Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 259 of 402
Found at i:25283711 original size:26 final size:26
Alignment explanation
Indices: 25283682--25283734 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25283672 TCAGTCTGAT
*
25283682 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25283708 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25283734 C
1 C
25283735 ATAATGTGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25284183 original size:26 final size:26
Alignment explanation
Indices: 25284132--25284184 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25284122 CTGATCCAAC
* *
25284132 CTTAGATTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25284158 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25284184 C
1 C
25284185 CTACGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25284684 original size:12 final size:12
Alignment explanation
Indices: 25284669--25284703 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
25284659 GTGCTGCCAA
* *
25284669 TCCTGCTGCTGG
1 TCCTGCTACCGG
25284681 TCCTGCTACCGG
1 TCCTGCTACCGG
25284693 TCCTGCTACCG
1 TCCTGCTACCG
25284704 CAACTTTCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.06, C:0.40, G:0.26, T:0.29
Consensus pattern (12 bp):
TCCTGCTACCGG
Found at i:25285259 original size:26 final size:26
Alignment explanation
Indices: 25285223--25285301 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
25285213 CTGGTTCGAT
*
25285223 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
25285249 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
25285275 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
25285301 C
1 C
25285302 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:25285621 original size:26 final size:27
Alignment explanation
Indices: 25285592--25285645 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
25285582 CCGGTCCGGT
25285592 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTGGGGAATGAACTCCGTATG
*
25285618 CTTAGACTGGGGGATGAACTCCGTATG
1 CTTAGACTGGGGAATGAACTCCGTATG
25285645 C
1 C
25285646 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (27 bp):
CTTAGACTGGGGAATGAACTCCGTATG
Found at i:25285762 original size:12 final size:12
Alignment explanation
Indices: 25285747--25285777 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
25285737 CTGTCGATCT
*
25285747 TGCTACTGGTCC
1 TGCTACCGGTCC
25285759 TGCTACCGGTCC
1 TGCTACCGGTCC
25285771 TGCTACC
1 TGCTACC
25285778 ACAACCCTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.39, G:0.23, T:0.29
Consensus pattern (12 bp):
TGCTACCGGTCC
Found at i:25285829 original size:26 final size:26
Alignment explanation
Indices: 25285800--25285852 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25285790 CCGGCCCGAT
25285800 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
25285826 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25285852 C
1 C
25285853 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25286179 original size:155 final size:156
Alignment explanation
Indices: 25285826--25286283 Score: 397
Period size: 155 Copynumber: 2.9 Consensus size: 156
25285816 ACTCCGTATG
* * * *
25285826 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAATGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCAGC
* ** *
25285891 CGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGTGTGCTATCGATCCT
66 CGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGATCCCCCCTACGAGCTATCGAT-CT
* * **
25285956 ACTACCGCAACCCTTGATCCGATCCATT
130 A-TACCACAACCCTCGATCCGATCCAGC
** * * * * * *
25285984 CTTAGACCGGGAATGAAGTCCGTATGCCTAAGTCATCCCATGAAATGAGCGTTCGGGCGCTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCAGC
