Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 255 of 402
Found at i:24995271 original size:26 final size:26
Alignment explanation
Indices: 24995242--24995293 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
24995232 CCGATCCAAT
24995242 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
24995268 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24995294 ACAAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24996630 original size:159 final size:159
Alignment explanation
Indices: 24996328--24997416 Score: 747
Period size: 159 Copynumber: 6.7 Consensus size: 159
24996318 AGCTTCGTAT
* *
24996328 GCTTAGAC-ATGGAATGAACTCCGCATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
24996392 ACCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCTCCC-CTACGTGCTGTCAA
65 ACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCC-CCCTCTGCGTGCTGCCAG
* ** **
24996456 TCCTTCTACTGCAACCCTCGGTTCGGTCCAA
129 TCCTACTACCACAACCCTCGGTTCGGTCGGA
* * * * * * * *
24996487 TCTTAGACTAGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGTTGAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * *
24996552 TCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCAGTC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCAGTC
* * *
24996617 CTACTGCCACAACCCTCGG-TCTGGTTGGG
131 CTACTACCACAACCCTCGGTTC-GGTCGGA
* * * * * * * *
24996646 GCTTGGACAAGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGTTCAA
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * ** * * *
24996711 CCG-GCTAGAGAGGCACAATGCGTAAGCCAAGGAACGACCTGGT-CCCCTCTGCGTGCTGCCAAT
66 CCGACCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCAGT
* * * * *
24996774 CCTACTATCACAACCCTCAGTCCGATCCGA
130 CCTACTACCACAACCCTCGGTTCGGTCGGA
* * * *
24996804 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCG--C--
* * * * * *
24996869 TCAATCGGAGAGGCCAATCGGAGAGGCATAATACGCAAGCCGGGGATC-AGCCCGGTCTCCCTTT
62 TCAA-C--CGA---C---CGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCTCT
* * *
24996933 GCGTGTTGCTGATCCCACTACCGGTCCTACTACCACAACCCTCGGTT-TGACTGGG
117 GC--G-TGCTG----C-C-A---GTCCTACTACCACAACCCTCGGTTCGGTC-GGA
* *
24996988 GCTTAGACGT-GGAATGTACTCCGTATGCCTAAG-CAACCCATGAAACGAGCATGCGGGCGCTCA
1 GCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * * *
24997051 GCTGGCCGAAGAGGCAGAATGCGTAAACCAGGGATCAACCCCAGTCCCCC-CTACGTGCTGTC-G
65 ACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCTCTGCGTGCTGCCAG
* * * * * * *
24997114 ATCCTGCTATCGCAACCCTCAGTCCGATCTGA
129 -TCCTACTACCACAACCCTCGGTTCGGTCGGA
* * * * * * * *
24997146 TCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTACGGGCACTGAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
*** * * * * *
24997211 CC-AGTTAAAGAGGCATAATGCGCAAGCC-GGGATC-AGTCTGGTCCCTCTCTGCGTGCTGTCAG
66 CCGA-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCTCTGCGTGCTGCCAG
** * * *
24997273 TCCCGCTGCCACAACCTTCGGTTCGG-CTGGG
129 TCCTACTACCACAACCCTCGGTTCGGTC-GGA
* * * *
24997304 GCTTAGAC-ATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTC-
1 GCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
*
24997367 ACCGATC-AGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCT
65 ACCGACCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCT
24997417 ATGTGCTGTC
Statistics
Matches: 717, Mismatches: 164, Indels: 99
0.73 0.17 0.10
Matches are distributed among these distances:
156 1 0.00
157 34 0.05
158 248 0.35
159 257 0.36
160 1 0.00
162 5 0.01
163 1 0.00
165 1 0.00
167 5 0.01
168 1 0.00
170 27 0.04
171 36 0.05
172 8 0.01
173 1 0.00
174 1 0.00
175 5 0.01
176 1 0.00
178 1 0.00
179 4 0.01
180 1 0.00
181 2 0.00
183 25 0.03
184 50 0.07
185 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCAGTC
CTACTACCACAACCCTCGGTTCGGTCGGA
Found at i:24996888 original size:13 final size:13
Alignment explanation
Indices: 24996870--24996895 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24996860 GGCGCTCAGT
24996870 CAATCGGAGAGGC
1 CAATCGGAGAGGC
24996883 CAATCGGAGAGGC
1 CAATCGGAGAGGC
24996896 ATAATACGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.38, T:0.08
Consensus pattern (13 bp):
CAATCGGAGAGGC
Found at i:24997833 original size:26 final size:26
Alignment explanation
Indices: 24997804--24997856 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24997794 ATGGTCCGAT
*
24997804 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24997830 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24997856 C
1 C
24997857 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:24998317 original size:26 final size:26
Alignment explanation
Indices: 24998288--24998337 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
24998278 CCGGTCTGAT
24998288 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
24998314 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
24998338 CGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:24998684 original size:26 final size:26
Alignment explanation
Indices: 24998643--24998695 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24998633 TTGGTCCAAT
*
24998643 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
24998669 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
24998695 C
1 C
24998696 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:24999586 original size:26 final size:26
Alignment explanation
Indices: 24999557--24999609 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24999547 CCGGTCCAAT
24999557 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
24999583 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
24999609 C
1 C
24999610 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:24999961 original size:26 final size:26
Alignment explanation
Indices: 24999925--24999976 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
24999915 CCAGTCCAAT
24999925 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
24999951 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24999977 GCTAAGTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25000115 original size:368 final size:368
Alignment explanation
Indices: 24999402--25000233 Score: 936
Period size: 368 Copynumber: 2.3 Consensus size: 368
24999392 CGATATGCTT
* * ** * * * *
24999402 AGACATGGAATGAACTCCATATGCCTAAGCCAACAGATGAAACAAGGGTGCGGGCGCTCAGCCGA
1 AGACGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGA
* * * *
24999467 CCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGGTCCCCCCTGCATGCTGTCGATCCTGCT
66 CCGGAAAGGCAGAATGCGCAAGCCAGGGATCAACCTGATCCCCCCTACATGCTGTCGATCCTGCT
* *
24999532 GACGCAACCCTCTGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGGAT
131 GACACAACCCTCTGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGGAT
* * **
24999597 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAATCGATTGGAGGAGCC
196 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGACCGGAGGAGCC
* * * * * * ** * *
24999662 GACCAGAGAGGCATAATGCGTAAGTCGGGGACCAGCTCGGTCCCCCTCTGTATGCTGCCAATCCC
261 GACCAGAAAGGCATAATGCGCAAGCCGAGGACAAGCCCAATCCCCCTCTGCATGCTACCAATCCC
*
24999727 ACTGCCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTG
326 ACTGCCAGTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTG
*
24999770 AGACGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGA
1 AGACGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGA
* * *
24999835 CCGGAAAGGCAGAATGCGCAAGTCAGGGATCAACCTGATCCCCCCTACGTGCTG-CTGATCTTGC
66 CCGGAAAGGCAGAATGCGCAAGCCAGGGATCAACCTGATCCCCCCTACATGCTGTC-GATCCTGC
* * *
24999899 TGCCACAACCCTC-GATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
130 TGACACAACCCTCTG-TCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGG
* * * * *
24999963 ATGAACTCCGTATGGCTAAGTTAACCCATGAAACGAGCGTGCAGGTGCTCAGCCGACCGGA-GAG
194 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGACCGGAGGA-
** ** * * * * * *
25000027 GTTGGTCGGAAAGGCATAATGTGCAAGCCGAGGATAAGCCCAATCCCCCTCTGCGTGCTATCGAT
258 GCCGACCAGAAAGGCATAATGCGCAAGCCGAGGACAAGCCCAATCCCCCTCTGCATGCTACCAAT
* ** * * *
25000092 CTCGTTGCC-GATCCTGTTGCCACAACGCTCGGTCCGACTAGGGCTT
323 CCCACTGCCAG-TCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTG
* ** * * * * * *
25000138 AGATGTGGAATGTTA-TCTGTATGCCTAAGTCAACCCACGAAACAAGTGTACGAGCGCTCAGCCG
1 AGACGTGGAATG-TACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCG
* * * * * *
25000202 ACCAGAGACGCAGGATGCGCAACCCGGGGATC
65 ACCGGAAAGGCAGAATGCGCAAGCCAGGGATC
25000234 GAACGGGTGG
Statistics
Matches: 385, Mismatches: 74, Indels: 10
0.82 0.16 0.02
Matches are distributed among these distances:
367 5 0.01
368 378 0.98
369 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (368 bp):
AGACGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGA
CCGGAAAGGCAGAATGCGCAAGCCAGGGATCAACCTGATCCCCCCTACATGCTGTCGATCCTGCT
GACACAACCCTCTGTCCAGTCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGGAT
GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGACCGGAGGAGCC
GACCAGAAAGGCATAATGCGCAAGCCGAGGACAAGCCCAATCCCCCTCTGCATGCTACCAATCCC
ACTGCCAGTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTG
Found at i:25000514 original size:26 final size:26
Alignment explanation
Indices: 25000478--25000530 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25000468 CCAGTCCGAT
*
25000478 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25000504 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25000530 C
1 C
25000531 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25001532 original size:26 final size:26
Alignment explanation
Indices: 25001503--25001555 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25001493 CCGATCTGAT
25001503 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25001529 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25001555 C
1 C
25001556 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25003055 original size:26 final size:25
Alignment explanation
Indices: 25003026--25003077 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
25003016 CTGATCTGAT
*
25003026 CTTAGACT-AGGAATGAACTCTGTATG
1 CTTAGACTGAGG-ATAAACTC-GTATG
25003052 CTTAGACTGAGGATAAACTCGTATG
1 CTTAGACTGAGGATAAACTCGTATG
25003077 C
1 C
25003078 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 6 0.25
26 15 0.62
27 3 0.12
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTAGACTGAGGATAAACTCGTATG
Found at i:25004095 original size:159 final size:158
Alignment explanation
Indices: 25003772--25004273 Score: 417
Period size: 159 Copynumber: 3.2 Consensus size: 158
25003762 AGCTCCGTAT
* * * **
25003772 GCTTAGACAT-GGAATGAACTCCGTATGCCTAA-CCAACCCATGAAA-TGAGCGTGCGGGTGCTC
1 GCTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAACCCATGAAACGGA-CGTGCGGGCACTC
* * * * * * * * ***
25003834 AACCGATCAG-AGAGGCAGAATGCACAAGCTGGGGATTGACTCGATCCCCCCTGTGTGCTATTGA
64 AGCC-AGCCGAAGAGGCAGAATGCGCAAACTGGGGATCGACCCGATCCCCCCTGCGTGCTGCAGA
* ** * *
25003898 TCCTGCTACCACAATACTCTGTCCGGTCT-GA
128 TCCCGCTACCACAACCCTCGGTCC-GACTGGA
* * ** * * * *
25003929 TCTTAGACTGGGAAAGAACTCCATATGCATAAGTTAATCCATTAAAC-GAGCGTGCGGGCGCTGA
1 GCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCATGAAACGGA-CGTGCGGGCACTCA
*** * * * *
25003993 GTTGGCCGAAGGGGCATAATGTGCAAACTGGGGATCGACCCGATCCCCCTCTGTGTGCTGCCAG-
65 GCCAGCCGAAGAGGCAGAATGCGCAAACTGGGGATCGACCCGATCCCCC-CTGCGTGCTG-CAGA
* *
25004057 TCCCGCTCCCACAACCCTCGGTCCGGCTGGA
128 TCCCGCTACCACAACCCTCGGTCCGACTGGA
* * *
25004088 GCTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAACCCATGAAACGGACGTGCGGGCACTCA
* * * *
25004152 GCCAGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGTAGATC
65 GCCAGCCGAAGAGGCAGAATGCGCAAACTGGGGATCGACCCGATCCCCCCTGCGTGCTGCAGATC
* * * * *
25004217 CTGCTACCGCTACCCTCGGTCCGATTTGA
130 CCGCTACCACAACCCTCGGTCCGACTGGA
*
25004246 TCTTAGACTGGGAATGAACTCCATATGC
1 GCTTAGACTGGGAATGAACTCCATATGC
25004274 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 64, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 31 0.11
158 116 0.43
159 118 0.44
160 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCATGAAACGGACGTGCGGGCACTCAG
CCAGCCGAAGAGGCAGAATGCGCAAACTGGGGATCGACCCGATCCCCCCTGCGTGCTGCAGATCC
CGCTACCACAACCCTCGGTCCGACTGGA
Found at i:25004283 original size:26 final size:26
Alignment explanation
Indices: 25004247--25004299 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25004237 CCGATTTGAT
25004247 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25004273 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25004299 C
1 C
25004300 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25004919 original size:26 final size:26
Alignment explanation
Indices: 25004868--25004920 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25004858 CCGGTCTGAT
* **
25004868 CTTAGATTGTGAATGAACTCTTTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
25004894 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
25004920 C
1 C
25004921 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.36
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:25006333 original size:26 final size:26
Alignment explanation
Indices: 25006297--25006349 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25006287 CTGGTCCGAT
*
25006297 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25006323 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25006349 C
1 C
25006350 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25007362 original size:184 final size:184
Alignment explanation
Indices: 25007033--25007369 Score: 430
Period size: 184 Copynumber: 1.8 Consensus size: 184
25007023 CTTAGATTGC
* * **
25007033 GAATGAGCTCCGTATGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAATGGG
1 GAATGAACTCCGTATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAA
* * *
25007098 CGTGCGGGCGCTCGGCCGACCGGAGAGGCAGAATGCGTAAGTCGAGGATCAGCCCTGCCCCTTCC
66 CGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGTAAGCCGAGGATCAGCCCTGCCCCTTCC
* *
25007163 ACGTTCTGCCGATCCTACTGTCGCAACCCTCGGTTTGGTTCGATGTTAAACTGG
131 ACGTGCTACCGATCCTACTGTCGCAACCCTCGGTTTGGTTCGATGTTAAACTGG
* ** * *
25007217 GAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCTGTATGGCTAAGTCAACCCATGAAATGA
1 GAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGA
* **
25007281 ACGTGTGGGCGCTCAGCCGGTCGGAGAGGCA-AATACGTAAGCC-AGAGATCAG-CCTGGTCCCC
65 ACGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGTAAGCCGAG-GATCAGCCCT-G-CCCC
* * *
25007343 TTCTACGTGCTATCGATCCTGCTGTCG
127 TTCCACGTGCTACCGATCCTACTGTCG
25007370 GTCCATCTAC
Statistics
Matches: 129, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
182 5 0.04
183 18 0.14
184 106 0.82
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (184 bp):
GAATGAACTCCGTATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAA
CGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGTAAGCCGAGGATCAGCCCTGCCCCTTCC
ACGTGCTACCGATCCTACTGTCGCAACCCTCGGTTTGGTTCGATGTTAAACTGG
Found at i:25007612 original size:26 final size:26
Alignment explanation
Indices: 25007561--25007613 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25007551 CCGGTCTGAT
* *
25007561 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25007587 CTTAGACTGAGG-ATGAACTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
25007613 C
1 C
25007614 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25007969 original size:26 final size:26
Alignment explanation
Indices: 25007928--25007980 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25007918 CCAGTCTGAT
25007928 CTTAGACTGAGAATGAACTCTATATG
1 CTTAGACTGAGAATGAACTCTATATG
* * *
25007954 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTATATG
25007980 C
1 C
25007981 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTATATG
Found at i:25009413 original size:26 final size:26
Alignment explanation
Indices: 25009377--25009429 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25009367 CCGATCTGAT
*
25009377 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25009403 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25009429 C
