159 Copynumber: 3.2 Consensus size: 158
24935858 GCTCCGTATG
* *
24935868 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * ** * * * *
24935933 CGGTCGGAGAGGCAGAATGCGCAAGCAGGGGATCGACCCGGTTTCCCCCTGCGGGCAGTCAATCT
66 AGGCCAAAGAGGCAGAATGCGCAAGCAGAGGATCAACCCGG-TTCCCCCTGCGGGCAGCCAATCC
*
24935998 TGCTACCGTAACCCTCGGTCTGATCTGAT
130 CGCTACCGTAACCCTCGGTCTGATCTGAT
* * * *
24936027 CTTAGAC-TGGGAATGGACTCTGTATGCATAAGTCAACCCACGAAACGAACGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
* * * * **
24936091 CAGGCCAAAGAGGCATAATGCGCAAGCCGAGGATCAACCCGG-TCCCCCTATGCGTGCTGCCCGT
65 CAGGCCAAAGAGGCAGAATGCGCAAGCAGAGGATCAACCCGGTTCCCCC--TGCGGGCAGCCAAT
** * * *
24936155 CCCGCTACCACAATCCTCGGTCCGA-CTGGGGT
128 CCCGCTACCGTAACCCTCGGTCTGATCT--GAT
* * * * * * * *
24936187 -TTAGACCTAGAATGAGCTACC-TATGCCTAAGCCAACCCACGAAATGGACGTGCGGGTGCTTAG
1 CTTAGACATGGAATGAACT-CCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
* ** * * * ** * *
24936250 CCA-GTCGGAGAGGCAGAATGCACAAGTCAG-GGATCAGCCCAGACCCCCCTGCGCGCTGCCAAT
65 -CAGGCCAAAGAGGCAGAATGCGCAAG-CAGAGGATCAACCCGGTTCCCCCTGCGGGCAGCCAAT
* * * * * * *
24936313 CCTGCTGCTGCAACCCTCGATCCGATCCGAT
128 CCCGCTACCGTAACCCTCGGTCTGATCTGAT
24936344 CTTAGAC-TGAGAATGAACTCCGTATGC
1 CTTAGACATG-GAATGAACTCCGTATGC
24936371 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 58, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
157 11 0.04
158 52 0.19
159 196 0.72
160 13 0.05
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGC
AGGCCAAAGAGGCAGAATGCGCAAGCAGAGGATCAACCCGGTTCCCCCTGCGGGCAGCCAATCCC
GCTACCGTAACCCTCGGTCTGATCTGAT
Found at i:24936373 original size:26 final size:26
Alignment explanation
Indices: 24936344--24936396 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24936334 CCGATCCGAT
**
24936344 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAACAAACTCCGTATG
* *
24936370 CTTAGACTGGGGACAAACTCCGTATG
1 CTTAGACTGAGAACAAACTCCGTATG
24936396 C
1 C
24936397 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAACAAACTCCGTATG
Found at i:24936683 original size:355 final size:355
Alignment explanation
Indices: 24936027--24938280 Score: 2053
Period size: 355 Copynumber: 6.3 Consensus size: 355
24936017 CTGATCTGAT
* * * * * * *
24936027 CTTAGACTGGGAATGGACTCTGTATGCATAAGTCAACCCACGAAACGAACGTGCGGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCTCTCAGC
* ** * * * *
24936092 AGG-CCAAAGAGGCATAATGCGCAAGCCGAGGATCAACCCGGTCCCCCTATGCGTGCT---G--C
66 CGGTCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATC
* * * * *
24936151 CCG-T--C---CC-GCTACCACAATCCTCGGTCCGACTGGGGTTTAGACCTAGAATG-AGCTACC
131 CCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTA-CT-CC
* ** * *
24936208 -TATGCCTAAGCCAACCCACGAAATG-GACGTGCGGGTGCTTAGCCAGTCGGAGAGGCAGAATGC
194 GTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCACTCAGCGA-TCGGAGAGGCAGAATGC
* * * * * * * *
24936271 ACAAGTCAGGGATCAGCCCAGACCCCCCTGCGCGCTGCCAATCCTGCTGCTGCAACCCTCGATCC
257 ACAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGATCC
* * *
24936336 GATCCGATCTTAGACTGAGAATGAACTCCGTATG
322 GATCTGATCTTAGACTGGGAATGAACTCCATATG
** * * * *
24936370 CTTAGACTGGGGACAAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGACTCTTAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCTCTCAGC
* * * * *
24936435 CGG-CCGAAAAGGCATAATGTGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTATCGATC
66 CGGTCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATC
* ** *
24936499 CCGCTACCGGTCCTGCTGCCTTAACCCTCGGTCCGACTGGGGCTTAGATGTGGAATGTACTCCGT
131 CCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGT
** * ** *
24936564 ATGCCTAAGCCAACCCACGAAACGAGCGCACGGGCACTCAGTCGATTGGAGAGATAGAATGCGCA
196 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG-CGATCGGAGAGGCAGAATGCACA
* * * **
24936629 AGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCTAAT
260 AGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGATCCGAT
*
24936694 CCGATCTTAGACTGGGAATGAACTCCATATG
325 CTGATCTTAGACTGGGAATGAACTCCATATG
* *
24936725 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCTCTCAGC
* ** * * * *
24936790 TGGT-CGGAGAGGCATAATGCGCAAGTTGGGGTTCAGCCCGGTCCCCCTATGCGTGCTACTGATC
66 CGGTCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATC
* * * * * **
24936854 TCACTGCCAGTCCTGCTGGCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTATGT
131 CCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGT
* * * ** ** * * *
24936919 ATGCCTAAGCGAACCCATGAAACGATCGTGCGGGTGCTCAGCCGGCCGAAGAGGAAGAATGCGCA
196 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG-CGATCGGAGAGGCAGAATGCACA
* * ** * *
24936984 AGCCGGGAATTGGCTCGATCCCCCCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGATCCGAT
260 AGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGATCCGAT
* * *
24937049 CGGATCTTAGACTTGGAATAAACTCCATATG
325 CTGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
24937080 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTGTGGGCGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCTCTC-A-
* * * * * ** * * *
24937145 TGGTCGGAGAGGTCGATCGGAGAGGCATAAAGCGTAAGTCGAGGATCAGCTTGGTCCCCTTCTAC
64 --G-C----CGGTC---CGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGC
* * **
24937210 GTGCTACCGATCCCGCTGCCGATCCTGCTGCCACAACCCTCGGTTCGACTGGGGCTT-GACAAGG
119 GTGCTACCGATCCCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGG
* * * **
24937274 AATGTACTCCGTATGCCTAAGCCAACCCACAAAACGAACGTGCGTGTGCTCAGC-ATGTCGGAGA
184 AATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCGA--TCGGAGA
* * * *
24937338 GGCAGAATGCACAAG-CTGGAGATCTA-CCCGGT-CCCCCTGCATGCTGCCGATCCTACTACCGC
247 GGCAGAATGCACAAGTC-GGGGATC-AGCCCGGTCCCCCCTGCGTGCTACCGATCCTGCTACCGC
* *
24937400 AACCCTCGATCCGATCTGATCTTAGATTGGGAATGAACTCTATATG
310 AACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
24937446 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTACGAAATGAGCTTGTGGGCGTTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC--TC-TC
** * ** * *
24937511 TAGCCGAAAAGGTCGACCGGAGAGGCATAATGCATAAGCTGAAGATCAACCCG-GCCACCCTCTG
63 -AGCC-----GGT---CCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCC-CCCTCTG
** * * *
24937575 CGTGCTGTCAATCCCGCTGCTGGTCCTGCTGCTACAACCCTCGGTCCGACTGGGGCTTAGACGTG
118 CGTGCTACCGATCCCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTG
* * *
24937640 GAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCCACCGATCAGAGA
183 GAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACT-CAGCGATCGGAGA
* **** * * ** *
24937705 GGCAGAATGCATAAGTCGGGGATCAGTTTAGTCCCCCTTGCGTGCTACCGATCCTACTGTCACAA
247 GGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTACCGATCCTGCTACCGCAA
* **
24937770 CCCTCGAT-CTAGTCTGATCTTAGACTGGGAATGAACTCTGTATG
312 CCCTCGATCCGA-TCTGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
24937814 CTTAGACTGGGGATGAACTCCATATGCCTTAAGTCAACCCATGAAACAAGCATACGGG-TGCTCA
1 CTTAGACTGGGGATGAACTCCGTATGCC-TAAGTCAACCCACGAAACGAGCGTGCGGGCT-CTCA
** * * * *
24937878 GCCAGTCAGAGAGGTCGGCTGGAGAGGCATAATATGTAAGTCGGGGATCAGTCCGATCCCTCTCT
64 G-C---C-----GGTC--C-GGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCT
* * * * * * *
24937943 ACGTGCTACCAATCTCGCTGTCAGTCTTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGATGT
117 GCGTGCTACCGATCCCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGT
* * * * *
24938008 GGAATGTACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCACTCAGTCGACCAGAG
182 GGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG-CGATCGGAG
* * * * * * *
24938073 AGGTAGAATGCACAAGCCAGGAATTAGCCTGGTCCCTCCTGCGTGCTACCGATCCTGCTACCGCA
246 AGGCAGAATGCACAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTACCGATCCTGCTACCGCA
* *
24938138 ACCCTCGATCCGGTCTGATCTTAGACTGAGAATGAACTCCATATG
311 ACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATG
* * * *
24938183 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGCCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCTCTCAGC
* **
24938248 C-G-CCAGAGAGGCAGGATGCGCAAGCCGGGGATC
66 CGGTCCGGAGAGGCATAATGCGCAAGCCGGGGATC
24938281 GAACGAGTGG
Statistics
Matches: 1559, Mismatches: 286, Indels: 121
0.79 0.15 0.06
Matches are distributed among these distances:
343 101 0.06
346 1 0.00
348 4 0.00
349 1 0.00
351 1 0.00
354 26 0.02
355 528 0.34
356 5 0.00
357 1 0.00
358 1 0.00
359 1 0.00
364 4 0.00
365 5 0.00
366 215 0.14
367 159 0.10
368 215 0.14
369 288 0.18
370 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (355 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCTCTCAGC
CGGTCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATC
CCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGT
ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCGATCGGAGAGGCAGAATGCACAA
GTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGATCCGATC
TGATCTTAGACTGGGAATGAACTCCATATG
Found at i:24936735 original size:26 final size:26
Alignment explanation
Indices: 24936699--24936751 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24936689 CTAATCCGAT
24936699 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
24936725 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
24936751 C
1 C
24936752 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24937471 original size:26 final size:26
Alignment explanation
Indices: 24937420--24937472 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24937410 CCGATCTGAT
* *
24937420 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
24937446 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
24937472 C
1 C
24937473 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24937844 original size:27 final size:26
Alignment explanation
Indices: 24937788--24937840 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24937778 CTAGTCTGAT
**
24937788 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
24937814 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
24937840 C
1 C
24937841 CTTAAGTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24938781 original size:26 final size:26
Alignment explanation
Indices: 24938740--24938792 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24938730 CCGGTCCGAT
*
24938740 CTTAGACTGGCAATGAACTTCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
**
24938766 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
24938792 C
1 C
24938793 CTAAGTCACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:24939917 original size:159 final size:160
Alignment explanation
Indices: 24939487--24939918 Score: 455
Period size: 159 Copynumber: 2.7 Consensus size: 160
24939477 AGCTCCGTAT
* * *
24939487 GCTTAGACATGTAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
24939552 CCGGCTGGAGAGGCAGAATG-TGCAAGCCGGGGATCGACCCGATCCCCTC-CTGTGTGCTATCGA
66 CCGACCGGAGAGGCAGAATGCT-CAAGCCGGGGATCGACCCGATCCCCCCTCTGTGTGCGATCGA
*
24939615 TCCTACTACCACAACCCTTGATCCGGTCTGA
130 TCCCACTACCACAACCCTTGATCCGGTCTGA
* * * * * * * * * *
24939646 TCTTAGAC-TGCGAATGAACTTCGTATGCATAAG-TCAAACCACGAAACGAGTGTACGAGCACTG
