Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 256 of 402
Found at i:25070687 original size:158 final size:158
Alignment explanation
Indices: 25070201--25070687 Score: 444
Period size: 158 Copynumber: 3.1 Consensus size: 158
25070191 ACATGGAAAA
* * *
25070201 AACTCCGTATGCCTAAGCCAACCCACGAAATGAACATGCGGGCGTTCAGCCGGCCGGAGAGGCAG
1 AACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAG
* * * * * ** * * *
25070266 AATGCACAAG-CTGAGGATTGACCCGGTCCCCGCTGTGTGCTATCGATCCTGCTACCACAACCAT
66 AATGCACAAGCCAG-GGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCT
*
25070330 CGGTCCGGTTTGATCTTAGACTGGGAATG
130 CGGTCCAGTTTGATCTTAGACTGGGAATG
* * **** * * * * *
25070359 AACTCCGTATGCATAAGTCAACTTGTGAAATGAGCGTGCGGGTGCTGAGCCGACCGAAGAGGCAT
1 AACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAG
* * * * **
25070424 AATGCGCAAGCCGGGGATCGG-TCCGATCCCCCTCTACGTGCTG-CTGGTCCCACTGCCACAACC
66 AATGCACAAGCCAGGGATCGGCT-CGGTCCCCC-CTACGTGCTGTC-GATCCTGCTGCCACAACC
** * ** * *
25070487 CTCAAT-CTGGCTCAGGCTTAGACAT-GGAATG
128 CTCGGTCCAGTTTGA-TCTTAGAC-TGGGAATG
* * * * ** *
25070518 AGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTAGGTCGGAGAGGCAG
1 AACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAG
* * * *
25070583 AATGCATAAGCCAGGGAACGGCTCGGTCCCCCCTACGTGCTGTCGATCCTGCTGGCGCAACCCTC
66 AATGCACAAGCCAGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTC
25070648 GGTCCAGTTTGATCTTAGACTGGGAATG
131 GGTCCAGTTTGATCTTAGACTGGGAATG
25070676 AACTCCGTATGC
1 AACTCCGTATGC
25070688 TTAGACTGGG
Statistics
Matches: 246, Mismatches: 73, Indels: 20
0.73 0.22 0.06
Matches are distributed among these distances:
157 1 0.00
158 127 0.52
159 116 0.47
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
AACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAG
AATGCACAAGCCAGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTC
GGTCCAGTTTGATCTTAGACTGGGAATG
Found at i:25070697 original size:26 final size:26
Alignment explanation
Indices: 25070661--25070713 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25070651 CCAGTTTGAT
25070661 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25070687 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25070713 C
1 C
25070714 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25071042 original size:26 final size:26
Alignment explanation
Indices: 25071013--25071065 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25071003 CTGATCCGAT
*
25071013 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* *
25071039 CTTAGATTGGGGATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
25071065 C
1 C
25071066 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:25072278 original size:26 final size:26
Alignment explanation
Indices: 25072249--25072301 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25072239 TCGGTTCGAT
*
25072249 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25072275 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25072301 C
1 C
25072302 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25072694 original size:171 final size:169
Alignment explanation
Indices: 25072274--25072720 Score: 500
Period size: 171 Copynumber: 2.6 Consensus size: 169
25072264 AACTTCGTAT
* * * * * * *
25072274 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAATCCACGAAACGAGCGTTCGGGTACTCAG
1 GCTTAGACT-GGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * * * * * * * *
25072339 TCAACCGGAGAGGCATAATGCGTAAGCCGAGGATTAGCCCGATCCCTTTTTGCTTACTGTCGATC
65 -CCATCGGAGAGGCAAAATGCGTAAGCTGAGGATCAACCCGATCCCCTTCTGCGTACTGCCGATC
* **
25072404 CCGCTGCCGGTCCTGCTGCCATAACCCTCAGTCCGGTTGGG
129 CCGCTGCCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGG
* *
25072445 GCTTAGACATTGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTTAG
1 GCTTAGAC-TGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * * * *
25072510 CC-TGCAAGAGAGGCAAAATGCGCAAGCTGAGGATCAACCTGGTCCCCTTCTGCGTGCTGCCGAT
65 CCAT-C-GGAGAGGCAAAATGCGTAAGCTGAGGATCAACCCGATCCCCTTCTGCGTACTGCCGAT
* * * **
25072574 CCCGCTGCCTGTCCTGCTGCTACAACCCTCGGTTTGACTGGG
128 CCCGCTGCCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGG
*
25072616 GCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGAC-TGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * *
25072681 CCGATCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACCC
65 CC-ATCGGAGAGGCAAAATGCGTAAGCTGAGGATCAACCC
25072721 TGTCCCTCCT
Statistics
Matches: 229, Mismatches: 42, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
170 2 0.01
171 224 0.98
172 2 0.01
173 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (169 bp):
GCTTAGACTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
CATCGGAGAGGCAAAATGCGTAAGCTGAGGATCAACCCGATCCCCTTCTGCGTACTGCCGATCCC
GCTGCCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGG
Found at i:25072880 original size:526 final size:514
Alignment explanation
Indices: 25072069--25073016 Score: 1211
Period size: 526 Copynumber: 1.8 Consensus size: 514
25072059 TCCCGCTACC
*
25072069 ACAACCCTCAGTCCGACTGGGGCTTACACAAGGAATGAGCTCCCTATGCCTAAGCCAACCCATGA
1 ACAACCCTCAGTCCGACTGGGGCTTACACAAGGAATGAGCTCCCTATGCCTAAGCCAACCCACGA
* * *
25072134 AACGGGCGTACGGGCACTCAGCCAACCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCCTGGTC
66 AACGAGCGTACGGGCACTCAGCCAACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGCCCTGGTC
* * * * * *
25072199 CCCCCTGCGTGCTGCCGATCCAGCTGGCGCAACCATTGGTTCGGTTCGATCTTAGACTGGGAATG
131 CCCCCTACGTGCTACCGATCCAGCTGGCGCAACCATCGATTCAGTTCGATCTTAGACTAGGAATG
* * * * **
25072264 AACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAATCCACGAAACGAGCGTTC
196 AACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGC
* * * * * *
25072329 GGGTACTCAGTCAACCGGAGAGGCATAATGCGTAAGCC-GAGGATTAGCCCGATCCCTTTTTGCT
261 GGGCACTCAGCCAACCGGAGAGGCATAATGCGCAAGCCAG-GGATCAGCCCGAT--C----TACC
* * ** *
25072393 TACTGTCGATCCCGCTGCCGGTCCTGCTGCCATAACCCTCAGTCCGGTTGGGGCTTAGACATTGA
319 T-CTG-C-AT---GCTGCCGGTCCTGCAGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGA
25072458 ATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTTAGCCTGCAAGAGAGG
378 ATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTTAGCCTGCAAGAGAGG
25072523 CAAAATGCGCAAGCTGAGGATCAACCTGGTCCCCTTCTGCGTGCTGCCGATCCCGCTGCCTGTCC
443 CAAAATGCGCAAGCTGAGGATCAACCTGGTCCCCTTCTGCGTGCTGCCGATCCCGCTGCCTGTCC
25072588 TGCTGCT
508 TGCTGCT
* ** * ** *
25072595 ACAACCCTCGGTTTGACTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAACCCACG
1 ACAACCCTCAGTCCGACTGGGGCTTACACAAGGAATG-AGCTCCCTATGCCTAAGCCAACCCACG
* * * * * *
25072659 AAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACCCT-G
65 AAACGAGCGTACGGGCACTCAGCCAACCGGAGAGGCAGAATGCGTAAGCCGGGGATCG-CCCTGG
* * * * *
25072723 TCCCTCCTATGTGCTACCGATCCTA-TTGTCGCAACCCTCGATTCAGTTCGATCTTAGACTAGGA
129 TCCCCCCTACGTGCTACCGATCC-AGCTGGCGCAACCATCGATTCAGTTCGATCTTAGACTAGGA
* *
25072787 ATGAACTCCATATGCTTAGACTGGGGATAAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCG
193 ATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * *
25072852 CGCGGGCGCTCAGCCGACCGGAGAGGCATAATGCGCAAGTCAGGGATCAGCCTGATCTACCTCTG
258 CGCGGGCACTCAGCCAACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCTACCTCTG
* * * **
25072917 CATGCTGTCGGTCCTGCAGTCACAACCCTCGGTCCGACTGGGGCTTAGATGTGGAATGTACTCCG
323 CATGCTGCCGGTCCTGCAGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGTACTCCG
*
25072982 TATGCCTAAGCCAACCCACGAAATGAGTGTGCGGG
388 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGG
25073017 TGCTCAGCCA
Statistics
Matches: 361, Mismatches: 57, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
514 86 0.24
517 2 0.01
518 1 0.00
519 3 0.01
520 3 0.01
524 1 0.00
526 259 0.72
527 6 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (514 bp):
ACAACCCTCAGTCCGACTGGGGCTTACACAAGGAATGAGCTCCCTATGCCTAAGCCAACCCACGA
AACGAGCGTACGGGCACTCAGCCAACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGCCCTGGTC
CCCCCTACGTGCTACCGATCCAGCTGGCGCAACCATCGATTCAGTTCGATCTTAGACTAGGAATG
AACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGC
GGGCACTCAGCCAACCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCTACCTCTGCAT
GCTGCCGGTCCTGCAGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTAT
GCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTTAGCCTGCAAGAGAGGCAAAATGCGCAAG
CTGAGGATCAACCTGGTCCCCTTCTGCGTGCTGCCGATCCCGCTGCCTGTCCTGCTGCT
Found at i:25073083 original size:343 final size:352
Alignment explanation
Indices: 25072595--25073562 Score: 1059
Period size: 343 Copynumber: 2.7 Consensus size: 352
25072585 TCCTGCTGCT
**
25072595 ACAACCCTCGGTTTGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGA
1 ACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGA
* * * * * *
25072660 AATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCTGGGGATCGACCCTGTC
66 AATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGAAAGCCGGGGATCGGCCCGGTC
* * ** * *
25072725 CCTCCTATGTGCTACCGATCCTATTGTCGCAACCCTCGATTCAGTTCGATCTTAGACTAGGAATG
131 CCCCCT-TATGCTACCGATCCTGCTG-CGCAACCCTCGA-TCAGTCCGATCTTAGACTGGGAATG
* * *
25072790 AACTCCATATGCTTAGACTGGGGATAAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGCGC
193 AACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCGC
* *
25072855 GG-G-C-G-C-TC-A-GCCGACCGGAGAGGCATAATGCGCAAGTC-AGGGATCAGCCTGATCTAC
258 GGCGCCAGTCATCAAGGCCGACCGGAGAGGCATAATGCGCAAGTCGA-GGATCAGCCCGATCCAC
* *
25072912 CTCTGCATGCT-G-T-CG-G-TCCTGCAGTC
322 CTCTGCATGCTCGATCCGCGTTCCTACAGCC
*
25072938 ACAACCCTCGGTCCGACTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGA
1 ACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGA
* * * *
25073003 AATGAGTGTGCGGGTGCTCAGCC-AGCCAGAGAGGTAGAATACGAAAGCCGGGGATCGGCCCGGT
66 AATGAGCGTGCGGGCGCTCAGCCGA-CCGGAGAGGTAGAATGCGAAAGCCGGGGATCGGCCCGGT
* * * * *
25073067 CCCCCCTGCATGCTACCGATCCTGCTGCCGCAACACTCGATCCGATCCAATCTTAAACTGGGAAT
130 CCCCCCT-TATGCTACCGATCCTGCTG-CGCAACCCTCGATCAG-TCCGATCTTAGACTGGGAAT
** * *
25073132 GAACTCCGTATGCTTAGACTGGGGATGAACTCCGTACACCTAAGTCAACCCACGAAACGAGCGTG
192 GAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCG
* * *
25073197 TGGCTGCTCAGTCGATCGAAAAGGCCGATCGGAGAGGCATAATGTGCAAGTCGAGGATCAGCCCG
257 CGGC-GC-CAGTC-ATC---AAGGCCGACCGGAGAGGCATAATGCGCAAGTCGAGGATCAGCCCG
* * ** *
25073262 TTCCCCCTCTGTGTGCTACCGATCCCGCTACCGTTCCTACTGCC
316 ATCCACCTCTGCATGCT--CGAT-CCG----CGTTCCTACAGCC
* ** * *
25073306 ACAACCCTCAGTCCGGTTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAACCCAACCCATGA
1 ACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGA
* * * * * * * * *
25073371 AACGAGCGTGCAGGCGCTCAGTCGACCGGAGGGGTAGAATGTGCAAGCCGAGGATCAGCCGGGT-
66 AATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGAAAGCCGGGGATCGGCCCGGTC
*
25073435 CCCCCTTATG-TACTGTTGATCCTGCTGCTGCAACCCTCGATCTAGTCCGATCTTAGACTGGGAA
131 CCCCCTTATGCTAC---CGATCCTGCTGC-GCAACCCTCGATC-AGTCCGATCTTAGACTGGGAA
*
25073499 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCG
191 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
25073563 TGTGTGTGCT
Statistics
Matches: 517, Mismatches: 74, Indels: 43
0.82 0.12 0.07
Matches are distributed among these distances:
342 4 0.01
343 222 0.43
345 1 0.00
347 1 0.00
348 1 0.00
349 1 0.00
351 2 0.00
355 1 0.00
356 49 0.09
357 1 0.00
359 1 0.00
360 1 0.00
362 2 0.00
365 3 0.01
366 3 0.01
367 8 0.02
368 214 0.41
369 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (352 bp):
ACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGA
AATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGAAAGCCGGGGATCGGCCCGGTC
CCCCCTTATGCTACCGATCCTGCTGCGCAACCCTCGATCAGTCCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCGCGGC
GCCAGTCATCAAGGCCGACCGGAGAGGCATAATGCGCAAGTCGAGGATCAGCCCGATCCACCTCT
GCATGCTCGATCCGCGTTCCTACAGCC
Found at i:25073147 original size:26 final size:26
Alignment explanation
Indices: 25073118--25073167 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
25073108 CCGATCCAAT
25073118 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
25073144 CTTAGACTGGGGATGAACTCCGTA
1 CTTAAACTGGGAATGAACTCCGTA
25073168 CACCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:25073438 original size:368 final size:359
Alignment explanation
Indices: 25072517--25073614 Score: 1157
Period size: 368 Copynumber: 3.1 Consensus size: 359
25072507 TAGCCTGCAA
* * * *
25072517 GAGAGGCAAAATGCGCAAG-CTGAGGATCAACCTGGTCCCCTTCTGCGTGCTGCCGATCCCGCTG
1 GAGAGGCATAATGCGCAAGTC-GAGGATCAGCCTGATCCCCCTCTGCGTGCT-CCGATCCCGCT-
* **
25072581 CC-TGTCCTGCTGCTACAACCCTCGGTTTGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCC
63 CCGT-TCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCC
* * * *
25072645 TAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCTG
127 TAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG-CGACCGGAGAGGTAGAATGCGAAAGCCG
* * * ** * *
25072710 GGGATCGACCCTGTCCCTCCTATGTGCTACCGATCCTATTGTCGCAACCCTCGATTCAGTTCGAT
191 GGGATCG-CCCGGTCCCCCCT-TATGCTACCGATCCTGCTGCCGCAACCCTCGA-TCAGTCCGAT
* * * *
25072775 CTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATAAACTTCGTATGCCTAAGTCAACCC
253 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* *
25072840 ATGAAACGAGCGCGCGG-G--C-G-C--TC---AGCCGACCG
318 ATGAAACGAGCGTGTGGTGCTCAGTCGATCGAAAGCCGACCG
** *
25072872 GAGAGGCATAATGCGCAAGTC-AGGGATCAGCCTGATCTACCTCTGCATGCT--G-T--CG----
1 GAGAGGCATAATGCGCAAGTCGA-GGATCAGCCTGATCCCCCTCTGCGTGCTCCGATCCCGCTCC
* * *
25072927 G-TCCTGCAGTCACAACCCTCGGTCCGACTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAA
65 GTTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAA
* * * * *
25072991 GCCAACCCACGAAATGAGTGTGCGGGTGCTCAGCCAGCCAGAGAGGTAGAATACGAAAGCCGGGG
130 GCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCGA-CCGGAGAGGTAGAATGCGAAAGCCGGGG
* * * *
25073056 ATCGGCCCGGTCCCCCCTGCATGCTACCGATCCTGCTGCCGCAACACTCGATCCGATCCAATCTT
194 ATC-GCCCGGTCCCCCCT-TATGCTACCGATCCTGCTGCCGCAACCCTCGATCAG-TCCGATCTT
* ** *
25073121 AAACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTACACCTAAGTCAACCCACG
256 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATG
*
25073186 AAACGAGCGTGTGGCTGCTCAGTCGATCGAAAAGGCCGATCG
321 AAACGAGCGTGTGG-TGCTCAGTCGATCG-AAA-GCCGACCG
* * * *
25073228 GAGAGGCATAATGTGCAAGTCGAGGATCAGCCCGTTCCCCCTCTGTGTGCTACCGATCCCGCTAC
1 GAGAGGCATAATGCGCAAGTCGAGGATCAGCCTGATCCCCCTCTGCGTGCT-CCGATCCCGCT-C
* * **
25073293 CGTTCCTACTGCCACAACCCTCAGTCCGGTTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTA
64 CGTTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTA
* * * * * * * *
25073358 ACCCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGACCGGAGGGGTAGAATGTGCAAGCCGAG
129 AGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG-CGACCGGAGAGGTAGAATGCGAAAGCCGGG
* * *
25073423 GATCAGCCGGGT-CCCCCTTATG-TACTGTTGATCCTGCTGCTGCAACCCTCGATCTAGTCCGAT
193 GATC-GCCCGGTCCCCCCTTATGCTAC---CGATCCTGCTGCCGCAACCCTCGATC-AGTCCGAT
*
25073486 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCT
253 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * *
25073551 ATGAAACGAGCGTGTGTGTGCTCAATCGACCGAAGAAGCTGACCA
318 ATGAAACGAGCGTGTG-GTGCTCAGTCGATCG-A-AAGCCGACCG
*
25073596 GAGAGTCATAATGCGCAAG
1 GAGAGGCATAATGCGCAAG
25073615 CCAGTCAGAG
Statistics
Matches: 612, Mismatches: 92, Indels: 65
0.80 0.12 0.08
Matches are distributed among these distances:
342 5 0.01
343 226 0.37
344 1 0.00
345 1 0.00
347 1 0.00
348 1 0.00
349 3 0.00
351 3 0.00
352 1 0.00
354 1 0.00
355 41 0.07
356 50 0.08
357 1 0.00
359 1 0.00
360 1 0.00
362 2 0.00
365 3 0.00
366 3 0.00
367 7 0.01
368 254 0.42
369 6 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (359 bp):
GAGAGGCATAATGCGCAAGTCGAGGATCAGCCTGATCCCCCTCTGCGTGCTCCGATCCCGCTCCG
TTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAG
CCAACCCACGAAATGAGCGTGCGGGCGCTCAGCGACCGGAGAGGTAGAATGCGAAAGCCGGGGAT
CGCCCGGTCCCCCCTTATGCTACCGATCCTGCTGCCGCAACCCTCGATCAGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
AGCGTGTGGTGCTCAGTCGATCGAAAGCCGACCG
Found at i:25073515 original size:26 final size:26
Alignment explanation
Indices: 25073486--25073538 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25073476 CTAGTCCGAT
25073486 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25073512 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25073538 C
1 C
25073539 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25073739 original size:26 final size:26
Alignment explanation
Indices: 25073709--25073761 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25073699 CCGTTTCGAT
25073709 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25073735 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25073761 C
1 C
25073762 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25074160 original size:158 final size:157
Alignment explanation
Indices: 25073868--25074385 Score: 586
Period size: 158 Copynumber: 3.2 Consensus size: 157
25073858 CCGATCTCGC
* * * * *
25073868 TGCCGGTCCTACTGCCACAACCCTCAGTTTGACTGGGGCTTAGACATGGAATGTACTCTGTACGC
1 TGCCGATCCTGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGTACTCTGTATGC
* *
25073933 CTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTTAGTCGGTCGAAGAGGCAGAATGTGCAAGTC
66 CTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTTAGTCGGTCGGAGAGGCAGAATGCGCAAGTC
25073998 GGGGATCGGCTCGGTCCCCCCTATGTGT
131 GGGGATCGGC-CGGTCCCCCCTATGTGT
* * *
25074026 TGCCGATCCTGCTGCCACAACCCTCGGTTCGGCTAGGGCTTAGGCATGGAATGTACTCTGTATGC
1 TGCCGATCCTGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGTACTCTGTATGC
* * * *
25074091 CTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTTAGCCGGTCGGAGAGGCAGAATGCGCAAGTA
66 CTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTTAGTCGGTCGGAGAGGCAGAATGCGCAAGTC
* * *
25074156 GGGGATCAGCCTAGTCCCCCTCTGCGTGCTACCGAT
131 GGGGATCGGCC-GGTCCCCC-CT--ATG-T---G-T
* * * * * * *
25074192 CCCGCTGCCTATCCTGCTACCACAATCATCGGTTCGATTGGGGATTAGACATGGAGTGTACTCTG
1 -----TGCCGATCCTGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGTACTCTG
* * * *
25074257 TATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAGTCGATCGGAGAGGCAGAATGCGC
61 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTTAGTCGGTCGGAGAGGCAGAATGCGC
* * *
25074322 AAGCCGGGGATCGGCCCGGTCCCCCCTACGTGC
126 AAGTCGGGGATCGG-CCGGTCCCCCCTATGTGT
* * *
25074355 TGTCGATCCTGCTGCCACAACCTTCGATTCG
1 TGCCGATCCTGCTGCCACAACCCTCGGTTCG
25074386 GTCCGATCTT
Statistics
Matches: 298, Mismatches: 47, Indels: 30
0.79 0.13 0.08
Matches are distributed among these distances:
157 1 0.00
158 157 0.53
159 2 0.01
161 2 0.01
162 1 0.00
164 1 0.00
