Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 258 of 402
Found at i:25217466 original size:710 final size:709
Alignment explanation
Indices: 25216419--25217708 Score: 1685
Period size: 710 Copynumber: 1.8 Consensus size: 709
25216409 CCCAGTCTAA
* * * * *
25216419 GCATATGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGAT
1 GCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAATCAGAC
* * * * *
25216484 CGAGGGTTGCGATAGTAGGATCGGTAGCACGTAGGAGGGACCGGGCCAATCCCCAGCTTCACATT
66 CGAGGGTTGCGATAGCAGGATCAGTAGCACGCAGGAAGGACCGGGCCAATCCCCAGATTCACATT
* *** * *
25216549 CTATCTCTCTGGTTGGATGAGTGCCCGCACGCCCATTTCGTCGGTTGGCTTAGGCATAGGCAGTT
131 CTACCTCTCTGACCGGATGAGCGCCCGCACACCCATTTCGTCGGTTGGCTTAGGCATAGGCAGTT
* * * * *
25216614 GATTCCATGTCTAAGCTCTAGCCAGACTGAGGGTTGTGGCAGCGAGACCGGCAGCACGTAGAGGG
196 CATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCGAGACAGGCAGCACGCAGAGGG
* ** * * *
25216679 TGATCAGGCCGATCCCTAGCTTGTGCATTATGCCTCTTCGATCAGCTCAGTGCCCGCACGCTCAT
261 GGATCAGGCCGATCCCTAGCTTGTGCATTACACCTCTCCGACCAGCTCAGTGCCCGCACACTCAT
* *
25216744 TCCGTAGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
326 TCCGTAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTG
* * * *
25216809 TGGCAGCAGG-ATCGGTAGCACGCAGGGGGGACCG-GGCTGATCCCCAACTTGTGCATTCTGCCT
391 TGGCAGC-GGTATCGATAGCACGCAGGAGGGACCGAGTC-GATCCCCAACTTGCGCATTCTGCCT
* ** ** ** * *
25216872 CTTCGGTCGGTTGAGCGCCCGTACGTTCGTTTCGTGGGTTGGCTTAGGCATAC-AACGTTCTTTC
454 CTCCGACCGGTTGAGCAACCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAA-GTTCATTC
* * * *
25216936 CAT-TACTAAGCATATAGAGATCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGTGGCAG
518 CATGT-CTAAGCATACAGAGATCAATCCCAGTCTAAGATCAG-CTCGGACCAAGGGTTGCGGCAG
25216999 CAGCAGCAGCAATAGGATCGACAGTGCACCGAGGGGACAGGGTCGATCCCTGACTTGTGCATTCT
581 CAGCAGCAGCAATAGGATCGACAGTGCACCGAGGGGACAGGGTCGATCCCTGACTTGTGCATTCT
25217064 GCCTCTCCGACCAGCCTCTCCGGTCGACTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAG
646 GCCTCTCCGACCAGCCTCTCCGGTCGACTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAG
* *
25217128 GCATACGGAGTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGATCAGAC
1 GCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAATCAGAC
* * * * *
25217193 CGAGGGTTGCGGTAGCAGGATCAGTAGCACGCAGGAAGGATCGGGCCGATCCTCATATTGCACAT
66 CGAGGGTTGCGATAGCAGGATCAGTAGCACGCAGGAAGGACCGGGCCAATCCCCAGATT-CACAT
* * * * *
25217258 TCTACCTCT-TCGACCGGCTGAGCGCCCGCACATCCGTTTCGTGGGTTGGCTTAGGCATAGGGAG
130 TCTACCTCTCT-GACCGGATGAGCGCCCGCACACCCATTTCGTCGGTTGGCTTAGGCATAGGCAG
* * *
25217322 TTCATTCCATGTCTAAGCCCTAGTCAGACCGAGGGTTGTGGCAGTGGGACAGGCAGCACGCAGAG
194 TTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCGAGACAGGCAGCACGCAGAG
** * * * * * * *
25217387 GGGGATTGGGCTGAT-CCTTGATTTGTGCATTACACCTCTCCGGCCGGCTCAGTGCCCGTACATT
259 GGGGATCAGGCCGATCCCTAG-CTTGTGCATTACACCTCTCCGACCAGCTCAGTGCCCGCACACT
* * * *
25217451 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGG
323 CATTCCGTAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGG
* * * ***
25217516 TTGTGGTAGCGGTATCGATAGCACGCAGGAGGGATCGAGTCGGTCCCTGGCTTGCGCATTCTGCC
388 TTGTGGCAGCGGTATCGATAGCACGCAGGAGGGACCGAGTCGATCCCCAACTTGCGCATTCTGCC
* *
25217581 TCTCCGACCGGTTGAGCAACCACATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
453 TCTCCGACCGGTTGAGCAACCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTC
* * * *
25217646 TATGTCTAAGCATACAGAGTTCAATCCCATTCTAAGATCAGGTCGGACCAAGGGTTGCGGCAG
518 CATGTCTAAGCATACAGAGATCAATCCCAGTCTAAGATCAGCTCGGACCAAGGGTTGCGGCAG
25217709 TAAGACCAGC
Statistics
Matches: 487, Mismatches: 86, Indels: 15
0.83 0.15 0.03
Matches are distributed among these distances:
709 115 0.24
710 368 0.76
711 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (709 bp):
GCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAATCAGAC
CGAGGGTTGCGATAGCAGGATCAGTAGCACGCAGGAAGGACCGGGCCAATCCCCAGATTCACATT
CTACCTCTCTGACCGGATGAGCGCCCGCACACCCATTTCGTCGGTTGGCTTAGGCATAGGCAGTT
CATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCGAGACAGGCAGCACGCAGAGGG
GGATCAGGCCGATCCCTAGCTTGTGCATTACACCTCTCCGACCAGCTCAGTGCCCGCACACTCAT
TCCGTAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTG
TGGCAGCGGTATCGATAGCACGCAGGAGGGACCGAGTCGATCCCCAACTTGCGCATTCTGCCTCT
CCGACCGGTTGAGCAACCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCAT
GTCTAAGCATACAGAGATCAATCCCAGTCTAAGATCAGCTCGGACCAAGGGTTGCGGCAGCAGCA
GCAGCAATAGGATCGACAGTGCACCGAGGGGACAGGGTCGATCCCTGACTTGTGCATTCTGCCTC
TCCGACCAGCCTCTCCGGTCGACTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAG
Found at i:25217539 original size:159 final size:158
Alignment explanation
Indices: 25217154--25217645 Score: 389
Period size: 158 Copynumber: 3.1 Consensus size: 158
25217144 CCCAATCTAA
* * * *
25217154 GCATATGGAGTTCATTCCCAATCTAAGATCGGA-TCAGACCGAGGGTTGCGGTAGCAGGATC-AG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGTGGTAGC-GGATCGA-
** * *
25217217 TAGCACGCAG-GAAGGATCGGGCCGATCCTCATATTGCACATTCTACCTCTTCGACCGGCTGAGC
63 TAGCACGCAGAGGGGGATCGGGCCGATCCTCATATTGCACATTCTACCTCTCCGACCGGCTCAGC
* *
25217281 GCCCGCACATCCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACATCCATTTCGTGGGTTGACTTAG
* ** * * *
25217312 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGTC-AGACCGAGGGTTGTGGCAGTGGGA-CAG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACTAGACCGAGGGTTGTGGTAG-CGGATC-G
** * * * ** *
25217374 GCAGCACGCAGAGGGGGATTGGGCTGATCCTTGAT-TTGTGCATTAC-ACCTCTCCGGCCGGCTC
62 ATAGCACGCAGAGGGGGATCGGGCCGATCC-TCATATTGCACATT-CTACCTCTCCGACCGGCTC
* * *
25217437 AGTGCCCGTACATTCATTTCGTGGGTTGACTTAG
125 AGCGCCCGCACATCCATTTCGTGGGTTGACTTAG
* *
25217471 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGGTTGTGGTAGCGGTATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGTGGTAGCGG-ATCGATA
* * * * * * * * *
25217536 GCACGCAG-GAGGGATCGAGTCGGTCC-C-TGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGC
65 GCACGCAGAGGGGGATCGGGCCGATCCTCAT--ATTGCACATTCTACCTCTCCGACCGGCTCAGC
** * *
25217598 -AAC-CACATGCTCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACAT-C-CATTTCGTGGGTTGACTTAG
25217629 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
25217646 TATGTCTAAG
Statistics
Matches: 260, Mismatches: 55, Indels: 38
0.74 0.16 0.11
Matches are distributed among these distances:
155 1 0.00
156 4 0.02
157 6 0.02
158 126 0.48
159 115 0.44
160 8 0.03
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGTGGTAGCGGATCGATAG
CACGCAGAGGGGGATCGGGCCGATCCTCATATTGCACATTCTACCTCTCCGACCGGCTCAGCGCC
CGCACATCCATTTCGTGGGTTGACTTAG
Found at i:25218732 original size:26 final size:26
Alignment explanation
Indices: 25218702--25218754 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25218692 GTTAACTTAG
*
25218702 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
*
25218728 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
25218754 G
1 G
25218755 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:25219798 original size:870 final size:870
Alignment explanation
Indices: 25218150--25220107 Score: 1967
Period size: 870 Copynumber: 2.3 Consensus size: 870
25218140 ACGTTCGTTC
* *
25218150 CATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTGTG
1 CATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGAACCGAGGGTTGTG
* * *
25218215 GTAGCAAGATCCACAGCACACAGGGGGGACTGGACCGATCCCTGGATTGCGCATTCTACCTCTTC
66 GCAGCAAGATCCACAGCACACAGAGGGGACTGGACCGATCCCTGGATTACGCATTCTACCTCTTC
* * * * *
25218280 GACCGACTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGT
131 GACCGACTGAGCCCCCACACGCTCATTTCGTGCGTTGGCTAAGGCATACAGAGTTCATTCCATGT
** * * * * *
25218345 CTAAGCATACGGAGTTCATTCTTAGTCTAAGATTAGACCGGACCGAGGGTTGTGGTAGCAGGACC
196 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGATAGCAAGACC
* *** * * *
25218410 AGCAGCAGGATCAATAGCACGTAAGGGGACCGGGTCGATCCCAGGCTTACGCATTTTGCCTCTCT
261 AGCAGCAGGATCAACAGCACGTAAGGGGACCGAACCGAGCCCAGGCTTACGCATTCTGCCTCTCC
* *** * * *
25218475 GATCGACCTCTCACTCGGATGCTCGTTTCGTGGGTTGGCTTAGGCAAACGAAGTTCATTCCATGT
326 GACCGACCGAGCACTC-GACGCTCGTTTCATCGGTTGGCTTAGGCAAACGAAGTTCATTCCATGT
** * * **
25218540 CTAAGCCTTAGCCGGACCAAGGGTTGTGGCAACAGGACCGATAGTGGGATCGACAGCACGTAGAG
390 CTAAGCCCCAGCCGGAACAAGGGTTGT----A-AGGA-C-A-AGTAGGATCGACAGCACACAGAG
* * * *
25218605 GGGGACCGAGCTGATCCTCAGCTTGCACATTATGCCTCTTCAACTGACCTTTCTGGCCGACTGAA
447 AGGGACCGAGCTGATCCCCAGCTTGCACATTATGCCTCTCCAACTGACCTTTCTGACCGACTGAA
* * *
25218670 CGTCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACG
512 CGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCAAACAGAGTTCATCCCCAGTCTAAGCATACG
* * *
25218735 GAATTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAGGATCGGTAGCACGTA
577 GAATTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTACGGCAGCAGGATCGATAGCACGTA
* * * **
25218800 AGGGGGACCGAACGGATCCCCGACTTGCGCTTTCTGCCTCTCCAACTGGCTGAGCGCTTGCACGT
642 AGGGGGACC-AACGGATCCCCGACTTGCACATTCTGCCTCTCCAACTGGCTGAGCGCCTGCACAC
* * * * * *
25218865 CCGTTTCGTGGGTTGGCTTAGTCATAGGGAGTTTATTCCATGTCTAAGCCCCAGTCGGACCGAGG
706 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCAGACCGAGG
*
25218930 GTTGTGGCAGCGGGACCGACAGAACGCAGAGGGGGACTGGGTCGATCCTTGGCTTGCGCATTATG
771 GTTATGGCAGCGGGACCGACAGAACGCAGAGGGGGACTGGGTCGATCCTTGGCTTGCGCATTATG
25218995 CCTCTCTGATCGACTCAATGCCCGAACACTCATTT
836 CCTCTCTGATCGACTCAATGCCCGAACACTCATTT
* * * *
25219030 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATTGGACCGAGGGTTTTG
1 CATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGAACCGAGGGTTGTG
* * * * * *
25219095 GCAGCAGGATCGACAGCACGCA-ATGGGA-TCGGGCCGAT-CCTCGGCTTACGCATTCTACCTCT
66 GCAGCAAGATCCACAGCACACAGAGGGGACT-GGACCGATCCCT-GGATTACGCATTCTACCTCT
* * * *
25219157 TCGATCGGCTGAGCACCCCACACGCTCGTTTCGTGCTTTGGCTAAGGCATACAGAGTTCATTCCA
129 TCGACCGACTGAGC-CCCCACACGCTCATTTCGTGCGTTGGCTAAGGCATACAGAGTTCATTCCA
* *
25219222 TGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGGACCGAAGGTTGCGATAGCAA
193 TGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGGACCGAAGGTTGCGATAGCAA
* * * * * *
25219287 GACCAGCAGCAGGATCGACAGCGCGTAGGAGGGATCGAACCGAGCCCCGGCTTACGCATTCTGCG
257 GACCAGCAGCAGGATCAACAGCACGTAAG-GGGACCGAACCGAGCCCAGGCTTACGCATTCTGCC
* * * * *
25219352 TCTCCGACCGGCCGAGCACCTAC-CCGCT-GATTTCATCGGTTGGCTTAGGCATATGGAGTTCAT
321 TCTCCGACCGACCGAGCA-CT-CGACGCTCG-TTTCATCGGTTGGCTTAGGCAAACGAAGTTCAT
** ** * *
25219415 TTGATGTCTAAGCCCCAGTTGGAACGAGGGTTGT-A-G-C-AGTAGGATCGGCAGCACACAGAGA
383 TCCATGTCTAAGCCCCAGCCGGAACAAGGGTTGTAAGGACAAGTAGGATCGACAGCACACAGAGA
* * * * * *
25219476 GGGACCGGGCTGATCCCCGGCTTGCATATTATGCCTCTCCGA-TCGACCTTT-TCGATCGGCTGA
448 GGGACCGAGCTGATCCCCAGCTTGCACATTATGCCTCTCCAACT-GACCTTTCT-GACCGACTGA
** * * *
25219539 GTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCAAATAGAGTTCATCCCCAGTCTAAGCATAC
511 ACGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCAAACAGAGTTCATCCCCAGTCTAAGCATAC
* * * * *
25219604 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGATTGCGGCCGCAGGATCGATAGCATG-
576 GGAATTCATTCCCAGTCTAAGATCAGACCGGACCGAGGATTACGGCAGCAGGATCGATAGCACGT
* * * * ** * *
25219668 CAGGGGGAACC-AGGTTGATCCCCGGCTTGCACATTCTGCCTCTTC-GGTCGGTTGAGTGCCTGC
641 AAGGGGG-ACCAACG--GATCCCCGACTTGCACATTCTGCCTCTCCAACT-GGCTGAGCGCCTGC
*
25219731 ACACCCGTTTCATGGGTTGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCAGACC
702 ACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCAGACC
* * ** *
25219796 GAGGGTTATGGCAGC-GG---G---G-A-TC-----GGG-C----T-AATCCCCGGCTTGCCCAT
767 GAGGGTTATGGCAGCGGGACCGACAGAACGCAGAGGGGGACTGGGTCGATCCTTGGCTTGCGCAT
* * * ** ** *
25219841 TATGCCTCT-TCGGTCGGCTCAACGCCCCCATGCTCGTTT
832 TATGCCTCTCT-GATCGACTCAATGCCCGAACACTCATTT
** * * * * * *
25219880 CATGGGTTGACTTATACGTACAGAGTTCATTCCCAGTCTAAGATCCA-ACCGGATCGAGGGTTGC
1 CATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGAT-CAGATCGAACCGAGGGTTGT
* * ** * * * * * *
25219944 GACAGCAAGATCGACAGCACGTAGGGGGGATCAGG-CCAATCCCT-GACTTGCGCATTTTGCCTC
65 GGCAGCAAGATCCACAGCACACAGAGGGGA-CTGGACCGATCCCTGGA-TTACGCATTCTACCTC
* * * * * * * * * *
25220007 TTCGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCAA
128 TTCGACCGACTGAGCCCCCACACGCTCATTTCGTGCGTTGGCTAAGGCATACAGAGTTCATTCCA
*
25220072 TGTCTAAGCATACGGAGTTCATTCCCATTCTAAGAT
193 TGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
25220108 TTTGAGCCAC
Statistics
Matches: 894, Mismatches: 163, Indels: 72
0.79 0.14 0.06
Matches are distributed among these distances:
849 1 0.00
850 191 0.21
851 37 0.04
852 5 0.01
855 1 0.00
856 3 0.00
861 1 0.00
862 1 0.00
863 1 0.00
866 1 0.00
868 2 0.00
869 11 0.01
870 291 0.33
873 1 0.00
875 1 0.00
876 1 0.00
878 4 0.00
879 41 0.05
880 156 0.17
881 45 0.05
882 96 0.11
883 2 0.00
884 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (870 bp):
CATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGAACCGAGGGTTGTG
GCAGCAAGATCCACAGCACACAGAGGGGACTGGACCGATCCCTGGATTACGCATTCTACCTCTTC
GACCGACTGAGCCCCCACACGCTCATTTCGTGCGTTGGCTAAGGCATACAGAGTTCATTCCATGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCGATAGCAAGACC
AGCAGCAGGATCAACAGCACGTAAGGGGACCGAACCGAGCCCAGGCTTACGCATTCTGCCTCTCC
GACCGACCGAGCACTCGACGCTCGTTTCATCGGTTGGCTTAGGCAAACGAAGTTCATTCCATGTC
TAAGCCCCAGCCGGAACAAGGGTTGTAAGGACAAGTAGGATCGACAGCACACAGAGAGGGACCGA
GCTGATCCCCAGCTTGCACATTATGCCTCTCCAACTGACCTTTCTGACCGACTGAACGCCCGCAC
GCTCGTTTCATGGGTTAACTTAGGCAAACAGAGTTCATCCCCAGTCTAAGCATACGGAATTCATT
CCCAGTCTAAGATCAGACCGGACCGAGGATTACGGCAGCAGGATCGATAGCACGTAAGGGGGACC
AACGGATCCCCGACTTGCACATTCTGCCTCTCCAACTGGCTGAGCGCCTGCACACCCGTTTCATG
GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCAGACCGAGGGTTATGGCAG
CGGGACCGACAGAACGCAGAGGGGGACTGGGTCGATCCTTGGCTTGCGCATTATGCCTCTCTGAT
CGACTCAATGCCCGAACACTCATTT
Found at i:25224503 original size:27 final size:27
Alignment explanation
Indices: 25224468--25224520 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
25224458 CTTCCTCTCG
* *
25224468 CCATCCTTGGACTCTCGGTCACGGTCT
1 CCATCCTTGGACTCCCGATCACGGTCT
25224495 CCATCCTTGGACTCCCGATCACGGTC
1 CCATCCTTGGACTCCCGATCACGGTC
25224521 CTTCCCTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.40, G:0.21, T:0.26
Consensus pattern (27 bp):
CCATCCTTGGACTCCCGATCACGGTCT
Found at i:25226635 original size:26 final size:26
Alignment explanation
Indices: 25226605--25226654 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
25226595 GACTTAGGCT
25226605 TACGGAGTTCATCCCTAGTCTAAGCA
1 TACGGAGTTCATCCCTAGTCTAAGCA
* *
25226631 TACGGAGTTCATTCCTAGTGTAAG
1 TACGGAGTTCATCCCTAGTCTAAG
25226655 ATAAAACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATCCCTAGTCTAAGCA
Found at i:25226877 original size:158 final size:156
Alignment explanation
Indices: 25226628--25227129 Score: 542
Period size: 158 Copynumber: 3.2 Consensus size: 156
25226618 CCTAGTCTAA
* * ** * * *
25226628 GCATACGGAGTTCATTCCTAGTGTAAGATAAAACCGGACCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCAT-GTCTAAGACCACACCGGACAGAGGGTTGCGGCAGCAGGATCGACA
* * * *
25226693 GCACGCAGGGGGGACCGAGCCAATCCCCGGCTTACGCATTCTGCCTCTCTGACCAGCTGAGCGCC
65 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCC-GCTGAGCGCC
*
25226758 CGCACGCCCATTTCGTGGGTTGGCTTAG
129 CGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
25226786 GCATAGGGAGTTCATTCAATGTCTAAG-CCACACCGGACAGAGGGTTGTGGCAGCGGGA-CTGGC
1 GCATACGGAGTTCATTC-ATGTCTAAGACCACACCGGACAGAGGGTTGCGGCAGCAGGATC-GAC
* * * * * * * *
25226849 AGCACGTAGAGGGGGACCGGGCCGATCCCCAGCTTGCACATTATGCCTCTCTGGTCGGCTCAACA
64 AGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGG-CCGCTGAGCG
* * *
25226914 CCCGCATGCTCATTTCATGGGTTGACTTAG
127 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * **
25226944 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCA-AGGGTTACGATAGCAGGATCGAC
1 GCATACGGAGTTCATTCAT-GTCTAAGACCACACCGGA-CAGAGGGTTGCGGCAGCAGGATCGAC
* ** * *
25227008 AGCACGCAGGGGGGATCGGGTAGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGC
64 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCG-CTGAGCGC
*
25227073 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCATTTCGTGGGTTGGCTTAG
25227102 GCATACGGAGTTCATTCCATGTCTAAGA
1 GCATACGGAGTTCATT-CATGTCTAAGA
25227130 ATAGGAGCTC
Statistics
Matches: 279, Mismatches: 55, Indels: 20
0.79 0.16 0.06
Matches are distributed among these distances:
156 1 0.00
157 37 0.13
158 203 0.73
159 35 0.13
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (156 bp):
GCATACGGAGTTCATTCATGTCTAAGACCACACCGGACAGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGCTGAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:25227512 original size:26 final size:26
Alignment explanation
Indices: 25227481--25227533 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25227471 GTTGACTTAG
25227481 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
25227507 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
25227533 G
1 G
25227534 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:25228381 original size:26 final size:26
Alignment explanation
Indices: 25228351--25228403 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25228341 GTTTACTTAG
25228351 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
25228377 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
25228403 G
1 G
25228404 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:25229046 original size:26 final size:26
Alignment explanation
Indices: 25229017--25229069 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25229007 GTTGGCTTTG
25229017 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
25229043 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
25229069 G
1 G
25229070 ATTGAACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:25229144 original size:196 final size:196
Alignment explanation
Indices: 25228806--25229240 Score: 518
Period size: 196 Copynumber: 2.2 Consensus size: 196
25228796 ACGCTTGTTT
* * *
25228806 CATGGGTTGCCGTAGGCATACGGAGTTCATTCCATGTCTAAGCGTACAGAGTTCATTCCCAGTCT
1 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCT
* * * * * *
25228871 AAGATTCGATCGGACCGAGGTTACGGCAGCAGCACCAGTAGCAGGATCGACAGCATGCAGTGAGG
66 AAGATTCGACCGAACCGAGGTTACGACAGCAGCACCAGCAGCAGAAGCGACAGCATGCAGTGAGG
* * * * * * *
25228936 GATCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGTC-AGTTGAGCGCTCGCATGCTCAT
131 GACCGAGCCGATCCCCGGCTTACACATTCTACCTCTCCGATCGA-CTGAGCGCCCGCACGCCCAT
*
25229000 TT
195 TC
* * * **
25229002 CGTGGGTTGGCTTTGGCATATGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCT
1 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCT
* * * *
25229067 AAGATT-GAACCGAACCGAGGGTTGCGACAGCAGGACGAGCAGCAGAAGCGGCAGCATGCAAG-G
66 AAGATTCG-ACCGAACCGA-GGTTACGACAGCAGCACCAGCAGCAGAAGCGACAGCATGC-AGTG
* * * *
25229130 -GGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTTCGATCGACTGAGCGCCCGCACGCCC
128 AGGGACCGAGCCGATCCCCGGCTTACACATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCCC
25229194 ATTC
193 ATTC
* *
25229198 CATGGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGC
1 CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
25229241 CCCAGCCGGA
Statistics
Matches: 201, Mismatches: 34, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
195 1 0.00
196 164 0.82
197 34 0.17
198 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (196 bp):
CATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCT
AAGATTCGACCGAACCGAGGTTACGACAGCAGCACCAGCAGCAGAAGCGACAGCATGCAGTGAGG
GACCGAGCCGATCCCCGGCTTACACATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCCCATT
C
Found at i:25230283 original size:26 final size:26
Alignment explanation
Indices: 25230253--25230305 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25230243 GTTGACTTAG
25230253 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
25230279 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
25230305 G
1 G
25230306 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:25230745 original size:156 final size:157
Alignment explanation
Indices: 25230279--25230778 Score: 499
Period size: 159 Copynumber: 3.2 Consensus size: 157
25230269 CCCAGTCTAA
* *
25230279 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-ACAGTAGGATCGACA
* * * * ** *
25230344 GCACGCAGGGGGGACCGAGACAATCCCTGGCTTACGCATTCTGCCTCTCCGGTTGGCTGAGCGCC
65 GCATGCAGGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* *
25230409 CGCACGCCCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * *** *
25230437 GCATAAGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGTAGT-GAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTG-CACAGTAG-GATCG
* * * * * * * *
25230499 GCAACATGCAGAGGGGGACCGGGGT-GATCCCCAGCTTGCGTATTATGCCTCTCTGGCCGGCTCA
62 ACAGCATGCAG-GGGGGACC-GGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGGTCGGCTGA
** * * *
25230563 ATGCTCGCACGCTCATTTTGTGGGTTGACTTAG
125 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * *
25230596 GCATACGGAGTTCATTCCCAGTCTACGATCAGACCAGACTAAGGGTTGCACAGTAGGATCAATAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCACAGTAGGATCGACAG
* * * *
25230661 CATGCAGGGGGGA-TGGGTCGATCCCCAGCTTATGCATTCTACCTCTCCGGTCGGTTGAGCGCCC
66 CATGCAGGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
*
25230725 GCACGCTCATTTCGTTGGTTGGCTTAG
131 GCACGCTCATTTCGTGGGTTGGCTTAG
25230752 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
25230779 CGTACGGAGT
Statistics
Matches: 265, Mismatches: 66, Indels: 24
0.75 0.19 0.07
Matches are distributed among these distances:
155 7 0.03
156 79 0.30
157 10 0.04
158 66 0.25
159 98 0.37
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCACAGTAGGATCGACAG
CATGCAGGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:25230794 original size:26 final size:26
Alignment explanation
Indices: 25230755--25230804 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
25230745 GGCTTAGGCA
*
25230755 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTAATTCCCA-GTCTAAGCG
25230781 TACGGAGTTAATTCCCAGTCTAAG
1 TACGGAGTTAATTCCCAGTCTAAG
25230805 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTAATTCCCAGTCTAAGCG
Found at i:25230912 original size:184 final size:182
Alignment explanation
Indices: 25230596--25231504 Score: 696
Period size: 184 Copynumber: 5.0 Consensus size: 182
25230586 GTTGACTTAG
* * * * * * **
25230596 GCATACGGAGTTCATTCCCAGTCTACGATCAGACCAGACTAAGGGTTGC-ACAGTAGGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC-GAGGGTTACGGCAGCAGGATCAGCA
* * ** * * * *
25230660 GCATGCAGGGGGGA-TGGGTCGATCCCCAGCTTATGCATTCTACCTCTCCGGTCGGTTGAGCGCC
65 GCACGTA-GGGGGACCAGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGATCGATTGAGCGCC
*
25230724 CGCACGCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
25230778 GCGTACGGAGTTAATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCAGGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTACGGCAGCAGGATCAGCA
* * * *
25230843 GCACGTAGGGGGTA-CAGAGCCGATCCCCGGCTTATGCATTCTGCCTCTCTGATCGATTAAGCAC
65 GCACGTAGGGGG-ACCAG-GTCGATCCCCGGCTTATGCATTCTGCCTCTCCGATCGATTGAGCGC
* *
25230907 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGCTCATTCCTTGTCTAA
128 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * * *
25230962 GCCCCAGT-CGGA--TCGATGGTTCTAG-C--A-ATAGGACC---CGA---TAACGACATCAGCA
1 G---CA-TACGGAGTTC-AT--TCCCAGTCTAAGATCGGACCAGACGAGGGTTACGGCAGCAGGA
* * * * ** ** * * *
25231014 GC-GC-GCA-G-AGGGGGATCGGGTTGATCTTCGGCTTGCGCATTATGCCTCTCCGA-CCAGCTG
59 TCAGCAGCACGTAGGGGGACCAGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGATCGA-TTG
* * * *
25231074 AGCGCTCGCACGCTCGTTTCGTGGGTTGGCCTAGGCATATGGAGTTCATTCCATGTCTAA
123 AGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* **
25231134 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGTAGCAGGATCAATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC-GAGGGTTACGGCAGCAGGATCAGCA
* * * ** *
25231199 ACACGTAGGGGAGACCAGGTCAATCCCTGGCTTATGCATTCTGCCTCTCCGGCCGGTTGAGCGCC
65 GCACGTAGGGG-GACCAGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGATCGATTGAGCGCC
* * * * * *
25231264 CGTACGCTCGTTTCATGGGTTGGCTTAAGCATACAGAGTTTATTCCATGTCTAA
129 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
25231318 GCATTCAGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGAT-TGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTACGGCAGCAGGATCAG-C
* * * * * ** * * * *
25231382 AGGACGCAGGAAGGGACC-GGACCGATCCTCGACTTGCGTATTCTACCTCTCCGA-CCAGCTGAG
64 AGCACGTAGG--GGGACCAGG-TCGATCCCCGGCTTATGCATTCTGCCTCTCCGATCGA-TTGAG
* * * * * *
25231445 TGCCCGCACACCCATTTCGTGGGTTGGCTGAGGCGTAGGGAGTTCATTCCATGTCTAA
125 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
25231503 GC
1 GC
25231505 CCCAGTCGGA
Statistics
Matches: 563, Mismatches: 125, Indels: 75
0.74 0.16 0.10
Matches are distributed among these distances:
168 5 0.01
169 7 0.01
170 2 0.00
171 5 0.01
172 89 0.16
173 8 0.01
174 1 0.00
175 4 0.01
176 4 0.01
177 11 0.02
179 10 0.02
180 3 0.01
181 2 0.00
182 46 0.08
183 24 0.04
184 244 0.43
185 83 0.15
186 4 0.01
187 6 0.01
188 5 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACGAGGGTTACGGCAGCAGGATCAGCAG
CACGTAGGGGGACCAGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGATCGATTGAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:25231144 original size:26 final size:26
Alignment explanation
Indices: 25231108--25231160 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25231098 GTTGGCCTAG
*
25231108 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
25231134 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
25231160 G
1 G
25231161 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:25231318 original size:26 final size:26
Alignment explanation
Indices: 25231289--25231344 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
25231279 TGGGTTGGCT
*
25231289 TAAGCATACAGAGTTTATTCC-ATGTC
1 TAAGCATACAGAGTTCATTCCTA-GTC
*
25231315 TAAGCATTCAGAGTTCATTCCTAGTC
1 TAAGCATACAGAGTTCATTCCTAGTC
25231341 TAAG
1 TAAG
25231345 ATCGAACCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCTAGTC
Found at i:25232516 original size:158 final size:157
Alignment explanation
Indices: 25232015--25232516 Score: 440
Period size: 158 Copynumber: 3.2 Consensus size: 157
25232005 CCTAGTCTAT
* * * * * *
25232015 GCATATGTAGTTCATTCCCA-GTCTAAGATCAGACCGGA-CAGAGGGCTCCGACAGCAGGATCGA
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAAACTGGACCA-AGGGTTGCGGCAGCAGGATCGA
* * * * * *
25232078 CAGCATGTAGGGGGGACCGAGTCGATCCCTGGCTTGTGCATTCTACCTCTCCGATCGGTTGAGCA
64 CAGCACGCAGGGGGGACCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCG-TCGGCTGAGCG
* **
25232143 CCTGCACGCTTGTTTCATGGGTTGGCTTAG
128 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* * ** * * * *
25232173 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGAACCGAA-GGTTGTGGCAGCGGGATCGA
1 GCATATGGAGTTCATTCCATGTCTAAGATCAAACT-GGACC-AAGGGTTGCGGCAGCAGGATCGA
* * * * ** * * * * *
25232236 TAGCACGCAGAGGGGGACCGGGTTGAT-CATCAACTTACGCATTATGCCTCTTCGGCCGGCTCAG
64 CAGCACGCAG-GGGGGACCGAGTCGATCCCT-GGCTTGCGCATTCTGCCTC-TCCGTCGGCTGAG
* * * *
25232300 CGCCCGCACACTCATTTCATGTGTTGACTTAT
126 CGCCCGCACGCTCATTTCATGGGTTGGCTTAG
* * *
25232332 GCATACGAAGTTCATT-CATAGTCTAAGATCAAACTGGACCAAGGGTTGCGGCAGCAGGATCCAC
1 GCATATGGAGTTCATTCCAT-GTCTAAGATCAAACTGGACCAAGGGTTGCGGCAGCAGGATCGAC
* * *
25232396 AGCACGCAGGGGGGACCGAGTCGATCCCTGGCTTGCACATTCTGCCTCTCCAGTTGGCTGAGTGC
65 AGCACGCAGGGGGGACCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCC-GTCGGCTGAGCGC
* *
25232461 CCGCATGCTCATTTCGTGGGTTGGCTTAG
129 CCGCACGCTCATTTCATGGGTTGGCTTAG
* *
25232490 GCTTATGGAGTTCATTCCATGCCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
25232517 CATATAGAGT
Statistics
Matches: 260, Mismatches: 71, Indels: 26
0.73 0.20 0.07
Matches are distributed among these distances:
157 7 0.03
158 131 0.50
159 115 0.44
160 7 0.03
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAAACTGGACCAAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGTCGGCTGAGCGCCC
GCACGCTCATTTCATGGGTTGGCTTAG
Found at i:25233529 original size:158 final size:159
Alignment explanation
Indices: 25233183--25233556 Score: 421
Period size: 158 Copynumber: 2.4 Consensus size: 159
25233173 CGGCTGAGTG
* ** **
25233183 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAACCCCCAGTC
1 CCCGCACGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACC
* * ** * *
25233248 GGACCGAGGGTTGTGGCAGTGGGACCGATAGCACGCAGAGAGGGATCGGGTCGCTCCCCAGCTTG
66 GAACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGAGGGATCGGGTCGCTCCCCAGCTTA
* * * *
25233313 TGCATTATGCCTCTCAGGCCGGTTCAACG
131 TGCATTATACCTCTCAGGCCAGCTCAACA
* * ***
25233342 CCCGCACGCTCGTTTCGTGAGTTGATTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATTGAAC
1 CCCGCACGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCCAAC
* * * * * * *
25233406 CGAACCGAGGGTTGCGGTAGCAGGATCGACAGTACGTAG-GGGGGATCGGGTCGGTCCCCGGCTT
65 CGAACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGAGGGATCGGGTCGCTCCCCAGCTT
* * *
25233470 ATGCATTCTACCTCTCCGGTCAGCT-AAGCA
130 ATGCATTATACCTCTCAGGCCAGCTCAA-CA
* *
25233500 CCCGCACGCTCGTTTCGTGGGTTGGTTTAGGCATACGAAGTTAATTCCATGTCTAAG
1 CCCGCACGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAG
25233557 CATACGGAGT
Statistics
Matches: 178, Mismatches: 34, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
157 2 0.01
158 93 0.52
159 83 0.47
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
CCCGCACGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAACC
GAACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGAGGGATCGGGTCGCTCCCCAGCTTA
TGCATTATACCTCTCAGGCCAGCTCAACA
Found at i:25233567 original size:26 final size:26
Alignment explanation
Indices: 25233530--25233582 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25233520 GTTGGTTTAG
25233530 GCATACGAAGTTAATT-CCATGTCTAA
1 GCATACGAAGTTAATTCCCA-GTCTAA
* *
25233556 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
25233582 G
1 G
25233583 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGTCTAA
Found at i:25233694 original size:184 final size:184
Alignment explanation
Indices: 25233372--25233741 Score: 467
Period size: 184 Copynumber: 2.0 Consensus size: 184
25233362 GTTGATTTAG
* * * *
25233372 GCATACGGAGTTCATTCCTAGTCTAAGATTGAACCGAACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGAACCGAACAGAGGGTTGCGGCAGCAGGATCGACA
* * * ** * *
25233437 GTACGTAGGGGGGATCGGGTCGGTCCCCGGCTTATGCATTCTACCTCTCCGGTCAGCTAAGCACC
66 GCACGCAGGGGGGACCGGACCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCAGCTAAGCACC
* * *
25233502 CGCACGCTCGTTTCGTGGGTTGGTTTAGGCATACGAAGTTAATTCCATGTCTAA
131 CGCACGCTCGTTTCATGGATTGGCTTAGGCATACGAAGTTAATTCCATGTCTAA
* *
25233556 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATAGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-AGAACCGAACAGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
25233620 AGCACGCAGGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGT-TGACTGAA-C
65 AGCACGCAGGGGGGACCGGACCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCAG-CT-AAGC
* * * *
25233683 GCCCTCACGCTCGTTTCATGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
128 ACCCGCACGCTCGTTTCATGGATTGGCTTAGGCATACGAAGTTAATTCCATGTCTAA
25233740 GC
1 GC
25233742 CCCAGGTGGA
Statistics
Matches: 158, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
183 1 0.01
184 154 0.97
185 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATAGAACCGAACAGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGACCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCAGCTAAGCACC
CGCACGCTCGTTTCATGGATTGGCTTAGGCATACGAAGTTAATTCCATGTCTAA
Found at i:25233887 original size:159 final size:157
Alignment explanation
Indices: 25233596--25234374 Score: 601
Period size: 159 Copynumber: 4.9 Consensus size: 157
25233586 AGACCGGATA
* *
25233596 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGACCGATCCCTGGCTTGCGCATT
1 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCC-CGCTTGCGCATT
* * * * * * *
25233661 CTGCCTC-TCTGGTTGACTGAACGCCCT-CACGCTCGTTTCATGGATTGGCTTAGGCATACGGAG
65 ATGCCTCTTC-GGTCGACTGAGCG-CCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAG
25233724 TTCATTCCATGTCTAAGCCCCAGGTGGACC
128 TTCATTCCATGTCTAAGCCCCAGGTGGACC
* * * ** *
25233754 GAGGGTTGTGGCAGTAGGATCGACAGCACGCAGAGGGGGATCGGGCTAATCCCCAGCTTGCGTAT
1 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCC-GCTTGCGCAT
* *
25233819 TATGCCTTTTCGGTCGACTGAGCGCCTGTACACTCGTTT-GATGGGTTGACTTAGGCATACGGAG
64 TATGCCTCTTCGGTCGACTGAGCGCCTGCACACTCGTTTCG-TGGGTTGACTTAGGCATACGGAG
* ** ***
25233883 TTCATTGCCA-GCCTAAG-ATCAGACCAGACC
128 TTCATT-CCATGTCTAAGCCCCAG-GTGGACC
* * * *
25233913 GAGGGTTGCAGCAGCAGGATCAGA-AGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCACAG
1 GAGGGTTGCGGCAGCAGGATC-GACAGCACGCAGGGGGGACCGGGCCGATCCCCG-CTTGCGCAT
* * * * * *
25233977 TCTGCCTCTCCGG-CTAGCTGAGCGCC-GCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAG
64 TATGCCTCTTCGGTCGA-CTGAGCGCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAG
*
25234040 TTCATTCCATGTCTAAGCCCCA-GTCGGACT
128 TTCATTCCATGTCTAAGCCCCAGGT-GGACC
* * * * * * * ** * * *
25234070 GAGGATTG-GGTAGCGGGACCGGCAGCACGTAGAGGAGGACCGGGTTGATCCCTGGTATACGCAT
1 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCGCT-TGCGCAT
* * * * * * *
25234134 TATGCCTCTTCGGTCTACTCAGCGCCCGCACACTCGTTTCGTGGGTTGACTTATGTATATGAAGT
64 TATGCCTCTTCGGTCGACTGAGCGCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* ** * * *
25234199 TCATTCCCA-GTATAAG-ATCAGATCAGAAC
129 TCATT-CCATGTCTAAGCCCCAGGT-GGACC
* * * * * ** * * *
25234228 GAAGGTTACGGTAGCAGGATCGATAACACGTTGGGGGCCACCGGGCTGATCCCTGACTTGCGCAT
1 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGG-GACCGGGCCGATCCCCG-CTTGCGCAT
* * * ** ** * * *
25234293 TCTACCTCTCCGACCGGTTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
64 TATGCCTCTTCGGTCGACTGAGCGCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
25234358 TCATTCCATGTCTAAGC
129 TCATTCCATGTCTAAGC
25234375 ATACAGAGTT
Statistics
Matches: 485, Mismatches: 110, Indels: 50
0.75 0.17 0.08
Matches are distributed among these distances:
155 1 0.00
156 20 0.04
157 97 0.20
158 142 0.29
159 217 0.45
160 8 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGCTTGCGCATTA
TGCCTCTTCGGTCGACTGAGCGCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCCCCAGGTGGACC
Found at i:25235103 original size:25 final size:26
Alignment explanation
Indices: 25235067--25235118 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
25235057 GTTGACTTAG
*
25235067 GCATACGGAGTTCA-TCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
25235092 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
25235118 G
1 G
25235119 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:25235287 original size:26 final size:26
Alignment explanation
Indices: 25235251--25235302 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25235241 TTAGCTTAGA
*
25235251 CATACGGAGTTCATT-CCATGTCTAAG
1 CATAAGGAGTTCATTCCCA-GTCTAAG
25235277 CATAAGGAGTTCATTCCCAGTCTAAG
1 CATAAGGAGTTCATTCCCAGTCTAAG
25235303 ATTGAACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
CATAAGGAGTTCATTCCCAGTCTAAG
Found at i:25235381 original size:184 final size:182
Alignment explanation
Indices: 25235028--25235400 Score: 509
Period size: 184 Copynumber: 2.0 Consensus size: 182
25235018 CCTCTCTGGT
*
25235028 CGGCTGAGAGCCCGACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAATCTAAG
1 CGGCTGAGAGCCCGACGCTCATTTCGTGGGTTGACTTAGACATACGGAGTTCATCCCAATCTAAG
* *
25235093 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTGGCGGCAGCAGGATCGACAG
66 CATAAGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTGGCGGCAGCAGGATCGACAG
* * *
25235158 CACGTAGGAGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGAC
131 CACGCAGGAGGGACCAAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGAC
* * * *
25235210 CGGCTGAGCA-CCCGCACGTTCGTTTCGTGGGTT-AGCTTAGACATACGGAGTTCATTCCATGTC