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCT-AACCCATGAAACGAGCGTGCGGGCGCTC
* * * * *
24939709 AGCCGACCGAAGGGGCATAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCCTCTGTGTGCGATCG
64 AGCCGACCGGAGAGGCAGAATGCTCAAGCCGGGGATCGACCCGATCCCCCCTCTGTGTGCGATCG
* * * * *
24939773 GTCCCGCTGCCACAACCCTTGGTCCGG-CTGGG
129 ATCCCACTACCACAACCCTTGATCCGGTCT-GA
* * * * * *
24939805 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCTAACCCATGAAATGGGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
24939870 CCGACCGGAGAGGCAGAATGCTCAA-CCGGGGATCGACTCGGTCCCCCCT
66 CCGACCGGAGAGGCAGAATGCTCAAGCCGGGGATCGACCCGATCCCCCCT
24939919 ACATGCTGTC
Statistics
Matches: 215, Mismatches: 50, Indels: 16
0.77 0.18 0.06
Matches are distributed among these distances:
158 22 0.10
159 190 0.88
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCTCAAGCCGGGGATCGACCCGATCCCCCCTCTGTGTGCGATCGAT
CCCACTACCACAACCCTTGATCCGGTCTGA
Found at i:24940329 original size:354 final size:352
Alignment explanation
Indices: 24939783--24940469 Score: 824
Period size: 354 Copynumber: 1.9 Consensus size: 352
24939773 GTCCCGCTGC
* * * * * *
24939783 CACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCTAACCCATG
1 CACAACCCTCGATCCGGCTAGGGATTAGACATGGAATGAGCTCCCTATGCCTAAGCCAAACCATG
* * * ** * * *
24939848 AAATGGGCATGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCTCAACCGGGGATCGACTCGGTC
66 AAACGAGCATGCAGGCACTCAACCGACCGAAGAGGCAGAATGCTCAACCGGGGATCGACCCGGTC
* * * *** * *
24939913 CCCCCTACATGCTGTCGATCCTGTTGCTGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATG
131 CCCCCTACATGCTGCCGATCCTGCTACTGCAACCCTAAATCCAGTCTGATCTTAGACTGGGAATG
* * * * *
24939978 AAATCCATATGCTTAGATTGGGGATGAACT-CGTATGCCTAAGTCAACCCATGAAACAAGCGTGC
196 AAATCCATAGGCTTACAATGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGC
* * * * *
24940042 GGGTGCTTAGCCGGTCGAAGAGGCATAATGCGTAAGCCGAGGATC-AGCCCGGTCCCTCTCTGCA
261 GGGCGCTCAG-CGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGGTCCC-CCCTGCA
*
24940106 TGCTGTCGATCTCGCTGCCAGTCCTACTGG
323 TGCTGCCGATCTCGCTGCCAGTCCTACTGG
*
24940136 CACAACCCTCGATCCGGCTAGGGATTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAAACCAT
1 CACAACCCTCGATCCGGCTAGGGATTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAAACCAT
* * * * * *
24940200 GAAACGAGCGTGCAGGCACTCAACCGATCGAAGAGGTAGAATG-TGCAAGCTGGGGATCGGCCCT
65 GAAACGAGCATGCAGGCACTCAACCGACCGAAGAGGCAGAATGCT-CAA-CCGGGGATCGACCCG
* * * *
24940264 GTCCCCCCTGCGTGCTGCCGATCCTGCTACTGCAACCTTAAATCCAGTCTGATCTTAGGCTGGGA
128 GTCCCCCCTACATGCTGCCGATCCTGCTACTGCAACCCTAAATCCAGTCTGATCTTAGACTGGGA
* * **
24940329 ATGAACTCCGTAGGCTTACAATGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCG
193 ATGAAATCCATAGGCTTACAATGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCG
* * * *
24940394 TGCGGGCGCTCAGTGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCA
258 TGCGGGCGCTCAGCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCA
24940459 TGCTGCCGATC
323 TGCTGCCGATC
24940470 CTGCTACCGC
Statistics
Matches: 277, Mismatches: 52, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
352 1 0.00
353 107 0.39
354 130 0.47
355 39 0.14
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (352 bp):
CACAACCCTCGATCCGGCTAGGGATTAGACATGGAATGAGCTCCCTATGCCTAAGCCAAACCATG
AAACGAGCATGCAGGCACTCAACCGACCGAAGAGGCAGAATGCTCAACCGGGGATCGACCCGGTC
CCCCCTACATGCTGCCGATCCTGCTACTGCAACCCTAAATCCAGTCTGATCTTAGACTGGGAATG
AAATCCATAGGCTTACAATGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCGTGC
GGGCGCTCAGCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCATGC
TGCCGATCTCGCTGCCAGTCCTACTGG
Found at i:24940499 original size:183 final size:181
Alignment explanation
Indices: 24940166--24940625 Score: 557
Period size: 183 Copynumber: 2.5 Consensus size: 181
24940156 GGGATTAGAC
* * * * * *
24940166 ATGGA-ATGTACTCCGTATGCCTAAGCCAAACCATGAAACGAGCGTGCAGGCACTCAACCGATCG
1 ATGGAGATGAACTCCGTATGCCTAAGTCAACCCA-GAAACGAGCGTGCGGGCGCTC-AGCGATCG
* * * * * *
24940230 AAGAGGTAGAATGTGCAAGCTGGGGATCGGCCCTGTCCCCCCTGCGTGCTGCCGATCCTGCTACT
64 GAGAGGTAGAATGCGCAAGC-GGGGATCGACCCGGTCCCCCCTGCATGCTGCCGATCCTGCTACC
*
24940295 GCAACCTTAAATCCAGTCTGATCTTAGGCTGGGAATGAACTCCGTAGGCTTACA
128 GCAACCTTAAATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAGGCTTACA
* * * * *
24940349 ATGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTGGTCGG
1 ATGGAGATGAACTCCGTATGCCTAAGTCAACCCA-GAAACGAGCGTGCGGGCGCTCAGCGATCGG
*
24940414 AGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCATGCTGCCGATCCTGCTACCG
65 AGAGGTAGAATGCGCAAG-CGGGGATCGACCCGGTCCCCCCTGCATGCTGCCGATCCTGCTACCG
* ** * *
24940479 CAACCCTT-GATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
129 CAA-CCTTAAATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAGGCTTACA
* * * *
24940532 CTGGAGATGAACTCCGTATGCCTAAGTCAACCCTA-AAACGAGTGTGCGGGCGCTCAGCCGACCA
1 ATGGAGATGAACTCCGTATGCCTAAGTCAACCC-AGAAACGAGCGTGCGGGCGCTCAG-CGATCG
*
24940596 GAGAGGTAGGATGCGCAAGCCGGGGATCGA
64 GAGAGGTAGAATGCGCAAG-CGGGGATCGA
24940626 ACGGGTGGTA
Statistics
Matches: 235, Mismatches: 37, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
182 20 0.09
183 167 0.71
184 48 0.20
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.20
Consensus pattern (181 bp):
ATGGAGATGAACTCCGTATGCCTAAGTCAACCCAGAAACGAGCGTGCGGGCGCTCAGCGATCGGA
GAGGTAGAATGCGCAAGCGGGGATCGACCCGGTCCCCCCTGCATGCTGCCGATCCTGCTACCGCA
ACCTTAAATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTAGGCTTACA
Found at i:24940541 original size:26 final size:26
Alignment explanation
Indices: 24940500--24940552 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24940490 CTGGTCTGAT
24940500 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24940526 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
24940552 C
1 C
24940553 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24941594 original size:159 final size:159
Alignment explanation
Indices: 24941320--24941614 Score: 362
Period size: 159 Copynumber: 1.9 Consensus size: 159
24941310 GATCCTGCTA
* ** *
24941320 CCACAAACCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCAC
1 CCACAAACCTTGGTCCGGTCTGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCAC
* * ** *
24941385 GAAACGAGCGTGCGGGCACTGAACCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGA
66 AAAACGAGCGTGCGGGCACTCAACCAATCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGA
24941450 TCCCCCTTTGCATGCTGTCGGTCCCGTTG
131 TCCCCCTTTGCATGCTGTCGGTCCCGTTG
* * * *
24941479 CCACAACCCTTGGTCCGG-CTGGGGCTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCC
1 CCACAAACCTTGGTCCGGTCT-GAGCTTAGAC-TGGGAATGAACTCCCTATGCATAAGCCAACCC
* * * * * *
24941542 ACAAAACGGGCGTGCGGGCGCTCAACCAATC-AGAGAGGCAGAATGCGTAAGCCGGGGATTGGCT
64 ACAAAACGAGCGTGCGGGCACTCAACCAATCGA-AGAGGCAGAATGCGCAAGCCAGGGATCGGCC
*
24941606 CGGTCCCCC
128 CGATCCCCC
24941615 CTGCGTGCTA
Statistics
Matches: 113, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
158 3 0.03
159 109 0.96
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
CCACAAACCTTGGTCCGGTCTGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCAC
AAAACGAGCGTGCGGGCACTCAACCAATCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGA
TCCCCCTTTGCATGCTGTCGGTCCCGTTG
Found at i:24941702 original size:26 final size:26
Alignment explanation
Indices: 24941664--24941713 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
24941654 GTCCGTTCTC
*
24941664 AGACTGGGAATGAACTTCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
24941690 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
24941714 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:24942775 original size:26 final size:26
Alignment explanation
Indices: 24942737--24942789 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24942727 GGATAAAAAT
*
24942737 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24942763 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
24942789 C
1 C
24942790 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24943248 original size:26 final size:26
Alignment explanation
Indices: 24943219--24943271 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24943209 CCGATCCGAT
24943219 CTTAGACCAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
** *
24943245 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
24943271 C
1 C
24943272 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCGTATG
Found at i:24943968 original size:26 final size:26
Alignment explanation
Indices: 24943939--24943991 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
24943929 GGCTCAAACT
* *
24943939 CTTAGAC-TAGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
24943965 CTTATACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
24943991 C
1 C
24943992 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:24944259 original size:155 final size:153
Alignment explanation
Indices: 24943964--24944266 Score: 331
Period size: 155 Copynumber: 2.0 Consensus size: 153
24943954 AGCTCCGTAT
* * *
24943964 GCTTATACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAACGAGTGTGCGGGCGCTCAGC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAACGAGCGTACGGGCGCTCAGC
* * * * *
24944029 CGGCCGGAGAGGTAGAATGCGCAAGACGGTGATCGACCCGGACACCACCTGCATGCTATCGATCC
66 CGGCCAGAGAGGCAGAATGCACAAGACGGGGAT--ACCCGGACACCACCTACATGCTATCGATCC
*
24944094 TGCCATAACCCTCGGTCCAACTGGG
129 TGCCACAACCCTCGGTCCAACTGGG
* * * * * *
24944119 GCTTAGACATGGAATGAGCTCCTTATGCTTAAGCCAACCCACGAAACGGGCGTATGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCAC-AAACGAGCGTACGGGCGCTCAG
* * * * * * *
24944184 CCGGTCAGAGAGGCAGAATGCACAAGCCGGGGAT-CTCGGTC-CCCCCTACGTGCTGTCGATCCT
65 CCGGCCAGAGAGGCAGAATGCACAAGACGGGGATACCCGGACACCACCTACATGCTATCGATCCT
*
24944247 GCGGTCGCAACCCTCGGTCC
130 GC---CACAACCCTCGGTCC
24944267 GGTCTGATCT
Statistics
Matches: 121, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
152 20 0.17
153 5 0.04
155 51 0.42
156 45 0.37
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (153 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAACGAGCGTACGGGCGCTCAGC
CGGCCAGAGAGGCAGAATGCACAAGACGGGGATACCCGGACACCACCTACATGCTATCGATCCTG
CCACAACCCTCGGTCCAACTGGG
Found at i:24944304 original size:26 final size:26
Alignment explanation
Indices: 24944275--24944327 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24944265 CCGGTCTGAT
*
24944275 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24944301 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24944327 C
1 C
24944328 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24944802 original size:26 final size:26
Alignment explanation
Indices: 24944763--24944813 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
24944753 GGTCTAATCC
*
24944763 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
24944789 TAGACTAGGG-ATGAACTCCGTATGC
1 TAGACT-GGGAATGAACTCCGTATGC
24944814 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:24945145 original size:26 final size:25
Alignment explanation
