Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 257 of 402
Found at i:25140772 original size:159 final size:159
Alignment explanation
Indices: 25140378--25140795 Score: 396
Period size: 159 Copynumber: 2.6 Consensus size: 159
25140368 AACTCCGTAT
* *
25140378 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** ** *
25140443 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCTCCCCTATGTGCTGTCGATC
66 CCGGTCAAAGAGGCAGAATGCACAAGCCGGGGATCACCCCGATCCTCCCCTATGTGCTATCGATC
* * *
25140508 CTGCTGCCGCAACCCTCAGTTTGGTCCAA
131 CCGCTGCCACAACCCTCAGTTTGCTCCAA
* * * * * * * * *
25140537 TCTTAGA-TTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTACCGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** *
25140601 GCGGGTCAAAGAGGC-GTAATGCGCAAGCCGTGGATCAACCCCG-TCC-CCTTTTGTGTGCTATC
65 GCCGGTCAAAGAGGCAG-AATGCACAAGCCGGGGATC-ACCCCGATCCTCC-CCTATGTGCTATC
* * * ***
25140663 GATCCCGTTGCCATAACCCTCGGTTCTGCT-GGG
127 GATCCCGCTGCCACAACCCTCAGTT-TGCTCCAA
* * *
25140696 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
25140761 CCGGCCTAAGAGGTAGAATGCCCCAGTCGGGGATC
66 CCGGTCAAAGAGGCAGAATGCACAAGCCGGGGATC
25140796 GACTCAGTCC
Statistics
Matches: 201, Mismatches: 51, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
158 4 0.02
159 188 0.94
160 9 0.04
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCAAAGAGGCAGAATGCACAAGCCGGGGATCACCCCGATCCTCCCCTATGTGCTATCGATC
CCGCTGCCACAACCCTCAGTTTGCTCCAA
Found at i:25141259 original size:26 final size:26
Alignment explanation
Indices: 25141222--25141272 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25141212 TGATCCGATC
25141222 TTAGACTGGGAATGAACTCCATATGA
1 TTAGACTGGGAATGAACTCCATATGA
*
25141248 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCATATG
25141273 CCTAAGCTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:25141753 original size:26 final size:26
Alignment explanation
Indices: 25141724--25141774 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25141714 CCGGTCTGAT
*
25141724 CTTAGACTG-GGAATGAACTCTGTATA
1 CTTAGACTGAGG-ATGAACTCCGTATA
25141750 CTTAGACTGAGGATGAACTCCGTAT
1 CTTAGACTGAGGATGAACTCCGTAT
25141775 GCGTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATA
Found at i:25142476 original size:26 final size:26
Alignment explanation
Indices: 25142447--25142517 Score: 115
Period size: 26 Copynumber: 2.7 Consensus size: 26
25142437 TTACACTGGT
*
25142447 AATGAACTCTGTATGCTTAGACAAGG
1 AATGAACTCCGTATGCTTAGACAAGG
* *
25142473 AATGAACTCCATATGCTTAGACATGG
1 AATGAACTCCGTATGCTTAGACAAGG
25142499 AATGAACTCCGTATGCTTA
1 AATGAACTCCGTATGCTTA
25142518 AGCCAACCCA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (26 bp):
AATGAACTCCGTATGCTTAGACAAGG
Found at i:25143203 original size:26 final size:26
Alignment explanation
Indices: 25143159--25143209 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25143149 TAGGTCCGAT
*
25143159 CTTAGACTGGGAATAAACTCTGTATA
1 CTTAGACTGGGAATAAACTCCGTATA
*
25143185 CTTAGACTGAGG-ATGAACTCCGTAT
1 CTTAGACTG-GGAATAAACTCCGTAT
25143210 GCCTAAGTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATA
Found at i:25143564 original size:26 final size:26
Alignment explanation
Indices: 25143526--25143578 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
25143516 CCAGTCTGAT
*
25143526 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATAAACTTC-GTATG
25143552 CTTAGACAT-GGAATAAACTTCGTATG
1 CTTAGAC-TGGGAATAAACTTCGTATG
25143578 C
1 C
25143579 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:25144061 original size:26 final size:26
Alignment explanation
Indices: 25144025--25144074 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
25144015 CCGGTTCGAT
*
25144025 CTTAGATTGGGAATGAACTACGTACG
1 CTTAGACTGGGAATGAACTACGTACG
* *
25144051 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTACGTA
25144075 TGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTACG
Found at i:25144417 original size:26 final size:26
Alignment explanation
Indices: 25144388--25144437 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
25144378 CTGATCCGAT
25144388 CTTAAAC-TGGGAATGAACTCCGTATG
1 CTTAAACAT-GGAATGAACTCCGTATG
*
25144414 CTTAGACATGGAATGAACTCCGTA
1 CTTAAACATGGAATGAACTCCGTA
25144438 AGCATATAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTAAACATGGAATGAACTCCGTATG
Found at i:25144900 original size:26 final size:26
Alignment explanation
Indices: 25144864--25144919 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
25144854 TCGATCTAAA
25144864 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25144890 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25144916 CTTA
1 CTTA
25144920 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25145039 original size:12 final size:12
Alignment explanation
Indices: 25145022--25145051 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
25145012 TGTCGATCCC
25145022 ACTGCCGGCCCT
1 ACTGCCGGCCCT
*
25145034 ACTGCCGGTCCT
1 ACTGCCGGCCCT
25145046 ACTGCC
1 ACTGCC
25145052 ACAACCTTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.10, C:0.47, G:0.23, T:0.20
Consensus pattern (12 bp):
ACTGCCGGCCCT
Found at i:25145274 original size:26 final size:26
Alignment explanation
Indices: 25145245--25145297 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25145235 CCAGTCTGAT
25145245 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
25145271 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
25145297 C
1 C
25145298 CTAAGGCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:25145662 original size:159 final size:159
Alignment explanation
Indices: 25145270--25145686 Score: 383
Period size: 159 Copynumber: 2.6 Consensus size: 159
25145260 AACTCCATAT
* * * **
25145270 GCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAATCCACGAAACAAGCGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTACGGGTGCTCAA
* * * * *
25145335 CTGGCCGAAGAGGTAGAATGCACAAGCCGGGGATCGACCCGATCACCTCCTACGTGCTATCGATC
66 CCGGCCGGAGAGGCAGAATACACAAGCCGGGGATCGACCCGATCACCTCCTACGTGCTACCGATC
** ** * *
25145400 TTGCTGCTGCAACCCTCAGTCCGGTCTGA
131 CCGCTGCCACAACACTCAGTCCGGACTGA
* * * ** *** *
25145429 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTTGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTACGGGTGCTCA
* * * * * * * *
25145493 GCCAGTCGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCGATC-CC-CCTATGTGTGCTGCCG
65 ACCGGCCGGAGAGGCAGAATACACAAGCCGGGGATCGACCCGATCACCTCCTA--CGTGCTACCG
* * * *
25145556 GTCCCGTTGCCACAACACTCGGTCC-GACTGGG
128 ATCCCGCTGCCACAACACTCAGTCCGGACT-GA
* * *
25145588 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAATGGGTGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTACGGGTGCTCAA
* * *
25145653 CCGGCCGGAGAGGCAGAGTGCACAAGCCAGGGAT
66 CCGGCCGGAGAGGCAGAATACACAAGCCGGGGAT
25145687 AGGCCTGGGC
Statistics
Matches: 198, Mismatches: 55, Indels: 10
0.75 0.21 0.04
Matches are distributed among these distances:
157 4 0.02
158 6 0.03
159 187 0.94
160 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCGTACGGGTGCTCAA
CCGGCCGGAGAGGCAGAATACACAAGCCGGGGATCGACCCGATCACCTCCTACGTGCTACCGATC
CCGCTGCCACAACACTCAGTCCGGACTGA
Found at i:25145776 original size:26 final size:26
Alignment explanation
Indices: 25145747--25145799 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25145737 CCGGTCCGAT
25145747 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
25145773 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25145799 C
1 C
25145800 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25145878 original size:184 final size:184
Alignment explanation
Indices: 25145588--25145957 Score: 471
Period size: 184 Copynumber: 2.0 Consensus size: 184
25145578 TCCGACTGGG
* *
25145588 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAATGGGTGTACGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGTGTACGGGTGCACAA
* * *
25145653 CCGGCCGGAGAGGCAGAGTGCACAAGCCAGGGATAGGCCTGGGCCCCCC-CTGCGGCTGCC-GAT
66 CCGGCCGGAGAGGCAGAATGCACAAGCCAGGGACAGGCCTGGGCCCCCCTATG-GGCTGCCAG-T
* *
25145716 CCTACTG-TCGTAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTAT
129 CCTACTGCT-GTAACCCTCAGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTAT
** *
25145772 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGT-C-GGTGCAC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACG-G-GTGTACGGGTGCAC
* * ** * * * * *
25145835 AACCTGTCGGAGAGGCAGAATGCGTAAGCTAGGGACCGGCCTGGTCCCCCCTATGTGCTGTCAGT
64 AACCGGCCGGAGAGGCAGAATGCACAAGCCAGGGACAGGCCTGGGCCCCCCTATGGGCTGCCAGT
* *
25145900 CCTGCTGCTGTAACCCTCAGTCCAGTTCGATCTTAGACTAGGAATGAACTCCGTAT
129 CCTACTGCTGTAACCCTCAGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTAT
25145956 GC
1 GC
25145958 CTAAGTCAAC
Statistics
Matches: 160, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
184 150 0.94
185 6 0.04
186 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGGGTGTACGGGTGCACAA
CCGGCCGGAGAGGCAGAATGCACAAGCCAGGGACAGGCCTGGGCCCCCCTATGGGCTGCCAGTCC
TACTGCTGTAACCCTCAGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:25146029 original size:501 final size:499
Alignment explanation
Indices: 25145047--25146332 Score: 1429
Period size: 501 Copynumber: 2.5 Consensus size: 499
25145037 GCCGGTCCTA
** * *
25145047 CTGCCACAAC-CTTCGACCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
1 CTGCCACAACAC-TCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * *
25145111 CCACGAAATGAGCGTGCGGGCGCTCAACCAGCCGAAGAGGCAGAATGCACAAGCTGGGGATTGGC
65 CCAAGAAATGGGCGTGCGGGTGCTCAACCGGCCGAAGAGGCAGAATGCACAAGC-CGGGATAGGC
* ** * *
25145176 CCGATCCGCCCAAGCGTGCTGCCAATCCTGCTACTGGTCCTACTGTCGTAACCCTCGATCCAGTC
129 CGGA-CC-CCC---C---CTG-C--GGCTGC--C-GATCCTACTGTCGTAACCCTCGATCCGGTC
* * *
25145241 TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCA
180 CGATCTTAGACT-GGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCA
* * * * * *
25145306 ATCCACGAAACAAGCGTACGGGTGCTCAACTGGCCGAAGAGGTAGAATGCACAAGCCGGGGATCG
244 ACCCACGAAACGAGCGTACGGGTGCACAACTGGCCGAAGAGGCAGAATGCACAAGCCAGGGACCG
* *
25145371 ACCCGATCACCTCCTACGTGCTATCGATCTTGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGA
309 ACCCGATCACCCCCTACGTGCTATCGATCCTGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGA
* * *
25145436 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTTGGGCATTGAGCCAGTCG
374 CTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCATTGAGCCAGTCG
* ** * *
25145501 GAGAGGCATAATACGCAAGCCGGGGATCGGCCCGATCCCCCTATGTGTGCTGCCGGTCCCG
439 AAGAGGCATAATACGCAAGCCGGGGATCGGCCCGATCCCCCTATACGTGCTACCAGTCCCG
*
25145562 TTGCCACAACACTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACACTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * *
25145627 CAAGAAATGGGTGTACGGGTGCTCAACCGGCCGGAGAGGCAGAGTGCACAAGCCAGGGATAGGCC
66 CAAGAAATGGGCGTGCGGGTGCTCAACCGGCCGAAGAGGCAGAATGCACAAGCC-GGGATAGGCC
* *
25145692 TGGGCCCCCCCTGCGGCTGCCGATCCTACTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTAG
130 -GGACCCCCCCTGCGGCTGCCGATCCTACTGTCGTAACCCTCGATCCGGTCCGATCTTAGACT-G
*
25145757 GAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAG
193 GAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAG
* * * ** * * * *
25145822 CGTGTC-GGTGCACAACCT-GTCGGAGAGGCAGAATGCGTAAGCTAGGGACCGGCCTGGTC-CCC
258 CGT-ACGGGTGCACAA-CTGGCCGAAGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCACCC
* * * *
25145884 CCTATGTGCTGTC-AGTCCTGCTGCTGTAACCCTCAGTCCAGT-TCGATCTTAGACTAGGAATGA
321 CCTACGTGCTATCGA-TCCTGCTGCTGCAACCCTCAGTCCGGTCT-GATCTTAGACTAGGAATGA
** *
25145947 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCATTGAGCTGGTCGAAGAGGTATA
384 ACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCATTGAGCCAGTCGAAGAGGCATA
* * * * *
25146012 ATGCGCAAGCTGGGGATCGGCCTGGTCCCCCTCTACGTGCTACCAGTCCCG
449 ATACGCAAGCCGGGGATCGGCCCGATCCCCCTATACGTGCTACCAGTCCCG
** * * *
25146063 CTGCTGCAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACACTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * **
25146128 CATGAAATGGGCGTGCGGGTACT-AAGCTGGCCGAAGAGGCAGAATGCGTAAGCCGAGGATCA-G
66 CAAGAAATGGGCGTGCGGGTGCTCAA-CCGGCCGAAGAGGCAGAATGCACAAGCCG-GGAT-AGG
* * * * * * ** * * *
25146191 CCCGATCCCCCCTACGTGCTACCGAACCTTCTGTCACAACCCTCGATCTGGTTCAATCTTAGACT
128 CCGGACCCCCCCTGCG-GCTGCCGATCCTACTGTCGTAACCCTCGATCCGGTCCGATCTTAGACT
* * * * *
25146256 GGAATGAACTCCATATGCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAAGCCACCAAATG
192 GGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACG
* *
25146320 AGCATGCGGGTGC
256 AGCGTACGGGTGC
25146333 TCAGCCAGCC
Statistics
Matches: 658, Mismatches: 100, Indels: 41
0.82 0.13 0.05
Matches are distributed among these distances:
499 2 0.00
500 80 0.12
501 303 0.46
502 141 0.21
503 4 0.01
505 4 0.01
507 1 0.00
508 3 0.00
511 1 0.00
514 3 0.00
515 114 0.17
516 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (499 bp):
CTGCCACAACACTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CAAGAAATGGGCGTGCGGGTGCTCAACCGGCCGAAGAGGCAGAATGCACAAGCCGGGATAGGCCG
GACCCCCCCTGCGGCTGCCGATCCTACTGTCGTAACCCTCGATCCGGTCCGATCTTAGACTGGAA
TGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGT
ACGGGTGCACAACTGGCCGAAGAGGCAGAATGCACAAGCCAGGGACCGACCCGATCACCCCCTAC
GTGCTATCGATCCTGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGT
ATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCATTGAGCCAGTCGAAGAGGCATAATACGCA
AGCCGGGGATCGGCCCGATCCCCCTATACGTGCTACCAGTCCCG
Found at i:25146120 original size:159 final size:157
Alignment explanation
Indices: 25145772--25146213 Score: 510
Period size: 159 Copynumber: 2.8 Consensus size: 157
25145762 AACTCCGTAT
* * *
25145772 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGTCGGTGCACAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGT-TCGG-GCATAA
* * * * * **
25145837 CCT-GTCGGAGAGGCAGAATGCGTAAGCTAGGGACCGGCCTGGTCCCCCCTATGTGCTGTCAGTC
64 GCTGGTCGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCCTGGTCCCCCCTACGTGCTACCAGTC
* * * *
25145901 CTGCTGCTGTAACCCTCAGTCCAGTTCGA
129 CCGCTGCTGCAACCCTCAGTCCAGCTAGA
* * *
25145930 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTTCGGGCA-TAA
* * *
25145994 GCTGGTCGAAGAGGTATAATGCGCAAGCTGGGGATCGGCCTGGTCCCCCTCTACGTGCTACCAGT
64 GCTGGTCGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCCTGGTCCCCC-CTACGTGCTACCAGT
* * *
25146059 CCCGCTGCTGCAACCCTCGGTCCGGCTAGG
128 CCCGCTGCTGCAACCCTCAGTCCAGCTAGA
* * * * *
25146089 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTACTAAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTTCGGGCA-TAAG
* * * * * *
25146154 CTGGCCGAAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGATCCCCCCTACGTGCTACC
65 CTGGTCGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCCTGGTCCCCCCTACGTGCTACC
25146214 GAACCTTCTG
Statistics
Matches: 238, Mismatches: 41, Indels: 10
0.82 0.14 0.03
Matches are distributed among these distances:
156 3 0.01
157 8 0.03
158 98 0.41
159 128 0.54
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTTCGGGCATAAGC
TGGTCGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCCTGGTCCCCCCTACGTGCTACCAGTCCC
GCTGCTGCAACCCTCAGTCCAGCTAGA
Found at i:25146975 original size:26 final size:26
Alignment explanation
Indices: 25146944--25146996 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25146934 CCGATATGAT
*
25146944 CTTAGACTTGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
25146970 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
25146996 C
1 C
25146997 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:25147706 original size:26 final size:26
Alignment explanation
Indices: 25147668--25147720 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25147658 GGCTCAAACT
*
25147668 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
25147694 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
25147720 C
1 C
25147721 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:25148713 original size:26 final size:26
Alignment explanation
Indices: 25148675--25148727 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25148665 GGCTCAAACT