* * * * * * *
25286049 TGATCAGAGAGGCATAATGCGTAAGCCGGGGATTGAGCCAG-TCCTCCTCTACGAGCTGTCGGT-
66 CGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCAGATCC-CCCCTACGAGCTATCGATC
* **
25286112 T-TACCACAACCCTCGGTCCGA-CTGGGC
129 TATACCACAACCCTCGATCCGATC-CAGC
* * ** * *
25286139 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAT-AGGCATGCATGCACTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGA-ACGTGCGGGCGCTCAG
** * * * * * *
25286203 CCGATTGGAGAGGCAGAATGCGCAAGCCGGGTATCAACCCGGT-CCCCCTACGTGCTACCGATCA
65 CCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGATCCCCCCTACGAGCTATCGATC-
*
25286267 TACTACCACAACACTCG
129 TA-TACCACAACCCTCG
25286284 GTCTGGTTTG
Statistics
Matches: 234, Mismatches: 57, Indels: 19
0.75 0.18 0.06
Matches are distributed among these distances:
153 13 0.06
154 6 0.03
155 98 0.42
157 14 0.06
158 88 0.38
159 15 0.06
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCAGC
CGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGATCCCCCCTACGAGCTATCGATCTA
TACCACAACCCTCGATCCGATCCAGC
Found at i:25286332 original size:26 final size:26
Alignment explanation
Indices: 25286296--25286348 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25286286 CTGGTTTGAT
25286296 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
25286322 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25286348 C
1 C
25286349 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25287596 original size:26 final size:26
Alignment explanation
Indices: 25287558--25287610 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25287548 CCGATCCAAT
*
25287558 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25287584 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25287610 C
1 C
25287611 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25287630 original size:881 final size:876
Alignment explanation
Indices: 25285767--25287683 Score: 2223
Period size: 882 Copynumber: 2.2 Consensus size: 876
25285757 CCTGCTACCG
* * * *
25285767 GTCCTGCTACCACAACCCTTGGTCCGGCCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGA
1 GTCCTGCTACCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* * * *
25285832 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAATGTGCGGGTGCTCAGCCGATCA
66 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGC-GGTCCTCAACCAATCA
* *
25285897 GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGTGTGCTATCGATCCTACTACC
130 GAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGTGTGCTATCGATCCTACTACC
* *
25285962 GCAACCCTTGATCCGATCCATTCTTAGACCGGGAATGAAGTCCGTATGCCTAAGTCATCCCATGA
195 GCAACCCTTGATCCGATCCATTCTTAAACCGGGAATGAACTCCGTATGCCTAAGTCATCCCATGA
* * * * * **
25286027 AATGAGCGTTCGGGCGCTGAGCTGATCAGAGAGGCATAATGCGTAAGCCGGGGATTGAGCCAGTC
260 AACGAGCGTGCGGGCGCTCAACCGATCAGAGAGGCATAATGCACAAGCCGGGGATTGAGCCAGTC
* * *
25286092 CTCCTCTACGAGCTGTCGGTTTACCACAACCCTCGGTCCGACTGGGCCTTAGACATGGAATGAAC
325 CCCCTCTACGAGCTGTCAGTCTACCACAACCCTCGGTCCGACTGGGCCTTAGACATGGAATGAAC
* * **
25286157 TCCGTATGCCTAAGCCAACCCATGAAATAGGCATGCATGCACTCAACCGATTGGAGAGGCAGAAT
390 TCCCTATGCCTAAGCCAACCCATGAAATAGGCATGCAGGCACTCAACCGACCGGAGAGGCAGAAT
* * *
25286222 GCGCAAGCCGGGTATCAACCCGGTCCCCCTACGTGCTACCGATCATACTACCACAACACTCGGTC
455 GCACAAGCCGGGTATCAACCCGATCCCCCTACGTACTACCGATCATACTACCACAACACTCGGTC
* ** *
25286287 TGGTTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCAA
520 GGGTCCGATCTTAGACTAAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCAA
* * *
25286352 AGTCAACCCATGAAATCAGCGTGCGGGCGCTCAGTCGACCAAAGAGGCCAGCTAGAAAGGCATAA
585 AGTCAACCCAAGAAATCAGCGTGCGGGCACTCACTCGACCAAAGAGGCCAGCTAGAAAGGCATAA
** * * * *
25286417 TGTGCAAGCCAGGGATCAGCCCAGTCCACCTCTGCGTGCTGTCGATCCCGCTGTCGGTCCTACTG