Indices: 24945116--24945194 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
24945106 CCGATCTGAT
24945116 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTG-GAATGAACTCCGTATG
24945142 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
*
24945168 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
24945194 C
1 C
24945195 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 49 0.98
27 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:24945867 original size:26 final size:26
Alignment explanation
Indices: 24945838--24945890 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24945828 GGCTCAAAAT
*
24945838 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
24945864 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
24945890 C
1 C
24945891 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:24946257 original size:159 final size:158
Alignment explanation
Indices: 24945863--24946308 Score: 450
Period size: 159 Copynumber: 2.8 Consensus size: 158
24945853 AGCTCCGTAT
* * *
24945863 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
24945928 CCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTATGTGCTGTCGATCC
66 TCGGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGCCGATCC
** * *
24945993 TACTGCCGTAACCCTCGATCTGGTCTGA
131 TACTGCCACAACCCTCGATCTCGACTGA
* ** * * * * * *
24946021 TCTTAGAC-TAGGAATGAACTTTGTATGCATAAG-TCAACGCACGAAAAGAGCGTGCAGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * *
24946084 A-TCTAGCCAAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCACCTCTGCGTGCTGCCG
64 AGTC-GGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCC-CCCCTACGTGCTGCCG
* * *
24946148 GTCCTGCTGCCACAACCCTCGATC-CGACTGGG
127 ATCCTACTGCCACAACCCTCGATCTCGACT-GA
* * * *
24946180 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCTAACCCACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** *
24946245 TCGGTCAGAGAGGCAGATTACGCAAGCTTGGGATCGACCCGATCCCCCCTACGTGCTGCCGATC
66 TCGGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGCCGATC
24946309 TTGCTATCAC
Statistics
Matches: 223, Mismatches: 57, Indels: 16
0.75 0.19 0.05
Matches are distributed among these distances:
157 2 0.01
158 103 0.46
159 114 0.51
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGCCGATCC
TACTGCCACAACCCTCGATCTCGACTGA
Found at i:24946689 original size:355 final size:355
Alignment explanation
Indices: 24946178--24946817 Score: 847
Period size: 355 Copynumber: 1.8 Consensus size: 355
24946168 GATCCGACTG
* *
24946178 GGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCTAACCCACGAAACGGGCATGCGGGCGCTC
1 GGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTC
* * * ** *
24946243 AGTCGGTCAGAGAGGCAGATTACGCAAGCTTGGGATCGACCCGATCCCCCCTACGTGCTGCCGAT
66 AGACGGCCAGACAGGCAGATTACGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCCGCCGAT
* * * * * *
24946308 CTTGCTATCACGACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCAGTATGCTTCGACT
131 CCTGCTATCACAACCCTCGATCCGGTCCGATCTTAGACTGGCAATGAACTCAGTATGCTTAGACT
* *
24946373 GGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCTG-CCAG
196 AGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CTGACCAG
*
24946437 AGAGGCATAATGCGCAAGCCGGGGATTAGCCCGGTCCCCCTCTGCGTGCTGTCTATCCCGCTGTC
260 AGAGGCAGAATGCGCAAGCCGGGGATTAGCCCGGTCCCCCTCTGCGTGCTGTCTATCCCGCTGTC
24946502 GATCCTGCTACCACAACACTCAGTTCAGCTT
325 GATCCTGCTACCACAACACTCAGTTCAGCTT
** * **
24946533 GGGCTTAGACATGGAATGTA-CTCTGTATGCGTAAGCCAACCCACGAAACGAGTGTGCGGGCGCT
1 GGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCT
* ** * ** * *
24946597 CA-ACAGGCCAGACAGGCAGATTGCGCAAGCCAGGGATC-AGCTTGGTCCTGCTTACGTGCCGTC
65 CAGAC-GGCCAGACAGGCAGATTACGCAAGCCAGGGATCGA-CCCGATCCCCCCTACGTGCCGCC
* ** * * * *
24946660 GATCCTGCTGTTGCAACCCTCTATCCGGTCTGATCTTAGACTGGCAATGAACTCCGTATGTTTAG
128 GATCCTGCTATCACAACCCTCGATCCGGTCCGATCTTAGACTGGCAATGAACTCAGTATGCTTAG
* **
24946725 ACTAGAGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTTGCTGACC
193 ACTAGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGACC
*
24946790 AGAGAGGCAGGATGCGCAAGCCGGGGAT
258 AGAGAGGCAGAATGCGCAAGCCGGGGAT
24946818 CGAACGAGTG
Statistics
Matches: 240, Mismatches: 41, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
354 5 0.02
355 234 0.98
356 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (355 bp):
GGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTC
AGACGGCCAGACAGGCAGATTACGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCCGCCGAT
CCTGCTATCACAACCCTCGATCCGGTCCGATCTTAGACTGGCAATGAACTCAGTATGCTTAGACT
AGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGACCAGA
GAGGCAGAATGCGCAAGCCGGGGATTAGCCCGGTCCCCCTCTGCGTGCTGTCTATCCCGCTGTCG
ATCCTGCTACCACAACACTCAGTTCAGCTT
Found at i:24947920 original size:26 final size:26
Alignment explanation
Indices: 24947891--24947943 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24947881 CCGATTTGAT
* *
24947891 CTTAGACTAGGAATGAATTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
24947917 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
24947943 C
1 C
24947944 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:24949050 original size:26 final size:26
Alignment explanation
Indices: 24949021--24949073 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24949011 CCGGTCCGAT
24949021 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
24949047 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24949073 C
1 C
24949074 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24950062 original size:159 final size:159
Alignment explanation
Indices: 24949767--24950132 Score: 418
Period size: 159 Copynumber: 2.3 Consensus size: 159
24949757 AGCTCCGTAT
* * *
24949767 GCTTAGACATGGAACGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAG
* * *
24949832 CCGCCCGAAAAGGCAGAATGCGCAAGCTGAGGATCGACCCGGTCCCCCCTTACGTGCTGTCGATC
66 CAGCCCGAAAAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTTACGTGCTGTCGATC
* ** **
24949897 CTGCTGCTGCAACCCTTGGTCCGGTCT-GA
131 CCGCTGCCACAACCCTCAGTCCGG-CTGGA
* * * * * *
24949926 TCTTAGAC-TGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAACGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCA
* * * * *
24949990 GCAAG-CCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCAGT-CCCCCTCTGCGTGCTGTC-
65 GC-AGCCCGAAAAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCT-TACGTGCTGTCG
24950052 AGTCCCGCTGCCACAACCCTCAGTCCGGCTGGA
128 A-TCCCGCTGCCACAACCCTCAGTCCGGCTGGA
* * * *
24950085 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCAATGAAACG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACG
24950133 GGAGAGGCAG
Statistics
Matches: 172, Mismatches: 29, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
158 10 0.06
159 160 0.93
160 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAG
CAGCCCGAAAAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTTACGTGCTGTCGATC
CCGCTGCCACAACCCTCAGTCCGGCTGGA
Found at i:24950245 original size:133 final size:135
Alignment explanation
Indices: 24949999--24950264 Score: 317
Period size: 133 Copynumber: 2.0 Consensus size: 135
24949989 AGCAAGCCGA
* *
24949999 AGAGGCATAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTGTCAGTCCCGCTGCC
1 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGT-CCCCTCTGCGTGCTATCAGTCCCGCTGCC
*
24950064 ACAACCCTCAGTCCGGCTGGAGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCAATGA
65 ACAACCCTCAGTCCGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGA
24950129 AACGGG
130 AACGGG
* * * *
24950135 AGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGT-CCC-CTGCGTGCTATC-GATCCTGCTGTC
1 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCTCTGCGTGCTATCAG-TCCCGCTGCC
** * * ** * * *
24950197 GTAACCCTCAGTCTGGTCT-GATCTTAGAC-TAGGAATGAACTCTGTATGCGTAAGTCAACCCAT
65 ACAACCCTCAGTCCGG-CTGGAGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCAAT
24950260 GAAAC
128 GAAAC
24950265 AAGCGTGCAG
Statistics
Matches: 111, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
132 2 0.02
133 72 0.65
134 5 0.05
136 32 0.29
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (135 bp):
AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCTCTGCGTGCTATCAGTCCCGCTGCCA
CAACCCTCAGTCCGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAATGAA
ACGGG
Found at i:24951727 original size:26 final size:26
Alignment explanation
Indices: 24951687--24951738 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24951677 TAGTTTGATA
24951687 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
24951713 TTAGACTGGGGATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
24951739 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:24952104 original size:26 final size:26
Alignment explanation
Indices: 24952053--24952105 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24952043 CTGGTCTGAT
*
24952053 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
24952079 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
24952105 C
1 C
24952106 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24952155 original size:367 final size:361
Alignment explanation
Indices: 24951151--24952142 Score: 1159
Period size: 354 Copynumber: 2.7 Consensus size: 361
24951141 GGTCCCGTTG
* * * * *
24951151 CCACAA-CCTCAGTCCGGCTAGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCAAACCCA
1 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTA-CTCCATATGCCTAAGCCAACCCA
* * * * *
24951214 TGAAACGAGTGTACGGACGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCG
65 TGAAACGAGTGTACGGGCGCTCAG-CAACGA-AGAGGCAGAATGCGCAAGTCGGGGATCAGCCCG
** * * ** *
24951279 GTCCCCCCTGCGTAATATCGATCCTGCTGCCGCAACTCTCGGGCCGGTCTGATCTTAGACTGGGA
128 GT-CCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGA
**
24951344 AACAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCG
192 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCG
* *
24951409 TGTGGG---CA-C-TC----A-GCCGGTCGGAGAGGCATATTATGCAAGCCAGGGATCAGCTCGG
257 TGCGGGCCTCAGCGTCAGAGAGGCCGGTCGGAGAGGCATAATATGCAAGCCAGGGATCAGCTCGG
* * *
24951464 TCCCCTTAATGTGCTGCCGATCCCGTTGCCGGTCCTACTG
322 TCCCCTTAATGTGCTGCCGATCCCCTAGCCGGTCCTACTA
* *
24951504 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATAGAATGTACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCCAT
* * * * * * * *
24951569 GAAACGAGCGTGCGGGCGCTCAACCGACTGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCTCGG
66 GAAACGAGTGTACGGGCGCTC-AGCAAC-GAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGG
* * * * * * * *
24951634 TCCCCCTTGTGTGCTGCCAATCCTACTGTCGCAACCCTCGATCTAGTTTGATATTAGACTGGGAA
129 TCCCCC-TGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAA
**
24951699 TGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCTTGAAACGAGCGT
193 TGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * *
24951764 ACGGGCGCTCAGCTGGTCAGAGAGGCCGGTCGGAGAGGCATAATGTGCAAGTCGGGGATCAGC-C
258 GCGGGC-CTCAGC--GTCAGAGAGGCCGGTCGGAGAGGCATAATATGCAAGCCAGGGATCAGCTC