25148675 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25148701 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25148727 C
1 C
25148728 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25149065 original size:25 final size:26
Alignment explanation
Indices: 25149017--25149068 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
25149007 CCAGTTTGGT
*
25149017 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25149043 CTTAGACTGGG-TTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25149068 C
1 C
25149069 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25150617 original size:159 final size:157
Alignment explanation
Indices: 25150337--25150903 Score: 498
Period size: 159 Copynumber: 3.6 Consensus size: 157
25150327 CTTAGACATA
* * * * * *
25150337 GAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCACTGAGCCGGTCAGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTGAGCCGGCCGGAGA
* * * * * *
25150402 GGCAGAATGCGCAA-TCCGGGGACCGACCCGATCCACCCCTGCATGCTATCAATCCTGCTATTGT
66 GGCAGAATGCGCAAGT-CGGGGATCGACCCAATCC-CCCCTGCATGCTGTCGATCCTGCTGTTGC
*
25150466 AACCCTTAGTCCAGTTCGATCTTAGACTGG
129 AACCCTTGGTCCAG-TCGATCTTAGACTGG
* * * *
25150496 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCTTTGAGCCGGCCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTGAGCCGGCCGGAGA
* * ** * ***
25150561 GGCATAATGCGCAAGTTGGGGATCGACCCAATCCCCCTCTGTGTGCTGTCGGTCCTGCTGCCACA
66 GGCAGAATGCGCAAGTCGGGGATCGACCCAATCCCCC-CTGCATGCTGTCGATCCTGCTGTTGCA
* * ** *
25150626 A-CCTTCGGTCCGGCTGGGGCTTAGCCAT-G
130 ACCCTT-GGTCCAG-TCGATCTTAGAC-TGG
* * * * * * * *
25150655 GAATGAGCTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGG-TGCTCAACCGACCGGAG
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCT-CTGAGCCGGCCGGAG
* * *
25150719 AGGAAGAATGCGCAAGTCGGGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCCTACTGTTGCA
65 AGGCAGAATGCGCAAGTCGGGGATCGACCCAATCCCCCCTGCATGCTGTCGATCCTGCTGTTGCA
* * *
25150784 ACCCTCGGTCCAGTCTAATCTGAGACTGG
130 ACCCTTGGTCCAGTC-GATCTTAGACTGG
* * * * * * * *
25150813 GAATGAACTTCGAATGCCTAAGTCAACCCATGAAACGAGCGTACGGATGC-C-CAGCCGACCAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG--GCTCTGAGCCGGCCGGA
* * *
25150876 GAGGCAGGATACGCAAGCCGGGGATCGA
64 GAGGCAGAATGCGCAAGTCGGGGATCGA
25150904 ACGGGTGGTA
Statistics
Matches: 323, Mismatches: 74, Indels: 23
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 113 0.35
159 205 0.63
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTGAGCCGGCCGGAGA
GGCAGAATGCGCAAGTCGGGGATCGACCCAATCCCCCCTGCATGCTGTCGATCCTGCTGTTGCAA
CCCTTGGTCCAGTCGATCTTAGACTGG
Found at i:25151537 original size:26 final size:26
Alignment explanation
Indices: 25151499--25151551 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25151489 GGCTCAAACT
25151499 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
25151525 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
25151551 C
1 C
25151552 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:25151871 original size:26 final size:26
Alignment explanation
Indices: 25151842--25151892 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25151832 TCGGTTCAAT
25151842 CTTAGACTGGGAATGAACTTCGTATA
1 CTTAGACTGGGAATGAACTTCGTATA
* *
25151868 CTTAGATTGGGGATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTTCGTAT
25151893 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATA
Found at i:25152090 original size:26 final size:26
Alignment explanation
Indices: 25152052--25152104 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25152042 CTGATCAGAT
** *
25152052 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
25152078 CTTAGACAAGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
25152104 C
1 C
25152105 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:25152688 original size:341 final size:342
Alignment explanation
Indices: 25152027--25152726 Score: 834
Period size: 341 Copynumber: 2.0 Consensus size: 342
25152017 TGGTCCTATG
*
25152027 GCCGCAACCCTCGGTCTGATCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAAT
1 GCCGCAACCCTCGGTCCGATCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAAT
* * * * * *
25152092 GAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCTAGCGCTAAGCAGGCCGGAGAGGCA
66 GAACACCATATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTAAGCAGACCAGAGAGGCA
**
25152157 GAATGCGCAAGCTGGGGATCAACCCGATCCCCCCTACGTGCTGTCGATCCTGATGTCACAACCCT
131 GAATGCGCAAGCTGGGGATCAACCCGATCCCCCCTACGTGCTGTCGATCCTGATACCACAACCCT
* * * *
25152222 CGATCCAGTCTGATCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGACACGAGCG
196 CGATCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCA
* ***** ***
25152287 TGCGGGCGCTCAACCGGTAAGAAAGGCAGAATGCGCAAGTTGGGGATCAGCTTGGT-CCCC-CTA
261 TGCGGGCGCTCAACC-GTAAGAAAGGCAGAATGCACAAACCAAGGATCAGCCCAGTCCCCCTCTA
* *
25152350 CGTGTTGTCAGTCCTGCT
325 CGTGCTGCCAGTCCTGCT
* * * * * *
25152368 GTCGCAACCCTCGGTCCGGTCCGATCTTAGAGTGGGAATGAACTCCGTATTCTTAGACATGGAAT
1 GCCGCAACCCTCGGTCCGATCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAAT
** * * * *
25152433 GAACACTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACTAGAGAGGCA
66 GAACACCATATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTAAGCAGACCAGAGAGGCA
* * * * *
25152498 GAATGCGTAAGCTGGGGATCGACCTGGTCCCCCCTACGTGCTGTCGAT-CTTACTACCACAACCC
131 GAATGCGCAAGCTGGGGATCAACCCGATCCCCCCTACGTGCTGTCGATCCTGA-TACCACAACCC
** *
25152562 TCGATCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTCAGTCAACCCACGAAACAAGC
195 TCGATCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGC
* * * * * * *
25152627 ATTCGGGCGTTGAGCC-TACCGGAGAGGCATAATGCACAAACCAAGGATC-GACCCAGTCCCCCT
260 ATGCGGGCGCTCAACCGTA--AGAAAGGCAGAATGCACAAACCAAGGATCAG-CCCAGTCCCCCT
* *
25152690 CTGCGTGCTGCCGGTCCTGCT
322 CTACGTGCTGCCAGTCCTGCT
*
25152711 GCCACAACCCTCGGTC
1 GCCGCAACCCTCGGTC
25152727 TGACTGGGGC
Statistics
Matches: 298, Mismatches: 55, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
339 2 0.01
340 4 0.01
341 257 0.86
342 4 0.01
343 31 0.10
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (342 bp):
GCCGCAACCCTCGGTCCGATCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAAT
GAACACCATATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTAAGCAGACCAGAGAGGCA
GAATGCGCAAGCTGGGGATCAACCCGATCCCCCCTACGTGCTGTCGATCCTGATACCACAACCCT
CGATCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCA
TGCGGGCGCTCAACCGTAAGAAAGGCAGAATGCACAAACCAAGGATCAGCCCAGTCCCCCTCTAC
GTGCTGCCAGTCCTGCT
Found at i:25152839 original size:159 final size:158
Alignment explanation
Indices: 25152419--25152831 Score: 422
Period size: 159 Copynumber: 2.6 Consensus size: 158
25152409 ACTCCGTATT
* * *
25152419 CTTAGACATGGAATGAACACTGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * ** * *
25152484 C-GACTAGAGAGGCAGAATGCGTAAGCTGGGGATCGACCTGGTCCCCCCTACGTGCTGTCGATCT
66 CAGAC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCC
* *
25152548 TACTACCACAACCCTCGATCTGGTCTGAT
130 TACTACCACAACCCTCGATCTGGACTGAG
* * * * * *
25152577 CTTAGAC-TGGGAATGAACTTCGTATGCCTCAG-TCAACCCACGAAACAAGCATTCGGGCGTTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCATGCGGGCGCTCA
* * * * ** * *
25152640 GCCTA-CCGGAGAGGCATAATGCACAAACCAAGGATCGACCCAGTCCCCCTCTGCGTGCTGCCGG
64 GCC-AGACGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCC-CTACGTGCTGCCGA
* * * *
25152704 TCCTGCTGCCACAACCCTCGGTCT-GACTGGGG
127 TCCTACTACCACAACCCTCGATCTGGACT-GAG
* * * *
25152736 CTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAATGGGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGCGCTCAGC
*
25152801 CAGTCGGAGAGGCAGAATGCGCAAGCCGGGG
66 CAGACGGAGAGGCAGAATGCGCAAGCCGGGG
25152832 GCCGACCCGA
Statistics
Matches: 200, Mismatches: 46, Indels: 17
0.76 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 90 0.45
159 107 0.54
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGCGCTCAGC
CAGACGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCCT
ACTACCACAACCCTCGATCTGGACTGAG
Found at i:25153257 original size:158 final size:157
Alignment explanation
Indices: 25152978--25153421 Score: 367
Period size: 157 Copynumber: 2.8 Consensus size: 157
25152968 CCGGCTGGGG
** * *
25152978 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGCATGCGGGCGCTCAGC
* * * *
25153043 TGGCCGAAAAGGCAAAATGCGCAAGCTAGGGACCGACCTAGTCCCCCCTGCATGCTGTCGATCTT
66 TGGCCGAAAACGCAAAATGCGCAAGCCAGGGACCGACCCAGTCCCCCCTGCATGCTGTCGATC-C
*
25153108 GCTACCGCAACCCTCGATCTGGTCTGAT
130 GCTACCACAACCCTCGATCTGGTCTGAT
* * * * *
25153136 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCATTCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGCATGCGGGCGCTCAG
* * * * * * *
25153200 CCT-GCCGGAGACGCATAATGTGCAAGCCAGGGA-TGACCCAGTCCCCCTCTGCGTGCTGTCGGT
65 -CTGGCCGAAAACGCAAAATGCGCAAGCCAGGGACCGACCCAGTCCCCC-CTGCATGCTGTCGAT
* ** * **
25153263 CCGCTACCACAACCCTTGGCCCGGT-TGGGG
128 CCGCTACCACAACCCTCGATCTGGTCT-GAT
* * * * * * * * * *
25153293 CTTCGACATTGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-GGACGTACAGGCACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAG-CATGCGGGCGCTCAG
*** * * * * * * * *
25153357 CCAACCGAAGAGGCAGAATGCACAAGCCGGGGATCGATCCTGTCCCCCCTGCATGCTGTCGATCC
65 CTGGCCGAAAACGCAAAATGCGCAAGCCAGGGACCGACCCAGTCCCCCCTGCATGCTGTCGATCC
25153422 TACTTCTGGT
Statistics
Matches: 226, Mismatches: 52, Indels: 17
0.77 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 118 0.52
158 103 0.46
159 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGCATGCGGGCGCTCAGC
TGGCCGAAAACGCAAAATGCGCAAGCCAGGGACCGACCCAGTCCCCCCTGCATGCTGTCGATCCG
CTACCACAACCCTCGATCTGGTCTGAT
Found at i:25153330 original size:157 final size:157
Alignment explanation
Indices: 25152943--25153338 Score: 413
Period size: 158 Copynumber: 2.5 Consensus size: 157
25152933 ATCTTGTTGC
* *
25152943 CGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGGTCC-GCTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* ** * * * *
25153008 AGCCAACCAATGAAATGAGCGTGCGGGTGCTCAGCTGGCCGAAAAGGCAAAATGCGCAAGCTAGG
65 AGCCAACCCATGAAACAAGCATGCGGGCGCTCAGCTGGCCGAAAACGCAAAATGCGCAAGCCAGG
*
25153073 GACCGACCTAGTCCCCCCTGCATGCTGT
130 GACCGACCCAGTCCCCCCTGCATGCTGT
* * * * * ** *
25153101 CGATCTTGCTACCGCAACCCTCGATCTGGTCT-GATCTTAGAC-TGGGAATGAACTTCGTATGCC
1 CGGTC-CGCTACCACAACCCTCGGTCCGGT-TGGGGCTTAGACAT-GGAATGAACTCCGTATGCC
* * * * * * *
25153164 TAAGTCAACCCATGAAACAAGCATTCGGGCGCTGAGCCT-GCCGGAGACGCATAATGTGCAAGCC
63 TAAGCCAACCCATGAAACAAGCATGCGGGCGCTCAG-CTGGCCGAAAACGCAAAATGCGCAAGCC
* *
25153228 AGGGA-TGACCCAGTCCCCCTCTGCGTGCTGT
127 AGGGACCGACCCAGTCCCCC-CTGCATGCTGT
* * * * *
25153259 CGGTCCGCTACCACAACCCTTGGCCCGGTTGGGGCTTCGACATTGAATGAACTCCCTATGCCTAA
1 CGGTCCGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
*
25153324 GCCAACCCACGAAAC
66 GCCAACCCATGAAAC
25153339 GGACGTACAG
Statistics
Matches: 189, Mismatches: 42, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.01
157 70 0.37
158 115 0.61
159 3 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (157 bp):
CGGTCCGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
GCCAACCCATGAAACAAGCATGCGGGCGCTCAGCTGGCCGAAAACGCAAAATGCGCAAGCCAGGG
ACCGACCCAGTCCCCCCTGCATGCTGT
Found at i:25153492 original size:26 final size:26
Alignment explanation
Indices: 25153463--25153515 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25153453 CTGATCCGAT
*
25153463 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
* *
25153489 CTTAGGCATGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
25153515 C
1 C
25153516 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:25153742 original size:158 final size:159
Alignment explanation
Indices: 25153498--25153832 Score: 384
Period size: 158 Copynumber: 2.1 Consensus size: 159
25153488 GCTTAGGCAT
* * * *
25153498 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGAATACGGGCGCTCAGTCGGCCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGAATACAGGCGCTCAGCCGACCGGAG
* * ** * * * *
25153563 AGGCAAAATGTGCAAGTCGGGGACCGACCCGGT-CCTTTCTGCGTGCTATTGATCCTGCTGCCGT
66 AGGCAAAATGTGCAAGCCGGGGACCGACCCGATCCCCCTCTACGTGCTATCGATCCTGCTACCGC
* **
25153627 AACCCTCGATCCGATCTGATCTTAGTTTA
131 AACCCTCGATCCGATCCGATCTTAGACTA
* * * * * * *
25153656 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCAGGCGTTGAGCCGATCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGAATACAGGCGCTCAGCCGACCGGAG
* * ** * *
25153721 AGGCATAATGTGCAAGCCGGGGATCGGTCTGATCCCCCTCTACGTGCTGTCGATCCTGCTACCGC
66 AGGCAAAATGTGCAAGCCGGGGACCGACCCGATCCCCCTCTACGTGCTATCGATCCTGCTACCGC
* *
25153786 AACTCTCGATCCGGTCCGATCTTAGACTA
131 AACCCTCGATCCGATCCGATCTTAGACTA
*
25153815 GGAATGAACTTCATATGC
1 GGAATGAACTCCATATGC
25153833 TTAGACCAGG
Statistics
Matches: 144, Mismatches: 32, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
158 80 0.56
159 64 0.44
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (159 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGAATACAGGCGCTCAGCCGACCGGAG
AGGCAAAATGTGCAAGCCGGGGACCGACCCGATCCCCCTCTACGTGCTATCGATCCTGCTACCGC
AACCCTCGATCCGATCCGATCTTAGACTA
Found at i:25153857 original size:26 final size:26
Alignment explanation
Indices: 25153806--25153858 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25153796 CCGGTCCGAT
* *
25153806 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACCAGGAATGAACTCCATATG
* *
25153832 CTTAGACCAGGGATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCATATG
25153858 C
1 C
25153859 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCATATG
Found at i:25154541 original size:26 final size:27
Alignment explanation
Indices: 25154512--25154563 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
25154502 GCTCAAAATC
25154512 TAGAC-TGTGAATGAAC-TCCGTATGCT
1 TAGACATG-GAATGAACTTCCGTATGCT
25154538 TAGACATGGAATGAACTTCCGTATGC
1 TAGACATGGAATGAACTTCCGTATGC
25154564 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (27 bp):
TAGACATGGAATGAACTTCCGTATGCT
Found at i:25154993 original size:158 final size:157
Alignment explanation
Indices: 25154535--25155028 Score: 462
Period size: 158 Copynumber: 3.1 Consensus size: 157
25154525 AACTCCGTAT
* * * * * *
25154535 GCTTAGACATGGAATGAACTTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGCGCTCA
1 GCTTAGACACGGAATGAAC-TCCTTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTAA
* * * * * * *
25154600 GCCAGTCGGAGAGGCAGAAAGAGCAAGTCGGGGATC-AGCCCGGTCCCCCCTACGTGCTGTCGAT
65 GCCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCGA-CCC-GTCCCCCCTGCGTGCTGTCGAT
* *
25154664 CCTGCTATCATAACCCTCAGTCCGATCTGA
128 CCTGCTATCACAACCCTCAGTCTGATCTGA
* ** * * * * *
25154694 TCTTAGACTGGGAATAAACT-CTGTATGCATAAG-TCAACCCACAAAACGAGTGTGC-GGCACTA
1 GCTTAGACACGGAATGAACTCCT-TATGCCTAAGCT-AACCCACGAAACGAGCGTGCGGGCGCTA
* * * * *
25154756 AGCCGGTCGAAGAGGCATAATGCGTAAGCCGTGGATCGACCCGATCCCCCTCTGTGTGCTATCG-
64 AGCCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCG-TCCCCC-CTGCGTGCTGTCGA
* * *
25154820 TCCTGTTACCACAACCCTCAGTCTGA-CTGGG
127 TCCTGCTATCACAACCCTCAGTCTGATCT-GA
* * * *
25154851 GGTTAGACACAGAATGAACTCCTTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGCGCTTAG
1 GCTTAGACACGGAATGAACTCCTTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * *
25154916 TCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCC-GTCCCCCCTGCGTGCTGTCGATCC
* *
25154981 TGCTGTCGCAACCCTCAGTCT-AGTCTGA
130 TGCTATCACAACCCTCAGTCTGA-TCTGA
* **
25155009 TCTTAGACTGGGAATGAACT
1 GCTTAGACACGGAATGAACT
25155029 TCGTATGCTT
Statistics
Matches: 263, Mismatches: 59, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
156 3 0.01
157 118 0.45
158 124 0.47
159 18 0.07
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
GCTTAGACACGGAATGAACTCCTTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTAAG
CCGGTCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGTCCCCCCTGCGTGCTGTCGATCCT
GCTATCACAACCCTCAGTCTGATCTGA
Found at i:25155420 original size:26 final size:26
Alignment explanation
Indices: 25155391--25155442 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25155381 CCGGTCTGAT