1 CGGCTGAG-AGCCCG-ACGCTCATTTCGTGGGTTGA-CTTAGACATACGGAGTTCATCCCA-ATC
* * * * *
25235273 TAAGCATAAGGAGTTCATTCCCAGTCTAAGAT-TGAACCGAACGGAGGGTTGCGGTAGCAGGATC
62 TAAGCATAAGAAGTTCATTCCCAGTCTAAGATCAG-ACCGAACCGAGGGTGGCGGCAGCAGGATC
** *
25235337 GACAGCACGCAGGAGGGACCAAGTTGATCCCTAGCTTACGCATTCTGCCTCTCCGAC
126 GACAGCACGCAGGAGGGACCAAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGAC
*
25235394 TGGCTGA
1 CGGCTGA
25235401 ACGCCTGCAT
Statistics
Matches: 167, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
182 13 0.08
183 40 0.24
184 114 0.68
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (182 bp):
CGGCTGAGAGCCCGACGCTCATTTCGTGGGTTGACTTAGACATACGGAGTTCATCCCAATCTAAG
CATAAGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTGGCGGCAGCAGGATCGACAG
CACGCAGGAGGGACCAAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGAC
Found at i:25235883 original size:159 final size:158
Alignment explanation
Indices: 25235592--25235936 Score: 421
Period size: 159 Copynumber: 2.2 Consensus size: 158
25235582 CCATGTCTAA
* * *
25235592 GCATACGAAGTTCATTCCCAGTATAAAGATCAGACCAAATCGAGGGTTGTAGTAGCAGGATCGAC
1 GCATACGAAGTTCATTCCCAGTCT-AAGATCAGACCAAATCGAGGGTTGCAGTAGCAAGATCGAC
* ** *
25235657 AGCACGCAGGGGTGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGTTGAGCGC
65 AGCACGCAGGGGGGACCAGGAAGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGC
**
25235722 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
25235751 GCATACGGAA-TTCATTCCCAGTCTAAGATCGGACCGAA-CTGAGGGTTGCGGTAGCAAGATCGA
1 GCATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCAAATC-GAGGGTTGCAGTAGCAAGATCGA
* * * **
25235814 CAGCACGCGGGAGGGGACC-GGAAAGATCCCCGGCTTGTGCATTTTGCCTCTCCCGG-TGGCTGA
64 CAGCACGCAGG-GGGGACCAGG-AAGATCCCCGGCTTGCGCATTCTGCCTCT-CCGGCCAGCTGA
*
25235877 GTGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
126 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
25235910 GCATACAAAGTTCATT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
25235937 CATACGTAGC
Statistics
Matches: 160, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
157 1 0.01
158 49 0.31
159 103 0.64
160 7 0.04
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTGCAGTAGCAAGATCGACA
GCACGCAGGGGGGACCAGGAAGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:25236308 original size:26 final size:26
Alignment explanation
Indices: 25236278--25236329 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25236268 TGACTTAGGC
*
25236278 ATACGGAGTTCATCCCCAATCTAAGA
1 ATACGAAGTTCATCCCCAATCTAAGA
* *
25236304 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATCCCCAATCTAAGA
25236330 TCGAACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAATCTAAGA
Found at i:25236506 original size:355 final size:347
Alignment explanation
Indices: 25235421--25236999 Score: 1022
Period size: 355 Copynumber: 4.5 Consensus size: 347
25235411 GCCCGTTTCG
* * * * * * * *
25235421 TTCCATGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGTGGGAGCGGCAGCACGCAGAGGGGG
1 TTCCATGTCTAAGCCCCAGCTGGAC-AAGGGTTGTGGCAGCGAGACCGGCAACACGTAGAAGGGG
* * * * * * * * *
25235486 ATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCTCAGTGCCCGCACGCTCGTTT
65 ATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGACTCAGCGCCCACACGCTCATTT
* * * * * * *
25235551 CATAGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTAT
130 CATGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTAAGAATACGAAGTTCATTCCCAGTCT
* * * * * * *
25235616 AAAGATC-AGACCAAATCGAGGGTT-----GTAGTAGCAGGATCGACAGCACGCAGGGGTGACCA
195 -AAGATCGA-ACCAGACCAAGGGTTAGACAGCAGCAGCAGGATCGACAGCACGCAGGGGGGACCG
*** * * * * *
25235675 GG-CTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGTTGAGCGCCCGCACGCTCGTTTTGT
258 GGTC-GATCCGTAGCTTGCACATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCCCGTTTCGT
* *
25235739 GGGTTGGCTTAGGCATACGGAATTCA
322 GGGTTGGCTTAGGCATAGGGAGTTCA
** * * * * * * * * * * ** *
25235765 TTCCCA-GTCTAAG-ATCGGACCGAACTGAGGGTTGCGGTAGCAAGATCGACAGCACGCGGGAGG
1 TT-CCATGTCTAAGCCCCAG-CTGGAC-AAGGGTTGTGGCAGCGAGACCGGCAACACGTAGAAGG
* *** * * * * * * * * * *
25235828 GGACCGGAAAGATCCCCGGCTTGTGCATTTTGCCTCTCCCGG-TGGCTGAGTGCCCGCACGCTCG
63 GGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCT-TCGGCCGACTCAGCGCCCACACGCTCA
* ** * * * * *
25235892 TTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACGTAGCTCATTCCCAG
127 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTAAGAATACGAAGTTCATTCCCAG
* * * * * **
25235957 TATAAGATCGGACC-GAACTGAA-GGTT-GCAACAGTAGGACCAGCAGTAGGATGGGTAGCACGC
192 TCTAAGATCGAACCAG-AC-CAAGGGTTAG--AC---A-G--CAGCAGCAGGATCGACAGCACGC
* * * * * * * * * * * *
25236019 A-GGGGGATCAGGTCGATCCCTGGGTT-AAGCATTCTGCCTCTTCGACCGGTTAAGCTCCCGCAC
247 AGGGGGGACCGGGTCGATCCGTAGCTTGCA-CATTCTGCCTCTCCGGCCAGCTGAGCACCCGCAC
* * * * *
25236082 GCTCATTTTGTGGGTTGGCTTAGCCATACGGAGTTCA
311 GCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
* *
25236119 TTCTATGTCTAAGCCCCAGCTGGACCAAGGGTTGTGGCAGC-AGGATCGGCAAGGGGATCAGCAG
1 TTCCATGTCTAAGCCCCAGCTGGA-CAAGGGTTGTGGCAGCGA-GACCGGC-A----A-CA-C-G
* ** * *
25236183 CATGCAGATGGGGATCGGGTTGATCCCCGGCTTGCGCATTATGCCTC-TCTGGCCGACTGAGCGC
56 --T--AGAAGGGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTC-GGCCGACTCAGCGC
25236247 CCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-ATCTAAGAATACGAA
116 CCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATATCTAAGAATACGAA
* * *
25236311 GTTCATTCCCAGTCTAAGATCGAACCGGATCAAGGGTT-G-C-G-A-CAGCAGGATCGATAGCAC
180 GTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTAGACAGCAGCAGCAGGATCGACAGCAC
** * * * *
25236371 GCAGGGGGGATTGGGTCGATCTC-TGGCTTGCACATTCTGCCTCTCCAGTC-GACTGAGTACCCG
245 GCAGGGGGGACCGGGTCGATC-CGTAGCTTGCACATTCTGCCTCTCCGGCCAG-CTGAGCACCCG
*
25236434 TACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
308 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
* * *
25236474 TTCGATGTCTAAGCCCCAGCTGGACAAAGGGTTATGGCAGCGAGACCTGCAACACGTAGAAGGGG
1 TTCCATGTCTAAGCCCCAGCTGGAC-AAGGGTTGTGGCAGCGAGACCGGCAACACGTAGAAGGGG
* * * * * *
25236539 ATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGGCTCCGTGCCCGCATGCTCGTTT
65 ATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGACTCAGCGCCCACACGCTCATTT
* * ** * * * * *
25236604 CGTGGTTTGACTTTTGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT
130 CATGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTAAGAATACGAAGTTCATTCCCAGTCT
* * * *
25236669 AAGATCGAACCATACCGAGGGTTACGGCAACAGGACCAGCAGCAGGATCGGCAGCACGTAGGGGG
195 AAGATCGAACCAGACCAAGGGTTA--G--ACA-G--CAGCAGCAGGATCGACAGCACGCAGGGGG
* * * *
25236734 GACCGGGTCGATCCGTAGCTTGCGCATTCTGCCTCTCCGGCCAGTTGAGCGCCCGCACGCCTGTT
253 GACCGGGTCGATCCGTAGCTTGCACATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCCCGTT
*
25236799 TCATGGGTTGGCTTAGGCATAGGGAGTTCA
318 TCGTGGGTTGGCTTAGGCATAGGGAGTTCA
* * * * * * * * * *
25236829 TTCCATGTCTAAGCCTCAGCCGGATCGAGGGTTGTGGCAGTGGGACTGGTAGCACATA-AGGGGG
1 TTCCATGTCTAAGCCCCAGCTGGA-CAAGGGTTGTGGCAGCGAGACCGGCAACACGTAGAAGGGG
* * * * * * * *
25236893 A-CTGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACGGGCTCATCACCCGA-ACGCTCAT
65 ATC-GGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGACTCAGCGCCC-ACACGCTCAT
* *
25236956 TTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCA-ATCTAAGAA
128 TTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTAAGAA
25237000 CAGACTAGAT
Statistics
Matches: 979, Mismatches: 190, Indels: 124
0.76 0.15 0.10
Matches are distributed among these distances:
342 3 0.00
343 146 0.15
344 157 0.16
345 7 0.01
346 1 0.00
347 1 0.00
348 1 0.00
349 3 0.00
350 1 0.00
351 1 0.00
352 7 0.01
353 7 0.01
354 216 0.22
355 287 0.29
356 5 0.01
358 1 0.00
360 2 0.00
361 1 0.00
362 1 0.00
363 1 0.00
364 1 0.00
365 4 0.00
366 121 0.12
367 4 0.00
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (347 bp):
TTCCATGTCTAAGCCCCAGCTGGACAAGGGTTGTGGCAGCGAGACCGGCAACACGTAGAAGGGGA
TCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGACTCAGCGCCCACACGCTCATTTC
ATGGGTTGACTTAGGCATACGGAGTTCATCCCATATCTAAGAATACGAAGTTCATTCCCAGTCTA
AGATCGAACCAGACCAAGGGTTAGACAGCAGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGT
CGATCCGTAGCTTGCACATTCTGCCTCTCCGGCCAGCTGAGCACCCGCACGCCCGTTTCGTGGGT
TGGCTTAGGCATAGGGAGTTCA
Found at i:25236648 original size:26 final size:26
Alignment explanation
Indices: 25236619--25236671 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25236609 TTTGACTTTT
*
25236619 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
25236645 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
25236671 G
1 G
25236672 ATCGAACCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:25237683 original size:159 final size:158
Alignment explanation
Indices: 25237505--25237867 Score: 362
Period size: 159 Copynumber: 2.3 Consensus size: 158
25237495 GCACGCCCAT
* * * *
25237505 TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAG-CCAGA-TCGAGGGT
1 TTCATGGGATGACTTAGGCATACGGAGTTCATTCCATG-CTAAGCACCAGACCAGACT-GAGGGT
** * * * *
25237568 TGGGGTAGC-AGCACCGGCAGCATGCAGAAGGGG-ATCGGGCCGATCCCCGGCTTGTGCATTATG
64 TGCAGCAGCAAG-ACCGACAGCATGCA-AAGGGGAATCGGGCCAATCCCCGACTTGTGCATTATG
* * *
25237631 CCTCTCTGG-CTGCCTCAGCGCCCGTACGTTCG
127 CCTCTCCGGTC-GCCTCAGCGCCCATACGCTCG
* * * *
25237663 TTTCGTGGGATGACTTAGGCATACGGAGTTTATTCCCAAT-CTAAG-ATCAGACCGGACTGAGGG
1 -TTCATGGGATGACTTAGGCATACGGAGTTCATT-CC-ATGCTAAGCACCAGACCAGACTGAGGG
* * * *
25237726 TTGCAGCAGCAAGATCGACAGCATGCAAGGGGGAATCGGGTCAATCCCCGACTTGTGCATTCTGC
63 TTGCAGCAGCAAGACCGACAGCATGCAAAGGGGAATCGGGCCAATCCCCGACTTGTGCATTATGC
** *
25237791 CTCTCCGGTCGGTTGAGCGCCCATACGCTCG
128 CTCTCCGGTCGCCTCAGCGCCCATACGCTCG
* *
25237822 TTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTCATGGGATGACTTAGGCATACGGAGTTCATTCCATG-CTAAGCA
25237868 TACGAAGTTC
Statistics
Matches: 166, Mismatches: 28, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
156 2 0.01
157 2 0.01
158 42 0.25
159 112 0.67
160 6 0.04
161 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
TTCATGGGATGACTTAGGCATACGGAGTTCATTCCATGCTAAGCACCAGACCAGACTGAGGGTTG
CAGCAGCAAGACCGACAGCATGCAAAGGGGAATCGGGCCAATCCCCGACTTGTGCATTATGCCTC
TCCGGTCGCCTCAGCGCCCATACGCTCG
Found at i:25237870 original size:26 final size:26
Alignment explanation
Indices: 25237839--25237891 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25237829 GTTGGCTTAG
*
25237839 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
25237865 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
25237891 G
1 G
25237892 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:25238065 original size:26 final size:26
Alignment explanation
Indices: 25238035--25238087 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25238025 ATTGGCTTCG
25238035 GCATACAGAGTTCATTCCAT-GTCTAA
1 GCATACAGAGTTCATT-CATAGTCTAA
*
25238061 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCATAGTCTAA
25238087 G
1 G
25238088 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCATAGTCTAA
Found at i:25238805 original size:26 final size:26
Alignment explanation
Indices: 25238769--25238821 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25238759 GTTGACTTAG
25238769 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
25238795 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
25238821 G
1 G
25238822 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:25239320 original size:26 final size:26
Alignment explanation
Indices: 25239270--25239322 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25239260 GTTGGCTTAG
***
25239270 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
25239296 GCATACGGTGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
25239322 G
1 G
25239323 ATCGGACAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:25240311 original size:502 final size:502
Alignment explanation
Indices: 25239356--25240498 Score: 1453
Period size: 502 Copynumber: 2.3 Consensus size: 502
25239346 ATAGCAGGAC
* * * ** * * * *
25239356 CAGCAGAAGGATCGATAGCACGCAGTGGGGGATCGAGCCGATCCCTGGCTTGCACATTCTGCCTC
1 CAGCAGCAGGATCGACAGCACACAGAAGGGGACCGGGCTGGTCCCTGGCTTGCACATTCTGCCTC
* * * *
25239421 TCCGGTCAGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
66 TCCGGTCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCA
* ** *
25239486 TGTCTAAGCCCCAGTCGGATCAAGGGTTCTGGCAACAAGACCAACAGTGGGATCGACAGCCCACA
131 TGTCTAAGCCCCAGTCGGACCAAGGGTTCTGGCAACAAGACCAACAACGGGATCGACAACCCACA
* * * *** *
25239551 AAGGGGGACCGAGCTGATCCTCGACTTACGCAATATGCCTTTTCGGTTGGCATCTCTGGCCGACT
196 AAGGGGGACCGAGCTGATCCCCGACTTACGCAATATGCCTCTCCGCCAGGCATCTCCGGCCGACT
* * * *
25239616 GAGCGCCCACACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGCATTCTTTCCATGTCTAACCCC
261 GAGCGCCCACACGCCCGTTTCATGGCTTGGCTTAGGCATAGGGCATTCATTCCATGTCTAACCCA
* *
25239681 CAGCTGGACCGAGGGTTGTGGCAGCGGGACCGACATCATGCAGAGGGGGACCAGGCCGATCCTCG
326 CAGCTGGACCGAGGGTTGTGGCAGCAGGACCGACATCATGCAGAGAGGGACCAGGCCGATCCTCG
* * * * *
25239746 GCTTGTGCATTTTGCCTCTCCGACTGGCTCAGCGCCCGAATGCTCGTTTCGTGGGTTGACTTAGG
391 GCTTGCGCATTATGCCTCTCCGACTGGCTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAGG
* ** * * *
25239811 CATACAGATTTTGTTCATAGTCTAAGATTGGATCGGACCGAGTGTTA
456 CATACAGAGTTCATTCACAGTCTAAGATCGGACCGGACCGAGTGTTA
** * * * * ** * ** *
25239858 TGGTAGTAGGATTGATAGCACGTAGAAGGGGACCGGGCTGGTCCCTGGCTTACGTATTCTGCCTT
1 CAGCAGCAGGATCGACAGCACACAGAAGGGGACCGGGCTGGTCCCTGGCTTGCACATTCTGCCTC
* * * *
25239923 TTCGGTCGGCTTAGCGCTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATGCAGAGTTCATTCCA
66 TCCGGTCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCA
* * * * * * ** *
25239988 TGTCTAAGCCCCAGTCGGACCTAGGGTTGTGGTAGCAGGACCAGCAACGGGATCGGTAACCCGCA
131 TGTCTAAGCCCCAGTCGGACCAAGGGTTCTGGCAACAAGACCAACAACGGGATCGACAACCCACA
* * * * * *
25240053 AAGGGGGATCGAGTTGATCCCCGGCTTGCGCATTATGCCTCTCCAGCCAGG-ATCTCCGGCCGGC
196 AAGGGGGACCGAGCTGATCCCCGACTTACGCAATATGCCTCTCC-GCCAGGCATCTCCGGCCGAC
* * *
25240117 TGGGTGCCCACACGCCCGTTTCATGGCTTGGCTTAGGCATAGGG-AGTTCATTCCATGTCTAAGC
260 TGAGCGCCCACACGCCCGTTTCATGGCTTGGCTTAGGCATAGGGCA-TTCATTCCATGTCTAACC
* * * *
25240181 CATAGCTGGACCGAGGGTTGTGGTAGCAGGACTGACATCATGCAGAGAGGGACCAGGTCGATCCT
324 CACAGCTGGACCGAGGGTTGTGGCAGCAGGACCGACATCATGCAGAGAGGGACCAGGCCGATCCT
* *
25240246 CGGCTTGCGCATTATGCCTCTCCGATTGGCTTAGCGCCCGAACGCTCATTTCATGGGTTGACTTA
389 CGGCTTGCGCATTATGCCTCTCCGACTGGCTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTA
* * *
25240311 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGTGTTG
454 GGCATACAGAGTTCATTCACAGTCTAAGATCGGACCGGACCGAGTGTTA
* **
25240360 CAGCAGCAGGATCGACAGCACACAGGAGGGGACCGGGCTGGTCCCTGGCTTGCACATTCCACCTC
1 CAGCAGCAGGATCGACAGCACACAGAAGGGGACCGGGCTGGTCCCTGGCTTGCACATTCTGCCTC
* *
25240425 TCCGATCGGCTGAGTGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCA
66 TCCGGTCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCA
25240490 TGTCTAAGC
131 TGTCTAAGC
25240499 ATACGGAGTT
Statistics
Matches: 539, Mismatches: 100, Indels: 4
0.84 0.16 0.01
Matches are distributed among these distances:
501 1 0.00
502 535 0.99
503 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (502 bp):
CAGCAGCAGGATCGACAGCACACAGAAGGGGACCGGGCTGGTCCCTGGCTTGCACATTCTGCCTC
TCCGGTCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCA
TGTCTAAGCCCCAGTCGGACCAAGGGTTCTGGCAACAAGACCAACAACGGGATCGACAACCCACA
AAGGGGGACCGAGCTGATCCCCGACTTACGCAATATGCCTCTCCGCCAGGCATCTCCGGCCGACT
GAGCGCCCACACGCCCGTTTCATGGCTTGGCTTAGGCATAGGGCATTCATTCCATGTCTAACCCA
CAGCTGGACCGAGGGTTGTGGCAGCAGGACCGACATCATGCAGAGAGGGACCAGGCCGATCCTCG
GCTTGCGCATTATGCCTCTCCGACTGGCTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAGG
CATACAGAGTTCATTCACAGTCTAAGATCGGACCGGACCGAGTGTTA
Found at i:25240507 original size:26 final size:26
Alignment explanation
Indices: 25240471--25240523 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25240461 GTTGGCTTAG
25240471 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
25240497 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
25240523 G
1 G
25240524 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:25240912 original size:26 final size:26
Alignment explanation
Indices: 25240863--25240915 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25240853 GTTGGCTTAG
* *
25240863 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCAGGTCTAA
25240889 GCATACAGAGTTCATTCTC-GGTCTAA
1 GCATACAGAGTTCATTC-CAGGTCTAA
25240915 G
1 G
25240916 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAGGTCTAA
Found at i:25241309 original size:165 final size:165
Alignment explanation
Indices: 25241096--25241395 Score: 424
Period size: 165 Copynumber: 1.8 Consensus size: 165
25241086 TGGGTTGGCT
* *
25241096 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCAGTGGGATC-
1 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAGGATCA
* * *
25241160 GACAGCACACAAAGGGGGATCAGGTCGATCCTCTGCTTGCGCACTATGCCTCTCCGACCGGCTCA
66 G-CAGCACACAAAGAGGGATCAGGTCGATCCTCGGCTTGCACACTATGCCTCTCCGACCGGCTCA
25241225 GCGCCCACACGCTCTTTTTGTGGGTTGACTTAAGCA
130 GCGCCCACACGCTCTTTTTGTGGGTTGACTTAAGCA
* *
25241261 TAGGCATAGGGAGTTCATTCGATGTCTATGCCCCAG-CTGGACCGAGGGTTGTGGCAGTAGGATC
1 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGCAGTAGGATC
** * * * * * * *
25241325 AGCAGCATGCAGAGAGGGATCGGGTTGATCCTCGGCTTGCACATTCTGCCTCTCCGACCGGTTGA
65 AGCAGCACACAAAGAGGGATCAGGTCGATCCTCGGCTTGCACACTATGCCTCTCCGACCGGCTCA
25241390 GCGCCC
130 GCGCCC
25241396 GCACACTCGT
Statistics
Matches: 117, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
164 1 0.01
165 115 0.98
166 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (165 bp):
TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAGGATCA
GCAGCACACAAAGAGGGATCAGGTCGATCCTCGGCTTGCACACTATGCCTCTCCGACCGGCTCAG
CGCCCACACGCTCTTTTTGTGGGTTGACTTAAGCA
Found at i:25242490 original size:159 final size:159
Alignment explanation
Indices: 25242213--25242675 Score: 565
Period size: 159 Copynumber: 2.9 Consensus size: 159
25242203 AACCAAACCG