1 C
25009430 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25009527 original size:185 final size:185
Alignment explanation
Indices: 25009190--25009531 Score: 420
Period size: 185 Copynumber: 1.8 Consensus size: 185
25009180 GTGTCCGAAA
* * * *
25009190 ATCTTAGATTGAGAATGAGCTTCGTACGCTTAAACATGGAATGAACTTCGTATGCCTAAGCTAAC
1 ATCTTAGACTGAGAATGAACTTCGTACGCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
25009255 CCATGAAATCAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGAAGAATGCGTAAGTCGAGGATCGAA
66 CCACGAAATCAGCGTGCGGGCGCTCAACCAACCGGAGAGGAAGAATGCGCAAGCCGAGGATCGAA
* *
25009320 CTGGTCCCCCCCTGCATGCTGTCGATCCTGCTACCACAACCCTCGGTCCGATCTG
131 CCGATCCCCCCCTGCATGCTGTCGATCCTGCTACCACAACCCTCGGTCCGATCTG
* * * *
25009375 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTGAGAATGAACTTCGTACGCTTAAACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
25009439 CCCACGAAA-CGAGCGTTCGGGCGCTCAATCAACCGGAGAGGCATAATGTGCAAGCCGAGGATC-
65 CCCACGAAATC-AGCGTGCGGGCGCTCAACCAACCGGAGAGGAAGAATGCGCAAGCCGAGGATCG
* * * *
25009502 AGCCCGATCCCTCTCTGCGTGCTGTCGATC
129 A-ACCGATCCCCCCCTGCATGCTGTCGATC
25009532 TCGCTGCCAG
Statistics
Matches: 130, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
184 3 0.02
185 127 0.98
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.21
Consensus pattern (185 bp):
ATCTTAGACTGAGAATGAACTTCGTACGCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAATCAGCGTGCGGGCGCTCAACCAACCGGAGAGGAAGAATGCGCAAGCCGAGGATCGAA
CCGATCCCCCCCTGCATGCTGTCGATCCTGCTACCACAACCCTCGGTCCGATCTG
Found at i:25009761 original size:26 final size:26
Alignment explanation
Indices: 25009732--25009784 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25009722 CCGATCTGAT
*
25009732 CTTAGCCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25009758 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25009784 C
1 C
25009785 CTACGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25011057 original size:158 final size:158
Alignment explanation
Indices: 25010491--25011322 Score: 570
Period size: 158 Copynumber: 5.2 Consensus size: 158
25010481 GCTCTGTATG
* * *
25010491 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAG
* * * * * * * **
25010555 CTGGTTGGAAAGGCAGAATGCGCAAGCCGGGGATTGACTCGGTCCCCC-CTGCGTGCTGTCGATC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATC
* * *
25010619 TTGTTGCCGCAACCCTCAGTCCGATCTGAT
129 CTGTTGCCACAACCCTCAGTCCGATTTGAT
* * ** * * * * *
25010649 CTTAGACTGGGAATGAACTCTGTATGCATTTGTCAACCCACGAAACGAGCGTGTGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGC
* * * * * *
25010714 CGGTCGAAGAGGCATAATGCGCAAGCCGAAGATTGGCCCGATCCCCCTCTGCGTGCTGCCGGTCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGATCCCCCTCTGCGTGCTACCGATCC
* * ** * **
25010779 CGCTGCCACAACCCTCAGTCCGGCTGGGG
130 TGTTGCCACAACCCTCAGTCCGATTTGAT
* * * * * *
25010808 CTTAGACAT-GGAATGAGCTCCCTATGCTTGAGCCAACCCATGAAAC-AGACGTGCGGGTGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGA-GTGCGGGCGCTCA
** * * * *
25010871 GCCGACCGGAGAGGTAGAATGCACAAGCCGGTGATCGGCTCGA-CCCTCC-CTACGTGCTACCGA
64 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGG-GATCGGCCCGATCCC-CCTCTGCGTGCTACCGA
** **
25010934 TCCTGTTGGTACAACCCTC-GATTTGATTTGAT
127 TCCTGTTGCCACAACCCTCAG-TCCGATTTGAT
* ** *
25010966 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAATGAGAGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGC
* * * *
25011031 CGGTCGGAGAGGCATAATGCGTAAGCCAGGGATCAGCCCGATCCCCCTCTGCATGCTACCGATCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATCCCCCTCTGCGTGCTACCGA---
* ** * **
25011096 TCGCTGCCGGTCCTGCTACGACAACCCTCAGTTCGGCTGGGG
127 TC-CT----GT--TGC--C-ACAACCCTCAGTCCGATTTGAT
* * * * * * *
25011138 CTTAGA-TGTCGAATGTACTTCGTATGCCTAAGCGAACCCATGAAACGAGCGTGCAGGCGCTCAG
1 CTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAG
* ** * * * *
25011202 CCGGTCAGAGAGGCAGAATGCATAAGCCAGAGATCGGTCCG-GCGCCCC-CTGCGTGCTGCCGAT
65 CCGGTCGGAGAGGCAGAATGCGCAAGCC-GGGATCGGCCCGATC-CCCCTCTGCGTGCTACCGAT
* * * **
25011265 CCTGCTGTCGCAACCCTC-GATCCGATTCAAT
128 CCTGTTGCCACAACCCTCAG-TCCGATTTGAT
*
25011296 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
25011323 TTAGACCAGG
Statistics
Matches: 518, Mismatches: 125, Indels: 62
0.73 0.18 0.09
Matches are distributed among these distances:
157 5 0.01
158 237 0.46
159 139 0.27
160 1 0.00
161 2 0.00
162 2 0.00
163 3 0.01
167 4 0.01
168 2 0.00
169 2 0.00
171 15 0.03
172 105 0.20
173 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGATCCT
GTTGCCACAACCCTCAGTCCGATTTGAT
Found at i:25011281 original size:330 final size:315
Alignment explanation
Indices: 25010490--25011322 Score: 884
Period size: 317 Copynumber: 2.6 Consensus size: 315
25010480 AGCTCTGTAT
* *
25010490 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATCGAATG-ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
25010555 CTGGTTGGAAAGGCAGAATGCGCAAGCCGGGGATTGACTCGGTCCCCCCTGCGTGCTGTCGATCT
65 CCGGTCGGAGAGGCAGAATGCACAAGCCGGAGATCGGCTCGG-CCCCCCTGCGTGCTGCCGATCC
* * **
25010620 TGTTGCCGCAACCCTC-AGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCATTTGTCA
129 TGTTGTCGCAACCCTCGA-TCCGATTTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCA
* * * * **
25010684 ACCCACGAAACGAGCGTGTGGGTGCTGAGCCGGTCGAAGAGGCATAATGCGCAAGCCGAAGATTG
193 ACCCACGAAACGAGAGTGCGGGCGCTCAGCCGGTCGAAGAGGCATAATGCGCAAGCCGAAGATCA
*
25010749 GCCCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCAGTCCGGCTGGG
258 GCCCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTACCACAACCCTCAGTCCGGCTGGG
* * * * *
25010807 GCTTAGACATGGAATGAGCTCCCTATGCTTGAGCCAACCCATGAAAC-AGACGTGCGGGTGCTCA
1 GCTTAGACATCGAATGA-CTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCGCTCA
** * * * * *
25010871 GCCGACCGGAGAGGTAGAATGCACAAGCCGGTGATCGGCTCGACCCTCCCTACGTGCTACCGATC
64 GCCGGTCGGAGAGGCAGAATGCACAAGCCGGAGATCGGCTCGGCCC-CCCTGCGTGCTGCCGATC
* ** * * * *
25010936 CTGTTGGT-ACAACCCTCGATTTGATTTGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGTG
128 CTGTT-GTCGCAACCCTCGATCCGATTTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTC
* * * *
25011000 AACCCACGAAATGAGAGTGCGGGCGCTCAGCCGGTCGGAGAGGCATAATGCGTAAGCC-AGGGAT
192 AACCCACGAAACGAGAGTGCGGGCGCTCAGCCGGTCGAAGAGGCATAATGCGCAAGCCGA-AGAT
* * *
25011064 CAGCCCGATCCCCCTCTGCATGCTACCGATCCTCGCTGCCGGTCCTGCTACGACAACCCTCAGTT
256 CAGCCCGAT-CCCC-CT-C-TG----CG----T-GCTGCCGGTCCCGCTACCACAACCCTCAGTC
25011129 CGGCTGGG
308 CGGCTGGG
** * * *
25011137 GCTTAGATGTCGAATGTACTTCGTATGCCTAAGCGAACCCATGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATCGAATG-ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
25011202 CCGGTCAGAGAGGCAGAATGCATAAGCCAGAGATCGG-TCCGGCGCCCCCTGCGTGCTGCCGATC
65 CCGGTCGGAGAGGCAGAATGCACAAGCCGGAGATCGGCT-CGGC-CCCCCTGCGTGCTGCCGATC
* **
25011266 CTGCTGTCGCAACCCTCGATCCGATTCAATCTTAGACTGGGAATGAACTCTGTATGC
128 CTGTTGTCGCAACCCTCGATCCGATTTGATCTTAGACTGGGAATGAACTCTGTATGC
25011323 TTAGACCAGG
Statistics
Matches: 419, Mismatches: 73, Indels: 35
0.80 0.14 0.07
Matches are distributed among these distances:
316 7 0.02
317 210 0.50
318 6 0.01
319 2 0.00
320 1 0.00
321 2 0.00
325 2 0.00
329 4 0.01
330 180 0.43
331 5 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (315 bp):
GCTTAGACATCGAATGACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCACAAGCCGGAGATCGGCTCGGCCCCCCTGCGTGCTGCCGATCCTG
TTGTCGCAACCCTCGATCCGATTTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACC
CACGAAACGAGAGTGCGGGCGCTCAGCCGGTCGAAGAGGCATAATGCGCAAGCCGAAGATCAGCC
CGATCCCCCTCTGCGTGCTGCCGGTCCCGCTACCACAACCCTCAGTCCGGCTGGG
Found at i:25011667 original size:26 final size:26
Alignment explanation
Indices: 25011631--25011683 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25011621 CTAGTCTGAT
* *
25011631 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
25011657 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
25011683 C
1 C
25011684 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:25011720 original size:335 final size:335
Alignment explanation
Indices: 25011102--25011720 Score: 789
Period size: 335 Copynumber: 1.8 Consensus size: 335
25011092 ATCCTCGCTG
* * * * *
25011102 CCGGTCCTGCTACGACAACCCTCAGTTCGGCTGGGGCTTAGATGTCGAATGTACTTCGTATGCCT
1 CCGGTCCTGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACGTCGAATGTACTCCGTATGCCT
* * * * *
25011167 AAGCGAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGTCAGAGAGGCAGAATGCATAAGCCAG
66 AAGCCAACACACGAAACGAGCGTGCAGGCGCTCAGCCGCTCAGAGAGGCAGAATGCACAAGCCAG
* * * * *
25011232 AGATCGGTCCGGCGCCCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTCGATCCGATTCAATC
131 AGATCGGTCCGGCGCCCCCTGCGTGCTACCGAACCTACTGTCGCAACCCTCAATCCGAGTCAATC
* * *
25011297 TTAGACTGGGAATGAACTCTGTATGCTTAGACCAGGGATGAACTTCGTATGCCTAAGTCAACCTA
196 TTAGACTGGGAATGAACTCTGTATGCTTAGACCAGGGATAAACTCCGTATGCCTAAGTCAACCCA
* *
25011362 CGAAACAAGCATGCGGGCGCTCAGCCAACCGGAGAGGTCGATCAGAGAGGCATAATACGTAAGCC
261 CAAAACAAGCATGCGGACGCTCAGCCAACCGGAGAGGTCGATCAGAGAGGCATAATACGTAAGCC
25011427 AGGGATCAGC
326 AGGGATCAGC
* * * *
25011437 CCGGTGCTGCTACCATAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCT
1 CCGGTCCTGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACGTCGAATGTACTCCGTATGCCT
* * * *
25011502 AAGCCAACACACGAAACGAGCGTGCGGGCGCTCAGCCAGCT-GGAGAGGTAGAATGCGCAAGCC-
66 AAGCCAACACACGAAACGAGCGTGCAGGCGCTCAGCC-GCTCAGAGAGGCAGAATGCACAAGCCA
* * * * ** *
25011565 GATGATCGGTCCAGTC-CCTCCTGCGTGCTACTGAACTTACTGTCGCAATGCTCAAT-CTAGTCT
130 GA-GATCGGTCC-GGCGCCCCCTGCGTGCTACCGAACCTACTGTCGCAACCCTCAATCCGAGTC-
* **
25011628 GATCTTAGACTGGGAATGAACT-TCGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCA
192 AATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACCAGGGATAAACTCCGTATGCCTAAGTCA
** *
25011692 ACCCACAAAATGAGCATGTGGACGCTCAG
256 ACCCACAAAACAAGCATGCGGACGCTCAG
25011721 TCGACCAGAG
Statistics
Matches: 238, Mismatches: 41, Indels: 10
0.82 0.14 0.03
Matches are distributed among these distances:
334 7 0.03
335 227 0.95
336 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (335 bp):
CCGGTCCTGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACGTCGAATGTACTCCGTATGCCT
AAGCCAACACACGAAACGAGCGTGCAGGCGCTCAGCCGCTCAGAGAGGCAGAATGCACAAGCCAG
AGATCGGTCCGGCGCCCCCTGCGTGCTACCGAACCTACTGTCGCAACCCTCAATCCGAGTCAATC
TTAGACTGGGAATGAACTCTGTATGCTTAGACCAGGGATAAACTCCGTATGCCTAAGTCAACCCA
CAAAACAAGCATGCGGACGCTCAGCCAACCGGAGAGGTCGATCAGAGAGGCATAATACGTAAGCC
AGGGATCAGC
Found at i:25013212 original size:26 final size:27
Alignment explanation
Indices: 25013176--25013233 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
25013166 CTGGTCCAAT
25013176 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
*
25013202 CTTAGACTGGGGATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
25013229 CTTAG
1 CTTAG
25013234 TCAACCCATG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:25014448 original size:26 final size:26
Alignment explanation
Indices: 25014419--25014471 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25014409 CTAGTCCGAT
25014419 CTTAAACT-GGGAATGAACTCCGTATG
1 CTTAAACTAGGG-ATGAACTCCGTATG
* *
25014445 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAAACTAGGGATGAACTCCGTATG
25014471 C
1 C
25014472 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTAGGGATGAACTCCGTATG
Found at i:25014838 original size:26 final size:26
Alignment explanation
Indices: 25014787--25014839 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25014777 TCCGTCCAAT
*
25014787 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
25014813 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGAAATGAACTCCATATG
25014839 C
1 C
25014840 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:25015106 original size:355 final size:353
Alignment explanation
Indices: 25014258--25015279 Score: 1056
Period size: 355 Copynumber: 2.8 Consensus size: 353
25014248 AGACTAGTTG
* * * * * *
25014258 GGGCTTAGACATGGAATG-AGCTCCCTATGCCCAAGCCAACCAACGAAACGGACGTGCGGACGCT
1 GGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCGGGCGCT
* * * * * * *
25014322 CAACCGACCGGAGAGGAAGAACGCGCAAGTGGGGGATCGACCCGATCCCCCCTACGTGCTATCGA
65 CAACCGATCAGAGAGGAAGAATGCGCAAGT-GGGGATCG-CTCGGTCCCTCCTACGTGCTGTCGA
* ** * * *
25014387 TCTTGCTATCGTAACCCTCGA-TCTAGTCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGA
128 TCCTGCTGCCGCAA-CCTCGATTC-CGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * *
25014451 CTAGGGATGAACT-TCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTCAGCCGATC
191 CTGGGGATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGTC
* * * *
25014515 GAAGAGGCCAGCCGGATAGGCATATTGCGCAAGTCAGGGATCAGCCTGGTCCCCCTCTGCATGCT
255 GAAGA-G---G-C--ATA-G-ATA-T-AGCAAGCCAGGGATCAGCCCGGTCCCCCTCTACATGCT
* ** *
25014580 ACCGATCCCGCTACTGGTCCTGCTACCACAACCCTCGGTCCGGCT
309 ACCAATCCCGCTACTAATCCTGCTACCACAACCCTCGGTCCGACT
* * * *
25014625 GGGCCTTAGACTTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACGATTGTGCGAGCGCT
1 GGG-CTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCGGGCGCT
* * * * *
25014690 CAACCGGTCAGAGAGGTAGAATGCGCAAATTGGGGATCGGTCTGGTCTCTCCTACGTGCTGTCGA
65 CAACCGATCAGAGAGGAAGAATGCGC-AAGTGGGGATCGCTC-GGTCCCTCCTACGTGCTGTCGA
* *
25014755 TCCTGCTGCCGCAATCCTCGATTCCGTCCAATCTTAGACTGGAAATGAACTCCGTATGCTTAGAC
128 TCCTGCTGCCGCAA-CCTCGATTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
25014820 TGGGGATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGTCGGTCGA
192 TGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGTCGA
* * * * *
25014885 AGAGGCATA-ATA-AGTAAGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTATCAATCTCGCT-
257 AGAGGCATAGATATAGCAAGCCAGGGATCAGCCCGGTCCCCCTCTACATGCTACCAATCCCGCTA
* *
25014947 GTCAATCCTGCTACCACAACCCTCGGTCTGACT
322 CT-AATCCTGCTACCACAACCCTCGGTCCGACT
*
25014980 AGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAATGTGCGGGCGCT
1 -GGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCGGGCGCT
** * * * **
25015045 CAGTCGATCAGAGAGGCAGAATACGCAAGCTGGGGTTCAGCTCGGTCCCTCCTGGGTGCTGTCGA
65 CAACCGATCAGAGAGGAAGAATGCGCAAG-TGGGGATC-GCTCGGTCCCTCCTACGTGCTGTCGA
* * * * * *
25015110 TCCTGCTGCTGCAACCTTTGATT-CGATCCGATCTTAGACTGGGAATGATCTCTGTAAGCTTATA
128 TCCTGCTGCCGCAACC-TCGATTCCG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * *
25015174 CTGGGGATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCGCTCAACCGGTCG
191 CTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGTCG
* * ** *
25015239 GAGAGGCAGA-ATGCA-CAAGCCAGGGATC-GACCCGATCCCCC
256 AAGAGGCATAGATATAGCAAGCCAGGGATCAG-CCCGGTCCCCC
25015280 CTGCGTGCCA
Statistics
Matches: 553, Mismatches: 88, Indels: 40
0.81 0.13 0.06
Matches are distributed among these distances:
354 8 0.01
355 308 0.56
356 7 0.01
358 3 0.01
361 3 0.01
363 1 0.00
364 1 0.00
367 5 0.01
368 210 0.38
369 7 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (353 bp):
GGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCGGGCGCTC
AACCGATCAGAGAGGAAGAATGCGCAAGTGGGGATCGCTCGGTCCCTCCTACGTGCTGTCGATCC
TGCTGCCGCAACCTCGATTCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
GATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGTCGAAGAG
GCATAGATATAGCAAGCCAGGGATCAGCCCGGTCCCCCTCTACATGCTACCAATCCCGCTACTAA
TCCTGCTACCACAACCCTCGGTCCGACT
Found at i:25015171 original size:26 final size:26
Alignment explanation
Indices: 25015142--25015191 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
25015132 TCGATCCGAT
*
25015142 CTTAGACTGGGAATGATCTCTGTAAG
1 CTTAGACTGGGAATGAACTCTGTAAG
* *
25015168 CTTATACTGGGGATGAACTCTGTA
1 CTTAGACTGGGAATGAACTCTGTA
25015192 TGCCTAAGCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTAAG
Found at i:25015329 original size:184 final size:184
Alignment explanation
Indices: 25015000--25015341 Score: 427
Period size: 184 Copynumber: 1.9 Consensus size: 184
25014990 CATGGAATGT
* * **
25015000 ACTCCGTATGCCTAAGCCAACCCACGAAATGAATGTGCGGGCGCTCAGTCGATCAGAGAGGCAGA
1 ACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCAGGCGCTCAACCGATCAGAGAGGCAGA
* ** * * * * * ** * * *