165 1 0.00
166 1 0.00
167 1 0.00
168 1 0.00
170 2 0.01
171 126 0.42
172 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (157 bp):
TGCCGATCCTGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGTACTCTGTATGC
CTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTTAGTCGGTCGGAGAGGCAGAATGCGCAAGTC
GGGGATCGGCCGGTCCCCCCTATGTGT
Found at i:25074316 original size:171 final size:170
Alignment explanation
Indices: 25074026--25074370 Score: 447
Period size: 171 Copynumber: 2.0 Consensus size: 170
25074016 CCCTATGTGT
* * * * *
25074026 TGCCGATCCTGCTGCCACAACCCTCGGTTCGGCTAGGGCTTAGGCATGGAATGTACTCTGTATGC
1 TGCCGATCCTGCTACCACAACCATCGGTTCGACTAGGGATTAGACATGGAATGTACTCTGTATGC
** * * * *
25074091 CTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTTAGCCGGTCGGAGAGGCAGAATGCGCAAGTA
66 CTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCA
* *
25074156 GGGGATCAGCCTAGTCCCCCTCTGCGTGCTACCGATCCCGC
131 GGGGATCAGCCCAGTCCCCC-CTACGTGCTACCGATCCCGC
* * * * *
25074197 TGCCTATCCTGCTACCACAATCATCGGTTCGATTGGGGATTAGACATGGAGTGTACTCTGTATGC
1 TGCCGATCCTGCTACCACAACCATCGGTTCGACTAGGGATTAGACATGGAATGTACTCTGTATGC
* * *
25074262 CTAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAGCC
66 CTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCA
* * ** *
25074327 GGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGC
131 GGGGATCAGCCCAGTCCCCCCTACGTGCTACCGATCCCGC
25074367 TGCC
1 TGCC
25074371 ACAACCTTCG
Statistics
Matches: 148, Mismatches: 26, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
170 20 0.14
171 128 0.86
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (170 bp):
TGCCGATCCTGCTACCACAACCATCGGTTCGACTAGGGATTAGACATGGAATGTACTCTGTATGC
CTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCA
GGGGATCAGCCCAGTCCCCCCTACGTGCTACCGATCCCGC
Found at i:25074415 original size:329 final size:328
Alignment explanation
Indices: 25073734--25074419 Score: 847
Period size: 329 Copynumber: 2.1 Consensus size: 328
25073724 AACTCCGTAT
* * * **
25073734 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATTAGCGTTCGGGCACTCAA
1 GCTTAGACT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCACTCAA
* * * * * *
25073799 CCGGCCGAAGAGGCATAACGCGTAAGTCGAGGATTAGCTAGGTCCCCTTCTATGTGCTACCGATC
65 CCGGCCGAAGAGGCAGAACGCGCAAGTAGAGGATCAGCTAGGTCCCCCTCTACGTGCTACCGATC
* * * * * *
25073864 TCGCTGCCGGTCCTACTGCCACAACCCTCAGTTTGACTGGGGCTTAGACATGGAATGTACTCTGT
130 CCGCTGCCGATCCTACTACCACAACCATCAGTTCGACTGGGGATTAGACATGGAATGTACTCTGT
* * * *
25073929 ACGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTTAGTCGGTCGAAGAGGCAGAATGTGCA
195 ACGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGTCGATCGAAGAGGCAGAATGCGCA
* * * * *
25073994 AGTCGGGGATCGGCTCGGTCCCCCCTATGTGTTGCCGATCCTGCTGCCACAACCCTCGGTTCGGC
260 AGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGATTCGGC
*
25074059 TAGG
325 TAGA
* * * *
25074063 GCTTAGGCATGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGT-GGGCGCTTA
1 GCTTAGAC-TGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGT-TCGGGCACTCA
* * * * * *
25074127 GCCGGTCGGAGAGGCAGAATGCGCAAGTAGGGGATCAGCCTA-GTCCCCCTCTGCGTGCTACCGA
64 ACCGGCCGAAGAGGCAGAACGCGCAAGTAGAGGATCAG-CTAGGTCCCCCTCTACGTGCTACCGA
* * * * * *
25074191 TCCCGCTGCCTATCCTGCTACCACAATCATCGGTTCGATTGGGGATTAGACATGGAGTGTACTCT
128 TCCCGCTGCCGATCCTACTACCACAACCATCAGTTCGACTGGGGATTAGACATGGAATGTACTCT
* * *
25074256 GTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAGTCGATCGGAGAGGCAGAATGCG
193 GTACGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGTCGATCGAAGAGGCAGAATGCG
* *
25074321 CAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCTTCGATTCG
258 CAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGATTCG
*
25074386 G-TCCGA
323 GCT-AGA
*
25074392 TCTTAGACTGGAAATGAACTCTGTATGC
1 GCTTAGACTGG-AATGAACTCTGTATGC
25074420 TTAGACTGGG
Statistics
Matches: 300, Mismatches: 52, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
328 4 0.01
329 291 0.97
330 5 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (328 bp):
GCTTAGACTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCACTCAAC
CGGCCGAAGAGGCAGAACGCGCAAGTAGAGGATCAGCTAGGTCCCCCTCTACGTGCTACCGATCC
CGCTGCCGATCCTACTACCACAACCATCAGTTCGACTGGGGATTAGACATGGAATGTACTCTGTA
CGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGTCGATCGAAGAGGCAGAATGCGCAA
GCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGATTCGGCT
AGA
Found at i:25074434 original size:26 final size:26
Alignment explanation
Indices: 25074393--25074445 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25074383 TCGGTCCGAT
25074393 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
** *
25074419 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
25074445 C
1 C
25074446 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:25075170 original size:26 final size:26
Alignment explanation
Indices: 25075129--25075181 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25075119 CTGGTCCGAT
25075129 CTTAGACTGGAAATGAACACCGTATG
1 CTTAGACTGGAAATGAACACCGTATG
**
25075155 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTGGAAATGAACACCGTATG
25075181 C
1 C
25075182 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACACCGTATG
Found at i:25075246 original size:368 final size:366
Alignment explanation
Indices: 25074135--25075250 Score: 1285
Period size: 368 Copynumber: 3.0 Consensus size: 366
25074125 TAGCCGGTCG
* * ** * *
25074135 GAGAGGCAGAATGCGCAAGTAGGGGATCAGCCTAGTCCCCCTCTGCGTGCTACCGATCCCGCTGC
1 GAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGT
* * * * * * * *
25074200 CTATCCTGCTACCACAATCATCGGTTCGATTGGGGATTAGACATGGAGTGTACTCTGTATGCCTA
66 CGATCCTGCTGCCACAACCATCGATCCGATTGGGGATTAGACGTGGAATGTACTCCGTATGCCTA
* * * *
25074265 AGCCAACCCATGAAACGAGCGTACGAGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAGCCGGG
131 AGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGAG
* * *
25074330 GATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCTTCGAT-TCGGTCCGATC
196 GATCGGCCCGGT-CCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCT-GGTCCGATC
* * **
25074394 TTAGACTGGAAATGAACTCTGTATGCTTAGACTGGGGATGAACTTTGTATGCCTAAGTCAACCCA
259 TTAGACTGGAAATGAACACCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
25074459 TAAAACGGGCGTGCAGGCGCTCAATCGGCCAGAGAGGCCGATC
324 TGAAACGAGCGTGCAGGCGCTCAACCGGCCGGAGAAGCTGATC
** ** *
25074502 GGAGAGGCATAATGCGCAAG-CTGGGGATCAGCCCGGTCCGTCTCTATGTGCTGTCGATCCCGCT
1 -GAGAGGCATAATGCGCAAGTC-GGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCGCT
* * * * * *
25074566 ATCGGTCCTGCAGCCACAA-CATTC-ACTCC-AGTTGGGGCTTAGATGTGGAAAGTACTCCGTAT
64 GTCGATCCTGCTGCCACAACCA-TCGA-TCCGA-TTGGGGATTAGACGTGGAATGTACTCCGTAT
* * *
25074628 GCCTTAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATACGCAAG
126 GCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAG
* * * * * * * * *
25074693 CCGAGGGTCGGCCCGGTCCTCTCTGTGTGCT-ACTGATCCTACTACCGCAACCCTCGGTCCGATC
191 CCGAGGATCGGCCCGGTCC-CCCTGCGTGCTGTC-GATCCTGCTGCCGCAACCCTCGATCTGGTC
* * *
25074757 CAATCTTAAACTGGCAATGAACACCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
254 CGATCTTAGACTGGAAATGAACACCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
** * ** *
25074822 ACCC-TCGAAACGAGCGTGTTGGTGCTCAACCGGTAGGAG-AGGTCGATC
319 ACCCAT-GAAACGAGCGTGCAGGCGCTCAACCGGCCGGAGAAGCT-GATC
** * * *
25074870 GAAGAGGCATAATGCATAAGTCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCCAATCCCACTG
1 G-AGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTG
* * *
25074935 TCGATCCTGCTGCCACAACCCTCGATCCGACTGGGGGTTAGACGTGGAATGTACTCCGTATGCCT
65 TCGATCCTGCTGCCACAACCATCGATCCGATTGGGGATTAGACGTGGAATGTACTCCGTATGCCT
* * * * *
25075000 AAGCCAACCCACGAAACGAGAGTGCGAGCGCTCAGCCGGTCGGAGAGGCAGAATGTGTAAGTCGA
130 AAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGA
* * *
25075065 GGATCGGCTCGGTCCCCCATGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAATCTGGTCCGATC
195 GGATCGGCCCGGTCCCCC-TGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCCGATC
*
25075130 TTAGACTGGAAATGAACACCGTATGCTTAGACTGGGGATGAACACCGTATGCCTAAGTCAACCCA
259 TTAGACTGGAAATGAACACCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* * * **
25075195 TGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAAGCTGGCC
324 TGAAACGAGCGTGCAGGCGCTCAACCGGCCGGAGAAGCTGATC
25075238 AGAGAGGCATAAT
1 -GAGAGGCATAAT
25075251 CACAAGCTGA
Statistics
Matches: 615, Mismatches: 114, Indels: 38
0.80 0.15 0.05
Matches are distributed among these distances:
367 11 0.02
368 594 0.97
369 10 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (366 bp):
GAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGT
CGATCCTGCTGCCACAACCATCGATCCGATTGGGGATTAGACGTGGAATGTACTCCGTATGCCTA
AGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGAG
GATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTT
AGACTGGAAATGAACACCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATG
AAACGAGCGTGCAGGCGCTCAACCGGCCGGAGAAGCTGATC
Found at i:25075426 original size:222 final size:222
Alignment explanation
Indices: 25075040--25075445 Score: 609
Period size: 222 Copynumber: 1.8 Consensus size: 222
25075030 CTCAGCCGGT
* * * * * * *
25075040 CGGAGAGGCAGAATGTGTAAGTCGAGGATCGGCTCGGTCCCCCATGCGTGCTGTCGATCCTGCTG
1 CGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCATACGTGCTGTCGATCCTGCTA
**
25075105 TCGCAACCCTCAATCTGGTCCGATCTTAGACTGGAAATGAACACCGTATGCTTAGACTGGGGATG
66 TCGCAACCCTCAATCTGGTCCGATCTTAGACTGGAAATGAACACCGTATGCTTAGACTGGGGACA
* ** *
25075170 AACACCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAAGCTG
131 AACACCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGAGCTCAGCCGACCGGAGAAGCTG
25075235 GCCAGAGAGGCATAATCACAAGCTGAC
196 GCCAGAGAGGCATAATCACAAGCTGAC
25075262 CGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCTCC-TACGTGCTGTCGATCCTGCT
1 CGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCC-CCATACGTGCTGTCGATCCTGCT
* * * * *
25075326 ATCGCAACCCTCGAT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGA
65 ATCGCAACCCTCAATCT-GGTCCGATCTTAGACTGGAAATGAACACCGTATGCTTAGACTGGGGA
*
25075390 CAAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGAGCTCAGCCGAC
129 CAAACACCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGAGCTCAGCCGAC
25075446 TAGAGAGGTA
Statistics
Matches: 163, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
221 1 0.01
222 160 0.98
223 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (222 bp):
CGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCATACGTGCTGTCGATCCTGCTA
TCGCAACCCTCAATCTGGTCCGATCTTAGACTGGAAATGAACACCGTATGCTTAGACTGGGGACA
AACACCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGAGCTCAGCCGACCGGAGAAGCTG
GCCAGAGAGGCATAATCACAAGCTGAC
Found at i:25076950 original size:26 final size:26
Alignment explanation
Indices: 25076910--25076961 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25076900 TGGTCTGATT
25076910 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
25076936 TTAGACTGAGG-ATGAATTCCGTATGC
1 TTAGACTG-GGAATGAACTCCGTATGC
25076962 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:25077097 original size:367 final size:363
Alignment explanation
Indices: 25076355--25077310 Score: 1027
Period size: 367 Copynumber: 2.6 Consensus size: 363
25076345 CTGTCGGTCT
* * *
25076355 CGCTACCACAACCCTTGGTTCGGCTGGGGCTTAGACATGGAATGGGCTCCCTATGCCTAAGCCAA
1 CGCTACCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAAT-GACTCCATATGCCTAAGCCAA
* * * * * * *
25076420 CCCACGAAA-AAGGCATACGGGCGCTCAACCGGCTGGAGAGGCAAAATGCGCAAGCTAGGGATTA
65 CCCACGAAAGAA--CGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCGA-GGATCA
* * *
25076484 GCCCGGTGCCCCCTGCGTGCTGTCGATCCTGTTACCGTAACCCTCGATTTGGTTCTATCTTAGAC
127 -CCTGGT-CCCCCTGCGTGCTGTCGATCCTGTTACCGCAACCCTCGATCTGGTTCTATCTTAGAC
* * * *
25076549 TGGGAATGAACTCTGTATGCTTAGACTGAGGATGATTTTCGTATGCCTAAGTCAACCCACAAAAT
190 TGGGAATGAACTCCGTATGCTTAGACTGAGGATGAATTCCGTATGCCTAAGTCAACCCACAAAAC
* * * * * *
25076614 GAAAGTTCGGCCGCTCAAGCAGCCGGAGAGGTCAGCCAGAGAGGCATAATGCGCCAGCCGAAGAT
255 GAAAGTGCGGACGCTCAAGCAGCCGAAGAGGCCAGCCAGAGAAGCATAATGCGCAAGCCGAAGAT
* * **
25076679 CAGCCCAGTCTTCCTCTGCGTGCTGCTGATCCTGTTACCGATCC
320 CAGCCCAGTCCTCCTCTACGTGCTGCTGATCCCATTACCGATCC
* * * * *
25076723 TGCTACCACAACCCTCGGTTTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCTTAAGCCAA
1 CGCTACCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATG-ACTCCATATGCCTAAGCCAA
* * * *
25076788 CCCACGAAATGAACGTACGGGCGCTCAGCCGACCGGAGGGGTAGAATACACAAGTCGAGGATCGA
65 CCCACGAAA-GAACGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAG-CGAGGATC-A
* * * *
25076853 CCTGGTCCCCCCTGTGTGCTGTCGATCCTGTTGCC-CAACCCTTGATCTGG-TCTGATTTTAGAC
127 CCTGGT-CCCCCTGCGTGCTGTCGATCCTGTTACCGCAACCCTCGATCTGGTTCT-ATCTTAGAC
*
25076916 TGGGAATGAACTCCGTATGCTTAGACTGAGGATGAATTCCGTATGCCTAAGTCAACCCACGAAAC
190 TGGGAATGAACTCCGTATGCTTAGACTGAGGATGAATTCCGTATGCCTAAGTCAACCCACAAAAC
** * * *
25076981 GAGTGTGCGGACGCT-TAGCTGACCGAAGAGGCCAGCCAGAGAAGCATAATGTGCAAGCC-AAGG
255 GAAAGTGCGGACGCTCAAGCAG-CCGAAGAGGCCAGCCAGAGAAGCATAATGCGCAAGCCGAA-G
** * *
25077044 ATCAGCCTGGTCC-CTCTCTACGTGCT-ATCGATCCCATTGCC-AGTCC
318 ATCAGCCCAGTCCTC-CTCTACGTGCTGCT-GATCCCATTACCGA-TCC
* * * *
25077090 CGCTACCACAACCCTCGGTCCGACTAGGACTTAGACATGGAATGAGCTCCATATGCCTAAGCCAA
1 CGCTACCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGA-CTCCATATGCCTAAGCCAA
* * * * *
25077155 CCCATGAAACGAGCGTACGGGTGCTCAGTCGGCCGGAGAGGCAGAATGCACAAGCTGAGGATCAG
65 CCCACGAAA-GAACGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGC-GAGGATCAC
** * *
25077220 CTCGGTCCCCCTGCGTGCTGGAGAT--T-TTACAGTCGCAACCCTC-AGTCCGGTTCGATCTTAG
128 CT-GGTCCCCCTGCGTGCTGTCGATCCTGTTAC---CGCAACCCTCGA-TCTGGTTCTATCTTAG
*
25077281 ATTGGGAATGAACTCCGTATGCTTAGACTG
188 ACTGGGAATGAACTCCGTATGCTTAGACTG
25077311 GTGATCCTTG
Statistics
Matches: 490, Mismatches: 78, Indels: 41
0.80 0.13 0.07
Matches are distributed among these distances:
363 3 0.01
364 1 0.00
366 35 0.07
367 312 0.64
368 134 0.27
369 3 0.01
370 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (363 bp):
CGCTACCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGACTCCATATGCCTAAGCCAAC
CCACGAAAGAACGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCACAAGCGAGGATCACCTG
GTCCCCCTGCGTGCTGTCGATCCTGTTACCGCAACCCTCGATCTGGTTCTATCTTAGACTGGGAA
TGAACTCCGTATGCTTAGACTGAGGATGAATTCCGTATGCCTAAGTCAACCCACAAAACGAAAGT
GCGGACGCTCAAGCAGCCGAAGAGGCCAGCCAGAGAAGCATAATGCGCAAGCCGAAGATCAGCCC
AGTCCTCCTCTACGTGCTGCTGATCCCATTACCGATCC
Found at i:25078580 original size:26 final size:26
Alignment explanation
Indices: 25078544--25078596 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25078534 CCAGTTTGAT
25078544 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25078570 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25078596 C
1 C
25078597 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25079633 original size:26 final size:26
Alignment explanation
Indices: 25079604--25079656 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25079594 CTGGTCCAAT
25079604 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25079630 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25079656 C
1 C
25079657 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25080867 original size:26 final size:26
Alignment explanation
Indices: 25080826--25080878 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25080816 ACGGTCTGAT
*
25080826 CTTAGACTGGAAATGAACTCCTTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
25080852 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
25080878 C
1 C
25080879 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:25082150 original size:26 final size:26
Alignment explanation
Indices: 25082109--25082161 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25082099 CCGATCCGAT
*
25082109 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
25082135 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25082161 C
1 C
25082162 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25082442 original size:26 final size:26
Alignment explanation
Indices: 25082413--25082465 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25082403 CCGATTTGAT
*
25082413 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25082439 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25082465 C
1 C
25082466 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25083658 original size:158 final size:155
Alignment explanation
Indices: 25083161--25083658 Score: 434
Period size: 158 Copynumber: 3.2 Consensus size: 155
25083151 TCTCCATATG
*
25083161 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA-C
* * * *
25083226 CGACCGGAGAGGCAAAATGCGCAAGTCGGGGATCAACCCGGTCCCCCCTTACATGCTGTCGATCC
65 CG-CCAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGG--CCCCCTTACGTGCTGTCGATCC
* ** *
25083291 TGCTGCCCCAACCCTCAATCCAGTTTGAT
127 TGCTGCCACAACCCTCGGTCCAGTCTGAT
* * ** * * * * * * *
25083320 CTTACAC-TGGGATGAACTCCGTACACATAAGTCATCCCACAAAATGAGCGTGCGGGCGCTGAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA-C
* * * ** *
25083384 TGCCCGAAGAGGCATAATGCGCAAGCCGGGGATC-GACCC--CCCTTTTGCGTGCTG-CTGATCC
65 CGCCAG-AGAGGCAAAATGCGCAAGCCGGGGATCAG-CCCGGCCCCCTTACGTGCTGTC-GATCC
* * * * **
25083445 CGCTGCCACAACCCTTGGT-CTGACTGGGG
127 TGCTGCCACAACCCTCGGTCCAGTCT-GAT
* * * * *
25083474 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCACC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA-C
* * * *
25083539 CAGTCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGGCCCCCTTACGTGCTGTCGATCCT
65 C-GCCAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCC-GGCCCCCTTACGTGCTGTCGATCCT
* * *
25083604 GCTACCTCAACCCTCGGTCCGGTCTGAT
128 GCTGCCACAACCCTCGGTCCAGTCTGAT
25083632 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
25083659 TTAGACTGGG
Statistics
Matches: 259, Mismatches: 67, Indels: 27
0.73 0.19 0.08
Matches are distributed among these distances:
153 4 0.02
154 37 0.14
155 68 0.26
156 4 0.02
157 4 0.02
158 131 0.51
159 11 0.04
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCACC
GCCAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGGCCCCCTTACGTGCTGTCGATCCTGCT
GCCACAACCCTCGGTCCAGTCTGAT
Found at i:25083661 original size:26 final size:26
Alignment explanation
Indices: 25083632--25083684 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25083622 CCGGTCTGAT
25083632 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25083658 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25083684 C
1 C
25083685 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25084011 original size:26 final size:26