** *
24951828 TGGTCCCCCTTTGTGTGCTGTCGATCCCACTAG-CGGTCCTACTA
320 -GGT-CCCCTTAATGTGCTGCCGATCCC-CTAGCCGGTCCTACTA
* * * * *
24951872 CCATAACCCTCGGTTC-GACTGGGGCTTAGACGTGGAATGTACTTCATATGCCAAAGCCAACCCA
1 CCACAACCCTCGGTCCAG-CTGGGGCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCCA
24951936 TGAAACGAGTGTACGGGCGCTCAGTCAATCGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCG
65 TGAAACGAGTGTACGGGCGCTCAG-CAA-CGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCG
* * * *
24952001 GTCCCCCTACGTGCTGTCGATCTTGCTACCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAA
128 GTCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAA
** *
24952066 TGAACTCTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
193 TGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGT
24952131 GCGGGCTCTCAG
258 GCGGGC-CTCAG
24952143 TCGACCAGAG
Statistics
Matches: 531, Mismatches: 84, Indels: 34
0.82 0.13 0.05
Matches are distributed among these distances:
353 11 0.02
354 207 0.39
355 2 0.00
358 2 0.00
359 1 0.00
362 2 0.00
366 2 0.00
367 156 0.29
368 145 0.27
369 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (361 bp):
CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCCAT
GAAACGAGTGTACGGGCGCTCAGCAACGAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGGTC
CCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGA
ACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
GGCCTCAGCGTCAGAGAGGCCGGTCGGAGAGGCATAATATGCAAGCCAGGGATCAGCTCGGTCCC
CTTAATGTGCTGCCGATCCCCTAGCCGGTCCTACTA
Found at i:24952748 original size:26 final size:26
Alignment explanation
Indices: 24952710--24952762 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24952700 GGCTAAAACT
* *
24952710 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
24952736 CTTAGACAT-GGAATGAACTACGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
24952762 C
1 C
24952763 CGAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:24953151 original size:159 final size:159
Alignment explanation
Indices: 24952735--24953230 Score: 413
Period size: 158 Copynumber: 3.1 Consensus size: 159
24952725 AGCTCCGTAT
* * *
24952735 GCTTAGACATGGAATGAACTACGTATGCCGAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * ** * *
24952800 CCAG-TCGGAGAGGTAGAATGCACAA-TCCGAGGATCGACCCGATG-CCCCT-TTTGTGCTATTG
66 -CAGCTCGGAGAGGCAGAATGCATAAGT-CGAGGATCGACCTGA-GCCCCCTCTACGTGCTGTCG
* ** *
24952861 ATCATGCTGCCGTAACCCTCGATCCGATCCGA
128 ATCCTGCTGCCACAACCCTCGATCCGATCAGA
* * * * * * * * *
24952893 TCTTAGAC-TGGGAATGAACTCTGAATGCATAAGTCAACTCACGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * *
24952957 GCTGAC-CGAAGAGGCATAATGC-TCAAGGC-AGGGATCGACCTGA-CCCCCATCTACGTGCTGT
65 GCAG-CTCGGAGAGGCAGAATGCAT-AAGTCGA-GGATCGACCTGAGCCCCC-TCTACGTGCTGT
* * * * *
24953018 CGGTCCTGCTGCCACAACCCTCGGTCCGGTTAGG
126 CGATCCTGCTGCCACAACCCTCGATCCGATCAGA
* * * *
24953052 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATAAAACGAGAGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
24953117 TC-GCTCGGAGAGGCAGAATGCATAAGTCGAGGATCG-GCTCAGTCCCCTCTACGTGCTGCCGAT
66 -CAGCTCGGAGAGGCAGAATGCATAAGTCGAGGATCGACCTGAGCCCCCTCTACGTGCTGTCGAT
* * * *
24953180 CCTGCTGCCACAACCCTTGGTTCGATCTGA
130 CCTGCTGCCACAACCCTCGATCCGATCAGA
*
24953210 TCTTAGAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
24953231 TGTAAGCTTA
Statistics
Matches: 261, Mismatches: 61, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
157 9 0.03
158 138 0.53
159 110 0.42
160 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CAGCTCGGAGAGGCAGAATGCATAAGTCGAGGATCGACCTGAGCCCCCTCTACGTGCTGTCGATC
CTGCTGCCACAACCCTCGATCCGATCAGA
Found at i:24953604 original size:26 final size:26
Alignment explanation
Indices: 24953568--24953620 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24953558 TTGGTCCGAT
24953568 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
24953594 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
24953620 C
1 C
24953621 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24954328 original size:26 final size:26
Alignment explanation
Indices: 24954290--24954342 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24954280 GGCTCAAAAT
**
24954290 CTTAGACTGGGAATGAGA-TCCGTATG
1 CTTAGACACGGAATGA-ACTCCGTATG
24954316 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
24954342 C
1 C
24954343 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:24954661 original size:26 final size:26
Alignment explanation
Indices: 24954632--24954684 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24954622 CCACTCTGAT
24954632 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
24954658 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
24954684 C
1 C
24954685 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:24955028 original size:26 final size:26
Alignment explanation
Indices: 24954999--24955051 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24954989 CTGATCTAAT
24954999 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
24955025 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
24955051 C
1 C
24955052 CTAAGTCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:24956091 original size:159 final size:158
Alignment explanation
Indices: 24955758--24956262 Score: 422
Period size: 159 Copynumber: 3.2 Consensus size: 158
24955748 TGCTCTGTAT
* * *
24955758 GCTTAGACATGGAATGAACTCCGTATGCCA-AAGCCAACCCACGAAAACAAGCGTCCGGGCACTC
1 GCTTAGACATGGAATGAACTCCGTATG-CATAAG-CAACCCACG-AAACGAGCGTACGGGCGCTC
* * * *
24955822 AGCTGGCTGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATGCACCCCTGCGTGCTGTAGA
63 AGCTGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATGCACCCCTGCGTGCTGTAGA
* * * * *
24955887 TCCTGCTACTGCAATCCTTGGTCTGGTCCGA
128 TCCTGCTACAGCAACCCTCGGTCCGCTCCGA
* * * *
24955918 TCTTAAAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAG-CAACCCACGAAACGAGCGTACGGGCGCTCA
* *
24955982 GCTGACCGAAGAGGCATAATGCGCAAG-CTGAGGATCGACCCGAT-C-CCCCTTTGCGTGCTGTC
64 GCTGACCGAAGAGGCAGAATGCGCAAGTC-GAGGATCGACCCGATGCACCCC--TGCGTGCTGTA
* * * *
24956044 GGTCTTGCTACCAG-AACCCTCGGTCCGACT-GGG
126 GATCCTGCTA-CAGCAACCCTCGGTCCG-CTCCGA
* * * * * * *
24956077 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCTAACCCATGAAACGGGTGTGCGGGCGCTCA-
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGC-AACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * * *
24956141 ATCGGCCGGAGAGGCAGAATGCGCAAGTC-AGAGATCGGCCC-A-GCCCCCCCTACGTGCTATCG
65 CT-GACCGAAGAGGCAGAATGCGCAAGTCGAG-GATCGACCCGATG-CACCCCTGCGTGCTGTAG
* * *
24956203 ATCCTGCTACCGCAACCCTTGGTCCGATCCGA
127 ATCCTGCTACAGCAACCCTCGGTCCGCTCCGA
*
24956235 TCTTAGAC-TGAGAATGAACTCCGTATGC
1 GCTTAGACATG-GAATGAACTCCGTATGC
24956263 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 51, Indels: 38
0.76 0.14 0.10
Matches are distributed among these distances:
157 9 0.03
158 59 0.21
159 165 0.60
160 43 0.16
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCAACCCACGAAACGAGCGTACGGGCGCTCAGC
TGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATGCACCCCTGCGTGCTGTAGATCC
TGCTACAGCAACCCTCGGTCCGCTCCGA
Found at i:24956265 original size:26 final size:26
Alignment explanation
Indices: 24956236--24956288 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24956226 CCGATCCGAT
24956236 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* * *
24956262 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
24956288 C
1 C
24956289 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:24956644 original size:26 final size:26
Alignment explanation
Indices: 24956605--24956658 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
24956595 GGTCTGATCT
24956605 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
* * *
24956631 TAGATTGGGGATGAACTTCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
24956657 TA
1 TA
24956659 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:24957637 original size:26 final size:26
Alignment explanation
Indices: 24957608--24957660 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24957598 CCGATCTGAT
24957608 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
24957634 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
24957660 C
1 C
24957661 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:24959190 original size:26 final size:26
Alignment explanation
Indices: 24959161--24959213 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24959151 GGCTCAAAAT
*
24959161 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
24959187 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
24959213 C
1 C
24959214 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:24960025 original size:26 final size:26
Alignment explanation
Indices: 24959989--24960041 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24959979 CCGATTCGAT
24959989 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
24960015 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
24960041 C
1 C
24960042 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:24960739 original size:26 final size:26
Alignment explanation
Indices: 24960710--24960762 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24960700 GGCTCAAAAT
*
24960710 CTTAGAC-TGGCAATGAGCTCCGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
*
24960736 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
24960762 C
1 C
24960763 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:24961035 original size:158 final size:156
Alignment explanation
Indices: 24960736--24961272 Score: 467
Period size: 158 Copynumber: 3.4 Consensus size: 156
24960726 GCTCCGTATG
* *
24960736 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAAC-TCTTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * * *
24960801 CTACCGGAGAGGTAAAATGGGCAAGCCGAGGAAT-GACCCGAT-CCCCTCCTGCGTGCTGTCA-G
65 CAACC-AAGAGGCAAAATGCGCAAGCCG-GGGATCGACTCGGTCCCCCT-CTGCGTGCTG-CAGG
* * *
24960863 TACTGCTGCCACAACCCTCGGTCTGATCCGAT
126 T-CCGCTGCCACAACCCTCAGTCTGGTCCGAT
* * * * * ** *
24960895 CTTAGACTTGGAATGAACTCTTATGCATAAGTCAACCCACGAAATGAGCATGTGGGCATTGAGCC
1 CTTAGACATGGAATGAACTCTTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCC
* *
24960960 GACCTAAGAGGCATAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTGCAGGTCCG
66 AACC-AAGAGGCAAAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTGCAGGTCCG
* * * ** *
24961025 ACTACTACAACCCTCAGTCCGGTTGGAG
130 -CTGCCACAACCCTCAGTCTGGTCCGAT
* * * * * * *
24961053 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATG-AACGGGCGTCCGGGTGCTCAG-
1 CTTAGACATGGAATGAACT-CTTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * *
24961116 CAAGCCAGAGAGGCAAAATGCGCAAGCTGGGGATCGACTTGGTCCCCC-CTACTTGCTGCCGATC
65 CAA-CCA-AGAGGCAAAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTGCAGGTC
* * *
24961180 CTGTTGCCGCAACCCTCAGTCTGGTCTGAT
128 C-GCTGCCACAACCCTCAGTCTGGTCCGAT
* * * *
24961210 CTTAGAC-TGGGAATGAACTCTTTATGCCTAAGTCAACCCACAAAACGAGCATACGGACGCTCA