25015065 ATACGCAAGCTGGGGTTCAGCTCGGTCCCTCCTGGGTGCTGTCGATCCTGCTGCTGCAACCTTTG
66 ATACACAAGCCAGGGATCAGCCCGATCCCCCCTGCGTGCCATCGATCCTACTGCTGCAACCCTCG
25015130 ATTCGATCCGATCTTAGACTGGGAATGATCTCTGTAAGCTTATACTGGGGATGA
131 ATTCGATCCGATCTTAGACTGGGAATGATCTCTGTAAGCTTATACTGGGGATGA
* * * *
25015184 ACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCGCTCAACCGGTCGGAGAGGCAGA
1 ACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCAGGCGCTCAACCGATCAGAGAGGCAGA
* *
25015249 ATGCACAAGCCAGGGATC-GACCCGATCCCCCCTGCGTGCCATCGATCCTACTGCTGTAACCCTC
66 ATACACAAGCCAGGGATCAG-CCCGATCCCCCCTGCGTGCCATCGATCCTACTGCTGCAACCCTC
* *
25015313 G-GTCTGATCTGATCTTAGACTGGGAATGA
130 GATTC-GATCCGATCTTAGACTGGGAATGA
25015342 ACTCCGTATG
Statistics
Matches: 131, Mismatches: 25, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
183 3 0.02
184 128 0.98
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (184 bp):
ACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCAGGCGCTCAACCGATCAGAGAGGCAGA
ATACACAAGCCAGGGATCAGCCCGATCCCCCCTGCGTGCCATCGATCCTACTGCTGCAACCCTCG
ATTCGATCCGATCTTAGACTGGGAATGATCTCTGTAAGCTTATACTGGGGATGA
Found at i:25015671 original size:26 final size:26
Alignment explanation
Indices: 25015642--25015694 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25015632 CTGGTTCGAT
25015642 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
25015668 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
25015694 C
1 C
25015695 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:25017125 original size:158 final size:157
Alignment explanation
Indices: 25016752--25017211 Score: 392
Period size: 159 Copynumber: 2.9 Consensus size: 157
25016742 AGCTCTGTAT
* * * * * * * * *
25016752 GCTTAGGCATGGAATGAACTTCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACAAGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * **
25016817 CCTG--CTAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCCGATGTGCTGTCGA
66 CC-GACCGA-AGAGGCAGAATGCACAAGCCGGGGATCAACCCGGT-CCCCCTGGCGTGCTGTCGA
** ** * ***
25016880 TCCTGCTACCGTAACCCTCGGTCTAG-TCCAA
128 TCCCACTACCACAA-CCTCGGTCCAGCT-GGG
* * * * *
25016911 TCTTAGACAAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTGAG
1 GCTTAGACAAGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * *
25016976 CCGGCTGAAGAGGCATAATGCACAAGTCGGGGATCAACCCGGTCTCCCTCT-GCGTGCTGTCGGT
66 CCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCAACCCGGTC-CCC-CTGGCGTGCTGTCGAT
25017040 CCCACTACCACAACCTCGGTCCAGCTGGG
129 CCCACTACCACAACCTCGGTCCAGCTGGG
* * * *
25017069 GCTTAGACAAGGAATGAGA-TCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCGTTC
1 GCTTAGACAAGGAATGA-ACTCCCTATGCATAAGCCAACCCACGAAACGA-GCATGCGGGCGCTC
* ** * *
25017132 AGTCGACCGAAGAGGCAGAATGGGCAAGCCGGGGATCAGCTCGGTCCCCCTGGCGTGCTGTCGAT
64 AGCCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCAACCCGGTCCCCCTGGCGTGCTGTCGAT
* *
25017197 CCTACTGCCACAACC
129 CCCACTACCACAACC
25017212 CTTGATTTGG
Statistics
Matches: 243, Mismatches: 50, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
156 2 0.01
157 29 0.12
158 99 0.41
159 111 0.46
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACAAGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCAACCCGGTCCCCCTGGCGTGCTGTCGATCC
CACTACCACAACCTCGGTCCAGCTGGG
Found at i:25018047 original size:26 final size:26
Alignment explanation
Indices: 25018018--25018070 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25018008 CCGGTTCGAT
25018018 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
25018044 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25018070 C
1 C
25018071 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25019271 original size:26 final size:26
Alignment explanation
Indices: 25019242--25019294 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25019232 CCGGTTCGAT
25019242 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
25019268 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25019294 C
1 C
25019295 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25020288 original size:159 final size:158
Alignment explanation
Indices: 25019989--25020626 Score: 495
Period size: 159 Copynumber: 3.9 Consensus size: 158
25019979 AGCTCCGTAT
* * * * * *
25019989 GCTTAGATATGGAATGAACTTCGTATACCTAAGCCAACCCCCAAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAGCTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * *
25020054 CCGACCGGAAAGGCAGAATGCGCAAGTTGGGGATC-GACTCGGTCTCCCC-CTGTGTGCTGTCAA
66 CCGACCGGAAAGGCATAATGCGCAAG-CCGGGATCAG-CCCGGTC-CCCCTCTGTGTGCTGTCGA
** *
25020117 TCTTGCTACCACATCCCTCGATCGGGTCT-GA
128 TCCCGCTACCACAACCCTCGATCGGG-CTGGA
* * * *
25020148 TCTTAGAC-TGGGAATGAGCTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAGCTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *
25020212 GCCGA-CTGAAATGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGTGTGCTGTCGG
65 GCCGACCGGAAA-GGCATAATGCGCAAGCC-GGGATCAGCCCGGTCCCCCTCTGTGTGCTGTCGA
* * * *
25020276 TCCCGCTGCCACAACCCTCGGTCTGGCTGGG
128 TCCCGCTACCACAACCCTCGATCGGGCTGGA
* * * * * *
25020307 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGTGCACTCAG
1 GCTTAGACATGGAATGAGCTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
25020372 TCGACCGGAGAAGG-ATAATGCACAAGCCGAGGATCAACCCGATCCCCCTCTGCGTGCTGTCGAT
66 CCGACCGGA-AAGGCATAATGCGCAAGCCG-GGATCAGCCCGGT-CCCC-CT-C-TG-TGT-G--
* * * * *
25020436 CTCGTTGCCGATCCTGCTGCCACAACCCTCGATCCGACTGGG
121 CT-G-T--CGATCCCGCTACCACAACCCTCGATCGGGCTGGA
* * * * *
25020478 GCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCAGGCCCTCA
1 GCTTAGACATGGAATG-AGCTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * * *
25020542 GTC-AGCC-GAAGAGTTAGAATGCGCAAGCCGGGGATCAACCTGGTCCCCC-CTGCGTGCTGTCG
65 GCCGA-CCGGAA-AGGCATAATGCGCAAGCC-GGGATCAGCCCGGTCCCCCTCTGTGTGCTGTCG
* * *
25020604 ATCCTGCTGCCGCAACCCTCGAT
127 ATCCCGCTACCACAACCCTCGAT
25020627 TCGATTCGAT
Statistics
Matches: 393, Mismatches: 59, Indels: 55
0.78 0.12 0.11
Matches are distributed among these distances:
158 37 0.09
159 196 0.50
160 12 0.03
161 5 0.01
162 3 0.01
163 2 0.01
164 4 0.01
165 3 0.01
166 2 0.01
167 3 0.01
168 1 0.00
169 3 0.01
170 9 0.02
171 111 0.28
172 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAGCTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAAAGGCATAATGCGCAAGCCGGGATCAGCCCGGTCCCCCTCTGTGTGCTGTCGATCC
CGCTACCACAACCCTCGATCGGGCTGGA
Found at i:25020571 original size:171 final size:170
Alignment explanation
Indices: 25020280--25020606 Score: 437
Period size: 171 Copynumber: 1.9 Consensus size: 170
25020270 TGTCGGTCCC
* * *
25020280 GCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAAC
** * *
25020345 CCACGAAACGGGCATGCGTGCACTCAGTCGACCGGAGAAGGATAATGCACAAGCCGAGGATCAAC
66 CCACGAAACGAACATGCGTGCACTCAGTCGACCGAAGAAGGAGAATGCACAAGCCGAGGATCAAC
25020410 CCGATCCCCCTCTGCGTGCTGTCGATCTCGTTGCCGATCCT
131 CCGATCCCCC-CTGCGTGCTGTCGATCTCGTTGCCGATCCT
*
25020451 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAA
1 GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAA
* * * * * *
25020515 CCCATGAAACGAACGTGCAG-GCCCTCAGTC-AGCCGAAG-AGTTAGAATGCGCAAGCCGGGGAT
65 CCCACGAAACGAACATGC-GTGCACTCAGTCGA-CCGAAGAAG-GAGAATGCACAAGCCGAGGAT
* *
25020577 CAACCTGGTCCCCCCTGCGTGCTGTCGATC
127 CAACCCGATCCCCCCTGCGTGCTGTCGATC
25020607 CTGCTGCCGC
Statistics
Matches: 136, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
170 19 0.14
171 115 0.85
172 2 0.01
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.18
Consensus pattern (170 bp):
GCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAAC
CCACGAAACGAACATGCGTGCACTCAGTCGACCGAAGAAGGAGAATGCACAAGCCGAGGATCAAC
CCGATCCCCCCTGCGTGCTGTCGATCTCGTTGCCGATCCT
Found at i:25020673 original size:26 final size:26
Alignment explanation
Indices: 25020637--25020686 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
25020627 TCGATTCGAT
*
25020637 CTTAGACTGGGAATGAACTTTGTACG
1 CTTAGACTGGGAATGAACTCTGTACG
*
25020663 CTTAGACTGGGGATGAACTCTGTA
1 CTTAGACTGGGAATGAACTCTGTA
25020687 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTACG
Found at i:25021020 original size:26 final size:26
Alignment explanation
Indices: 25020991--25021043 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25020981 CCGATCCAAT
25020991 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25021017 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25021043 C
1 C
25021044 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25022064 original size:159 final size:157
Alignment explanation
Indices: 25021710--25022245 Score: 664
Period size: 159 Copynumber: 3.4 Consensus size: 157
25021700 CCTCCGTATG
* * * * *
25021710 CTTAGACATGGAATGAGCTCTGTACGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAGC
*
25021775 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCC-CTGCATGCTGTCGATCC
65 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCTCTGCATGCTGTGGATCC
* * *
25021839 TGCTGCCACCCCCTCGGTCCGATCCAAT
130 TGCTGCCACACCCTCGGTCCGGTCCGAT
* * * * *
25021867 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGTACTCAGC
1 CTTAGACT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAGC
*
25021932 CGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAATCCCCCCTCTGCATGCTGTGGATC
65 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAAT-CCCCCTCTGCATGCTGTGGATC
25021997 CTGCTGCCACACCCTCGGTCCGGTCCGAT
129 CTGCTGCCACACCCTCGGTCCGGTCCGAT
* * *
25022026 CTTCGACTGGAAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTTAGC
1 CTTAGACTGG-AATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAGC
* ** * * * * *
25022091 CGGTCAAACAGGCATAATGCGCAAGCTGGGGATCGAACCGATCCCCCTCTGCATGCTGTCGG-TC
65 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCTCTGCATGCTGT-GGATC
* * **
25022155 CCGCTGCCACAACCCTCGGTCCGG-CTGGGG
129 CTGCTGCCAC-ACCCTCGGTCCGGTC-CGAT
* * * * *
25022185 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGAGCACT
1 CTTAGAC-TGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACT
25022246 CAGTCGGCTA
Statistics
Matches: 331, Mismatches: 40, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
156 1 0.00
157 96 0.29
158 36 0.11
159 195 0.59
160 3 0.01
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAGCC
GATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCTCTGCATGCTGTGGATCCT
GCTGCCACACCCTCGGTCCGGTCCGAT
Found at i:25022372 original size:26 final size:26
Alignment explanation
Indices: 25022331--25022383 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25022321 CTGATCCAAT
25022331 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25022357 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACT-AGGAATGAACTCCGTATG
25022383 C
1 C
25022384 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25022735 original size:26 final size:26
Alignment explanation
Indices: 25022699--25022751 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25022689 TAGGTCTAAT
25022699 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
25022725 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
25022751 C
1 C
25022752 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:25023878 original size:157 final size:158
Alignment explanation
Indices: 25023652--25024150 Score: 448
Period size: 157 Copynumber: 3.2 Consensus size: 158
25023642 CTGGCTGGGG
* ** *
25023652 CTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
*
25023716 TCGGCCGGAGA-GCAGAATGCGCAAG-TCGGGGATCAGTCTGGTCCCCCCTACGTGCTGTCGATC
65 TCGGCCGGAGAGGCAGAATGCGCAAGCT-GGGGATCAGCCTGGTCCCCCCTACGTGCTGTCGATC
25023779 CTGCTACCGTAACCCTTGATCCGGTCTGAT
129 CTGCTACCGTAACCCTTGATCCGGTCTGAT
* * *
25023809 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGT
* * * * * * * *
25023874 CGGCCAGAGAGGTATAATACGTAAGCTGGGGATCAGCCTGTTGCCCCTCTGA-GTGCTGCCGATC
66 CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCTGGT-CCCCCCT-ACGTGCTGTCGATC
* * * **
25023938 CTGCTGTCGGT---CC-T-ACTACC-ATAAC-CCT
129 CTGCT-ACCGTAACCCTTGA-T-CCGGT--CTGAT
* * * * * *
25023966 CTTAGAC-GTGGAATGTACT-TCGTATGCCTAAGCCAACCCACAAAACGAACGTGCGAGTGCTCA
1 CTTAGACTG-GGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * ** * *
25024029 GTCGGTCGGAGAGGCAGAATGCACAAGCTGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATC
64 GTCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCTGGTCCCCCCTACGTGCTGTCGATC
* ** ** *
25024094 CTACTGTCACAACCCTTGATTCGGTCTGAT
129 CTGCTACCGTAACCCTTGATCCGGTCTGAT
*
25024124 CTTAGACTAGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCTGTATGC
25024151 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 56, Indels: 43
0.73 0.15 0.12
Matches are distributed among these distances:
155 1 0.00
156 27 0.10
157 154 0.58
158 50 0.19
159 27 0.10
160 5 0.02
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGT
CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCTGGTCCCCCCTACGTGCTGTCGATCCT
GCTACCGTAACCCTTGATCCGGTCTGAT
Found at i:25024175 original size:26 final size:26
Alignment explanation
Indices: 25024124--25024176 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
25024114 TCGGTCTGAT
*
25024124 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTATATG
* *
25024150 CTTAGACTGGGGATGAACT-TCATATG
1 CTTAGACTAGGAATGAACTCT-ATATG
25024176 C
1 C
25024177 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTATATG
Found at i:25024980 original size:158 final size:157
Alignment explanation
Indices: 25024733--25025317 Score: 450
Period size: 158 Copynumber: 3.7 Consensus size: 157
25024723 CCGTTCGATT
* * * * * * * * *
25024733 TTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCTACGAAATGAGCGT-GCAGGCACTGAG
1 TTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCATAG-GGGCACTCAG
* * *
25024796 CCGACCGAAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCCCTCTATGTGCTGTCTAT-C
64 CCGAGCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGTGTGCTG-CTATCC
25024860 TCGCTGCCACAACCCTCAGTCCGGCTGGGGC
128 T-GCTGCCACAACCCTCAGTCCGGCTGGGGC
* *
25024891 TTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATG-GACATGGGGGCACTCAG-
1 TTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAG-CATAGGGGCACTCAGC
* * * * * * * *
25024954 CGGGCAGGAGAGGCAGAATGCACAAGCTGGGGATCAGCCCGATCCCCTCTGTATGCTGCTGATCC
65 CGAGC-GAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGTGTGCTGCT-ATCC
* * **
25025019 TGCTACCGCAACCCTCAGTCCGGCCT-GATC
128 TGCTGCCACAACCCTCAGTCCGG-CTGGGGC
* * * * * * * ** *
25025049 TTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTATGGGCGTTGAGC
1 TTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCATAGGGGCACTCAGC
* * * * * * * **
25025113 CGATCGAAAAGGCATAATGGGCAAGCCGGGGATTGACCCAGTCCCCCTCTGCGTGCTGCCGGTCC
65 CGAGCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCTCTGTGTGCTG-CTATCC
**
25025178 TGCTGCCACAACCCTC-GATCCAACTGGGGC
128 TGCTGCCACAACCCTCAG-TCCGGCTGGGGC
* * * **
25025208 TTAGACATGGAATGAGCTCCCTATGCCTAAGGCAACCCACGAAACGGGCGT-GTGGGCGTTCAGC
1 TTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCATAG-GGGCACTCAGC
* * * * * ** *
25025272 CGACCGGAGAGGCAGAATGTGTAAGCCAAGGATCGGCTCGGTCCCC
65 CGAGCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCC
25025318 CTTGCGTGCT
Statistics
Matches: 333, Mismatches: 78, Indels: 32
0.75 0.18 0.07
Matches are distributed among these distances:
157 7 0.02
158 196 0.59
159 128 0.38
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (157 bp):
TTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCATAGGGGCACTCAGCC
GAGCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGTGTGCTGCTATCCTGC
TGCCACAACCCTCAGTCCGGCTGGGGC
Found at i:25025298 original size:159 final size:158
Alignment explanation
Indices: 25024794--25025351 Score: 507
Period size: 158 Copynumber: 3.5 Consensus size: 158
25024784 GCAGGCACTG
* * ** * *
25024794 AGCCGACCGAAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCCCTCTATGTGCTGTCTAT
1 AGCCGACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCTCTGCGTGCTGCCGAT
* *
25024859 -CTCGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGC
66 CCT-GCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGC
* * * * **
25024923 CAACCCACGAAATGGACATGGGGGCACTC
130 CAACCCACGAAACGGGCGTGTGGGCGTTC
* * * * ** * * ** *
25024952 AGCGGGCAGGAGAGGCAGAATGCACAAGCTGGGGATC-AGCCCGATCCCCTCTGTATGCTGCTGA
1 AGCCGACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGA-CCCGGTCCCCTCTGCGTGCTGCCGA
* * ** * * *
25025016 TCCTGCTACCGCAACCCTCAGTCCGGCCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCATAA
65 TCCTGCTACCACAACCCTCAGTCC-GACTGGGGCTTAGACAT-GGAATGAGCTCCCTATGCCTAA
* * * * *
25025079 GTCAACCCATGAAACGAGCGTATGGGCGTTG
128 GCCAACCCACGAAACGGGCGTGTGGGCGTTC
* * * * * * *
25025110 AGCCGATCGAAAAGGCATAATGGGCAAGCCGGGGATTGACCCAGTCCCCCTCTGCGTGCTGCCGG
1 AGCCGACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGT-CCCCTCTGCGTGCTGCCGA
* *
25025175 TCCTGCTGCCACAACCCTC-GATCCAACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAG
65 TCCTGCTACCACAACCCTCAG-TCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAG
*
25025239 GCAACCCACGAAACGGGCGTGTGGGCGTTC
129 CCAACCCACGAAACGGGCGTGTGGGCGTTC
* * ** * * **
25025269 AGCCGACCGGAGAGGCAGAATGTGTAAGCCAAGGATCGGCTCGGTCCCC-CTTGCGTGCTATCGA
1 AGCCGACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCTC-TGCGTGCTGCCGA
*
25025333 TCCTGCTACCGCAACCCTC
65 TCCTGCTACCACAACCCTC
25025352 GGTCTGGTCT
Statistics
Matches: 308, Mismatches: 82, Indels: 20
0.75 0.20 0.05
Matches are distributed among these distances:
157 2 0.01
158 178 0.58
159 127 0.41
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
AGCCGACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCTCTGCGTGCTGCCGAT
CCTGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCC
AACCCACGAAACGGGCGTGTGGGCGTTC
Found at i:25025337 original size:317 final size:314
Alignment explanation
Indices: 25024687--25025391 Score: 849
Period size: 317 Copynumber: 2.2 Consensus size: 314
25024677 CCAGCACCCA
* * * *
25024687 TTGCATGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGTTC-GATTTTAGACTGGGAATGAACT
1 TTGCATGCT-TCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
* * * *
25024751 CCGTATGCATAAGTCAACCTACGAAATGAGCGTGCAGGCACTGAGCCGACCGAAGAGGCATAATG
65 CCGTATGCATAAGTCAACCCACGAAACGAGCGTACAGGCACTGAGCCGACCGAAAAGGCATAATG
* * * * * *
25024816 TGCAAGCCGGGGATCGGCCCGGTCCCCTCTATGTGCTGTCTATCTCGCTGCCACAACCCTCAGTC
130 GGCAAGCCGGGGATCGACCCAGTCCCCTCTACGTGCTGCCGATCTCGCTGCCACAACCCTCAGTC
** *
25024881 CGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGACATGGGG
195 CAACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGACATGGGG
* * ***
25024946 GCACTCAGCGGGCAGGAGAGGCAGAATGCACAAGCTGGGGATCAGCCCGATCCCC
260 GCACTCAGCCGACAGGAGAGGCAGAATGCACAAGCCAAGGATCAGCCCGATCCCC
* * * *
25025001 TCTGTATGCTGCTGATCCTGCTACCGCAACCCTCAGTCCGGCCTGATCTTAGACTGGGAATGAAC
1 T-TGCATGCTTC-GATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* ** ** *
25025066 TCCGTATGCATAAGTCAACCCATGAAACGAGCGTATGGGCGTTGAGCCGATCGAAAAGGCATAAT
64 TCCGTATGCATAAGTCAACCCACGAAACGAGCGTACAGGCACTGAGCCGACCGAAAAGGCATAAT
* * *
25025131 GGGCAAGCCGGGGATTGACCCAGTCCCCCTCTGCGTGCTGCCGGTC-CTGCTGCCACAACCCTC-
129 GGGCAAGCCGGGGATCGACCCAGT-CCCCTCTACGTGCTGCCGATCTC-GCTGCCACAACCCTCA
* * *
25025194 GATCCAACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGGCAACCCACGAAACGGGCGT
192 G-TCCAACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGACAT
* ** * *** * * *
25025259 GTGGGCGTTCAGCCGACCGGAGAGGCAGAATGTGTAAGCCAAGGATCGGCTCGGTCCCCC
256 GGGGGCACTCAGCCGACAGGAGAGGCAGAATGCACAAGCCAAGGATCAGCCCGAT-CCCC
* * * *
25025319 TTGCGTGCTATCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGCAGTGAACT
1 TTGCATGCT-TCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
25025384 CCGTATGC
65 CCGTATGC
25025392 TTAGACTGGG
Statistics
Matches: 327, Mismatches: 56, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
314 2 0.01
315 32 0.10
316 97 0.30
317 190 0.58
318 6 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (314 bp):
TTGCATGCTTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
CGTATGCATAAGTCAACCCACGAAACGAGCGTACAGGCACTGAGCCGACCGAAAAGGCATAATGG
GCAAGCCGGGGATCGACCCAGTCCCCTCTACGTGCTGCCGATCTCGCTGCCACAACCCTCAGTCC
AACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGACATGGGGG
CACTCAGCCGACAGGAGAGGCAGAATGCACAAGCCAAGGATCAGCCCGATCCCC
Found at i:25026569 original size:159 final size:158
Alignment explanation
Indices: 25026247--25026677 Score: 418
Period size: 159 Copynumber: 2.7 Consensus size: 158
25026237 GCTTAGACAT
* * * * * * ***
25026247 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGGTTGGAA
1 GGAATGAACTCCCTATGCATAAGCCAACCCATAAAACGAGCATGCGGCCGCTCAGCC-GACCGAA
** * *
25026312 -AGGTAGAATG-AGCAAGCCGGGGATCGACCCGGTCACCCCCTACGTGCTGCCAATCCTGCTGCC
65 GAGACAGAATGCA-CAAGCCGGGGATCGACCCGGTC-CCCCCTGCGTGCTGCCAATCCCGCTGCC
* ** * * * *
25026375 GCAACCCTCGGTCCGATTTGATCTTAGACTA
128 ACAACCCTCAATCCGACTGGAGCTTAAACTA
** ** * * * *
25026406 GGAATGAACTCGGTATGCATAAGTTAACCCATAAAATGAGCATGCGGGCGCTGAGCCGGCCGAAG
1 GGAATGAACTCCCTATGCATAAGCCAACCCATAAAACGAGCATGCGGCCGCTCAGCCGACCGAAG
* * * *
25026471 ATACATAATGCACAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCAATCCCGCTGCCAC
66 AGACAGAATGCACAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGCCAATCCCGCTGCCAC
25026536 AACCCTCAATCCGACTGGAGCTTAAAC-A
130 AACCCTCAATCCGACTGGAGCTTAAACTA
* * * * * *
25026564 TGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGCCGCTCAGTCGACCGAA
1 -GGAATGAACTCCCTATGCATAAGCCAACCCATAAAACGAGCATGCGGCCGCTCAGCCGACCGAA
* * * *
25026629 GAGGCAGAATGCGCAAGCCGGGGATCGATCCGGTCCCCACTGCGTGCTG
65 GAGACAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTG
25026678 TCGATCCCAC
Statistics
Matches: 218, Mismatches: 50, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
158 19 0.09
159 198 0.91
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (158 bp):
GGAATGAACTCCCTATGCATAAGCCAACCCATAAAACGAGCATGCGGCCGCTCAGCCGACCGAAG
AGACAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATCCCGCTGCCACA
ACCCTCAATCCGACTGGAGCTTAAACTA
Found at i:25027819 original size:26 final size:26
Alignment explanation
Indices: 25027790--25027842 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25027780 GGCTCAAAAT
* *
25027790 CTTAGAC-TGGGAATGAGCTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25027816 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25027842 C
1 C
25027843 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25028127 original size:159 final size:158
Alignment explanation
Indices: 25027815--25028261 Score: 502
Period size: 159 Copynumber: 2.8 Consensus size: 158
25027805 AGCTCTGTAT
*
25027815 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
25027880 CCGGTCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACTCGGTCCCTCCGTGCATGCTGTCAATC
66 CCGGTCGAAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCC-CCCTGCGTGCTGCCGATC
* * ** * *
25027945 CTGCTCCCGTAACCCTTGATCCGGTTCGA
130 CCGCTACCACAACCATCGATCCGGTTCGA
* * * * *
25027974 TCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
25028038 GCCGGTCGAAGTGACATAATGTGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGAT
65 GCCGGTCGAAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGAT
* * *
25028103 CCCGCTACCACAACCATCGGTCCGGTTGGG
129 CCCGCTACCACAACCATCGATCCGGTTCGA
* * * * *
25028133 GCTTAGACATGGAATGAGCTCCCTATGCCTAAACCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * *
25028198 CTGCCCGAAGAGGC-TGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATC
66 CCGGTCGAAGAGGCAT-AATGTGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATC
25028262 TTACTGCCGT
Statistics
Matches: 238, Mismatches: 46, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
158 20 0.08
159 217 0.91
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGAAGAGGCATAATGTGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCC
CGCTACCACAACCATCGATCCGGTTCGA
Found at i:25029004 original size:26 final size:26
Alignment explanation
Indices: 25028975--25029027 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25028965 CCAGTCCGAT
*
25028975 CTTAGATTGGGAATGAACTCCGTATG
1 CTTACATTGGGAATGAACTCCGTATG
*
25029001 CTTACATTGGGGATGAACTCCGTATG
1 CTTACATTGGGAATGAACTCCGTATG
25029027 C
1 C
25029028 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTACATTGGGAATGAACTCCGTATG
Found at i:25030090 original size:26 final size:26
Alignment explanation
Indices: 25030039--25030091 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
25030029 GGCTCAAAAT
* *
25030039 CTTAGACTGGGAATGAGCTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25030065 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
25030091 C
1 C
25030092 CTAAACCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25030550 original size:26 final size:26
Alignment explanation
Indices: 25030521--25030573 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25030511 CCAGTCCGAT
25030521 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
25030547 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
25030573 C
1 C
25030574 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:25030929 original size:26 final size:26
Alignment explanation
Indices: 25030888--25030940 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25030878 CCGATCTAAT
* *
25030888 CTTAGACTAGGAATGAAGTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
25030914 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25030940 C
1 C
25030941 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25031640 original size:26 final size:26
Alignment explanation
Indices: 25031611--25031663 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25031601 GGCTCAAAAT
*
25031611 CTTAGAC-TAGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
25031637 CTTAGACATGGGATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25031663 C
1 C
25031664 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25032161 original size:157 final size:156
Alignment explanation
Indices: 25031637--25032147 Score: 493
Period size: 158 Copynumber: 3.2 Consensus size: 156
25031627 GCTCCGTATG
* * *
25031637 CTTAGACATGGG-ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAG
1 CTTAGACATGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA-
* * * * *
25031701 TCAGCCGGAGAGGTAGAATGCGCAAGCCAGGGATTGACCCGATCCCCCCTGTGTGCTGTCGATCC
65 ACGGCC-GAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGGT-CCCCCTATGTGCTGTCGATCC
* * ** **
25031766 TGCT-ACTTCAACCCTCAATCCAATCCAAT
128 TGCTGACAT-AACCCTCAGTCCGGTCTGAT
* * *
25031795 CTTAGAC-TGGGAATGAGCTCCGTATGCATAAGTCAACCCATC-AAACGAGCGTGCGGGCACTGA
1 CTTAGACATGGGAATGAACTCCGTATGCATAAGCCAACCCA-CGAAACGAGCGTGCGGGCACTCA
* * * * *
25031858 GACGGTCGAAGAGGCATAATGC-CAAGCCAGGGATCGGCCCGGTCCCCCTCTGCATGCTGTC-AG
65 -ACGGCCG-AGAGGCAGAATGCGCAAGCCAGGGATTGACCCGGTCCCCCTATG--TGCTGTCGA-
* **
25031921 TCCTGCTGCCATAACCCTCAGTCCGG-CTAGGG
125 TCCTGCTGACATAACCCTCAGTCCGGTCT-GAT
* * * ** *
25031953 CTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGCGCTCAA
1 CTTAGACATGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
*
25032017 CCGGCCAGAGAGGCAGAATGCGCAAGTC-GAGGATTGACCCGGTCCCCCTATGTGCTGTCGATCC
66 -CGGCC-GAGAGGCAGAATGCGCAAGCCAG-GGATTGACCCGGTCCCCCTATGTGCTGTCGATCC
* * * *
25032081 TGCTGACGTAACCTTCGGTCTGGTCTGAT
128 TGCTGACATAACCCTCAGTCCGGTCTGAT
*
25032110 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACC
1 CTTAGACATGGGAATGAACTCCGTATGCATAAGCCAACC
25032148 TGTGAAATGA
Statistics
Matches: 289, Mismatches: 47, Indels: 35
0.78 0.13 0.09
Matches are distributed among these distances:
156 9 0.03
157 88 0.30
158 163 0.56
159 29 0.10
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
CGGCCGAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGGTCCCCCTATGTGCTGTCGATCCTGC
TGACATAACCCTCAGTCCGGTCTGAT
Found at i:25032222 original size:316 final size:316
Alignment explanation
Indices: 25031636--25032453 Score: 898
Period size: 316 Copynumber: 2.6 Consensus size: 316
25031626 AGCTCCGTAT
* * * * * *
25031636 GCTTAGACATGGGATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
* * * * *
25031701 TCAGCCGGAGAGGTAGAATGCGCAAGCCAGGGATTGACCCGATCCCCCCTGTGTGCTGTCGATCC
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGATCCCCCCTATGTGCTGTCGATCC
* *
25031766 TGCTACTTCAACCCTCAATCCAATCCAATCTTAGACTGGGAATGAGCTCCGTATGCATAAGTCAA
131 TGCTACGTCAACCCTCAATCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
* * * * **
25031831 CCCATCAAACGAGCGTGCGGGCACTGAGACGGTCGAAGAGGCATAATGCCAAGCCAGGGATCGGC
196 CCCATCAAACGAGCGTACGGGCACTGAGACGGTCGAAGAAGCATAACGCCAAACCAGGGATCAAC
* * *
25031896 CCGGTCCCCCTCTGCATGCTGTCAGTC-CTGCTGCCATAACCCTCAGTCCGGCTAGG
261 CCGATCCCCCTCTGCATGCTATCAGTCTC-GCTGCCAGAACCCTCAGTCCGGCTAGG
** *
25031952 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
* *
25032017 CCGGCCAGAGAGGCAGAATGCGCAAGTC-GAGGATTGACCCGGT-CCCCCTATGTGCTGTCGATC
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCAG-GGATTGACCCGATCCCCCCTATGTGCTGTCGATC
* ** *** **
25032080 CTGCTGACGT-AACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
130 CTGCT-ACGTCAACCCTCAATCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
** * * ** * *
25032144 AACCTGTGAAATGAGCGTACGGGTGCTGAG-CTGGTTGAAGAAGCATAACGCATAAACC-GAGGA
194 AACCCATCAAACGAGCGTACGGGCACTGAGAC-GGTCGAAGAAGCATAACGC-CAAACCAG-GGA
* ** * * *
25032207 TCAACTCGATCCCCCTCTGTGTGCTATCTGTCTCGCTGCCAGAACCCTCAGTCCGGTTGGG
256 TCAACCCGATCCCCCTCTGCATGCTATCAGTCTCGCTGCCAGAACCCTCAGTCCGGCTAGG
* * *
25032268 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGGGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
* * * *** * *
25032333 CCGGCCAGAGAGGCAGAATGCGCAAG-CTGGAGA-TCAGCCCGATCCCCTCTGCATGCTGCCAAT
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCAGG-GATTGA-CCCGATCCCCCCTATGTGCTGTCGAT
* * * * * *
25032396 CTTGCTGTCG-CAACCCTCGATCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGC
129 CCTGCT-ACGTCAACCCTCAATCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGC
25032454 TTAGACTGAG
Statistics
Matches: 420, Mismatches: 71, Indels: 21
0.82 0.14 0.04
Matches are distributed among these distances:
314 1 0.00
315 114 0.27
316 242 0.58
317 63 0.15
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGATCCCCCCTATGTGCTGTCGATCC
TGCTACGTCAACCCTCAATCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
CCCATCAAACGAGCGTACGGGCACTGAGACGGTCGAAGAAGCATAACGCCAAACCAGGGATCAAC
CCGATCCCCCTCTGCATGCTATCAGTCTCGCTGCCAGAACCCTCAGTCCGGCTAGG
Found at i:25032824 original size:26 final size:26
Alignment explanation
Indices: 25032795--25032847 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25032785 CCGGTCTAAT
25032795 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
** *
25032821 CTTAGACTGGCGATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
25032847 C
1 C
25032848 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:25033545 original size:26 final size:26
Alignment explanation
Indices: 25033516--25033568 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25033506 GGCTCAAAAT
*
25033516 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25033542 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25033568 C
1 C
25033569 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25034383 original size:26 final size:26
Alignment explanation
Indices: 25034342--25034394 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25034332 CTAATTTGAT
*
25034342 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25034368 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
25034394 C
1 C
25034395 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25037968 original size:26 final size:26
Alignment explanation
Indices: 25037939--25037991 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25037929 GGCTCAAAAT
*
25037939 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25037965 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25037991 C
1 C
25037992 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25038307 original size:159 final size:157
Alignment explanation
Indices: 25037964--25038391 Score: 466