Alignment explanation
Indices: 25083982--25084031 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
25083972 ATCCGATCTG
25083982 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
* *
25084008 AGACTGGGGATGAACTTCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
25084032 CTAAGTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:25084088 original size:347 final size:343
Alignment explanation
Indices: 25083468--25084367 Score: 1044
Period size: 347 Copynumber: 2.6 Consensus size: 343
25083458 CTTGGTCTGA
* * *
25083468 CTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGT
1 CTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGT
* *
25083532 GCTCA-CCCAGTC-AGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGGGCCCCCTTACGTGCT
65 GCTCAGCCGA-TCGA-AGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGGCCCCCTTACGTGCT
* * * * *
25083595 GTCGATCCTGCTACCTCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
128 GCCGATCCTGCTACCTCAACCCTCGATCCGATCCGATCTGAGACTGGGAATGAACTCCGTATGCT
* * **
25083660 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGGGGGTGCTCAGCCA
193 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGCCA
* * * * *
25083725 GCCAGAGAGGCATAATGCGTAAGTC-GAGGATCAGCCTGGTCCCCCTCTGCGTGCTGCCGATTCT
258 GCCAGAGAGGCATAATGCGCAAGTCAG-GGATCAGCCCGGTCCCCCTCTACGTGCTACCGATCCT
* * **
25083789 ACTGCCACAACCTTCGGTCCAG
322 ACAGCCACAACCATCAATCCAG
* * *
25083811 TTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCTAACCCACGAAATGAGCGTGCGGGTG
1 CTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTG
* * * * * * *
25083876 CTTAGTCGATCGAAAAAGCAGAATGCGCAAGCCAGGGATC-GATCC-GGTCCCCTTGCGTGCTGC
66 CTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCAGGGATCAG-CCCGGGCCCCCTTACGTGCTGC
* * *
25083939 CTATCCTGCTGCGGT-AACCCATGATCCGATCCGATCCGATCTGAGACTGGGAATGAACTCCGTA
130 CGATCCTGCTAC-CTCAACCC----T-CGATCCGATCCGATCTGAGACTGGGAATGAACTCCGTA
* * *
25084003 TGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTTAACCCACGAAACAAGTGTGCGGGCACTCA
189 TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCA
* * * *
25084068 GCCGGTCGGAGAGGCATAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCTCTACGTGGTACCGAT
254 GCCAGCCAGAGAGGCATAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGAT
*
25084133 CCTGCAGCCACAACCATCAATCCAG
319 CCTACAGCCACAACCATCAATCCAG
25084158 CTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTG
1 CTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTG
* * * * * ** *
25084223 CTCAGCCGATCGGAGAGGCAGAATACGCAAGTC-GAGGATCGGCCTGATCCCTAC-TACGTGCTG
66 CTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCAG-GGATCAGCCCGGGCCC-CCTTACGTGCTG
* ** * * * ** * * * *
25084286 TCGATCCTGCTGTCGCAAACCTCGATTCGATCTAATCTTAGACTAGGAATGAACTCTGTATGTTT
129 CCGATCCTGCTACCTCAACCCTCGATCCGATCCGATCTGAGACTGGGAATGAACTCCGTATGCTT
25084351 AGACTGGGGATGAACTC
194 AGACTGGGGATGAACTC
25084368 TATACGCCTA
Statistics
Matches: 466, Mismatches: 75, Indels: 32
0.81 0.13 0.06
Matches are distributed among these distances:
342 31 0.07
343 141 0.30
344 5 0.01
346 2 0.00
347 260 0.56
348 26 0.06
349 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (343 bp):
CTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTG
CTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGGCCCCCTTACGTGCTGCC
GATCCTGCTACCTCAACCCTCGATCCGATCCGATCTGAGACTGGGAATGAACTCCGTATGCTTAG
ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGCCAGCC
AGAGAGGCATAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGATCCTACAG
CCACAACCATCAATCCAG
Found at i:25085570 original size:26 final size:26
Alignment explanation
Indices: 25085541--25085593 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25085531 CCGGTTTGAT
25085541 CTTAGAC-TGGGAATAAACTCCGTATG
1 CTTAGACTTGGG-ATAAACTCCGTATG
* *
25085567 CTTAGACTTGGGATGAACTTCGTATG
1 CTTAGACTTGGGATAAACTCCGTATG
25085593 C
1 C
25085594 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTTGGGATAAACTCCGTATG
Found at i:25085945 original size:26 final size:26
Alignment explanation
Indices: 25085909--25085961 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25085899 CCGATCTGAT
25085909 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
* *
25085935 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
25085961 C
1 C
25085962 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:25086063 original size:368 final size:366
Alignment explanation
Indices: 25085363--25086364 Score: 1215
Period size: 368 Copynumber: 2.7 Consensus size: 366
25085353 CCACTGCCAT
* * * *
25085363 AACCCTCGATTCGGCTGGGGCTTAGACATGGAATG-AGCTCCT-TATGCCTAAGCGAACCCCCAA
1 AACCCTCGATCCGGCTGGGGCTTAGACATGGAATGTA-CT-CTGTATGCCTAAGCCAACCCACGA
* * ** * * * * * * *
25085426 AACGGGCATGCGGGCACTCAGCCTGCCGGATAGGCATAATGTGTAGGTTGGGGATCGGC-CTGAT
64 AACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATC-GCTC-GAT
* * * * * *
25085490 CTCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCAATCCGGTTTGATCTTAGACTGGGAAT
127 CCCCCCTGCGTGCTATCGATCCTGCTATCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAAT
* * * *
25085555 AAACTCCGTATGCTTAGACTTGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTG
192 GAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGCGTG
* * * ** *
25085620 CGAGCACTCAGCCGGTCGGAAAGGCCGACCGTAGAGGCATAATGTGCAAGCTGGGGATCAGCCTG
257 CGGGCACTCAGCCGGTCGGAAAGGCCGACCGTAGAGGCATAATGCGAAAGCTAAGGATCAGCCCG
* * * *
25085685 GTCGCCTTCTGCGTGCCACCGATCCCGTTGCTGGTCCTGCTACCAC
322 ATCCCCTTCTGCATGCCACCGAT-CCGTTGCCGGTCCTGCTACCAC
* *
25085731 AACCCTCGGTCCGGCTGGGGCTTAAACATGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAA
1 AACCCTCGATCCGGCTGGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAA
* * *
25085796 CGAGCGCGCGGGTGCTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGATCCC
66 CGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATC-GCTCGATCCC
* * *
25085861 CCCTACGTGCTACCGATCCTGCTATCGCAACCCTCGACCCGATCTGATCTTAGACTGGGAATGAA
130 CCCTGCGTGCTATCGATCCTGCTATCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAA
* * *
25085926 CACCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGCATGCGG
195 CTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGCGTGCGG
* * * * * * *
25085991 GCGCTCAGCTGGTCGGAGAGGTCGGCCAG-AGAGGCATAATGCGTAAATC-AAGGATTAGCCCGA
260 GCACTCAGCCGGTCGGAAAGGCCGACC-GTAGAGGCATAATGCG-AAAGCTAAGGATCAGCCCGA
* * * *
25086054 TCCCCTTCTGCATGCTACCGATCCTTTGCCGGTCCTGCTGCCAT
323 TCCCCTTCTGCATGCCACCGATCCGTTGCCGGTCCTGCTACCAC
* * ** * * *
25086098 AAACCTCGATCCGACTGGGGCTTAGATGTGGAATTTACTTTGTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGATCCGGCTGGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAA
* * * *
25086163 CGAGCGTACGGGTGCTCTGCCAGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACTCGGTCCC
66 CGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCG-CTCGATCCC
* *
25086228 CCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAA
130 CCCTGCGTGCTATCGATCCTGCTATCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAA
* * *
25086293 CTCCGTATGCTTAGACTAGGGATGAACTCCCTATGCCTAAGC-CAACTCACGAAACGAGCGTGCG
195 CTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAA-CTCAACCCACGAAATGAGCGTGCG
25086357 GGCACTCA
259 GGCACTCA
25086365 ACCGACCGAA
Statistics
Matches: 542, Mismatches: 85, Indels: 15
0.84 0.13 0.02
Matches are distributed among these distances:
366 1 0.00
367 255 0.47
368 280 0.52
369 6 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (366 bp):
AACCCTCGATCCGGCTGGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAA
CGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGCTCGATCCCC
CCTGCGTGCTATCGATCCTGCTATCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGCGTGCGGG
CACTCAGCCGGTCGGAAAGGCCGACCGTAGAGGCATAATGCGAAAGCTAAGGATCAGCCCGATCC
CCTTCTGCATGCCACCGATCCGTTGCCGGTCCTGCTACCAC
Found at i:25086263 original size:367 final size:368
Alignment explanation
Indices: 25085487--25086364 Score: 1163
Period size: 367 Copynumber: 2.4 Consensus size: 368
25085477 GGATCGGCCT
* * * * * *
25085487 GATCTCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCAATCCGGTTTGATCTTAGACTGGG
1 GATCCCCCCTGCGTGCTATCGATCCTGCTATCGCAACCCTCGATCCGATCTGATCTTAGACTGGG
* * * *
25085552 AATAAACTCCGTATGCTTAGACTTGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGC
66 AATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGC
* * * **
25085617 GTGCGAGCACTCAGCCGGTCGGAAAGGCCGACCGTAGAGGCATAATGTGCAAGCTGGGGATCAGC
131 GTGCGGGCACTCAGCCGGTCGGAAAGGCCGACCGTAGAGGCATAATGCGAAAGCTAAGGATCAGC
* * * * * * * *
25085682 CTGGTCGCCTTCTGCGTGCCACCGATCCCGTTGCTGGTCCTGCTACCACAACCCTCGGTCCGGCT
196 CCGATCCCCTTCTGCATGCCACCGATCCCGTTGCCGGTCCTGCTACCACAAACCTCGATCCGACT
*
25085747 GGGGCTTAAACATGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGTGCT
261 GGGGCTTAAACATGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGCACGGGTGCT
*
25085812 CAGCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTC
326 CAGCCAACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTC
* * *
25085855 GATCCCCCCTACGTGCTACCGATCCTGCTATCGCAACCCTCGACCCGATCTGATCTTAGACTGGG
1 GATCCCCCCTGCGTGCTATCGATCCTGCTATCGCAACCCTCGATCCGATCTGATCTTAGACTGGG
* *
25085920 AATGAACACCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGC
66 AATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGC
* * * * * * * *
25085985 ATGCGGGCGCTCAGCTGGTCGGAGAGGTCGGCCAG-AGAGGCATAATGCGTAAATC-AAGGATTA
131 GTGCGGGCACTCAGCCGGTCGGAAAGGCCGACC-GTAGAGGCATAATGCG-AAAGCTAAGGATCA
* * * *
25086048 GCCCGATCCCCTTCTGCATGCTACCGAT-CCTTTGCCGGTCCTGCTGCCATAAACCTCGATCCGA
194 GCCCGATCCCCTTCTGCATGCCACCGATCCCGTTGCCGGTCCTGCTACCACAAACCTCGATCCGA
* ** * * * *
25086112 CTGGGGCTTAGATGTGGAATTTACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTG
259 CTGGGGCTTAAACATGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGCACGGGTG
* * *
25086177 CTCTGCCAGCCAGAGAGGCAGAATGCGCAAGTCGGGGATC-GACTC
324 CTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CTC
* * *
25086222 GGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGG
1 GATCCCCCCTGCGTGCTATCGATCCTGCTATCGCAACCCTCGATCCGATCTGATCTTAGACTGGG
* * *
25086287 AATGAACTCCGTATGCTTAGACTAGGGATGAACTCCCTATGCCTAAGC-CAACTCACGAAACGAG
66 AATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAA-CTCAACCCACGAAATGAG
25086351 CGTGCGGGCACTCA
130 CGTGCGGGCACTCA
25086365 ACCGACCGAA
Statistics
Matches: 442, Mismatches: 64, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
366 1 0.00
367 253 0.57
368 184 0.42
369 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (368 bp):
GATCCCCCCTGCGTGCTATCGATCCTGCTATCGCAACCCTCGATCCGATCTGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGC
GTGCGGGCACTCAGCCGGTCGGAAAGGCCGACCGTAGAGGCATAATGCGAAAGCTAAGGATCAGC
CCGATCCCCTTCTGCATGCCACCGATCCCGTTGCCGGTCCTGCTACCACAAACCTCGATCCGACT
GGGGCTTAAACATGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGCACGGGTGCT
CAGCCAACCAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTC
Found at i:25086305 original size:26 final size:26
Alignment explanation
Indices: 25086276--25086328 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25086266 CCGATCTGAT
*
25086276 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCCTATG
25086302 CTTAGACTAGGGATGAACTCCCTATG
1 CTTAGACTAGGGATGAACTCCCTATG
25086328 C
1 C
25086329 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCCTATG
Found at i:25086485 original size:185 final size:184
Alignment explanation
Indices: 25086140--25086487 Score: 486
Period size: 185 Copynumber: 1.9 Consensus size: 184
25086130 ATTTACTTTG
* ** **
25086140 TATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCTGCCAGCCAGAGAGGCAGAATGCGC
1 TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCAGCCAGAGAGGCAGAATGCGC
* * * * *
25086205 AAGTCGGGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGA
66 AAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTACTACCACAACCCTCGATCCGA
*
25086270 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCC
131 TCTGATCTTAGACTGGGAATGAAATCCGTATGCTTAGACTAGGGATGAACTCCC
* *
25086324 TATGCCTAAGCCAACTCACGAAACGAGCGTGCGGGCACTCAACC-GACC-GAAGAGGCAGAATGC
1 TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCAG-CCAG-AGAGGCAGAATGC
* * **
25086387 GTAAG-CTGGGGATCGACCCGATCCCCCCCTGCGTGCTATCGATCCTATTGTCACAACCCTCGAT
64 GCAAGTC-GGGGATCGACCCGAT-CCCCCCTGCGTGCTATCGATCCTACTACCACAACCCTCGAT
25086451 CCGATCTGATCTTAGACTGGGAATGAAATCCGTATGC
127 CCGATCTGATCTTAGACTGGGAATGAAATCCGTATGC
25086488 ATAAGTCAAC
Statistics
Matches: 143, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
183 3 0.02
184 69 0.48
185 71 0.50
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (184 bp):
TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAACCAGCCAGAGAGGCAGAATGCGC
AAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTACTACCACAACCCTCGATCCGA
TCTGATCTTAGACTGGGAATGAAATCCGTATGCTTAGACTAGGGATGAACTCCC
Found at i:25086603 original size:158 final size:157
Alignment explanation
Indices: 25086302--25086803 Score: 537
Period size: 158 Copynumber: 3.2 Consensus size: 157
25086292 ACTCCGTATG
* *
25086302 CTTAGACTAGGG-ATGAACTCCCTATGCCTAAGCCAACTCACGAAACGAGCGTGCGGGCACTCAA
1 CTTAGACT-GGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* ** *
25086366 CCGACCGAAGAGGCAGAATGCGTAAGCTGGGGATCGACCCGATCCCCCCCTGCGTGCTATCGATC
65 CAGA-CGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGAT-CCCCCCTGCGTGCTATCGATC
** *
25086431 CTATTGTCACAACCCTCGATCCGATCTGAT
128 CTGCTGTCACAACCCTCGGTCCGATCTGAT
* * * * * **
25086461 CTTAGACTGGGAATGAAATCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGT
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * *
25086526 AGATCGAAGA-GCATAATGCACAAGCCGGGGATCGACCCGGTCCCCCTCTCCGTGCTGTCGATCC
66 AGA-CGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTATCGATCC
* * **
25086590 CGCTGCCACAACCCTCGGTCCGA-CTGGGG
129 TGCTGTCACAACCCTCGGTCCGATCT-GAT
* * *
25086619 CTTCGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTACGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* * * * * * *
25086682 ACGGACAGAAGAGGTAGAATGCCCAAGTCGGGGATCGACCCGATCCCCCCTGCATGCTACCAATC
64 ACAGAC-GAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATC
* * * *
25086747 TTGCTGTCACAACGCTCGGTCCGTTATGAT
128 CTGCTGTCACAACCCTCGGTCCGATCTGAT
*
25086777 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCCTATGC
25086804 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 57, Indels: 19
0.78 0.16 0.05
Matches are distributed among these distances:
157 10 0.04
158 174 0.63
159 93 0.34
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
AGACGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTG
CTGTCACAACCCTCGGTCCGATCTGAT
Found at i:25086807 original size:26 final size:26
Alignment explanation
Indices: 25086777--25086829 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25086767 CCGTTATGAT
* *
25086777 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
25086803 CTTAGACTGGGGATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
25086829 C
1 C
25086830 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:25087179 original size:26 final size:26
Alignment explanation
Indices: 25087143--25087195 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25087133 TCGGTTCGAT
25087143 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25087169 CTTAGACTGGGGATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25087195 C
1 C
25087196 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25087613 original size:367 final size:363
Alignment explanation
Indices: 25086583--25087613 Score: 1153
Period size: 367 Copynumber: 2.8 Consensus size: 363
25086573 CTCCGTGCTG
* * *
25086583 TCGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTCGACATGGAATGAGCTCCCTATGCCT
1 TCGATCCTGCTGCCACAACCCTCGGTCCGACT-GGGCTTAGACATGGAATGA-CTCCGTATGCCT
* * * * *
25086648 AAGCCAACCCACGAAACAGGCGTACGGGCGCTCA-ACGGACAGAAGAGGTAGAATGCCCAAGTCG
64 AAGCCAACCCACGAAA-AGGCGTGCGGGCGCTCAGTC-GACGGAA-AGGTAGAATGCCCAAGCCA
* * * * * * * * * *
25086712 GGGATCGACCCGATCCCCCCTGCATGCTACCAATCTTGCTGTCACAACGCTCGGTCCGTTATGAT
126 GGGATCGGCTCGATCCCCCCTGCGTGCTACCGATCCTGCTATCGCAACCCTCGATCCGGT-TGAT
* *
25086777 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCATATGCCTAAGTCAACCC
190 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
25086842 ACGAAACGAGCATACGGGCGCTCAGTCGGCGGGAGA-GCCGACCGAAGAGACATAATGCGTAAGT
255 ACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCCGACCAAAGAGACATAATGCGCAAGT
* * *
25086906 CGGGGATCAACCTGATCCCCCTCTGCGTGCTGCTGATCCCACTG
320 CGGGGATCAACCCGATCCCCCTCTACGTGCTGCTGATCCCACTA
* * * *
25086950 TCGATCCTGCTGCCATAACCCTCGGTTCGGCTGGGTCTTAGACATGGAATGTACTCTGTATGCCT
1 TCGATCCTGCTGCCACAACCCTCGGTCCGACTGGG-CTTAGACATGGAATG-ACTCCGTATGCCT
* * * *
25087015 AAGCCAACCCACGAAATGTGCGTGCGGGCACTCAGTCGGTCGGAGAGGTAGAATGCCCAAGCCAG
64 AAGCCAACCCACGAAAAG-GCGTGCGGGCGCTCAGTC-GACGGAAAGGTAGAATGCCCAAGCCAG
* * ** * * *
25087080 GGATCAG-TCTGGT-CCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGATTCGGTTCGAT
127 GGATCGGCTC-GATCCCCCCTGCGTGCTACCGATCCTGCTATCGCAACCCTCGATCCGGTT-GAT
*
25087143 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGTACTCCGTATGCCTAAGTCAACCC
190 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
25087208 ATGAAACGAGCGTGCGGGTGCTCA-ACTGATCGGAGAGGCCGATCAAAGAGGCATAATGCGCAAG
255 ACGAAACGAGCGTGCGGGCGCTCAGTC-GACCGGAGAGGCCGACCAAAGAGACATAATGCGCAAG
* * * * * *
25087272 -CTGGGGATTAGCCCGGTCCCTCTCTACGTGCTG-TCGATCTCGCTA
319 TC-GGGGATCAACCCGATCCCCCTCTACGTGCTGCT-GATCCCACTA
* * * *
25087317 TCGATCCTACTGCTACAACCCTCGGTCCGATTAGGG-TTAGACGTGGAATGCACTCCGTATGCCT
1 TCGATCCTGCTGCCACAACCCTCGGTCCGACT-GGGCTTAGACATGGAATG-ACTCCGTATGCCT
* * * * *
25087381 AAGCCAACCCACGAAAAGAACGTGCAGGTGCTCAGTCGACCGGAAAGGCAGAAT-CCGTAAGCCA
64 AAGCCAACCCACGAAAAG-GCGTGCGGGCGCTCAGTCGA-CGGAAAGGTAGAATGCC-CAAGCCA
*
25087445 GGGATCGGCTCGATCCCCCCTACGTGCTACCGATCCTGCTATCGCAACCCTCGATCCGGTCTGAT
126 GGGATCGGCTCGATCCCCCCTGCGTGCTACCGATCCTGCTATCGCAACCCTCGATCCGGT-TGAT
* * * * *
25087510 CTTAGATTGGGAATGAACTCCATATGCTTAGAATGGGGATGAACTTCGTATGCCTAAGTCCACCC
190 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
*
25087575 ACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGAGGC
255 ACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGC
25087614 AGGATGCGCA
Statistics
Matches: 552, Mismatches: 95, Indels: 34
0.81 0.14 0.05
Matches are distributed among these distances:
365 5 0.01
366 213 0.39
367 322 0.58
368 12 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (363 bp):
TCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGCTTAGACATGGAATGACTCCGTATGCCTAA