650 TACGCAAGCCAGGGATCAACCCAGTCCACCTCTACGTGCTGTCGATCCCGCTGCCGGTCCTACTA
* * * * * *
25286482 CCATAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
715 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCAT
* ** ** *
25286547 GAAACAAGCGTGCGGGTGCTCAACCGGTCGAAGAGGCAGAATGCGTAACCCGGGGATCAGCCCGG
780 GAAACAAGCGTGCAGGCACTCAACCAATCGAAGAGGCAGAATGCGTAACCCGGGAATCAGCCCGG
* * *
25286612 TCCCCCCCTGCATGCTACCAATCCTGCTGTTG
845 TCCCCCCCTGCATGCTACCAATCCTACTGCTA
* * *
25286644 GTCGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
1 GTCCTGCTACCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
* * * * *
25286709 CATGAAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAATGTGCAGGTCCTAAACCAACCG
66 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGC-GGTCCTCAACCAATCA
* * * * * **
25286774 GAGAGGTAGAATGCGTAAGTCAGGGA-CTGGCTCGATCCCCCCTGTGTGCTATCGATCCTGCTGT
130 GAGAGGTAGAATGCGCAAGCCAGGGATC-GACCCGATCCCCCCTGTGTGCTATCGATCCTACTAC
* * * ** *
25286838 CGCAACCCTTGGTCCGGTCTGA-TCTTAAATTGGGAATGAACTCTGTATGCCTAAGTCCA-CCCA
194 CGCAACCCTTGATCCGATC-CATTCTTAAACCGGGAATGAACTCCGTATGCCTAAGT-CATCCCA
* * *
25286901 TGAAACGAGCGTGCGGGCGCTCAACCGA-CTGAAGAGGCATAATGCACAAGTCGGGGATTGA-CT
257 TGAAACGAGCGTGCGGGCGCTCAACCGATCAG-AGAGGCATAATGCACAAGCCGGGGATTGAGCC
* * * *
25286964 TGATCCCCCTCTGCGTGCTGTCAGTCCCGCTGCC-CTAACCCTCGGTCC-AGCTAGGG-CTTAGA
321 AG-TCCCCCTCTACGAGCTGTCAGT----CTACCAC-AACCCTCGGTCCGA-CT-GGGCCTTAGA
* * * *** *
25287026 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCTTGCGGGCACTCAGTTGGCCG
378 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGCATGCAGGCACTCAACCGACCG
* **
25287091 GAGAGGCAGAATGCACAAGCCAGGG-ATCAACCCGATCCCTCCTGCGTACTGTCGATC-TAGCTA
443 GAGAGGCAGAATGCACAAGCC-GGGTATCAACCCGATCCC-CCTACGTACTACCGATCATA-CTA
* * * *
25287154 CCGCAACCCTCGGTCGGGTCCGATCTTAGACTAAGAATGAACTCTGTATGCTTAGACTGGGGATG
505 CCACAACACTCGGTCGGGTCCGATCTTAGACTAAGAATGAACTCCGTATGCTTAGACTAGGGATG
* * ** * * * * *
25287219 AACTCCGTATGCCTAGGTCAACCCAAGAAATGTGGGTGCGGGCATTCAACT-GATCGAAGAGGTC
570 AACTCCGTATGCCAAAGTCAACCCAAGAAATCAGCGTGCGGGCACTC-ACTCGACCAAAGAGGCC
* ** *
25287283 -GACT-GAAGAGGCATAATACGTAAG-TTGAGGATCAACCCGGTTCC-CCTCTACGTGCTGTCGA
634 AG-CTAGAA-AGGCATAATACGCAAGCCAG-GGATCAACCCAG-TCCACCTCTACGTGCTGTCGA
* * * *
25287344 TCCTGCTGCCGGTCTTGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTTC
695 TCCCGCTGCCGGTCCTACTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCC
** * *
25287409 ATACGCCTAAGCCAACCCATGAAATGAGTGTGCAGGCACTCAGCCAATCAGAA-AGGCAGAATGC
760 ATACGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCACTCAACCAATC-GAAGAGGCAGAATGC
* * ** * * ** *
25287473 GTAAGCTGGGAAT-AGGTTCGGT-CCCTCTTGTGTGCTACCGATCCTACTGCTA
824 GTAACCCGGGAATCA-GCCCGGTCCCCCCCTGCATGCTACCAATCCTACTGCTA
* ** * *
25287525 GTCCTGTTATTGCAACCCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
1 GTCCTGCTACCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
** ** *
25287590 CATGGAATGAACTCCGTATGCCTAAGCCAACCTGCGAAACGAGCGTGCGGGCACTCAACCAATCA
66 CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCGGTC-CTCAACCAATCA
*
25287655 GAGAGGTAGAATGCGCAAGCCGGGGATCG
130 GAGAGGTAGAATGCGCAAGCCAGGGATCG
25287684 GATCGGTCCC
Statistics
Matches: 865, Mismatches: 151, Indels: 44
0.82 0.14 0.04
Matches are distributed among these distances:
876 5 0.01
877 283 0.33
878 3 0.00
880 5 0.01
881 272 0.31
882 289 0.33
883 8 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (876 bp):
GTCCTGCTACCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCGGTCCTCAACCAATCAG
AGAGGTAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGTGTGCTATCGATCCTACTACCG
CAACCCTTGATCCGATCCATTCTTAAACCGGGAATGAACTCCGTATGCCTAAGTCATCCCATGAA