1 CTTAGACAT-GGAATGAACTC-TTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
24961273 TCCGGTCGGA
Statistics
Matches: 298, Mismatches: 69, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
156 2 0.01
157 76 0.26
158 180 0.60
159 40 0.13
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCTTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCC
AACCAAGAGGCAAAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTGCAGGTCCGC
TGCCACAACCCTCAGTCTGGTCCGAT
Found at i:24961236 original size:157 final size:158
Alignment explanation
Indices: 24960966--24961249 Score: 360
Period size: 157 Copynumber: 1.8 Consensus size: 158
24960956 AGCCGACCTA
* * * *
24960966 AGAGGCATAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTGCGTGCTGCAGGTCCGACTACT
1 AGAGGCAAAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTACGTGCTGCAGATCCGACTACC
*
24961031 ACAACCCTCAGTCCGGTTGGAGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGA
66 ACAACCCTCAGTCCGGTTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
24961096 ACGGGCGTCCGGGTGCTCAGCAAGCCAG
131 ACGGGCGTCCGGGTGCTCAGCAAGCCAG
* * * * * *
24961124 AGAGGCAAAATGCGCAAGCTGGGGATCGACTTGGTCCCCC-CTACTTGCTGCCGATCCTG-TTGC
1 AGAGGCAAAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTACGTGCTGCAGATCC-GACTAC
* * * ** *
24961187 CGCAACCCTCAGTCTGGTCT-GATCTTAGAC-TGGGAATGAACTCTTTATGCCTAAGTCAACCCA
65 CACAACCCTCAGTCCGGT-TGGAGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCA
24961250 CAAAACGAGC
Statistics
Matches: 106, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
156 1 0.01
157 66 0.62
158 39 0.37
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.21
Consensus pattern (158 bp):
AGAGGCAAAATGCGCAAGCCGGGGATCGACTCGGTCCCCCTCTACGTGCTGCAGATCCGACTACC
ACAACCCTCAGTCCGGTTGGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
ACGGGCGTCCGGGTGCTCAGCAAGCCAG
Found at i:24962821 original size:26 final size:26
Alignment explanation
Indices: 24962785--24962837 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24962775 TTGATCTGAT
*
24962785 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
* *
24962811 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
24962837 C
1 C
24962838 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:24963123 original size:354 final size:352
Alignment explanation
Indices: 24962605--24963292 Score: 963
Period size: 354 Copynumber: 1.9 Consensus size: 352
24962595 GTCTCGCTGC
* * *
24962605 CACAACCCTCGGTCTAGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATG
1 CACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACG
* * * *
24962670 AAACTGGCGTACGAGCGCTCAACCGGCCGGAGAGGCAGAATGCTCAGCCGGGGATCGACCCGATC
66 AAACTGGCGTACGAGCGCTCAACCGACCGAAGAGGCAGAATGCGCAACCGGGGATCGACCCGATC
* * * * *
24962735 CCCTCTACGTGCTGTCGATCCTATTGCTGCAACCCTCGGT-TTGATCTGATCTTAGACTGGGAAT
131 CCCTCTACGTGCTGTCGATCCTATTGCCGCAACCCTCGATCCTG-TCCGATCTTAGACTGAGAAT
* ** *
24962799 GAACTCCATATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTA
195 GAACTCCATAGGCTTAGAATGGGGATGAACTCAATATGCCTAAGTCAACCCACGAAACGAGCGTA
* * *
24962864 CGGGCGCTCAGTCGGGCGGAGAGGCATAATGCGTAAGCCAGGGATC-AGCCCG-GTCCCTCTCTG
260 CGGGCGCTCAG-CGGGCGGAGAGGCAGAATGCGCAAGCCAGGGATCGA-CCCGAG--CCTCCCTG
24962927 CATGCTGTCGATCCCGCTGCTGGTCCTACTAT
321 CATGCTGTCGATCCCGCTGCTGGTCCTACTAT
* * *
24962959 CACAACCCTCGGTCCGGCTAGGGTTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCAC
1 CACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCAC
* * * * *
24963023 GAAAC-GAGCGTGCGGGCGCTCAGCCGACCGAATAGGCAGAATGCGCAACCGGGGATCGGCCCGA
65 GAAACTG-GCGTACGAGCGCTCAACCGACCGAAGAGGCAGAATGCGCAACCGGGGATCGACCCGA
* *
24963087 TCCCCTCTGCGTGCTGTCGATCCTGTTGCCGCAACCCTCGATCCTGTCCGATCTTAGACTGAGAA
129 TCCCCTCTACGTGCTGTCGATCCTATTGCCGCAACCCTCGATCCTGTCCGATCTTAGACTGAGAA
* *
24963152 TGAACTCCGTAGGCTTAGAATGGGGATGAACTCAATATGCCTAAGTCAACCCACGAAATGAGCGT
194 TGAACTCCATAGGCTTAGAATGGGGATGAACTCAATATGCCTAAGTCAACCCACGAAACGAGCGT
* * * *
24963217 ACGGGCGCTCAGCGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGAGCCTCCCTGCAT
259 ACGGGCGCTCAGCGGGCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGAGCCTCCCTGCAT
24963282 GCTGTCGATCC
324 GCTGTCGATCC
24963293 TGCTACCGCA
Statistics
Matches: 294, Mismatches: 35, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
352 21 0.07
353 33 0.11
354 237 0.81
355 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (352 bp):
CACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACG
AAACTGGCGTACGAGCGCTCAACCGACCGAAGAGGCAGAATGCGCAACCGGGGATCGACCCGATC
CCCTCTACGTGCTGTCGATCCTATTGCCGCAACCCTCGATCCTGTCCGATCTTAGACTGAGAATG
AACTCCATAGGCTTAGAATGGGGATGAACTCAATATGCCTAAGTCAACCCACGAAACGAGCGTAC
GGGCGCTCAGCGGGCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGAGCCTCCCTGCATGC
TGTCGATCCCGCTGCTGGTCCTACTAT
Found at i:24963325 original size:183 final size:184
Alignment explanation
Indices: 24963004--24963448 Score: 585
Period size: 183 Copynumber: 2.4 Consensus size: 184
24962994 ATGTACTCCG
* * * *
24963004 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAATAGGCAGAATGCGC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGC
* * * * *
24963069 AA-CCGGGGATCGGCCCGATCCCCTCTGCGTGCTGTCGATCCTGTTGCCGCAACCCTCGATCCTG
66 AAGCCGGGGATCGACCCGAGCCCCTCTGCATGCTGTCGATCCTGCTACCGCAACCCTCGATCCTG
* *
24963133 TCCGATCTTAGACT-GAGAATGAACTCCGTAGGCTTAGAATGGGGATGAACTCAA
131 TCCGATCTTAGACTAG-GAATGAACTCCGTAGGCTTAGAATAGAGATGAACTCAA
* * **
24963187 TATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAG-CGGTCGGAGAGGTAGAATGCGC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGC
* *
24963251 AAGTCGGGGATCGACCCGAGCCTCC-CTGCATGCTGTCGATCCTGCTACCGCAACCCTTGAT-CT
66 AAGCCGGGGATCGACCCGAGCC-CCTCTGCATGCTGTCGATCCTGCTACCGCAACCCTCGATCCT
* * * **
24963314 AGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGAGATGAACTCCC
130 -GTCCGATCTTAGACTAGGAATGAACTCCGTAGGCTTAGAATAGAGATGAACTCAA
* * * * *
24963370 TATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGCGCTCAGCCGACCAGAGAGGTAGGATGCAC
1 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGC
24963435 AAGCCGGGGATCGA
66 AAGCCGGGGATCGA
24963449 ACGGGTGATA
Statistics
Matches: 225, Mismatches: 32, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
182 21 0.09
183 171 0.76
184 33 0.15
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (184 bp):
TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGC
AAGCCGGGGATCGACCCGAGCCCCTCTGCATGCTGTCGATCCTGCTACCGCAACCCTCGATCCTG
TCCGATCTTAGACTAGGAATGAACTCCGTAGGCTTAGAATAGAGATGAACTCAA
Found at i:24963363 original size:26 final size:26
Alignment explanation
Indices: 24963322--24963374 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24963312 CTAGTCTGAT
*
24963322 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCCTATG
24963348 CTTAGACTA-GAGATGAACTCCCTATG
1 CTTAGACTAGGA-ATGAACTCCCTATG
24963374 C
1 C
24963375 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCCTATG
Found at i:24964337 original size:158 final size:159
Alignment explanation
Indices: 24963993--24964300 Score: 354
Period size: 159 Copynumber: 1.9 Consensus size: 159
24963983 AGCTCCGTAT
** * * * * * *
24963993 GCTTAGACATGGAATGAATTTCGTATGCATAAGTCAATCCATGAAACGAGCGTATGGGCGCTGAG
1 GCTTAGACATGGAATGAGCTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
* *
24964058 CCGGACGAAGAGGCATAATGCGCAAGCTGGAGATCGGCCCGATACCCCTCGGCGTGCTACCGATC
66 CCGGACGAAGAGGCAGAACGCGCAAGCTGGAGATCGGCCCGATACCCCTCGGCGTGCTACCGATC
* *
24964123 CCGCTGCCACAACCCTCGGTCCGGCTGGG
131 CCGCTGCCACAACCCTCGGTCCGGCTCGA
* * * *
24964152 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAGCTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
* * * * * **
24964217 CCGGTCGGAGAGGCAGAACGCGCAAGCT-GAGGATCGGCCTGGT-CCCAC-CTGCGTGCTGTCGA
66 CCGGACGAAGAGGCAGAACGCGCAAGCTGGA-GATCGGCCCGATACCC-CTCGGCGTGCTACCGA
24964279 T-CCGACTGCCACAACCCTCGGT
129 TCCCG-CTGCCACAACCCTCGGT
24964301 TTGGTCCGAT
Statistics
Matches: 125, Mismatches: 21, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
157 3 0.02
158 34 0.27
159 88 0.70
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAGCTCCGTATGCATAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAA
CCGGACGAAGAGGCAGAACGCGCAAGCTGGAGATCGGCCCGATACCCCTCGGCGTGCTACCGATC
CCGCTGCCACAACCCTCGGTCCGGCTCGA
Found at i:24964707 original size:26 final size:26
Alignment explanation
Indices: 24964690--24964754 Score: 121
Period size: 26 Copynumber: 2.5 Consensus size: 26
24964680 TAGACTGGGA
*
24964690 ATGAACTCCGTCTGCTTAGATTAGGG
1 ATGAACTCCGTATGCTTAGATTAGGG
24964716 ATGAACTCCGTATGCTTAGATTAGGG
1 ATGAACTCCGTATGCTTAGATTAGGG
24964742 ATGAACTCCGTAT
1 ATGAACTCCGTAT
24964755 ACCTAAGTGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (26 bp):
ATGAACTCCGTATGCTTAGATTAGGG
Found at i:24965094 original size:26 final size:26
Alignment explanation
Indices: 24965065--24965115 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24965055 GGCTCAAAAT
24965065 CTTAGAC-TGTGAAT-GAGCTCCGTATG
1 CTTAGACATG-GAATGGA-CTCCGTATG
24965091 CTTAGACATGGAATGGACTCCGTAT
1 CTTAGACATGGAATGGACTCCGTAT
24965116 ACCTAAGCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGGACTCCGTATG
Found at i:24965627 original size:158 final size:156
Alignment explanation
Indices: 24965091--24965627 Score: 493
Period size: 158 Copynumber: 3.4 Consensus size: 156
24965081 GCTCCGTATG
* * * *
24965091 CTTAGACATGGAATGGACTCCGTATACCTAAGCCGACCCACGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * ** * * * *
24965156 CGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATAAACCCGATCGCCCCTGCGTGTTGTCGATCCT
66 AGGTC-GAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCCCCCCTGCATGCTGTCGATCCT
* *
24965221 GCTGCCACAACCCTCGGTCTGGTCCGAT
130 GCTGCCACAACCCTCGGGCTGGTTC-AT
* * * * * *
24965249 CTTAGAC-TGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCTGGCGCTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * * * * *
24965313 TGGTCGAGGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACATGCTATCGGTCC
66 AGGTCGA-GAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCCCCC-CTGCATGCTGTCGATCC
*** * * ***
24965378 CATTGCCACAACCCTC-GGTTCGGCTGGG
129 TGCTGCCACAACCCTCGGGCT-GGTTCAT
* * * * * * * *
24965406 CATAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGGAACGGGTGTGCAGGCACTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * *
24965471 AGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCATGCTGCCAATCCT
66 AGGTC-GAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCCCCCCTGCATGCTGTCGATCCT
* *
24965536 GCTGTCGCAACCCTCGGGCTGGTTCATT
130 GCTGCCACAACCCTCGGGCTGGTTCA-T
* * * * * * *
24965564 CTTAGACAGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTACGGGTGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
24965628 TCGATCGATG
Statistics
Matches: 292, Mismatches: 80, Indels: 14
0.76 0.21 0.04
Matches are distributed among these distances:
156 2 0.01
157 115 0.39
158 173 0.59
159 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
AGGTCGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCCCCCCTGCATGCTGTCGATCCTG