25155391 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25155417 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25155443 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25162583 original size:22 final size:22
Alignment explanation
Indices: 25162555--25162597 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
25162545 GCAAGTCGGG
25162555 GATCCTTGTATTTGGTAGAGGT
1 GATCCTTGTATTTGGTAGAGGT
25162577 GATCCTTGTATTTGGTAGAGG
1 GATCCTTGTATTTGGTAGAGG
25162598 CATGCATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.19, C:0.09, G:0.33, T:0.40
Consensus pattern (22 bp):
GATCCTTGTATTTGGTAGAGGT
Found at i:25162993 original size:25 final size:26
Alignment explanation
Indices: 25162965--25163016 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25162955 GGCTCCAAAT
25162965 CTTAGAC-CGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
** *
25162990 CTTAGACATTGAATGAACTTCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
25163016 C
1 C
25163017 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:25163493 original size:26 final size:26
Alignment explanation
Indices: 25163464--25163513 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
25163454 CTGATCCGAT
25163464 CTTAGACTG-GGAATGAACTCCGTACG
1 CTTAGACTGCGG-ATGAACTCCGTACG
25163490 CTTAGACTGCGGATGAACTCCGTA
1 CTTAGACTGCGGATGAACTCCGTA
25163514 TCCCTAAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGCGGATGAACTCCGTACG
Found at i:25164183 original size:26 final size:26
Alignment explanation
Indices: 25164147--25164199 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25164137 TTGGTTTGAT
*
25164147 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAAACTGGGAATGAACTTC-GTATG
*
25164173 CTTAAACTGGGGATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTTCGTATG
25164199 C
1 C
25164200 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTTCGTATG
Found at i:25165333 original size:159 final size:157
Alignment explanation
Indices: 25164910--25165407 Score: 427
Period size: 157 Copynumber: 3.2 Consensus size: 157
25164900 TCTGTATGCC
* * * *
25164910 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGGGTGCTCAGTCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGTCG
* * * * * * * * *
25164975 GCCAGAGTGGTAGAATGCACAAG-CTGAGTATCGGCCCGAT-CCCCCGGCGTGCTGTCAATCCTT
66 GTCGGAGAGGCAGAATGCGCAAGTC-GAGGATCGGCCCG-TCCCCCCGACGTGCTGCCAATCCGT
** *
25165038 CTGCTGCAACCCTCGGTCCGGTCCGATCT
129 CTGCCACAACCCTCGGTCCGGTCCGAGCT
* * * * * * *
25165067 TAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAACGAGTGTGCGGGCGCTGAGCC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGTC
* * * * * * *
25165131 GATCGAAAAGGCATAATGCGCAAGTCGAGGGTCGGCCCGGTCCCCCTCTACGTGCTGCCAGTCCC
65 GGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCC-GTCCCCC-CGACGTGCTGCCAAT-CC
* *
25165196 GT-TGCCACAACCCTCGGTCCGG-CTGGGGCT
127 GTCTGCCACAACCCTCGGTCCGGTC-CGAGCT
* * *
25165226 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGAGCTCAGTCG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGTCG
* * ** * **
25165291 GTCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCATGTCCCCGTG-CGTGCCGCTGATCC-TA
66 GTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCC-CGTCCCCCCGACGTGCTGCCAATCCGT-
* * *
25165354 CTGCCACAACCCTCGATCCGATCCGATCT
129 CTGCCACAACCCTCGGTCCGGTCCGAGCT
* *
25165383 TGGAC-TGGGAATGAACTCTGTATGC
1 TAGACAT-GGAATGAACTCCGTATGC
25165408 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 63, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
155 1 0.00
156 4 0.02
157 127 0.48
158 8 0.03
159 121 0.46
160 4 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGTCG
GTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGTCCCCCCGACGTGCTGCCAATCCGTCT
GCCACAACCCTCGGTCCGGTCCGAGCT
Found at i:25165465 original size:12 final size:12
Alignment explanation
Indices: 25165448--25165501 Score: 99
Period size: 12 Copynumber: 4.5 Consensus size: 12
25165438 GTCAACCCAT
25165448 GGCCAATATAAG
1 GGCCAATATAAG
25165460 GGCCAATATAAG
1 GGCCAATATAAG
*
25165472 GGCCAATATAGG
1 GGCCAATATAAG
25165484 GGCCAATATAAG
1 GGCCAATATAAG
25165496 GGCCAA
1 GGCCAA
25165502 GTACCAGCAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 40 1.00
ACGTcount: A:0.39, C:0.19, G:0.28, T:0.15
Consensus pattern (12 bp):
GGCCAATATAAG
Found at i:25166245 original size:159 final size:158
Alignment explanation
Indices: 25165865--25166339 Score: 388
Period size: 158 Copynumber: 3.0 Consensus size: 158
25165855 CTCAGTCCGA
* * * * *
25165865 CTGGGGCTTAGACATGG-AATGAAC-CCCGTATGCCTCAGCCAACCCACGAAACGAGCGTGCGGG
1 CTGGGGCTTAGAC-TGGCAATGAACTCCC-TATGCATAAGCCAACCAACGAAACAAGCGTACGGG
* * ** * * * ** * *
25165928 CGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCAGGGATC-AGTCTGGTCCCTTTTGCGTTCT
64 CGCTCAACCGGCTAAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCTTACGTACT
* * * * ***
25165992 GTAGATCCCGCT-AC-CGTAACCTTCGATCCCA
128 GTCGATCCCACTGACAC-AAACC-TCGGTCTGG
* * ** * * *
25166023 TTTGATCTTAGACTGGCAATGAACTCCGTATGCATAAGTCAACCAACGAAACAAGCGTTCGGGCG
1 CTGGGGCTTAGACTGGCAATGAACTCCCTATGCATAAGCCAACCAACGAAACAAGCGTACGGGCG
* * *
25166088 TTGAACCGGCTAAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACGTACTGT
66 CTCAACCGGCTAAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCT-TACGTACTGT
* *
25166153 CGATCCCGCTGCCACAAACCTCGGTCTGG
130 CGATCCCACTGACACAAACCTCGGTCTGG
* * ** *
25166182 CTGGGGCTTAGACATGG-AATGAACTCCCTATGCCTAAGCCAA-CACACGTAACGGGTGTACGGG
1 CTGGGGCTTAGAC-TGGCAATGAACTCCCTATGCATAAGCCAACCA-ACGAAACAAGCGTACGGG
* ** * * *
25166245 CGCTCAACCGGTTGGAGGGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTGCGTGCTG
64 CGCTCAACCGGCTAAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTACGTACTG
* * *
25166310 TCGATCCTACTGACGCAACCCTCGGTCTGG
129 TCGATCCCACTGACACAAACCTCGGTCTGG
25166340 TCCAATCTTA
Statistics
Matches: 251, Mismatches: 58, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 121 0.48
159 118 0.47
160 8 0.03
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTGGGGCTTAGACTGGCAATGAACTCCCTATGCATAAGCCAACCAACGAAACAAGCGTACGGGCG
CTCAACCGGCTAAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTACGTACTGTC
GATCCCACTGACACAAACCTCGGTCTGG
Found at i:25166937 original size:159 final size:159
Alignment explanation
Indices: 25166517--25166988 Score: 415
Period size: 159 Copynumber: 3.0 Consensus size: 159
25166507 TGCCGGTCCT
* *
25166517 ACTGCCACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACT-CGTATGCCTAAGCCAAC
1 ACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * ** * * * *
25166581 CCACGAATCAAGCGCGCGAGCGCTCAGTTGGCCGGAGAGGTAGAATGC-TAAGTCGGGGATCGGC
66 CCACGAAACGAGCGTGCGAGCGCTCAGTCCGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGC
*
25166645 CCAGTCCCCTACTACGTGCTGTCGATCCT
131 CCAGTCCCCTACTACGTGCTGTCGATCCG
* ** * * **
25166674 ACTGCCACAACCCTCGGTCCGGTCT-GATCTTAGAC-TAGGAATGAACTCTGTATGCATAAGTTA
1 ACTGCCACAACCCTCGGTCC-GACTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * * *
25166737 ACCCATGAAATGAGCGTACGAGCGCTGAG-CTGATCGAAGAGGCATAATGCGCAAGCCAGGGATT
64 ACCCACGAAACGAGCGTGCGAGCGCTCAGTCCG-TCGGAGAGGTAGAATGCGCAAGCCAGGGATC
* ** *
25166801 GGCCCAGTCCCCCT-TTGTGTGCTG-CAGGTCCG
128 GGCCCAGT-CCCCTACTACGTGCTGTC-GATCCG
* * * *
25166833 GCTGCCACAACCCTCGATCCGACTGGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 ACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
25166898 CCACGAAACGGGCGTGCGGGCGCTCAGTCCGTGGGAGAGGTAGAATGCGTAAGTC-GAGGATCAG
66 CCACGAAACGAGCGTGCGAGCGCTCAGTCCGTCGGAGAGGTAGAATGCGCAAGCCAG-GGATCGG
* *
25166962 CCCGGTCCCC--CTTGCGTGCTGTCGATC
130 CCCAGTCCCCTAC-TACGTGCTGTCGATC
25166989 TTACGGTGGT
Statistics
Matches: 242, Mismatches: 60, Indels: 25
0.74 0.18 0.08
Matches are distributed among these distances:
156 1 0.00
157 38 0.16
158 69 0.29
159 126 0.52
160 8 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
ACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGAGCGCTCAGTCCGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGC
CCAGTCCCCTACTACGTGCTGTCGATCCG
Found at i:25167520 original size:672 final size:668
Alignment explanation
Indices: 25165683--25167931 Score: 2310
Period size: 673 Copynumber: 3.3 Consensus size: 668
25165673 ATATTAGATT
* * * * *
25165683 GGAATGAACTCCGTATGCTTAGAC-ATTGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATG
1 GGAATGAACTCTGTATGCTTAGACTA-GGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACG
* * * ** * *
25165747 AGAGTACGGGTGCCCAGCCGATCGGAGAGGCATAATGCACAAGCCAGGGATCAGCCCGATCCCCC
65 AGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATAAGCCCGATCCCCC
* *
25165812 TCTGCGTGCTACCGATCCCGCTGCCAGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGA
130 TCTGCGTGCTATCGATCCCGCTACCAGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGA
* * * *
25165877 CATGGAATGAACCCCGTATGCCTC-AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACT
195 CATGGAATGAACTCTGTATGCC-CAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCT
* * ** * * *
25165941 GGAGAGGCAGAATGCGCAAGCC-AGGGATC-AGTCTGGTCCCTTTTGCGTTCTGTAGATCCCGCT
259 GGAGAGGCAGAATGCGCAAGCCGA-GGATCGA-CCCGGTCCCCCTTGCGTGCTGTCGATCCTGCT
* ** * * ** * * *
25166004 ACCGTAACCTTCGATCCCATTTGATCTTAGACTG-GCAATGAACTCCGTATGCATAAGTCAACCA
322 GCCACAACCCTCGGTCCGGTCTGATCTTAGACTGAG-AATGAACTCTGTATGCATAAGTCAACCC
* ** * * * * * * ** *
25166068 ACGAAACAAGCGTTCGGGCGTTGAACCGGCTAAAGAGGCATAATGCGCAAGCCGGGGATC-GACC
386 ATGAAATGAGCGTAC-AGCGCTGAGCTGACCGAAGAGGCATAATGCGCAAG-CGAGGATCGGA-C
* * *
25166132 CGGTCCCCCTCTACGTACTGTCGATCCCGCTGCCACAAACCTCGGTCTGGCTGGGGCTTAGACAT
448 CGGTCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACAT
* * * * * *
25166197 GGAATGAACTCCCTATGCCTAAGCCAACACACGTAACGGGTGTACGGGCGCTCAACCGGTTGGAG
513 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCATCC-GTCGGAG
* * * *
25166262 GGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCCTACTGACGCA
577 AGGCAGAATGCGTAAGCCGAGGATCG-CCCGGTCCCCCTTGCGTGCTGTCGATCCTACTGTCGCA
* * * *
25166327 ACCCTCGGTCTGGTCCAATCTTAGACTG
641 ACCCTCGATCCGATCCGATCTTAGACTG
*
25166355 GGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTTTGCCTAAGTCAACCCACAAAACGA
1 GGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA
* * ** * ** * * * * **
25166420 GCGTGCGAGAGCTCAATCGGCCGAAGAGGCCGACTG-G-AGAGGCATAATGCATAAGTCAGGGAT
66 GCGTGCGGGTGCTCAGCCGGCCGGAGAGGCATAATGCGCA-A-GC--CAGGGATAAG-C-CCGAT
** * * * * * *
25166483 -CAGC-CTGCGTGCTATCGATCCCGCTGCCGGTCCTACTGCCACAACCTTCGGTCCGGCTGGGGC
125 CCCCCTCTGCGTGCTATCGATCCCGCTACCAGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGC
* * * * * *
25166546 TTAGACATGGAATGAACTC-GTATGCCTAAGCCAACCCACGAATCAAGCGCGCGAGCGCTCAGTT
190 TTAGACATGGAATGAACTCTGTATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT
* * * * * * * *
25166610 GGCCGGAGAGGTAGAATGC-TAAGTCGGGGATCGGCCCAGT-CCCCTACTACGTGCTGTCGATCC
255 GGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCT--TGCGTGCTGTCGATCC
* *
25166673 TACTGCCACAACCCTCGGTCCGGTCTGATCTTAGACT-AGGAATGAACTCTGTATGCATAAGTTA
318 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGA-GAATGAACTCTGTATGCATAAGTCA
* * *
25166737 ACCCATGAAATGAGCGTACGAGCGCTGAGCTGATCGAAGAGGCATAATGCGCAAGCCAGGGATTG
382 ACCCATGAAATGAGCGTAC-AGCGCTGAGCTGACCGAAGAGGCATAATGCGCAAGCGA-GGATCG
* * * ** * * * * *
25166802 GCCCAGTCCCCCTTTGTGTGCTG-CAGGTCCGGCTGCCACAACCCTCGATCCGACTGGGGCTTAA
445 GACCGGTCCCCCTCTACGTGCTGTC-GGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAG
*
25166866 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCCGTG
509 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCA-TCCGTC
* * * *
25166931 GGAGAGGTAGAATGCGTAAGTCGAGGATCAGCCCGGTCCCCCTTGCGTGCTGTCGATCTTACGGT
573 GGAGAGGCAGAATGCGTAAGCCGAGGATC-GCCCGGTCCCCCTTGCGTGCTGTCGATCCTACTGT
* *
25166996 GGTAACCCTCGATCCGATCCGATCTTAGACTG
637 CGCAACCCTCGATCCGATCCGATCTTAGACTG
* * **
25167028 AGAATGAACT-TCGTATGCTTAGACTAGGGATGAACTCCGTATGCCGAAGTCAACCCATGAAACG
1 GGAATGAACTCT-GTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACG
* * * * * * * *
25167092 AGCGTGTGGGTGCTTAGCTGGCCAGATAGGCATAATGCGCAAGCCGGGGATTAGCCCGATCCCCT
65 AGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATAAGCCCGATCCCCC
* * * * * * *
25167157 TTTGTGTGCTGTCGATCCCACTACCGGTCCTGCTGCCAGAACCCTCGGTCCGACTGGGGCTTAGA
130 TCTGCGTGCTATCGATCCCGCTACCAGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGA
*
25167222 CATGGAATGAACTCTGTATGCCCAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCTGGCTG
195 CATGGAATGAACTCTGTATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCTG
* * * *
25167287 AAGAGGCAGAATGCGCAAGCCGAGAATCGACCCGGTCCCCCTTGCGTGCTATCGATCCTGCTGCT
260 GAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTGCC
** *
25167352 ACAACCCTCGGTCCGGTCCCATCTTAGACTGAGAATTAACTCTGTATGCATAAGTCAACCCATGA
325 ACAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCATAAGTCAACCCATGA
* * *
25167417 AATGAGCGTGCAGTCGCTGAGCTGACCGAAGAGGCATAATGCGCAAGTCGAAGATCGGACTGGTC
390 AATGAGCGTACAG-CGCTGAGCTGACCGAAGAGGCATAATGCGCAAG-CGAGGATCGGACCGGTC
*
25167482 CCCCTCTCCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAAT
453 CCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAAT
* * * *
25167547 GAACTCCCTATGCTTAAGCCAACCCACGAAATGGGCATGTGGGCGCTCAAT-CGATCGGAGAGGC
518 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTC-ATCCG-TCGGAGAGGC
* * *
25167611 AGAAAGCGTAAGCCGAGGACCTGCCCGGTCTCCCTAT--GTGCTGTCGATCCTACTGTCGCAACC
581 AGAATGCGTAAGCCGAGGATC-GCCCGGTCCCCCT-TGCGTGCTGTCGATCCTACTGTCGCAA-C
25167674 CTCGATCTGATCTGATCTGATCTGATCTGATCCAATCTAGACTG
643 C-C--TC-GATC----C-GATC----C-GAT-C--T-TAGACTG
* * *
25167718 GGAATGAACTCTGTGTGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
1 GGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA
* * * * *
25167783 GCGTGCGGGTGCTCAGCCGGCCGGAAAGGCATAATGCGTAAGCC-GAGGATGAGCACGGTCCCCC
66 GCGTGCGGGTGCTCAGCCGGCCGGAGAGGCATAATGCGCAAGCCAG-GGATAAGCCCGATCCCCC
* * * * * *
25167847 TCTACATGCTGTCGATCTCGCTACCAGTCCTGCT-ACATAACCCTCAGTCCGACTGGGGCTTAGA
130 TCTGCGTGCTATCGATCCCGCTACCAGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGA
25167911 CATGGAATGAACT-TCGTATGC
195 CATGGAATGAACTCT-GTATGC
25167932 ACAAAAAAAT
Statistics
Matches: 1286, Mismatches: 235, Indels: 95
0.80 0.15 0.06
Matches are distributed among these distances:
669 3 0.00
670 3 0.00
671 102 0.08
672 420 0.33
673 452 0.35
674 89 0.07
675 6 0.00
676 7 0.01
680 1 0.00
681 4 0.00
685 1 0.00
686 3 0.00
687 1 0.00
688 1 0.00
689 48 0.04
690 144 0.11
691 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (668 bp):
GGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA
GCGTGCGGGTGCTCAGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATAAGCCCGATCCCCCT
CTGCGTGCTATCGATCCCGCTACCAGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGAC
ATGGAATGAACTCTGTATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCTGG
AGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTTGCGTGCTGTCGATCCTGCTGCCA
CAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCATAAGTCAACCCATGAA
ATGAGCGTACAGCGCTGAGCTGACCGAAGAGGCATAATGCGCAAGCGAGGATCGGACCGGTCCCC
CTCTACGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAA
CTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCATCCGTCGGAGAGGCAGAAT
GCGTAAGCCGAGGATCGCCCGGTCCCCCTTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATC
CGATCCGATCTTAGACTG
Found at i:25167570 original size:159 final size:158
Alignment explanation
Indices: 25167181--25167579 Score: 455
Period size: 158 Copynumber: 2.5 Consensus size: 158
25167171 ATCCCACTAC
* * **
25167181 CGGTCCTGCTGCCAGAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCCA
1 CGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCATA
* * * *
25167246 AGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCTGGCTGAAGAGGCAGAATGCGCAAGCCGAG
66 AGCCAACCCACGAAATGAGCGTACAGGCGCTCAGCTGACCGAAGAGGCAGAATGCGCAAGCCGAG
*
25167311 AATCGACCCGGTCCCCCTTGCGTGCTAT
131 AATCGACCCGGTCCCCCTTCCGTGCTAT
* * **** *
25167339 CGATCCTGCTGCTACAACCCTCGGTCCGG-TCCCATCTTAGAC-TGAGAATTAACTCTGTATGCA
1 CGGTCCTGCTGCCACAACCCTCGGTCCGGCT-GGGGCTTAGACATG-GAATGAACTCTGTATGCA
* * * * * * *