* * * *
25242213 AGGGTTGCGACAGCAGGATCGACAGCACGTAGGAGGGACCGGGCCGATCCCCAGCTTGCGCATTC
1 AGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTC
* * * *
25242278 TGCCTCTTCGGTCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTC
66 TGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
*
25242343 ATTCCATGTCTAAGCCCCAG-CCGGACCA
131 ATTCCATGTCTAAGCACCAGACCGGACCA
* * ** * *
25242371 AGGGTTGTGACAGC-GAGACCGACAGCACACAGAGGGGGATCGGGTCGATCCTCGGCTTGCACAT
1 AGGGTTGCGACAGCAG-GATCGACAGCACGTAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCAT
* * * * * * *
25242435 TATGCCTCTCCGGTTGGCTCAACGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGACT
64 TCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
* * * *
25242500 TCATTTCCA-GTCTAAG-ATCGGACTGGATCA
129 TCA-TTCCATGTCTAAGCACCAGACCGGACCA
* * * *
25242530 AGGGTTACGACAGCAGGATCGACAGCACGTAGGGGGGATTGGGTCGGTCCCCGGCTTACGCATTC
1 AGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTC
* * * *
25242595 TGCCTCTCCGGCCGGTTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTC
66 TGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
25242660 ATTCCATGTCTAAGCA
131 ATTCCATGTCTAAGCA
25242676 TACGGAGTTC
Statistics
Matches: 251, Mismatches: 47, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
157 6 0.02
158 118 0.47
159 121 0.48
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (159 bp):
AGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTC
TGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCACCAGACCGGACCA
Found at i:25242677 original size:26 final size:26
Alignment explanation
Indices: 25242647--25242699 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25242637 GTTGGCTTAG
25242647 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
25242673 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
25242699 G
1 G
25242700 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:25243056 original size:26 final size:26
Alignment explanation
Indices: 25243027--25243079 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25243017 GTTGACTTAG
25243027 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
25243053 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
25243079 G
1 G
25243080 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:25243167 original size:184 final size:184
Alignment explanation
Indices: 25242977--25243422 Score: 486
Period size: 184 Copynumber: 2.4 Consensus size: 184
25242967 CCCCGACCTA
* * * **
25242977 CCTCTCCGGCCGGTTGAGCGCCCGTACGCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGGCCGGCTAAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
25243042 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTACGGCAG
66 CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTACAGCAG
* * *
25243107 CAGGATCGACAACACG-TAGGGGAGACCGAGCCGATCCTTGGCTTATGCATTATG
131 CAGGATCGACAACACGTTAGGGG-GACCGAGCCGATCCCTGACTTACGCATTATG
* * * ** *
25243161 CCTCTCCGGCCGACTCAA-CGCCCGAATGCTCATTTCGTGGGTTGACTTAGGCATATAGAGTTAA
1 CCTCTCCGGCCGGCT-AAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * ** * * *
25243225 TCCTCAGTATAAGCATACAGAGTTCATTCTTAGTCTAAGATCGAACCGGACCAAGGGTTGCAGTA
65 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTACAGCA
* * * * * *
25243290 GCAGGATCGACAGCACGTTAGGGGGATCGGGTCGATCCCTGACTTGCGCATTCTG
130 GCAGGATCGACAACACGTTAGGGGGACCGAGCCGATCCCTGACTTACGCATTATG
** * * *
25243345 CCTCTCCGGCCGGCTAAGCGCCCGCCCGC-CTGTTTCGTGGGTTGGCTTAGGTATAGGGAGTTCA
1 CCTCTCCGGCCGGCTAAGCGCCCGAACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
25243409 T-TCCATGTCTAAGC
65 TCCCCA-GTCTAAGC
25243423 CACAGTCGGA
Statistics
Matches: 212, Mismatches: 45, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
183 5 0.02
184 200 0.94
185 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
CCTCTCCGGCCGGCTAAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTACAGCAG
CAGGATCGACAACACGTTAGGGGGACCGAGCCGATCCCTGACTTACGCATTATG
Found at i:25244318 original size:159 final size:157
Alignment explanation
Indices: 25244139--25244502 Score: 390
Period size: 158 Copynumber: 2.3 Consensus size: 157
25244129 CCGCACGCCT
* *
25244139 GTTTTGTGGGTTGGCTTAGGCATAGTGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGT
1 GTTTCGTGGGTTGGCTTAGGCATAG-GAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGT
** * * * *
25244204 TGTGGCAGCGGGACCGACATCACGCAAAGGGGGATCGGG-CGGATCCTCGACTTGCGCATTATGC
65 TACGGCAGCAGGACCGACAGCACGC-AAGGGGGATCGGGTC-GATCCCCGACTTGCGCATTATAC
* * *
25244268 CTTTTCGGCCGGCTCAGCGCTCAAACGCTC
128 CTCTTCGGCCGGCTCAGCACCCAAACGCTC
* ***** *
25244298 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGACCGAGGG
1 GTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAGGG
* * * * *
25244362 TTACGGTAGTAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACC
64 TTACGGCAGCAGGACCGACAGCACGCAAGGGGGATCGGGTCGATCCCCGACTTGCGCATTATACC
* * * **
25244427 TCTTCGGTCGGTTGAGCACCCGCACGCTC
129 TCTTCGGCCGGCTCAGCACCCAAACGCTC
* *
25244456 GTTTCGTGGGTTGGCTTATGCATACAGAGTTCATTCCATGTCTAAGC
1 GTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGC
25244503 ATACGGAGTT
Statistics
Matches: 169, Mismatches: 32, Indels: 9
0.80 0.15 0.04
Matches are distributed among these distances:
157 3 0.02
158 93 0.55
159 69 0.41
160 4 0.02
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.26
Consensus pattern (157 bp):
GTTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTT
ACGGCAGCAGGACCGACAGCACGCAAGGGGGATCGGGTCGATCCCCGACTTGCGCATTATACCTC
TTCGGCCGGCTCAGCACCCAAACGCTC
Found at i:25244479 original size:158 final size:156
Alignment explanation
Indices: 25244003--25244501 Score: 513
Period size: 159 Copynumber: 3.2 Consensus size: 156
25243993 CAGTCTTAGA
* *
25244003 ATACCGAGTTCATTCCCA-GTCTAAGATCAGATCGAAACGAGGGTTACGGTAGTAGGATCGACAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGAACGAGGGTTACGGTAGTAGGATCGACAG
* * * * * * * *
25244067 CACGTAGGGGGACCAGGACGATCCTTGGCTTGTGCATTCTGCCTCTCCGATCGGTTGAGCACCCG
65 CACGCAGGGGGATC-GGGCGATCCTCGACTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCACCCG
*
25244132 CACGC-CTGTTTTGTGGGTTGGCTTAGGC
129 CACGCTC-GTTTCGTGGGTTGGCTTAGGC
** * * ** * ** *
25244160 ATA-GTGAGTTCATTCCATGTCTAAGCCCCA-ACCGGATCGAGGGTTGTGGCAGCGGGACCGACA
1 ATACG-GAGTTCATTCCATGTCTAAG-ATCAGATCGGAACGAGGGTTACGGTAGTAGGATCGACA
* * * * * * *
25244223 TCACGCAAAGGGGGATCGGGCGGATCCTCGACTTGCGCATTATGCCTTTTCGGCCGGCTCAGCGC
64 GCACGC--AGGGGGATCGGGC-GATCCTCGACTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCAC
* ** *
25244288 TCAAACGCTCGTTTCGTGGGTTGACTTAGGC
126 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
** *
25244319 ATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGACCGAGGGTTACGGTAGTAGGATCGACAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGAACGAGGGTTACGGTAGTAGGATCGACAG
* *
25244383 CACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTTCGGTCGGTTGAGCACCC
65 CACGCA-GGGGGATCGGG-CGATCCTCGACTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCACCC
*
25244448 GCACGCTCGTTTCGTGGGTTGGCTTATGC
128 GCACGCTCGTTTCGTGGGTTGGCTTAGGC
*
25244477 ATACAGAGTTCATTCCATGTCTAAG
1 ATACGGAGTTCATTCCATGTCTAAG
25244502 CATACGGAGT
Statistics
Matches: 270, Mismatches: 59, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 51 0.19
158 97 0.36
159 114 0.42
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (156 bp):
ATACGGAGTTCATTCCATGTCTAAGATCAGATCGGAACGAGGGTTACGGTAGTAGGATCGACAGC
ACGCAGGGGGATCGGGCGATCCTCGACTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCACCCGCA
CGCTCGTTTCGTGGGTTGGCTTAGGC
Found at i:25244511 original size:26 final size:26
Alignment explanation
Indices: 25244475--25244527 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25244465 GTTGGCTTAT
25244475 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
25244501 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
25244527 G
1 G
25244528 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:25244700 original size:26 final size:26
Alignment explanation
Indices: 25244671--25244723 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25244661 GTTGACTTAG
*
25244671 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
*
25244697 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
25244723 G
1 G
25244724 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:25245057 original size:159 final size:156
Alignment explanation
Indices: 25244697--25245057 Score: 348
Period size: 159 Copynumber: 2.3 Consensus size: 156
25244687 CCCAGTCTAA
* * * * *
25244697 GCATACGGAGTTCATTACCAGTCTAAGATCGGATCGGATCGAAGGTTGCGACAACAGGATCGGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGATTGGACCGAGGGCTGCGACAACAGGATCGACA
* * * *
25244762 GCACGCAGGGGGATCGGGCTGATCCCCTGCTTACGCATTCTGCCTCTCCGACCAGCTAAGCGCCC
65 GCACGCAGGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACCAGCTAAGCACCC
* * *
25244827 GCATGCCCATTTCGTGGCTTGGCTTAG
130 GAACGCACATTTCGTGGCTTGGCTTAG
* * * * ** * * * * * * * *
25244854 GGATAGGGAGTTCAGTCCATGTCTAAGCTCCAACTGAACTGAGGGCTGTGGCAGCGGGATCGATA
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGATTGGACCGAGGGCTGCGACAACAGGATCGACA
* * * *
25244919 GCACGCAGAGGGGGACCGGG-TCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCC-GACTCAGC
65 GCACGC--AGGGGGACCGGGCT-GATCCCCGGCTTACGCATTATGCCTCTCCGACCAG-CTAAGC
* *
25244982 ACCCGAACGCACATTTCGTGGGTTGTCTTAG
126 ACCCGAACGCACATTTCGTGGCTTGGCTTAG
*
25245013 GCATACGGAGTTTATTCCCAGTCTAAGATCGGATTGGACCGAGGG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGATTGGACCGAGGG
25245058 TTACGGTAGC
Statistics
Matches: 156, Mismatches: 42, Indels: 10
0.75 0.20 0.05
Matches are distributed among these distances:
156 3 0.02
157 48 0.31
158 2 0.01
159 100 0.64
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGATTGGACCGAGGGCTGCGACAACAGGATCGACAG
CACGCAGGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACCAGCTAAGCACCCG
AACGCACATTTCGTGGCTTGGCTTAG
Found at i:25245282 original size:13 final size:13
Alignment explanation
Indices: 25245264--25245298 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
25245254 TACGCATTCT
25245264 ACCTCTCTGACCG
1 ACCTCTCTGACCG
*
25245277 ACCTCTTTGACCG
1 ACCTCTCTGACCG
*
25245290 GCCTCTCTG
1 ACCTCTCTG
25245299 GTCGGTTGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.11, C:0.43, G:0.17, T:0.29
Consensus pattern (13 bp):
ACCTCTCTGACCG
Found at i:25245371 original size:26 final size:26
Alignment explanation
Indices: 25245341--25245393 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25245331 GTTGACTTAG
*
25245341 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
*
25245367 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
25245393 G
1 G
25245394 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:25245868 original size:26 final size:26
Alignment explanation
Indices: 25245832--25245884 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25245822 GTTGGCTTAG
25245832 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
25245858 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
25245884 G
1 G
25245885 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:25246035 original size:26 final size:26
Alignment explanation
Indices: 25246005--25246057 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25245995 TTTGGCTTAG
*
25246005 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
25246031 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
25246057 G
1 G
25246058 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:25246336 original size:673 final size:666
Alignment explanation
Indices: 25245301--25246524 Score: 1598
Period size: 673 Copynumber: 1.8 Consensus size: 666
25245291 CCTCTCTGGT
* *
25245301 CGGTTGAGCTCCCGCACACTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * * *
25245366 AGCATACGGAGCTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTTCAGCGTAGGATCGACA
66 AGCATACGAAGCTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCGCAGGATCAACA
* * * *
25245431 GCACGCAGGGGGACCGAGTCGATCCTCGACTTGCGCATTCTGCCTCTCCAGCCCGCCCATACACC
131 GCACGCAGGGGCACCGAGTCGATCCTAGACTTGCGCATTCTACCTCTCCAGCCCGCCCACACACC
* *
25245496 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGG
196 CATTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGG
** * * *
25245561 TTGTGGCAGCAGGACCGGCAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGTGGATTATGC
261 TTGTGGCAGCAGGACCGGCAGCACACAGAGGGGGATCGGGCCAATCCCCGGCCTGCGCATTATGC
* * ** * * * *
25245626 CTCTCCGGCTGGCTCAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATT
326 CTCTCCGACCGGCTCAGCGCCCAAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
* * * *
25245691 CCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGATAGCAGGATCGACAGTACGTA-GG-GGGAT
391 CCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAGGATCGACAGCACGCAGGGAGGGAT
* ** * * *
25245754 CGGACCGGTCCTCGGCTTACGCATTCTACCT-TTCTGGCCAACTAAGCACCCACACGCTCATTTC
456 CGGACCGGTCCCCAACTTACACATTCTACCTCTTC-GACCAACTAAGCACCCACACACTCATTTC
*
25245818 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTA
520 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTA
25245883 AGATCGGACCAGACCGAGTAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGTG
585 AGATCGGACCAGACCGAGTAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGTG
25245948 TATTCTACCTCTCCAAC
650 TATTCTACCTCTCCAAC
* * *
25245965 CGGTTGAGCGCCCGCACGCTCGTTTCATGGTTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * *
25246030 AGCATATGAAGTTCATTCCCAGTCTAAGATCGGATCAGACGGAGGGTTGCGGCAGCAGGATCAAC
66 AGCATACGAAGCTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGC-GCAGGATCAAC
* * *
25246095 AGCACGTACGGGGCACTGGGTCGATTCCTAG-CTTGCGCATTCTACCTCTCC-GACCGGCTGAGC
130 AGCACGCA-GGGGCACCGAGTCGA-TCCTAGACTTGCGCATTCTACCTCTCCAG-CC--C---GC
* * * *
25246158 ACC-CACATGCCTATTTCATGGGTTGGCTTAGGTATAGAGAGTTCATTCCATGTCTAAGCTCTAG
187 -CCACACA--CCCATTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAG
** ** * * * * *
25246222 -CTGGACTGATTGTTGTGGCAGCGGGACTGGCAGCACATAGAGGGGGATTGGGCCAATCCTCGGC
249 TC-GGACCAAGGGTTGTGGCAGCAGGACCGGCAGCACACAGAGGGGGATCGGGCCAATCCCCGGC
* * *
25246286 CTGCGCATTATGCTTCTCCGACCGGCTCAGTGCCCAAACGCTCATTTCGTGGGTTGACTTAGGTA
313 CTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCAAACGCTCATTTCGTGGGTTGACTTAGGCA
*
25246351 TACGAAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACGATAGCAGGATCGACAGCA
378 TACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAGGATCGACAGCA
* * ** ** * *
25246416 CGCAGGGAGGGATCGGGCCGGTCCCCAACTTACACATTCTGCCTCTTCGACCGGCTGGGCGCCTA
443 CGCAGGGAGGGATCGGACCGGTCCCCAACTTACACATTCTACCTCTTCGACCAACTAAGCACCCA
* *
25246481 CACACTCGTTTCATGGGTTGGCTTAGGCTTACGGAGTTCATTCC
508 CACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
25246525 CAGTCTTAAG
Statistics
Matches: 469, Mismatches: 75, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
664 105 0.22
665 17 0.04
666 33 0.07
667 5 0.01
668 1 0.00
671 5 0.01
672 3 0.01
673 215 0.46
674 2 0.00
675 80 0.17
676 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (666 bp):
CGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCATACGAAGCTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCGCAGGATCAACA
GCACGCAGGGGCACCGAGTCGATCCTAGACTTGCGCATTCTACCTCTCCAGCCCGCCCACACACC
CATTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGG
TTGTGGCAGCAGGACCGGCAGCACACAGAGGGGGATCGGGCCAATCCCCGGCCTGCGCATTATGC
CTCTCCGACCGGCTCAGCGCCCAAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
CCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAGGATCGACAGCACGCAGGGAGGGAT
CGGACCGGTCCCCAACTTACACATTCTACCTCTTCGACCAACTAAGCACCCACACACTCATTTCA
TGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCGGACCAGACCGAGTAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGTGT
ATTCTACCTCTCCAAC
Found at i:25246613 original size:673 final size:662
Alignment explanation
Indices: 25245301--25246705 Score: 1517
Period size: 673 Copynumber: 2.1 Consensus size: 662
25245291 CCTCTCTGGT
* *
25245301 CGGTTGAGCTCCCGCACACTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * * *
25245366 AGCATACGGAGCTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTTCAGCGTAGGATCGACA
66 AGCATACGAAGCTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCGCAGGATCAACA
* * * *
25245431 GCACGCAGGGGGACCGAGTCGATCCTCGACTTGCGCATTCTGCCTCTCCAGCCCGCCCATACACC
131 GCACGCAGGGGCACCGAGTCGATCCTAGACTTGCGCATTCTACCTCTCCAGCCCGCCCACACACC
* *
25245496 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGG
196 CATTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGG
** * * *
25245561 TTGTGGCAGCAGGACCGGCAGCACACAGAGGGGGATCGGGCTGATCCCCGGCTTGTGGATTATGC
261 TTGTGGCAGCAGGACCGGCAGCACACAGAGGGGGATCGGGCCAATCCCCGGCCTGCGCATTATGC
* * ** * * * *
25245626 CTCTCCGGCTGGCTCAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATT
326 CTCTCCGACCGGCTCAGCGCCCAAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
* * * *
25245691 CCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGATAGCAGGATCGACAGTACGTAGGGGGATCG
391 CCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAGGATCGACAGCACGCAGGGGGATCG
* ** * * * *
25245756 GACCGGTCCTCGGCTTACGCATTCTACCTTTCTGGCCAACTAAGCACCCACACGCTCATTTCGTG
456 GACCGGTCCCCAACTTACACATTCTACCTTTCTGACCAACTAAGCACCCACACACTCATTTCATG
*
25245821 GGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
521 GGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAG-TCATACCCAGTCTAAGA
* * * * * * *
25245886 TCGGACCAGACCGAGTAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCTGGCTTGTGTAT
585 TAGCACCAGA-CGAGCAGGATCGACAACACGCAGGGGGGACCGAGCCAATCCCTGGCTTGTGTAT
25245951 TCTACCTCTCCAAC
649 TCTACCTCTCCAAC
* * *
25245965 CGGTTGAGCGCCCGCACGCTCGTTTCATGGTTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * *
25246030 AGCATATGAAGTTCATTCCCAGTCTAAGATCGGATCAGACGGAGGGTTGCGGCAGCAGGATCAAC
66 AGCATACGAAGCTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGC-GCAGGATCAAC
* * *