CTGCCACAACCCTCGGGCTGGTTCAT
Found at i:24967157 original size:26 final size:26
Alignment explanation
Indices: 24967128--24967180 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24967118 CTGATCCGAT
* *
24967128 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
24967154 CTTAGACTGGGGATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24967180 C
1 C
24967181 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24969647 original size:171 final size:171
Alignment explanation
Indices: 24969331--24969648 Score: 413
Period size: 171 Copynumber: 1.9 Consensus size: 171
24969321 TGCGTGCTGC
* * * * *
24969331 CGGTCCCGCTGCTAGAACCCTTGGTCCAGTTGGGGCTTAGACATGGAAAGAGCTCCCTATCCCTA
1 CGGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATAGAAAGAGCTCCCTATCCCTA
* * * * * * * *
24969396 AGCCAACCCACGAAATGAGGGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGG
66 AACCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCAGG
*
24969461 GATCGACCCGGTCCCCCTCTGCGTGCTGTTAATCCCACTAT
131 GATCAACCCGGTCCCCCTCTGCGTGCTGTTAATCCCACTAT
* * * * *
24969502 CGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATAGAATG-GACTCCGTATGCCT
1 CGGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATAGAAAGAG-CTCCCTATCCCT
* *
24969566 AAACCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGATCGGAGAGGCAGAATGTACAAGCCAG
65 AAACCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCAG
* *
24969631 GGATCAATCTGGTCCCCC
130 GGATCAACCCGGTCCCCC
24969649 CTATGTGCTG
Statistics
Matches: 123, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
170 1 0.01
171 122 0.99
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (171 bp):
CGGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATAGAAAGAGCTCCCTATCCCTA
AACCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCAGG
GATCAACCCGGTCCCCCTCTGCGTGCTGTTAATCCCACTAT
Found at i:24969731 original size:26 final size:26
Alignment explanation
Indices: 24969695--24969747 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24969685 CCGATCCGAT
*
24969695 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24969721 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24969747 C
1 C
24969748 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24970412 original size:12 final size:12
Alignment explanation
Indices: 24970395--24970425 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
24970385 GAGGGATAGG
24970395 GGGCCAATATAA
1 GGGCCAATATAA
24970407 GGGCCAATATAA
1 GGGCCAATATAA
24970419 GGGCCAA
1 GGGCCAA
24970426 GTATCAGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.19, G:0.29, T:0.13
Consensus pattern (12 bp):
GGGCCAATATAA
Found at i:24970914 original size:159 final size:159
Alignment explanation
Indices: 24970624--24971126 Score: 384
Period size: 159 Copynumber: 3.2 Consensus size: 159
24970614 GCTCCATATG
* * *
24970624 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACAGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * ** *
24970689 CGGCTAGAGGGGCAGAACGCGCAAGCCGGGGATCAACCTAGTCCTCCCCTGCATGCTGCCAATCC
66 CGACCAAAAAGGCAGAACGCGCAAGCCGGGGATCAACCTAGTCCTCCCCTGCATGCTACCAATCC
*
24970754 TGTTGCCACAACCCACAATCCGGTCTGAT
131 TGCTGCCACAACCCACAATCCGGTCTGAT
* * * * *
24970783 CTTAGATAGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGT
1 CTTAGACAGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * ** **
24970848 CGACCAAAAAGGCATAATGTGCAAGTCGGGGATCGGCCT-GATCC-CCCTCTGCATGCTACCGGT
66 CGACCAAAAAGGCAGAACGCGCAAGCCGGGGATCAACCTAG-TCCTCCC-CTGCATGCTACCAAT
* ** ** **
24970911 CCTGCTGCCACAACCCTCGGTCC-AACTGGGG
129 CCTGCTGCCACAACCCACAATCCGGTCT-GAT
* * * * * * * **
24970942 CTTAGACATGGAATGAGCTCCCTATTCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAGC
1 CTTAGACAGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
** ** * * * * * * ** *
24971007 CGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGGTCC-CCCCTGCGTGCTGTCGATCC
66 CGACCAAAAAGGCAGAACGCGCAAGCCGGGGATCAACCTAGTCCTCCCCTGCATGCTACCAATCC
* *** * ** * * *
24971071 TACTGTGGCAACCCTCGGTCTGATCCGAT
131 TGCTGCCACAACCCACAATCCGGTCTGAT
*
24971100 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACAGGGAATGAACTCCGTATGC
24971127 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 70, Indels: 11
0.77 0.20 0.03
Matches are distributed among these distances:
158 58 0.22
159 210 0.78
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACAGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGACCAAAAAGGCAGAACGCGCAAGCCGGGGATCAACCTAGTCCTCCCCTGCATGCTACCAATCC
TGCTGCCACAACCCACAATCCGGTCTGAT
Found at i:24971129 original size:26 final size:26
Alignment explanation
Indices: 24971100--24971152 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24971090 CTGATCCGAT
24971100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24971126 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24971152 C
1 C
24971153 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24972249 original size:159 final size:157
Alignment explanation
Indices: 24971847--24972348 Score: 485
Period size: 159 Copynumber: 3.2 Consensus size: 157
24971837 AGCTCTGTAT
* * * * * *
24971847 GCTTAGACATCGAATGAACTTCATATGCCTAAGCCAACCAATGAAACAAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAAC-TCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
24971912 CCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTATGTGCTGTCGATCT
65 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACTCGGTCCCCCCTGTGTGCTGCCGATCC
* *
24971977 TACTACCACAACTCTCAGTCCGGTCTAA
130 TACTACCACAACCCTCGGTCCGGTCTAA
* * * * * *
24972005 TCTTAGAC-TGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAATGAGCGTGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * *
24972069 GCCAGCCGAATAGGCATAATGCGCAAGCCGGGGAT-TAGCTCGATCCCCCTCTGTGTGCTGCCGA
64 GCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA-CTCGGTCCCCC-CTGTGTGCTGCCGA
* ** **
24972133 TCCCACTACCACAACCCTCGGTTTGGT-TGGG
127 TCCTACTACCACAACCCTCGGTCCGGTCT-AA
* *
24972164 GCTTAGACATGGAATGAGCTCGCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGG-AGCTCA
1 GCTTAGACATGGAATGAACTC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCA-CTCA
* * * * *
24972228 GCTGGCCGGAGAGGAAGAATGCGCAAGCTGAGGATCGACTCGGT-CCCCCTGTGTGCTACCAATC
64 GCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACTCGGTCCCCCCTGTGTGCTGCCGATC
* * *
24972292 CTACTACCGCAACCCTCGGTCAGGTCTGA
129 CTACTACCACAACCCTCGGTCCGGTCTAA
* *
24972321 TCTTAGA-TTGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCC-TATGC
24972349 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 59, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
156 2 0.01
157 61 0.22
158 92 0.34
159 115 0.42
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACTCGGTCCCCCCTGTGTGCTGCCGATCCT
ACTACCACAACCCTCGGTCCGGTCTAA
Found at i:24972358 original size:26 final size:26
Alignment explanation
Indices: 24972322--24972374 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24972312 CAGGTCTGAT
*
24972322 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24972348 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24972374 C
1 C
24972375 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24972705 original size:26 final size:26
Alignment explanation
Indices: 24972676--24972728 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24972666 CCGGTCCGAT
*
24972676 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
24972702 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
24972728 C
1 C
24972729 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:24973428 original size:26 final size:26
Alignment explanation
Indices: 24973399--24973451 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24973389 GGCTCAAAAT
*
24973399 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
24973425 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
24973451 C
1 C
24973452 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:24974297 original size:26 final size:26
Alignment explanation
Indices: 24974268--24974320 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24974258 CCTATCCGAT
*
24974268 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
* *
24974294 CTTAGACTGGGGATGAACCCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
24974320 C
1 C
24974321 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCGTATG
Found at i:24975040 original size:26 final size:26
Alignment explanation
Indices: 24975002--24975054 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24974992 GGCTTAAAAT
* *
24975002 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACTGGGAATGAACTCTGCATG
24975028 CTTAGACAT-GGAATGAACTCTGCATG
1 CTTAGAC-TGGGAATGAACTCTGCATG
24975054 C
1 C
24975055 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGCATG
Found at i:24975383 original size:159 final size:158
Alignment explanation
Indices: 24975029--24975402 Score: 380
Period size: 158 Copynumber: 2.4 Consensus size: 158
24975019 CTCTGTATGC
* * * *
24975029 TTAGACATGGAATGAACTCTGC-ATGCCTAAGCCAACCCATGAAACTAGCGTGCGGGCGCTTAGC
1 TTAGACATGGAATGAACTC-CCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATTAGC
* * * * * * *
24975093 CGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGTTGATCCT
65 CGACCGAAGAGGCAGAATGCACAAGCCGGGGAGCGACCCGATCCCCCCTACGTACTGTCGATCCC
** **
24975158 GCTGCTGCAACCCTCAGTCCGGTCTGATC
130 GCTGCCACAACCCTCAGTCCGGTCTGAGA
* * *
24975187 TTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGC-ATTGAG
1 TTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATT-AG
** * ** * * * *
24975250 CCGGTCGAAGAGGCATAATGCACAAGCCGGGGAGCGGTCGGGTCTCCCTCTACGTACTGTCGGTC
64 CCGACCGAAGAGGCAGAATGCACAAGCCGGGGAGCGACCCGATC-CCCCCTACGTACTGTCGATC
*
24975315 CCGCTGCCACAACCCTC-GATCCGG-CTGGGGA
128 CCGCTGCCACAACCCTCAG-TCCGGTCT-GAGA
* * *
24975346 TTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGC
1 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
24975403 CCCCAACCGA
Statistics
Matches: 175, Mismatches: 34, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.02
158 87 0.50
159 84 0.48
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATTAGCC
GACCGAAGAGGCAGAATGCACAAGCCGGGGAGCGACCCGATCCCCCCTACGTACTGTCGATCCCG
CTGCCACAACCCTCAGTCCGGTCTGAGA
Found at i:24975791 original size:183 final size:184
Alignment explanation
Indices: 24975357--24975810 Score: 476
Period size: 183 Copynumber: 2.5 Consensus size: 184
24975347 TAGACATGGA
* * * * * * *
24975357 ATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCCCCCAACCGACCACAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGACCAGAGAGG
* * *
24975422 CAAACTATGC-AAG-TCGAGGATTGGCCCAGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAA
66 CAGA--ATGCGAAGCTCGAGGATCGGCCCAGTCCCCCCTGCATGCTGCCGATCCTGCTGCCGCAA
* * * * * * ** *
24975485 CCCTCGGTTCAGTCTGATCTTAGATGGGGAATTAACTCTGTATGCTTAGACTAGGG
129 CCCTCGATCCAGTCTAATCTTAGATGAGAAATGAACTCCATAGGCTTAGACTAGGG
* * ** * *