25167402 TAAGTCAACCCATGAAATGAGCGTGCAGTCGCTGAGCTGACCGAAGAGGCATAATGCGCAAGTCG
64 TAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAGCTGACCGAAGAGGCAGAATGCGCAAGCCG
* *
25167467 A-AGATCGGA-CTGGTCCCCCTCTCCGTGCTGT
129 AGA-ATC-GACCCGGTCCCCCT-TCCGTGCTAT
* * ** *
25167498 CGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCTTA
1 CGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCATA
25167563 AGCCAACCCACGAAATG
66 AGCCAACCCACGAAATG
25167580 GGCATGTGGG
Statistics
Matches: 195, Mismatches: 39, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.02
158 115 0.59
159 73 0.37
160 3 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
CGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCATA
AGCCAACCCACGAAATGAGCGTACAGGCGCTCAGCTGACCGAAGAGGCAGAATGCGCAAGCCGAG
AATCGACCCGGTCCCCCTTCCGTGCTAT
Found at i:25167609 original size:159 final size:158
Alignment explanation
Indices: 25167181--25167627 Score: 438
Period size: 158 Copynumber: 2.8 Consensus size: 158
25167171 ATCCCACTAC
* * **
25167181 CGGTCCTGCTGCCAGAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTATGCCCA
1 CGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCATA
* * * * *
25167246 AGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCTGGCT-GAAGAGGCAGAATGCGCAAGCCGA
66 AGCCAACCCACGAAATGAGCGTGCGGGCGCTCA-ATCGATCGAAGAGGCAGAATGCGCAAGCCGA
*
25167310 GAATCGACCCGGTCCCCCTTGCGTGCTAT
130 GAATCGACCCGGTCCCCCTTCCGTGCTAT
* * **** *
25167339 CGATCCTGCTGCTACAACCCTCGGTCCGG-TCCCATCTTAGAC-TGAGAATTAACTCTGTATGCA
1 CGGTCCTGCTGCCACAACCCTCGGTCCGGCT-GGGGCTTAGACATG-GAATGAACTCTGTATGCA
* * * * * * * * *
25167402 TAAGTCAACCCATGAAATGAGCGTGCAGTCGCT-GAGCTGACCGAAGAGGCATAATGCGCAAGTC
64 TAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAATC-GATCGAAGAGGCAGAATGCGCAAGCC
* *
25167466 GA-AGATCGGA-CTGGTCCCCCTCTCCGTGCTGT
128 GAGA-ATC-GACCCGGTCCCCCT-TCCGTGCTAT
* * ** *
25167498 CGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCTTA
1 CGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCATA
* * * * * *
25167563 AGCCAACCCACGAAATGGGCATGTGGGCGCTCAATCGATCGGAGAGGCAGAAAGCGTAAGCCGAG
66 AGCCAACCCACGAAATGAGCGTGCGGGCGCTCAATCGATCGAAGAGGCAGAATGCGCAAGCCGAG
25167628 GACCTGCCCG
Statistics
Matches: 223, Mismatches: 55, Indels: 20
0.75 0.18 0.07
Matches are distributed among these distances:
157 5 0.02
158 109 0.49
159 104 0.47
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCTGTATGCATA
AGCCAACCCACGAAATGAGCGTGCGGGCGCTCAATCGATCGAAGAGGCAGAATGCGCAAGCCGAG
AATCGACCCGGTCCCCCTTCCGTGCTAT
Found at i:25167687 original size:5 final size:5
Alignment explanation
Indices: 25167677--25167705 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
25167667 CGCAACCCTC
25167677 GATCT GATCT GATCT GATCT GATCT GATC
1 GATCT GATCT GATCT GATCT GATCT GATC
25167706 CAATCTAGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (5 bp):
GATCT
Found at i:25167711 original size:15 final size:15
Alignment explanation
Indices: 25167678--25167711 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
25167668 GCAACCCTCG
**
25167678 ATCTGATCTGATCTG
1 ATCTGATCTGATCCA
25167693 ATCTGATCTGATCCA
1 ATCTGATCTGATCCA
25167708 ATCT
1 ATCT
25167712 AGACTGGGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.38
Consensus pattern (15 bp):
ATCTGATCTGATCCA
Found at i:25170524 original size:26 final size:26
Alignment explanation
Indices: 25170486--25170537 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25170476 GGCTCAAAAT
* *
25170486 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25170512 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25170538 TCTAGGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25171017 original size:26 final size:26
Alignment explanation
Indices: 25170988--25171040 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25170978 CCGGTCTGAT
25170988 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
* *
25171014 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
25171040 C
1 C
25171041 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:25171381 original size:26 final size:26
Alignment explanation
Indices: 25171343--25171395 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25171333 CTGGTCTGAT
*
25171343 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
25171369 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
25171395 C
1 C
25171396 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:25171511 original size:184 final size:179
Alignment explanation
Indices: 25171184--25171601 Score: 444
Period size: 184 Copynumber: 2.3 Consensus size: 179
25171174 TCCGGTTGGG
* * ** *
25171184 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * ** * * * *
25171249 CCGGTCGGAGAGGCAGAATATGCAAGCCAGGGATCGACTCGATCCCCTCTGCGTGCTGTCGATCC
66 CCAGTCGGAAAGGCAGAATACACAAGCCAGGGATCGACCCGATCCCCCCTGCATGCTGGCGATCC
* * * * * * *
25171314 TGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTTTGTAT
131 TGCTACAGCAACCCTCGATCCGG--T--T-TTAGACTGCGAATGAACTCTATAT
*
25171368 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * * *
25171433 TCAGTCGGAAAGGCAGAATGCACAAGTCAGGGATCGGCCC-AGTCCCCCCTGCATGCTGGGGATC
66 CCAGTCGGAAAGGCAGAATACACAAGCCAGGGATCGACCCGA-TCCCCCCTGCATGCTGGCGATC
* * * *
25171497 TTGTTGCAGCAACCCTCGATCCGGTTTTAGACTGCGAATGAAGTCTATAT
130 CTGCTACAGCAACCCTCGATCCGGTTTTAGACTGCGAATGAACTCTATAT
* * * * *
25171547 GCTTAGAC-TGGGGATGAACTCTGTATGCCAAAGTCAACCCACGAATCGAACGTGC
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
25171602 TCAGTCGGTG
Statistics
Matches: 197, Mismatches: 35, Indels: 9
0.82 0.15 0.04
Matches are distributed among these distances:
178 1 0.01
179 68 0.35
180 1 0.01
182 1 0.01
183 1 0.01
184 125 0.63
ACGTcount: A:0.25, C:0.26, G:0.27, T:0.22
Consensus pattern (179 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
CCAGTCGGAAAGGCAGAATACACAAGCCAGGGATCGACCCGATCCCCCCTGCATGCTGGCGATCC
TGCTACAGCAACCCTCGATCCGGTTTTAGACTGCGAATGAACTCTATAT
Found at i:25171563 original size:26 final size:26
Alignment explanation
Indices: 25171523--25171574 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25171513 CGATCCGGTT
*
25171523 TTAGACTGCGAATGAAGTCTATATGC
1 TTAGACTGCGAATGAACTCTATATGC
* * *
25171549 TTAGACTGGGGATGAACTCTGTATGC
1 TTAGACTGCGAATGAACTCTATATGC
25171575 CAAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGCGAATGAACTCTATATGC
Found at i:25171978 original size:158 final size:158
Alignment explanation
Indices: 25171672--25172019 Score: 421
Period size: 158 Copynumber: 2.2 Consensus size: 158
25171662 CCCCCTTGCG
* *
25171672 TGCTGTCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGAGAATCAACTCTGTA
1 TGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTAATCTTAGACTGAGAATCAACTCTGTA
**
25171737 TGCCTAACTCAACCCACGAAACGAGCATACGGGCGTTGACCCGACCGAAAAGTTATAATGCGTAA
66 TGCCTAACTCAACCCACGAAACGAGCATACGGGCGTTGACCCGACCGAAAAGTTATAATGCACAA
* *
25171802 GCCGAGGACCGGCTCGATCCCCCCTACA
131 GCAGAGGACCGGCCCGATCCCCCCTACA
* * * * * *
25171830 TGCTGTCGATCCTGCTACCGTAACCCTCGGTCCGAT-TCAATCTTAGACTGGGAATGAACTTTGT
1 TGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCT-AATCTTAGACTGAGAATCAACTCTGT
* * * * * *
25171894 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGTTGACCCGGCCGGAGAGTTATCATGCACA
65 ATGCCTAACTCAACCCACGAAACGAGCATACGGGCGTTGACCCGACCGAAAAGTTATAATGCACA
* * *
25171959 AGCTAG-GGATCGGCCCGATCCCCCTCTGCG
130 AGC-AGAGGACCGGCCCGATCCCCC-CTACA
* * * * *
25171989 TGCTATCGGTCCCGCTGCCACAACCCTCAGT
1 TGCTGTCGATCCTGCTACCGCAACCCTCAGT
25172020 TCGGCTGGCG
Statistics
Matches: 159, Mismatches: 28, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
157 1 0.01
158 130 0.82
159 28 0.18
ACGTcount: A:0.23, C:0.32, G:0.23, T:0.22
Consensus pattern (158 bp):
TGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGGTCTAATCTTAGACTGAGAATCAACTCTGTA
TGCCTAACTCAACCCACGAAACGAGCATACGGGCGTTGACCCGACCGAAAAGTTATAATGCACAA
GCAGAGGACCGGCCCGATCCCCCCTACA
Found at i:25172906 original size:26 final size:25
Alignment explanation
Indices: 25172870--25172948 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
25172860 ACGGTTCGAT
*
25172870 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATCAACTCCGTATG
25172896 CTTAGACTGGGGATCAACTCCGTATG
1 CTTAGACT-GGGATCAACTCCGTATG
25172922 CTTAGACTAGGGATCAACTCCGTATG
1 CTTAGACT-GGGATCAACTCCGTATG
25172948 C
1 C
25172949 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 47 0.94
27 3 0.06
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGATCAACTCCGTATG
Found at i:25173606 original size:159 final size:159
Alignment explanation
Indices: 25173303--25173797 Score: 397
Period size: 159 Copynumber: 3.1 Consensus size: 159
25173293 ACTCCGTATG
* *
25173303 CTTAGA-CATGGAATGAACT-CCTCATGCCTAAGCCAACCCACGAAAC-GA-GCATGCAGGCGCT
1 CTTAGATCATGGAATGAACTCCCT-ATGCCTAAGCCAACCCACGAAACAGATG--TGCGGGCACT
* * * * ** * * * *** * * *
25173364 CAGTCGACTGGAGAGATAGAATGTGTAAGCC-GAGGACCTTTCTGATCACCCCTTGTGTGCTATC
63 CACTCGGCCGGAAAGGCAGAATGCGCAAGCCAG-GGATCGACCCGATC-CCCCCTGCGTGCTATC
* ** * *
25173428 GATCCTGCTGCCATGACCCTCGATCCGATCCAAT
126 GATCCCGCTGCCACAACCCTCGGTCCGATCCGAT
* * *
25173462 CTTAGATTA-GGAATGAAC-CCCGTATGCCTAAGTCAACCCACGAAACAAGA-GTGCGGGCACTG
1 CTTAGATCATGGAATGAACTCCC-TATGCCTAAGCCAACCCACGAAAC-AGATGTGCGGGCACTC
* * * * *
25173524 AC-CTGGCCGGAAAGGCATAATGTGCAAGCCAGGGATCGGCCC-AGTCCCCCTCTGCGTGCTGTT
64 ACTC-GGCCGGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGA-TCCCCC-CTGCGTGCTATC
* * **
25173587 GGTCCCGCTGCCACAACCCTCGGTCCGA-CTGGGG
126 GATCCCGCTGCCACAACCCTCGGTCCGATC-CGAT
* *
25173621 CTTAG-TCATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGATGTGCGGGCACTCAG
1 CTTAGATCATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGATGTGCGGGCACTCAC
* * * *
25173685 TCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
66 TCGGCCGGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
* * *
25173750 TGCTGCCGCAACCCTCGGTCCGGTCCGAT
131 CGCTGCCACAACCCTCGGTCCGATCCGAT
25173779 CTTAGA-C-TGGAAATGAACT
1 CTTAGATCATGG-AATGAACT
25173798 TCGTATGCTT
Statistics
Matches: 266, Mismatches: 52, Indels: 37
0.75 0.15 0.10
Matches are distributed among these distances:
157 3 0.01
158 61 0.23
159 191 0.72
160 8 0.03
161 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGATCATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGATGTGCGGGCACTCAC
TCGGCCGGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCC
CGCTGCCACAACCCTCGGTCCGATCCGAT
Found at i:25174309 original size:26 final size:25
Alignment explanation
Indices: 25174266--25174317 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
25174256 GGCTCAAACT
* *
25174266 CTTAGACTGGGATGAACTCTGTATG
1 CTTAGACTGGAATGAACTCCGTATG
25174291 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGAC-TGGAATGAACTCCGTATG
25174317 C
1 C
25174318 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:25175135 original size:159 final size:158
Alignment explanation
Indices: 25174850--25175138 Score: 341
Period size: 159 Copynumber: 1.8 Consensus size: 158
25174840 ACATAGAATG
*
25174850 AAGTCCGTATGCCTAGCCAACCCACGAAATGAGTGTGTGGGCACTCAGCCGGCCAGAGAGGCAGA
1 AAGTCCGTATGCCTAGCCAACCCACGAAATGAGCGTGTGGGCACTCAGCCGGCCAGAGAGGCAGA
* * * * * *
25174915 ATGCGTAAGTCAGGGACCAGCTCGGTCCCCCCCTGTGTGCTATCGATCCTACTATCGCAACCCTC
66 ATGCGCAAGCCAGGGACCAGCCCGATCCCCCCCTGTGTGCTATCGATCCTACTACCACAACCCTC
25174980 AATCCGGTCCTATCTTAGACTGGGATCA
131 AATCCGGTCCTATCTTAGACTGGGATCA
* ** * * **
25175008 AAGTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT-TCGGGTGCTGAGCTGGCTGGAGAGGCA
1 AAGTCCGTATGCCT-AGCCAACCCACGAAATGAGCGTGT-GGGCACTCAGCCGGCCAGAGAGGCA
* * * * * *
25175072 TAATGCGCAAGCCGGGGATC-GTCCCGATCCCCCTCTGTGTGCTATCGGTCCTGC-AGCCACAAC
64 GAATGCGCAAGCCAGGGACCAG-CCCGATCCCCCCCTGTGTGCTATCGATCCTACTA-CCACAAC
25175135 CCTC
127 CCTC
25175139 GGTCTGGCTG
Statistics
Matches: 107, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
158 17 0.16
159 90 0.84
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
AAGTCCGTATGCCTAGCCAACCCACGAAATGAGCGTGTGGGCACTCAGCCGGCCAGAGAGGCAGA
ATGCGCAAGCCAGGGACCAGCCCGATCCCCCCCTGTGTGCTATCGATCCTACTACCACAACCCTC
AATCCGGTCCTATCTTAGACTGGGATCA
Found at i:25175718 original size:26 final size:26
Alignment explanation
Indices: 25175689--25175741 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25175679 CCGGTCCAAT
25175689 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
25175715 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25175741 C
1 C
25175742 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25177056 original size:26 final size:26
Alignment explanation
Indices: 25177013--25177063 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25177003 TGGTCTGATC
*
25177013 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATAAACTCCATATGG
*
25177039 TTAGACTGGGGATAAACTCCATATG
1 TTAGACTGGGAATAAACTCCATATG
25177064 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCATATGG
Found at i:25178016 original size:26 final size:26
Alignment explanation
Indices: 25177980--25178032 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25177970 CCAGTTCGAT
25177980 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
25178006 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25178032 C
1 C
25178033 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25178473 original size:183 final size:184
Alignment explanation
Indices: 25178165--25178541 Score: 535
Period size: 183 Copynumber: 2.1 Consensus size: 184
25178155 GTCTTGCTAT
*
25178165 CACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCGTAGGCTTAGACATGGAATGAA
1 CACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCATAGGCTTAGACATGGAATGAA
* *
25178230 CTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAACTGGCCGGAGAGGCAGAA
66 CTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGAGCGCTCAACCGGCCGGAGAGGCAGAA
* * * **
25178295 TGCGCAAGCCGGGGATCGGCCTGGT-CCCC-CTGCGTGCTGTCGATCCTGCTAC
131 TGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCCCACTAC
* ** * * *
25178347 TACAACCCTCGATTTGGTCTGATCTTATACTGGGAATGAACTCCATATGCTTAGACATGGAATGA
1 CACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACT-CATAGGCTTAGACATGGAATGA
* * *
25178412 ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCT-AAGCCGGCTGGAGAGGCAT
65 ACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGAGCGCTCAA-CCGGCCGGAGAGGCAG
* * *
25178476 AATGCGCAAGTCGGGGATTGGCCCGATCCCCCTCTGCGTGCTGCCGGTCCCACTAC
129 AATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCCCACTAC
25178532 CACAACCCTC
1 CACAACCCTC
25178542 AGTCTGGCTG
Statistics
Matches: 170, Mismatches: 21, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
182 39 0.23
183 99 0.58
184 4 0.02
185 28 0.16
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (184 bp):
CACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCATAGGCTTAGACATGGAATGAA
CTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGAGCGCTCAACCGGCCGGAGAGGCAGAA
TGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCCCACTAC
Found at i:25178724 original size:26 final size:26
Alignment explanation
Indices: 25178687--25178738 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25178677 CGGTTCAATT
*
25178687 TTAGACTGGGAATGAACTCCTTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
25178713 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
25178739 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:25178898 original size:184 final size:183
Alignment explanation
Indices: 25178579--25178995 Score: 523
Period size: 184 Copynumber: 2.3 Consensus size: 183
25178569 GAAATGGGCA
* * * * * *
25178579 TGCAGGCGCTCAGCCAACTGGAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGGTCCCCCCTGC
1 TGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCGA-GGATCAGCCCAGTCCCCCCTAC
* * * * * *
25178644 GTGCTGTCGATCCTGCTGCCGCAACCCTCCGTTCGGTTCAATTTTAGACTGGGAATGAACTCCTT
65 GTGCTGTCGATCCTACTGCCGCAACCCTCAGTCCAGTTCAATCTTAGACTGGGAATGAACTCCGT
*
25178709 ATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CTAACCCACGAAACGAATG