25246095 AGCACGTACGGGGCACTGGGTCGATTCCTAG-CTTGCGCATTCTACCTCTCC-GACCGGCTGAGC
130 AGCACGCA-GGGGCACCGAGTCGA-TCCTAGACTTGCGCATTCTACCTCTCCAG-CC--C---GC
* * * *
25246158 ACC-CACATGCCTATTTCATGGGTTGGCTTAGGTATAGAGAGTTCATTCCATGTCTAAGCTCTAG
187 -CCACACA--CCCATTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAG
** ** * * * * *
25246222 -CTGGACTGATTGTTGTGGCAGCGGGACTGGCAGCACATAGAGGGGGATTGGGCCAATCCTCGGC
249 TC-GGACCAAGGGTTGTGGCAGCAGGACCGGCAGCACACAGAGGGGGATCGGGCCAATCCCCGGC
* * *
25246286 CTGCGCATTATGCTTCTCCGACCGGCTCAGTGCCCAAACGCTCATTTCGTGGGTTGACTTAGGTA
313 CTGCGCATTATGCCTCTCCGACCGGCTCAGCGCCCAAACGCTCATTTCGTGGGTTGACTTAGGCA
*
25246351 TACGAAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACGATAGCAGGATCGACAGCA
378 TACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAGGATCGACAGCA
* * ** ** * *
25246416 CGCAGGGAGGGATCGGGCCGGTCCCCAACTTACACATTCTGCCTCTTC-GACCGGCTGGGCGCCT
443 CGCA-GG-GGGATCGGACCGGTCCCCAACTTACACATTCTACCT-TTCTGACCAACTAAGCACCC
* *
25246480 ACACACTCGTTTCATGGGTTGGCTTAGGCTTACGGAGTTCATTCC-CAGTCTTAAG-AT-CGGA-
505 ACACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAC-GTC-TAAGCATACGGAG
* ** * *
25246541 TCGA-ACCTAGGGT-TGGGGCAATAGCACCAG-C-AGCAGGATCGACAACACGTAGGGGGGATCG
568 TC-ATACCCA--GTCT-AAG--ATAGCACCAGACGAGCAGGATCGACAACACGCAGGGGGGACCG
*** * * ****
25246602 AGCCAATCCCTGGCCAATGCATTCTGCCTCTCTGGT
627 AGCCAATCCCTGGCTTGTGTATTCTACCTCTCCAAC
** * * * * *
25246638 CGACTGAGTGCCCGTACAC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTC
1 CGGTTGAGCGCCCGCACACTC-GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTC
25246701 TAAGC
64 TAAGC
25246706 CCCAACCGGA
Statistics
Matches: 610, Mismatches: 105, Indels: 43
0.80 0.14 0.06
Matches are distributed among these distances:
664 105 0.17
665 17 0.03
666 33 0.05
667 5 0.01
668 1 0.00
671 5 0.01
672 12 0.02
673 321 0.53
674 11 0.02
675 85 0.14
676 15 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (662 bp):
CGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCATACGAAGCTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCGCAGGATCAACA
GCACGCAGGGGCACCGAGTCGATCCTAGACTTGCGCATTCTACCTCTCCAGCCCGCCCACACACC
CATTTCATGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCAAGGG
TTGTGGCAGCAGGACCGGCAGCACACAGAGGGGGATCGGGCCAATCCCCGGCCTGCGCATTATGC
CTCTCCGACCGGCTCAGCGCCCAAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
CCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAGGATCGACAGCACGCAGGGGGATCG
GACCGGTCCCCAACTTACACATTCTACCTTTCTGACCAACTAAGCACCCACACACTCATTTCATG
GGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGGAGTCATACCCAGTCTAAGAT
AGCACCAGACGAGCAGGATCGACAACACGCAGGGGGGACCGAGCCAATCCCTGGCTTGTGTATTC
TACCTCTCCAAC
Found at i:25246866 original size:26 final size:26
Alignment explanation
Indices: 25246837--25246889 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25246827 GTTGGCTTAG
25246837 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
25246863 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
25246889 G
1 G
25246890 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:25247596 original size:26 final size:26
Alignment explanation
Indices: 25247560--25247612 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25247550 GTTGACTTAG
*
25247560 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
25247586 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
25247612 G
1 G
25247613 ATCAAATGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:25248808 original size:26 final size:26
Alignment explanation
Indices: 25248772--25248827 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
25248762 TGGGTTGACT
*
25248772 TAAGCATACAAAGTTCATCCCCAGTC
1 TAAGCATACAAAGTTCATCCCCAATC
* *
25248798 TAAGCATACAAAGTTTATTCCCAATC
1 TAAGCATACAAAGTTCATCCCCAATC
25248824 TAAG
1 TAAG
25248828 ATTAGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.27
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATCCCCAATC
Found at i:25248988 original size:26 final size:26
Alignment explanation
Indices: 25248959--25249011 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25248949 GTTAGCTTAG
*
25248959 GCATACGAAGTTTATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
25248985 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
25249011 G
1 G
25249012 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:25249802 original size:158 final size:157
Alignment explanation
Indices: 25249486--25249790 Score: 353
Period size: 158 Copynumber: 1.9 Consensus size: 157
25249476 TCCCGGTCGA
* * *
25249486 CTGAGCACCCACACCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCCTCAGTCTAAGCA
1 CTGAGCACCCACACCTCATTTCATGGGTTAACTTAGGCATACAGAGTCCATCCTCAGTCTAAGCA
* * * * * * *
25249551 TACGGAGTTCATTCCCTATCTAAGATCGAATCAGTTCGAGGGTTGCAGTAGCAGGATCGATAGCA
66 TACAGAGTTCATTCACTACCTAAGATCGAACCAGATCGAGGGTTGCAGTAGCAAGATCGACAGCA
** * *
25249616 CGTAAGAGGGACCGGGCCGATCCCCGG
131 CACAAGAGGGACCGAGCCGATACCCGG
* * * * * * *
25249643 CTGAGCGCCCATACGCTCATTTCTTGGGTTGACTTAGGCATATAGTGTCCATCCTCAGTCTAGGC
1 CTGAGCACCCACAC-CTCATTTCATGGGTTAACTTAGGCATACAGAGTCCATCCTCAGTCTAAGC
*
25249708 ATACAGAGTTTATTCAC-AGCCTAAGATCGAACC-GAATCGAGGGTTGCAGTAGCAAGATCGACA
65 ATACAGAGTTCATTCACTA-CCTAAGATCGAACCAG-ATCGAGGGTTGCAGTAGCAAGATCGACA
* *
25249771 GCACACAGGGGGGACCGAGC
128 GCACACAAGAGGGACCGAGC
25249791 TTGTACCCGG
Statistics
Matches: 122, Mismatches: 23, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
157 14 0.11
158 108 0.89
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (157 bp):
CTGAGCACCCACACCTCATTTCATGGGTTAACTTAGGCATACAGAGTCCATCCTCAGTCTAAGCA
TACAGAGTTCATTCACTACCTAAGATCGAACCAGATCGAGGGTTGCAGTAGCAAGATCGACAGCA
CACAAGAGGGACCGAGCCGATACCCGG
Found at i:25249893 original size:26 final size:26
Alignment explanation
Indices: 25249864--25249916 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25249854 GTTAGCTTAG
*
25249864 GCATACGGAGTTCATTCACAGACTAA
1 GCATACAGAGTTCATTCACAGACTAA
* * *
25249890 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGACTAA
25249916 G
1 G
25249917 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGACTAA
Found at i:25249967 original size:184 final size:183
Alignment explanation
Indices: 25249642--25250064 Score: 442
Period size: 184 Copynumber: 2.3 Consensus size: 183
25249632 CCGATCCCCG
* * * * * * * *
25249642 GCTGAGCGCCCATACGCTCATTTCTTGGGTTGACTTAGGCATATA-GTGTCCATCCTCAGTCTAG
1 GCTGAGCGCCCGTACGCTCATTTCATGGGTTG-CTTAGGCATA-AGGAGTTCATTCACAGACTAA
* *
25249706 GCATACAGAGTTTATTCACAGCCTAAGATCGAACCGAATCGAGGGTTGCAGTAGCAAGATCGACA
64 GCATACAGAGTTCATTCACAGCCTAAGATCGAACCGAATCGAGGGTTGCAGCAGCAAGATCGACA
* *
25249771 GCACACAGGGGGGACC-GAGCTTG-TACCCGGCTTATGCATTCTACCTCTCCGGCCA
129 GCACACAGGGGGGACCAG-GC-AGATACCCGGCTTATGCATTCTACCTCTCCGACCA
* *
25249826 GCTGAGCGCCCGTACGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCACAGACTAAG
1 GCTGAGCGCCCGTACGCTCATTTCATGGGTT-GCTTAGGCATAAGGAGTTCATTCACAGACTAAG
* * * * * * **
25249891 CATATAGAGTTCATTCCCAGTCTAAGATCGGACC-AGATCGAGGGTTGC-GACAGTAGGATCGGT
65 CATACAGAGTTCATTCACAGCCTAAGATCGAACCGA-ATCGAGGGTTGCAG-CAGCAAGATCGAC
** * * * *
25249954 AGCACGTAGGGGGGACCAGGCAGATCCCCGGCTTGTGCATTTTCCCTCTCCGACCA
128 AGCACACAGGGGGGACCAGGCAGATACCCGGCTTATGCATTCTACCTCTCCGACCA
* * * * *
25250010 ACTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTC
1 GCTGAGCGCCCGTACGCTCATTTCATGGGTT-GCTTAGGCATAAGGAGTTCATTC
25250065 CATGTCTAAG
Statistics
Matches: 198, Mismatches: 35, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
183 3 0.02
184 193 0.97
185 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.24
Consensus pattern (183 bp):
GCTGAGCGCCCGTACGCTCATTTCATGGGTTGCTTAGGCATAAGGAGTTCATTCACAGACTAAGC
ATACAGAGTTCATTCACAGCCTAAGATCGAACCGAATCGAGGGTTGCAGCAGCAAGATCGACAGC
ACACAGGGGGGACCAGGCAGATACCCGGCTTATGCATTCTACCTCTCCGACCA
Found at i:25250208 original size:159 final size:159
Alignment explanation
Indices: 25250018--25250393 Score: 463
Period size: 159 Copynumber: 2.4 Consensus size: 159
25250008 CAACTGAGCA
*
25250018 CCCGCACACTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCTAG-C
1 CCCGCACACTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCC-AGAC
* * ** * *
25250082 CAGACCAAGGGTTGTGGTAGCAGGATCGGTAGCATGCAGAGGGGGATCGGGTCGATCCCCGGCTT
65 CAGACCAAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGATCGGGCCCATCCCCGGCTT
*
25250147 GCACAATATGCCTCTCCG-GCTGGCTCAATG
130 GCACAATATGCCTCTCCGATC-GGCTCAATG
* * * * * ** *
25250177 CCCGTACACTCTTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCAGAT
1 CCCGCACACTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCCCAGAC
* *
25250241 CAGACCGAGGGTTGCGGCAGCAGGATCGACAGCATGGAGAGGGGGATCGGGCCCATCCCCGGCTT
65 CAGACCAAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGATCGGGCCCATCCCCGGCTT
* * * * *
25250306 GCGCATTCTGCCTCTCCGATCGGCTGAGTG
130 GCACAATATGCCTCTCCGATCGGCTCAATG
* *
25250336 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACA-GAGTTCATTCCATGTCTAAGC
1 CCCGCACACTCATTTCATGGGTTGGCTTAGGCATA-AGGAGTTCATTCCATGTCTAAGC
25250394 ATACGGAGTT
Statistics
Matches: 182, Mismatches: 30, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
158 5 0.03
159 173 0.95
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
CCCGCACACTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCAGACC
AGACCAAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGATCGGGCCCATCCCCGGCTTG
CACAATATGCCTCTCCGATCGGCTCAATG
Found at i:25250402 original size:26 final size:26
Alignment explanation
Indices: 25250366--25250418 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25250356 GTTGGCTTAG
25250366 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
25250392 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
25250418 G
1 G
25250419 ATCAGACCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:25250438 original size:185 final size:190
Alignment explanation
Indices: 25250207--25250590 Score: 492
Period size: 197 Copynumber: 2.0 Consensus size: 190
25250197 GTTGACTTAG
*
25250207 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGG-T-T-GC-G-GCAGCAGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGAGCAGCAGGAT
* * * * * * *
25250267 CGACAGCATGGAGAGGGGGATCGGGCCCATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTG
66 CGACAGCACGCAGAGGGGGACCAGGCCCATCCCCAGCTTGCGCATTCTACCTCTCCGATCGGCTC
* *
25250332 AGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
131 AGTGCCCGCACGCTCATTTCGTGGGTTGACCTAGGCATACAGAGTTCATTCCATGTCTAA
**
25250392 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCATG-TTGAGGGTTACGGTAGCAGGACCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTT---GTAGCA-G---AGC
* * * *
25250456 AGCAGGATCGACAGCACGCAGGGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTACCTCTTCG
58 AGCAGGATCGACAGCACGCAGAGGGGGACCAGGCCCATCCCCAGCTTGCGCATTCTACCTCTCCG
* *
25250521 GTCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCATGTC
123 ATCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACCTAGGCATACAGAGTTCATTCCATGTC
25250586 TAA
188 TAA
25250589 GC
1 GC
25250591 CCCTGCCAGA
Statistics
Matches: 168, Mismatches: 18, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
185 40 0.24
186 2 0.01
190 1 0.01
191 2 0.01
193 1 0.01
197 122 0.73
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (190 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGAGCAGCAGGAT
CGACAGCACGCAGAGGGGGACCAGGCCCATCCCCAGCTTGCGCATTCTACCTCTCCGATCGGCTC
AGTGCCCGCACGCTCATTTCGTGGGTTGACCTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:25250775 original size:26 final size:26
Alignment explanation
Indices: 25250746--25250798 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25250736 GTTGACTTAG
*
25250746 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTTATCCCCAGTCTAA
*
25250772 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTTATCCCCAGTCTAA
25250798 G
1 G
25250799 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTTATCCCCAGTCTAA
Found at i:25251137 original size:25 final size:26
Alignment explanation
Indices: 25251088--25251139 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25251078 GGTTGGTTAG
25251088 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
25251114 GCATACCGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
25251139 G
1 G
25251140 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:25251422 original size:159 final size:158
Alignment explanation
Indices: 25251214--25251614 Score: 434
Period size: 159 Copynumber: 2.5 Consensus size: 158
25251204 TCGACTTACG
* * * * *
25251214 CATTCTGCCTCTCCGGCCAGTTGAGCGCCCGCACGCCCGTTCCATGGGTTGGCTTAGGCATAGGG
1 CATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * ** * *
25251279 AGTTCATTCCATGTCTCAGACCTAG-CCAGACCGAGGGTTGTGGTTGCGGGA-CTGACAGCACGT
66 AGTTCATTCCATGTCTAAGA-CTAGACCAGACCAAGGGTTGAGGCAGCAGGATC-GACAGAACGT
*
25251342 AGAGGGGGA-TCGGGTCGATCCCTTGCTTGCA
129 AG-GGGGGACT-GGGTCGATCCCTAGCTTGCA
* * * * *
25251373 CATTATGCCTCTCCGGTCAGCTCAGCGCTCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
1 CATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * * * * *
25251438 AGTTCATTCCCA-GTCTAAGATTGGATCGGATCAAGGGTTGAGGCAGTAGGATCGACAGAACGTA
66 AGTTCATT-CCATGTCTAAGACTAGACCAGACCAAGGGTTGAGGCAGCAGGATCGACAGAACGTA
* *
25251502 GGGGGGACTGGGTCGGTCCCTAGCTTGCG
130 GGGGGGACTGGGTCGATCCCTAGCTTGCA
* * * *
25251531 TATTCTGCATCTCCGACCGGCTGAGC-CCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
1 CATTCTGCCTCTCCGGCCAGCTGAGCGCCC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
*
25251595 GAGTTCATTCCATGTTTAAG
65 GAGTTCATTCCATGTCTAAG
25251615 CATATGAAGC
Statistics
Matches: 200, Mismatches: 36, Indels: 13
0.80 0.14 0.05
Matches are distributed among these distances:
157 5 0.03
158 92 0.46
159 99 0.50
160 4 0.02
ACGTcount: A:0.17, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
CATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGACTAGACCAGACCAAGGGTTGAGGCAGCAGGATCGACAGAACGTAG
GGGGGACTGGGTCGATCCCTAGCTTGCA
Found at i:25252342 original size:26 final size:26
Alignment explanation
Indices: 25252306--25252358 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25252296 GTTGACTTAC
25252306 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
25252332 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
25252358 G
1 G
25252359 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:25252747 original size:159 final size:159
Alignment explanation
Indices: 25252371--25252773 Score: 393
Period size: 159 Copynumber: 2.5 Consensus size: 159
25252361 CGGATCGGAC
* * * * * * * *
25252371 CGAGGGTTGAGGCAGCAGGATCGGCAGCACGCAG-GGGGGACC-AGACCGATCCCCGGCTTGCAC
1 CGAGGGTTGTGGCAGCAGGACCGACAACACGCAGAGGGGGACCGAG-CCAATCCTCGGCTTACGC
*** * * * * * *
25252434 ATTCCACCTCTTCGGCCGG-TTGAGAGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGG
65 ATTATGCCCCATCGGCCGGCTCG-GTGCCCGTACGCCCGTTTCATGGGTTGACTTAGGCATAAGG
*
25252498 AGTTCATTCCATGTCTAAGCCCCAACCAGAT
129 AGTTCATTCCATGTCTAAGCCCCAACCAGAA
** * * * * *** **
25252529 CGAGGGTTGTGGCAGTGGGATCGACAGCATGCAGAGGGGGACCGGGTTGATCCTCGGCTTGTGCA
1 CGAGGGTTGTGGCAGCAGGACCGACAACACGCAGAGGGGGACCGAGCCAATCCTCGGCTTACGCA
* * *
25252594 TTATGCCTCATCGGCCGGCTCGGTGCCCGTACGCCTGTTTTATGGGTTGACTTAGGCATAAGGAG
66 TTATGCCCCATCGGCCGGCTCGGTGCCCGTACGCCCGTTTCATGGGTTGACTTAGGCATAAGGAG
25252659 TTCATTCCATGTCTAAGCCCCAACC-GAA
131 TTCATTCCATGTCTAAGCCCCAACCAGAA
* * * *
25252687 CTGAGGGTTGTGGTAGCAGGACCGGCAACACGTAGAGGGGGATCGAGCCAATCC-CTGGCTTACG
1 C-GAGGGTTGTGGCAGCAGGACCGACAACACGCAGAGGGGGACCGAGCCAATCCTC-GGCTTACG
* *
25252751 CATTATGCCCCTTCGGTCGGCTC
64 CATTATGCCCCATCGGCCGGCTC
25252774 AGCGTCTGCA
Statistics
Matches: 200, Mismatches: 40, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
158 33 0.17
159 164 0.82
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (159 bp):
CGAGGGTTGTGGCAGCAGGACCGACAACACGCAGAGGGGGACCGAGCCAATCCTCGGCTTACGCA
TTATGCCCCATCGGCCGGCTCGGTGCCCGTACGCCCGTTTCATGGGTTGACTTAGGCATAAGGAG
TTCATTCCATGTCTAAGCCCCAACCAGAA
Found at i:25252798 original size:159 final size:159
Alignment explanation
Indices: 25252371--25252825 Score: 364
Period size: 159 Copynumber: 2.9 Consensus size: 159
25252361 CGGATCGGAC
* * * * * * * *
25252371 CGAGGGTTGAGGCAGCAGGATCGGCAGCACGCAG-GGGGGACC-AGACCGATCCCCGGCTTGCAC
1 CGAGGGTTGTGGCAGCAGGACCGACAACACGCAGAGGGGGACCGAG-CCAATCCTCGGCTTACGC
*** * * * * * * * ** * *
25252434 ATTCCACCTCTTCGGCCGGTTGAGAGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
65 ATTATGCCCCATCGGCCGGCTCAGCGCCCGCACGCCTGTCCCATGGGTTGACTTAGGCATAAGGA
*
25252499 GTTCATTCCATGTCTAAGCCCCAACCAGAT
130 GTTCATTCCATGTCTAAGCCCCAACCAGAA
** * * * * *** **
25252529 CGAGGGTTGTGGCAGTGGGATCGACAGCATGCAGAGGGGGACCGGGTTGATCCTCGGCTTGTGCA
1 CGAGGGTTGTGGCAGCAGGACCGACAACACGCAGAGGGGGACCGAGCCAATCCTCGGCTTACGCA
* * * * ***
25252594 TTATGCCTCATCGGCCGGCTCGGTGCCCGTACGCCTGTTTTATGGGTTGACTTAGGCATAAGGAG
66 TTATGCCCCATCGGCCGGCTCAGCGCCCGCACGCCTGTCCCATGGGTTGACTTAGGCATAAGGAG
25252659 TTCATTCCATGTCTAAGCCCCAACC-GAA
131 TTCATTCCATGTCTAAGCCCCAACCAGAA
* * * *
25252687 CTGAGGGTTGTGGTAGCAGGACCGGCAACACGTAGAGGGGGATCGAGCCAATCC-CTGGCTTACG
1 C-GAGGGTTGTGGCAGCAGGACCGACAACACGCAGAGGGGGACCGAGCCAATCCTC-GGCTTACG
* * * * *
25252751 CATTATGCCCCTTCGGTCGGCTCAGCGTCTGCATG-CTCGTCCCATGGGTTGACTTAGGCATATA
64 CATTATGCCCCATCGGCCGGCTCAGCGCCCGCACGCCT-GTCCCATGGGTTGACTTAGGCATA-A
*
25252815 -GAGTTTATTCC
127 GGAGTTCATTCC
25252826 CAATCTCAGA
Statistics
Matches: 239, Mismatches: 52, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
158 35 0.15
159 202 0.85
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
CGAGGGTTGTGGCAGCAGGACCGACAACACGCAGAGGGGGACCGAGCCAATCCTCGGCTTACGCA
TTATGCCCCATCGGCCGGCTCAGCGCCCGCACGCCTGTCCCATGGGTTGACTTAGGCATAAGGAG
TTCATTCCATGTCTAAGCCCCAACCAGAA
Found at i:25253766 original size:170 final size:169
Alignment explanation
Indices: 25253542--25253861 Score: 439
Period size: 170 Copynumber: 1.9 Consensus size: 169
25253532 GCTGACCGCC
* *