Period size: 159 Copynumber: 2.7 Consensus size: 157
25037954 AGCTCCGTAT
* * *
25037964 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAA
*
25038029 CCGGTCGAAGAGGCAGAATGCGTAAGCCAGAGATCGACCCGATCCCCCCATGTGCTGTCGATCCT
66 CCGGTCGAAGAGGCAGAATGCGCAAGCCAGAGATCGACCCGATCCCCCCATGTGCTGTCGATCCT
** * *
25038094 GCTACCGTAACCCTCGGTCTGGTTCGA
131 GCTACCACAACCCTCGGTCCGGCTCGA
* ** * * *
25038121 TCTTAGA-TTGGGAATGAACTTTGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGA
1 GCTTAGACTT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCA
* * * * * ** *
25038185 ACCGGTCGAAGATGCATAATGCGCAAGCCAGGGATCTG-TCTGATCGCCCTCTGTGTGCTGTCGG
65 ACCGGTCGAAGAGGCAGAATGCGCAAGCCAGAGATC-GACCCGATC-CCC-CCATGTGCTGTCGA
* * *
25038249 TCCTGCTGCCACAACCCTCGGTCCGGCTGGG
127 TCCTGCTACCACAACCCTCGGTCCGGCTCGA
* * * * * *
25038280 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCAGGCGCTCAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAA
* * * * *
25038345 CCGATCGGAGAGGCAGAATGCGTAAGCC-GAGGATCGGCCCTATCCCC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCCAGA-GATCGACCCGATCCCC
25038392 TCTGCGTGCT
Statistics
Matches: 218, Mismatches: 46, Indels: 13
0.79 0.17 0.05
Matches are distributed among these distances:
156 2 0.01
157 89 0.41
158 9 0.04
159 117 0.54
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAA
CCGGTCGAAGAGGCAGAATGCGCAAGCCAGAGATCGACCCGATCCCCCCATGTGCTGTCGATCCT
GCTACCACAACCCTCGGTCCGGCTCGA
Found at i:25038480 original size:26 final size:26
Alignment explanation
Indices: 25038439--25038491 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25038429 CTAGGCCAAT
*
25038439 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
25038465 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25038491 C
1 C
25038492 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25038836 original size:26 final size:26
Alignment explanation
Indices: 25038807--25038859 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25038797 TCGGTCTGAT
*
25038807 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25038833 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25038859 C
1 C
25038860 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25039425 original size:15 final size:15
Alignment explanation
Indices: 25039394--25039426 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
25039384 CGTACACCCC
25039394 CCGGCCCCCCAATTG
1 CCGGCCCCCCAATTG
25039409 CCGGCACCCCCAA-TG
1 CCGGC-CCCCCAATTG
25039424 CCG
1 CCG
25039427 TCGATTAGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.15, C:0.55, G:0.21, T:0.09
Consensus pattern (15 bp):
CCGGCCCCCCAATTG
Found at i:25039454 original size:11 final size:11
Alignment explanation
Indices: 25039438--25039463 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
25039428 CGATTAGGCT
25039438 CTCCGACGATG
1 CTCCGACGATG
25039449 CTCCGACGATG
1 CTCCGACGATG
25039460 CTCC
1 CTCC
25039464 AGTGATAGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.42, G:0.23, T:0.19
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:25039927 original size:159 final size:157
Alignment explanation
Indices: 25039566--25040002 Score: 429
Period size: 159 Copynumber: 2.8 Consensus size: 157
25039556 CTCCGTATGT
* * *
25039566 TTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTAAGGGCGCTTAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGTGTGAGGGCG-TTAGCC
* * * * *
25039631 GATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGAA-CCGGTCACCC-CTGCATGCTGTCGATCC
65 GACCGAAGAGGCAGAATGCGCAAGC-GGGGATC-AACCCGGTCCCCCTCTGCGTGCTGCCGATCC
* ** *
25039694 TGCTACCACAAACCTTGGTCCGGTCCAATC
128 CGCTACCACAAACCTCAGTCCGGTCCAAGC
* * * * *
25039724 TTAGAC-TAGGAATGAACTCCGTATGCATAAG-TCAACCCACGAAACGAGCGTGCGGGTGTTGAG
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCATGAAACGAGTGTGAGGGCGTT-AG
* *
25039787 CCGACCGAAGAGGCATAATGCGCAAGACGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCCGGTC
63 CCGACCGAAGAGGCAGAATGCGCAAG-CGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCCGATC
* * ***
25039852 CCGCTACCACAACCCTCAGTTCGG-CTGGGGC
127 CCGCTACCACAAACCTCAGTCCGGTC-CAAGC
* * * * *
25039883 TTAGACATGGAATGAGCTCCCTATGCCTAAGCTAACCCATGAAACGGGTGTGTA-GGCGCTCAAC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGTGTG-AGGGCG-TTAGC
* * * *
25039947 CGGCCAAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGAT-CCCCTCTGCGTGCT
64 CGACCGAAGAGGCAGAATGCGCAAG-CGGGGATCAACCCGGTCCCCCTCTGCGTGCT
25040003 ACCGCAACCC
Statistics
Matches: 228, Mismatches: 40, Indels: 22
0.79 0.14 0.08
Matches are distributed among these distances:
157 5 0.02
158 103 0.45
159 117 0.51
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGTGTGAGGGCGTTAGCCG
ACCGAAGAGGCAGAATGCGCAAGCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCCGATCCCGC
TACCACAAACCTCAGTCCGGTCCAAGC
Found at i:25040064 original size:26 final size:26
Alignment explanation
Indices: 25040028--25040080 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25040018 TTGGTTCGAT
25040028 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
25040054 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25040080 C
1 C
25040081 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25040455 original size:489 final size:493
Alignment explanation
Indices: 25039537--25040625 Score: 1320
Period size: 489 Copynumber: 2.2 Consensus size: 493
25039527 ATGGCACAAA
* * * * * * *
25039537 ATCTTAGATTGAGAATGAGCTCCGTATGTTTAGACAT-GGAATTAACTCCGTATGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-TTGGGGATGAACTCCGTATGCCTAAGCCAA
* * *
25039601 CCCATGAAACGAGTGTAAGGGCGCTTAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA
65 CCCACGAAACGAGCGTAAGGGCGCTTAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA
*
25039666 ACCGGTCACCCCTGCATGCTGTCGATCCTGCTACCACAAACCTTGGTCCGGTCCAATCTTAGACT
130 ACCGGTCACCCCTGCATGCTATCGATCCTGCTACCACAAACCTTGGTCCGGTCCAATCTTAGACT
* *** *
25039731 AGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGAGCCGACCGAA
195 AGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCACTGAGCCAACCGAA
* * *
25039796 GAGGCATAATGCGCAAGACGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTACCA
260 GAGGCATAATACGCAAGACGGGGATCAACCCGGTCCCCCTCTGCATGCTGCCGGTCCCACTACCA
* * * *
25039861 CAACCCTCAGTTCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCTAACCCATGAA
325 CAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAA
* * * * * *
25039926 ACGGGTGTGTAGGCGCTCAACCGGCCAAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGAT-
390 ACGGGCGTGCAGGCGCTCAACCGACCAAAGAGGCAGAATGCACAAGCC-GAGATCGATCCCCATA
* * ** **
25039989 C-CCCT-CTG-CGTGCTACCGCAACCCTCGGTTTGGT-TCG
454 CACCCTACTGACCTGCTACCACAACCCTCAATCCGGTCT-G
*
25040026 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGCCAAC
* * * *
25040091 CCACGAAACGAGC--ACGCAGGTGCTTAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATTG
66 CCACGAAACGAGCGTAAG--GGCGCTTAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCG
* * ** * * * *
25040154 ACCCGGTCCCCCCTGTGTGCTATCGATCCTGCTACCGCAACCCTCT-TTCTGGTCCAATCTTAGA
129 AACCGGTCACCCCTGCATGCTATCGATCCTGCTACCACAAACCT-TGGTCCGGTCCAATCTTAGA
*
25040218 CTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCACTGAGCCAACCG
193 CTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCACTGAGCCAACCG
* ** * * * * *
25040283 TAGAGGCATAATACGCAAG-CTGGGGATCGGCCCGGTCTCCTTCTGCATGCTGCTGGTCTCACTG
258 AAGAGGCATAATACGCAAGAC-GGGGATCAACCCGGTCCCCCTCTGCATGCTGCCGGTCCCACTA
25040347 CCACAACCCTC-GATCCGGCTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCA
322 CCACAACCCTCAG-TCCGGCTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCA
* * * **
25040411 CGAAACGGGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCGATTTCGATCCCC
386 CGAAACGGGCGTGCAGGCGCTCAACCGACCAAAGAGGCAGAATGCACAAGCCGAGATCGATCCCC
* ** * *
25040476 CTACATGCTACTGATCCTGCTGCCATAACCCTCAATCCGGTCTG
451 ATACACCCTACTGA-CCTGCTACCACAACCCTCAATCCGGTCTG
* * *
25040520 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCCATATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
25040585 CCACAAAACGAGTGTGAGGGTGCTCAGTCGGCCGGAGAGGC
66 CCACGAAACGAGCGTAAGGGCGCTTAGCCGACCGGAGAGGC
25040626 CAACCGGAGA
Statistics
Matches: 508, Mismatches: 77, Indels: 25
0.83 0.13 0.04
Matches are distributed among these distances:
487 2 0.00
488 8 0.02
489 377 0.74
490 2 0.00
491 2 0.00
492 3 0.01
494 112 0.22
495 1 0.00
496 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (493 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTAAGGGCGCTTAGCCGACCGGAGAGGCAGAATGCGCAAGCTGGGGATCGAA
CCGGTCACCCCTGCATGCTATCGATCCTGCTACCACAAACCTTGGTCCGGTCCAATCTTAGACTA
GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCACTGAGCCAACCGAAG
AGGCATAATACGCAAGACGGGGATCAACCCGGTCCCCCTCTGCATGCTGCCGGTCCCACTACCAC
AACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAA
CGGGCGTGCAGGCGCTCAACCGACCAAAGAGGCAGAATGCACAAGCCGAGATCGATCCCCATACA
CCCTACTGACCTGCTACCACAACCCTCAATCCGGTCTG
Found at i:25040551 original size:26 final size:26
Alignment explanation
Indices: 25040522--25040574 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25040512 CCGGTCTGAT
*
25040522 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
25040548 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
25040574 C
1 C
25040575 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:25040699 original size:171 final size:172
Alignment explanation
Indices: 25040488--25040797 Score: 478
Period size: 172 Copynumber: 1.8 Consensus size: 172
25040478 ACATGCTACT
* *
25040488 GATCCTGCTGCCATAACCCTCAATCCGGTCTGATCTTAGACTAGGA-ATGAACTCCGTATGCTTA
1 GATCCTGCTGCCACAACCCTCAATCCGCTCTGATCTTAGACTAGGATATGAACTCCGTATGCTTA
* * *
25040552 GATTGGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGTGTGAGGGTGCTCAGTCGGC
66 GATTGGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGAGGGCGCTCAGTCGAC
*
25040617 CGGAGAGGCCAACCGGAGAGGAATAATGCGCAAGTCGGGTTC
131 CAGAGAGGCCAACCGGAGAGGAATAATGCGCAAGTCGGGTTC
* * * *
25040659 GATCCTGCTGCCGCAACCCTCGATCCGCTCTGATCTTAGACTGGGATTTGAACTCCGTATGCTTA
1 GATCCTGCTGCCACAACCCTCAATCCGCTCTGATCTTAGACTAGGATATGAACTCCGTATGCTTA
* ** * *
25040724 GATTGGGGATGAACTCCGTATGCCTAAGTCAAGTCACGAAACGAGCGTGCGGGCGCTCAGTCGAC
66 GATTGGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGAGGGCGCTCAGTCGAC
25040789 CAGAGAGGC
131 CAGAGAGGC
25040798 AGGATGCACA
Statistics
Matches: 123, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
171 41 0.33
172 82 0.67
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.22
Consensus pattern (172 bp):
GATCCTGCTGCCACAACCCTCAATCCGCTCTGATCTTAGACTAGGATATGAACTCCGTATGCTTA
GATTGGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGAGGGCGCTCAGTCGAC
CAGAGAGGCCAACCGGAGAGGAATAATGCGCAAGTCGGGTTC
Found at i:25041734 original size:158 final size:158
Alignment explanation
Indices: 25041440--25041900 Score: 505
Period size: 158 Copynumber: 2.9 Consensus size: 158
25041430 AGCTCCGTAT
* * * * *
25041440 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACACTCAG
* * * * * ** *
25041505 TCGACCGGAGAGGCAGAATGTGCAAGCTGGGGATCGACCCGGTCCCCCCTATGTGCTGTCGATCC
66 TCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCC
* ** *
25041570 TACTGCCGTAACCCTCGATCC-GATCCGA
131 TGCTGCCACAACCCTCGATCCAGCT-CGA
** * * * * *
25041598 TTTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCAGACACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACACTCA
* ** * *
25041662 GCCGATCAAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGAT
65 GTCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCC-CTGCGTGCTATCGAT
* *
25041727 CC-GCTGCCACAACCCTCGATCCAGCTGGG
129 CCTGCTGCCACAACCCTCGATCCAGCTCGA
* * * *
25041756 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGCCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACACTCAG
* * * * *
25041821 TCGGTCGGAGAGGCAGAATACGTAAGCCGAGGATCAGCACGGTCCCCCCTGCGTGCTATCGATCC
66 TCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCC
*
25041886 TGCTGCTACAACCCT
131 TGCTGCCACAACCCT
25041901 TGGTCTGATT
Statistics
Matches: 245, Mismatches: 53, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
157 17 0.07
158 212 0.87
159 16 0.07
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACACTCAG
TCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCC
TGCTGCCACAACCCTCGATCCAGCTCGA
Found at i:25041951 original size:26 final size:26
Alignment explanation
Indices: 25041915--25041967 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25041905 CTGATTTGAT
*
25041915 CTTAGA-TTGGGATTGAACTCCATATG
1 CTTAGACTGGGGA-TGAACTCCATATG
*
25041941 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCATATG
25041967 C
1 C
25041968 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:25044403 original size:159 final size:157
Alignment explanation
Indices: 25044120--25044525 Score: 388
Period size: 159 Copynumber: 2.6 Consensus size: 157
25044110 TTAGACATGT
* * * *
25044120 AATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGCGGGTGCTCAGTCGGTCGAAGAG
1 AATGGACT-CGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGTCGAAGAG
* * * * * * * **
25044185 GCAGAATGTGCAAGCAGGGGATCGACCCGGTTTCCCCTTGTGGGCAGTCAATCCTGCTGCCGTAA
65 GCAGAATGCGCAAGCCGGGGATCAACCCGGTTCCCCCTTGCGGGCAGCCAATCCCGCTGCCACAA
* *
25044250 CCCTCGGTCTGATCT-GATCTTAGA-CTGGG
130 CCCTCGGTCCGA-CTGGAT-TTAGACCT-AG
* * * * *
25044279 AATGGACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGATCGAAGAG
1 AATGGACTC-GTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGTCGAAGAG
* * * * **
25044344 GCATAATGCGCAAGCCGGGGATCAATCCGG-TCCCCCTATGCGTGCTGCCCGTCCCGCTGCCACA
65 GCAGAATGCGCAAGCCGGGGATCAACCCGGTTCCCCCT-TGCGGGCAGCCAATCCCGCTGCCACA
* *
25044408 ATCCTCGGTCCGACTGGGGTTTAGACCTAG
129 ACCCTCGGTCCGACT-GGATTTAGACCTAG
* * * * * *
25044438 AAT-GAGCTACCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTTAGTAGGTCGGAGA
1 AATGGA-CT-CGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGTCGAAGA
*
25044502 GGCAGAATGCGCAAGTCGGGGATC
64 GGCAGAATGCGCAAGCCGGGGATC
25044526 GGCTTAGACC
Statistics
Matches: 200, Mismatches: 40, Indels: 14
0.79 0.16 0.06
Matches are distributed among these distances:
158 11 0.05
159 184 0.92
160 5 0.03
ACGTcount: A:0.23, C:0.28, G:0.31, T:0.19
Consensus pattern (157 bp):
AATGGACTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGTCGAAGAGG
CAGAATGCGCAAGCCGGGGATCAACCCGGTTCCCCCTTGCGGGCAGCCAATCCCGCTGCCACAAC
CCTCGGTCCGACTGGATTTAGACCTAG
Found at i:25044582 original size:5 final size:5
Alignment explanation
Indices: 25044572--25044596 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
25044562 CGCAACCCTC
25044572 GATCT GATCT GATCT GATCT GATCT
1 GATCT GATCT GATCT GATCT GATCT
25044597 TAGACTGAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (5 bp):
GATCT
Found at i:25044979 original size:26 final size:26
Alignment explanation
Indices: 25044950--25045002 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25044940 CCAATCCGAT
25044950 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25044976 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25045002 C
1 C
25045003 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25045120 original size:355 final size:354
Alignment explanation
Indices: 25044268--25046496 Score: 1902
Period size: 368 Copynumber: 6.2 Consensus size: 354
25044258 CTGATCTGAT
* * * * ** * *
25044268 CTTAGACTGGGAATGGACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
* * * * ** * *
25044333 CGATCGAAGAGGCATAATGCGCAAGCCGGGGATCAATCCGGTCCCCCTATGCGTGCT---G--CC
66 CGGTCGGAGAGGCATAATGCGCAAGCTGAGGATCAGCCCGGTCCCCCTCTGCATGCTACCGATCC
* * * * * *
25044393 CG-T-CCCG--CTGC--CACAATCCTCGGTCCGACTGGGGTTTAGACCTAGAATG-AGCTAC-CT
131 CGCTGCCGGTCCTGCTGCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTA-CT-CTGT
* * * * * ** *
25044450 ATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTTAGTAGGTCGGAGAGGCAGAATGCGCA
194 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCACA
* * * * * * *
25044515 AGTCGGGGATCGGCTTAGACCCCCCTGCGCGCTGCCAATCCTGCTGCCGCAACCCTCGATCTGAT