ACGAGCGTGCGGGCGCTCAACCGATCAGAGAGGCATAATGCACAAGCCGGGGATTGAGCCAGTCC
CCCTCTACGAGCTGTCAGTCTACCACAACCCTCGGTCCGACTGGGCCTTAGACATGGAATGAACT
CCCTATGCCTAAGCCAACCCATGAAATAGGCATGCAGGCACTCAACCGACCGGAGAGGCAGAATG
CACAAGCCGGGTATCAACCCGATCCCCCTACGTACTACCGATCATACTACCACAACACTCGGTCG
GGTCCGATCTTAGACTAAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCAAA
GTCAACCCAAGAAATCAGCGTGCGGGCACTCACTCGACCAAAGAGGCCAGCTAGAAAGGCATAAT
ACGCAAGCCAGGGATCAACCCAGTCCACCTCTACGTGCTGTCGATCCCGCTGCCGGTCCTACTAC
CACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCATACGCCTAAGCCAACCCATG
AAACAAGCGTGCAGGCACTCAACCAATCGAAGAGGCAGAATGCGTAACCCGGGAATCAGCCCGGT
CCCCCCCTGCATGCTACCAATCCTACTGCTA
Found at i:25287903 original size:26 final size:26
Alignment explanation
Indices: 25287867--25287919 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25287857 CTGGTTCGAT
25287867 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25287893 CTTAGACTGGGGATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25287919 C
1 C
25287920 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25288996 original size:26 final size:26
Alignment explanation
Indices: 25288958--25289007 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
25288948 CTGGTTTGAT
25288958 CTTAGACTGGGAATGAACTCCATACG
1 CTTAGACTGGGAATGAACTCCATACG
*
25288984 CTTAGACAT-GGAATGAAGTCCATA
1 CTTAGAC-TGGGAATGAACTCCATA
25289008 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATACG
Found at i:25289412 original size:159 final size:158
Alignment explanation
Indices: 25288983--25289430 Score: 449
Period size: 159 Copynumber: 2.8 Consensus size: 158
25288973 AACTCCATAC
* * *
25288983 GCTTAGACATGGAATGAAGTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * * * *
25289048 CCAGCCGGAGAGGTAGAATGCGCAAGTC-AGGGATCGGCCTAGTCCTCCCCAGCATGCTGTCGAT
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGA-GGATCAGCCTAGTCC-CCCCTGCGTGCTCTCGAT
** * * * *
25289112 CCTGTTACCGCAACCCTCTATCTGGTCTGA
129 CCCATTACCACAACCCTCGATCTCGACTGA
* * * * * * * *
25289142 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * *
25289206 GCCGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAG-CTCGGTCCCCCTCTGTGTGCTACT-G
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCT-AGTCCCCC-CTGCGTGCT-CTCG
* *
25289269 GTCCCATTACCACAACCCTCGATC-CGACTGGG
127 ATCCCATTACCACAACCCTCGATCTCGACT-GA
* * *
25289301 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * *
25289366 CCGGTCAGAGAGGCAGAATGTGTAAGCCGAGGATCAGCCTAATCCCCCCTGCGTGCTGC-CGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCTAGTCCCCCCTGCGTGCT-CTCGATC
25289430 C
130 C
25289431 TGCTGTCACA
Statistics
Matches: 231, Mismatches: 49, Indels: 19
0.77 0.16 0.06
Matches are distributed among these distances:
158 22 0.10
159 204 0.88
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCTAGTCCCCCCTGCGTGCTCTCGATCC
CATTACCACAACCCTCGATCTCGACTGA
Found at i:25289489 original size:26 final size:26
Alignment explanation
Indices: 25289460--25289512 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25289450 CTGGTCCGAT
**
25289460 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
*
25289486 CTTAGACTGGGGACAAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
25289512 C
1 C
25289513 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTCCGTATG
Found at i:25289737 original size:514 final size:513
Alignment explanation
Indices: 25288768--25290744 Score: 1658
Period size: 514 Copynumber: 3.8 Consensus size: 513
25288758 CTGCTGTCAT
* *
25288768 AACCCTC-AGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTTAGCCAACCCACGAA
1 AACCCTCGA-TCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