24975541 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGTCG-GCTGAGGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGACCAGA-GAG
* * * *
24975605 GCAGAATGCGTAAGCT-GGGGATCGGCCCGGT-CCCCCTGCATGCTGTCGATCCTGCTGCCTCAA
65 GCAGAATGCG-AAGCTCGAGGATCGGCCCAGTCCCCCCTGCATGCTGCCGATCCTGCTGCCGCAA
24975668 CCCTCGATCC-GATAC-AATCTTAGACT-AGAAATGAACTCCATAGGCTTAGACTAGGG
129 CCCTCGATCCAG-T-CTAATCTTAGA-TGAGAAATGAACTCCATAGGCTTAGACTAGGG
* **
24975724 ATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTAGGCGCTCAACCGACCAGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGACCAGAGAGG
*
24975789 CAGGATGCGCAAGC-CGAGGATC
66 CAGAATGCG-AAGCTCGAGGATC
24975811 TAACGGGTGG
Statistics
Matches: 220, Mismatches: 41, Indels: 19
0.79 0.15 0.07
Matches are distributed among these distances:
182 5 0.02
183 142 0.65
184 72 0.33
185 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (184 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGACCAGAGAGG
CAGAATGCGAAGCTCGAGGATCGGCCCAGTCCCCCCTGCATGCTGCCGATCCTGCTGCCGCAACC
CTCGATCCAGTCTAATCTTAGATGAGAAATGAACTCCATAGGCTTAGACTAGGG
Found at i:24976051 original size:11 final size:11
Alignment explanation
Indices: 24976037--24976062 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
24976027 GCTCTCCGGT
24976037 GATGCTCCGAC
1 GATGCTCCGAC
24976048 GATGCTCCGAC
1 GATGCTCCGAC
24976059 GATG
1 GATG
24976063 GTGCCCCAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
GATGCTCCGAC
Found at i:24976637 original size:26 final size:26
Alignment explanation
Indices: 24976608--24976660 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24976598 CCGGTTCGAT
*
24976608 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
24976634 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
24976660 C
1 C
24976661 CTGAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:24977032 original size:27 final size:27
Alignment explanation
Indices: 24976975--24977032 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
24976965 TATACTGGGA
**
24976975 ATGAACTCCGTATGCTTAGACTAAGGC
1 ATGAACTCCGTATGCTTAGACTAAACC
*
24977002 -TGAACTCCGTATGCCTTAGTC-AAACC
1 ATGAACTCCGTATG-CTTAGACTAAACC
24977028 ATGAA
1 ATGAA
24977033 ACAAGAGCGC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
26 16 0.62
27 10 0.38
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (27 bp):
ATGAACTCCGTATGCTTAGACTAAACC
Found at i:24978068 original size:26 final size:26
Alignment explanation
Indices: 24978039--24978088 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
24978029 CCGGTCTGAT
24978039 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
24978065 CTTAGGCTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
24978089 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24978497 original size:26 final size:26
Alignment explanation
Indices: 24978468--24978520 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24978458 GGCTCAAAAT
* *
24978468 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
24978494 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
24978520 C
1 C
24978521 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:24978849 original size:159 final size:158
Alignment explanation
Indices: 24978493--24978995 Score: 414
Period size: 158 Copynumber: 3.2 Consensus size: 158
24978483 AGCTCCGTAT
* * * * *
24978493 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTACGGGCACTCGG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCGA
* * * *
24978558 TCGCCCGAAGAGGTAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCTAGCGTGCTGTCGATCC
66 CCGCCCGAAGAGGTAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTAGCGTGCTGCCGATCC
* *
24978623 CGCTACCACAACTCTCGGTCCAGTCCGA
131 CGCTACCACAACCCTCGGTCCACTCCGA
* * * * *
24978651 TCTTAGAC-TAGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACT-G
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCG
* * * *
24978714 AACCGGCCGAAGAGG-CGTAATGCGCAAGCCAGGGATCGACCCGATCCCTCTCT-GCGTGTTGCC
65 -ACCGCCCGAAGAGGTAG-AATGCACAAGCCAGGGATCGACCCGATCCC-C-CTAGCGTGCTGCC
* * *
24978777 -AGTCCCGCTGCCACAACCCTCGGTCCGACT-GGG
126 GA-TCCCGCTACCACAACCCTCGGTCC-ACTCCGA
* * * * ** **
24978810 GCTTGGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGTGCTTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCGA
** * * * * * *
24978875 CCAACCGAAGAGGTAGAATACGCAAGCC-GAGGATC-AGTCCGGTCCCCCCT-GTGTGCTGTCGA
66 CCGCCCGAAGAGGTAGAATGCACAAGCCAG-GGATCGA-CCCGAT-CCCCCTAGCGTGCTGCCGA
** *** *
24978937 TCCAACTACCACAACCCTCGGTCTGGTCTGA
128 TCCCGCTACCACAACCCTCGGTCCACTCCGA
* *
24978968 TCTTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
24978996 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 57, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
157 5 0.02
158 143 0.53
159 115 0.42
160 9 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCGA
CCGCCCGAAGAGGTAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTAGCGTGCTGCCGATCC
CGCTACCACAACCCTCGGTCCACTCCGA
Found at i:24979005 original size:26 final size:26
Alignment explanation
Indices: 24978969--24979021 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24978959 CTGGTCTGAT
24978969 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
24978995 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
24979021 C
1 C
24979022 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:24980534 original size:25 final size:25
Alignment explanation
Indices: 24980498--24980545 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
24980488 TACGATCTTA
24980498 GACTGGGAATGAACACCGTATGCTT
1 GACTGGGAATGAACACCGTATGCTT
* *
24980523 GACTGGGGATGAACTCCGTATGC
1 GACTGGGAATGAACACCGTATGC
24980546 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.23
Consensus pattern (25 bp):
GACTGGGAATGAACACCGTATGCTT
Found at i:24981959 original size:26 final size:26
Alignment explanation
Indices: 24981930--24981983 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
24981920 AGTCCGATCT
24981930 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
* * **
24981956 TAGAGTGGGGATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCATATGCC
24981982 TA
1 TA
24981984 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:24982279 original size:368 final size:367
Alignment explanation
Indices: 24981589--24982399 Score: 907
Period size: 368 Copynumber: 2.2 Consensus size: 367
24981579 GGTCCGACCT
* ** * * * *
24981589 TAGACTGGGAATGAACTCCGTATGTGTAAGTTAACCCATGAAACGAGCATGCGAGCGTTCAGTCG
1 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGTCG
* * * * * *
24981654 ACCGGAGAGGCTGGTCGAAGAGGCATAACGTGCAAGTCAGGGATCAGCCCGGTCCCCTCTGCGTG
66 ACCGGAGAGGCCGATCGAAAAGGCATAACGCGCAAGTCAGGGATCAGCCCGATCCCCTCTACGTG
* * * *
24981719 CTGCCGATCTCACTACCGGTCCTGCTGCCACAACCCTCGATCCGACTGGGGGTTAGACATGGAAT
131 CTACCGATCCCACTACCGGTCCTACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAAT
* * * * *
24981784 GTACTCTGTATGCCTAAGCCAAGCCACAAAATGAGCGTGCGGGCGCTTAGCCAGCCAGAGAGGCA
196 GTACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGCCAGCCAGAGAGACA
** * *
24981849 GAATGTGCAAGTCGGGGATCGACCTGGTCCCCCCAACGTGCTACCGATCCTGCTACCGCAACCCT
261 GAATGCACAAGTCAGGGATCGACCCGGTCCCCCCAACGTGCTACCGATCCTGCTACCGCAACCCT
*
24981914 CGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCC
326 CAATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCC
* *
24981956 TAGAGTGGGGATGAACTCTGTATGCCTAAGTCAACCCACCG-AACGAGCGTGCGGGCGCTT-AGT
1 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCG-TTCAGT
* * * *
24982019 CTACTGGAGAGGCCGATCGAAAAGGCATAACGCGTAAGTC-GAGGATCAGCCCGATCCTCCTTTA
64 CGACCGGAGAGGCCGATCGAAAAGGCATAACGCGCAAGTCAG-GGATCAGCCCGATCC-CCTCTA
* ** * * *
24982083 CGTGCTATCGATCCCGTTGCCGGTCCTACTGCCACAACCCTCAGTTCTG-CTGGGGCTTAGACAT
127 CGTGCTACCGATCCCACTACCGGTCCTACTGCCACAACCCTC-GATCCGACTGGGGCTTAGACAT
*** * * * *
24982147 GGAATGTACT-TCGTATGCCTAAGCCAACCCGTGAAACGAGTATGTGGGCGCTCAGCCGGTC-GA
191 GGAATGTACTCT-GTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGCCAGCCAG-
* * *** ** **
24982210 AGAGACAGAATGCATAAG-CTAGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGTC
254 AGAGACAGAATGCACAAGTC-AGGGATCGACCCGGTCCCCCCAACGTGCTACCGATCCTGCTACC
* * ** *
24982274 GCAACCCTCAATCCAGTGCGATCTTAGACTGGGAGTGAACTCTGTATGCT
318 GCAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCC
* * * * *
24982324 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAACGTGCGGGTGCTCAGCCG
1 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGTCG
*
24982389 ACCAGAGAGGC
66 ACCGGAGAGGC
24982400 AGGATGCGCA
Statistics
Matches: 364, Mismatches: 70, Indels: 19
0.80 0.15 0.04
Matches are distributed among these distances:
366 1 0.00
367 102 0.28
368 257 0.71
369 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (367 bp):
TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGTCG
ACCGGAGAGGCCGATCGAAAAGGCATAACGCGCAAGTCAGGGATCAGCCCGATCCCCTCTACGTG
CTACCGATCCCACTACCGGTCCTACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAAT
GTACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGCCAGCCAGAGAGACA
GAATGCACAAGTCAGGGATCGACCCGGTCCCCCCAACGTGCTACCGATCCTGCTACCGCAACCCT
CAATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCC
Found at i:24982332 original size:26 final size:26
Alignment explanation
Indices: 24982296--24982348 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
24982286 CCAGTGCGAT
*
24982296 CTTAGACT-GGGAGTGAACTCTGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
24982322 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
24982348 C
1 C
24982349 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:24983888 original size:26 final size:26
Alignment explanation
Indices: 24983859--24983909 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
24983849 CCGATTTGAT
24983859 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
24983885 CTTAGACTGGGGATGAACTCCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
24983910 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:24986081 original size:26 final size:26
Alignment explanation
Indices: 24986031--24986083 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
24986021 GGCTCAAAAT
*
24986031 CTTAGACTGGGAATGAGCTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
24986057 CTTAGACAT-GGAATGAAC-TCTGTATG
1 CTTAGAC-TGGGAATGAACTTC-GTATG
24986083 C
1 C
24986084 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 21 0.88
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:24986604 original size:158 final size:156
Alignment explanation
Indices: 24986057--24986607 Score: 484
Period size: 159 Copynumber: 3.5 Consensus size: 156
24986047 GCTTCGTATG
* * * **
24986057 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGGAACGAGCAAGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
24986122 C-AGCCGGAGAGGCAGAATGCGTAAGCCGGGGATC-GACTGGTCCCCCCTGCGTGCTGTCGATCT
66 CGA-CCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCAGCGTGCTGTCGATCC
* * *
24986185 TGCTGCTGCAACCCTCAGTCTAGTTTGA