259 AGTCGGGGATCGGCCTAGTCCCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATC----
* *
25044580 CTGATCTGATCTGATCTTAGACTGAGAATGAACTCCGTATG
320 C--A----ATCTGATCTTAGACTGGGAATGAACTCCATATG
* ** * * * * * * *
25044621 CTTAGACTAGGGACAAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATGCAGACTCTTAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
* * * * * * * * * *
25044686 CAGCCGAAAAGGCATAATGTGCAAGC-CAGGGATC-GACCTGATCCCCCTCTGCGTGCTATCGAT
66 CGGTCGGAGAGGCATAATGCGCAAGCTGA-GGATCAG-CCCGGTCCCCCTCTGCATGCTACCGAT
** * *
25044749 CCCGCTGCCGGTCCTGCTGTCTTAACCCTCGATCCGACTGGGGCTTAGATGTGGAATGTACTCTG
129 CCCGCTGCCGGTCCTGCTG-CACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCTG
** ** *
25044814 TATGCCTAAGCCAACCCACGAAACGAGCGCACGGGCGCTCAGTCGACCGGAGAGATAGAATGCGC
193 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCAC
* * *
25044879 AAGTCGAGGATCGGCCTAGTCCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCCAA
258 AAGTCGGGGATCGGCCTAGTCCCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCAA
*
25044944 TCCGATCTTAGACTGGGAATGAACTCCATATG
323 TCTGATCTTAGACTGGGAATGAACTCCATATG
25044976 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
25045041 CGGTCGGAGAGGCATAATGCGCAAGCTGAGGATCAGCCCGGTCCCCCTCTGCATGCTACCGATCC
66 CGGTCGGAGAGGCATAATGCGCAAGCTGAGGATCAGCCCGGTCCCCCTCTGCATGCTACCGATCC
* *
25045106 CGCTGCCAGTCCTGCTGGCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTAC-GT
131 CGCTGCCGGTCCTGCT-GCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACT-CTGT
* * * * * * * *
25045170 ATGCCTAAGCGAACCCATGAAATGATCGTGCGGGTGCTCAGCCGACCGGAGAGGAAGAATGCGCA
194 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCACA
* * * * * * *
25045235 AGTCGGGAATTGGCC-CGATCCCCCCTGCGTGCTACCAATCCTACTACTGCAACCCTTGATCCGA
259 AGTCGGGGATCGGCCTAG-TCCCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCAA
* *
25045299 TCGGATCTTAGACTTGGAATGAACTCCATATG
323 TCTGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
25045331 CTTAGACTGGGGATGAATTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCA--
* * ** * *
25045396 CGGTCGAAGAGGTCGATCGAAGAGGCGTAAAGCGCAAG-TCGAGGATCAGCTTGGTCCCCTTCTA
64 --GTC-----GGTCG---G-AGAGGCATAATGCGCAAGCT-GAGGATCAGCCCGGTCCCCCTCTG
* * * * *
25045460 CATGCTGCCGATCCCGCTGTCGATCCTGCTGCCACAACCCTCGGTTCGACTGGGGCTT-GACGAG
117 CATGCTACCGATCCCGCTGCCGGTCCTGCTG-CACAACCCTCGGTCCGACTGGGGCTTAGACGTG
* * ** * * *
25045524 GAATGTACTCTGAATGCTTAAGCCAACCCATAAAACGAACGTGCGGGCGCTCAG-C-ATGTCAGA
181 GAATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGA--CCGGA
* * ** ** * **
25045587 AAGGCAGAATGCACAAGTTGGGGATCTACCCGGT-CCCCCTGCATGCTGTCGATCCTACTACCGC
244 GAGGCAGAATGCACAAGTCGGGGATCGGCCTAGTCCCCCCTGCGTGCTACCGATCCTACTACCGC
** * **
25045651 AACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCTGTATG
309 AACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCATATG
* * ** * *
25045697 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATTAGTGTGTGGGCATTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGG----C-GC
* * * * * * *
25045762 TAGCGGGAGAGGTCGGCCGGAGAGGCATAATGCGTAAACTGAAGATCAACTCGGTCCCTCTCTGC
61 T--C-----A-GTCGGTCGGAGAGGCATAATGCGCAAGCTGAGGATCAGCCCGGTCCCCCTCTGC
** * * * * * *
25045827 ATGCTGTCAATCTCGCTGCTGGTCCTGCTGCTACAACCCTCGGTCTGACTGGGGGTTAGATGTGG
118 ATGCTACCGATCCCGCTGCCGGTCCTGCTGC-ACAACCCTCGGTCCGACTGGGGCTTAGACGTGG
* * ** * *
25045892 AATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAACCGATCAGAGAG
182 AATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAG
* * * ** * * *
25045957 GCAGAATGCATAAGCCGGGGATCAG-CTCAGTCTTCCATGCGTGCTACCGATCCTACTATCACAA
247 GCAGAATGCACAAGTCGGGGATCGGCCT-AGTCCCCCCTGCGTGCTACCGATCCTACTACCGCAA
* *
25046021 CCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCTGA-ATG
311 CCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTC-CATATG
* * *
25046065 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACAAGCATGCGAGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCT----
** * * * *
25046130 CAGTCAGAGAGGTCGACTGGAGAGGCATAATATGTAAGCCGAAGATCAGCCCGATCCCCCTCTGC
62 CAGTC-----GGT---C-GGAGAGGCATAATGCGCAAGCTGAGGATCAGCCCGGTCCCCCTCTGC
* * * * * * *
25046195 GTGCTACCGATCCCGCTGTCGGTCTTGTTGCCACAACCCTCGGTCTGACTGGGGCTTATATGTGG
118 ATGCTACCGATCCCGCTGCCGGTCCTGCTG-CACAACCCTCGGTCCGACTGGGGCTTAGACGTGG
*
25046260 AATGTACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGACCGGAGAG
182 AATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAG
* * * * ** * *
25046325 GTAGAATGCACAAG-CTAGGAATCAGCCGGGTCCCTCCTGCGTGCTACTGATCCTACTACCGCAA
247 GCAGAATGCACAAGTC-GGGGATCGGCCTAGTCCCCCCTGCGTGCTACCGATCCTACTACCGCAA
*** *
25046389 CCCTCGATCTGGTCTGATCTTAAACTGGGAATGAACTCCATATG
311 CCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCATATG
*
25046433 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC--AACATGAGCGTGCGGGCGCTCA
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACA--AGCGTGCGGGCGCTCA
25046496 G
64 G
25046497 CCTCCAGAGA
Statistics
Matches: 1531, Mismatches: 268, Indels: 143
0.79 0.14 0.07
Matches are distributed among these distances:
353 93 0.06
354 1 0.00
355 385 0.25
356 5 0.00
358 4 0.00
359 8 0.01
360 4 0.00
361 1 0.00
362 4 0.00
363 3 0.00
364 12 0.01
365 145 0.09
366 202 0.13
367 162 0.11
368 485 0.32
369 3 0.00
370 5 0.00
371 3 0.00
373 1 0.00
375 4 0.00
378 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (354 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
CGGTCGGAGAGGCATAATGCGCAAGCTGAGGATCAGCCCGGTCCCCCTCTGCATGCTACCGATCC
CGCTGCCGGTCCTGCTGCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCTGTAT
GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCACAAG
TCGGGGATCGGCCTAGTCCCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCAATCT
GATCTTAGACTGGGAATGAACTCCATATG
Found at i:25045700 original size:26 final size:26
Alignment explanation
Indices: 25045671--25045723 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25045661 CCGGTCTGAT
*
25045671 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
25045697 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
25045723 C
1 C
25045724 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:25047035 original size:26 final size:26
Alignment explanation
Indices: 25046991--25047043 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25046981 CCGGTTCGAT
*
25046991 CTTAGACTGGCAATGAACTCCATATG
1 CTTAGACTGGCAATAAACTCCATATG
** *
25047017 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGCAATAAACTCCATATG
25047043 C
1 C
25047044 CTAAGTCACC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATAAACTCCATATG
Found at i:25047386 original size:585 final size:585
Alignment explanation
Indices: 25046276--25047448 Score: 1811
Period size: 585 Copynumber: 2.0 Consensus size: 585
25046266 CTCTGTATGC
* * * *
25046276 CTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGTAGAATGCACAAGCT
1 CTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCACAAGCG
* * * * *
25046341 AGGAATCAGCCGGGTCCCTCCTGCGTGCTACTGATCCTACTACCGCAACCCTCGATCTGGTCTGA
66 AGGAATCAGCCCGATCCCTCCTGCGTACTACTGATCCTACTACCACAACCCTCGATCCGGTCTGA
* * *
25046406 TCTTAAACTGGGAATGAACTCCATATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACC
131 TCTTAAACTGGCAATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACC
* * *
25046471 CACAACATGAGCGTGCGGGCGCTCAGCCTCCAGAGAGGCAGGATGCGTAAGCCGGGGATCGAACG
196 CACAACACGAGCGTGCGGGCGCTCAGCCACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAACG
* * * *
25046536 AGTGGTAGGTGGGTTCGATCACATCTGCATATTTTTACTGTGCCAATGCCATTTTTATGGCTTGT
261 AGTGGTAGGTGGGTTCAAGCACATCTGCATATTTCTACCGTGCCAATGCCATTTTTATGGCTTGT
25046601 AAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTAT
326 AAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTAT
** * *
25046666 TTTTCATGATTTTTGAAACTTTTTGCTGTTCGGCATTTTTTTAAATTTTTTTAGAAAGAGTTCTG
391 TTTTCATGATTTTTGAAACTTTTTGCTGTTAAGCATTTTTTAAAATTTTTCTAGAAAGAGTTCTG
* *
25046731 TCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTGTTGGCAAGCACAAAAAAAATGAGCTAAAA
456 TCCCCAAATTTGGTAGAGATGATCCTTGTATTTTTGTTGGCAAGCACAAAAAAAATAAGCTAAAA
*
25046796 ACTCAAAGTGGAGAAGATTTTGTGATCGTTT-AAAAAAGGTGTCCCCATTTCAGACACTTTAATG
521 ACTCAAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAA-GTGTCCCCATTTCAGACACTTTAATG
25046860 G
585 G
* * **
25046861 CTAAGCCAACCCACGAAACGAACGTGCGGGCGCTTAGCCGGCCGGAGAGGTAGAATGTGCAAGCC
1 CTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCACAAG-C
* * * * *
25046926 GAGG-ATCGGCCCGATCCC-CCTGTGTACT-GTCGATCCTGCTGCCACAACCCTCGATCCGGT-T
65 GAGGAATCAGCCCGATCCCTCCTGCGTACTACT-GATCCTACTACCACAACCCTCGATCCGGTCT
*
25046987 CGATCTTAGACTGGCAATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCA
129 -GATCTTAAACTGGCAATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCA
* *
25047052 CCCCACGAA-ACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGATT
193 ACCCAC-AACACGAGCGTGCGGGCGCTCAGCC-ACCAGAGAGGCAGGATGCGCAAGCCGGGGATC
* * * *
25047116 GAATGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTATGG
256 GAACGAGTGGTAGGTGGGTTCAAGCACATCTGCATATTTCTACCGTGCCAATGCCATTTTTATGG
* *
25047181 CTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAGGTTTCGTGGCAAGATGACCCGTTT
321 CTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTT
*
25047246 TTTATTTTTCATGATTTTTGAAACTTTTTGCTGTTTAAG-ATTTTTTAAAATTTTTCTAGAAAGA
386 TCTATTTTTCATGATTTTTGAAACTTTTTGCTG-TTAAGCATTTTTTAAAATTTTTCTAGAAAGA
* *
25047310 GTTCTGTCCCCAAATTTGGTAGAGATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAG
450 GTTCTGTCCCCAAATTTGGTAGAGATGATCCTTGTATTTTTGTTGGCAAGCACAAAAAAAATAAG
25047375 CTAAAAACTCAAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTT
515 CTAAAAACTCAAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTT
25047440 TAATGG
580 TAATGG
25047446 CTA
1 CTA
25047449 CTGGCAGCAA
Statistics
Matches: 534, Mismatches: 47, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
583 2 0.00
584 119 0.22
585 400 0.75
586 13 0.02
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (585 bp):
CTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCACAAGCG
AGGAATCAGCCCGATCCCTCCTGCGTACTACTGATCCTACTACCACAACCCTCGATCCGGTCTGA
TCTTAAACTGGCAATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACC
CACAACACGAGCGTGCGGGCGCTCAGCCACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGAACG
AGTGGTAGGTGGGTTCAAGCACATCTGCATATTTCTACCGTGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTAT
TTTTCATGATTTTTGAAACTTTTTGCTGTTAAGCATTTTTTAAAATTTTTCTAGAAAGAGTTCTG
TCCCCAAATTTGGTAGAGATGATCCTTGTATTTTTGTTGGCAAGCACAAAAAAAATAAGCTAAAA
ACTCAAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
Found at i:25047641 original size:11 final size:11
Alignment explanation
Indices: 25047622--25047654 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
25047612 CTGTTAGGCT
*
25047622 CTCCTACGATG
1 CTCCGACGATG
25047633 CTCCGACGATG
1 CTCCGACGATG
25047644 CTCCGACGATG
1 CTCCGACGATG
25047655 GTGCCCCGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.36, G:0.24, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:25048152 original size:159 final size:159
Alignment explanation
Indices: 25047749--25048165 Score: 412
Period size: 159 Copynumber: 2.6 Consensus size: 159
25047739 AGCTCCGTAT
* * * * *
25047749 GCTTAGACATGTAATTAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGTGTGCGGGCGCTCAG
* * * * *
25047814 CCGGCTGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCCAATCCCCTCCTGTGTGCTATCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCTCCTGTGTGCGACCGATC
*
25047879 CTACTACCACAACCCTCGATCCAATTTGA
131 CTACTACCACAACCCTCGATCCAATTGGA
* * * * * * *
25047908 TCTTAGAC-TGGAAATGAACTTCGTATGCATAAGTTAACCCATGAAATGAGTGTACGGGCACTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGTGTGCGGGCGCTCA
* * * * * * * *
25047972 GCCGGTCGAAGGGGCATAATGCGCAAGCCGTGGATCGGCCCGATCCCC-CTCTGTGTGCGACCGG
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCTC-CTGTGTGCGACCGA
* * * ** *
25048036 T-CTCGCTGCCACAACCCTCGGTCCGGTTGGG
129 TCCT-ACTACCACAACCCTCGATCCAATTGGA
* * * *
25048067 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCTAACCCACGAAAT-AGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATGA-GTGTGCGGGCGCTCA
* * *
25048131 ACCGACCGGAGAGGCAGAATGCTCAA-CCGGGGATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC
25048166 AACTCAGTCC
Statistics
Matches: 203, Mismatches: 50, Indels: 11
0.77 0.19 0.04
Matches are distributed among these distances:
158 14 0.07
159 186 0.92
160 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGTGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCTCCTGTGTGCGACCGATC
CTACTACCACAACCCTCGATCCAATTGGA
Found at i:25048642 original size:26 final size:26
Alignment explanation
Indices: 25048586--25048645 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
25048576 GATCTTAGGC
*
25048586 TGGGAATGAACTCCGTAGGCTTACAA
1 TGGGGATGAACTCCGTAGGCTTACAA
25048612 TGGGGATGAACTCCGTAGGCTTACAA
1 TGGGGATGAACTCCGTAGGCTTACAA
25048638 TGGGGATG
1 TGGGGATG
25048646 CCTACGTCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.27, C:0.17, G:0.33, T:0.23
Consensus pattern (26 bp):
TGGGGATGAACTCCGTAGGCTTACAA
Found at i:25048798 original size:198 final size:199
Alignment explanation
Indices: 25048444--25048826 Score: 495
Period size: 198 Copynumber: 1.9 Consensus size: 199
25048434 TGTACTCCGT
**
25048444 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACCGAAGAGGCAGAATGTGCA
1 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACCGAAGAGGCAGAATGCACA
* * *
25048509 AGTTGGGGATCAGCCCTGTCCCCCCTGCGTGCTGTCGATCCTGCTGCTGCAACCTTCAATCCAGT
66 AGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCTGCAACCTTCAATCCAGT
* * * *
25048574 CTGATCTTAGGCTGGGAATGAACTCCGTAGGCTTACAATGGGGATGAACTCCGTAGGCTTACAAT
131 CTGATCTTAGACTAGGAATAAACTCCGTAGGCTTACAATGGAGATGAACTCCGTAGGCTTACAAT
25048639 GGGG
196 GGGG
* * * * * ** *
25048643 ATGCCTACGTCAACCCATGAAATGAGCGTGCGGGCGCTC-AGCGGTCGGAGAGGCAGAATGCACA
1 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACCGAAGAGGCAGAATGCACA
* * * *
25048707 AGTCGGGGATC-GACCCGGTCCCCCCTGTGTGCTGCCGATCCTGCT-ATCGCAACCCTT-GATCT
66 AGTCGGGGATCAG-CCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCT-GCAA-CCTTCAATCC
* * *
25048769 AGTCTGATCTTAGACTAGGAATAAACTCCGTATGCTTAGACTGGAGATGAACTCCGTA
128 AGTCTGATCTTAGACTAGGAATAAACTCCGTAGGCTTACAATGGAGATGAACTCCGTA
25048827 TGCCTAAGTC
Statistics
Matches: 157, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
197 2 0.01
198 116 0.74
199 39 0.25
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (199 bp):
ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACCGACCGAAGAGGCAGAATGCACA
AGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCTGCAACCTTCAATCCAGT
CTGATCTTAGACTAGGAATAAACTCCGTAGGCTTACAATGGAGATGAACTCCGTAGGCTTACAAT
GGGG
Found at i:25048821 original size:26 final size:26
Alignment explanation
Indices: 25048777--25048829 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25048767 CTAGTCTGAT
25048777 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
*
25048803 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTAGGA-ATAAACTCCGTATG
25048829 C
1 C
25048830 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:25049538 original size:26 final size:26
Alignment explanation
Indices: 25049498--25049550 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25049488 GGATAAAAAT
*
25049498 CTTAGACTGGAAATGAGCTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
25049524 CTTAGACATGG-AATGAACTCTGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
25049550 C
1 C
25049551 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:25049938 original size:159 final size:158
Alignment explanation
Indices: 25049523--25049938 Score: 494
Period size: 159 Copynumber: 2.6 Consensus size: 158
25049513 AGCTCCGTAT
* * *
25049523 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCTCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* ** *