** ** * * * * *
25288832 ACGAGG-GTGCGGGTGCTCAGCCGACCAGAGAGGTAGAATGTGCAAGCCGGGGATC-GACCTGGT
65 ACG-GGCGTGCGGGCACTCAGCCGGTCAGAGAGGCAGAATGCGTAAGCCGAGGATCAG-CCTAGT
* * ** ***
25288895 CCCCCCTACATGTTGTTGATCCCGCTGCTAGTCCTGCTGTCTCAACCCTCAATCTGGTTTGATCT
128 CCCCCCTAC--G-TGCTG----C-C-G--A-TCCTGCTGTCACAACCCTCGGTCTGGTCCAATCT
* * * * * *
25288960 TAGACTGGGAATGAACTCCATACGCTTAGACAT-GGAATGAAGTCCATATGCCTAAGCCAACCCA
181 TAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * * *
25289024 TGAAACAAGCGTGCGGGCGCTCAGCCAGCCGGAGAGGTAGAATGCGCAAGTC-AGGGATCGGCCT
245 TGAAACGAGCGTACGGGCGCTCAACCGGCTGGAGAGGCATAATGCACAAGTCGA-GGATCAGCC-
* * * ** * ** *
25289088 AGTCCTCCC-CAGCATGCTGTCGA--TC-CTGTTA--CC-GCAACC-C-TCTATCTGGTCTG-AT
308 AGTCC-CCCTCTGCGTGCTGTCGATCTCGCTGCTAGTCCTGCTGCCACAACCCTC-GGTCCGAAT
* * * *
25289143 ----CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTTCGGGCACT
371 GGGGCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGGCACT
* * * *
25289204 GAGCCGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGGTCCCCCTCTGTGTGCT-ACT
436 GAGCTGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGATCCCCCTCTGTATGCTGTC-
* **
25289268 GGTCCCATTACCAC
500 GGTCTCGCTACCAC
*
25289282 AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * *
25289347 CGGGCATGCGGGCACTCAGCCGGTCAGAGAGGCAGAATGTGTAAGCCGAGGATCAGCCTAATCCC
66 CGGGCGTGCGGGCACTCAGCCGGTCAGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCTAGTCCC
* *
25289412 CCCTGCGTGCTGCCGATCCTGCTGTCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAA
131 CCCTACGTGCTGCCGATCCTGCTGTCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAA
**
25289477 CTCCGTATGCTTAGACTGGGGACAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGG
196 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGG
* * * * *
25289542 GTGCTCAACCGGCTGGAGAGGCATAATGCACAAGCCGAGGATCAGCTCAGTCCCTCTCTGTGTCC
261 GCGCTCAACCGGCTGGAGAGGCATAATGCACAAGTCGAGGATCAGC-CAGTCCCCCTCTGCGTGC
*
25289607 TGTCGATCTCGCTGCTAGTCCTGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACAT-GGAAT
325 TGTCGATCTCGCTGCTAGTCCTGCTGCCACAACCCTCGGTCCGAATGGGGCTTAGAC-TGGGAAT
* ** *
25289671 GAAC-TCTGTCTGCCTAAGCCAACCCACAAAATGAACGTGCGGGCACTGAGCTGGTCGGAAAGGC
389 GAACTTC-GTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGGCACTGAGCTGGTCGGAGAGGC
* * * *
25289735 ATAATGCGCAAGCC-AGGGATCGGCTCGATCCTCCTCTGTATACTGTCGGTCTTGCTACCAC
453 ATAATGCGCAAGCCGA-GGATCAGCTCGATCCCCCTCTGTATGCTGTCGGTCTCGCTACCAC
* * * *
25289796 AACCCTCGATCCGATTGGGGCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAACCCCCGACA
1 AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
* * * * * * *
25289861 TGGGCGTGAGGACACTTAGCCGG-CTAGAGAGGCAGAATGCGCAAGCCGGGGATC-GACCTGGTC
66 CGGGCGTGCGGGCACTCAGCCGGTC-AGAGAGGCAGAATGCGTAAGCCGAGGATCAG-CCTAGT-
* * *
25289924 CCCCCCTACGTGCTGCCGATCTTGCTGCTGGTCCTGCTACCGCAACTCTCAGTCCGGTCCAATCT
128 CCCCCCTACGTGCTGCCGATC---CTGCT-G---T-C-A---CAACCCTCGGTCTGGTCCAATCT
* *
25289989 TAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
181 TAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCA
** * * * * * * *
25290053 TGGGACGAGCATACGGGCACTCAACCGG-TCAGAGAGGTAGAATGCACAAGTC-AGGGATTGACC
245 TGAAACGAGCGTACGGGCGCTCAACCGGCT-GGAGAGGCATAATGCACAAGTCGA-GGA-TCAGC
* * * * **
25290116 CGGTCCCCCT-TGCGTGCTGTCGA--TC-CTGCTA-TCGTAAC--CCTC-AGTCT-GGTCC-AAT
307 CAGTCCCCCTCTGCGTGCTGTCGATCTCGCTGCTAGTCCT-GCTGCCACAACCCTCGGTCCGAAT
* * ** * * * *
25290171 ----CTAAGACTGGGAATGCACTTCGTATGCCTAAGTGAATCCTCAAAATGAGGGTTCGGGCACT
371 GGGGCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGGCACT
* * * * * * * **
25290232 GAG-TCGATCGGAGAGGCATAATGCGCTTA-CTGGGGAT-TGACCCGATCCCCTTCTACATGCTG
436 GAGCT-GGTCGGAGAGGCATAATGCGC-AAGCCGAGGATCAG-CTCGATCCCCCTCTGTATGCTG
* *