GCCAACCCACGAAAAGGCGTGCGGGCGCTCAGTCGACGGAAAGGTAGAATGCCCAAGCCAGGGAT
CGGCTCGATCCCCCCTGCGTGCTACCGATCCTGCTATCGCAACCCTCGATCCGGTTGATCTTAGA
CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCCGACCAAAGAGACATAATGCGCAAGTCGGGGA
TCAACCCGATCCCCCTCTACGTGCTGCTGATCCCACTA
Found at i:25088784 original size:26 final size:26
Alignment explanation
Indices: 25088733--25088785 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25088723 CCGGTCCAAT
* *
25088733 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
25088759 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
25088785 C
1 C
25088786 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:25088822 original size:367 final size:366
Alignment explanation
Indices: 25088142--25088822 Score: 882
Period size: 366 Copynumber: 1.9 Consensus size: 366
25088132 ACAGGCTCTT
* * * * * *
25088142 GGTCCCCCTCTGCGTGCTGCCAATCCCGCTGCTGGTCCTGTTGCCACAACCCTCAGTCCGACTGG
1 GGTCCCCCTCTGCGTGCTGACAATCCCGCTACCGATCCTGCTACCACAACCCTCAGTCCGACTGG
* * * * *
25088207 CGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCA
66 CGCTTAGACGTGGAATATACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCACTCA
* * ** * **
25088272 GTCGATCGGAGAGGCAAAATGTGCAAGCTTAGGATCAGCCCGATCCCCCTGCGTGCTACCGATCC
131 GTCGATCGAAAAGGCAAAATGCACAAACCGAGGATCAGCCCGATCCCCCTGCGTGCTACCGATCC
* * ** *
25088337 GGCTGCTGCAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGG
196 GGCTACCGCAACCCTCGATCCAGTCCAATCTTAGACTAGGAATGAACTCTATATGCTTAGACTGG
* * * *
25088402 GGATGAACTTCGTATGCCTAAGTCAACCTATGAAACGAGCGTGCAGGCGCTCAGTCGGTCGGAGA
261 GGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGTCGGAGA
25088467 GGCCAGTCGGAGAGGCATAATACGCAACCAGGGATCAGCCC
326 GGCCAGTCGGAGAGGCATAATACGCAACCAGGGATCAGCCC
* * * * *
25088508 GGTCCCCCTCTGCGTGCTGACGATCCCTCTACCGATCCTGCTACCACAACCCTCGGTCTGGCTGG
1 GGTCCCCCTCTGCGTGCTGACAATCCCGCTACCGATCCTGCTACCACAACCCTCAGTCCGACTGG
* * * *
25088573 GGCTTAGACGTGGAATATACTACGTATGCCTAAGCCAACCCACGGAATGAGCGTGCGGCCGCTCA
66 CGCTTAGACGTGGAATATACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCACTCA
* * * * * *
25088638 GTCGA-CTGAAAAGGCAGAATGCATAAACCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGAT
131 GTCGATC-GAAAAGGCAAAATGCACAAACCGAGGATCAGCCCGAT-CCCCCTGCGTGCTACCGAT
* * * *
25088702 CCTGCTACCGTAACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACT-TCGTATGCTTAGAC
194 CCGGCTACCGCAACCCTCGATCCAGTCCAATCTTAGACTAGGAATGAACTCT-ATATGCTTAGAC
*
25088766 TGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGGGTGC-GGTCGCTCAG
258 TGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGG-CGCTCAG
25088823 CCGACTAGAG
Statistics
Matches: 264, Mismatches: 47, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
365 1 0.00
366 143 0.54
367 120 0.45
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (366 bp):
GGTCCCCCTCTGCGTGCTGACAATCCCGCTACCGATCCTGCTACCACAACCCTCAGTCCGACTGG
CGCTTAGACGTGGAATATACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCCACTCA
GTCGATCGAAAAGGCAAAATGCACAAACCGAGGATCAGCCCGATCCCCCTGCGTGCTACCGATCC
GGCTACCGCAACCCTCGATCCAGTCCAATCTTAGACTAGGAATGAACTCTATATGCTTAGACTGG
GGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGTCGGAGA
GGCCAGTCGGAGAGGCATAATACGCAACCAGGGATCAGCCC
Found at i:25089898 original size:159 final size:154
Alignment explanation
Indices: 25089502--25089909 Score: 349
Period size: 159 Copynumber: 2.6 Consensus size: 154
25089492 AGCTCTGTAT
* ** * *
25089502 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTCGCTCAA
1 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCATGAAA-GAGAGTGCGGT-GCTC-A
* * *
25089567 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
63 GCGGCC-GAAAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACATGCTGTCGATCC
** ** **
25089632 TATGGCAGCAACCATCGGTCTGGTCTGA
127 TATACCAGCAACCATCAATCCAGTCTGA
* ** * * * *
25089660 TCTTAGAC-TGGGAATGAAG-TCCGTATGTATAAGTCAACCCATGAAACGAGCGCAT-AGGCGCT
1 GCTTAGACAT-GGAATG-AGCTCCGTATGCCTAAGCCAACCCATGAAA-GAGAG--TGCGGTGCT
* * *
25089722 GAGCAGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCTCTCTACATGCTGTCG
61 CAGC-GGCCGAA-AGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCC-CCCTACATGCTGTCG
* * * *
25089787 GTTCTGCTACCA-CAACCCTCAATCCAG-CTGA
123 ATCCT-ATACCAGCAACCATCAATCCAGTCTGA
* *
25089818 GGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAATGGGAGTGCGGGTGCTCA
1 -GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCATGAAA-GAGAGTGC-GGTGCTCA
25089883 GTCGGCCAGAAAGGCAGAATGCGCAAG
63 G-CGGCC-GAAAGGCAGAATGCGCAAG
25089910 TTGGGCATCG
Statistics
Matches: 197, Mismatches: 38, Indels: 29
0.75 0.14 0.11
Matches are distributed among these distances:
157 6 0.03
158 88 0.45
159 94 0.48
160 9 0.05
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.18
Consensus pattern (154 bp):
GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCATGAAAGAGAGTGCGGTGCTCAGCG
GCCGAAAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACATGCTGTCGATCCTATA
CCAGCAACCATCAATCCAGTCTGA
Found at i:25090427 original size:26 final size:26
Alignment explanation
Indices: 25090391--25090441 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
25090381 TGACTTAGGG
25090391 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
25090417 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
25090442 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:25090874 original size:158 final size:158
Alignment explanation
Indices: 25090415--25090915 Score: 571
Period size: 159 Copynumber: 3.2 Consensus size: 158
25090405 CCCAGTCTAA
* * * **
25090415 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCTGCAAGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * *
25090480 GCACGC-TGGGGGATCAGGTCGATCCTCGGCATGCGCATTCTACCTCTCCGGCCGACTGAGTGCC
66 GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGTGCC
* *
25090544 CGCACGCCCGTTTCGTGAGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * *
25090572 GCATAGGGAGTTCATT-CCATGTATAAGCCCCA-ACTGGACTGAGGGTTGTGACAGCGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTGTGGCAGCAGGATC-G
* * * * * ** *
25090634 ACAGCACACAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGTTCAG
63 ACAGCACGCAG-GGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAG
* * * * *
25090699 TGCCCGTATGCTTGTTTCGTGGGTTGACTTAT
127 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
25090731 GCATACAGAGTTCATTCCCAGTCTCAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
* *
25090796 GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCC
66 GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGTGCC
25090861 CGCACGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
25090889 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
25090916 CATACGGAGT
Statistics
Matches: 274, Mismatches: 61, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
156 4 0.01
157 52 0.19
158 96 0.35
159 118 0.43
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGTGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:25091648 original size:26 final size:26
Alignment explanation
Indices: 25091612--25091664 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25091602 GTTAACTTAG
*
25091612 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
25091638 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
25091664 G
1 G
25091665 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:25092118 original size:158 final size:157
Alignment explanation
Indices: 25091638--25092139 Score: 469
Period size: 158 Copynumber: 3.2 Consensus size: 157
25091628 CCCAGTCTAA
* * *
25091638 GCATACGGAGTTCATTCCCA-ATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGTAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * *
25091702 AGCACGCA-GGGGGAACTGGGTCGATCCTCGGTTTACGCATTCTGCCTCTCCGGCCGGTTGAGCG
65 AACACG-AGGGGGGATC-AGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
* * *
25091766 CCTGCACGCCCGTTTCATGGGTTGGCTTTG
128 CCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
25091796 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGC-GAGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGCAGCAG-GATCGA
* * * * * *
25091859 CAGCATACAGAGGGGGAAT-AGGTCGATCCTCGGCTTGCGCATTATGCATCTTCGGCCGGCTCAG
64 CA--ACAC-GAGGGGGGATCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
* * * * * *
25091923 TGCCCGCACGCTCATTTTG-GGGCTTGACTTAT
126 CGCCTGCACGCTCGTTTCGTGGG-TTGGCTTAG
** * * **
25091955 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGACCGGATCGAGGGTTACAACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
** * * * *
25092019 AACACGTAGGGGGGATCAGGTTTATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGC
65 AACACG-AGGGGGGATCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
25092084 CTGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CTGCACGCTCGTTTCGTGGGTTGGCTTAG
25092113 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
25092140 CATACGGAGT
Statistics
Matches: 267, Mismatches: 62, Indels: 30
0.74 0.17 0.08
Matches are distributed among these distances:
156 1 0.00
157 18 0.07
158 129 0.48
159 106 0.40
160 7 0.03
161 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
ACACGAGGGGGGATCAGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCT
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:25092149 original size:26 final size:26
Alignment explanation
Indices: 25092113--25092191 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
25092103 GTTGGCTTAG
25092113 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
25092139 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
* *
25092165 GCATACGAAGTTCAGTCCCA-GTCTAA
1 GCATACGGAGTTCA-TTCCATGTCTAA
25092191 G
1 G
25092192 ATTTTGAGCC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 45 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:25094101 original size:26 final size:26
Alignment explanation
Indices: 25094071--25094123 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25094061 GTTGACTTAG
* *
25094071 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATAAGAAGTTCATCCCAAGTCTAA
* *
25094097 GCATAAGGAGTTCATTCCAAGTCTAA
1 GCATAAGAAGTTCATCCCAAGTCTAA
25094123 G
1 G
25094124 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCAAGTCTAA
Found at i:25094397 original size:159 final size:158
Alignment explanation
Indices: 25094160--25094517 Score: 380
Period size: 159 Copynumber: 2.3 Consensus size: 158
25094150 TGGGATTGGC
* ** * * * * * * * *
25094160 AGCACGCAGGAGGGATCGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCG-GTCGGCTGAGCA
1 AGCACGCAGGGGGGATCGGATCGATCCCCAGCTTGCGCATTATGCCTCTCTGACT-GGCTCAGCA
* * * * *
25094224 CCCGTACGCCCATTTCGTGGGTTGGCTTACACATAGGGAGTTCATTCC-ATGTTTAAGCCCCAAC
65 CCCGCACGCCCATTTCGTGGGTTGACTTACACATAGGGAGTTCATTCCTA-GTCTAAGACCAAAC
* * ** *
25094288 CAAACTGAGGGTTGTGGTAGC-GAGACCGAT
129 CAAACCGAGGGCTACGGCAGCAG-GACCGAT
25094318 AGCACGCAGAGGGGGATCGGATCGATCCCCAGCTTGCGCATTATGCCTCTCTGACTGGCTCAGCA
1 AGCACGCAG-GGGGGATCGGATCGATCCCCAGCTTGCGCATTATGCCTCTCTGACTGGCTCAGCA
* ** * * *
25094383 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAAATC
65 CCCGCACGCCCATTTCGTGGGTTGACTTACACATAGGGAGTTCATTCCTAGTCTAAGACCAAACC
*
25094448 AAACCGAGGGCTACGGCAGCAGGATCGAT
130 AAACCGAGGGCTACGGCAGCAGGACCGAT
* * *
25094477 AGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGTGCATT
1 AGCACGCAGGGGGGATCGGATCGATCCCCAGCTTGCGCATT
25094518 CTAAGCATAT
Statistics
Matches: 165, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
158 38 0.23
159 124 0.75
160 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
AGCACGCAGGGGGGATCGGATCGATCCCCAGCTTGCGCATTATGCCTCTCTGACTGGCTCAGCAC
CCGCACGCCCATTTCGTGGGTTGACTTACACATAGGGAGTTCATTCCTAGTCTAAGACCAAACCA
AACCGAGGGCTACGGCAGCAGGACCGAT
Found at i:25094938 original size:26 final size:26
Alignment explanation
Indices: 25094908--25094960 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25094898 GTTGACTTAG
*
25094908 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
25094934 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
25094960 G
1 G
25094961 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:25095295 original size:367 final size:355
Alignment explanation
Indices: 25094629--25095511 Score: 981
Period size: 367 Copynumber: 2.5 Consensus size: 355
25094619 AGCAGGACCA
** *
25094629 ACAGTAGGATCGGTAGCATGCAGGGGGGATCAGGTCGATCCTTGGCTTACGCATTCT-ACCTCTC
1 ACAGTAGGATCGACAGCATGCAGGGGGGATCAGGTCGATCCCTGGCTTACGCATTCTGA-CTCTC
* * * * * *
25094693 TGGCCGGTTGAGTGCCCACACG-CTCCTTTCATGGGTTGGCTTTGGCATACGGAGTTCATTCCAT
65 TGGCTGGCTGAGCGCCCACACGCCT-GTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCAT
* * * * *
25094757 GTCTAAGCCCCAGCCGAATCGAGGGTTGTGGCAGCAGGATTGGTAGCGAGACTGGCAGCACGTAG
129 GTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATTGATAACGAGACTGGCAGCACGCAG
** **
25094822 AAGGGGATCGGGCTGATCCTCAACTTGTGCATTATACCTCTCCGGTCGGCTGAGCGCCTGCACGC
194 AAGGGGATCAAGCTGATCCTCAACTTACGCATTATACCTCTCCGGTCGGCTGAGCGCCTGCACGC
25094887 TCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCC
259 TCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCC
* **
25094952 CAGTCTAAGATCAG-ACCGAAGTGAGGGTTACG
324 CAGTCTAAGAT-AGAACCAAACCGAGGGTTACG
* * * * *
25094984 ACAGTGGGATCGCCAGCATGTAGGGGGGATC-GGATCGATCCCTGACTTACGCATTCTGACTTTC
1 ACAGTAGGATCGACAGCATGCAGGGGGGATCAGG-TCGATCCCTGGCTTACGCATTCTGACTCTC
* ** *
25095048 CGGCTGGCTGAGCGCCCGTACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
65 TGGCTGGCTGAGCGCCCACACGCCTGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATG
* * * * *
25095113 TCTAAGCCCCAGTCGGACCGACGGTTGTGGCAGTAGGATTGATAATGGGA-TCGGCAGCACGCAG
130 TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATTGATAACGAGACT-GGCAGCACGCAG
* *
25095177 -AGAGGGATCAAGCTGATCC-CAATTTACGCATTATGCCTCGTCGATCGGCCTCTCCGATCGACT
194 AAG-GGGATCAAGCTGATCCTCAACTTACGCATTATACCTC-TC---CGG----T-CG---G-CT
** * * * *
25095240 GAGCGCCTTTACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCGT
245 GAGCGCCTGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
* * *
25095305 ACGGAGTTCATTCCCAGTCTAAGATTGAATCAAACCGAGGGTTACG
310 ACAGAGTTCATTCCCAGTCTAAGATAGAACCAAACCGAGGGTTACG
** * * ** * * * * *
25095351 GTAGCAGGATAGACAGCACCCAGGAGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCT
1 ACAGTAGGATCGACAGCATGCAGGGGGGATCAGGTCGATCCCTGGCTTACGCATTCTGACTCTCT
* * * *
25095416 GG-TCGGCTGAGCACCCACACACCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATG
66 GGCT-GGCTGAGCGCCCACACGCCTGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATG
25095480 TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCA
130 TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCA
25095512 ACGAGGCTGA
Statistics
Matches: 437, Mismatches: 70, Indels: 30
0.81 0.13 0.06
Matches are distributed among these distances:
354 21 0.05
355 173 0.40
356 3 0.01
358 3 0.01
362 1 0.00
363 2 0.00
366 3 0.01
367 229 0.52
368 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (355 bp):
ACAGTAGGATCGACAGCATGCAGGGGGGATCAGGTCGATCCCTGGCTTACGCATTCTGACTCTCT
GGCTGGCTGAGCGCCCACACGCCTGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGT
CTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGATTGATAACGAGACTGGCAGCACGCAGAA
GGGGATCAAGCTGATCCTCAACTTACGCATTATACCTCTCCGGTCGGCTGAGCGCCTGCACGCTC
GTTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCA
GTCTAAGATAGAACCAAACCGAGGGTTACG
Found at i:25095307 original size:26 final size:26
Alignment explanation
Indices: 25095278--25095327 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
25095268 GACTTAGGCA
25095278 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
*
25095304 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
25095328 ATTGAATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Found at i:25095820 original size:26 final size:26
Alignment explanation
Indices: 25095772--25095825 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
25095762 GTTGACTTAG
* *
25095772 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
* *
25095798 GCATACAGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
25095824 GC
1 GC
25095826 TCGAATCAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:25096296 original size:498 final size:497
Alignment explanation
Indices: 25095257--25096354 Score: 1355
Period size: 498 Copynumber: 2.2 Consensus size: 497
25095247 TTTACGTTCG
* *
25095257 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCGTACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
* * * *
25095322 TCTAAGATTGAATCAAACCGAGGGTTACGGTAGCAGGATAGACAGCACCCAGGAGGGATCAGGCC
66 TCTAAGATCGAATCAGACCGAGGGTTACAGTAGCAGGATAGACAACACCCAGGAGGGATCAGGCC
* * * * *
25095387 GATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCACCCACACACCCGTTTCGTGGGTT
131 GATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCCACACACCCGTTTCATGGGTT
* *
25095452 GGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACGAG
196 GGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAACGAG
* * * *
25095517 GCTGATAGCATGCAGAGAGGGACCGAGCCGATCGCCAGCTTGCGCATTATGCCTCGCTGGCTAGC
261 GCCGATAGCATGCAGAGAGGGACCGAGCCGATCACCAGCTTGCGCATTATGCCTCGCCGGCCAGC
** * * *
25095582 TCAGTGCCCGAACGCTCGTTTCATGGGTTGTCTTCGGCATACGGAGCTCATTCCCAATTTAAGAT
326 TCAGCACCCGAACGCTCGTTTCATGGGTTGTCTTAGGCATACGAAGCTCATTCCCAATCTAAGAT
** * * * *
25095647 TGGATCAAAGATTACGGCACCAGGATCGACAGTACACAGGATGGGACCGGGCCGACCCCCAGCTT
391 CAGATCAAAGATTACGACACCAGGATCAACAGCACACAGGAGGGGACCGGGCCGACCCCCAGCTT
* ** *
25095712 GCGCATTCTGCCTCTCCGACCGACTAAGCGTCCGCACACTCG
456 GCGCATTCTACCTCTCCGACCGACTAAGCACCCGCACACTCA
**
25095754 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCATAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
* * * *
25095819 TCTAAGCTCGAATCAGACCGAGGGTTACAGTAGTAGGATCA-ACAACACCTAGGGGGGATC-GGA
66 TCTAAGATCGAATCAGACCGAGGGTTACAGTAGCAGGAT-AGACAACACCCAGGAGGGATCAGG-
* * * **
25095882 CCGATCCCCGACTTACGCATTCTGCCTCTCCGATTGGCTGAGCGCCCACACGCTTGTTTCATGGG
129 CCGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCCACACACCCGTTTCATGGG
* * * *
25095947 TTGGGTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGTCAGC
194 TTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGG-CAAC
* * ** **
25096012 G-GGACCGGTAGCATGCAGA-AGGGGATCG-GACCGATCACTGGCTTGCGCATTATGCCTTTCCG
258 GAGG-CCGATAGCATGCAGAGA-GGGACCGAG-CCGATCACCAGCTTGCGCATTATGCCTCGCCG
* ** * *
25096074 GCCAGCTCAGCACCC-AGACGTTCGTTTTGTGGTTTGTCTTAGGCATACGAAGCTCATTCCCAGT
320 GCCAGCTCAGCACCCGA-ACGCTCGTTTCATGGGTTGTCTTAGGCATACGAAGCTCATTCCCAAT
* * ** * * ** ** *
25096138 CTAAGATCAGATCGAGGATTGTGATAGCAGGATCAACAGCATGCAGGAGGGGACCGGGTTGATCC