25253542 TGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGG
1 TGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-CCAG-TCGG
* * * *
25253607 ACTGAGGGTTGCGTCAGCAAGACCAGCAGTAGGATCGACCGCACGTAG-GGGGGACCGGACCGAT
64 ACCGAGGGTTGCGGCAGCAAGACCAGCAGTAGGATCGACAGCACGTAGAAGGGGACCGGACCGAT
*
25253671 CC-CAGGCTTGCGCATTTTGCCTGTCCGGCCGGACTCTCACT
129 CCTCA-GCTTGCGCATTATGCCTGTCCGGCCGGACTCTCACT
* *
25253712 TGTACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTTATT-CCATGTCTAAGCCAGTCGGA
1 TGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCCAGTCGGA
* * * * * * *
25253776 CCGAGGGTTGTGGCAGCAGGACCGGTAGTGGGATCGACAGCACGTAGAAGGGGACCGGGCTGATC
65 CCGAGGGTTGCGGCAGCAAGACCAGCAGTAGGATCGACAGCACGTAGAAGGGGACCGGACCGATC
25253841 CTCAGCTTGCGCATTATGCCT
130 CTCAGCTTGCGCATTATGCCT
25253862 CTTCGGTCGG
Statistics
Matches: 131, Mismatches: 16, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
168 44 0.34
169 36 0.27
170 51 0.39
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (169 bp):
TGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCAGTCGGAC
CGAGGGTTGCGGCAGCAAGACCAGCAGTAGGATCGACAGCACGTAGAAGGGGACCGGACCGATCC
TCAGCTTGCGCATTATGCCTGTCCGGCCGGACTCTCACT
Found at i:25254607 original size:26 final size:26
Alignment explanation
Indices: 25254578--25254630 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25254568 GTTGGCTTAG
25254578 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
25254604 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
25254630 G
1 G
25254631 ATTAGATCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:25254806 original size:26 final size:26
Alignment explanation
Indices: 25254769--25254821 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25254759 CTTGGCTTAG
*
25254769 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
25254795 GCATACGAAGTTGATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
25254821 G
1 G
25254822 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:25255273 original size:157 final size:155
Alignment explanation
Indices: 25254795--25255293 Score: 529
Period size: 159 Copynumber: 3.2 Consensus size: 155
25254785 CCCAGTCTAA
* * **
25254795 GCATACGAAGTTGATTCCCA-GTCTAAGATCGAACTGGACCGAGGGTTGCGGTAGCAGGATCGGT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAAC-GGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * *
25254859 AGCACGCAGGGGGGATCGGACCGATCCTC-GCTTGCGCATTCTGCTCTCTGACCTATTGAACACC
64 AGCACGCAGGGGGGATCGGGCCGATCC-CGGCTTGCGCATTCTGCTCTCTGACCGACTGAGCACC
* *
25254923 CGCACGCCCGTTTCATGGGTTGGCTTAG
128 CGCACGCTCATTTCATGGGTTGGCTTAG
* ** * * * * * *
25254951 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGGTGTGGCAGCAGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGA-ACGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * *
25255016 GCACGCAGAGGGGGA-CTGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCTGACCGACTCAGCA
65 GCACGCAG-GGGGGATC-GGGCCGAT-CCCGGCTTGCGCATTCTG-CTCTCTGACCGACTGAGCA
*
25255080 CCCGCACGCTCATTTCATGGGTTGACTTAG
126 CCCGCACGCTCATTTCATGGGTTGGCTTAG
* *
25255110 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCGGACCGAGGGTTGCAGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-GAACGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * ** * * *
25255174 AGTACGTAGGGTGGATCGGGTCGATCCCGGCTTACGCATTCTGCTTTTCCCATCGGCTGAGCGCC
64 AGCACGCAGGGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGC-TCTCTGACCGACTGAGCACC
**
25255239 CGCACGCTCATTTCGGGGGTTGGCTTAG
128 CGCACGCTCATTTCATGGGTTGGCTTAG
25255267 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
25255294 CATACGAAGT
Statistics
Matches: 281, Mismatches: 50, Indels: 23
0.79 0.14 0.06
Matches are distributed among these distances:
155 3 0.01
156 59 0.21
157 91 0.32
158 26 0.09
159 98 0.35
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACGGACCGAGGGTTGCGGTAGCAGGATCGACAG
CACGCAGGGGGGATCGGGCCGATCCCGGCTTGCGCATTCTGCTCTCTGACCGACTGAGCACCCGC
ACGCTCATTTCATGGGTTGGCTTAG
Found at i:25255304 original size:26 final size:26
Alignment explanation
Indices: 25255267--25255319 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25255257 GTTGGCTTAG
*
25255267 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGAAGTTCATTTCCA-GTCTAA
25255293 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTTCCAGTCTAA
25255319 G
1 G
25255320 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTTCCAGTCTAA
Found at i:25255452 original size:183 final size:184
Alignment explanation
Indices: 25255110--25255917 Score: 832
Period size: 184 Copynumber: 4.3 Consensus size: 184
25255100 GTTGACTTAG
* *
25255110 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * * * *
25255175 GTACGTAGGGTGGATCGGGTCGATCCC-GGCTTACGCATTCTGCTTTTCCCATCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
**
25255239 CGCACGCTCATTTCGGGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
25255293 GCATACGAAGTTCATTTCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * ** * * *
25255358 GCACGC-GGGGTGGACCGGGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGATCAC
66 GCACGCAGGGG-GGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * ** *
25255422 CCGTACGCTCGTTTTGTGGGTTGG-TTAGGCATATGGAGTTCATTCCATGTCTAA
130 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
25255476 GCATACAGAGTTCATTGCTAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAGGACCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG-T-T----GC--G----GTA
* * * * *
25255541 GCAGGATCGGCAGGACGCAAGGAGGGACCGAGCCGATCCCTGGCTTGCGTATTCTACCTCTCCGA
54 GCAGGATCGACAGCACGC-AGGGGGGACCGGGCCGATCCCTGGCTTACG----C-A--T-T-C--
* * * * *
25255606 TCAACCTCTCCGGCCGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGT
107 T--GCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGT
*
25255671 TCATCCCCA-GTCTAA
170 TCAT-TCCATGTCTAA
* * *
25255686 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * *
25255751 GCACGCAGGGGGGATCAGGTCGATCCCTGACTTATGCATTCTGCCTCTCCGACCGACTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
25255816 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* *
25255870 GCCTACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
25255918 TGATAGCAAG
Statistics
Matches: 514, Mismatches: 79, Indels: 63
0.78 0.12 0.10
Matches are distributed among these distances:
182 3 0.01
183 145 0.28
184 159 0.31
185 1 0.00
186 1 0.00
188 1 0.00
189 3 0.01
190 1 0.00
191 1 0.00
192 1 0.00
193 1 0.00
195 18 0.04
196 23 0.04
197 25 0.05
198 18 0.04
200 1 0.00
201 1 0.00
202 1 0.00
203 1 0.00
204 3 0.01
205 1 0.00
207 1 0.00
208 1 0.00
209 36 0.07
210 64 0.12
211 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:25255690 original size:26 final size:26
Alignment explanation
Indices: 25255660--25255712 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25255650 GTTGACTTAG
*
25255660 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
25255686 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
25255712 G
1 G
25255713 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:25255877 original size:26 final size:26
Alignment explanation
Indices: 25255847--25255896 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
25255837 GGCTTAGGCA
25255847 TACGGAGTTCATT-CCATGTCTAAGCC
1 TACGGAGTTCATTCCCA-GTCTAAGCC
25255873 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
25255897 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCC
Found at i:25255973 original size:393 final size:390
Alignment explanation
Indices: 25255227--25256253 Score: 1116
Period size: 393 Copynumber: 2.6 Consensus size: 390
25255217 CTTTTCCCAT
* * *
25255227 CGGCTGAGCGCCCGCACGCTCATTTCGGGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCT
1 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCT
* * *
25255291 AAGCATACGAAGTTCATTTCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGTAGGATCGA
65 AAGCATACG-AGTTCA-TTCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGTAGCAGGATCGA
* * * ** ** *
25255356 CAGCACGC-GGGGTGGACCGGGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGATC
128 CAGCACGCAGGGG-GGA-CGGGCCGATCCCTGACTTGTGCATTCTGCCTCTCCGACCGACTGAGC
* * * * * *
25255420 ACCCGTACGCTCGTTTTGTGGGTTGG-TTAGGCATATGGAGTTCATTCCATGTCTAAGCATACAG
191 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTACAG
* * * * * * *
25255484 AGTTCATTGCTAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAGGACCAGTAGCAGGATC
256 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAAGACCAGTAGAAAGATC
* * ** * *
25255549 GGCAGGACGCAAGGAGGGACCGAGCCGATCCCTGGCTTGCGTATTCTACCTCTCCGATCAACCTC
321 GACAGCACGCAAGGAGGGACCGAGCCGATCCC-CACTTGCGCATTCTACCTCTCCGACCAACCTC
25255614 TCCGGC
385 TCCGGC
* * *
25255620 CGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
** *
25255685 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAGGATCAAC
66 AGCATAC-GAGTTCATT-CCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * *
25255750 AGCACGCAGGGGGGATCAGGTCGATCCCTGACTTATGCATTCTGCCTCTCCGACCGACTGAGCGC
129 AGCACGCAGGGGGGA-CGGGCCGATCCCTGACTTGTGCATTCTGCCTCTCCGACCGACTGAGCGC
* *
25255815 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTACGGAG
193 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTACAGAG
* *
25255880 TTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGATAGCAAGACCAGTAGAAAGATCGA
258 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAAGACCAGTAGAAAGATCGA
* * * * * *
25255945 CAGCATGC-AGG-GGGAACTGGGTCGATCCCCACTTTCGCATTCTACCTCTCCGACCAGCCTCTC
323 CAGCACGCAAGGAGGG-ACCGAGCCGATCCCCACTTGCGCATTCTACCTCTCCGACCAACCTCTC
25256008 CGGC
387 CGGC
* * * *** ** * * *
25256012 CTGTTGAACGCCCGTGTGCTTGTTTCGTGGGTTGACTTAGGTATACAGAGTTCATCCCCAATCTA
1 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* **
25256077 AGCATAC--G--------AGTCTAAGATCAAACTGGACCGAGGGTTGCGACAGCAGGATCGACAG
66 AGCATACGAGTTCATTCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGTAGCAGGATCGACAG
* * * * * *
25256132 CACGTAGGAGGGACTGGGCCGAT-CCTCGACTTGTACATTCTGCCTCT-CTAGCCAACTGAGTGC
131 CACGCAGGGGGGAC-GGGCCGATCCCT-GACTTGTGCATTCTGCCTCTCCGA-CCGACTGAGCGC
* * * * * *
25256195 CTGGACGCCCTTTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCT
193 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCT
25256254 CAGCCGGATC
Statistics
Matches: 536, Mismatches: 89, Indels: 31
0.82 0.14 0.05
Matches are distributed among these distances:
379 6 0.01
380 138 0.26
389 1 0.00
392 95 0.18
393 190 0.35
394 106 0.20
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (390 bp):
CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCATACGAGTTCATTCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGTAGCAGGATCGACAG
CACGCAGGGGGGACGGGCCGATCCCTGACTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTACAGAGTTC
ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAAGACCAGTAGAAAGATCGACAG
CACGCAAGGAGGGACCGAGCCGATCCCCACTTGCGCATTCTACCTCTCCGACCAACCTCTCCGGC
Found at i:25256236 original size:380 final size:384
Alignment explanation
Indices: 25255440--25256253 Score: 899
Period size: 380 Copynumber: 2.1 Consensus size: 384
25255430 TCGTTTTGTG
* * * *
25255440 GGTTGG-TTAGGCATATGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTGCTAGTCTAAGA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTACAGAGTTCATTCCCAGTCTAAGA
* * * * * * *
25255504 TTGGACCGGACCGAGGGTTGTGGCAGCAGGACCAGTAGCAGGATCGGCAGGACGCAAGGAGGGAC
66 TCGGACCGGACCGAGGGTTGTGACAGCAAGACCAGTAGAAAGATCGACAGCACGCAAGGAGGGAC
** * * **
25255569 CGAGCCGATCCCTGGCTTGCGTATTCTACCTCTCCGATCAACCTCTCCGGCCGGCTGAGTGCCCG
131 CGAGCCGATCCCTCACTTGCGCATTCTACCTCTCCGACCAACCTCTCCGGCCGGCTGAACGCCCG
** *
25255634 CACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
196 CACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATAC-G-G---
* ** *
25255699 ATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAGGATCAACAGCACGCAGGGGGG
256 -----CAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGCAGGATCAACAGCACGCAGGAGGG
* * * * *
25255764 ATCAGGTCGATCCCTGACTTATGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTT
316 ATCAGGCCGATCCCTGACTTATACATTCTGCCTCTCAGACCAACTGAGCGCCCGCACGCCCATTT
*
25255829 CATG
381 CATA
*
25255833 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTACAGAGTTCATTCCCAGTCTAAGA
* * *
25255898 TCGGACCGGATCGAGGGTTGTGATAGCAAGACCAGTAGAAAGATCGACAGCATGC-AGG-GGGAA
66 TCGGACCGGACCGAGGGTTGTGACAGCAAGACCAGTAGAAAGATCGACAGCACGCAAGGAGGG-A
* * * * * * *
25255961 CTGGGTCGATCCC-CACTTTCGCATTCTACCTCTCCGACCAGCCTCTCCGGCCTGTTGAACGCCC
130 CCGAGCCGATCCCTCACTTGCGCATTCTACCTCTCCGACCAACCTCTCCGGCCGGCTGAACGCCC
*** ** * *
25256025 GTGTGCTTGTTTCGTGGGTTGACTTAGGTATACAGAGTTCATCCCCAATCTAAGCATAC-G-AGT
195 GCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGGCAGT
** * * *
25256088 CTAAGATCAAACTGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGTAGGAGGGA-CTGGGCC
260 CTAAGATCAAACCAGACCGAGGGTTGCGACAGCAGGATCAACAGCACGCAGGAGGGATC-AGGCC
* * * * * *
25256152 GAT-CCTCGACTTGTACATTCTGCCTCTCTAG-CCAACTGAGTGCCTGGACGCCCTTTTCGTA
324 GATCCCT-GACTTATACATTCTGCCTCTC-AGACCAACTGAGCGCCCGCACGCCCATTTCATA
*
25256213 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCT
1 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCT
25256254 CAGCCGGATC
Statistics
Matches: 356, Mismatches: 60, Indels: 23
0.81 0.14 0.05
Matches are distributed among these distances:
379 4 0.01
380 139 0.39
381 1 0.00
389 1 0.00
392 93 0.26
393 20 0.06
394 98 0.28
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (384 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTACAGAGTTCATTCCCAGTCTAAGA
TCGGACCGGACCGAGGGTTGTGACAGCAAGACCAGTAGAAAGATCGACAGCACGCAAGGAGGGAC
CGAGCCGATCCCTCACTTGCGCATTCTACCTCTCCGACCAACCTCTCCGGCCGGCTGAACGCCCG
CACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGGCAGTC
TAAGATCAAACCAGACCGAGGGTTGCGACAGCAGGATCAACAGCACGCAGGAGGGATCAGGCCGA
TCCCTGACTTATACATTCTGCCTCTCAGACCAACTGAGCGCCCGCACGCCCATTTCATA
Found at i:25257873 original size:158 final size:156
Alignment explanation
Indices: 25257394--25257877 Score: 460
Period size: 158 Copynumber: 3.1 Consensus size: 156
25257384 CCTAGTCTAA
* * * *
25257394 GCATATGGAGTTCATTCCCA-TCTAAGATCAGACCGGATCGAGGGTTACGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGATA
* * * * * **
25257458 GCACGCAGGGGGGACCGAGCCGATCCC-AAGCTTGCACATTCTACCTCTCCAGATGGCTGAGTGC
65 GCACGCAGGGGGGACCGAACCGATCCCTGA-CTTGCACATTATGCCTCTCC-GATGGCTAAGCAC
* * *
25257522 CCGCACGCCCATTTGGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * *
25257551 GCATA-GGTAGTTCATTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGTAGCGGGA-CTG
1 GCATACGG-AGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATC-G
* * ** * *
25257613 ACAGCACGCAGAGGGGGACC-AGACCGAT-CCTCGGCTTGTGCATTATGCCTCTCCGATTGACTC
62 ATAGCACGCAG-GGGGGACCGA-ACCGATCCCT-GACTTGCACATTATGCCTCTCCGA-TGGCTA
* * * * * *
25257676 AGCACCTGAATGCTCGTTTCATGGGTTGACTTCG
123 AGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
25257710 GCATACGGAGTTCATTCGTAGTCTAAGATTAGACCAGACCGAGGGTTGCGGTAGTAGGATCGATA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGATA
* * *
25257775 GCACGCAGGGGGGACCGAACCGGTCCCTGACTTGCACATTTTGCCTCTCCGACCGGCTAAGCACC
65 GCACGCAGGGGGGACCGAACCGATCCCTGACTTGCACATTATGCCTCTCCGA-TGGCTAAGCACC
25257840 CGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
25257868 ACATACGGAG
1 GCATACGGAG
25257878 CTCAACCCCA
Statistics
Matches: 258, Mismatches: 53, Indels: 31
0.75 0.15 0.09
Matches are distributed among these distances:
156 5 0.02
157 14 0.05
158 118 0.46
159 117 0.45
160 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGATAG
CACGCAGGGGGGACCGAACCGATCCCTGACTTGCACATTATGCCTCTCCGATGGCTAAGCACCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:25258350 original size:26 final size:26
Alignment explanation
Indices: 25258319--25258371 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25258309 GTTGGCTTAG
*
25258319 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
25258345 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
25258371 G
1 G
25258372 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:25258734 original size:26 final size:26
Alignment explanation
Indices: 25258700--25258750 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
25258690 TTGACTTAGG
25258700 CATACGGAGTTCATCCCCAATCTAAA
1 CATACGGAGTTCATCCCCAATCTAAA
* * *
25258726 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAATCTAA
25258751 GATTGGATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAA
Found at i:25259445 original size:24 final size:26
Alignment explanation
Indices: 25259408--25259458 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
25259398 GTTGACTTAG
25259408 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
25259433 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
25259458 G
1 G
25259459 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:25259779 original size:26 final size:25
Alignment explanation
Indices: 25259743--25259794 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
25259733 GTTGGCTTAG
*
25259743 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCA-GTCTAA
25259769 GCATACGGAGTTCATCCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
25259794 G
1 G
25259795 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:25260281 original size:26 final size:26
Alignment explanation
Indices: 25260231--25260283 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25260221 GTTGACTTAG
*
25260231 GCATATGAAATTCATCCCCAGTCTAA
1 GCATATGAAATTCATCCCCAATCTAA
* **
25260257 GCATATGAAGTTCATTTCCAATCTAA
1 GCATATGAAATTCATCCCCAATCTAA
25260283 G
1 G
25260284 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (26 bp):
GCATATGAAATTCATCCCCAATCTAA
Found at i:25260537 original size:134 final size:134
Alignment explanation
Indices: 25260298--25260563 Score: 317
Period size: 134 Copynumber: 2.0 Consensus size: 134
25260288 GACCGGACCG
* * * * *