130 ATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAACG
* * * * *
25178763 TGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCTCAGTCCCTCCTAC
1 TGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGC-GAGGATCAGCCCAGTCCCCCCTAC
* * **
25178828 GTGCTGTCGATCCTACTGCTGCCACCCTCAGTCCAGTTTGATCTTAGACTGGGAATGAACTCCGT
65 GTGCTGTCGATCCTACTGCCGCAACCCTCAGTCCAGTTCAATCTTAGACTGGGAATGAACTCCGT
* *
25178893 ATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
130 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACG
* * * *
25178947 TGCAGACGCTCAGCCGACCAGAGAGACAGGATGCGCAAGCCGAGGATCA
1 TGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG-CGAGGATCA
25178996 AACGGGTGTT
Statistics
Matches: 198, Mismatches: 31, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
183 1 0.01
184 194 0.98
185 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (183 bp):
TGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCGAGGATCAGCCCAGTCCCCCCTACG
TGCTGTCGATCCTACTGCCGCAACCCTCAGTCCAGTTCAATCTTAGACTGGGAATGAACTCCGTA
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACG
Found at i:25178906 original size:26 final size:26
Alignment explanation
Indices: 25178870--25178922 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25178860 CCAGTTTGAT
25178870 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25178896 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25178922 C
1 C
25178923 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25185535 original size:26 final size:26
Alignment explanation
Indices: 25185497--25185549 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25185487 GGCTCAAAAT
25185497 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25185523 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25185549 C
1 C
25185550 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25185822 original size:158 final size:158
Alignment explanation
Indices: 25185522--25185883 Score: 403
Period size: 158 Copynumber: 2.3 Consensus size: 158
25185512 AACTCCGTAT
* * * * *
25185522 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
* * *
25185587 CTGGCCAGAGAGGCAGAATGTGCAAGCTAGGGATCGACCCGATCCACCCTGCGTGCTGTCGATCC
66 CTGGCCAGAGAGGCAGAATGCGCAAGCCAGAGATCGACCCGATCCACCCTGCGTGCTGTCGATCC
* * *
25185652 TGCTGTCGCAACCCTCGGTCTGGTCT-GA
131 CGCTGCCACAACCCTCGGTCTGG-CTGGA
* * *
25185680 TCTTAGAC-TAGGAATGAACTCCATATGCATAA-CTCAACCCACGAAACGAACGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGC-CAACCCACGAAACGAACGTGCGGGCGCTC
** * * * * *
25185743 AGCTGATC-GAAGAGGCATAATGCGCAAGCCA-AGATTGGCCCGATCCCCCTCTGTGTGCTG-CA
64 AGCTGGCCAG-AGAGGCAGAATGCGCAAGCCAGAGATCGACCCGATCCACC-CTGCGTGCTGTC-
* * *
25185805 GGTCCCGCTGCCACAACCCTCGGTTTGGCTGGG
126 GATCCCGCTGCCACAACCCTCGGTCTGGCTGGA
*
25185838 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAA
25185884 TGACCTGAGA
Statistics
Matches: 169, Mismatches: 27, Indels: 16
0.80 0.13 0.08
Matches are distributed among these distances:
157 20 0.12
158 147 0.87
159 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
CTGGCCAGAGAGGCAGAATGCGCAAGCCAGAGATCGACCCGATCCACCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCGGTCTGGCTGGA
Found at i:25186553 original size:26 final size:26
Alignment explanation
Indices: 25186515--25186567 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25186505 GGCTCAAAAT
*
25186515 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25186541 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25186567 C
1 C
25186568 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25186903 original size:26 final size:26
Alignment explanation
Indices: 25186858--25186910 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25186848 TTGGTCCAAT
25186858 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
25186884 CTTAGACTGGGGATGGACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25186910 C
1 C
25186911 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25187767 original size:26 final size:26
Alignment explanation
Indices: 25187738--25187790 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25187728 CCAATCCGAT
* *
25187738 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
25187764 CTTACACTGGGGATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
25187790 C
1 C
25187791 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:25189692 original size:158 final size:156
Alignment explanation
Indices: 25189191--25189692 Score: 444
Period size: 158 Copynumber: 3.2 Consensus size: 156
25189181 ACTCTGTATG
* * * * * *
25189191 CTTAGACAT-GGAATGAACTTTGTATGCCTAAGCCAACCCATAAAATGAGTGTGCAGGCACTCAG
1 CTTAGA-ATGGGAATGAACTCTATATGCCTAAGCCAACCTATAAAACGAGCGTGCAGGCGCTCAG
* * * * * * * *
25189255 CCGGTCGGAGTGGCAGAATGAGCAATCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTTGATCC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATCC
*
25189320 TAGT--GTCATACCCTCAGTCCGGTCCT-AT
130 TACTCCG-CA-ACCCTCAGT-CGGT-CTGAT
* * * * *
25189348 CTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCTATAAAACGAGCGTGCGGGCGCTGAG
1 CTTAGAATGGGAATGAACTCT-ATATGCCTAAGCCAACCTATAAAACGAGCGTGCAGGCGCTCAG
* * * * *
25189412 CACGGCCGAAGAGGCATAATGCGCAAG-TCGGGGATCGGCCCGATCCCTCTCTACGTGCTGTCGG
65 C-CGGCCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGGCCCGGTCCCCCT-TGCGTGCTGTC-G
* * * * * * **
25189476 TTCC-GCTGCCACAACCCTCAATCCGACTGGGG
126 ATCCTACT-CCGCAACCCTCAGTCGGTCT-GAT
** * *
25189508 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCTATGAAACGGGCGTGCAGGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCTATATGCCTAAGCCAACCTATAAAACGAGCGTGCAGGCGCTCAG
*
25189572 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCTGGTCCCCCTTGCGTGCTGTCGATCC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATCC
*
25189637 TACTACCGCAACCCTCGGTCTGGTCTGAT
130 TACT-CCGCAACCCTCAGTC-GGTCTGAT
* *
25189666 CTTAGATTGGGAATGAGCTCTATATGC
1 CTTAGAATGGGAATGAACTCTATATGC
25189693 TTAGACCAGG
Statistics
Matches: 270, Mismatches: 58, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
156 2 0.01
157 58 0.21
158 84 0.31
159 56 0.21
160 67 0.25
161 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (156 bp):
CTTAGAATGGGAATGAACTCTATATGCCTAAGCCAACCTATAAAACGAGCGTGCAGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTTGCGTGCTGTCGATCCT
ACTCCGCAACCCTCAGTCGGTCTGAT
Found at i:25191035 original size:317 final size:316
Alignment explanation
Indices: 25190411--25191230 Score: 1017
Period size: 317 Copynumber: 2.6 Consensus size: 316
25190401 AACTCCGTAT
* *
25190411 GCTTAGACATGGAATGATCTCCGTGTGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAA
** *
25190476 CCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCGGTGCCCCCCAACGTG-TTATCGAT
66 CCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCGGT-CCCCCCTGCGTGCTTCT-GAT
** * * * *
25190540 CCTACTGCCATAA-CCTTCGTTCCGGTCTAATCTTATACTGGGAATGAACT-TCGTATACATAAG
129 CCTACTGCCGCAACCCTT-GATCCGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCATAAG
* * * *
25190603 TCAACCCACGAAACGAGTGTGCGGGCGTTGAGCCGACTGAAGAGGCATAATGCGTAAGCCAGGGA
192 TCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGACTGAAGAGGCATAATACGCAAGCCAGGGA
* * ** * * *
25190668 TCAGCCCGGTCCTCCTCTACGGGCTGTCGGTCCCGCTGCCCAATCCTCGGTCC-GACTGGG
257 TCAGCCCAGTCCCCCTCTACGGGCTGTCAATCCCACTGCCCAACCCTCGGTCCAG-CTGCG
* * * *
25190728 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAA
* * * * *
25190793 CCGGCCGGAGAGGCAGACTGTGCAAGTCAGGGATCTGCCTGGTCCCCCCTGCGTGCTTCTGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCCTGCGTGCTTCTGATCC
* * * * *
25190858 TGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGGCTGGGAATGAACTCTGTATGCCTAAGTCAA
131 TACTGCCGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAA
* ** *
25190923 CCCATC-AAACGAGCGTGCGGGCGTTCAGTCGACTGGAA-AGGCATAATACGCAAGCTGGGGATT
196 CCCA-CGAAACGAGCGTGCGGGCGTTCAGCCGACT-GAAGAGGCATAATACGCAAGCCAGGGATC
* * * *
25190986 AGCCCAGTCCCCCTCTGCGTGCTGTCAATCCTACTGCCACAACCCTCGGTCCAGTTGCG
259 AGCCCAGTCCCCCTCTACGGGCTGTCAATCCCACTGCC-CAACCCTCGGTCCAGCTGCG
* * * *
25191045 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAATCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAA
* * *
25191110 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTC-GATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCCTGCGTGCT-TCTGATC
* *
25191174 CTACTGCCGCAACCCTCT-ATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
130 CTACTGCCGCAACCCT-TGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
25191231 TTAGACATGG
Statistics
Matches: 430, Mismatches: 64, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
316 142 0.33
317 284 0.66
318 4 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAA
CCGGTCGGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCCTGCGTGCTTCTGATCC
TACTGCCGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAA
CCCACGAAACGAGCGTGCGGGCGTTCAGCCGACTGAAGAGGCATAATACGCAAGCCAGGGATCAG
CCCAGTCCCCCTCTACGGGCTGTCAATCCCACTGCCCAACCCTCGGTCCAGCTGCG
Found at i:25191224 original size:158 final size:157
Alignment explanation
Indices: 25190412--25191230 Score: 749
Period size: 158 Copynumber: 5.2 Consensus size: 157
25190402 ACTCCGTATG
* * *
25190412 CTTAGACATGGAATGATCTCCGTGTGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
* * ** * *
25190477 CGGTCGGAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCGGTGCCCCCCAACGTGTTATCGATCC
66 C-GACGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGT-CCCCCCTGCGTGCTGTCGATCC
* * **
25190542 TACTGCCATAACCTTC-GTTCCGGTCTAAT
129 TACTGCCACAACCCTCTG-TCCGGTCCGAT
* * * * * * *
25190571 CTTATAC-TGGGAATGAACTTCGTATACATAAGTCAACCCACGAAACGAGTGTGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * * * * * *
25190635 CCGACTGAAGAGGCATAATGCGTAAGCCAGGGATCAGCCCGGTCCTCCTCTACGGGCTGTCGGTC
65 CCGAC-GGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCC-CCCCTGCGTGCTGTCGATC
** * * * * **
25190700 CCGCTGCC-CAATCCTCGGTCC-GACTGGGG
128 CTACTGCCACAACCCTCTGTCCGGTC-CGAT
* * *
25190729 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
* * * * * *
25190794 CGGCCGGAGAGGCAGACTGTGCAAGTCAGGGATCTGCCTGGTCCCCCCTGCGTGCT-TCTGATCC
66 C-GACGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGTC-GATCC
* * * *
25190858 TGCTGCCGCAACCCT-TGGTCTGGTCTGAT
129 TACTGCCACAACCCTCT-GTCCGGTCCGAT
* * * * *
25190887 CTTAGGC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATC-AAACGAGCGTGCGGGCGTTCA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-CGAAACGAGTGTGCGGGCGCTCA
* * * * ** * * *
25190950 GTCGACTGGAAAGGCATAATACGCAAGCTGGGGATTAGCCCAGTCCCCCTCTGCGTGCTGTCAAT
64 GCCGAC-GGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGAT
* * * *
25191015 CCTACTGCCACAACCCTCGGTCCAGTTGCG-G
127 CCTACTGCCACAACCCTCTGTCC-GGTCCGAT
* * * * *
25191046 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAATCCATGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
*
25191111 CGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
66 CGA-CGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
* *
25191176 ACTGCCGCAACCCTCTATCCGGTCCGAT
130 ACTGCCACAACCCTCTGTCCGGTCCGAT
25191204 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
25191231 TTAGACATGG
Statistics
Matches: 520, Mismatches: 117, Indels: 47
0.76 0.17 0.07
Matches are distributed among these distances:
156 2 0.00
157 29 0.06
158 250 0.48
159 232 0.45
160 7 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
CGACGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTA
CTGCCACAACCCTCTGTCCGGTCCGAT
Found at i:25191233 original size:26 final size:26
Alignment explanation
Indices: 25191204--25191256 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25191194 CCGGTCCGAT
25191204 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
25191230 CTTAGACATGGAATTAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25191256 C
1 C
25191257 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25191354 original size:184 final size:184
Alignment explanation
Indices: 25191045--25191414 Score: 562
Period size: 184 Copynumber: 2.0 Consensus size: 184
25191035 TCCAGTTGCG
* * *
25191045 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAATCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGCGCGGGTGCTCAA
* * * * ** *
25191110 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGATCGGAGAGGCAGAATGCACAAACCAGGGACCGACCCAATCCCCCCTACGTGCTGTCGATCC
* *
25191175 TACTGCCGCAACCCTCTA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
131 TACTACCGCAACCCTC-AGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTAT
*
25191229 GCTTAGACATGGAATTAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGCGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGCGCGGGTGCTCAA
* *
25191294 CCGATCGGAGAGGCAGAATGCACAAATCGGGGACCGACCCAATCCCCCCTACGTGCTGTCGATCC
66 CCGATCGGAGAGGCAGAATGCACAAACCAGGGACCGACCCAATCCCCCCTACGTGCTGTCGATCC
* * *
25191359 TGCTACCGCAACCCTCAGTTCGGTTCGATCTTAGACTAGGAATGAACTCCGTAT
131 TACTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTAT
25191413 GC
1 GC
25191415 CTAAATCAAC
Statistics
Matches: 167, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
183 1 0.01
184 166 0.99
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGCGCGGGTGCTCAA
CCGATCGGAGAGGCAGAATGCACAAACCAGGGACCGACCCAATCCCCCCTACGTGCTGTCGATCC
TACTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:25191593 original size:159 final size:158
Alignment explanation
Indices: 25191229--25191626 Score: 422
Period size: 159 Copynumber: 2.5 Consensus size: 158
25191219 AACTCCGTAT
* * * ** *
25191229 GCTTAGACATGGAATTAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGCGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGACGCTCAG
* * *
25191294 CCGATCGGAGAGGCAGAATGCACAAATCGGGGACCGACCCAATCCCCCCTACGTGCTGTCGATCC
66 CCGACCAGAGAGGCAGAATGCACAAATCGGGGACCGACCCAATCCCCCCTACGTGCTGCCGATCC
** * * *
25191359 TGCTACCGCAACCCTCAGTTCGGTTCGA
131 CACTACCACAACCCTCAGTCCGGCTCGA
* * * * *
25191387 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAATCAACTCACGAAACGAGCGTGTGGACGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGACGCTCA
* * * ** * * *
25191451 GCCGACCTGAGAGGCATAATGCAC-AAGCTGGGGAGTGACCCGATCCCCCTCTGCGTGCTGCCGG
65 GCCGACCAGAGAGGCAGAATGCACAAATC-GGGGACCGACCCAATCCCCC-CTACGTGCTGCCGA
* * * *
25191515 TCCCACTGCCACAACCCTCGGTCCGGCTGGG
128 TCCCACTACCACAACCCTCAGTCCGGCTCGA
* * * * * *
25191546 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGCCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGACGCTCAG
25191611 CCGACCAGAGAGGCAG
66 CCGACCAGAGAGGCAG
25191627 GATGTGCAAG
Statistics
Matches: 193, Mismatches: 43, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
157 4 0.02
158 89 0.46
159 99 0.51
160 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGACGCTCAG
CCGACCAGAGAGGCAGAATGCACAAATCGGGGACCGACCCAATCCCCCCTACGTGCTGCCGATCC
CACTACCACAACCCTCAGTCCGGCTCGA
Found at i:25192623 original size:159 final size:158
Alignment explanation
Indices: 25192267--25192629 Score: 385
Period size: 158 Copynumber: 2.3 Consensus size: 158
25192257 AACTCTGTAT
* *
25192267 GCTTAGGCATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCACTCAG
* * * * * *
25192332 CCAGCCGGAGAGGTAGAATGTGCAAGCCAGGGATCGACTCGGTCCCCCCTGCGTGCTGTGGATCC
66 CCAGCCGAAGAGGCAGAATGTGCAAGCCAGGGATCAACCCGGTCCCCCCTGCGTGCTATCGATCC
* ** *
25192397 TGCTGCCGCAACCCTTGGTCTGGTTTGA
131 TGCTGCCACAACCCTTGGTCTGACTGGA
* * * * * * ** *
25192425 TCTTAGACTAT-GAATGAACTTCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGTTGA
1 GCTTAGAC-ATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCACTCA
* * * * *
25192489 GCCGGTCGAAGAGGCATAATGTGTAAGTC-GAGGATCAACCCGGTCCCCCTCTGCGTGCTATCGA
65 GCCAGCCGAAGAGGCAGAATGTGCAAGCCAG-GGATCAACCCGGTCCCCC-CTGCGTGCTATCGA
*
25192553 T-CTCGCTGCCACAA-CCTTCGGT-TCGACTGGG
128 TCCT-GCTGCCACAACCCTT-GGTCT-GACTGGA
*
25192584 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAA
25192630 CAGGCATGCA
Statistics
Matches: 166, Mismatches: 32, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 1 0.01
158 97 0.58
159 68 0.41