384 CTAAGATCAGATCAAAGATTACGACACCAGGATCAACAGCACACAGGAGGGGACCGGGCCGACCC
** * * * *
25096203 CTGGCTTGTGCATTCTACCTCTCCGGCTGACTGAGCACCCGCACACTCA
449 CCAGCTTGCGCATTCTACCTCTCCGACCGACTAAGCACCCGCACACTCA
* *
25096252 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCA
* * *
25096316 ATCTAAGATCGAATCAGACCGAGGGTTACGGCAGCAGGA
65 GTCTAAGATCGAATCAGACCGAGGGTTACAGTAGCAGGA
25096355 CCAGCAACAG
Statistics
Matches: 509, Mismatches: 84, Indels: 15
0.84 0.14 0.02
Matches are distributed among these distances:
496 2 0.00
497 229 0.45
498 278 0.55
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (497 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
TCTAAGATCGAATCAGACCGAGGGTTACAGTAGCAGGATAGACAACACCCAGGAGGGATCAGGCC
GATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCCACACACCCGTTTCATGGGTT
GGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAACGAG
GCCGATAGCATGCAGAGAGGGACCGAGCCGATCACCAGCTTGCGCATTATGCCTCGCCGGCCAGC
TCAGCACCCGAACGCTCGTTTCATGGGTTGTCTTAGGCATACGAAGCTCATTCCCAATCTAAGAT
CAGATCAAAGATTACGACACCAGGATCAACAGCACACAGGAGGGGACCGGGCCGACCCCCAGCTT
GCGCATTCTACCTCTCCGACCGACTAAGCACCCGCACACTCA
Found at i:25096320 original size:26 final size:26
Alignment explanation
Indices: 25096270--25096322 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25096260 GTTGGCTTAG
* *
25096270 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
25096296 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
25096322 G
1 G
25096323 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:25096511 original size:26 final size:26
Alignment explanation
Indices: 25096481--25096531 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
25096471 TGACTTAGGC
25096481 ATACGGAGTTCATCCCCAGTCTAAGG
1 ATACGGAGTTCATCCCCAGTCTAAGG
*
25096507 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
25096532 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGG
Found at i:25097459 original size:26 final size:26
Alignment explanation
Indices: 25097423--25097501 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
25097413 GTCGATTTAG
25097423 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
25097449 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
** * *
25097475 GCATACATAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
25097501 G
1 G
25097502 ATCAGACTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:25097986 original size:26 final size:26
Alignment explanation
Indices: 25097950--25098002 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25097940 GTTGGCTTAG
25097950 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
25097976 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
25098002 G
1 G
25098003 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:25098309 original size:26 final size:26
Alignment explanation
Indices: 25098279--25098331 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25098269 GTTGACTTAG
25098279 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
25098305 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
25098331 G
1 G
25098332 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:25099021 original size:26 final size:26
Alignment explanation
Indices: 25098991--25099043 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25098981 GTTGACTTGG
25098991 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
25099017 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
25099043 G
1 G
25099044 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:25100131 original size:551 final size:548
Alignment explanation
Indices: 25098718--25100144 Score: 1585
Period size: 551 Copynumber: 2.6 Consensus size: 548
25098708 TGGTCCCTAG
* * * *
25098718 CTTGTGCATTCTACCTCTTCGGTCGGTTGAGTGCCCGCACGCTTGTTTTGTGGGTTGGCTTAGGC
1 CTTGTGCATTCTGCCTCTTCGGTCGATTGAGCGCCCGCACGCTTGTTTTATGGGTTGGCTTAGGC
* * * * * *
25098783 ATACAGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTTCCCAGTCTAAGATCGGACCGGACC
66 ATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCA-TTCCCAATCTAAGATC-GAACAGATC
*
25098848 GAGGGTTGCAACAGCAGGACCAGTAGCAGAATCGGCAGCACGCAGGGGGGACCAGGTCGATCCTC
129 GAGGGTTGCAACAGCAGGACCAGTAGCAGGATCGGCAGCACGCA-GGGGGACCAGGTCGATCCTC
* * * * * * * * * *
25098913 AACTTTTACATTCTGCCTCTCC-AACCA-GCCTCTCCGGTCGACTGAGTGCCCGTACGCTTGTTT
193 AGCTTTTGCATTCTGCCTCTCCGAACGACCCCTCT-AGCTGGA-TGAGCGCCCGCACGCTCGTTT
* *
25098976 CATGGGTTGACTTGGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
256 CATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCT
* * *
25099041 AAGATCGAATCGGATCGAGGGTTACGACAGCAGGATCGGTAGCACGCAGGGGAGACCGGGCCAAT
321 AAGATCGAATCGGATCGAAGATTACGACAGCAGGATCGGTAGCACGCAGGGGAGACCAGGCCAAT
* * * * **
25099106 CCCAGGCTTGCGCATTCTGCCTCTTCGGTCGACTGAGCGCCTGTAAACCCGTTTCGTGGGTTGGC
386 CCCAGGCTTGCGCATTCTACCTCTCCGCTCGACTGAGCACCCATAAACCCGTTTCGTGGGTTGGC
* * *
25099171 TTAGGCATGGGAGTTCATTCCATGTCTAAGCTATAGTCAGACCGAGGGTTGTGGCAACGGACCAA
451 TTAGGCATGGGAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTTGTGGCAACGGACCAA
* * *
25099236 CAGAACGCAGAGGGGGATCAGCCTGATCCCCGA
516 CAGAAAGCAGAGAGGGAACAGCCTGATCCCCGA
* * * * *
25099269 CTTGTGCATTCTGCCTCTTCGGTCGACTGAACACCCGTACGCTTGTTTCATGGGTTGGCTTAGGC
1 CTTGTGCATTCTGCCTCTTCGGTCGATTGAGCGCCCGCACGCTTGTTTTATGGGTTGGCTTAGGC
* * * * * *
25099334 ATACGGAGTGCATTCTATGTCTAAGCATACTGAGTTGATTCCTAATCTAAGATC-AGACCGAATC
66 ATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGA-ACAG-ATC
* * * * **
25099398 GAGGGTTGCAACAGCAGGACCAGCAGTAGGATCAGCAGCACGTAGGAGGGACTGGGTCGATCCTC
129 GAGGGTTGCAACAGCAGGACCAGTAGCAGGATCGGCAGCACGCAGG-GGGACCAGGTCGATCCTC
* * * ** ** * * * *
25099463 -GACTTTTGCATTCTACC-CTCCGACCGGCCTGTCCGGCTGGAAGAGCACCCGCACGCTCATTTT
193 AG-CTTTTGCATTCTGCCTCTCCGAACGACCCCTCTAGCTGGATGAGCGCCCGCACGCTCGTTTC
* * * * ** * * *
25099526 GTAGGTTGATTTATGCATACAAAGTTTATCCCTAGTCTAAGCATA-TGAAGTTCATTCCCAGTCT
257 ATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCT
* * * * * * * *
25099590 ATGATCGAA-CTGGATTGAAGATTGCGACAGCAGGATTGGTAGCATGCAGGGGGGACCAGGTCGA
321 AAGATCGAATC-GGATCGAAGATTACGACAGCAGGATCGGTAGCACGCAGGGGAGACCAGGCCAA
* * ** *
25099654 TCCCCA-GCTTGCGTATTCTACCTCTCCAGCT-GGCTGAGCACCCATATGCCCGTTTTGTGGGTT
385 T-CCCAGGCTTGCGCATTCTACCTCTCC-GCTCGACTGAGCACCCATAAACCCGTTTCGTGGGTT
* * * * *
25099717 GGCTTTGGCATAGTGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGCGGG
448 GGCTTAGGCAT-GGGAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTTGTGGCAAC-GG
* * *
25099782 ACCGACAGAAAGCAGAGAGGGAACCGGCTGATCCCCGA
511 ACCAACAGAAAGCAGAGAGGGAACAGCCTGATCCCCGA
* * *
25099820 CTTGTGCATTCTGCCTCTCCGGTCGATTGAGCGCCCGCACGCTCGTTTTATGGGTGGGCTTAGGC
1 CTTGTGCATTCTGCCTCTTCGGTCGATTGAGCGCCCGCACGCTTGTTTTATGGGTTGGCTTAGGC
*
25099885 ATACGGAGTTCATTCCATGTCTAAGCTTACAGAGTTCATTCCCAATCTAAGATCGAACAGATCGA
66 ATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGAACAGATCGA
* *** * * * * *
25099950 GGGTTACGGTAGCAGAACCAGTAGCAGGATTGGCAGCACACAGAGGGGACCAGGCCGATCCCCAG
131 GGGTTGCAACAGCAGGACCAGTAGCAGGATCGGCAGCACGCAG-GGGGACCAGGTCGATCCTCAG
** * * *
25100015 CTTGCGCATTCTGCCTCTCCGAGCGACCCCTCTAGCTGGTTGAGCGCCCACACGCTCGTTTCATG
195 CTTTTGCATTCTGCCTCTCCGAACGACCCCTCTAGCTGGATGAGCGCCCGCACGCTCGTTTCATG
* ** *
25100080 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTATAAGTGTACAGAGTTCATTCCTAGTCTAAGA
260 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
25100145 GTTTGAGCCA
Statistics
Matches: 707, Mismatches: 152, Indels: 34
0.79 0.17 0.04
Matches are distributed among these distances:
548 3 0.00
549 180 0.25
550 202 0.29
551 320 0.45
552 2 0.00
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (548 bp):
CTTGTGCATTCTGCCTCTTCGGTCGATTGAGCGCCCGCACGCTTGTTTTATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGAACAGATCGA
GGGTTGCAACAGCAGGACCAGTAGCAGGATCGGCAGCACGCAGGGGGACCAGGTCGATCCTCAGC
TTTTGCATTCTGCCTCTCCGAACGACCCCTCTAGCTGGATGAGCGCCCGCACGCTCGTTTCATGG
GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
CGAATCGGATCGAAGATTACGACAGCAGGATCGGTAGCACGCAGGGGAGACCAGGCCAATCCCAG
GCTTGCGCATTCTACCTCTCCGCTCGACTGAGCACCCATAAACCCGTTTCGTGGGTTGGCTTAGG
CATGGGAGTTCATTCCATGTCTAAGCCACAGCCAGACCGAGGGTTGTGGCAACGGACCAACAGAA
AGCAGAGAGGGAACAGCCTGATCCCCGA
Found at i:25100851 original size:26 final size:26
Alignment explanation
Indices: 25100815--25100866 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
25100805 TTGACTTCGA
25100815 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
25100841 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
25100867 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:25101338 original size:26 final size:26
Alignment explanation
Indices: 25101309--25101358 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
25101299 TCGTGGGTTG
*
25101309 GTTTATGCACACGGAGTTCATTCCAT
1 GTTTAAGCACACGGAGTTCATTCCAT
* *
25101335 GTTTAAGCATATGGAGTTCATTCC
1 GTTTAAGCACACGGAGTTCATTCC
25101359 TAATCTAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (26 bp):
GTTTAAGCACACGGAGTTCATTCCAT
Found at i:25102383 original size:343 final size:342
Alignment explanation
Indices: 25101498--25102383 Score: 904
Period size: 343 Copynumber: 2.5 Consensus size: 342
25101488 GCCCGCTTTG
* * * *
25101498 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCCAGTCGGACTGAGGGTTGTGGC
1 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC
* * * * * *
25101563 AGCAAGACTGACAGCGAGATCGGTAGCACGTAGAGTGGGATCGAGCTGATCCCTGACTTACGCAT
66 AGC-AG---GAC--C--GA-C---AGCACATAAAGAGGGATCGGGCCGATCCCTGGCTTACGCAT
* * * *
25101628 TATGCCTCTCCGGTCGGCTGAGCGCCCTGTACGTTCGTTTGATGGGTTGACTTAGGCATACAGAG
119 TATGCCTCTTCGGTCGGCTCAGCGCCC-GTACGCTCCTTTG-TGGGTTGACTTAGGCATACAGAG
* * * * *
25101693 TTCATCCCCAGTCTAAGTATCCGAAGTTCATTCCCAATCTAAGATCGAACCGGATCGATGGTTAC
182 TTCATCCCCAATCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGAATCGAGGGTTAC
* * * * * * ** *
25101758 GGCAATAGGATCAGCAGCACGTAGGGGGGACCGGACCAATCTCTGGCTTGTGCATTCTGTCTCTC
247 GACAATAGGATCAGCAACACGTAGGGCGGACCGGACCAATCCCCGACTTACGCATTCTGCCTCTC
*
25101823 CGACCAACTGAGCGCCTGCACGCCAGTTTCA
312 CGACCAACTGAGCGCCGGCACGCCAGTTTCA
25101854 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC
1 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC
* * * ** * * *
25101919 AGCGGGACCGGCAG--TATGCAGAGGTGGACCGGGCCGAT-CCTCAGCTTATGCATTATGCCTCT
66 AGCAGGACCGACAGCACATAAAGA-G-GGATCGGGCCGATCCCT-GGCTTACGCATTATGCCTCT
* * * * * * *
25101981 TCGGTCGGCTCAGCGCCCGCACGCTTGCTTCGTAGGTTGAATAAGGCATAC-GAAGTTCATCCCT
128 TCGGTCGGCTCAGCGCCCGTACGC-TCCTTTGTGGGTTGACTTAGGCATACAG-AGTTCATCCCC
* * * * * ** *
25102045 AATCTAAGCATACGGAGTTCATTCCTAGTCTTAGATCGGACCGAATCGAGGGTTGTGACAGTAGG
191 AATCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGAATCGAGGGTTACGACAATAGG
* * * * *
25102110 ATCGGCAACACAG-AGGGCGGACC-GAGCCGATCCCCGACTTACGCATTCTGCCTTTCC-AGTCG
256 ATCAGCAACAC-GTAGGGCGGACCGGA-CCAATCCCCGACTTACGCATTCTGCCTCTCCGA-CCA
* *
25102172 GCTGAGCGCCGGCACGCCCGTTTCA
318 ACTGAGCGCCGGCACGCCAGTTTCA
*
25102197 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGT
1 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC
* * *
25102262 AGCTGGACCGACAGCACATAAAGAGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTTG
66 AGCAGGACCGACAGCACATAAAGAGGGATCGGGCCGATCCCTGGCTTACGCATTATGCCTCTTCG
** * * *
25102327 ACCGGCTCAACGCCCGTACGCTCATTTTGTGGGTTGACTTATGCATACAGAGTTCAT
131 GTCGGCTCAGCGCCCGTACGCTC-CTTTGTGGGTTGACTTAGGCATACAGAGTTCAT
25102384 TTCTAGTCTA
Statistics
Matches: 437, Mismatches: 80, Indels: 39
0.79 0.14 0.07
Matches are distributed among these distances:
342 8 0.02
343 298 0.68
344 55 0.13
345 5 0.01
347 1 0.00
348 1 0.00
350 1 0.00
352 3 0.01
355 1 0.00
356 64 0.15
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (342 bp):
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC
AGCAGGACCGACAGCACATAAAGAGGGATCGGGCCGATCCCTGGCTTACGCATTATGCCTCTTCG
GTCGGCTCAGCGCCCGTACGCTCCTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCT
AAGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGAATCGAGGGTTACGACAATAGGATCAG
CAACACGTAGGGCGGACCGGACCAATCCCCGACTTACGCATTCTGCCTCTCCGACCAACTGAGCG
CCGGCACGCCAGTTTCA
Found at i:25102563 original size:26 final size:26
Alignment explanation
Indices: 25102527--25102579 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25102517 GTTGGCTTAG
*
25102527 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
25102553 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
25102579 G
1 G
25102580 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:25103291 original size:26 final size:26
Alignment explanation
Indices: 25103261--25103311 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25103251 GTTGACTTAG
25103261 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
25103287 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
25103312 TGATCAGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:25103588 original size:158 final size:158
Alignment explanation
Indices: 25103293--25103620 Score: 428
Period size: 158 Copynumber: 2.1 Consensus size: 158
25103283 CTAAGCATAT
* * **
25103293 GGAGTTCATTCCCAGTCTATGATCAGATCGGACCGAGGGTCGCGACAGCAGGATCCACAGCACGT
1 GGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTCGCGACAGCAGGATCCACAGCACAC
* * * * * *
25103358 AGGGGGGACCTGACCGATCCTCGGCTTGCGCATTCTGCCTCTCCGATCGATTGAGCGCCCGTACG
66 AGGGGGGACCTGACCGACCCCCGACTTGAGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACG
**
25103423 CCTGTTTCATGGGTTGGCTTAGGCTTAC
131 CCTGTTTCATGGGTTGGCTTAGGCACAC
* *
25103451 GGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCTACAGCACAC
1 GGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTCGCGACAGCAGGATCCACAGCACAC
* * * * *
25103516 AGGGGGGACC-GAGTCGACCCCCGACTTGAGCATTCTGCCTCTCTG-GCTGGCTGAGCGCCTGCA
66 AGGGGGGACCTGA-CCGACCCCCGACTTGAGCATTCTGCCTCTCCGATC-GACTGAGCGCCCGCA
*
25103579 CG-CTCGTTTCGTGGGTTGGCTTAGGCACAC
129 CGCCT-GTTTCATGGGTTGGCTTAGGCACAC
25103609 GGAGTTCATTCC
1 GGAGTTCATTCC
25103621 ATGTTTAAGT
Statistics
Matches: 147, Mismatches: 20, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
157 5 0.03
158 142 0.97
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
GGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTCGCGACAGCAGGATCCACAGCACAC
AGGGGGGACCTGACCGACCCCCGACTTGAGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACG
CCTGTTTCATGGGTTGGCTTAGGCACAC
Found at i:25103833 original size:26 final size:26
Alignment explanation
Indices: 25103787--25103839 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25103777 GTTGACTTAG
*
25103787 GCATACAGAGTTCATCCCCAGCCTAA
1 GCATACAGAGTTCATCACCAGCCTAA
* * *
25103813 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATCACCAGCCTAA
25103839 G
1 G
25103840 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCACCAGCCTAA
Found at i:25104683 original size:698 final size:682
Alignment explanation
Indices: 25103440--25105425 Score: 1819
Period size: 698 Copynumber: 2.9 Consensus size: 682
25103430 CATGGGTTGG
* * * * ** * * *
25103440 CTTAGGCTTACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGC-GACAGCAGGA
1 CTTAGGCATACGAAGTTCATTCCCAATGTAAGATCAGACCAAACCGAAGGTTACAG-CAGCAAGA
* * * * * * * * * * *
25103504 TCTACAGCACACAGGGGGGACCGAGTCGACCCCCGACTTGAGCATTCTGCCTCTCTGGCTGGCTG
65 TCGACAGCACACAGGGGGGATCGGGCCGATCCCCGACTTGTGCATTCTGCCTATCCGACCGACTG
* * ** * * * * *
25103569 AGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTTTAAGTATG
130 AGCACCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATA
* ** * * * * *
25103634 C-AGAGTTCA-TCCTAGTCAAAGATCAAATCAGATCGAGGGTTGCGGCAGTAGGATCGGCAGCAT
195 CGA-AGTTCATTCCCAGTCAAAGATCGGAGCAGATCGAGGGTTGC-ACAGCAGGATCGACAGCAC
* * ** * * * * * * * * *
25103697 GCAGGGAGG-GACCGGACCGATCCCTGGCTTACGCATTCTGCCTCTCCAACCGACTGAATGCCCG
258 GCA-AGAGGTGACTGGGTCGATCCCCGACTTATGCATTCTACCTCTCCGACTGGCTGAGTGCCTG
* * *
25103761 CACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGCCTAAGCATACGGAGTTC
322 CACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTC
* *** * ** * *
25103826 ATTACCAGTCTAAGATTGGATCGGACCGAGGGTTGCGATAGCATAATCGGCAGCACG-TAGTGGG
387 ATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCT-GAGGG
* * * * * * ***
25103890 GA-CGAAGCCGATCCTCGGCTTCCGCATTTTGCCTCTCTGGCCAGCTGAGCCCCCGCATATCCAT
451 GATCG-GGCCGATCC-CTGCTTGCGCATTCTGCCTCTC-CGCCGGCTGAGCCCCCGCACGCCCAT
*
25103954 TTCATGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTG
513 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CGGACCGAGGGTTG
* *
25104019 TGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCAACTTACGCATTTTGCCTC
577 TGGTAGCGGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCAACTTACGCATTATGCCTC
* *
25104084 TTCGGTCGGCTCAGCGCCCACACGCTCATTTCGTGGGTTGA
642 TTCGATCGGCTCAGCGCCCACACGCTCATTTCGTGGGTTAA
* ** * * * *
25104125 CTTAGGCATATGAAGTTCATTCGTAGTGTAAGATTAGACCAAACCGAAGGTTACAGCAGTAGGAT
1 CTTAGGCATACGAAGTTCATTCCCAATGTAAGATCAGACCAAACCGAAGGTTACAGCAGCAAGAT
* * * *
25104190 CGATAGTACACAGGAGGGGATCGGGCCGGTCCCC-AGCTTGTGCATTCTGCCTCTCCGACC-AGC
66 CGACAGCACACAGG-GGGGATCGGGCCGATCCCCGA-CTTGTGCATTCTGCCTATCCGACCGA-C
* *
25104253 TGAGCACCCGCACGCTCGTTTTGTGTGG-TGGCTTAGGCATATGGAGTTCATTCCATGTTTAAGC
128 TGAGCACCCGCACGCTCGTTTTATG-GGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
* * *
25104317 ATACGAAGTTTATTCCCAGTCAAAGATCGGATCGGATCGAGGGTTACGGTAGTAGGACCAACAGC
192 ATACGAAGTTCATTCCCAGTCAAAGATCGGAGCAGATCGA--G----GGT--T--G--C-ACAGC
* * *
25104382 AGGATC-AGCAGCACGCAAGAGG-GA-TCGGGTTGATCCCCGGCTTGTGCATTCTACCTCTCCG-
244 AGGATCGA-CAGCACGCAAGAGGTGACT-GGGTCGATCCCCGACTTATGCATTCTACCTCTCCGA
* * * *
25104443 GTCGGCTGGGTGCCTGCACACTCATTTCATGGGTTGACTTAGGTATACGGAGTTCATCCCCAGTC
307 CT-GGCTGAGTGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
* * *
25104508 TAAGCATACAAAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTGCGACAGTAGGATCG
371 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGACAGCAGGATCG
*
25104573 ACAGCACGCTGAGGGGATCGGGCTGATCCCTGACTTGCGCATTCTGCCTCTCCAGCCGGCTGAGC
436 ACAGCACGCTGAGGGGATCGGGCCGATCCCTG-CTTGCGCATTCTGCCTCTCC-GCCGGCTGAGC
* * * * *
25104638 ACCCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCCAGC
499 CCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGC
* * * * * * * * * ***
25104703 TGGACTGAGAGTTGTGGCAGCGAGATCGGCAGCACGTAGAGGGGGAGCAGGTCGATCCTCGGTTT
564 -GGACCGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCAACTT
* * * *
25104768 GCGCATTATGCCTCTTCGATCGGCTCGGCGCCCGCACGCTCGTTTCGTGGGTTAA
628 ACGCATTATGCCTCTTCGATCGGCTCAGCGCCCACACGCTCATTTCGTGGGTTAA
* * * *** ** * * * *
25104823 CTTATGCATACGGAGTTCATTCCCAATTTAAGATCAGACTGGATTGAGGGTTGCGGTAGCAAGAT
1 CTTAGGCATACGAAGTTCATTCCCAATGTAAGATCAGACCAAACCGAAGGTTACAGCAGCAAGAT