25260298 AGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTC
1 AGGGTTGCGGCAGCAGGACCAACAGCACGCAGGGGGGATCGGGCCGATCCCTGACTTGCACATTA
* * * *
25260363 TGCTTCTCTGACCGACTGAGTGCCCGCACGTCTGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTC
66 TGCTTCTCCGACCGACTCAGCGCCCGCACGTCTGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
25260427 ATCC
131 ATCC
* * *
25260431 AGGGTTGTGGCAGCGGGACCAACAGCACGCAGAGGGGGA-CTGGGCCGATCCCTGGCTTGCACAT
1 AGGGTTGCGGCAGCAGGACCAACAGCACGCAG-GGGGGATC-GGGCCGATCCCTGACTTGCACAT
* *
25260495 TATGCCTT-TCCGGCC-AGGTCAGCGCCCGCAC-TCTCGTTTCGTGGGTTGACTTAGGCATACGG
64 TATG-CTTCTCCGACCGA-CTCAGCGCCCGCACGTCT-GTTTCGTGGGTTGACTTAGGCATACGG
*
25260557 GGTTCAT
126 AGTTCAT
25260564 TCCAATCTAA
Statistics
Matches: 112, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
133 33 0.29
134 68 0.61
135 11 0.10
ACGTcount: A:0.16, C:0.27, G:0.34, T:0.23
Consensus pattern (134 bp):
AGGGTTGCGGCAGCAGGACCAACAGCACGCAGGGGGGATCGGGCCGATCCCTGACTTGCACATTA
TGCTTCTCCGACCGACTCAGCGCCCGCACGTCTGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATCC
Found at i:25261585 original size:26 final size:26
Alignment explanation
Indices: 25261533--25261585 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
25261523 ATTGGCTTAG
* * *
25261533 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACAGAGTTCATTCCATATCTAA
25261559 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
25261585 G
1 G
25261586 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:25262056 original size:158 final size:156
Alignment explanation
Indices: 25261881--25262308 Score: 478
Period size: 158 Copynumber: 2.7 Consensus size: 156
25261871 CGCACGTCCG
* * * * * ** *
25261881 TTTCATGGGTTGGCTTAGGTAGAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGAACTGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGATC-AGCCGAACTGAGGGTT
* * ** * * * * * *
25261946 GTGGCAGTGGGACCGACAGCACGCAAGGGGGATCGGGCCGATCTCTGGCTTGCGCATTATAACTC
64 GCGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTACGCATTATAACTC
25262011 TCCGGTCGGGTCAATGCCCGTACGCTCA
129 TCCGGTCGGGTCAATGCCCGTACGCTCA
* *
25262039 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGATC-AGCCGAACTGAGGGTT
* * * * * * * *
25262104 ACGATAGCAGGATCGACAGCACACAGGGGGGATCGAGTCGGTCCCCGACTTACGCATTATAATTT
64 GCGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTACGCATTATAACTC
** * *
25262169 TTTGGTCGGGTCAATGCCCTTACGCTCG
129 TCCGGTCGGGTCAATGCCCGTACGCTCA
* *
25262197 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCTCAGTCTAAGATCAGACCGGACTGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CAGTCTAAGATCAG-CCGAACTGAGGGTT
* *
25262262 GCGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCAATCCCCG
64 GCGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCG
25262309 GCTTGTGCAT
Statistics
Matches: 224, Mismatches: 43, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
157 2 0.01
158 219 0.98
159 3 0.01
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (156 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGCCGAACTGAGGGTTGC
GGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTACGCATTATAACTCTC
CGGTCGGGTCAATGCCCGTACGCTCA
Found at i:25262319 original size:158 final size:158
Alignment explanation
Indices: 25261934--25262319 Score: 504
Period size: 158 Copynumber: 2.4 Consensus size: 158
25261924 AGCCCTAGCT
* * ** * * * * *
25261934 GAACTGAGGGTTGTGGCAGTGGGACCGACAGCACGCAAGGGGGATCGGGCCGATCTCTGGCTTGC
1 GAACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGC
*
25261999 GCATTATAACTCTCCGGTCGGGTCAATGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACG
66 GCATTATAACTCTCCGGTCGGGTCAATGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACA
25262064 GAGTTCATTCCCAGTCTAAGATCGAACC
131 GAGTTCATTCCCAGTCTAAGATCGAACC
* * * * * * * *
25262092 GAACCGAGGGTTACGATAGCAGGATCGACAGCACACAGGGGGGATCGAGTCGGTCCCCGACTTAC
1 GAACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGC
* * ** * *
25262157 GCATTATAATTTTTTGGTCGGGTCAATGCCCTTACGCTCGTTTCGTGGGTTGACTTAGGCATACA
66 GCATTATAACTCTCCGGTCGGGTCAATGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACA
*
25262222 GAGTTCATTCTCAGTCTAAGATC-AGACC
131 GAGTTCATTCCCAGTCTAAGATCGA-ACC
* * *
25262250 GGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCAATCCCCGGCTTGT
1 GAACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGC
25262315 GCATT
66 GCATT
25262320 TTGCCTCTTC
Statistics
Matches: 191, Mismatches: 36, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
157 1 0.01
158 190 0.99
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (158 bp):
GAACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGC
GCATTATAACTCTCCGGTCGGGTCAATGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACA
GAGTTCATTCCCAGTCTAAGATCGAACC
Found at i:25262614 original size:26 final size:26
Alignment explanation
Indices: 25262564--25262616 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25262554 GTTGGCTTAG
* *
25262564 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAAAGTTCATTCCATATCTAA
25262590 GCATACAAAGTTCATTCCCA-ATCTAA
1 GCATACAAAGTTCATT-CCATATCTAA
25262616 G
1 G
25262617 ATAAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCATATCTAA
Found at i:25262932 original size:171 final size:170
Alignment explanation
Indices: 25262590--25262958 Score: 413
Period size: 171 Copynumber: 2.2 Consensus size: 170
25262580 CCATGTCTAA
* * *** * * *
25262590 GCATACAAAGTTCATTCCCAATCTAAG-ATAAGACCAGACCGAGGGTTGTGGTAGCAGGACCAGC
1 GCATACAAAGTTCATCCCCAGTCTAAGCCCCA-ACCGGACTGAGGGTTGTGGCAGCAGGACCAGC
* ** * *
25262654 AGCAGGATCGACAGCATGCAGAGGGGATCGAGTCGATCCCTGGCTTGCGTATTCTGCCTCTCCGG
65 AGCAGGATCGACAGCACGCAGAGGGGATCGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGA
* * * * * *
25262719 TCGGCTGAGCACCCGCACGCTCCTTTCGTGGGTTGGCTTAG
130 CCGACTGAGCACCCACACGCTCATTTCATGGGTTGACTTAG
* *
25262760 GCATACAAAGTTCAT-TCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGTAGGACC-GA
1 GCATACAAAGTTCATCCCCA-GTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCAGGACCAG-
** * *
25262823 CAGTGGGATCGACAGCACGCAGACGGGGATCG-GGCTGATCCCCAGCTTGCGCATTGTGCCTCTC
64 CAGCAGGATCGACAGCACGCAGA-GGGGATCGAGTC-GATCCCCAGCTTGCGCATTCTGCCTCTC
* *
25262887 CGACCGACTGAGCGCCTACACGCTCATTTCATGGGTTGACTTAG
127 CGACCGACTGAGCACCCACACGCTCATTTCATGGGTTGACTTAG
*
25262931 GCATACGAAGTTCATCCCCAGTCTAAGC
1 GCATACAAAGTTCATCCCCAGTCTAAGC
25262959 ATACGTAGTT
Statistics
Matches: 165, Mismatches: 28, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
169 4 0.02
170 68 0.41
171 90 0.55
172 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (170 bp):
GCATACAAAGTTCATCCCCAGTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCAGGACCAGCA
GCAGGATCGACAGCACGCAGAGGGGATCGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGAC
CGACTGAGCACCCACACGCTCATTTCATGGGTTGACTTAG
Found at i:25262961 original size:26 final size:26
Alignment explanation
Indices: 25262931--25262983 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25262921 GTTGACTTAG
25262931 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
25262957 GCATACGTAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
25262983 G
1 G
25262984 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:25266793 original size:159 final size:159
Alignment explanation
Indices: 25266412--25266795 Score: 411
Period size: 159 Copynumber: 2.4 Consensus size: 159
25266402 CGCATGCCCA
*
25266412 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* * *
25266477 GTGGCAACAGGACCAACAGCACGGAGAGGGGGACCGGGCCGATCTTCGACTTGCGCATTACACCT
66 GCGGCAACAGGACCAACAGCACGCAGAGGGGGACCAGGCCGATCTTCGACTTGCGCATTACACCT
* * * *
25266542 CTTCGGTCGTCTCAGTGACTGCACGCTCG
131 CTCCGGCCGTCTCAGTCACCGCACGCTCG
* * * * * **** *
25266571 TTTCATGGGTTGACTTATGCATACAGAGTTAATTCCCA-GTCTAAG-ATGGGACCAGACCAAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGG
* * * * * * *
25266634 TTGCGGCAGCAGGATCAGCAGCACGCAGGGGGGGACCAGGTCGAT-TCTCGGCTTGCTCATT-CT
64 TTGCGGCAACAGGACCAACAGCACGCAGAGGGGGACCAGGCCGATCT-TCGACTTGCGCATTAC-
* * *
25266697 GCCTCTCCGGCCAG-CTGAG-CACCCGTACGCTCG
127 ACCTCTCCGGCC-GTCTCAGTCA-CCGCACGCTCG
*
25266730 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
25266795 G
66 G
25266796 NNNNNNNNNN
Statistics
Matches: 178, Mismatches: 39, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
158 7 0.04
159 166 0.93
160 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
GCGGCAACAGGACCAACAGCACGCAGAGGGGGACCAGGCCGATCTTCGACTTGCGCATTACACCT
CTCCGGCCGTCTCAGTCACCGCACGCTCG
Found at i:25268350 original size:11 final size:11
Alignment explanation
Indices: 25268334--25268362 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
25268324 CCCGGGGCAC
25268334 CATCGTCGGAG
1 CATCGTCGGAG
25268345 CATCGTCGGAG
1 CATCGTCGGAG
25268356 CATCGTC
1 CATCGTC
25268363 AAAAAGCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.31, G:0.31, T:0.21
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:25268979 original size:26 final size:26
Alignment explanation
Indices: 25268950--25268999 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
25268940 ACTTACGCAC
25268950 TACGGAGTTCATCCCCAATCTAAGCA
1 TACGGAGTTCATCCCCAATCTAAGCA
* *
25268976 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAATCTAAG
25269000 ATCAGATCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAATCTAAGCA
Found at i:25269692 original size:26 final size:24
Alignment explanation
Indices: 25269656--25269706 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 24
25269646 TTGGGCTTAG
*
25269656 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAG-TCATTCCA-GTCTAA
25269682 GCATACAGAGTCATTCCAGTCTAA
1 GCATACAGAGTCATTCCAGTCTAA
25269706 G
1 G
25269707 ATCGGTCTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 7 0.29
25 8 0.33
26 9 0.38
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (24 bp):
GCATACAGAGTCATTCCAGTCTAA
Found at i:25269863 original size:193 final size:197
Alignment explanation
Indices: 25269434--25269876 Score: 481
Period size: 197 Copynumber: 2.3 Consensus size: 197
25269424 GCCCGCACGT
* * * * **
25269434 ACGCTCGTTTTGTGGGTTGGCTTAGGCATACGAATTTCATTCCATG-TAAGCGTACGAAGTTTTT
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTAAGCATACGAAGTCATT
* * * *
25269498 CCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGGACCAACAGTAGGATCGACATCA
66 CCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGGACCAACAGCAGGATCGACAGCA
* * * * * **
25269563 TACAGTGGGGGATCGGGGCGATCCCCGGCTTGTGCATTCTGCCTCTCTAGTCGGGCTGAGTGCCC
131 CACAGTGGGGGAGCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTAGTCGCGCTGAGCACCC
25269628 AC
196 AC
*
25269630 ACACTCGTTTCGTGGGTTGGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC-AGAGTC
1 ACGCTCGTTTCGTGGGTT-GGCTTAGGCATACGGAGTTCATTCCATGT-TAAGCATACGA-AGTC
* * ** * *
25269694 ATT-CCAGTCTAAGATCGGTCTGGACCGAGGGTTACGGTAGTA-GGA-CAAGCAGCAGGATCTAC
63 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGGACCAA-CAGCAGGATCGAC
* ** *
25269756 AGCACGCAG-GGGGG-GCAGGCCGATCCTTGGCTTGTGCATTCTGCCTCT-TCGGT-GCGCTGAG
127 AGCACACAGTGGGGGAGCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCT-AGTCGCGCTGAG
*
25269817 CACCCGC
191 CACCCAC
* * *
25269824 ACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTACATGTATAAGC
1 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT-TAAGC
25269877 CCCAGCCAGA
Statistics
Matches: 207, Mismatches: 34, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
193 32 0.15
194 28 0.14
195 31 0.15
196 24 0.12
197 46 0.22
198 33 0.16
199 13 0.06
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.26
Consensus pattern (197 bp):
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTAAGCATACGAAGTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGGACCAACAGCAGGATCGACAGCA
CACAGTGGGGGAGCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTAGTCGCGCTGAGCACCC
AC
Found at i:25270034 original size:26 final size:26
Alignment explanation
Indices: 25270005--25270055 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
25269995 GTTGACTTAG
*
25270005 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
** *
25270031 GCATACGGAGTTCATTCCCAATCTA
1 GCATACAAAGTTCATCCCCAATCTA
25270056 GGATTGGATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:25270710 original size:26 final size:26
Alignment explanation
Indices: 25270674--25270725 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
25270664 CGGTCTGATG
*
25270674 TTAGACTGGGAATGCACTTCATATGC
1 TTAGACTGGGAATGAACTTCATATGC
*
25270700 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTTCATATGC
25270726 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTTCATATGC
Found at i:25271053 original size:26 final size:26
Alignment explanation
Indices: 25271017--25271066 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
25271007 CGGTCTGATG
* *
25271017 TTAGACTGGGAATGCACTTCATATTC
1 TTAGACTGGGAATGAACTCCATATTC
25271043 TTAGACTGGGAATGAACTCCATAT
1 TTAGACTGGGAATGAACTCCATAT
25271067 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATTC
Found at i:25271122 original size:343 final size:342
Alignment explanation
Indices: 25270483--25271671 Score: 1460
Period size: 343 Copynumber: 3.5 Consensus size: 342
25270473 AAGTTGCCGG
* * * *
25270483 TCCCGTTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
1 TCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * *
25270548 CAACCCATGAAACAGACGTGTGGGTGCTCAGTCGGTCGGAGAGGAAAAAATGCACAAGCC-GGGA
66 CAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGGTCGGAGAGG-AAGAATGCGCAAGCCGGGGA
* *
25270612 TCGGCCCAATCCCTCCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCAATTCGGTCTGATGTTA
130 TCGGCCCGATCCCTCCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGATTCGGTCTGATGTTA
25270677 GACTGGGAATGCACTTCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAA
195 GACTGGGAATGCACTTCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAA
25270742 AATGAGTATGGGGGTGCCCAGCCGGCCTGAAAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTC
260 AATGAGTATGGGGGTGCCCAGCCGGCCTGAAAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTC
25270807 CCCCGTAGCTTTTTGTCTG-
325 CCCCGTAGC-TTTTGTC-GA
* * *
25270826 TCCCGCTGCCACAACCCTCGGTCCGATTGGGGCTTATACATGTAATGAACTCCCTATGCCTAAGC
1 TCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
25270891 CAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGGTCGGAGAGGAAGAATGCGCAAGCCGGGGAT
66 CAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGGTCGGAGAGGAAGAATGCGCAAGCCGGGGAT
*
25270956 CGGCCCGATCCCTCTTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGATTCGGTCTGATGTTAG
131 CGGCCCGATCCCTCCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGATTCGGTCTGATGTTAG
* * * **
25271021 ACTGGGAATGCACTTCATATTCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAA
196 ACTGGGAATGCACTTCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAA
** * * * *** *** * * * * *
25271086 ACAAGTGTGCGGGCGTTGAGTTTGCCGGAGAGGCATAACGCGTAA-CCGGGGATC-GATCCGGTC
261 ATGAGTATGGGGGTGCCCAGCCGGCCTGAAAGGCATAATGCGCAAGCCGGGGATCAG-CCCGGTC
* **
25271149 CCTTTC-T-GCATGATGTCGA
325 CC--CCGTAGC-TTTTGTCGA
** * * * *
25271168 TCCCATTGCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAACGAACTCACTATGCCTACGC
1 TCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * *
25271233 CAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGTAGAATGCGCAAGCCGAGGAT
66 CAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGGTCGGAGAGGAAGAATGCGCAAGCCGGGGAT
* * * * * ** ** * * * * **
25271298 CGACCTGGTCCC-CCTGCGTGTTGTCGATCCTGCTGTCACAACCCTCGGTCCGATCCGATCCTAG
131 CGGCCCGATCCCTCCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGATTCGGTCTGATGTTAG
* * *
25271362 ACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACAAA
196 ACTGGGAATGCACTTCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAA
25271427 ATGAGTATGGGGGTGCCCAGCCGGCCTGAAAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCC
261 ATGAGTATGGGGGTGCCCAGCCGGCCTGAAAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCC
25271492 CCCGTAGCTTTTGTCGA
326 CCCGTAGCTTTTGTCGA
* * * *
25271509 TCTCGCTGCCACAACCCTCGGT-CGACT-AGGCTTATACATGTAATGAACTCCCTATGCCTAAGC
1 TCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * * * * **
25271572 CAACCCATGAAACGAGCGTGCGGGTGCTCAGCCCGCCGAAAAGGCAGAATGCGTAAGCCAAGGAT
66 CAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGGTCGGAGAGGAAGAATGCGCAAGCCGGGGAT
* * * * **
25271637 CGGCCTGGTCCCCCCTACGTGCTGTAGATCCTGCT
131 CGGCCCGATCCCTCCTGCGTGCTGCCGATCCTGCT
25271672 GCTTGTCCTA
Statistics
Matches: 715, Mismatches: 121, Indels: 23
0.83 0.14 0.03
Matches are distributed among these distances:
339 96 0.13
340 25 0.03
341 154 0.22
342 181 0.25
343 258 0.36
344 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (342 bp):
TCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
CAACCCATGAAACGGGCGTGCGGGTGCTCAGTCGGTCGGAGAGGAAGAATGCGCAAGCCGGGGAT
CGGCCCGATCCCTCCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCGATTCGGTCTGATGTTAG
ACTGGGAATGCACTTCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAA
ATGAGTATGGGGGTGCCCAGCCGGCCTGAAAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCC
CCCGTAGCTTTTGTCGA
Found at i:25271802 original size:352 final size:354
Alignment explanation
Indices: 25271337--25272005 Score: 733
Period size: 352 Copynumber: 1.9 Consensus size: 354
25271327 CTGCTGTCAC
* **
25271337 AACCCTCGGTCCGATCCGATCCTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACT
1 AACCCTCGGTCAGATCCGATCCTAGACTGGGAATGAACTCCATATGCTTAGACTGGAAATGAACT
* * * * * ** *
25271402 TCGTATGCCTAAGTCAACCCACAAAATGAGTATGGGGGTGCCCAGCCGGCCT-GAAAGGCATAAT
66 CCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACCCAGCCGG-CTGGAAAGGCAGAAT
* * ** * *
25271466 GCGCAAGCCGGGGATCAGCCCGGT-CCCCCGTAGCTTTTGTCGATCTCGCTGCCACAACCCTCGG
130 GCACAAGCCGGGGATCAGCCCGATCCCCCCGTAGCTGCTATCGATCTCGCTACCACAACCCTCGG
* * ** *