25290294 TCGATCTCGCTGCCAC
498 TCGGTCTCGCTACCAC
*
25290310 AACCCTCAGTTCCG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
1 AACCCTC-GATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * * ** * * * * *
25290374 ACGGGTGTACGGGCACTCAACCAGTTGGAGAGGTAAAATGCGTAAGCCAAGGATCTA-TCTCGTC
65 ACGGGCGTGCGGGCACTCAGCCGGTCAGAGAGGCAGAATGCGTAAGCCGAGGATC-AGCCTAGTC
* * * * * *
25290438 CCCCCTACATGCTGTCGATCCTGCTGCCGCAACCCTCGATTTGGTCCAATCTTAGACTGGGAATG
129 CCCCCTACGTGCTGCCGATCCTGCTGTCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATG
* *
25290503 AACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGC
194 AACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTAC
* * * * * *
25290568 GGGCGCTCAACCGGCCGAAGAGACATAATGCACAAGTCGGGGATCAGCCCGATCCCCCTCTGCAT
259 GGGCGCTCAACCGGCTGGAGAGGCATAATGCACAAGTCGAGGATCAGCCAG-TCCCCCTCTGCGT
** * * * * * ** **
25290633 GCTACCCATCCCGCTGTTGGTCTTGCTGCCACAACCCTCATTCCGGCTGGGGCTTAGACAT-GGA
323 GCTGTCGATCTCGCTGCTAGTCCTGCTGCCACAACCCTCGGTCCGAATGGGGCTTAGAC-TGGGA
**
25290697 ATGAAC-TCGGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCAC
387 ATGAACTTC-GTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGGCAC
25290745 CCAGCCAGCC
Statistics
Matches: 1173, Mismatches: 216, Indels: 148
0.76 0.14 0.10
Matches are distributed among these distances:
500 6 0.01
501 130 0.11
502 156 0.13
503 3 0.00
504 3 0.00
505 12 0.01
506 4 0.00
507 6 0.01
508 7 0.01
509 10 0.01
510 10 0.01
511 4 0.00
512 1 0.00
513 31 0.03
514 577 0.49
515 33 0.03
518 7 0.01
519 6 0.01
520 3 0.00
521 3 0.00
522 4 0.00
523 8 0.01
524 3 0.00
526 13 0.01
527 129 0.11
528 4 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (513 bp):
AACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
CGGGCGTGCGGGCACTCAGCCGGTCAGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCTAGTCCC
CCCTACGTGCTGCCGATCCTGCTGTCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAA
CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGG
GCGCTCAACCGGCTGGAGAGGCATAATGCACAAGTCGAGGATCAGCCAGTCCCCCTCTGCGTGCT
GTCGATCTCGCTGCTAGTCCTGCTGCCACAACCCTCGGTCCGAATGGGGCTTAGACTGGGAATGA
ACTTCGTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGGCACTGAGCTGGTCGGAGAGGCATA
ATGCGCAAGCCGAGGATCAGCTCGATCCCCCTCTGTATGCTGTCGGTCTCGCTACCAC
Found at i:25289947 original size:159 final size:159
Alignment explanation
Indices: 25289628--25289949 Score: 351
Period size: 159 Copynumber: 2.0 Consensus size: 159
25289618 CTGCTAGTCC
* * ** *
25289628 TGCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCTGTCTGCCTAAGCCAA
1 TGCTACCACAACCCTCGATCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * *
25289693 CCCACAAAATGAACGTGCGGGCACTGAGCTGGTCGGAAAGGCATAATGCGCAAGCCAGGGATCGG
66 CCCACAAAATGAACGTGAGGACACTGAGCCGGTCAGAAAGGCAGAATGCGCAAGCCAGGGATCGC
* * ** * *
25289758 CTCGATCCTCCTCTGTATACTGTCGGTCT
131 CTCGATCCCCCCCTACATACTGCCGATCT
*
25289787 TGCTACCACAACCCTCGATCCGATTGGGGCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAA
1 TGCTACCACAACCCTCGATCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * ** * * *
25289852 CCCCCGACATGGGCGTGAGGACACTTAGCCGG-CTAGAGAGGCAGAATGCGCAAGCCGGGGATCG
66 CCCACAAAATGAACGTGAGGACACTGAGCCGGTC-AGAAAGGCAGAATGCGCAAGCCAGGGATCG
* * *
25289916 ACCT-GGTCCCCCCCTACGTGCTGCCGATCT
130 -CCTCGATCCCCCCCTACATACTGCCGATCT
25289946 TGCT
1 TGCT
25289950 GCTGGTCCTG
Statistics
Matches: 132, Mismatches: 29, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
158 1 0.01
159 129 0.98
160 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
TGCTACCACAACCCTCGATCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACAAAATGAACGTGAGGACACTGAGCCGGTCAGAAAGGCAGAATGCGCAAGCCAGGGATCGC
CTCGATCCCCCCCTACATACTGCCGATCT