* * * **
25104888 CGACAGCACATAGGGGGGATCGGGCCGATCCTCGACTTGTTCATTCTGCCTATCCGGTCGACTGA
66 CGACAGCACACAGGGGGGATCGGGCCGATCCCCGACTTGTGCATTCTGCCTATCCGACCGACTGA
* * * * * *
25104953 GCGCCTGTACGCTCGTTTTATGGGTTGGCTTAGGCGTATTGTGTTCATTCCATGTCTAAGCATAC
131 GCACCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATAC
* * * *
25105018 GGAGTTCATTCCCAGTCTAAGATTGGAGCAGATCGAGGGTTGCAGAGCAGGATCGACAGCACGCA
196 GAAGTTCATTCCCAGTCAAAGATCGGAGCAGATCGAGGGTTGCACAGCAGGATCGACAGCACGCA
* * * * *
25105083 AGGGGTGACTGGGTCGGTCCCCGACTTATGCATTCTGCCTCTTCGACTGGCTGAGTG-CTCGCAT
261 AGAGGTGACTGGGTCGATCCCCGACTTATGCATTCTACCTCTCCGACTGGCTGAGTGCCT-GCAC
* * * * *
25105147 GCTCGTTTCGTGGGCTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAA-TTCA
325 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATAC-GAAGTTCA
* * *
25105210 TTCCCAATCTAAGATCAGACTAGG-CCGAGGGTTGCGACAGCAGAACCAGCAGCAGGATCGACAG
388 TTCCCAGTCTAAGATCA-AATCGGACCGAGGGTT------GC-G----A-CAGCAGGATCGACAG
* * * * *
25105274 CACGCAGGGGGGATCAGGCCGATCCCCTGCTTGCACATTCTGCCTCTCCGACCGGTTGAGCCCCC
440 CACGCTGAGGGGATCGGGCCGAT-CCCTGCTTGCGCATTCTGCCTCTCCG-CCGGCTGAGCCCCC
* * * *
25105339 ACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGA
503 GCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CGGA
* *
25105404 CCGAGGTTTGTGGTAGCAGGAC
567 CCGAGGGTTGTGGTAGCGGGAC
25105426 TGGCAGCGTG
Statistics
Matches: 1047, Mismatches: 201, Indels: 94
0.78 0.15 0.07
Matches are distributed among these distances:
684 28 0.03
685 177 0.17
686 107 0.10
687 27 0.03
689 2 0.00
691 5 0.00
692 1 0.00
693 3 0.00
695 2 0.00
696 4 0.00
697 263 0.25
698 407 0.39
699 21 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (682 bp):
CTTAGGCATACGAAGTTCATTCCCAATGTAAGATCAGACCAAACCGAAGGTTACAGCAGCAAGAT
CGACAGCACACAGGGGGGATCGGGCCGATCCCCGACTTGTGCATTCTGCCTATCCGACCGACTGA
GCACCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATAC
GAAGTTCATTCCCAGTCAAAGATCGGAGCAGATCGAGGGTTGCACAGCAGGATCGACAGCACGCA
AGAGGTGACTGGGTCGATCCCCGACTTATGCATTCTACCTCTCCGACTGGCTGAGTGCCTGCACG
CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTC
CCAGTCTAAGATCAAATCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCTGAGGGGATCG
GGCCGATCCCTGCTTGCGCATTCTGCCTCTCCGCCGGCTGAGCCCCCGCACGCCCATTTCATGGG
TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCGGACCGAGGGTTGTGGTAGCGG
GACCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCAACTTACGCATTATGCCTCTTCGATCGG
CTCAGCGCCCACACGCTCATTTCGTGGGTTAA
Found at i:25105220 original size:26 final size:26
Alignment explanation
Indices: 25105170--25105222 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25105160 GCTGGCTTAG
* *
25105170 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAATTCATTCCATATCTAA
25105196 GCATACGGAATTCATTCCCA-ATCTAA
1 GCATACGGAATTCATT-CCATATCTAA
25105222 G
1 G
25105223 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCATATCTAA
Found at i:25105241 original size:184 final size:184
Alignment explanation
Indices: 25104828--25105393 Score: 484
Period size: 184 Copynumber: 3.0 Consensus size: 184
25104818 GTTAACTTAT
* * *
25104828 GCATACGGAGTTCATTCCCAATTTAAGATCAGACT-GGATTGAGGGTTGCGGTAGCAAGATCGAC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTAGG-TCGAGGGTTGCAGTAGCAAGATCGAC
* * * *
25104892 AGCACATAGGGGGGATCGGGCCGATCCTCGACTTGTTCATTCTGCCTATCCGGTCGACTGAGCGC
65 AGCACATAGGGGGGATCGGGCCGATCCCCGACTTATGCATTCTGCCTATCCGCTCGACTGAGCGC
* * * * ** *
25104957 CTGTACGCTCGTTTTATGGGTTGGCTTAGGCGTATTGTGTTCATTCCATGTCTAA
130 CTGCACGCTCGTTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* ** * *
25105012 GCATACGGAGTTCATTCCCAGTCTAAGATTGGAGC-AGATCGAGGGTTGCAG-AGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGA-CTAGGTCGAGGGTTGCAGTAGCAAGATCGAC
* * * * * *
25105075 AGCACGCA-AGGGGTGA-CTGGGTCGGTCCCCGACTTATGCATTCTGCCTCTTCGACT-GGCTGA
65 AGCA--CATAGGGGGGATC-GGGCCGATCCCCGACTTATGCATTCTGCCTATCCG-CTCGACTGA
* * *
25105137 GTG-CTCGCATGCTCGTTTCGTGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
126 GCGCCT-GCACGCTCGTTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
25105196 GCATACGGAATTCATTCCCAATCTAAGATCAGACTAGGCCGAGGGTTGCGACAGCAGAACCAGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTAGGTCGAGGGTT------GCAG---TAGCA
** * *** *
25105261 GCAGGATCGACAGCACGCAGGGGGGATCAGGCCGATCCCCTG-CTTGCACATTCTGCCTCTCCGA
57 --A-GATCGACAGCACATAGGGGGGATCGGGCCGATCCCC-GACTTATGCATTCTGCCTATCCG-
** * ** *
25105325 C-CGGTTGAGCCCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
117 CTCGACTGAGCGCCTGCACGCTCGTTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTC
25105389 TAA
182 TAA
25105392 GC
1 GC
25105394 CCTAGCCGGA
Statistics
Matches: 304, Mismatches: 52, Indels: 40
0.77 0.13 0.10
Matches are distributed among these distances:
183 19 0.06
184 165 0.54
185 5 0.02
190 4 0.01
194 4 0.01
195 1 0.00
196 92 0.30
197 14 0.05
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACTAGGTCGAGGGTTGCAGTAGCAAGATCGACA
GCACATAGGGGGGATCGGGCCGATCCCCGACTTATGCATTCTGCCTATCCGCTCGACTGAGCGCC
TGCACGCTCGTTTCATGGGCTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:25105551 original size:26 final size:26
Alignment explanation
Indices: 25105515--25105567 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25105505 GTTGACTTAG
25105515 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
25105541 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
25105567 G
1 G
25105568 ATCGGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:25105903 original size:159 final size:158
Alignment explanation
Indices: 25105541--25105972 Score: 426
Period size: 159 Copynumber: 2.7 Consensus size: 158
25105531 CCCAGTCTAA
* * *
25105541 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGAACTAAGGGTTATGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACTAAGGGTTGTGGCAGCAGGACCGAC
* *
25105605 AGCACACAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGC
65 AGCACACAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACTGGCTCAGCGC
* *
25105670 CCACACACCCGTTTCGTGGGTTGGCTTAG
130 CCACACACCCATTTCGTGGGTTGACTTAG
* * ** * ** * *
25105699 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCAGACTAAGGGTTGTGGCAGCAGGACCGA
** * * * * * * *
25105762 CAGCATGCTGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTTCG-GTAGGCTCTG
64 CAGCACACAG-GGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACT-GGCTCAG
* ** * * *
25105826 CGCCCGCATGCTCATTTTGTGGGTTGACTTAT
127 CGCCCACACACCCATTTCGTGGGTTGACTTAG
* * *
25105858 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTAAGGGTTGTGGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTAAGGGTTGTGGCAGCAGGACCGACA
* * * *
25105923 GCACTCAGGGGGGACTGGG-CTGATCCCCGGCTTGCGCA-TCTGCCTCTCCG
66 GCACACAGGGGGGACCGGGTC-GATCCCCGACTTGCGCATTATGCCTCTCCG
25105973 GTGAGTTGAG
Statistics
Matches: 216, Mismatches: 50, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
157 16 0.07
158 75 0.35
159 120 0.56
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTAAGGGTTGTGGCAGCAGGACCGACA
GCACACAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGACTGGCTCAGCGCC
CACACACCCATTTCGTGGGTTGACTTAG
Found at i:25106784 original size:26 final size:26
Alignment explanation
Indices: 25106745--25106797 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25106735 GTTGACTTAG
25106745 GCATACGAAATTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
* *
25106771 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
25106797 G
1 G
25106798 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:25115392 original size:26 final size:26
Alignment explanation
Indices: 25115353--25115405 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25115343 CTGGTCTGAT
25115353 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
25115379 CTTAGACATG-GAATGAACTCTGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
25115405 C
1 C
25115406 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:25116110 original size:159 final size:158
Alignment explanation
Indices: 25115850--25116174 Score: 395
Period size: 159 Copynumber: 2.1 Consensus size: 158
25115840 CCTCACTACG
* * * *
25115850 TGCTGTCGATCCTACTGCCACAACCCTCGGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTA
1 TGCTGTCGATCCCACTGCCACAACCCTCGGTTCAGACTGAGCTTAGACTGGGAATGAACTCCCTA
* * * * * * * *
25115915 TGCCTAAGTCAACCCACGAAATGAACATTCAAGCGCTGAGCC-GACCGGAGAGGCATAATGCGTA
66 TGCCTAAGCCAACCCACAAAATGAACATACAAGCGCTCAGCCAG-CCGAAGACGCAAAATACGTA
*
25115979 AGTCGAGGATCGGCCCAATCCTCCTCTGCA
130 AGTCGAGGATCGGCCCAATCC-CCCCTGCA
*
25116009 TGCTGTCGATCCCACTGCCACAACCCTCGGTTC-GACTGGGGCTTAGACAT-GGAATGAACTCCC
1 TGCTGTCGATCCCACTGCCACAACCCTCGGTTCAGACT-GAGCTTAGAC-TGGGAATGAACTCCC
* ** *
25116072 TATGCCTAAGCCAACCCACAAAATGAGCATACGGGCGCTCAGCCAGCCGAAGACGTAAAATACGT
64 TATGCCTAAGCCAACCCACAAAATGAACATACAAGCGCTCAGCCAGCCGAAGACGCAAAATACGT
* * * *
25116137 AAGTCGGGGATCGGCTCAGTCCCCCCTGCG
129 AAGTCGAGGATCGGCCCAATCCCCCCTGCA
25116167 TGCTGTCG
1 TGCTGTCG
25116175 CAACCCTTGG
Statistics
Matches: 141, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
158 17 0.12
159 122 0.87
160 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (158 bp):
TGCTGTCGATCCCACTGCCACAACCCTCGGTTCAGACTGAGCTTAGACTGGGAATGAACTCCCTA
TGCCTAAGCCAACCCACAAAATGAACATACAAGCGCTCAGCCAGCCGAAGACGCAAAATACGTAA
GTCGAGGATCGGCCCAATCCCCCCTGCA
Found at i:25116225 original size:26 final size:26
Alignment explanation
Indices: 25116196--25116248 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25116186 CCGGTTCGAT
*
25116196 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
25116222 CTTAGACTGGGGATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
25116248 C
1 C
25116249 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:25116765 original size:195 final size:194
Alignment explanation
Indices: 25116408--25116858 Score: 514
Period size: 195 Copynumber: 2.3 Consensus size: 194
25116398 GGCTGGAGCT
* * *
25116408 TAGACATGGAATAAACT-TCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGCC
1 TAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGCC
* * * *
25116472 GACCAGCGAGGTAGAATGCATAAGCTGGAGATCAACCAGTCCCCCCTGCATGCTACCAATCCTGC
65 GACCAGAGAGGCAGAATGCATAAGCCGGAGATCAACCAGTCCCCCATG-ATGCTACCAATCCTGC
* * * *
25116537 TGCTGGTCCTGCTACCGTAACCCTTGGTCCGATCCGATCTTAGACTGGAAATAAACTCCA-TATG
129 TGCTGATCCTACTACCGCAACCCTTGATCCGATCCGATCTTAGACTGGAAATAAACT-CATTATG
25116601 CG
193 CG
* *
25116603 TAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGTCG
1 TAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGCCG
* * * ** ** * *
25116668 ACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCTATG-TGCTGTCGATCTTGC
66 ACCAGAGAGGCAGAATGCATAAGCCGGAGATC-AACCAGTCCCCC-ATGATGCTACCAATCCTGC
** * * *
25116732 TGCTGATCCTACTGTCGCAACCCTCT-ATCCGATCTGATCTTAGACTGGGAATGAACTCATTATG
129 TGCTGATCCTACTACCGCAACCCT-TGATCCGATCCGATCTTAGACTGGAAATAAACTCATTATG
*
25116796 CT
193 CG
* * * * * *
25116798 TAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAATCGAGCGTATGGGTACTCA
1 TAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCA
25116859 ACCAGCTGGA
Statistics
Matches: 216, Mismatches: 35, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
194 2 0.01
195 200 0.93
196 12 0.06
197 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (194 bp):
TAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGCCG
ACCAGAGAGGCAGAATGCATAAGCCGGAGATCAACCAGTCCCCCATGATGCTACCAATCCTGCTG
CTGATCCTACTACCGCAACCCTTGATCCGATCCGATCTTAGACTGGAAATAAACTCATTATGCG
Found at i:25116808 original size:26 final size:26
Alignment explanation
Indices: 25116770--25116825 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
25116760 CCGATCTGAT
*
25116770 CTTAGACTGGGAATGAACTCATTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
25116796 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCAGTATG
25116822 CTTA
1 CTTA
25116826 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:25117164 original size:158 final size:157
Alignment explanation
Indices: 25116795--25117169 Score: 400
Period size: 158 Copynumber: 2.4 Consensus size: 157
25116785 AACTCATTAT
* * * *
25116795 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAATC-GAGCGTATGGGTACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGGA-CGTGTGGG-CCTCA
* ***
25116859 ACCAGCTGGAGAGGGAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTTGAAC
64 ACCAGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTACAGAAC
* *
25116924 CTGCTGCCACAACCCTCAGTTCGGTCTGA
129 CCGCTGCCACAACCCTCAATTCGGTCTGA
* * * * * * *
25116953 TCATAGAC-TAGGAATGAACTCCGTATGCTTAAGTCAACCCATAAAATGAACGTGTGGGCCTGAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGGACGTGTGGGCCTCAA
* * * **
25117017 CCAGCTGGAGAGGCATAATGCGCAAGCTGGGGATC-AGCCCGATCCCCCTCTGCGTGCTACAGGT
65 CCAGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGATCCCCC-CTGCGTGCTACAGAA
* *
25117081 CCCGCTGCCACAACCCTTGAATT-GG-CTGGG
128 CCCGCTGCCACAACCC-TCAATTCGGTCT-GA
* * * *
25117111 GCTTAGACATGAAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGC
1 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGGACGTGTGGGC
25117170 ACTCGGTCGG
Statistics
Matches: 176, Mismatches: 34, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
156 1 0.01
157 49 0.28
158 120 0.68
159 6 0.03
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGGACGTGTGGGCCTCAAC
CAGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTACAGAACCC
GCTGCCACAACCCTCAATTCGGTCTGA
Found at i:25117301 original size:26 final size:26
Alignment explanation
Indices: 25117269--25117321 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25117259 TGGATATGAT
*
25117269 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25117295 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25117321 C
1 C
25117322 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25118335 original size:26 final size:26
Alignment explanation
Indices: 25118306--25118358 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25118296 CTAATCTGAT
25118306 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
25118332 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
25118358 C
1 C
25118359 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:25119004 original size:158 final size:157
Alignment explanation
Indices: 25118482--25119087 Score: 578
Period size: 158 Copynumber: 3.8 Consensus size: 157
25118472 CCTATACCGC
* * * *
25118482 AACCCTCGATCCGGTCTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
1 AACCCTCGGT-CGGTCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAA
* * ** * * * * * *
25118547 TGAGCTTGTGGGCGCTCAGCCTGCCGAAGAGGCAGAATGCGCAAGTCG-GGACCGACCCGGTCAC
65 CGAGCATACGGACGCTCAGCCAGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTC-C
* *
25118611 CCCCTGCGTTCTGTCAATCCTGCTGCCGT
129 CCTCTGCGTGCTGTCAATCCTGCTGCCGT
* * *
25118640 AACCCTCGGTCCGGTCCT-ATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
1 AACCCTCGGT-CGGT-CTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAA
* * * * * *
25118704 ATGAGCGTAC-GA-GCATTGAGCCAGTCGAAGAGGCATAATGCGTAAGTCGAGGATCGGCCCGGT
64 ACGAGCATACGGACGC--TCAGCCAGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGG-
* *** * *
25118767 TCCCCTCTGTGTGCTGTTGGTCCCGCTGCCAT
126 TCCCCTCTGCGTGCTGTCAATCCTGCTGCCGT
* * **
25118799 AACCCTCGGTCCGACTGGGGCTTAGACAT-GGAATGAACTCC-CTATGCCTAAGTCAACCCACGA
1 AACCCTCGGTCGGTCT-GATCTTAGAC-TGGGAATGAACTCCGC-ATGCCTAAGTCAACCCACGA
* * * *
25118862 AACGGGCATACGGACGCTCAGCC-GATCGGAGAGGTAGAATGCGCAAACCGAGGATCGGCCCGGT
63 AACGAGCATACGGACGCTCAGCCAG-TCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGT
* *
25118926 CCCCTCTGCGTGCTGTCAATCCTACTACCGT
127 CCCCTCTGCGTGCTGTCAATCCTGCTGCCGT
* *
25118957 AACCCACAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAA
1 AACCCTCGGTC-GGTCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAA
* * * * * * * * * *
25119022 CAAGCATATGGGCACTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCAGTCCC
65 CGAGCATACGGACGCTCAGCCAGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCC
25119087 C
130 C
25119088 ATTTGCATGC
Statistics
Matches: 365, Mismatches: 67, Indels: 32
0.79 0.14 0.07
Matches are distributed among these distances:
156 2 0.01
157 4 0.01
158 221 0.61
159 131 0.36
160 5 0.01
161 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
AACCCTCGGTCGGTCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAAC
GAGCATACGGACGCTCAGCCAGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGGTCCCC
TCTGCGTGCTGTCAATCCTGCTGCCGT
Found at i:25119122 original size:317 final size:317
Alignment explanation
Indices: 25118511--25119128 Score: 767
Period size: 317 Copynumber: 1.9 Consensus size: 317
25118501 TCTTAGGCTG
* * * ** *
25118511 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCTTGTGGGCGCTCAGCCTGCCGAAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGACGCTCAGCCTGCCGAAG
** * * *
25118576 AGGCAGAATGCGCAAGTCGGGACCGACCCGGTCACCCCCTGCGTTCTGTCAATCCTGCTGCCGTA
66 AGGCAGAATGCGCAAACCGGGACCGACCCGGTCACCCCCTGCGTGCTGTCAATCCTACTACCGTA
* * * * *
25118641 ACCCTCGGTCCGGTCCTATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAT
131 ACCCACAGTCCGGTCCTATCTTACACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAAC
* * * * * *
25118706 GAGCGTACGAGCATTGAGCCAGTCGAAGAGGCATAATGCGTAAGTCGAGGATCGGCCCGGTTCCC
196 AAGCATACGAGCACTGAGCCAGTCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCAGTTCCC
** ** * * *
25118771 CTCTGTGTGCTGTTGGTCCCGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACAT
261 CTCTGCATGCTGCCGATCCCCCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACAT
* * * *
25118828 GGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGGGCATACGGACGCTCAGCC-GATCGGA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGACGCTCAGCCTG-CCGAA
* * * *
25118892 GAGGTAGAATGCGCAAACCGAGGATCGGCCCGGTC-CCCTCTGCGTGCTGTCAATCCTACTACCG
65 GAGGCAGAATGCGCAAACCG-GGACCGACCCGGTCACCCCCTGCGTGCTGTCAATCCTACTACCG
* *
25118956 TAACCCACAGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGA
129 TAACCCACAGTCCGGTCCT-ATCTTACACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGA
* * * * *
25119020 AACAAGCATATGGGCACTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCAG-T
193 AACAAGCATACGAGCACTGAGCCAGTCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCAGTT
*
25119084 CCCCATTTGCATGCTGCCGATCCCCCTGCCACAACCCTCGGTCCG
258 CCCC-TCTGCATGCTGCCGATCCCCCTGCCACAACCCTCGGTCCG
25119129 GCTCAGCCGA
Statistics
Matches: 252, Mismatches: 45, Indels: 8
0.83 0.15 0.03
Matches are distributed among these distances:
316 8 0.03
317 232 0.92
318 12 0.05