130 TGCTGCCGCAACCCTCGGTCT-GTCTGA
* * * * *
24986213 TCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGAGGGCACTGA
1 -CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * ** * * * *
24986277 ACCGATCGAAGAGGCATAGTGTGCAAGCCAAGGATCGACCCGGTCCCCATCTA-CGTGCTGCCGG
64 GCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCC--CCAGCGTGCTGTCGA
* * ** *
24986341 TCCCGCTGCCACAACCCTCGGTCTAACTGGGG
127 TCCTGCTGCCGCAACCCTCGGTCTGTCT--GA
* * * * *
24986373 CTTAGACATGGAATGACCTCCCTATGCCTAAGCCAACCTACGAAACGGGCGTGCAGGCGA-TCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-ACTCAG
* * * * * *
24986437 CCGATCGGAGAGGCAAAATGCACAAGCTGGGGATCGGCCCGATCCCCCCAGCGTGCTATCTATCC
65 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCAGCGTGCTGTCGATCC
24986502 TGCTGCCGCAACCCTCGGTCTGGTCTGA
130 TGCTGCCGCAACCCTCGGTCT-GTCTGA
* * *
24986530 CATTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTTA
1 C-TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* *
24986594 CCCGGCCGGAGAGG
64 GCCGACCGGAGAGG
24986608 TCGGTTGAGA
Statistics
Matches: 304, Mismatches: 76, Indels: 27
0.75 0.19 0.07
Matches are distributed among these distances:
156 1 0.00
157 82 0.27
158 101 0.33
159 116 0.38
160 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCAGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCTGTCTGA
Found at i:24986908 original size:26 final size:26
Alignment explanation
Indices: 24986872--24986924 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
24986862 CCGATCCGAT
24986872 CTTAGACT-GGGAGTGAACTCTGTATG
1 CTTAGACTGGGGA-TGAACTCTGTATG
24986898 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
24986924 C
1 C
24986925 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:24987632 original size:25 final size:26
Alignment explanation
Indices: 24987604--24987655 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
24987594 GGCTCAAAAT
*
24987604 CTTAGAC-TGGGAATGAGCTC-GTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
24987629 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
24987655 C
1 C
24987656 CTAAACCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:24987982 original size:158 final size:156
Alignment explanation
Indices: 24987629--24988121 Score: 471
Period size: 158 Copynumber: 3.1 Consensus size: 156
24987619 AGCTCGTATG
* * *
24987629 CTTAGACATGGAATGAACT-CTGTATGCCTAAACCAACCCATGGAACGAACGTGCGGGCGCTCGA
1 CTTAGACATGGAATGAACTCCT-TATGCC-AAGCCAACCCATGAAACGAATGTGCGGGCGCT-GA
* * * * *
24987693 -CAGGTCGAAGAGGTAGAATGCGCAAGTCGGGGATTGACCCGGTCCCCGC-TGCGTGCTGTCGAT
63 GCA-GTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCC-CTTGCGTGCTGCCGAT
** *
24987756 CGTACTGCCACAACCCTCGATCCGGTCTGAT
126 CCCACTGCCACAACCCTCGATCCGGTCTGAC
* * * *
24987787 CTTAGAC-TGGGAATGAACTCCGTATGCGTAAGTCAACCCATGAAACGAATGTGCGGGCCCTGAG
1 CTTAGACAT-GGAATGAACTCCTTATGC-CAAGCCAACCCATGAAACGAATGTGCGGGCGCTGAG
* * * * * *
24987851 CCGATCGAAGAGGCATAATGCGCAAGCCGGGGATCGGGCTGGTCCCCCTTTGGGTGCTGCCGGTC
64 CAG-TCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-TTGCGTGCTGCCGATC
* * *
24987916 CCGCTGCCACAACCCTCGGTCCGG-CTGGGC
127 CCACTGCCACAACCCTCGATCCGGTCT-GAC
* ** * *
24987946 CTTAGACATGGAATGAGCTCCTTATGCCAAGCCAACCCATGAAACGGGTGTACGGGCGCTCAGCA
1 CTTAGACATGGAATGAACTCCTTATGCCAAGCCAACCCATGAAACGAATGTGCGGGCGCTGAGCA
* * * * * **
24988011 GGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCC-TGCATGCTACCGATCCTG
66 GTC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGCTGCCGATCCCA
* *
24988075 CTGCCGCAACCCTCGATCCGGT-TCGAT
130 CTGCCACAACCCTCGATCCGGTCT-GAC
24988102 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
24988122 TGTAAGCTTA
Statistics
Matches: 272, Mismatches: 51, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
155 1 0.00
156 51 0.19
157 6 0.02
158 156 0.57
159 57 0.21
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCTTATGCCAAGCCAACCCATGAAACGAATGTGCGGGCGCTGAGCA
GTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTTGCGTGCTGCCGATCCCAC
TGCCACAACCCTCGATCCGGTCTGAC
Found at i:24988143 original size:26 final size:26
Alignment explanation
Indices: 24988102--24988151 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
24988092 CCGGTTCGAT
24988102 CTTAGACTGGGAATGAACTCTGTAAG
1 CTTAGACTGGGAATGAACTCTGTAAG
24988128 CTTAGACTAGGG-ATGAACTCTGTA
1 CTTAGACT-GGGAATGAACTCTGTA
24988152 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTAAG
Found at i:24988498 original size:26 final size:26
Alignment explanation
Indices: 24988469--24988521 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24988459 CCAGTCCGAT
24988469 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
** *
24988495 CTTAGACTGGGGGTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24988521 C
1 C
24988522 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24989742 original size:26 final size:26
Alignment explanation
Indices: 24989703--24989756 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
24989693 GGTCCGATCT
*
24989703 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
24989729 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
24989755 TA
1 TA
24989757 ATTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:24990086 original size:26 final size:25
Alignment explanation
Indices: 24990057--24990133 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 25
24990047 GGTTCGATCT
24990057 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGG-ATGAACTCCGTATGCA
*
24990083 TAGACTGAGGATGAACTCCGTATGCT
1 TAGACTG-GGATGAACTCCGTATGCA
*
24990109 TAGTCTGGGGATGAACTCCGTATGC
1 TAGACT-GGGATGAACTCCGTATGC
24990134 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
26 44 0.94
27 3 0.06
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (25 bp):
TAGACTGGGATGAACTCCGTATGCA
Found at i:24990394 original size:370 final size:373
Alignment explanation
Indices: 24989703--24990480 Score: 876
Period size: 370 Copynumber: 2.1 Consensus size: 373
24989693 GGTCCGATCT
* *
24989703 TAGACTGGGAATGAACTCTGTATGCCTAGACTGGGGATGAACTCCGTATGCCTAATTCAACCCAT
1 TAGACTGGG-ATGAACTCTGTATGCCTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* * *
24989768 GAAACGAGAGTGCGGGCGCTCAGTCGGTCGGAGAGGCATAATGCGCAAGCCAGGGATCAACCCGG
65 GAAAC-AGAG-GC-GGCGC-CA--CGGTCGGAGAGGCATAATACACAAGCCAGGGATCAACCCAG
* * * * *
24989833 TCCCTCTTTGCATGCTACCGATCTCACTCCGGTCCTATTGCCACAACCCTCGATCCAGCTGGGGC
124 TCCCCCTCTGCATGCTACCGATCCCACTCCGGTCCTACTACCACAACCCTCGATCCAGCTGGGGC
* * * * * **
24989898 TTAGAGGTGGAATGTACTCTGTATGCCTAAGCCAACAGACGAAACTAGCGTGCGGGTGCTCAACC
189 TTAGACGTGAAATGTACTCTGTATGCCTAAGCCAACACACGAAACGAGCATGCGGGCACTCAACC
* * * * *
24989963 GGCCTGAGAGGCAGAATGAGCAAGCCGAGGATCAGCCCGATCCCCCTTGCGTGCTGTCGATCTTG
254 GACCGGAGAGGCAGAATGAGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGGGCTGTCGATCCTG
** * * * *
24990028 TTGCCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCA
319 CAGCCGCAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCA
* * *
24990083 TAGACTGAGGATGAACTCCGTATGCTTAGTCTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
1 TAGACTG-GGATGAACTCTGTATGCCTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* * *
24990148 GAAAC-GA-GC-GTG-CA-GGTCGGAGAGGCATAATACATAAGCC-GAGGATCAGCCCAGTCCCC
65 GAAACAGAGGCGGCGCCACGGTCGGAGAGGCATAATACACAAGCCAG-GGATCAACCCAGTCCCC
* * * * * *
24990207 CTCTGCATGCTGCCTATCCCGCTATCGGTCC-AGCTACCACAACCCTCGGTCCGGCTGGGGCTTA
129 CTCTGCATGCTACCGATCCCACT-CCGGTCCTA-CTACCACAACCCTCGATCCAGCTGGGGCTTA
* *
24990271 GACGTGAAATGTACT-TCGTATGCCTAAGTCAACCCAC-AGAACGAGCATGCGGGCACTCAACCG
192 GACGTGAAATGTACTCT-GTATGCCTAAGCCAACACACGA-AACGAGCATGCGGGCACTCAACCG
* * * *
24990334 ACCGGAGAGGTAGAATGCA-CAAGTC-ACGGATCGGCCTGATCCCCCCTGCGGGCTGTCGATCCT
255 ACCGGAGAGGCAGAATG-AGCAAGCCGA-GGATCAGCCCGATCCCCCCTGCGGGCTGTCGATCCT
* * * *
24990397 GCAGTCGCAACCCTCAATCTGATCCGATCTTAGATTGGGAATGAACTCCATATGCT
318 GCAGCCGCAACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCA
*
24990453 TAGATTGGGGATGAACTCTGTATGCCTA
1 TAGACT-GGGATGAACTCTGTATGCCTA
24990481 AGTCAACCCA
Statistics
Matches: 336, Mismatches: 53, Indels: 28
0.81 0.13 0.07
Matches are distributed among these distances:
368 1 0.00
369 59 0.18
370 202 0.60
371 2 0.01
372 2 0.01
374 2 0.01
376 2 0.01
378 2 0.01
380 62 0.18
381 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (373 bp):
TAGACTGGGATGAACTCTGTATGCCTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG
AAACAGAGGCGGCGCCACGGTCGGAGAGGCATAATACACAAGCCAGGGATCAACCCAGTCCCCCT
CTGCATGCTACCGATCCCACTCCGGTCCTACTACCACAACCCTCGATCCAGCTGGGGCTTAGACG
TGAAATGTACTCTGTATGCCTAAGCCAACACACGAAACGAGCATGCGGGCACTCAACCGACCGGA
GAGGCAGAATGAGCAAGCCGAGGATCAGCCCGATCCCCCCTGCGGGCTGTCGATCCTGCAGCCGC
AACCCTCAATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCA
Found at i:24991720 original size:26 final size:26
Alignment explanation
Indices: 24991684--24991736 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24991674 TTGGTCCAAT
*
24991684 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
24991710 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24991736 C
1 C
24991737 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24992095 original size:26 final size:26
Alignment explanation
Indices: 24992054--24992158 Score: 185
Period size: 26 Copynumber: 4.0 Consensus size: 26
24992044 CCAGTCCGAT
24992054 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCTGTATG
24992080 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
24992106 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
*
24992132 CTTAGACTATGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
24992158 C
1 C
24992159 CTAAGTCAAC
Statistics
Matches: 77, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
26 74 0.96
27 3 0.04
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATG
Found at i:24993356 original size:26 final size:26
Alignment explanation
Indices: 24993327--24993379 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
24993317 TTAATCCGAT
*
24993327 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
* * *
24993353 CTTAGACTGGGGACGAACTTCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
24993379 C
1 C
24993380 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:24993731 original size:26 final size:26
Alignment explanation
Indices: 24993695--24993747 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24993685 CCGGTTTGAT
*
24993695 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24993721 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24993747 C
1 C
24993748 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24995017 original size:25 final size:26
Alignment explanation
Indices: 24994967--24995018 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24994957 CTAATCCGAT
24994967 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
24994993 CTTAGACTGGGGAT-AACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
24995018 C
1 C
24995019 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Done.