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCACTCAG
CCAGCCGAAGAGGCAGAATGTGCAAGCCAGGGATCAACCCGGTCCCCCCTGCGTGCTATCGATCC
TGCTGCCACAACCCTTGGTCTGACTGGA
Found at i:25192692 original size:159 final size:159
Alignment explanation
Indices: 25192267--25192697 Score: 428
Period size: 159 Copynumber: 2.7 Consensus size: 159
25192257 AACTCTGTAT
* * *
25192267 GCTTAGGCATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
* * *
25192332 CC-AGCCGGAGAGGTAGAATGTGCAAGCCAGGGATCGACTCGGTCCCCC-CTGCGTGCTGTGGAT
66 CCGA-TCGGAGAGGTAGAATGTGCAAGCCAGGGATCGACTCGGTCCCCCTCTGCGTGCTATCGAT
* ** *
25192395 CCTGCTGCCGCAACCCTTGGTCTGGTTTGA
130 CCTGCTGCCACAACCCTTGGTCTGACTGGA
* * * * * * * *
25192425 TCTTAGACTAT-GAATGAACTTCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGTTGA
1 GCTTAGAC-ATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCA
* * * * * * * *
25192489 GCCGGTCGAAGAGGCATAATGTGTAAGTC-GAGGATCAACCCGGTCCCCCTCTGCGTGCTATCGA
65 GCCGATCGGAGAGGTAGAATGTGCAAGCCAG-GGATCGACTCGGTCCCCCTCTGCGTGCTATCGA
*
25192553 T-CTCGCTGCCACAA-CCTTCGGT-TCGACTGGG
129 TCCT-GCTGCCACAACCCTT-GGTCT-GACTGGA
* * * *
25192584 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-CAGGCATGCAGGTGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGA-GCATGCGGGCGCTCA
* ** *
25192648 ACCGATCGGAGAGGTAGAATGCACAAGCCAGGGATCGATTCGGTCCCCCT
65 GCCGATCGGAGAGGTAGAATGTGCAAGCCAGGGATCGACTCGGTCCCCCT
25192698 ACATGCTGCC
Statistics
Matches: 213, Mismatches: 50, Indels: 19
0.76 0.18 0.07
Matches are distributed among these distances:
157 1 0.00
158 97 0.46
159 114 0.54
160 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
CCGATCGGAGAGGTAGAATGTGCAAGCCAGGGATCGACTCGGTCCCCCTCTGCGTGCTATCGATC
CTGCTGCCACAACCCTTGGTCTGACTGGA
Found at i:25192771 original size:26 final size:26
Alignment explanation
Indices: 25192742--25192794 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25192732 CCAGTCTGAT
25192742 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
*
25192768 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
25192794 C
1 C
25192795 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:25193488 original size:26 final size:26
Alignment explanation
Indices: 25193450--25193502 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25193440 CCGATTCGAT
*
25193450 CTTAGACTGGGAATGAACTCTGAATG
1 CTTAGACTGGGAATAAACTCTGAATG
*
25193476 CTTAGACAT-GGAATAAACTCTGTATG
1 CTTAGAC-TGGGAATAAACTCTGAATG
25193502 C
1 C
25193503 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGAATG
Found at i:25193663 original size:26 final size:26
Alignment explanation
Indices: 25193634--25193686 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25193624 CTGGTCCGAT
*
25193634 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
25193660 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
25193686 C
1 C
25193687 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:25193741 original size:13 final size:13
Alignment explanation
Indices: 25193723--25193750 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
25193713 CGAGCGCTCA
25193723 GCTGGTCGGAGAG
1 GCTGGTCGGAGAG
25193736 GCTGGTCGGAGAG
1 GCTGGTCGGAGAG
25193749 GC
1 GC
25193751 ATAATGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.18, G:0.54, T:0.14
Consensus pattern (13 bp):
GCTGGTCGGAGAG
Found at i:25194039 original size:26 final size:26
Alignment explanation
Indices: 25194001--25194050 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
25193991 CCGATCTAAT
*
25194001 CTTAGAATGGGAATTAACTCCATACA
1 CTTAGAATGGGAATGAACTCCATACA
25194027 CTTAGACAT-GGAATGAACTCCATA
1 CTTAGA-ATGGGAATGAACTCCATA
25194051 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATACA
Found at i:25194536 original size:26 final size:26
Alignment explanation
Indices: 25194500--25194552 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25194490 CTGGTCCGAT
*
25194500 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25194526 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25194552 C
1 C
25194553 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25195677 original size:12 final size:12
Alignment explanation
Indices: 25195660--25195692 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
25195650 CCCCCTTGCG
25195660 TGCTGCCGCTCC
1 TGCTGCCGCTCC
25195672 TGCTGCTCG-TCC
1 TGCTGC-CGCTCC
25195684 TGCTGCCGC
1 TGCTGCCGC
25195693 AACCCTCGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 2 0.11
12 15 0.79
13 2 0.11
ACGTcount: A:0.00, C:0.45, G:0.27, T:0.27
Consensus pattern (12 bp):
TGCTGCCGCTCC
Found at i:25195742 original size:26 final size:26
Alignment explanation
Indices: 25195713--25195765 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25195703 TCGGTCCGAT
*
25195713 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
25195739 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
25195765 C
1 C
25195766 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:25195941 original size:197 final size:194
Alignment explanation
Indices: 25195542--25196066 Score: 631
Period size: 197 Copynumber: 2.7 Consensus size: 194
25195532 TCTGGCTGGG
* * * *
25195542 GCTTAGACATGGAATGAACACCCTATGCCTAAGCCAACCCATGGAATGGGCGTAC-AGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACGA-GCGCTCA
* * * * * * * * *
25195606 GTCGACCGGAGAGGCAGAATGTGCAAGCCGGGGATTGGCCCAGTCCCCCTTGCGTGCTGCCGCTC
65 GCCGATCGGAGAGGTAGAATGCGCAAGCCGGGGA-TCGACCGGTCCCCC-TGCGTGCTGTCGATC
* * * *
25195671 CTGCTGCTCGTCCTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGT
128 CTGCTACTCGTCCTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGT
*
25195736 AT
193 AC
* * * * *
25195738 GCTTAGACATGGAATGAACTCCATATGCCAAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACGAGCGCTCAG
* * *
25195803 CCGATCGGAGAGGTAAAATGCGCAAGTCGGGGATCGACTCGGTCCCTCACTGCATGCTGTCGATC
66 CCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGAC-CGGTCCC-C-CTGCGTGCTGTCGATC
* * * *
25195868 CTGCTACTGGTGCTGCTGCTGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCTGT
128 CTGCTACTCGTCCTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGT
25195933 AC
193 AC
* * *
25195935 GCTTAGACATGGAATGAACTCCATATGCCTAAGGCAACCCATGAAATGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACGAGCGCTCAG
* * * * *
25196000 CTGGTCAGAGAGGTAGAA-GCGCAAGCCGAGGATCGACCTGGTCCCCCTACGTGCTGTCGATCCT
66 CCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACC-GGTCCCCCTGCGTGCTGTCGATCCT
25196064 GCT
130 GCT
25196067 GCCACAACCC
Statistics
Matches: 278, Mismatches: 46, Indels: 12
0.83 0.14 0.04
Matches are distributed among these distances:
194 19 0.07
195 5 0.02
196 110 0.40
197 143 0.51
198 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (194 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACGAGCGCTCAG
CCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCGGTCCCCCTGCGTGCTGTCGATCCTG
CTACTCGTCCTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTAC
Found at i:25196452 original size:26 final size:26
Alignment explanation
Indices: 25196409--25196486 Score: 95
Period size: 26 Copynumber: 3.0 Consensus size: 26
25196399 CGGTCTGATT
* *
25196409 TTAGACTGGGAATAAACTTCGTATGC
1 TTAGACTGGGGATGAACTTCGTATGC
*
25196435 TTAGATTGGGGATGAAC-TCTGTATGC
1 TTAGACTGGGGATGAACTTC-GTATGC
* *
25196461 TTAAACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGGATGAACTTCGTATGC
25196487 CTAAGTCAAC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
25 2 0.05
26 41 0.93
27 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGGATGAACTTCGTATGC
Found at i:25196682 original size:26 final size:26
Alignment explanation
Indices: 25196631--25196683 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25196621 CTGGTCTGAT
**
25196631 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
25196657 CTTAGAC-ATGGAATGAACTCCATATG
1 CTTAGACTA-GGAATGAACTCCATATG
25196683 C
1 C
25196684 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:25197522 original size:26 final size:26
Alignment explanation
Indices: 25197493--25197545 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25197483 TTGATCCGAT
25197493 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
25197519 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25197545 C
1 C
25197546 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25198200 original size:159 final size:158
Alignment explanation
Indices: 25197897--25198400 Score: 527
Period size: 159 Copynumber: 3.2 Consensus size: 158
25197887 GAACTCCTAT
* * *
25197897 TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACT-AAACGAGCGTACGGGCGCTCA
1 TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCAATGAAAGGAGCGTGCGGGCGCTCA
* * * * * * *
25197961 GTCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCCTGCGTGCTATCGAT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGT-CCCCCCTGCGTGCTGTCGAT
* *
25198026 CCTGCTATCGTAACCCTTGGTCCGGTCTGA
129 CCTGCTGTCGCAACCCTTGGTCCGGTCTGA
* * * *
25198056 TCTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAACCAATGAAAGGAGCGTGCGGGTGCTGA
1 TCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAATGAAAGGAGCGTGCGGGCGCTCA
* * * ** * *
25198120 GCCGATCGGAGAGGCATAATGCGCAACCCGAAGATCGGCCTGGTCCCCCTCTGCGTGCTGCCGGT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCC-CTGCGTGCTGTCGAT
* * * * * *
25198185 CCCGCTGCCACAACCCTCT-GT-CTGACTGGG
129 CCTGCTGTCGCAACCCT-TGGTCCGGTCT-GA
* * * * *
25198215 GCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGG-GCGTGCGGGCGCTCA
1 TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAA-GGAGCGTGCGGGCGCTCA
* * * *
25198279 GCCGGTCGGAAAGGCAGAATGTGTAAGCCGGGGATTGGCCTGGTCCCCCCTGCGTGCTGTCGATC
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATC
25198344 CTGCTGTCGCAACCCTTGGTCCGGTTCT-A
130 CTGCTGTCGCAACCCTTGGTCCGG-TCTGA
*
25198373 TCTTACAC-TGGGAATGAACTCCGTATGC
1 TCTTAGACAT-GGAATGAACTCCGTATGC
25198401 TTAGACTAGG
Statistics
Matches: 275, Mismatches: 59, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 65 0.24
159 202 0.73
160 6 0.02
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (158 bp):
TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAAGGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGTCGCAACCCTTGGTCCGGTCTGA
Found at i:25198403 original size:26 final size:26
Alignment explanation
Indices: 25198374--25198423 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
25198364 CCGGTTCTAT
*
25198374 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
*
25198400 CTTAGACTAGGAATGAACTCCGTA
1 CTTACACTAGGAATGAACTCCGTA
25198424 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:25200542 original size:27 final size:27
Alignment explanation
Indices: 25200512--25200564 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
25200502 CAAAGGGAAG
* *
25200512 GACCGTGATCGGGAGTCCAAGGATGGA
1 GACCGTGACCGAGAGTCCAAGGATGGA
25200539 GACCGTGACCGAGAGTCCAAGGATGG
1 GACCGTGACCGAGAGTCCAAGGATGG
25200565 CGAGAGGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.40, T:0.13
Consensus pattern (27 bp):
GACCGTGACCGAGAGTCCAAGGATGGA
Found at i:25205806 original size:26 final size:27
Alignment explanation
Indices: 25205768--25205825 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
25205758 CCGATCCGAT
25205768 CTTAGACTGGGAATGAACTCCATATG-
1 CTTAGACTGGGAATGAACTCCATATGC
*
25205794 CTTAGACAT-GGAATGAACTCCGTATGC
1 CTTAGAC-TGGGAATGAACTCCATATGC
25205821 CTTAG
1 CTTAG
25205826 CCAACGCACA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCATATGC
Found at i:25206124 original size:159 final size:158
Alignment explanation
Indices: 25205793--25206156 Score: 365
Period size: 159 Copynumber: 2.3 Consensus size: 158
25205783 AACTCCATAT
* * *
25205793 GCTTAGACATGGAATGAACTCCGTATGCCTTAGCCAACGCACAAAACAAGCGTGCGGGGCACTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGGCACTCA
* * * * * *
25205858 GTCGACCGAAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGGTCCCTCTGCATGCTGTCGATAC
66 GCCGAACGAAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCTCTACATGCTGTCGATAC
* * *
25205923 TGCTGCCAAAACCCTCGGTTCGATCTGA
131 CGCTGCCAAAACCCTCAGTCCGATCTGA
* * ** ** * * * *
25205951 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCATTAAATGAGTGTTC-GGGCATTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGGCACTC
* * ** *
25206014 AGCCGAACGGAGAGGCATAATGCGCAAGCCAAGGATTGGCCCGATCCCCTTCTACATGCTGTCGG
65 AGCCGAACGAAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGAT-CCC-TCTACATGCTGTCGA
* * * *
25206079 TCCCGCTGCCACAACCCTTAGTCCGA-CTGGG
128 TACCGCTGCCAAAACCCTCAGTCCGATCT-GA
* * *
25206110 GCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGAAAC
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAAC
25206157 GGACGTGCAA
Statistics
Matches: 163, Mismatches: 38, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
157 43 0.26
158 47 0.29
159 72 0.44
160 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.25, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGGCACTCA
GCCGAACGAAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCTCTACATGCTGTCGATAC
CGCTGCCAAAACCCTCAGTCCGATCTGA
Found at i:25206298 original size:26 final size:26
Alignment explanation
Indices: 25206269--25206321 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25206259 CCGATTCGAT
* *
25206269 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25206295 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25206321 C
1 C
25206322 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25206677 original size:26 final size:26
Alignment explanation
Indices: 25206648--25206698 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
25206638 CCGGTCTGAT
25206648 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25206674 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
25206699 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25206907 original size:880 final size:849
Alignment explanation
Indices: 25204915--25206921 Score: 2110
Period size: 880 Copynumber: 2.3 Consensus size: 849
25204905 GTGGCTCAAA
* * *
25204915 ATCTTAGAATGGGAATGAACTCCGTATGCTTAGACATTGAATGAACTCCGTATGCCTAAGCTAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* ** * * * *
25204980 CCACGAAACGAGCGTGCGAGCGTTCAGCTGGCCGAAGAGGCAGAATGCGCAAGTCAGGGATTGGC
66 CCACGAAACGAGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGC
* * *** * * *
25205045 CTGATCCCCCCTACGTGCTGTCGATCTTGCTGTTGCAACTCTCGATCCGGT-TGGATCTTAGACT
131 CAG-TCCCCCCTGCGTGCTGTCGATCTTGCTGCCACAACCCTCG-TTCGATCT-GATCTTAGACT
* * ** * *
25205109 GGGAATAAACTCTGTACGTATAAGTCAACCCATGAAACGAGCGTGT-GGGCACTGAGCCGGCCGA
193 GGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGT-TCGGGCATTGAGCCGGCCGG
* * * * * *
25205173 AGAGGCATAATGCGTAAGCCGAGGATTGGCCCGATCCTCGCTGCCATAACCCTCGGTTCGGCTGG
257 AGAGGCATAATGCGCAAGCCAAGGATTGGCCCGATCCTCGCTGCCACAACCCTCAGTCCGACTGG
* * ** *
25205238 GGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATAAAACGGGTGTGCAGGCACTCA
322 GGCTTAGACATGGAATGAACTCCCTATGACTAAACCAACCCACAAAACGGACGTGCAAGCACTCA
* * * * *
25205303 ACCGACTGAAGAGGCAGAATGTGTAAGCCGGGGATCAGCCTGGTCCCCCCCTGCGTGCTATCGAT
387 ACCGACTGAAGAGGCAGAAAGTGCAAGCCGGGGATCAGCCTGGTCCCCCCCTACATGCTACCGAT
** *
25205368 CCTGTGGTCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
452 CCTGTGACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * *
25205433 AGGGATGAACTCCATTTGCCTAAGTCAACCTATGAACCGAGCATACGGTCGCTCAGCCGATCAAA
517 AGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATACGGACGCTCAGCCGACCAAA
* * * * *
25205498 AAGGTCGACTGGAAAGGCATAATACGTAAGCCGGGGATCAGCTCGGTCCCTCTCTGTGTGCTGCC
582 AAGGTCGACTGAAAAGGCATAATACGCAAGCCAGGGATCAACTCGGTCCCTCTCTGTGTGCTACC
**
25205563 GATCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATCAAATGAACTCCATATGCCTAA
647 GATCCTGCTGCCACAACCCTCGGTCCAGCTAAGGCTTAGACATCAAATGAACTCCATATGCCTAA
* * * *** * * * * *
25205628 GCGAACCGATGAAACGAGCGGGCAAGTGCTCGGCCGGCCGGAGATATAGAATGCGCAAGTCGGGG
712 GCGAACCCACGAAACGAGCGGCCAAGTGAGAGGCCGGCCGGAGAGACAAAATACGCAAGCCGGGG
* *** * * * *
25205693 CTCGGTTCGGTCCCTCCTACGTGTTGTCGATCCTGCTGCTGGTCTTGCTACCGTAACCTTCGATC