Found at i:25290016 original size:26 final size:26
Alignment explanation
Indices: 25289987--25290039 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25289977 CCGGTCCAAT
25289987 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25290013 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25290039 C
1 C
25290040 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25290524 original size:26 final size:26
Alignment explanation
Indices: 25290488--25290540 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25290478 TTGGTCCAAT
*
25290488 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25290514 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25290540 C
1 C
25290541 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25290814 original size:355 final size:340
Alignment explanation
Indices: 25290289--25291273 Score: 913
Period size: 355 Copynumber: 2.8 Consensus size: 340
25290279 CCCTTCTACA
* * *
25290289 TGCTGTCGATCTCGCTGCCACAACCCTCAGTTCCGCTGGGGCTTAGACATGGAATGAACTCCCTA
1 TGCTGTCAATCTTGCTGCCACAACCCTCA-TTCCGCTGGGGCTTAGACATGGAATGAACTCCGTA
* * * * ** * *
25290354 TGCCTAAGCCAACCCACGAAACGGGTGTACGGGCACTCAACCAGTTGGAGAGGTAAAATGCGTAA
65 TGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAGCCAGCCGGAGAGGCAAAATGCGCAA
** ** * * * *
25290419 GCCAAGGATCTATCTC-GTCCCCCCTACATGCTGTCGATCCTGCTGCCGCAACCCTCGATTTGGT
130 GCCGGGGATC-GGCCCGGTCCCCCCTACATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGT
*
25290483 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTC
194 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTC
* * * *
25290548 AACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCGAAGA-GACATAATGCACAAGTCGGGGAT
258 AACCCATGAAACGAGCGTGCAGGCGCTCAACCGACCGAAGAGGA-AAAATGCACAAGTCGGGGAC
25290612 C-A-GCCCGATCCCCCTCTGCATG
322 CGATG--CGATCCCCC-CTGC--G
***
25290634 CTACCCATCCCGCTGTTGGTCTTGCTGCCACAACCCTCATTCCGGCTGGGGCTTAGACATGGAAT
1 -------T---GCTGTCAATCTTGCTGCCACAACCCTCATTCC-GCTGGGGCTTAGACATGGAAT
* * * *
25290699 GAACTCGGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCACCCAGCCAGCCGAAGAGGCA
55 GAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAGCCAGCCGGAGAGGCA
* *
25290764 AAATACGCAAGCCGGGGATCGGCCCGGTCCCCCCTACATGCTACCGATCCTACTGTTGGTCCTGC
120 AAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACATGCTGCCGAT-C--C---T-G--CTGC
* * *
25290829 TGTCGAAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAA
176 ---CGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGA
* * * * * *
25290894 TGAACTCCGTATGCCTAAGCCAGCCC-TCGAAACGAGCGTTCAGGTGCTCAACCGACTGGAGAGG
237 TGAACTCCGTATGCCTAAGTCAACCCAT-GAAACGAGCGTGCAGGCGCTCAACCGACCGAAGAGG
* *
25290958 AAAAATGTACAAGTCGGGGACCGATGCGGTCCCCCCTGCG
301 AAAAATGCACAAGTCGGGGACCGATGCGATCCCCCCTGCG
** ** * * * ****
25290998 TGCTGTCAATCTTGCAACCGTAACCCTTATTTCGATCCAATCTTAGAC-TGGAAATGAACTCCGT
1 TGCTGTCAATCTTGCTGCCACAACCCTCATTCCGCT-GGGGCTTAGACATGG-AATGAACTCCGT
* ** * * *
25291062 ATGCCTAAGTCAACCCATGAAACGAGCCTGCGGGCACTGAGCCGGCCGGAGAGGCATAATGCGCA
64 ATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAGCCAGCCGGAGAGGCAAAATGCGCA
* * * * * * ** *
25291127 AGCTGGGGATCGGCCCGAT-CCCTCTGCGTGCTGCCGATCCTACTGTTGCAACCCTCGGTCTGAT
129 AGCCGGGGATCGGCCCGGTCCCCCCTACATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGT
* * * *
25291191 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTCGAGATGAAGTCCGTATGCCTAAGTC
194 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTC
*
25291256 AACCCATGAAATGAGCGT
258 AACCCATGAAACGAGCGT
25291274 ACGGATGCTC
Statistics
Matches: 520, Mismatches: 87, Indels: 63
0.78 0.13 0.09
Matches are distributed among these distances:
340 1 0.00
341 85 0.16
342 1 0.00
344 3 0.01
347 1 0.00
350 1 0.00
352 2 0.00