25049588 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAACCTGATCCCTCTTGCGTGCTGTCGATCC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCAACCCAATCCCTCTTGCATGCTGTCGATCC
25049653 CGCTACCACAAACCTTGGTCCGGTCCGA
131 CGCTACCACAAACCTTGGTCCGGTCCGA
* * * * *
25049681 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* ** * **
25049745 GCCGGTCGAAGAGGCATAATATGCAAGCCAGGGATCGGCCCAATCTCC-CTCTGCATGCTGTCGA
65 GCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCAACCCAATC-CCTCT-TGCATGCTGTCGA
* * * ** *
25049809 TCCCGTTGCCACAACCCTTGGTCCGGTTGGG
128 TCCCGCTACCACAAACCTTGGTCCGGTCCGA
* ** * *
25049840 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
** * *
25049905 CCAATCGGAGAGGCAGAATGCGCAAGCTGGGGAT
66 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGAT
25049939 TGGCTCGGTC
Statistics
Matches: 212, Mismatches: 42, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.00
158 92 0.43
159 118 0.56
160 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCAACCCAATCCCTCTTGCATGCTGTCGATCC
CGCTACCACAAACCTTGGTCCGGTCCGA
Found at i:25050028 original size:26 final size:26
Alignment explanation
Indices: 25049999--25050051 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25049989 CCGGTTCGTT
25049999 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
25050025 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25050051 C
1 C
25050052 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25050417 original size:24 final size:26
Alignment explanation
Indices: 25050367--25050417 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
25050357 CCAGTCCGAT
* *
25050367 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
25050393 CTTAGACTGGGGATG-A-TCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
25050417 C
1 C
25050418 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 8 0.36
25 1 0.05
26 13 0.59
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:25051115 original size:26 final size:26
Alignment explanation
Indices: 25051075--25051127 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25051065 GGATAAAAAT
*
25051075 CTTAGACTGGCAATGAGCTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
25051101 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGCAATGAACTCCGTATG
25051127 C
1 C
25051128 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:25051605 original size:26 final size:26
Alignment explanation
Indices: 25051576--25051628 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25051566 CCGATCCGAT
25051576 CTTAGACCAG-GAATGAACTCCGTATG
1 CTTAGA-CAGTGAATGAACTCCGTATG
* *
25051602 CTTAGACTGTGGATGAACTCCGTATG
1 CTTAGACAGTGAATGAACTCCGTATG
25051628 C
1 C
25051629 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGTGAATGAACTCCGTATG
Found at i:25052326 original size:26 final size:26
Alignment explanation
Indices: 25052297--25052349 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25052287 GGCTCAAAAT
*
25052297 CTTAGAC-TAGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
25052323 CTTATACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25052349 C
1 C
25052350 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25052669 original size:26 final size:26
Alignment explanation
Indices: 25052633--25052685 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25052623 CCGGTCTGAT
*
25052633 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
25052659 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
25052685 C
1 C
25052686 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:25053150 original size:26 final size:26
Alignment explanation
Indices: 25053121--25053171 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25053111 GGTCTAATCC
*
25053121 TAGATTGGGAATGAAC-TCTGTATGCT
1 TAGACTGGGAATGAACTTC-GTATGCT
*
25053147 TAGACTGGGGATGAACTTCGTATGC
1 TAGACTGGGAATGAACTTCGTATGC
25053172 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTTCGTATGCT
Found at i:25053503 original size:26 final size:26
Alignment explanation
Indices: 25053474--25053552 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
25053464 CCGATCCGAT
*
25053474 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25053500 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25053526 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25053552 C
1 C
25053553 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25054250 original size:26 final size:26
Alignment explanation
Indices: 25054221--25054271 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25054211 GGCTCAAAAT
*
25054221 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
25054247 CTTAGACATGGAATGAATTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
25054272 TCCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25054602 original size:159 final size:158
Alignment explanation
Indices: 25054326--25054708 Score: 387
Period size: 159 Copynumber: 2.4 Consensus size: 158
25054316 TGGAGAGGTT
* ** * **
25054326 GAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTGTCGATCCTACTACCGTAACCCT
1 GAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCT
* * * * *
25054391 CGATCTGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAAAGAGCG
66 CGATCTCGACTGAGCTTAGACTAGGAATGAACTCCCTATGCATAAGTCAACCCACGAAAAGAGCG
25054456 TGCAGGCACTGA-TCTAGCCGAAAAGGCA
131 TGCAGGCACTGAGTC-AGCCGAAAAGGCA
* * * * *
25054484 TAATGCGCAAGCCAGGGATCGGCCCGGTCCACCTCTACGTGCTGTCGGTCCTGCTGCCACAACCC
1 GAATGCGCAAGCCAGGGATCGACCCGGTCC-CCCCTACGTGCTGTCGATCCTGCTACCACAACCC
* * * * *
25054549 TCGATC-CGACTGGGGCTTAGAC-ATGGAATGAGCTCCCTATGCCTAAG-CTAACCCATGAAACG
65 TCGATCTCGACT-GAGCTTAGACTA-GGAATGAACTCCCTATGCATAAGTC-AACCCACGAAAAG
* * * * * * *
25054611 GGCGTGCAGGCGCTTAGTCGGTCGGAGAGGCA
127 AGCGTGCAGGCACTGAGTCAGCCGAAAAGGCA
* * * * * *
25054643 GATTGCGTAAGCCCGGGATCGACTCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCGCGACCCT
1 GAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCT
25054708 C
66 C
25054709 AGTCCGGTCC
Statistics
Matches: 181, Mismatches: 39, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
158 63 0.35
159 116 0.64
160 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
GAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCT
CGATCTCGACTGAGCTTAGACTAGGAATGAACTCCCTATGCATAAGTCAACCCACGAAAAGAGCG
TGCAGGCACTGAGTCAGCCGAAAAGGCA
Found at i:25054748 original size:158 final size:157
Alignment explanation
Indices: 25054247--25054748 Score: 454
Period size: 158 Copynumber: 3.2 Consensus size: 157
25054237 GCTCCGTATG
* * * ** *
25054247 CTTAGACATGGAATGAATTCCGTATTCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCAGGCGCTCAGT
* * ** * **
25054312 CGATTGGAGAGGTTGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTGTCGATCCT
65 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCT
* * * *
25054377 ACTACCGTAACCCTCGATCTGGTCTGAT
130 GCTACCGCAACCCTCGATCCGGTCCGAT
* * * * * * *
25054405 CTTAGACTAGGAATGAACTTCGTATGCATAAG-TCAACCCACGAAAAGAGCGTGCAGGCACTGA-
1 CTTAGAAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCATGAAACGAGCGTGCAGGCGCTCAG
* * * * * * * *
25054468 TCTAGCCGAAAAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCACCTCTACGTGCTGTCGGT
64 TC-GGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCC-CCCCTACGTGCTGTCGAT
* * * * **
25054533 CCTGCTGCCACAACCCTCGATCC-GACTGGGG
127 CCTGCTACCGCAACCCTCGATCCGGTC-CGAT
* * * *
25054564 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCAGGCGCTTAGT
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCAGGCGCTCAGT
* * * *
25054629 CGGTCGGAGAGGCAGATTGCGTAAGCCCGGGATCGACTCGGTCCCCCCTACGTGCTGTCGATCCT
65 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCT
*
25054694 GCTACCGCGACCCTC-AGTCCGGTCCGAT
130 GCTACCGCAACCCTCGA-TCCGGTCCGAT
* *
25054722 CTTAGATTGGGAATGAACTCAGTATGC
1 CTTAGAAT-GGAATGAACTCCGTATGC
25054749 TTCGAGTGGG
Statistics
Matches: 263, Mismatches: 70, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
157 4 0.02
158 138 0.52
159 117 0.44
160 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGAATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCAGGCGCTCAGTC
GGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTG
CTACCGCAACCCTCGATCCGGTCCGAT
Found at i:25055076 original size:355 final size:355
Alignment explanation
Indices: 25054558--25055200 Score: 887
Period size: 355 Copynumber: 1.8 Consensus size: 355
25054548 CTCGATCCGA
* * **
25054558 CTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCAGGCG
1 CTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCG
* * * * * * *
25054623 CTTAGTCGGTCGGAGAGGCAGATTGCGTAAGCCCGGGATCGACTCGGTCCCCCCTACGTGCTGTC
66 CTCAGCCGGCCGGAGAGGCAGAGTGCGCAAGCCCGGGATCGACTCGGTCCCACCTACGTGCCGTC
* * * * *
25054688 GATCCTGCTACCGCGACCCTCAGTCCGGTCCGATCTTAGATTGGGAATGAACTCAGTATGCTTCG
131 GATCCTGCTACCGCAACCCTCAGTCCCGTCCGATCTTAGACTGGCAATGAACTCAGTATGCTTAG
* * * *
25054753 AGTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCTGGCC
196 ACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGACC
*
25054818 AGAGAGGCATAATGCGCAAGCCGAGGATTAGCCCGGTCCCCCTCTGCGTGCTGTCTATCCCGCTG
261 AGAGAGGCAGAATGCGCAAGCCGAGGATTAGCCCGGTCCCCCTCTGCGTGCTGTCTATCCCGCTG
25054883 CCGGTCCTACTACTACAACACTCGGTTCAG
326 CCGGTCCTACTACTACAACACTCGGTTCAG
** * * *
25054913 CTGGGGCTTAGACATGGAATGTA-CTCTGTATGCGTAAGCCAACCCACGAAACAAGTGTGCAGGT
1 CTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGC
* * * * *
25054977 GCTCAGCCGGCCGGAGAGGCAGAGTGTGCAAGCCGGGGATC-AGCTTGGTCCTACTTACGTGCCG
65 GCTCAGCCGGCCGGAGAGGCAGAGTGCGCAAGCCCGGGATCGA-CTCGGTCCCACCTACGTGCCG
*** * *
25055041 TCGATCCTGCTGTTGCAACCCTCCA-TCCCGTCCGATCTTAGACTGGCAATGAACTCCGTATGTT
129 TCGATCCTGCTACCGCAACCCT-CAGTCCCGTCCGATCTTAGACTGGCAATGAACTCAGTATGCT
*
25055105 TAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTG
193 TAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTG
* *
25055170 ACCAGAGAGGCAGGATGCGCAAGCCGGGGAT
258 ACCAGAGAGGCAGAATGCGCAAGCCGAGGAT
25055201 CGAACGGGTG
Statistics
Matches: 246, Mismatches: 39, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
354 1 0.00
355 242 0.98
356 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (355 bp):
CTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCG
CTCAGCCGGCCGGAGAGGCAGAGTGCGCAAGCCCGGGATCGACTCGGTCCCACCTACGTGCCGTC
GATCCTGCTACCGCAACCCTCAGTCCCGTCCGATCTTAGACTGGCAATGAACTCAGTATGCTTAG
ACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGACC
AGAGAGGCAGAATGCGCAAGCCGAGGATTAGCCCGGTCCCCCTCTGCGTGCTGTCTATCCCGCTG
CCGGTCCTACTACTACAACACTCGGTTCAG
Found at i:25055107 original size:26 final size:26
Alignment explanation
Indices: 25055078--25055128 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25055068 CCGTCCGATC
25055078 TTAGACT-GGCAATGAACTCCGTATGT
1 TTAGACTAGG-AATGAACTCCGTATGT
* *
25055104 TTAGACTAGGGATGAACTCTGTATG
1 TTAGACTAGGAATGAACTCCGTATG
25055129 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGT
Found at i:25056297 original size:26 final size:26
Alignment explanation
Indices: 25056268--25056320 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25056258 CCGATCCGAT
*
25056268 CTTAGAC-GAGGAATGAATTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
*
25056294 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25056320 C
1 C
25056321 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25057364 original size:26 final size:26
Alignment explanation
Indices: 25057335--25057387 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25057325 GGCTCAAAAT
*
25057335 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25057361 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25057387 C
1 C
25057388 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25057877 original size:26 final size:26
Alignment explanation
Indices: 25057834--25057886 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25057824 CCAATCTGAT
25057834 CTTAGACTAGGAAAGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
*
25057860 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTAGGA-AAGAACTCCGTATG
25057886 C
1 C
25057887 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:25058988 original size:26 final size:26
Alignment explanation
Indices: 25058950--25059001 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25058940 GGCTCAAAAT
25058950 CTTAGACTGGGAATGAGA-TCCGTATG
1 CTTAGACTGGGAATGA-ACTCCGTATG
25058976 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25059002 AATAAGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.92
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25059276 original size:158 final size:158
Alignment explanation
Indices: 25058975--25059602 Score: 524
Period size: 159 Copynumber: 4.0 Consensus size: 158
25058965 AGATCCGTAT
* * * * *
25058975 GCTTAGACATGGAATGAACTCCGTATGAATAAGTCAACCCACGAAACGAGCGTGAGGGTAG-TGA
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGTCAACCCACGAAACGAGCGTGCGGG-CGCTCA
* * * * * * * * * * * *
25059039 G-TG-GCTGAGGAGGCATAACGCGCAAGTCGGGGATCGGCCCGGTCTCCCTCTGTGTACTGTCGG
65 GCCGATCGGA-GAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCTCCCCCTGCGTGCTGTCGA
*
25059102 TCTTGCTGCCACAACCCTCGGTCCGGCTAGG
129 TCCTGCTGCCACAACCCTCGGTCCGGCT-GG
* *
25059133 GCTTAGACATGGAATGATCTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
25059198 CCGATCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGATC-CCCCCTGCATGCTGTCGATC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCTCCCCCTGCGTGCTGTCGATC
** ** * * * *
25059262 CTGCTATCGTAACCCTTGATCTCGTCTGA
131 CTGCTGCCACAACCCTCGGTC-CGGCTGG
* * *
25059291 TCTTAGAC-TGGGAATGAACTCCCGTATGCATAAGTCAACCCAAGAAACGAGCGTGCAGGCATTG
1 GCTTAGACAT-GGAATGAACTCCC-TATGCATAAGTCAACCCACGAAACGAGCGTGCGGGC---G
* * * * * * * *
25059355 ATCTAGCCGA----AGAGGGATAATGCGTAAGCCGGGGATCGACCCGGTCTACCTCAGCGTGCTG
61 CTC-AGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCTCCCCCTGCGTGCTG
* * * *
25059416 T-AAGTCCCGCTGCCACAAGCCTCGGTCCAGCTGGG
125 TCGA-TCCTGCTGCCACAACCCTCGGTCCGGCT-GG
* * * * *
25059451 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
25059516 CCGGTCGGAGAGGTAGAATGCGTAAGCCGGAGATCCG-CCCGATC-CCCCCTGCGTGGTGTCGAT
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGAT-CGACCCGATCTCCCCCTGCGTGCTGTCGAT
* * *
25059579 CCTGTTGCCGCAACCCTCAGTCCG
130 CCTGCTGCCACAACCCTCGGTCCG
25059603 ATCTGATCTT
Statistics
Matches: 369, Mismatches: 81, Indels: 40
0.75 0.17 0.08
Matches are distributed among these distances:
155 5 0.01
156 3 0.01
157 2 0.01
158 135 0.37
159 163 0.44
160 51 0.14
161 1 0.00
162 3 0.01
163 6 0.02
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCTCCCCCTGCGTGCTGTCGATC
CTGCTGCCACAACCCTCGGTCCGGCTGG
Found at i:25059639 original size:26 final size:26
Alignment explanation
Indices: 25059610--25059662 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25059600 CCGATCTGAT
25059610 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
25059636 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
25059662 C
1 C
25059663 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:25061026 original size:159 final size:159
Alignment explanation
Indices: 25060724--25061089 Score: 425
Period size: 159 Copynumber: 2.3 Consensus size: 159
25060714 AGCTCCATAT
* * * *
25060724 GCTTAGACATGGAACGAACTCCAAATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCACTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAACGTGCAGGCACTGAG
* *
25060789 CCAGCCGAAAAGGTAGAATGCGCAAGCCGAGGATCGACCCGGTTCCCCCTTACGTGCTGTCGATC
66 CCAGCCGAAAAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTTCCCCCTTACGTGCTGTCGATC
* ** * *
25060854 CTGCTACTGCAACCCTCGGTCC-GATCCGA
131 CCGCTACCACAACCCTCAGTCCGGCT-CGA
* * * * * *
25060883 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAACGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAACGTGCAGGCACTGA
* * * * *
25060947 G-CAGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCAGTT-CCCCTCTGCGTGCTGTCG
65 GCCA-GCCGAAAAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTTCCCCCT-TACGTGCTGTCG
* * *
25061010 GTCCCGCTGCCACAACCCTCAGTCCGGCTGGA
128 ATCCCGCTACCACAACCCTCAGTCCGGCTCGA
* *