25271530 TC-GACT-AGGCTTATACAT-GTAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTG
195 TCGGACTGA-GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATG
** *
25271592 CGGGTGCTCAGCCCGCCGAAAAGGCAGAATGCGTAAGCCAAGGATCGGC-CTGGTCCCCCCTACG
258 CGGGTGCTCAGCCAACCGAAAAGGCAGAATGCGCAAGCCAAGGATCGGCTC-GGTCCCCCCTACG
25271656 TGCTGTAGATCCTGCTGCTTGTCCTACTACCGT
322 TGCTGTAGATCCTGCTGCTTGTCCTACTACCGT
* * *
25271689 AACCCTCGGTCTAGA-CCGATCTTAGACTGGGAATGAATTCCGTATGCTTAGACAT-GAAATGAA
1 AACCCTCGGTC-AGATCCGATCCTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGAAATGAA
*** * * * * * *
25271752 CTCCGTATGCCTAAGCCAATTGACGAAACGAGCGTGCGGGCACTCAGCCGGTTGGAGAGGTAGAA
64 CTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACCCAGCCGGCTGGAAAGGCAGAA
* ** * * * * * **
25271817 TGTACAAGTTGGGGATCGGCCCGATCCCCCCTTGGGTGCTATCGATCTTGCTACCGTAACCCTCG
129 TGCACAAGCCGGGGATCAGCCCGATCCCCCCGTAGCTGCTATCGATCTCGCTACCACAACCCTCG
* * * * *
25271882 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACAAAACGAGCATG
194 GTC-GGACTGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATG
* *
25271947 CGGGTGCTGAGCCAACCGAAAAGGCATAATGCGCAAGCCAAGGATCGGCTCGGTCCCCC
258 CGGGTGCTCAGCCAACCGAAAAGGCAGAATGCGCAAGCCAAGGATCGGCTCGGTCCCCC
25272006 TCTGCATGCT
Statistics
Matches: 254, Mismatches: 54, Indels: 15
0.79 0.17 0.05
Matches are distributed among these distances:
351 1 0.00
352 117 0.46
353 35 0.14
354 1 0.00
355 98 0.39
356 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (354 bp):
AACCCTCGGTCAGATCCGATCCTAGACTGGGAATGAACTCCATATGCTTAGACTGGAAATGAACT
CCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACCCAGCCGGCTGGAAAGGCAGAATG
CACAAGCCGGGGATCAGCCCGATCCCCCCGTAGCTGCTATCGATCTCGCTACCACAACCCTCGGT
CGGACTGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGCGG
GTGCTCAGCCAACCGAAAAGGCAGAATGCGCAAGCCAAGGATCGGCTCGGTCCCCCCTACGTGCT
GTAGATCCTGCTGCTTGTCCTACTACCGT
Found at i:25272537 original size:158 final size:159
Alignment explanation
Indices: 25272108--25272537 Score: 405
Period size: 158 Copynumber: 2.7 Consensus size: 159
25272098 TGGACGTCGA
* * * * * ** *
25272108 AGAGGCAGAATGCGTAAGCCAGGGATTGACCCAATCCCCACCTACGTGCTGTCGATCCTGCTACC
1 AGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGATCCCCACCTACGTGCTACCGATCCTGCTGCC
* *
25272173 ACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGGACTCTGTATGCCTAAGTCAACCCATGA
66 ACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCCATGA
* * * * * * *
25272238 AACGAGTGTACTGGCGTTGAGCCTATCAG
131 AACGAGCGTACGGGCGCTCAACCGACCAG
* * * * * ** ** * * * * *
25272267 AGAGGCATAATACGCAAGCCGAGGATCAGCCCGGGCCCCTTCTACCTACTACCGGTCCCGTTGCC
1 AGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGATCCCCACCTACGTGCTACCGATCCTGCTGCC
* *** * * * **
25272332 ACAACCTTCGGTCCGG-CTGGGGTTACACAAGGAATGAATTCCCTATGCCTAAGCCAACCCATGA
66 ACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCCATGA
* *
25272396 AACGGGCGTGCGGGCGCTCAACCGACCAG
131 AACGAGCGTACGGGCGCTCAACCGACCAG
* * *
25272425 AGAGGTAGAATGCGAAAGTCGGGGATCGGCCCGATCCCC-CCTGCGTGCTACCGATCCTGCTGCC
1 AGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGATCCCCACCTACGTGCTACCGATCCTGCTGCC
* * * *
25272489 ACAACCCTCGATCTGGTTTGATCTTAGACTGGGAATGAACTCTGTATGC
66 ACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGC
25272538 TTAGACGGGG
Statistics
Matches: 200, Mismatches: 70, Indels: 3
0.73 0.26 0.01
Matches are distributed among these distances:
157 31 0.16
158 110 0.55
159 59 0.29
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
AGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGATCCCCACCTACGTGCTACCGATCCTGCTGCC
ACAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCCATGA
AACGAGCGTACGGGCGCTCAACCGACCAG
Found at i:25272540 original size:26 final size:26
Alignment explanation
Indices: 25272511--25272563 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25272501 CTGGTTTGAT
* *
25272511 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACGGGGAACGAACTCTGTATG
*
25272537 CTTAGACGGGGGACGAACTCTGTATG
1 CTTAGACGGGGAACGAACTCTGTATG
25272563 C
1 C
25272564 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAACGAACTCTGTATG
Found at i:25273324 original size:159 final size:158
Alignment explanation
Indices: 25272904--25273410 Score: 382
Period size: 159 Copynumber: 3.2 Consensus size: 158
25272894 AACTCCCTAT
* * *
25272904 GCTTACACATGGAATGAAATTCGTATGCCTAAGCCAACCCACAAAATGAGCATACGTGCGGGCGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAG--T--GTGCGGGCGC
* * * * * *
25272969 TCAACCGGACGGAAAGGTAGAATGCGTAAGACGGGGATCGGCCCGGTTCCCCCTACGTGCTGTCG
62 TCAGCCGGACGGAAAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTATCG
* *
25273034 ATCTTGCGGCCGCAACCCTCAGTCCGATCTGA
127 ATCTCGCGGCCACAACCCTCAGTCCGATCTGA
* * ** * ** * * * * *
25273066 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAATTCAACCAATGAAACGAGCGTCCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGGCGCTCA
* * * ** *
25273130 GCC-GATCGAAAAGGCATAATGCGCAAGCC-AGGGATCGGCCCGGTCCCCCTCTGTGTGTTATCG
65 GCCGGA-CGGAAAGGCAGAATGCGTAAGCCGA-GGATCGGCCCGGTCCCCC-CTACGTGCTATCG
* * *
25273193 ATCTCGCTGCCACAGCCCTC-GATCCGAT-TGGC
127 ATCTCGCGGCCACAACCCTCAG-TCCGATCT-GA
*
25273225 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATTG-GTGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAA-TGAGTGTGCGGGCGCTCA
* * * * * * ** * * *
25273289 GCCGGCCGGAGAGGCAGAATCCGTAAGCCGAGGATCGACTCGATCCCTTCTGCATGCTGTCGAT-
65 GCCGGACGGAAAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTATCGATC
* * * * * *
25273353 TCTGCTGTCGCAACCCTCAATTCGGTCTGA
130 TC-GCGGCCACAACCCTCAGTCCGATCTGA
*
25273383 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
25273411 TTAGACTGGG
Statistics
Matches: 262, Mismatches: 69, Indels: 32
0.72 0.19 0.09
Matches are distributed among these distances:
157 5 0.02
158 101 0.39
159 114 0.44
160 4 0.02
161 1 0.00
162 37 0.14
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGGCGCTCAG
CCGGACGGAAAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCT
CGCGGCCACAACCCTCAGTCCGATCTGA
Found at i:25273420 original size:26 final size:26
Alignment explanation
Indices: 25273384--25273436 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25273374 TCGGTCTGAT
25273384 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25273410 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25273436 C
1 C
25273437 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25274159 original size:25 final size:26
Alignment explanation
Indices: 25274122--25274173 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
25274112 GGCTCAAAAT
25274122 CTTAGACTGGGAATGAACT-CGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25274147 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25274173 C
1 C
25274174 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25274482 original size:159 final size:158
Alignment explanation
Indices: 25274146--25274550 Score: 442
Period size: 159 Copynumber: 2.6 Consensus size: 158
25274136 GAACTCGTAT
* * ** *
25274146 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAATGAGCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * **
25274211 CCGGCCGGAGAGGCAGAATGC-CAAGCCGGGGATCGGCCCGATCCTCCCCTATGTGCTGTCGATC
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGCCCCGATCCTCCCCTATGTGCTACCGATC
* *
25274275 CTGCTGCCACAACCCTCGGTCCGGTCCGA
131 CCGCTGCCACAACCCTCAGTCC-GTCCGA
* * * * *
25274304 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * *
25274368 GCCGGTCGAAGAGGCATAATGCGCAAGTCGAGGATCAGCCCCG-TCC-CCCTCTGTGTGCTACCG
65 GCCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATC-GCCCCGATCCTCCC-CTATGTGCTACCG
* * * * *
25274431 ATCCCGTTGCCATAACCCTCAGTTC-TACTGGG
128 ATCCCGCTGCCACAACCCTCAGTCCGT-C-CGA
* * *
25274463 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* *
25274528 CCGGCCAAAGAGGTAGAATGCGC
66 CCGGCCGAAGAGGCAGAATGCGC
25274551 CAGTGAAGGA
Statistics
Matches: 202, Mismatches: 38, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 75 0.37
159 119 0.59
160 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGCCCCGATCCTCCCCTATGTGCTACCGATC
CCGCTGCCACAACCCTCAGTCCGTCCGA
Found at i:25274954 original size:354 final size:343
Alignment explanation
Indices: 25274305--25274954 Score: 775
Period size: 354 Copynumber: 1.9 Consensus size: 343
25274295 CCGGTCCGAT
* * * *
25274305 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTACGGCCGCTCAGC
* * * *
25274370 CGGTCGAAGAGGCATAATGCGCAAGTCGAGGATCAGCCCCGTCCCCCTCTGTGTGCTACCGATCC
66 CAGCCGAAGAGGCATAATGCGCAAGCCGAGGATCAACCCCGTCCCCCTCTGTGTGCTACCGATCC
* * * * * * *
25274435 CGTTGCCATAACCCTCAGTTCTACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCCCAGTCCGACTGAGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAA
* * * * *
25274500 CCCACGAAACGGGCGTACGGGTGCTCAGCCGGCCAAAGAGGTAGAATGCGCCAGTGAAGGATCGG
196 CCCACGAAACGGGCGTACGGGTGCTCAGCCGACCAAAGAGGCAGAATGCGCAAGCGAAGGATCGA
** *
25274565 CTTGGTCCCCCCTGCGTGCTGCCTATCCTGCTACTGCAACCCTCGGTCCGGTCTAATCTCAGATT
261 CCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCTAATCTCAGATT
25274630 GGGAATGAACTATGTATG
326 GGGAATGAACTATGTATG
* * *
25274648 CTTAGACTGGG-ATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGCCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTACGGCCGCTCAGC
* * * * *
25274712 CAGCCGGAGAGGCGTAATGCGCAAGCCGGGGATCAACTCGGTCCCCTTTTGCATGCTGTCGATCC
66 CAGCCGAAGAGGCATAATGCGCAAGCCGAGGATCAACCCCGTCCCC-----C-T-CTGT-G-T--
* * *
25274777 CGCTACCGGTCCTGCTGCCACAACCCCCAGTCCGACTGAGGCTTAGACATGGAATGAACTCCGTA
120 -GCTACCGATCCCGCTGCCACAACCCCCAGTCCGACTGAGGCTTAGACATGGAATGAACTCCCTA
* * * **
25274842 TGCCAAAGCCAACCCATGAAACGAGG-GTACGGGTGCTCAGTCGATCGGAGAGGCAGAATGCGCA
184 TGCCAAAGCCAACCCACGAAACG-GGCGTACGGGTGCTCAGCCGACCAAAGAGGCAGAATGCGCA
* * *
25274906 AGCCG-GGGATTGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACTG
248 AG-CGAAGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTACTG
25274955 GTCCAACTAC
Statistics
Matches: 251, Mismatches: 42, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
342 83 0.33
343 11 0.04
347 1 0.00
348 1 0.00
349 4 0.02
350 1 0.00
351 1 0.00
354 146 0.58
355 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTACGGCCGCTCAGC
CAGCCGAAGAGGCATAATGCGCAAGCCGAGGATCAACCCCGTCCCCCTCTGTGTGCTACCGATCC
CGCTGCCACAACCCCCAGTCCGACTGAGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAA
CCCACGAAACGGGCGTACGGGTGCTCAGCCGACCAAAGAGGCAGAATGCGCAAGCGAAGGATCGA
CCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCTAATCTCAGATT
GGGAATGAACTATGTATG
Found at i:25275026 original size:26 final size:26
Alignment explanation
Indices: 25274988--25275040 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25274978 CTAATCTGAT
25274988 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25275014 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
25275040 C
1 C
25275041 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25275462 original size:158 final size:158
Alignment explanation
Indices: 25275013--25275516 Score: 467
Period size: 158 Copynumber: 3.2 Consensus size: 158
25275003 AACTCCATAT
*
25275013 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAGCGTGCGGGTGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACG-AA--A-CGAGCGTGCGGGTGC
* * * * * **
25275078 TCAGTCGATCGAAAAGGCAGAATGCACAAGTCG-GGGATCGACCCGATCCCCCCTACATGCTGTT
62 TCAGCCGATCGGAGAGGCAGAATGCACAAGCCGAGGGATCGA-CCGATCCCCCCTGCATGCTACT
* * * *
25275142 GATCCTACTACCACAACCCTCAGTCCGGTCTGA
126 GATCCTGCTGCCACAACCCTCGGTCCAGTCTGA
* * * *
25275175 TCTTAGAC-TGGAAATGAACTCCGTATGCCTAAG-TCAACCCATGAAAC-AGCGTGCGGGCGCTG
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCGTGCGGGTGCTC
* * * * * *
25275237 AGCCGAACAGAGAGGCATAAT-CTACAAGCCGA-GGATCGGCCCAGTCCCTCTCTG--TG-TACT
64 AGCCGATCGGAGAGGCAGAATGC-ACAAGCCGAGGGATCGACCGA-TCCC-CCCTGCATGCTAC-
*
25275297 GTCGATCCTGCTGCCACAACCCTCGGTCCAGT-TGGG
125 -T-GATCCTGCTGCCACAACCCTCGGTCCAGTCT-GA
* *
25275333 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGAGCGTGCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGTGCTCAG
* *
25275398 CCTG-TCGGAGAGGCAGAATGCGCAAG-CGAGGGACCGACTCGATCCCCCCTGCATGCTACTGAT
66 CC-GATCGGAGAGGCAGAATGCACAAGCCGAGGGATCGAC-CGATCCCCCCTGCATGCTACTGAT
* * **
25275461 CCTGCTGTCGCAACCCTCGGTCTGGTCTGA
129 CCTGCTGCCACAACCCTCGGTCCAGTCTGA
* *
25275491 TCTTAGAC-TGGGAATGAACTCTGTAT
1 GCTTAGACAT-GGAATGAACTCCGTAT
25275517 ACTTAGACTG
Statistics
Matches: 275, Mismatches: 45, Indels: 48
0.75 0.12 0.13
Matches are distributed among these distances:
155 1 0.00
156 6 0.02
157 48 0.17
158 122 0.44
159 49 0.18
160 6 0.02
161 8 0.03
162 35 0.13
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGATCGGAGAGGCAGAATGCACAAGCCGAGGGATCGACCGATCCCCCCTGCATGCTACTGATCC
TGCTGCCACAACCCTCGGTCCAGTCTGA
Found at i:25275521 original size:26 final size:26
Alignment explanation
Indices: 25275492--25275542 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25275482 CTGGTCTGAT
*
25275492 CTTAGACTG-GGAATGAACTCTGTATA
1 CTTAGACTGCGG-ATGAACTCCGTATA
25275518 CTTAGACTGCGGATGAACTCCGTAT
1 CTTAGACTGCGGATGAACTCCGTAT
25275543 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGCGGATGAACTCCGTATA
Found at i:25276245 original size:26 final size:26
Alignment explanation
Indices: 25276216--25276277 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
25276206 TTACACTGGT
* *
25276216 AATGAACTCTATATGCTTAGACAAGG
1 AATGAACTCCACATGCTTAGACAAGG
* *
25276242 AATGAACTCCGCATGCTTAGACATGG
1 AATGAACTCCACATGCTTAGACAAGG
25276268 AATGAACTCC
1 AATGAACTCC
25276278 GTATGCCTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.24
Consensus pattern (26 bp):
AATGAACTCCACATGCTTAGACAAGG
Found at i:25276278 original size:26 final size:26
Alignment explanation
Indices: 25276228--25276283 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
25276218 TGAACTCTAT
25276228 ATGCTTAGACAAGGAATGAACTCCGC
1 ATGCTTAGACAAGGAATGAACTCCGC
* *
25276254 ATGCTTAGACATGGAATGAACTCCGT
1 ATGCTTAGACAAGGAATGAACTCCGC
25276280 ATGC
1 ATGC
25276284 CTAAGCCAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.23
Consensus pattern (26 bp):
ATGCTTAGACAAGGAATGAACTCCGC
Found at i:25276465 original size:26 final size:26
Alignment explanation
Indices: 25276428--25276478 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25276418 TGATTCGATC
25276428 TTAGACTGGGAATGAACTCCATATGT
1 TTAGACTGGGAATGAACTCCATATGT
*
25276454 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCATATG
25276479 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:25277298 original size:26 final size:26
Alignment explanation
Indices: 25277257--25277309 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25277247 TCGATTCGAT
25277257 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25277283 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
25277309 C
1 C
25277310 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25278171 original size:26 final size:26
Alignment explanation
Indices: 25278130--25278182 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25278120 CTGATCTGAT
25278130 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
25278156 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25278182 C
1 C
25278183 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25278889 original size:26 final size:26
Alignment explanation
Indices: 25278851--25278900 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
25278841 GGCTCAAAAT
25278851 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25278877 CTTAGACAT-GGAATGAACTCCATA
1 CTTAGAC-TGGGAATGAACTCCATA
25278901 CGCCTATGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25279426 original size:26 final size:26
Alignment explanation
Indices: 25279388--25279439 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25279378 CCAGTCCAAT
25279388 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25279414 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25279440 TCTATGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25283009 original size:158 final size:158
Alignment explanation
Indices: 25282522--25283022 Score: 508
Period size: 158 Copynumber: 3.2 Consensus size: 158
25282512 ACTTCGTATG
* * * *
25282522 CTTAGACAT-GGAATGAACTCAATATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAA
1 CTTAGA-ATGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *
25282586 CCGACCGGAGAGGTAAAATGCGCAAGTCGGGGATC-GACCCGATCCCCTCTGGGTGCTATCGATC
65 TCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAG-CCCGATCCCCTCTGCGTGCTATCGATC
* * *
25282650 CTACTATCGTAACCCTCGATCCGGTCTGAT
129 CTACTGTCGTAACCCTCGGTCCGGTCCGAT
* * * * * * *
25282680 CTTAGACTGGTAATGAACTCCGTTTGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGT
1 CTTAGAATGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGT
* * *
25282745 CGGCCGAAGAGGCATAATG-GCAAGCCGGGGATCAGCCCGATCCCCTTCTGCGTGCTATCGGTCC
66 CGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCCC-TCTGCGTGCTATCGATCC
** * ** * * * **
25282809 CGCTGCCACAACCGTTGGTCCGG-CTGGGG
130 TACTGTCGTAACCCTCGGTCCGGTC-CGAT
* * * * * *
25282838 CTGAGACAT-GGAATGAAGTCCCTATGCCTAAGCCAACCCACGAAACAAGCATACGGGTGCTCAG
1 CTTAGA-ATGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * **
25282902 TCGGCCGGAGAGGCAGAATGCGCAAGCCGTGGATCAGCCCGATCCCCCCTGCATGCTGCCGATCC
65 TCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCCCTCTGCGTGCTATCGATCC
*
25282967 TACTGTCGTAACCCTCGGTCTGGTCCGAT
130 TACTGTCGTAACCCTCGGTCCGGTCCGAT
*
25282996 CTTAGATTGGGAATGAACTCCATATGC
1 CTTAGAATGGGAATGAACTCCATATGC
25283023 TTAGACTAGG
Statistics
Matches: 269, Mismatches: 66, Indels: 16
0.77 0.19 0.05
Matches are distributed among these distances:
157 26 0.10
158 216 0.80
159 27 0.10
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGAATGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGT
CGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCGATCCCCTCTGCGTGCTATCGATCCT
ACTGTCGTAACCCTCGGTCCGGTCCGAT
Done.