777 ATCGACCCGGTCCCTCCTACGTGCTGTCGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGATC
25205758 CCGATCCG
842 CCGATCCG
* *
25205766 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTTAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
25205831 GCACAAAACAAGCGTGCGGGGCACTCAGTCGACCGAAGAGGCAGAATGCGTAAGCC-GAGGATCA
66 CCACGAAACGAGCGTGC-GGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAG-GGATC-
* * * * *
25205895 GCCCGGT-CCCTCTGCATGCTGTCGATAC-TGCTGCCAAAACCCTCGGTTCGATCTGATCTTAGA
128 GGCCAGTCCCCCCTGCGTGCTGTCGAT-CTTGCTGCCACAACCCTC-GTTCGATCTGATCTTAGA
** * * * **
25205958 CTGGGAATGAACTCCATATGCCTAAGTCAACCCATTAAATGAGTGTTCGGGCATTGAGCCGAACG
191 CTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCATTGAGCCGGCCG
25206023 GAGAGGCATAATGCGCAAGCCAAGGATTGGCCCGATCCCCTTCTACATGCTGTCGGTCCCGCTGC
256 GAGAGGCATAATGCGCAAGCCAAGGATTGGCCCG------------AT-C---C--T--CGCTGC
* * *
25206088 CACAACCCTTAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACG
301 CACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAACCAACCCACA
* * * * **
25206153 AAACGGACGTGCAAGCGCTCAGCC-AGTTAGAGAGGCAGAAAGTGCAAGCCGGGGATCCATTC-G
366 AAACGGACGTGCAAGCACTCAACCGACTGA-AGAGGCAGAAAGTGCAAGCCGGGGAT-CAGCCTG
* * * * *
25206216 GT-CCCCCTTACATGCTACCGATCCTGCT-ACCGTAACCCTTGGTCCGATTCGATCTTAGACTGG
429 GTCCCCCCCTACATGCTACCGATCCTG-TGACCGCAACCCTCGGTCCGATCCAATCTTAGACTGG
* * * * *
25206279 GAATGAATTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAG
493 GAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAG
* * * * * * ** ** *
25206344 CGTGCGGACGCTCAGTCGGCCAGAGAGGTCGGTTGAAAAGGCATAATGTGCAAGCTAGGGATCAA
558 CATACGGACGCTCAGCCGACCAAAAAGGTCGACTGAAAAGGCATAATACGCAAGCCAGGGATCAA
* * * *
25206409 CTCGGTCCCCCTCTACGTGCTGTCGATCCCACTATCGGTCCTGTTGCCACAACCCTTGGTCCAGC
623 CTCGGT--CCCTCT-C-TG-TGT-G------CTACCGATCCTGCTGCCACAACCCTCGGTCCAGC
** * * * * **
25206474 TAAGGCTTAGACATGGAATGAACTCCGTTTGCCTAAGCTAACCCACGAAACGAGCGTCCGGGTGA
676 TAAGGCTTAGACATCAAATGAACTCCATATGCCTAAGCGAACCCACGAAACGAGCGGCCAAGTGA
* * * * * *
25206539 GAGGCCGGTCGGAGAGGCAAAATACGTAAGCCTGGGATCGACCCGGTCCCT-TTACGTGCTGTTG
741 GAGGCCGGCCGGAGAGACAAAATACGCAAGCCGGGGATCGACCCGGTCCCTCCTACGTGCTGTCG
* * *
25206603 ATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGAT-CCGGTCTG
806 ATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGATCCCGATCCG
* *
25206646 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
25206711 CCACGAAATGAGCGTGCGGGCACTCAGCCGATCGAAGAGGTAGAATGCGCAAGCCAGGGATCGGT
66 CCACGAAACGAGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGG-
* * *
25206776 CCAGTCCCCCCTGTGTGCTGTGGATCTTGCTACCACAACCCTCAGTTCGATCTGATCTTAGACTG
130 CCAGTCCCCCCTGCGTGCTGTCGATCTTGCTGCCACAACCCTC-GTTCGATCTGATCTTAGACTG
* * * *
25206841 GGAATGAACTCTGTATGCCTAAGTCAACCCACGGAACGAGCGTTCGGGCGTTAAGCCGGCCGGAG
194 GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCATTGAGCCGGCCGGAG
*
25206906 AGGCATAATGCTCAAG
259 AGGCATAATGCGCAAG
25206922 TCGGGGATCG
Statistics
Matches: 934, Mismatches: 176, Indels: 63
0.80 0.15 0.05
Matches are distributed among these distances:
850 1 0.00
851 197 0.21
852 38 0.04
853 4 0.00
863 2 0.00
864 1 0.00
867 1 0.00
869 1 0.00
870 162 0.17
871 109 0.12
872 9 0.01
873 1 0.00
874 2 0.00
875 3 0.00
876 1 0.00
878 1 0.00
879 44 0.05
880 200 0.21
881 41 0.04
882 116 0.12
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (849 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGC
CAGTCCCCCCTGCGTGCTGTCGATCTTGCTGCCACAACCCTCGTTCGATCTGATCTTAGACTGGG
AATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCATTGAGCCGGCCGGAGAG
GCATAATGCGCAAGCCAAGGATTGGCCCGATCCTCGCTGCCACAACCCTCAGTCCGACTGGGGCT
TAGACATGGAATGAACTCCCTATGACTAAACCAACCCACAAAACGGACGTGCAAGCACTCAACCG
ACTGAAGAGGCAGAAAGTGCAAGCCGGGGATCAGCCTGGTCCCCCCCTACATGCTACCGATCCTG
TGACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGG
ATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATACGGACGCTCAGCCGACCAAAAAGG
TCGACTGAAAAGGCATAATACGCAAGCCAGGGATCAACTCGGTCCCTCTCTGTGTGCTACCGATC
CTGCTGCCACAACCCTCGGTCCAGCTAAGGCTTAGACATCAAATGAACTCCATATGCCTAAGCGA
ACCCACGAAACGAGCGGCCAAGTGAGAGGCCGGCCGGAGAGACAAAATACGCAAGCCGGGGATCG
ACCCGGTCCCTCCTACGTGCTGTCGATCCTGCTGCTGGTCCTGCTACCGCAACCCTCGATCCCGA
TCCG
Found at i:25207018 original size:26 final size:26
Alignment explanation
Indices: 25206982--25207034 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25206972 CTGACCTGAT
25206982 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25207008 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25207034 C
1 C
25207035 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25207301 original size:171 final size:171
Alignment explanation
Indices: 25207007--25207321 Score: 375
Period size: 171 Copynumber: 1.8 Consensus size: 171
25206997 AACTCCGTAT
* *
25207007 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACAAGCGTGCGGGAGCTCAG
1 GCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCAAGAAACAAGCGTGCGGGAGCTCAG
* * * * * * **
25207072 CCAGCTGAAGAGGCATAATGCGTAAGTCGGGGATCAGTTCGATCCCCCTCTACGTGCTGTCGATC
66 CCAGCTAAAGAGGAAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATC
25207137 CCGCTGCCGGTCCTGCTGCCACAACACTCGGTCCAGCTGGG
131 CCGCTGCCGGTCCTGCTGCCACAACACTCGGTCCAGCTGGG
* * ** * *
25207178 GCTTAGACAT-GGAATGAACTCCGCATGCCTAAGTTAACCCATGAAATGAGCGTGCGTGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGCATGCCTAAGTCAACCCAAGAAACAAGCGTGCGGGAGCTCA
* * * *
25207242 GTCAG-TCAAAGAGGAAAAATGCGCAAGCCATGGATCGGCCCGAT-CCCCTCCTGCGTGCTGTCG
65 GCCAGCT-AAAGAGGAAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCCT-CTACGTGCTGTCG
** *
25207305 ATCTTGCTGCTGGTCCT
128 ATCCCGCTGCCGGTCCT
25207322 ACTACCGCAA
Statistics
Matches: 118, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
170 6 0.05
171 111 0.94
172 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCAAGAAACAAGCGTGCGGGAGCTCAG
CCAGCTAAAGAGGAAAAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATC
CCGCTGCCGGTCCTGCTGCCACAACACTCGGTCCAGCTGGG
Found at i:25207498 original size:702 final size:705
Alignment explanation
Indices: 25206266--25207610 Score: 1683
Period size: 702 Copynumber: 1.9 Consensus size: 705
25206256 GGTCCGATTC
* * *
25206266 GATCTTAGACTGGGAATGAATTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * *
25206331 CCCATGAAACGAGCGTGCGGACGCTCAGTCGGCCAGAGAGGTCGGTTGAAAAGGCATAATGTGCA
66 CCCAAGAAACAAGCGTGCGGACGCTCA---GGCC--A-AGGTC-G-TGAAAAGGCATAATGCGCA
* * *
25206396 AGCTAGGGATCAACTCGGTCCCCCTCTACGTGCTGTCGATCCCACTATCGGTCCTGTTGCCACAA
123 AGCTAGGGATCAACTCGATCCCCCTCTACGTGCTGTCGATCCCACTACCGGTCCTGCTGCCACAA
* * **
25206461 CCCTTGGTCCAGCTAAGGCTTAGACATGGAATGAACTCCGTTTGCCTAAGCTAACCCACGAAACG
188 CACTCGGTCCAGCTAAGGCTTAGACATGGAATGAACTCCGCATGCCTAAGCTAACCCACGAAACG
* * * ** * * * *
25206526 AGCGTCCGGGTGAGAGGCCGGTCGGAGAGGCAAAATACGTAAGCCTGGGATCGACCCGGTCCCTT
253 AGCGTCCGGGCGACAGGCCAGTCAAAGAGGAAAAATACGCAAGCCTGGGATCGACCCGATCCCTC
* * * ** * *
25206591 TACGTGCTGTTGATCCTGCTGCTGGTCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACT
318 TACGTGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCGATCCGACCCGATCTTAGAAT
* *
25206656 AGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAAATG
383 AGGAATGAACTCCGTATGCTTAGACATAGAATGAACTCCGTATACCTAAGCCAACCCACGAAACG
* * * **
25206721 AGCGTGCGGGCACTCAGCCGATCGAAGAGGTAGAATGCGCAAGCCAGGGATCGGTCCAGTCCCCC
448 AGCGTGCGGGCACTCAACCGATCGAAGAGGCAGAATGCGCAAGCCAGGGACCGACCCAGTCCCCC
* * * * *
25206786 CTGTGTGCTGT-GG-ATCTTGCTACCACAACCCTCAGTTCGA-TCTGATCTTAGACTGGGAATGA
513 CTGCGTGCTGTCGGTA-C-CGCTACCACAACCCTC-GATCCAGTCCGATCTTAGACTGGGAATGA
* * *
25206848 ACTCTGTATGCCTAAGTCAACCCACGGA-ACGAGCGTTCGGGCGTTAAGCCGGCCGGAGAGGCAT
575 ACTCCGTATGCCTAAGTCAACCCAC-GATACGAGCGTACGAGCGTTAAGCCGGCCGGAGAGGCAT
25206912 AATGCTCAAGTCGGGGATCGAGCTCTACGTGCTGTCGGTCCTGCTACCGTAACGCCCGATCTGAC
639 AATGCTCAAGTCGGGGATCGAGCTCTACGTGCTGTCGGTCCTGCTACCGTAACGCCCGATCTGAC
25206977 CT
704 CT
25206979 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * *
25207044 CCCAAGAAACAAGCGTGCGGGA-GCTCA-GCC-A-G-C-TGAAGAGGCATAATGCGTAAG-TCGG
66 CCCAAGAAACAAGCGTGC-GGACGCTCAGGCCAAGGTCGTGAAAAGGCATAATGCGCAAGCT-AG
** * *
25207102 GGATCAGTTCGATCCCCCTCTACGTGCTGTCGATCCCGCTGCCGGTCCTGCTGCCACAACACTCG
129 GGATCAACTCGATCCCCCTCTACGTGCTGTCGATCCCACTACCGGTCCTGCTGCCACAACACTCG
** * * * *
25207167 GTCCAGCTGGGGCTTAGACATGGAATGAACTCCGCATGCCTAAGTTAACCCATGAAATGAGCGTG
194 GTCCAGCTAAGGCTTAGACATGGAATGAACTCCGCATGCCTAAGCTAACCCACGAAACGAGCGTC
* * * * * *
25207232 CGTGCGCTCA-GTCAGTCAAAGAGGAAAAATGCGCAAGCCAT-GGATCGGCCCGATCCCCTCCTG
259 CGGGCG-ACAGGCCAGTCAAAGAGGAAAAATACGCAAGCC-TGGGATCGACCCGAT-CCCT-CTA
* * * *
25207295 CGTGCTGTCGATCTTGCTGCTGGTCCTACTACCGCAACCCTTGGTCCGACCCGATCTTAGAATGG
320 CGTGCTGTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCGATCCGACCCGATCTTAGAATAG
* * * *
25207360 GATTGAACTCTGTATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG
385 GAATGAACTCCGTATGCTTAGACATAGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAG
* * * * * *
25207425 CGTGTGGGTACTCAACCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCC-GATCCCTCT
450 CGTGCGGGCACTCAACCGATCGAAGAGGCAGAATGCGCAAGCCAGGGACCGACCCAG-TCCCCCC
*
25207489 TGCGTGCTGTCGGTACCGTTACCACAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTC
514 TGCGTGCTGTCGGTACCGCTACCACAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTC
* * * *
25207554 CGTATGCCTAAGTCAACCCACGATACGAGTGTACTAGCGTTGAGCCGGCCGGTGAGG
579 CGTATGCCTAAGTCAACCCACGATACGAGCGTACGAGCGTTAAGCCGGCCGGAGAGG
25207611 TGTAATGCAT
Statistics
Matches: 539, Mismatches: 82, Indels: 33
0.82 0.13 0.05
Matches are distributed among these distances:
699 1 0.00
700 169 0.31
701 13 0.02
702 260 0.48
703 4 0.01
704 2 0.00
705 1 0.00
709 3 0.01
713 83 0.15
714 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (705 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
CCCAAGAAACAAGCGTGCGGACGCTCAGGCCAAGGTCGTGAAAAGGCATAATGCGCAAGCTAGGG
ATCAACTCGATCCCCCTCTACGTGCTGTCGATCCCACTACCGGTCCTGCTGCCACAACACTCGGT
CCAGCTAAGGCTTAGACATGGAATGAACTCCGCATGCCTAAGCTAACCCACGAAACGAGCGTCCG
GGCGACAGGCCAGTCAAAGAGGAAAAATACGCAAGCCTGGGATCGACCCGATCCCTCTACGTGCT
GTCGATCCTGCTGCTGGTCCTACTACCGCAACCCTCGATCCGACCCGATCTTAGAATAGGAATGA
ACTCCGTATGCTTAGACATAGAATGAACTCCGTATACCTAAGCCAACCCACGAAACGAGCGTGCG
GGCACTCAACCGATCGAAGAGGCAGAATGCGCAAGCCAGGGACCGACCCAGTCCCCCCTGCGTGC
TGTCGGTACCGCTACCACAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
CTAAGTCAACCCACGATACGAGCGTACGAGCGTTAAGCCGGCCGGAGAGGCATAATGCTCAAGTC
GGGGATCGAGCTCTACGTGCTGTCGGTCCTGCTACCGTAACGCCCGATCTGACCT
Found at i:25207790 original size:159 final size:157
Alignment explanation
Indices: 25207375--25207813 Score: 387
Period size: 159 Copynumber: 2.8 Consensus size: 157
25207365 AACTCTGTAT
* * *
25207375 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-CGTGCGGGTACTCAA
* * * *
25207440 CCGGTCGGAGAGGCAGAATGCGCAAGCCA-G-GGA-CCGACCCGATCCCTCTTGCGTGCTGTCGG
65 CCGGTCGGAGAGGTAGAATGTGCAA--AATGAGGATCAG-CCCGATCCCTCTTGCGTGCTGTCGG
** *
25207502 TACCGTTACCACAACCCTCGATCCAGTCCGA
127 TACCACTACCACAACCCTCGATCCACTCCGA
* * * *
25207533 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGATACGA-GTGTACTAGCGT--
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACGTG--C--GGGTAC
* * * * * *
25207594 TGAGCCGGCCGGTGAGGT-GTAA--TGCATAAATCAAGGATCAGCCCGATCCCCCTCTGCGTGCT
61 TCAACCGGTCGGAGAGGTAG-AATGTGCA-AAAT-GAGGATCAGCCCGATCCCTCT-TGCGTGCT
* * * * * *
25207656 GTCGGTCCCACTGCCACAACCCTCGGTCTGACT-GGG
122 GTCGGTACCACTACCACAACCCTCGATC-CACTCCGA
*
25207692 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGTACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GACGTGCGGGTACTCAA
* * * *
25207757 CCGATCGGAGAGGTAGAATGTGCAATATGAGGATCGGCCCGGTCCCTCTTGCGTGCT
65 CCGGTCGGAGAGGTAGAATGTGCAAAATGAGGATCAGCCCGATCCCTCTTGCGTGCT
25207814 ACTGATCGTG
Statistics
Matches: 219, Mismatches: 41, Indels: 42
0.73 0.14 0.14
Matches are distributed among these distances:
155 1 0.00
156 6 0.03
157 6 0.03
158 79 0.36
159 108 0.49
160 12 0.05
161 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACGTGCGGGTACTCAAC
CGGTCGGAGAGGTAGAATGTGCAAAATGAGGATCAGCCCGATCCCTCTTGCGTGCTGTCGGTACC
ACTACCACAACCCTCGATCCACTCCGA
Found at i:25207887 original size:26 final size:26
Alignment explanation
Indices: 25207851--25207903 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25207841 CTGATCCGAT
25207851 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
* *
25207877 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
25207903 C
1 C
25207904 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:25208406 original size:158 final size:157
Alignment explanation
Indices: 25208155--25208439 Score: 337
Period size: 158 Copynumber: 1.8 Consensus size: 157
25208145 CTCAACTGGC
* * * *
25208155 CGAAGAGGCAGAATGCACAAGTCGGGGATCAGCCTGATCCCCCTTGCGTGCTACCGATCCTGCTG
1 CGAAGAGGCAGAATGCACAAGTCAGGGATCAGCCTGATCACCCTTACGTGCTACCGATCCCGCTG
* * *
25208220 CCACAACCCTCGATCCGGTCCGATCTTAGAC-TGGGAATGAACT-CCGTATGCATAAGTCAACCC
66 CCACAACCCTCGATCCGGTCCGAGCTTAGACAT-GGAATCAACTGCC-TATGCATAAGCCAACCC
25208283 ACGGAACGAGCGTGCGGCGCTGAGCGGGT
129 ACGGAACGAGCGTGCGGCGCTGAGCGGGT
* * * *
25208312 CGAAGAGGCATAATGCACAAG-CTAGGGATCGGCCTGATCACCCTCTACGTGCTATCGGTCCCGC
1 CGAAGAGGCAGAATGCACAAGTC-AGGGATCAGCCTGATCACCCT-TACGTGCTACCGATCCCGC
* * * * *
25208376 TGCCATAACCCTC-AGTCTGG-CTGGGGCTTAGACATGGAATCAACTGCCTATGCCTAAGCCAAC
64 TGCCACAACCCTCGA-TCCGGTC-CGAGCTTAGACATGGAATCAACTGCCTATGCATAAGCCAAC
25208439 C
127 C
25208440 GACGAAAATG
Statistics
Matches: 106, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
156 1 0.01
157 40 0.38
158 62 0.58
159 3 0.03
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CGAAGAGGCAGAATGCACAAGTCAGGGATCAGCCTGATCACCCTTACGTGCTACCGATCCCGCTG
CCACAACCCTCGATCCGGTCCGAGCTTAGACATGGAATCAACTGCCTATGCATAAGCCAACCCAC
GGAACGAGCGTGCGGCGCTGAGCGGGT
Found at i:25208589 original size:26 final size:25
Alignment explanation
Indices: 25208560--25208638 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 25
25208550 CTGATCCGAT
25208560 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
*
25208586 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACT-GGGATGAACTCCGTATG
*
25208612 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
25208638 C
1 C
25208639 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 45 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:25208944 original size:381 final size:367
Alignment explanation
Indices: 25208244--25208970 Score: 877
Period size: 381 Copynumber: 1.9 Consensus size: 367
25208234 CCGGTCCGAT
* * * *
25208244 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGGAACGAGCGTGCGGCGCTGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGCGCTCAGCA
* * * *
25208309 GGTCGAAGAGGCATAATGCACAAGCTAGGGATCGGCCTGATCACCCTCTACGTGCTATCGGTCCC
66 GGTCGAAGAGGCATAATGCACAAGCCAGGGATCAGCCCGATCACCCTCTACGTGCTATCGCTCCC
* * * *
25208374 GCTGCCATAACCCTCAGTCTGGCTGGGGCTTAGACATGGAATCAACTGCCTATGCCTAAGCCAAC
131 ACTGCCACAAACCTCAGTCTGGATGGGGCTTAGACATGGAATCAACTGCCTATGCCTAAGCCAAC
* * * *
25208439 CGACGAAAATGGGCGTGCGGGCACTCAGCCAACCAGAGAGACAGAATGTGAAGCCGGGGATTGGC
196 CCACGAAAA-GAGCGTGCGGGCACTCAGCCAACCAGAGAGACAGAATGTGAAGCCGGGGATCGAC
** * *
25208504 CCGGTCCCCCCTACGTGCTACCGATCCTACTACCGTAACCCTCGATCTGATCCGATCTTAGACTG
260 CCAATCCCCCCTACGTGCTACCGATCCTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTG
25208569 GGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATG
325 GGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATG
* * *
25208612 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTAC-GGCGCTCAGC
* * * * *
25208677 AGGTCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCGCCCTTTACGTGCTGCCGATCT
65 AGGTCGAAGAGGCATAATGCACAAGCCAGGGATCAGCCCGATCACCCTCTACGTGCT----A--T
*
25208742 CGCTGCCGGTCTTACTGCCACAAACCTC-GATAC-GGATGGGGCTTAGACATGGAATGAACT-CC
124 CGCT-CC---C--ACTGCCACAAACCTCAG-T-CTGGATGGGGCTTAGACATGGAATCAACTGCC
* ** ** *
25208804 GTATGCCTAAGCCAACCCACGAAACA-AGCGTGTGGGTGCTCAGCCGGCCAGAGAGGCAGAATGT
181 -TATGCCTAAGCCAACCCACGAAA-AGAGCGTGCGGGCACTCAGCCAACCAGAGAGACAGAATGT