25061042 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATG
25061090 GGAGAGCCAG
Statistics
Matches: 172, Mismatches: 30, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
158 8 0.05
159 161 0.94
160 3 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAACGTGCAGGCACTGAG
CCAGCCGAAAAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTTCCCCCTTACGTGCTGTCGATC
CCGCTACCACAACCCTCAGTCCGGCTCGA
Found at i:25061213 original size:133 final size:136
Alignment explanation
Indices: 25060964--25061220 Score: 344
Period size: 133 Copynumber: 1.9 Consensus size: 136
25060954 GAAGAGGCAT
* * *
25060964 AATGCGCAAGCCGGGGATCGGCCCAGTTCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCT
1 AATGCGCAAGCCGGGGATCGGACCAGGTCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCT
* *
25061029 CAGTCCGGCTGGAGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGAG
66 CAGTCCGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAATGGGAG
25061094 AGCCAG
131 AGCCAG
* * * *
25061100 AATGCGCAAGCCGGGGATTGGACC-GGT-CCC-CTGCGTGCTGTCGATCCTGCTGTCGCAACCCT
1 AATGCGCAAGCCGGGGATCGGACCAGGTCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCT
* * * *
25061162 CAGTCCGGTCT-GATCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAA
66 CAGTCCGG-CTGGAGCTTAGACAT-GGAATGAACTCCCTATGCATAAGCCAACCCACGAAA
25061221 CAAGCGTGCG
Statistics
Matches: 106, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
132 1 0.01
133 76 0.72
134 5 0.05
135 2 0.02
136 22 0.21
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (136 bp):
AATGCGCAAGCCGGGGATCGGACCAGGTCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCT
CAGTCCGGCTGGAGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAATGGGAG
AGCCAG
Found at i:25063732 original size:355 final size:353
Alignment explanation
Indices: 25063224--25064203 Score: 1070
Period size: 355 Copynumber: 2.8 Consensus size: 353
25063214 GGTCCCGTTT
* * *
25063224 CCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAG-CAGACCC
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCA-ACCC
* * ** * * *
25063287 ACGAAACG-GATGTACGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGTAAGTCGAGGATCAACC
64 ATGAAACGAG-TGTACGGGCGCTCAGTC-GCTGGAGAGGCAGAATGCGTAAGCCG-GGATCAGCT
* * * * * * *
25063351 CAGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACTCTC-AGGCCGGTCTGATCTCAGACTG
126 CGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGA-TCTGGTCTGATCTTAGACTG
** *
25063415 GGAAACAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGA
190 GGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * *
25063480 GCGTGCGGGCACTCAGCCGGTCGGAGAGGCATAATATGCAAGCCAGGGATCAGCTCGATCCCTCT
255 GCGTGCGGGCACTCAGCCGATCGGAGAGGCATAATACGCAAGCCAGGGATCAGCCCGATCCCCCT
** * * *
25063545 CAACGTGCTGCCGATCCCGTTGCCGGTCCTGCTG
320 CAACGTGCTGCCGATCCCACTACCGGTCCTACTA
* *
25063579 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCGTATTCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCAT
* * *
25063644 GAAACGAGCGTGCGGGCGCTCAGTCGACTGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCTCGG
66 GAAACGAGTGTACGGGCGCTCAGTCG-CTGGAGAGGCAGAATGCGTAAGCC-GGGATCAGCTCGG
* * * * *
25063709 TCCCCCCTGTGTGCTGCCGATCCTGCTGCCACAACCCTCGATCTAGTCTGATATTAGACTAGGAA
129 TCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAA
* * * * *
25063774 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTA---C--AGGC-GCTCA-G---CTA--GT
194 TGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * *** * **
25063827 -CGGAG-A---GGTCGATCGGAGAGGCATAATACGCAAGTTGGGGATCAGCCCGGTCCCCCTTTA
259 GCGG-GCACTCAGCCGATCGGAGAGGCATAATACGCAAGCCAGGGATCAGCCCGATCCCCCTCAA
* * *
25063887 TGTGCTGTCGATCCCACTATCGGTCCTACTA
323 CGTGCTGCCGATCCCACTACCGGTCCTACTA
* * * * *
25063918 CCACAACCCTCGATTCGGCTGGGGCTTAGACGTGGAATGTACTCTGTATGCCAAAGCCAACCCAT
1 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCAT
* *
25063983 GAAACGAGTGTACGGGCGCTCAGTCGGTCGAAGAGGCAGAATGCGTAAGCCGGGGATCAGCTCGG
66 GAAACGAGTGTACGGGCGCTCAGTCGCT-GGAGAGGCAGAATGCGTAAGCC-GGGATCAGCTCGG
* * *
25064048 T-CCCCCTACGTGCTGCCAATCCTGCTGCCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAA
129 TCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAA
25064112 TGAAC-TCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
194 TGAACTTC-GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * *
25064176 TGCGGGCTCTCAGTCGACCAGAGAGGCA
258 TGCGGGCACTCAGCCGATCGGAGAGGCA
25064204 GGATGCGCAA
Statistics
Matches: 514, Mismatches: 85, Indels: 53
0.79 0.13 0.08
Matches are distributed among these distances:
337 1 0.00
338 90 0.18
339 181 0.35
341 1 0.00
342 4 0.01
343 6 0.01
344 3 0.01
345 3 0.01
348 3 0.01
349 3 0.01
350 6 0.01
351 3 0.01
352 1 0.00
354 15 0.03
355 188 0.37
356 6 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (353 bp):
CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCAT
GAAACGAGTGTACGGGCGCTCAGTCGCTGGAGAGGCAGAATGCGTAAGCCGGGATCAGCTCGGTC
CCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATG
AACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
GGGCACTCAGCCGATCGGAGAGGCATAATACGCAAGCCAGGGATCAGCCCGATCCCCCTCAACGT
GCTGCCGATCCCACTACCGGTCCTACTA
Found at i:25064128 original size:26 final size:26
Alignment explanation
Indices: 25064099--25064151 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25064089 CTGGTCTGAT
*
25064099 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25064125 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25064151 C
1 C
25064152 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25065205 original size:159 final size:156
Alignment explanation
Indices: 25064845--25065343 Score: 459
Period size: 159 Copynumber: 3.2 Consensus size: 156
25064835 AGATCTGTAT
* * * ** *
25064845 GCTTAGACATCGAATGAACTACGTATGCCGAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* * * ** * * *
25064910 CCGACCGGAGAGGTAGAATGCACAATCC-GAGGATCGACCCGATCCCCCCTTGTGTTGTTGATCC
66 CCGACCGGAGAGGCAGAATGCTCAAGCCAG-GGATCGACTAGA-CCCCCCTCGTGCTGCTGATCC
** * *
25064974 TGCTGCTGCAACCCTCGATCCGGTCCGA
129 TGCTGCCACAACCCTCGGTCCGGTCAGA
* * * * * * *
25065002 TCTTAGAC-TGGGAATGAACTCCGAATGCATAAGTCAACTCACAAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCA
* * * *
25065066 GCCGACCGAAGAGGCATAATGCTCAAGCCAGGGATCGACTTGACCCCCATCTGCGTGCTGCTGGT
65 GCCGACCGGAGAGGCAGAATGCTCAAGCCAGGGATCGACTAGACCCCC--CT-CGTGCTGCTGAT
* * *
25065131 CCGGCTGCCACAACCCTCGGTCCGGTTAGG
127 CCTGCTGCCACAACCCTCGGTCCGGTCAGA
* * * *
25065161 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGAGAGTAAGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* * * * * *
25065226 TCG-CTAGGAGAGGCAGAATGCGT-AAGTCAGGGATCGGCTCAGTCCCCCCTACGTGCTGCCGAT
66 CCGAC-CGGAGAGGCAGAATGC-TCAAGCCAGGGATCGACT-AGACCCCCCT-CGTGCTGCTGAT
* *
25065289 CCTGCTGCCACAACCCTCGGTCCGATCCGA
127 CCTGCTGCCACAACCCTCGGTCCGGTCAGA
*
25065319 TCTTAGAC-TGGGAATGAACTCCGTA
1 GCTTAGACAT-GGAATGAACTCCGTA
25065344 AGCTTAGACT
Statistics
Matches: 271, Mismatches: 61, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
156 6 0.02
157 84 0.31
158 61 0.23
159 112 0.41
160 8 0.03
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCTCAAGCCAGGGATCGACTAGACCCCCCTCGTGCTGCTGATCCTG
CTGCCACAACCCTCGGTCCGGTCAGA
Found at i:25065349 original size:26 final size:26
Alignment explanation
Indices: 25065320--25065369 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
25065310 CCGATCCGAT
25065320 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
*
25065346 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
25065370 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:25065947 original size:26 final size:26
Alignment explanation
Indices: 25065911--25065963 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25065901 CCGATCTAAT
25065911 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
* * *
25065937 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
25065963 C
1 C
25065964 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:25067175 original size:26 final size:26
Alignment explanation
Indices: 25067146--25067198 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25067136 CCGATCCGAT
25067146 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
** * *
25067172 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
25067198 C
1 C
25067199 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:25067621 original size:355 final size:354
Alignment explanation
Indices: 25066968--25067624 Score: 942
Period size: 355 Copynumber: 1.9 Consensus size: 354
25066958 TCGCTACAAG
*
25066968 AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCTAACCCATGAAA
1 AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAA
* *
25067033 CGGGTGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGTAAATCAGAGATCGGCCCAGCCCC
66 CGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGTAAATCAGAGATCGGCCCAGCCCC
* * * *
25067098 CCTTACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTAAGAATGAA
131 CCTCACG-GCTACCGATCATGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTAAGAATGAA
* *
25067163 CTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGTGTGCGG
195 CTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGG
* ** * * * *
25067228 ACGTTCAGTTGGCCGGAGAGGCATAATGCGCCAGCTGGGGATAAGCCCGGTCCCCCTCTGCGTGC
260 ACGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCTGGGGATAAGCCCGGTCCCCCTCTGCGTGC
25067293 TACCGATCTCGCTGTCGGTCTTACTGCCAC
325 TACCGATCTCGCTGTCGGTCTTACTGCCAC
* *
25067323 AACCCTCGATTCGACTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCATGAA
1 AACCCTCGATCCGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCATGAA
* * * * * * *
25067387 ACGAGCGTGTGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCTCGGTCC
65 ACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGTAAATCAGAGATCGGCCCAG-CC
* * * * *
25067452 CCCCTGCAC-GCTACCGATCATGCTACCTCAACCCTCGATCTGGTCTGATCTTAGACTGAGAATG
129 CCCCT-CACGGCTACCGATCATGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTAAGAATG
* **
25067516 AACTCCGTATGCTTAGACTGGGGATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
193 AACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGC
*
25067581 GGGA-GCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCTGGGGAT
258 -GGACGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCTGGGGAT
25067625 CGAACAGGTG
Statistics
Matches: 264, Mismatches: 34, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
355 251 0.95
356 11 0.04
357 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (354 bp):
AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAA
CGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGTAAATCAGAGATCGGCCCAGCCCC
CCTCACGGCTACCGATCATGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTAAGAATGAAC
TCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGA
CGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCTGGGGATAAGCCCGGTCCCCCTCTGCGTGCT
ACCGATCTCGCTGTCGGTCTTACTGCCAC
Found at i:25068220 original size:26 final size:26
Alignment explanation
Indices: 25068191--25068243 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25068181 CCAGTTTGAT
25068191 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25068217 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25068243 C
1 C
25068244 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25068588 original size:26 final size:26
Alignment explanation
Indices: 25068559--25068611 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25068549 CCGATCTGAT
25068559 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25068585 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25068611 C
1 C
25068612 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25068894 original size:355 final size:359
Alignment explanation
Indices: 25068168--25068906 Score: 889
Period size: 355 Copynumber: 2.0 Consensus size: 359
25068158 ATCCTACTAC
* *
25068168 CGCAACCCTCGGTCC-AGTTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATG
1 CGCAACCCTCGATCCGAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATG
* **
25068232 AACTCCGTATGCCTAAATCAACCCATGAAACGAGCATGTGGGCGCTCAGCCGGCCTGAGAGGCAG
66 AACTCCGTATGCCTAAATCAACCCACGAAACGAGCATACGGGCGCTCAGCCGGCC------GCA-
* ** * ** * * * *
25068297 GTCGGAGAGGCATAATGCGTAAGTTGGGGATCAGCCCGGTCCCCGTCTGCGTGCTATCGATCACG
124 ---GGAGAGGCATAATGCGCAAGCCGGGAATCAGCCCCATCCCCCTCTACATGCTACCGATCACG
** * * *
25068362 CTGTTGGTCCTGCTGCCACTACCCTCACTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATG
186 CTGCCGGTCCTGCTACCACAACCCTCACTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATG
* * **
25068427 CCTAAGCCAACCCACGAAATGAACGTGCAGGCAGTCAGCCGGTCAGAGAGGTAGAATGCACAAGC
251 CCTAAGCCAACCCACGAAATGAACGTGCAGGCAGTCAGCCGATCAGAGAGGCAGAATAAACAAGC
* * *
25068492 CGGGGATCGACCCGATCCCTCCTACGTGCTGCCAATCCTGCTGT
316 CGGGGATCGACACGATCCCCCCTACGTGCTACCAATCCTGCTGT
*
25068536 CGCAACCCTCGATCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
1 CGCAACCCTCGATCCGAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATG
* * *
25068600 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGG-C-CA-GAGAGG
66 AACTCCGTATGCCTAAATCAACCCACGAAACGAGCATACGGGCGCTCAGCCGGCCGCAGGAGAGG
* * * * * *
25068662 CATAATGTGCAAGCCGGTAATCAGCCCCATCCCCCTCTATATGTTGCCGATTC-TGCTGCCGGTC
131 CATAATGCGCAAGCCGGGAATCAGCCCCATCCCCCTCTACATGCTACCGA-TCACGCTGCCGGTC
** * *
25068726 CTGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCA
195 CTGCTACCACAACCCTCACTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCA
* * * *
25068791 ACCCACGAAATGAGCGTGCAGGCATTCAGCCGATCGGAGAGGCAGAATAAACAAGTCGGGGATCG
260 ACCCACGAAATGAACGTGCAGGCAGTCAGCCGATCAGAGAGGCAGAATAAACAAGCCGGGGATCG
* * *
25068856 ACACGGTCCCCCCTGCGTGCTACCCATCCT-CTTGT
325 ACACGATCCCCCCTACGTGCTACCAATCCTGC-TGT
25068891 CGCAACCCTCGATCCG
1 CGCAACCCTCGATCCG
25068907 GCTAGGGCTT
Statistics
Matches: 320, Mismatches: 48, Indels: 19
0.83 0.12 0.05
Matches are distributed among these distances:
354 1 0.00
355 207 0.65
356 2 0.01
360 2 0.01
367 1 0.00
368 106 0.33
369 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (359 bp):
CGCAACCCTCGATCCGAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATG
AACTCCGTATGCCTAAATCAACCCACGAAACGAGCATACGGGCGCTCAGCCGGCCGCAGGAGAGG
CATAATGCGCAAGCCGGGAATCAGCCCCATCCCCCTCTACATGCTACCGATCACGCTGCCGGTCC
TGCTACCACAACCCTCACTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAA
CCCACGAAATGAACGTGCAGGCAGTCAGCCGATCAGAGAGGCAGAATAAACAAGCCGGGGATCGA
CACGATCCCCCCTACGTGCTACCAATCCTGCTGT
Found at i:25069077 original size:158 final size:157
Alignment explanation
Indices: 25068715--25069065 Score: 366
Period size: 158 Copynumber: 2.2 Consensus size: 157
25068705 TTGCCGATTC
* * * * * *
25068715 TGCTGCCGGTCCTGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACGTGGAATGTACTCCGTA
1 TGCTGCCGATCCT-CTGCCACAACCCTCGATCCGACTAGGGCTTAGAAGTGGAATGTACTCCGTA
* * * *
25068780 TGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCATTCAGCCGATCGGAGAGGCAGAATAAACAA
65 TACCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGACCGGAGAGGCAGAATAAACAA
*
25068845 GTCGGGGATCGACACGGTCCCCCCTGCG
130 GTCAGGGATCGACACGGTCCCCCCTGCG
* * * * * *
25068873 TGCTACCCATCCTCTTGTCGCAACCCTCGATCCGGCTAGGGCTTAGAAGTGGAATGTACTCTGTA
1 TGCTGCCGATCCTC-TGCCACAACCCTCGATCCGACTAGGGCTTAGAAGTGGAATGTACTCCGTA
* * * * * * * * ***
25068938 TACCTAAGCCAACCCATGAAACGAGCTTGCGGGCGCTCAGCTGGCCGGAGAGGTAGGATGCGCAA
65 TACCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGACCGGAGAGGCAGAATAAACAA
*
25069003 G-CTAGGGATCAGTC-CGG-CCCCTCCTGCG
130 GTC-AGGGATC-GACACGGTCCCC-CCTGCG
25069031 TGCTGCCGATCCTACTGCCACAACCCTCGATCCGA
1 TGCTGCCGATCCT-CTGCCACAACCCTCGATCCGA
25069066 TCTGATCTTA
Statistics
Matches: 154, Mismatches: 34, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
157 6 0.04
158 145 0.94
159 3 0.02
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (157 bp):
TGCTGCCGATCCTCTGCCACAACCCTCGATCCGACTAGGGCTTAGAAGTGGAATGTACTCCGTAT
ACCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCGACCGGAGAGGCAGAATAAACAAG
TCAGGGATCGACACGGTCCCCCCTGCG
Done.