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (317 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGACGCTCAGCCTGCCGAAG
AGGCAGAATGCGCAAACCGGGACCGACCCGGTCACCCCCTGCGTGCTGTCAATCCTACTACCGTA
ACCCACAGTCCGGTCCTATCTTACACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAAC
AAGCATACGAGCACTGAGCCAGTCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCAGTTCCC
CTCTGCATGCTGCCGATCCCCCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACAT
Found at i:25119964 original size:26 final size:26
Alignment explanation
Indices: 25119928--25119980 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25119918 CCAGTCCAAT
* *
25119928 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
25119954 CTTAGACTGGGGATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
25119980 C
1 C
25119981 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:25120164 original size:26 final size:26
Alignment explanation
Indices: 25120135--25120187 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25120125 TCCAATCAAT
25120135 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
25120161 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
25120187 C
1 C
25120188 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:25120472 original size:26 final size:26
Alignment explanation
Indices: 25120432--25120482 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25120422 TGCGTGCTGC
*
25120432 TTAGACTGGGAATGAAGTCCATATGT
1 TTAGACTGGGAATGAACTCCATATGT
*
25120458 TTAGACTAGGG-ATGAACTCCGTATG
1 TTAGACT-GGGAATGAACTCCATATG
25120483 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:25121126 original size:159 final size:157
Alignment explanation
Indices: 25120824--25121200 Score: 395
Period size: 159 Copynumber: 2.4 Consensus size: 157
25120814 AACTTAGCAT
* * * * *
25120824 GCTTAGACATGGAATGAACTCCGCATACCTAAGCCAACCCACGAAATGAGCGTACGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTGAG
* * * *
25120889 CTGGCCGGAGAGGTAGAATGCGCAAGCTGGGGACCGACCCAGTCCCCCCCTGTGTACTGTCGATC
66 ATGGCCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCAGTCCCCCCCTGTGTAC--TCGATC
* * * *
25120954 CTGCTATCGGAACCCTTGGTCCGA-TCCGA
129 CCGCTACCAGAACCCTCGGTCCGACT-CGA
* * *
25120983 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTGA
* * * * *
25121047 GAAT-GCCGGAGAGGCATAATGCACCAGCCGGGGATCGGCCC-GATCCCCCTCTACGTGTTAC-C
65 G-ATGGCCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCAG-TCCCCCCCT--GTG-TACTC
* * *
25121109 GGTCCCGCTACCAGAACCCTCGGTCCGACTGGG
125 GATCCCGCTACCAGAACCCTCGGTCCGACTCGA
* * *
25121142 GCTTGGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGC
25121201 GCTTAGCCAG
Statistics
Matches: 180, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
158 2 0.01
159 169 0.94
160 3 0.02
161 3 0.02
162 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTGAG
ATGGCCGGAGAGGCAGAATGCACAAGCCGGGGACCGACCCAGTCCCCCCCTGTGTACTCGATCCC
GCTACCAGAACCCTCGGTCCGACTCGA
Found at i:25121351 original size:26 final size:26
Alignment explanation
Indices: 25121300--25121352 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25121290 CCAGTCTGAT
* *
25121300 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25121326 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25121352 C
1 C
25121353 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25121716 original size:26 final size:26
Alignment explanation
Indices: 25121677--25121727 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
25121667 TGCAAAAAAT
25121677 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
25121703 CTTAGACATG-GAATGAACTCCGTAT
1 CTTAGAC-TGAGAATGAACTCCGTAT
25121728 TCCTCAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:25122212 original size:26 final size:26
Alignment explanation
Indices: 25122162--25122212 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25122152 CGATCTGATC
**
25122162 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCCATATGG
25122188 TTAGACAT-GGAATGAACTCCATATG
1 TTAGAC-TGGGAATGAACTCCATATG
25122213 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:25122541 original size:159 final size:158
Alignment explanation
Indices: 25122188--25122548 Score: 368
Period size: 158 Copynumber: 2.3 Consensus size: 158
25122178 CTCTGTATGG
* ** *
25122188 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCATACGGGCACTCAGCT
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATACAAGCACTCAGCC
* ** * * **
25122253 GGTCGGAGAGGCAGAATGCGCAAGCCGCGGACCGGTCAGGTCCCCCCTACATGCTGTCGATTCTG
66 GCTCGGAGAGGCAGAATGCGCAAGCCGCGGACCGACCAGATCCCCCCTACATGCTGTCGATCCCA
* * * * *
25122318 TTGCCGCAACCCTCGGTCTGGTCTGATC
131 CTGCCACAACCCTCGATCCGGTCTGAGC
* * * ** * *
25122346 TTAGAC-TGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAATGAGTGTTCAAGCACTGAGC
1 TTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATACAAGCACTCAGC
* * * * * * *
25122410 CGACT-GGAGAGGCATAATGCGTAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATC
65 CG-CTCGGAGAGGCAGAATGCGCAAGCCGCGGACCGACCAGATCCCCC-CTACATGCTGTCGATC
*
25122474 CCACTGCCACAACCCTCGATCCGG-CTGGGGC
128 CCACTGCCACAACCCTCGATCCGGTCT-GAGC
* *
25122505 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAA
25122549 CGGGCATGAG
Statistics
Matches: 163, Mismatches: 35, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.01
158 89 0.55
159 72 0.44
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATACAAGCACTCAGCC
GCTCGGAGAGGCAGAATGCGCAAGCCGCGGACCGACCAGATCCCCCCTACATGCTGTCGATCCCA
CTGCCACAACCCTCGATCCGGTCTGAGC
Found at i:25122962 original size:195 final size:189
Alignment explanation
Indices: 25122630--25123067 Score: 548
Period size: 195 Copynumber: 2.3 Consensus size: 189
25122620 ATGCTGTCAA
* * * * *
25122630 TCTTGCTACCGTAACCCTCGGTCTAGTCCGATATTAGACTGGGAATGAACTCCGTATGCTTACAC
1 TCTTGCTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTACAC
* * * * * * *
25122695 TGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGTTGGCCGG
66 TGGGAATGAACTCCATATGCCAAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAATCGGCCGG
* * * * *
25122760 AGAGGCAGAATGCGTAAGCCGAGGATCGGCTC-AGCCCCCCTGCGTGCTATCGATCCTGCTGCTG
131 AGAGGCAGAATGCGCAAGCCAAGGACCGACCCGAGCCCCCCTGCGTGCTATCGA---T-CT--T-
25122824 G
189 G
*
25122825 TCTTGCTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-
1 TCTTGCTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTACAC
* * *
25122889 TATGGAATGAACTTCGTATGCCAAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAATCGGCCG
66 T-GGGAATGAACTCCATATGCCAAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAATCGGCCG
* *
25122954 GAGAGGCAGAATGCGCAAGCCAAGGACCGACCCGATCCCCCCTGCGTGCTGTCGATCTTG
130 GAGAGGCAGAATGCGCAAGCCAAGGACCGACCCGAGCCCCCCTGCGTGCTATCGATCTTG
25123014 -C-TGCTG-C--AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 TCTTGCTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
25123068 CTAAGTCGAC
Statistics
Matches: 218, Mismatches: 23, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
184 47 0.22
186 1 0.00
187 5 0.02
188 1 0.00
189 1 0.00
190 1 0.00
192 2 0.01
193 1 0.00
194 1 0.00
195 139 0.64
196 19 0.09
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (189 bp):
TCTTGCTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTACAC
TGGGAATGAACTCCATATGCCAAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAATCGGCCGG
AGAGGCAGAATGCGCAAGCCAAGGACCGACCCGAGCCCCCCTGCGTGCTATCGATCTTG
Found at i:25123327 original size:159 final size:159
Alignment explanation
Indices: 25122882--25123501 Score: 541
Period size: 159 Copynumber: 3.8 Consensus size: 159
25122872 AACTCCGTAT
* * * * * *
25122882 GCTTAGATATGGAATGAACTTCGTATGCCAAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * *
25122947 TCGGCCGGAGAGGCAGAATGCGCAAGCCAAGGA-CCGACCCGATCCCCC-CTGCGTGCTGTCGAT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAG-CCCGATCCCCCTCTACGTGCTGTCGAT
** * * * *
25123010 CTTGCTGCTGCAACCCTCAG-TCTGGTCT-GA
130 CCCGCTACCGTAACCCTCAGTTC-GG-CTGGG
* * * * * *
25123040 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAACGAGCGTGTAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
** * * * * * * * * * *
25123104 GCCAACCGGAGAGGCATAATACACAAGCCGGGGATCGGCTCGATCCTCTTCTATGTGCTATCGAT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGAT
25123169 CCCGCTACCGTAACCCTCAGTTCGGCTGGG
130 CCCGCTACCGTAACCCTCAGTTCGGCTGGG
* ** *
25123199 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGATGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * *
25123264 CCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAATCCCCCTCTGCATGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGAT-
* *
25123329 CCACTGTCGATCCTGCTGCCACAACCCTC-GATCCGGCTGGG
130 CC-C-G-CTA-CC-G-T-----AACCCTCAG-TTCGGCTGGG
* * ** * *
25123370 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGTGGGTGCTCTG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * *
25123435 TCGGTCGGAGAGGTAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATC
25123500 CC
131 CC
25123502 ACTGCTGGTC
Statistics
Matches: 370, Mismatches: 73, Indels: 27
0.79 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 86 0.23
159 137 0.37
160 5 0.01
161 1 0.00
162 1 0.00
163 2 0.01
164 2 0.01
165 1 0.00
166 1 0.00
169 1 0.00
170 3 0.01
171 129 0.35
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATC
CCGCTACCGTAACCCTCAGTTCGGCTGGG
Found at i:25123457 original size:171 final size:172
Alignment explanation
Indices: 25123180--25123750 Score: 589
Period size: 171 Copynumber: 3.3 Consensus size: 172
25123170 CCGCTACCGT
* * *
25123180 AACCCTCAGTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
1 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * ** * *
25123245 CGAGCGTGCAGATGCTGAGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAATCCC
66 CGAGCGTGCGGGTGCTCTGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCC
* *
25123310 CCTCTGCATGCTGTCGATCCCACTGTC-GATCCTGCTGCCAC
131 CCTCTGCGTGCTGTCGATCCCACTGTCTGGTCCTGCTGCCAC
* *
25123351 AACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * * * *
25123416 CGAGTGTGTGGGTGCTCTGTCGGTCGGAGAGGTAGAATGCGCAAGTCAGGGATCAGCCCGATCCC
66 CGAGCGTGCGGGTGCTCTGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCC
* *
25123481 CCTCTACGTGCTGTCGATCCCACTGCTGGTCTTGCTGCTGGTCCTACTGCCAC
131 CCTCTGCGTGCTGTCGATCCCA--------C-TG-T-CTGGTCCTGCTGCCAC
* * *
25123534 AACCCTCGGCCCGG-TAGGGGCTTAGAGATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAA
1 AACCCTCGGTCCGGCT-GGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * ** * * *
25123598 ATGAGCGTGCGGGCGCTCTACCGACCGGAGAGGCAAAATGCACAATCCGGGGATC-GACCCGGTC
65 ACGAGCGTGCGGGTGCTCTGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCAG-CCCGATC
** ** *
25123662 CCCC-CTGCGTGCTACCGATCCTGCTG-CTGGTCCTGCTGCCGC
129 CCCCTCTGCGTGCTGTCGATCCCACTGTCTGGTCCTGCTGCCAC
* **
25123704 AACCCTCGGTCCGATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGC
1 AACCCTCGGTCCG-GCTGGGGCTTAGACAT-GGAATGAACTCCGTATGC
25123751 TTAGACATGG
Statistics
Matches: 330, Mismatches: 53, Indels: 35
0.79 0.13 0.08
Matches are distributed among these distances:
169 1 0.00
170 51 0.15
171 133 0.40
172 1 0.00
173 2 0.01
174 1 0.00
179 1 0.00
180 2 0.01
181 1 0.00
182 17 0.05
183 120 0.36
ACGTcount: A:0.21, C:0.32, G:0.27, T:0.20
Consensus pattern (172 bp):
AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
CGAGCGTGCGGGTGCTCTGCCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCC
CCTCTGCGTGCTGTCGATCCCACTGTCTGGTCCTGCTGCCAC
Found at i:25123753 original size:26 final size:26
Alignment explanation
Indices: 25123724--25123776 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25123714 CCGATCTGAT
25123724 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25123750 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25123776 C
1 C
25123777 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25124255 original size:26 final size:26
Alignment explanation
Indices: 25124226--25124278 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25124216 CCGATCCGAT
25124226 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25124252 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25124278 C
1 C
25124279 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25124509 original size:158 final size:159
Alignment explanation
Indices: 25124264--25124588 Score: 393
Period size: 158 Copynumber: 2.1 Consensus size: 159
25124254 TAGACTGGGG
* * ** * * *
25124264 ATGAACTCTGTATGCCTAAGTTAACCCACGAAATGAGCGTGCGGGCGCTCAACCGACCGGAGAGG
1 ATGAACTCTGTAAGCCTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTCAACCGACCGAAAAGG
* * * ** * *
25124329 CAGAATGCACAAACTAGGGATCGGCCCGGTCCCCC-CTATGTGCTGTCGATCCTACTGCCGCAAC
66 CAGAATACACAAACCAGGGATCGACCCGGTCCCCCTCTACATGCTGTCGATCCCACTGCCACAAC
* * *
25124393 CCTCGGTCCGGTTTGATCTTACAC-TGAGA
131 CCTCGGTCCGGCTGGAGCTTACACATG-GA
* * * * *
25124422 ATGAACTCTGTAAGCCTAAGTCAACCCACGAAACAATCGTGCGAGCGCTGAGCTGGCCGAAAAGG
1 ATGAACTCTGTAAGCCTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTCAACCGACCGAAAAGG
* * * *
25124487 CATAATACGCAAGCCAGGGATCGACCCGGTCCCCCTCTACATGCTGTCGATCCCGCTGCCACAAC
66 CAGAATACACAAACCAGGGATCGACCCGGTCCCCCTCTACATGCTGTCGATCCCACTGCCACAAC
25124552 CCTCGGTCCGGCTGGAGCTTACACATGGA
131 CCTCGGTCCGGCTGGAGCTTACACATGGA
25124581 ATGAACTC
1 ATGAACTC
25124589 CCTATGCCTA
Statistics
Matches: 139, Mismatches: 26, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
158 82 0.59
159 55 0.40
160 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (159 bp):
ATGAACTCTGTAAGCCTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTCAACCGACCGAAAAGG
CAGAATACACAAACCAGGGATCGACCCGGTCCCCCTCTACATGCTGTCGATCCCACTGCCACAAC
CCTCGGTCCGGCTGGAGCTTACACATGGA
Found at i:25124650 original size:501 final size:505
Alignment explanation
Indices: 25123527--25125859 Score: 1442
Period size: 501 Copynumber: 4.6 Consensus size: 505
25123517 GCTGGTCCTA
* * *
25123527 CTGCCACAACCCTCGGCCCGG-TAGGGGCTTAGAGATGGAATGAACTCCGTATGCCTAAGCCAAC
1 CTGCCACAACCCTCGGTCCGGCTA-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
** * * * * * * *
25123591 CCACAAAATGAGCGTGCGGGCGCTC-TACCGACCGGAGAGGCAAAATGCACAATCCGGGGATCGA
65 CCATGAAATGGGTGTGTGGGCGCTCAT-CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGA
* *
25123655 CCCGGTCCCCCCTGCGTGCTACCGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGGTCCGATC
129 CCCGGTCCCCCCTGC--G-T---G---CTGCTGCTGATCCTGCTGCCGCAACCCTCGATCCGATC
*
25123720 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
185 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * *
25123785 ACCCACGAAACGAGCGTACGGGCGCTCAGCCGGTCGAAAAGGTAGAATGCGCGAGCAGGGGATCA
250 ACCCACGAAACGAGCGTACGGGCGCTCAACCGACCGAAAAGGCAGAATGCACAAACAGGGGATCA
* * * * *
25123850 GCCCGATCCCCTCCTACGTGGTGTCGATCCTGCTGCCGTAACCCTTGGTCCGGTCCTATCTTAGA
315 GCCCGATCCCCTCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCCTATCTTACA
* * * * * * *
25123915 CAGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAGACAAGCGTGCGGGCGTTGAGCCGATCA
380 CAGAGAATGAACTCTGTAAGCCTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTGAGCCGACCA
* * * * * * *
25123980 GAGAGGCATAATGCACAAGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGGCCCCG
445 GAAAGGCATAATACACAAGCCGAGGATCGACCCGGTCCCCCTCTACATGCTACCGACCCCG
* * * *
25124041 CTGCTACAACCCTCGATCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCC
1 CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * * * * *
25124106 CATGAAA-CGGTCGTGTGGGTGCTCAGCTGGCTGAAGTGGTAGAATGTGCAAGCCGAGGATCGAC
66 CATGAAATGGGT-GTGTGGGCGCTCATCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGAC
*
25124170 CCGGTCCCCCCTGCGTGCTG-T-C-GATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGA
130 CCGGTCCCCCCTGCGTGCTGCTGCTGATCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGA
* * **
25124232 CTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTTAACCCACGAA
195 CTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * *
25124296 ATGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAACTA-GGGATCGGCCCGGTC
259 ACGAGCGTACGGGCGCTCAACCGACCGAAAAGGCAGAATGCACAAAC-AGGGGATCAGCCCGATC
* * *
25124360 CCC-CCTATGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGT-TTGATCTTACACTGAGAA
323 CCCTCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCCT-ATCTTACACAGAGAA
* * *
25124423 TGAACTCTGTAAGCCTAAGTCAACCCACGAAACAATCGTGCGAGCGCTGAGCTGGCC-GAAAAGG
387 TGAACTCTGTAAGCCTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTGAGCCGACCAG-AAAGG
* ** *
25124487 CATAATACGCAAGCC-AGGGATCGACCCGGTCCCCCTCTACATGCTGTCGATCCCG
451 CATAATACACAAGCCGA-GGATCGACCCGGTCCCCCTCTACATGCTACCGACCCCG
*
25124542 CTGCCACAACCCTCGGTCCGGCT-GGAGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 CTGCCACAACCCTCGGTCCGGCTAGG-GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * *
25124606 ACATGAAATGGGTGTGTGGGCAG-TCATCCGACCGGAGAGGTAGAATGCGTAAGCCGGGGATCGG
65 CCATGAAATGGGTGTGTGGGC-GCTCATCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGA
* * * * * *
25124670 CTCGAT-CCCCCTGC--G-TGCTGCAGATCCCGTTGCCACAACCCTCG----G-TCC---C----
129 CCCGGTCCCCCCTGCGTGCTGCTGCTGATCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAG
* *
25124719 ACT--G---G------G-A--CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
194 ACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * *** ** * * * * * * *
25124770 ATGGA-CGTACGGGTGCTCAGTTGGTCGGAGAGGCAAAATGCGCAAGTC-GAGAATCAGCCCGAT
259 A-CGAGCGTACGGGCGCTCAACCGACCGAAAAGGCAGAATGCACAA-ACAGGGGATCAGCCCGAT
** * ** * * * * * * *
25124833 CCCC-CCCGCGTGCTGCCGATCCTACTTTCACAACCTTCGGTCCGATCCGATCTTAGACTGGGAA
322 CCCCTCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCCTATCTTACACAGAGAA
* **
25124897 TGAACTCCGTATGCTTAGATTGGGGATGAACTTCATATGCCTAAGTCAACCCATGAAATGAGCGT
387 TGAA---C---T-C------------TG----T-A-A-GCCTAAGTCAACCCACGAAACAAGCGT
* * * * * * * *
25124962 ACGGGCGCTCAACCAACCGGAGAGGTCGATCGGAGAGGCATAATGCACAAGCCGGGGATC-AGCC
426 GCGAGCGCTGAGCCGACC----A----GA----A-AGGCATAATACACAAGCCGAGGATCGACCC
* * *
25125026 GATCCTCCTCTGCGTGC-TGTCGATCACACTACCGGTCCTG
478 GGTCC-CC-CT-C-TACATG-C--T-AC-CGACC---CC-G
* * * * *
25125066 CTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * * ** * *
25125131 CACGAAATGAGCGTGCGGCCGTTCAGCC-AGTTGGAGAGGCAGAATTCGCAAGCCGGGGATC-AG
66 CATGAAATGGGTGTGTGGGCGCTCATCCGA-CCGGAGAGGTAGAATGCGCAAGCCGGGGATCGA-
* * * * * * * *
25125194 CTCGATCCCCCCCTGCGTGCTGCCTATCCTACTACTAGTCCTACTGCCGCAACCCTTGGTCCGGT
129 CCCGGT-CCCCCCTGCGTGCTG------CTGCT--GA-TCCTGCTGCCGCAACCCTCGATCCGAT
* * *
25125259 CTGATCTTGGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCC
184 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