** * *
25208868 GCAAGCCGGGGATCGACCCAATCCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCC
244 G-AAGCCGGGGATCGACCCAATCCCCCCTACGTGCTACCGATCCTACTACCGCAACCCTCGATCC
* * *
25208933 GGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTA
308 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
25208971 AGTCAACCCA
Statistics
Matches: 299, Mismatches: 42, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
368 49 0.16
369 57 0.19
373 1 0.00
375 4 0.01
376 2 0.01
379 1 0.00
380 35 0.12
381 148 0.49
382 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (367 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGCGCTCAGCA
GGTCGAAGAGGCATAATGCACAAGCCAGGGATCAGCCCGATCACCCTCTACGTGCTATCGCTCCC
ACTGCCACAAACCTCAGTCTGGATGGGGCTTAGACATGGAATCAACTGCCTATGCCTAAGCCAAC
CCACGAAAAGAGCGTGCGGGCACTCAGCCAACCAGAGAGACAGAATGTGAAGCCGGGGATCGACC
CAATCCCCCCTACGTGCTACCGATCCTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATG
Found at i:25209284 original size:158 final size:156
Alignment explanation
Indices: 25208783--25209284 Score: 490
Period size: 158 Copynumber: 3.2 Consensus size: 156
25208773 ACGGATGGGG
* *
25208783 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GGCGTGTGGGCGCTCAGC
* *
25208848 CGGCCAGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCAATCCCCCCTACGTGCTGTCGATCCT
65 CGGCCAGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCAATCCCCCTTGCGTGCTGTCGATCCT
* *
25208913 ACTGCCGCAACCCTCGGTCCGGTCTGAT
130 GCTGCCGCAACCCTC-GTTCGGTCTGAT
* * * * * *
25208941 CTTAGA-TTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGT-TCAGGCGTTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GCGTGT-GGGCGCTCA
* * * * * *
25209004 GCCAGCCAGAGCGGCATAATGTGCAAGCCGGGGATCGACCTAATCCCCCTCTGCGTGCTGCCGGT
63 GCCGGCCAGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCAATCCCCCT-TGCGTGCTGTCGAT
* * * * * * **
25209069 CCCGCTGCCACAACCCTAGGTCCGACTGGGG
127 CCTGCTGCCGCAACCCTCGTTCGGTCT-GAT
* *
25209100 CTTAGACATGGAACGAACTCCCTATGCCTAAGCCAACCCACGAAACGGTCGTGTGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGG-CGTGTGGGCGCTCAGC
* * ** *** * ** * *
25209165 CGGTC-GAAAAGGCAGAATGCACAAGTTAGGGATCGGCCCGGTCCCTCTTGCGTGCTGTCGATCT
65 CGGCCAG-AGAGGCAGAATGTGCAAGCCGGGGATCGACCCAATCCCCCTTGCGTGCTGTCGATCC
***
25209229 TGCTTTTGCAACCCTCGATTCGGTCTGAT
129 TGCTGCCGCAACCCTCG-TTCGGTCTGAT
25209258 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
25209285 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 65, Indels: 22
0.75 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 150 0.56
159 113 0.42
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGCGTGTGGGCGCTCAGCC
GGCCAGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCAATCCCCCTTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCGTTCGGTCTGAT
Found at i:25209294 original size:26 final size:26
Alignment explanation
Indices: 25209258--25209310 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25209248 TCGGTCTGAT
25209258 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25209284 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25209310 C
1 C
25209311 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25210284 original size:158 final size:157
Alignment explanation
Indices: 25209952--25210451 Score: 544
Period size: 158 Copynumber: 3.2 Consensus size: 157
25209942 CCCTCAAAAT
*
25209952 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
* * * *
25210017 CGG-CTGGAGAGGCAGAATGCGAAAGTCGGGTATTGGCCTGG-CCCCCCTGCGTGCTGTCGATCC
65 CGGTC-AGAGAGGCAGAATGCGCAAGTCGGGGATTGGCCTGGTCCCCCCTGCGTGCTGCCGATCC
* * * * *
25210080 TGCTGCCGCAACCCTCGGTCCGGTCTGAT
129 CGCTACCACAACCCTCGGTCCGGACTGAG
* * * * *
25210109 CTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGG-CCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
* * * * *
25210173 CGGTCAGAGAGGCATAAAGCGCAAGTCGGGGATCGGCCTGGTCCCCCTCTGTGTGCTGCCGGTCC
65 CGGTCAGAGAGGCAGAATGCGCAAGTCGGGGATTGGCCTGGTCCCCC-CTGCGTGCTGCCGATCC
* *
25210238 CGCTACCACAACCGTCGGTCC-GACTGGGG
129 CGCTACCACAACCCTCGGTCCGGACT-GAG
* *
25210267 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCG-G
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCT-GAG
* * *
25210331 CCGGTCAGAGAGGCAGAATGCGCAAG-CTGGGGATTGGCCCGGTCCCTCCTGCGTGCTGTCGATC
64 CCGGTCAGAGAGGCAGAATGCGCAAGTC-GGGGATTGGCCTGGTCCCCCCTGCGTGCTGCCGATC
** * ** * * * * *
25210395 CTACTGCTGCAACCTTCAGTCTGGTCTGAT
128 CCGCTACCACAACCCTCGGTCCGGACTGAG
25210425 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
25210452 TTAGACTGGG
Statistics
Matches: 283, Mismatches: 49, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
156 39 0.14
157 61 0.22
158 134 0.47
159 48 0.17
160 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTGAGCC
GGTCAGAGAGGCAGAATGCGCAAGTCGGGGATTGGCCTGGTCCCCCCTGCGTGCTGCCGATCCCG
CTACCACAACCCTCGGTCCGGACTGAG
Found at i:25210466 original size:26 final size:26
Alignment explanation
Indices: 25210425--25210477 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25210415 CTGGTCTGAT
25210425 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
25210451 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25210477 C
1 C
25210478 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25211046 original size:159 final size:157
Alignment explanation
Indices: 25210590--25211084 Score: 482
Period size: 158 Copynumber: 3.1 Consensus size: 157
25210580 CCACTGTCCG
* * * * **
25210590 TCCTTCTGCCACAACCCTC-GATCAGACTGGGCCTTAGACATGGAATGAACTTCGTACACCTAAG
1 TCCTGCTGCCACAACCCTCGGTTC-GACTGGGCCTTAGACATGGAATGAACTCCATATGCCTAAG
* * * * *
25210654 CCAACCCATAAA-ATGAGGGTACGGGCGCTCAGTCGACCGGAGAGGCAAAATGCACAAGCCGGGG
65 CCAACCCATAAACA-GAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCGGGG
* * * * *
25210718 ACCGACCCGATCCCCCCTACGTGTTGTCGA
129 ATC-ACTCGGTCCCCCTTACGTGCTGTCGA
* * * * ** *
25210748 TCCTGCTGCCGCAACCCTCGATCTGGTCT-GATCTTAGAC-TGGTAATGAACTCTATATGCCTAA
1 TCCTGCTGCCACAACCCTCGGT-TCGACTGGGCCTTAGACATGG-AATGAACTCCATATGCCTAA
* * * *
25210811 GTCAACCCATGAAAC-GATCGTGCAGGCGCTGAGCC-AGTCGGAGAGGCAGAATGCACAAGCCGG
64 GCCAACCCAT-AAACAGAGCGTGCGGGCGCTCAGCCGA-TCGGAGAGGCAGAATGCACAAGCCGG
** * * *
25210874 GGATCGGTCCGGTCCCTCTTTGCGTGCTGTCGG
127 GGATCACT-CGGTCCC-CCTTACGTGCTGTCGA
** * * * *
25210907 TCCCACTGCCACAACCCTCGGTTCGACTGGGGCTTAGGCATGGACTGAACTCCCTATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGGTTCGACTGGGCCTTAGACATGGAATGAACTCCATATGCCTAAGC
*
25210972 CAACCCACTAAACAG-GCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGA
66 CAACCCA-TAAACAGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCGGGGA
25211036 TCAACTCGGTCCCCCTTACGTGCTGTCGA
130 TC-ACTCGGTCCCCCTTACGTGCTGTCGA
*
25211065 TCCTGCTGCCGCAACCCTCG
1 TCCTGCTGCCACAACCCTCG
25211085 ATCTGGTCTG
Statistics
Matches: 266, Mismatches: 57, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
157 4 0.02
158 131 0.49
159 123 0.46
160 8 0.03
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (157 bp):
TCCTGCTGCCACAACCCTCGGTTCGACTGGGCCTTAGACATGGAATGAACTCCATATGCCTAAGC
CAACCCATAAACAGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCGGGGAT
CACTCGGTCCCCCTTACGTGCTGTCGA
Found at i:25211126 original size:26 final size:26
Alignment explanation
Indices: 25211097--25211149 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25211087 CTGGTCTGAT
* *
25211097 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25211123 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25211149 C
1 C
25211150 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25212176 original size:26 final size:26
Alignment explanation
Indices: 25212147--25212198 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25212137 CTGGTTTGAT
* *
25212147 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
25212173 CTTAGACTAGGTATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25212199 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25212478 original size:197 final size:196
Alignment explanation
Indices: 25212143--25212502 Score: 476
Period size: 197 Copynumber: 1.8 Consensus size: 196
25212133 CTGTCTGGTT
* *
25212143 TGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGTATGAACTCCGTATGGCTAAGTCA
1 TGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGGCTAAGCCA
* * * ***
25212208 ACCCGCGATACGAGCATGCGGGAGCTCAGCCGAATGGAAAGGTAAAATACGCAAGTCGGGGATCG
66 ACCCACGAAACGAGCATGCGGGAGCTCAACCGAACCAAAAGGTAAAATACGCAAGTCGGGGATCG
*
25212273 GCCCGGTCCCCCCCTGCGTGCTATCGATCCTGCTGTTGGTCTTGTTGCTGCCAGCCTCGGTCCGA
131 GCCCGGT-CCCCCCTACGTGCTATCGATCCTGCTGTTGGTCTTGTTGCTGCCAGCCTCGGTCCGA
25212338 TC
195 TC
* *
25212340 TGATCTTAGTCTGGGAATGAACTCTGTATGCTTAGAC-ATGGAATGAACTCTGTATGTG-TAAGC
1 TGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTA-GGAATGAACTCCGTATG-GCTAAGC
** * * * *
25212403 CAACCCACGAAACGAGTGTGCGGGTGCTCAACCG-GCCAAAGAGGTAGAATGCGCAAG-CTGGGG
64 CAACCCACGAAACGAGCATGCGGGAGCTCAACCGAACCAAA-AGGTAAAATACGCAAGTC-GGGG
* *
25212466 ATCGGCCCGGTCCCCCTTACGTGCTGTCGATCCTGCT
127 ATCGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCT
25212503 ACCGCAACCC
Statistics
Matches: 140, Mismatches: 19, Indels: 9
0.83 0.11 0.05
Matches are distributed among these distances:
196 27 0.19
197 112 0.80
198 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (196 bp):
TGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGGCTAAGCCA
ACCCACGAAACGAGCATGCGGGAGCTCAACCGAACCAAAAGGTAAAATACGCAAGTCGGGGATCG
GCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGTTGGTCTTGTTGCTGCCAGCCTCGGTCCGAT
C
Found at i:25212638 original size:158 final size:159
Alignment explanation
Indices: 25212369--25212733 Score: 423
Period size: 158 Copynumber: 2.3 Consensus size: 159
25212359 AACTCTGTAT
* ** * *
25212369 GCTTAGACATGGAATGAACTCTGTATGTGTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * *
25212434 CCGGCCAAAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCT-TACGTGCTGTCGATC
66 CCGACCAAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATC
* * *
25212498 CTGCTACCGCAACCCTCAG-TCTGATCTGA
131 CCGCTACCACAACCCTCAGTTCTGAT-GGA
* * * * * * *
25212527 TCTTAGGC-TGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * **
25212591 GCCGACCCAAGAGGCATAATGCGCAAG-TCGGGGATCGACCCGGTCCCCCTCTGTGTGCTGTCGA
65 ACCGACCAAAGAGGCAGAATGCGCAAGCT-GGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGA
* * * *
25212655 TCCCGCTGCCACAACCCTTAGTTCTGGTGGG
129 TCCCGCTACCACAACCCTCAGTTCTGATGGA
*
25212686 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
25212734 GCATACGGTC
Statistics
Matches: 169, Mismatches: 33, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 92 0.54
159 69 0.41
160 6 0.04
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGACCAAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATC
CCGCTACCACAACCCTCAGTTCTGATGGA
Found at i:25214898 original size:26 final size:26
Alignment explanation
Indices: 25214868--25214920 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25214858 GTTCACTTAG
25214868 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
25214894 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
25214920 G
1 G
25214921 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:25215750 original size:26 final size:26
Alignment explanation
Indices: 25215720--25215772 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25215710 GTTGACTTAG
25215720 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACGGAA-TTCATCCCCAGTCTAA
*
25215746 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
25215772 G
1 G
25215773 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:25216271 original size:158 final size:160
Alignment explanation
Indices: 25215847--25216273 Score: 453
Period size: 160 Copynumber: 2.7 Consensus size: 160
25215837 CTAACTTGTG
* *
25215847 CATTCTGCCT-TTTCGGTCGGCTGAGCGCCCACACGATCGTTTCATGGGTTGGCTTAGGCATAGG
1 CATTCTGCCTCTTT-GGTCGGCTGAGC-CCCACACGCTCGTTTCATGGGTTGGCTTAGGCATATG
* * * *
25215911 GAGTTCGTTCCATGTCTAAGCCCCAGT-CGGACCTAGGGTTGTGG-TAGCGGGACCGGCAGCACG
64 GAGTTCATTCCATGTCTAAGCCCCAGTCCGGA-CGAGGGTTGTGGCTAGCAGGACCGACAGCACG
*
25215974 TAGAGGGGGATTAGGTCGATCCCCGGGCTTGCA
128 TAGAGGGGGATTAGGCCGATCCCCGGGCTTGCA
* * * * ** *
25216007 CATTATGCCGCTCTGG-CTGGCTCAATGCCTGA-ACGCTCGTTTCATGGGTTGGCTTAAGCATAT
1 CATTCTGCCTCTTTGGTC-GGCT-GA-GCCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATAT
* ** * * ** *
25216070 GGAGTTCATTCCCA-ATCTAAG-ATCAGACCGGACTGAGGGTTGTGGCT-GTAGGATTGATAGCA
63 GGAGTTCATT-CCATGTCTAAGCCCCAGTCCGGAC-GAGGGTTGTGGCTAGCAGGACCGACAGCA
*
25216132 CGTAGA-GGGGATTGGGCCGATCCCC-GGCTTGCA
126 CGTAGAGGGGGATTAGGCCGATCCCCGGGCTTGCA
*
25216165 CATTCTGCCTCTTTGGTCGGCTGAGCACCCACACGCTTGTTTCATGGGTTGGCTTAGGCATATGG
1 CATTCTGCCTCTTTGGTCGGCTGAGC-CCCACACGCTCGTTTCATGGGTTGGCTTAGGCATATGG
* *
25216230 AGTTCATTCCATGTCTAAGCCCCA-TCCGTATCGAGGTTTGTGGC
65 AGTTCATTCCATGTCTAAGCCCCAGTCCGGA-CGAGGGTTGTGGC
25216274 AGTAAGACCG
Statistics
Matches: 216, Mismatches: 37, Indels: 30
0.76 0.13 0.11
Matches are distributed among these distances:
156 2 0.01
157 6 0.03
158 85 0.39
159 26 0.12
160 86 0.40
161 9 0.04
162 2 0.01
ACGTcount: A:0.18, C:0.25, G:0.30, T:0.27
Consensus pattern (160 bp):
CATTCTGCCTCTTTGGTCGGCTGAGCCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATATGGA
GTTCATTCCATGTCTAAGCCCCAGTCCGGACGAGGGTTGTGGCTAGCAGGACCGACAGCACGTAG
AGGGGGATTAGGCCGATCCCCGGGCTTGCA
Found at i:25216422 original size:26 final size:26
Alignment explanation
Indices: 25216393--25216471 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
25216383 GTTGACTTAG
*
25216393 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
25216419 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
25216445 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
25216471 G
1 G
25216472 ATCGAATCAG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:25216923 original size:158 final size:158
Alignment explanation
Indices: 25216445--25216925 Score: 454
Period size: 159 Copynumber: 3.0 Consensus size: 158
25216435 CCTAGTCTAA
* * * * ** *
25216445 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCAGATCGAGGGTTGCGATAGTAGGATCGGT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGCAGCAGGATCGGT
* * ** ** *
25216509 AGCACGTAGGAGGGACCGGGCCAATCCCCAGCTT-CACATTCTATCTC-TCTGGTTGGATGAGTG
65 AGCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTTC-GGTCGGATGAGTG
* *
25216572 CCCGCACGCCCATTTCGTCGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTAGGTTGGCTTAG
* * * * *
25216602 GCATA-GGCAGTTGATT-CCATGTCTAAGCTCTAG-CCAGACTGAGGGTTGTGGCAGC-GAGACC
1 GCATACAG-AGTTCATTCCCA-GTCTAAGATC-AGACCAGACCGAGGGTTGTGGCAGCAG-GATC
* * * * * * * * * *
25216663 GGCAGCACGTAGAGGGTGATCAGGCCGATCCCTAGCTTGTGCATTATGCCTCTTCGATCAGCTCA
62 GGTAGCACGTAG-GGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTTCGGTCGGATGA
* * *
25216728 GTGCCCGCACGCTCATTCCGTAGGTTGACTTAT
126 GTGCCCGCACGCTCATTTCGTAGGTTGGCTTAG
*
25216761 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGTA
* * * * *
25216826 GCACGCAGGGGGGACCGGGCTGATCCCCAACTTGTGCATTCTGCCTCTTCGGTCGGTTGAGCGCC
66 GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTTCGGTCGGATGAGTGCC
* * * *
25216891 CGTACGTTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCATTTCGTAGGTTGGCTTAG
25216919 GCATACA
1 GCATACA
25216926 ACGTTCTTTC
Statistics
Matches: 253, Mismatches: 59, Indels: 23
0.76 0.18 0.07
Matches are distributed among these distances:
156 6 0.02
157 50 0.20
158 94 0.37
159 96 0.38
160 7 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGTA
GCACGTAGGGGGGACCGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTTCGGTCGGATGAGTGCC
CGCACGCTCATTTCGTAGGTTGGCTTAG
Found at i:25217158 original size:26 final size:26
Alignment explanation
Indices: 25217128--25217180 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25217118 GTTGACTTAG
25217128 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
25217154 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
25217180 G
1 G
25217181 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Done.