* * * * * **
25125324 AACCCACGAAACGAGCGTGA-GGGTGCTTAGCCGA-TGAAGAGGCAGAATGCGTAAACCA-GGGA
249 AACCCACGAAACGAGCGT-ACGGGCGCTCAACCGACCGAAAAGGCAGAATGCACAAA-CAGGGGA
* * * * * ** * * *
25125386 TC-GACCCGATCCCCT-TTGCATGCTATCGATCCTGCTAACGCAACGCTTGGTCCAGT-CTGATC
312 TCAG-CCCGATCCCCTCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCCT-ATC
* * * * ** * * * *
25125448 TTAGACTGAGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGCTGCGCT
375 TTACACAGAGAATGAACTCTGTAAGCCTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTGAGCC
* * * * * * **
25125513 GACC-GAAGAGGCATAATGCGCAAGCCGAGGTTCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCC
440 GACCAGAA-AGGCATAATACACAAGCCGAGGATCGACCCGGTCCCCCTCTACATGCTACCGACCC
*
25125577 CA
504 CG
* * * *
25125579 CTGCCACAGCCCTCGGTCTGGCTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * *
25125644 CATGAAACGGGTGTGTGGGCGCTCAGCTGACCGGAGAGGTAGAATGTGCAAGCCGGGGATTGGCT
66 CATGAAATGGGTGTGTGGGCGCTCATCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACC
* * * * * * * * * *
25125709 CGATCCCCCCTGCGTGCTAC--C-AATCCTGTTGCCGTAACCCTTGGTCTGATCCAATCTTAGAT
131 CGGTCCCCCCTGCGTGCTGCTGCTGATCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGAC
* * * * *
25125771 TGGGAATGAACTCCATATGCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAACACACGAAA
196 TGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* *
25125835 CGAGCGTGCGGGCGCTCAATCGACC
260 CGAGCGTACGGGCGCTCAACCGACC
25125860 AGAGTGGCAG
Statistics
Matches: 1414, Mismatches: 274, Indels: 275
0.72 0.14 0.14
Matches are distributed among these distances:
474 132 0.09
475 4 0.00
476 1 0.00
477 2 0.00
480 1 0.00
481 1 0.00
483 1 0.00
486 1 0.00
488 3 0.00
492 1 0.00
493 2 0.00
495 3 0.00
496 1 0.00
497 3 0.00
498 3 0.00
499 3 0.00
500 168 0.12
501 251 0.18
502 150 0.11
503 2 0.00
504 2 0.00
505 3 0.00
506 1 0.00
508 2 0.00
509 1 0.00
511 1 0.00
512 23 0.02
513 133 0.09
514 116 0.08
515 5 0.00
516 3 0.00
517 2 0.00
518 2 0.00
519 1 0.00
520 3 0.00
521 4 0.00
522 3 0.00
523 6 0.00
524 135 0.10
525 9 0.01
526 8 0.01
528 3 0.00
529 2 0.00
535 3 0.00
537 41 0.03
538 15 0.01
539 1 0.00
540 1 0.00
542 1 0.00
543 2 0.00
544 2 0.00
546 1 0.00
550 3 0.00
552 1 0.00
555 1 0.00
556 1 0.00
557 1 0.00
560 1 0.00
561 1 0.00
562 3 0.00
563 78 0.06
564 55 0.04
565 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (505 bp):
CTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CATGAAATGGGTGTGTGGGCGCTCATCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACC
CGGTCCCCCCTGCGTGCTGCTGCTGATCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGAC
TGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC
GAGCGTACGGGCGCTCAACCGACCGAAAAGGCAGAATGCACAAACAGGGGATCAGCCCGATCCCC
TCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCCTATCTTACACAGAGAATGAA
CTCTGTAAGCCTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTGAGCCGACCAGAAAGGCATAA
TACACAAGCCGAGGATCGACCCGGTCCCCCTCTACATGCTACCGACCCCG
Found at i:25124833 original size:157 final size:158
Alignment explanation
Indices: 25124535--25124854 Score: 378
Period size: 157 Copynumber: 2.0 Consensus size: 158
25124525 ACATGCTGTC
**
25124535 GATCCCGCTGCCACAACCCTCGGTCCGGCTGGAGCTTACACATGGAATGAACTCCCTATGCCTAA
1 GATCCCGCTGCCACAACCCTCGGTCCCACTGGAGCTTACACATGGAATGAACTCCCTATGCCTAA
** ** * * * * *
25124600 GCCAACACATGAAATGGGTGTGTGGGCAGTCATCCGACCGGAGAGGTAGAATGCGTAAGCCGGGG
66 GCCAACACATGAAATGGACGTACGGGCAGTCATCCGACCGGAGAGGCAAAATGCGCAAGCCGAGA
* * *
25124665 ATCGGCTCGAT-CCCCCTGCGTGCTGCA
131 ATCAGCCCGATCCCCCCCGCGTGCTGCA
* *
25124692 GATCCCGTTGCCACAACCCTCGGTCCCACTGG-GACTTAGACATGGAATGAACTCCCTATGCCTA
1 GATCCCGCTGCCACAACCCTCGGTCCCACTGGAG-CTTACACATGGAATGAACTCCCTATGCCTA
* * * ** *
25124756 AGCCAACCCATGAAATGGACGTACGGG-TGCTCAGT-TGGTCGGAGAGGCAAAATGCGCAAGTCG
65 AGCCAACACATGAAATGGACGTACGGGCAG-TCA-TCCGACCGGAGAGGCAAAATGCGCAAGCCG
*
25124819 AGAATCAGCCCGATCCCCCCCGCGTGCTGCC
128 AGAATCAGCCCGATCCCCCCCGCGTGCTGCA
25124850 GATCC
1 GATCC
25124855 TACTTTCACA
Statistics
Matches: 136, Mismatches: 23, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
156 2 0.01
157 114 0.84
158 20 0.15
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GATCCCGCTGCCACAACCCTCGGTCCCACTGGAGCTTACACATGGAATGAACTCCCTATGCCTAA
GCCAACACATGAAATGGACGTACGGGCAGTCATCCGACCGGAGAGGCAAAATGCGCAAGCCGAGA
ATCAGCCCGATCCCCCCCGCGTGCTGCA
Found at i:25124935 original size:26 final size:26
Alignment explanation
Indices: 25124884--25124936 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25124874 CCGATCCGAT
*
25124884 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
25124910 CTTAGATTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25124936 C
1 C
25124937 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25127929 original size:18 final size:18
Alignment explanation
Indices: 25127908--25127951 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
25127898 GCCTTGATAG
25127908 AGTTCAAGCCTCTGAACA
1 AGTTCAAGCCTCTGAACA
25127926 AGTTCAAGCCTCTGAACA
1 AGTTCAAGCCTCTGAACA
25127944 AGTTCAAG
1 AGTTCAAG
25127952 TCTACCAAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (18 bp):
AGTTCAAGCCTCTGAACA
Found at i:25132367 original size:11 final size:11
Alignment explanation
Indices: 25132346--25132381 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
25132336 TGGTTAGGCT
*
25132346 CTCCGACGATG
1 CTCCGGCGATG
*
25132357 CTCCGGTGATG
1 CTCCGGCGATG
25132368 CTCCGGCGATG
1 CTCCGGCGATG
25132379 CTC
1 CTC
25132382 TGATGATGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.11, C:0.36, G:0.31, T:0.22
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:25132388 original size:22 final size:22
Alignment explanation
Indices: 25132346--25132389 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
25132336 TGGTTAGGCT
*
25132346 CTCCGACGATGCTCCGGTGATG
1 CTCCGACGATGCTCCGATGATG
* *
25132368 CTCCGGCGATGCTCTGATGATG
1 CTCCGACGATGCTCCGATGATG
25132390 GTGCCTCGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.14, C:0.30, G:0.32, T:0.25
Consensus pattern (22 bp):
CTCCGACGATGCTCCGATGATG
Found at i:25132500 original size:26 final size:26
Alignment explanation
Indices: 25132461--25132511 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25132451 CTCAAAATCT
*
25132461 TAGATTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
*
25132487 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
25132512 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:25132866 original size:26 final size:26
Alignment explanation
Indices: 25132815--25132867 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
25132805 CCGATCCAAT
* *
25132815 CTTAGACTGAGAATGAACTTCATATG
1 CTTAGACTGAGAATAAACTCCATATG
*
25132841 CTTAGACATG-GAATAAACTCCGTATG
1 CTTAGAC-TGAGAATAAACTCCATATG
25132867 C
1 C
25132868 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTCCATATG
Found at i:25133734 original size:26 final size:26
Alignment explanation
Indices: 25133696--25133748 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25133686 GGCTCAAACT
25133696 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25133722 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25133748 C
1 C
25133749 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25134125 original size:26 final size:26
Alignment explanation
Indices: 25134096--25134150 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
25134086 AACGTGCGGG
25134096 TGCTTAGACTGGGAATAAACTCCGTA
1 TGCTTAGACTGGGAATAAACTCCGTA
* * *
25134122 TGCTTAGACTGGGGATGAACTTCGTA
1 TGCTTAGACTGGGAATAAACTCCGTA
25134148 TGC
1 TGC
25134151 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
TGCTTAGACTGGGAATAAACTCCGTA
Found at i:25134517 original size:26 final size:26
Alignment explanation
Indices: 25134466--25134518 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25134456 CTAGTCCGAT
*
25134466 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
25134492 CTTAGACTGGGGATGGACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
25134518 C
1 C
25134519 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25134714 original size:26 final size:26
Alignment explanation
Indices: 25134676--25134728 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
25134666 CCGGTCCGAT
25134676 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
25134702 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
25134728 C
1 C
25134729 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:25135002 original size:158 final size:158
Alignment explanation
Indices: 25134711--25135004 Score: 335
Period size: 158 Copynumber: 1.9 Consensus size: 158
25134701 GCTTAGACAT
* * *
25134711 GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCTTGCAGGCACTCAGCCGGCCGGAG
1 GGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCTTGCAGGCACTCAGCCGACCGAAG
* * ** * * *
25134776 AGACAGAATGCGTAAGCCAGGGATCAGCCCGGTCCCCCTTGCATGCTGTCGATCCTGCTGCCGAA
66 AGACAGAATGCGCAAGCCAGGGACCAGCCCGAACCCCCTTACATGCTGTCGATCCCGCTACCGAA
25134841 ACCCTCAGACCGATCCGATCTTAGATTG
131 ACCCTCAGACCGATCCGATCTTAGATTG
* * * * *
25134869 GGAATGAACT-TCATATGCCTAAGTCAACTCATGAAACGAG-TGTGCGGGCACTGAGCCGATCGA
1 GGAATGAACTCT-ATATGCCTAAGCCAACCCATGAAACGAGCT-TGCAGGCACTCAGCCGACCGA
* * * * * *
25134932 AGAGGCATAATGCGCAAGCCAGGGACCGGCCCGAACCCCGC-TACGTGCTGTTGGTCCCGCTACC
64 AGAGACAGAATGCGCAAGCCAGGGACCAGCCCGAACCCC-CTTACATGCTGTCGATCCCGCTACC
25134996 -ACAACCCTC
128 GA-AACCCTC
25135005 GGTTTGACTG
Statistics
Matches: 111, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.03
158 107 0.96
159 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
GGAATGAACTCTATATGCCTAAGCCAACCCATGAAACGAGCTTGCAGGCACTCAGCCGACCGAAG
AGACAGAATGCGCAAGCCAGGGACCAGCCCGAACCCCCTTACATGCTGTCGATCCCGCTACCGAA
ACCCTCAGACCGATCCGATCTTAGATTG
Found at i:25135205 original size:26 final size:26
Alignment explanation
Indices: 25135176--25135228 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25135166 CTGGTCCAAT
25135176 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
*
25135202 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
25135228 C
1 C
25135229 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:25136402 original size:26 final size:26
Alignment explanation
Indices: 25136373--25136423 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
25136363 CCAGTCTGAT
*
25136373 CTTAAACTGGGAATGAACTCTGTATC
1 CTTAAACTGGGAATGAACTCCGTATC
** *
25136399 CTTAGGCTGGGGATGAACTCCGTAT
1 CTTAAACTGGGAATGAACTCCGTAT
25136424 GCCTAAGTCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATC
Found at i:25137291 original size:26 final size:26
Alignment explanation
Indices: 25137255--25137306 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
25137245 CGGTCCGATG
*
25137255 TTAGACTGGGAATGCACTTCGTATGC
1 TTAGACTGGGAATGAACTTCGTATGC
25137281 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTTCGTATGC
25137307 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTTCGTATGC
Found at i:25137760 original size:336 final size:336
Alignment explanation
Indices: 25136937--25137908 Score: 1149
Period size: 336 Copynumber: 2.9 Consensus size: 336
25136927 CTGGTCCGAT
* * * * *
25136937 CTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGTTGAGC
1 CTTAGACTGGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGTTGAGC
* * * * * * *
25137002 CTGCCAGAGAGGCATAATGCGCAAGCCGGAGATCGATCCGATCCCCCTCTACCTGTTGCCAGTCC
66 CGGCCAGAGAGGCATAATGCGTAAGCCGGGGATCG-TCCGGTCCCCCTCTACATGTTGTCGGTCC
* * *
25137067 CACTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
130 CACTGCCACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* ** * * * * *
25137132 CCCATGAAACGGGCGTGCGGGCGCTCAATCGGTCGGAGAGGAAGAATGCACAAGCCGGGGATCGG
195 CCCACGAAACGGGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGG
* * * * * **
25137197 CCCGATCCCTCCTGTGTGCTGCCGATCCTGCTATCGTAACCCTCGATCCGGTCCGATGTTAGACT
260 CCCGGTCCCCCCTGCGTGCTGTCGATCCTGC--T-G---CCCTCGATCCGATCCGATCCTAGACT
* *
25137262 GGGAATGCACTTCGTATG
319 GGGAATGAACTCCGTATG
* * *
25137280 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAC-AGGTGTACGGGTGTTGAC
1 CTTAGACTGGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAACGA-GTGTGCGGGTGTTGAG
* * * * ** * * *
25137344 CCGGCCGGAGAGGCATAACGCGTAAACCGAGGATCGGTCCGGTCCCTTTCTGCATGTTATCGATC
65 CCGGCCAGAGAGGCATAATGCGTAAGCCGGGGATC-GTCCGGTCCCCCTCTACATGTTGTCGGTC
* * * ** * *
25137409 CCATTGTCACAACCTTTGGTCCGGCTGGGGCTTAGACATGGAACAAACTCACTATGCCTAAGCTA
129 CCACTGCCACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* *
25137474 ACCCACGAAACGGGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGCATGTGCAAGCCGAGGATC-
194 ACCCACGAAACGGGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCG
* *
25137538 GCCCGGTCCCCCCTGCGTGTTGTCGATCCTGCTGCCCTCGGTCCGATCCGATCCTAGACTGGGAA
259 GCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCCTCGATCCGATCCGATCCTAGACTGGGAA
*
25137603 TGAACTCCGTTTG
324 TGAACTCCGTATG
* * * *
25137616 CTTAGACTGGGGATAAACTTCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGTTGAGC
* * * * *
25137681 CGGCCTGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCGCTACTTTTTGTCGGTCC
66 CGGCCAGAGAGGCATAATGCGTAAGCCGGGGATC-GTCCGGTCCCCCTCTACATGTTGTCGGTCC
* * *
25137746 CGCTGCCACAACCTTCGGTCCGGCTGGGGCTTATACATGTAATGAACTCCCTATGCCTAAGCCAA
130 CACTGCCACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * *
25137811 CCCACGAAACGAGCGTGCGGGTGCTCAGCCCGCCGAAGAGGCAGAATGCGCAAGCCAAGGATCGG
195 CCCACGAAACGGGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGG
* * *
25137876 CCTGGT-CCCCCTGCATGCTGTAGATCCTGCTGC
260 CCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGC
25137909 TTGTCCTACT
Statistics
Matches: 529, Mismatches: 96, Indels: 15
0.83 0.15 0.02
Matches are distributed among these distances:
336 279 0.53
337 7 0.01
339 1 0.00
340 1 0.00
342 28 0.05
343 212 0.40
344 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (336 bp):
CTTAGACTGGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGTTGAGC
CGGCCAGAGAGGCATAATGCGTAAGCCGGGGATCGTCCGGTCCCCCTCTACATGTTGTCGGTCCC
ACTGCCACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGGGCGTGCGGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGC
CCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCCTCGATCCGATCCGATCCTAGACTGGGAATG
AACTCCGTATG
Found at i:25137973 original size:26 final size:26
Alignment explanation
Indices: 25137944--25137996 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25137934 CCAGACCGAT
25137944 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
25137970 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
25137996 C
1 C
25137997 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:25138326 original size:159 final size:159
Alignment explanation
Indices: 25137969--25138774 Score: 362
Period size: 159 Copynumber: 5.2 Consensus size: 159
25137959 AACTCCATAT
* * ** *
25137969 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAG
* * * * *** * *
25138034 CCGGCTGGAAAGGCAGAATGCGTAAGTTGGGGATCGGCCCGATCCCCCCTTGGGTGCTATCGATC
66 CCAGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTTGCGTGCTACCGATC
* * * * *
25138099 TTGCTGCCGCAACCCTCGGTCTGGTCTGA
131 CTGCTACCACAACCCTCGATCCGGTCTGA
* * ** * *
25138128 TCTTAGAC-TGGGAAAT-AACTCCGTATGCGTAAGTTAACCCACAAAATGAGCGTGCAGGCACTG
1 GCTTAGACAT-GG-AATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTC
* * * * *
25138191 AGCCAGCCGAAAAGGCATAATGCGCAAGCCAGGGATCGGCTCGGT-CCCCTTCTGCGTGCTGCCT
64 AGCCAGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCT-TGCGTGCTACC-
*
25138255 G-TCCTGCTACCACAACCCTCGATCCGG-CTAGG
127 GATCCTGCTACCACAACCCTCGATCCGGTCT-GA
* **
25138287 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGT-------C-CA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAG-CGTGCAGGCACTCA
* * *** * * **
25138343 G--A---G---AGGCAGAATGCGTAAGCCGGGGATTAACCCGAT-CCCCGTCTACGTGCTGTCGA
65 GCCAGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCT-TGCGTGCTACCGA
*** * *
25138399 TCCTGCTACTGTAACCCTCGGTCCGGTCCGA
129 TCCTGCTACCACAACCCTCGATCCGGTCTGA
* * * * ** * * * ** *
25138430 TCTTAGAC-TGGGAATGGACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTACTGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCA
* * * * * * * * *
25138494 GCCTATCAG-AGAGGCATAATGCACAAGCC-GAGGATCGACCCGAT-CCCCCTCTACCTACTACC
65 GCC-AGCCGAAAAGGCAGAATGCGCAAGCCAG-GGATCGGCCCGATCCCCCCT-TGCGTGCTACC
* * * * * *
25138556 GGTCCCGCTGCCACAACCCTCGGTTCGGT-TGGG
127 GATCCTGCTACCACAACCCTCGATCCGGTCT-GA
* * * ** * * *
25138589 GCTTACACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAG
* * * * * * * * * * *
25138654 -CTGATCGGAGAGGTAGAATGCGAAAGCCGGGGATCAGCTCGATCCCCCC-TGCGTGCTGCCAAT
66 CCAG-CCGAAAAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTTGCGTGCTACCGAT
* * *
25138717 CCTGCTGCCACAACCCTCGGTCTGGT-TCGA
130 CCTGCTACCACAACCCTCGATCCGGTCT-GA
* *
25138747 TCTTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
25138775 TTAGACGGGG
Statistics
Matches: 487, Mismatches: 124, Indels: 73
0.71 0.18 0.11
Matches are distributed among these distances:
142 2 0.00
143 106 0.22
144 2 0.00
146 1 0.00
149 1 0.00
151 4 0.01
152 1 0.00
154 1 0.00
157 1 0.00
158 70 0.14
159 287 0.59
160 11 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAG
CCAGCCGAAAAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTTGCGTGCTACCGATC
CTGCTACCACAACCCTCGATCCGGTCTGA
Found at i:25138791 original size:26 final size:26
Alignment explanation
Indices: 25138748--25138800 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
25138738 CTGGTTCGAT
* *
25138748 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACGGGGAACGAACTCT-GTATG
*
25138774 CTTAGACGGGGGACGAACTCTGTATG
1 CTTAGACGGGGAACGAACTCTGTATG
25138800 C
1 C
25138801 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAACGAACTCTGTATG
Found at i:25139657 original size:26 final size:26
Alignment explanation
Indices: 25139621--25139673 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25139611 TCGGTCTGAT
*
25139621 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25139647 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25139673 C
1 C
25139674 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25140391 original size:26 final size:26
Alignment explanation
Indices: 25140354--25140405 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25140344 GCTCAAAATA
25140354 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
25140380 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
25140406 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Done.