353 20 0.04
354 119 0.23
355 135 0.26
356 1 0.00
357 1 0.00
358 1 0.00
361 1 0.00
362 1 0.00
364 5 0.01
366 5 0.01
367 132 0.25
368 4 0.01
369 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (340 bp):
TGCTGTCAATCTTGCTGCCACAACCCTCATTCCGCTGGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAGCCAGCCGGAGAGGCAAAATGCGCAAG
CCGGGGATCGGCCCGGTCCCCCCTACATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCC
AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAAC
CCATGAAACGAGCGTGCAGGCGCTCAACCGACCGAAGAGGAAAAATGCACAAGTCGGGGACCGAT
GCGATCCCCCCTGCG
Found at i:25290884 original size:26 final size:26
Alignment explanation
Indices: 25290855--25290907 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25290845 CCGGTCCAAT
25290855 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25290881 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25290907 C
1 C
25290908 CTAAGCCAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25290972 original size:367 final size:355
Alignment explanation
Indices: 25290302--25290977 Score: 831
Period size: 367 Copynumber: 1.9 Consensus size: 355
25290292 TGTCGATCTC
25290302 GCTGCCACAACCCTCAGTTCCGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCAGTTCCGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * ** * * * * *
25290367 CCACGAAACGGGTGTACGGGCACTCAACCAGTTGGAGAGGTAAAATGCGTAAGCCAAGGATCTAT
66 CCACGAAACGAGTGTACGGGCACCCAACCAGCCGAAGAGGCAAAATACGCAAGCCAAGGATCTAG
* * **
25290432 CTCGTCCCCCCTACATGCTGTCGATCCTGCTGCCGCAACCCTCGATTTGGTCCAATCTTAGACTG
131 CCCGTCCCCCCTACATGCTGTCGATCCTGCTGCCGAAACCCTCGATCCGGTCCAATCTTAGACTG
* *
25290497 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGA
196 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA
* * *
25290562 GCGTGCGGGCGCTCAACCGGCCGAAGAGACATAATGCACAAGTCGGGGATCAGCCCGATCCCCCT
261 GCGTGCAGGCGCTCAACCGACCGAAGAGACAAAATGCACAAGTCGGGGATCAGCCCGATCCCCCT
25290627 CTGCATGCTACCCATCCCGCTGTTGGTCTT
326 CTGCATGCTACCCATCCCGCTGTTGGTCTT
**
25290657 GCTGCCACAACCCTCA-TTCCGGCTGGGGCTTAGACATGGAATGAACTCGGTATGCCTAAGCCAA
1 GCTGCCACAACCCTCAGTTCC-GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * ** *
25290721 CCCATGAAATGAGTGTGCGGGCACCCAGCCAGCCGAAGAGGCAAAATACGCAAGCCGGGGATC-G
65 CCCACGAAACGAGTGTACGGGCACCCAACCAGCCGAAGAGGCAAAATACGCAAGCCAAGGATCTA
* * *
25290785 GCCCGGTCCCCCCTACATGCTACCGATCCTACTGTTGGTCCTGCTGTCGAAACCCTCGGTCCGGT
130 GCCC-GTCCCCCCTACATGCT---G----T-C----GATCCTGCTGCCGAAACCCTCGATCCGGT
*
25290850 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC
182 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCATATGCCTAAGC
* * * * * *
25290914 CAGCCC-TCGAAACGAGCGTTCAGGTGCTCAACCGACTGGAGAGGA-AAAATGTACAAGTCGGGG
246 CAACCCAT-GAAACGAGCGTGCAGGCGCTCAACCGACCGAAGA-GACAAAATGCACAAGTCGGGG
25290977 A
309 A
25290978 CCGATGCGGT
Statistics
Matches: 267, Mismatches: 37, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
354 6 0.02
355 122 0.46
358 1 0.00
362 1 0.00
363 1 0.00
366 1 0.00
367 132 0.49
368 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (355 bp):
GCTGCCACAACCCTCAGTTCCGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGAGTGTACGGGCACCCAACCAGCCGAAGAGGCAAAATACGCAAGCCAAGGATCTAG
CCCGTCCCCCCTACATGCTGTCGATCCTGCTGCCGAAACCCTCGATCCGGTCCAATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGA
GCGTGCAGGCGCTCAACCGACCGAAGAGACAAAATGCACAAGTCGGGGATCAGCCCGATCCCCCT
CTGCATGCTACCCATCCCGCTGTTGGTCTT
Found at i:25292015 original size:26 final size:26
Alignment explanation
Indices: 25291986--25292038 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25291976 CCGGTCCGAT
*
25291986 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
* * *
25292012 CTTAGACTGGGGATAAACTCCTTATG
1 CTTACACTGGGAATAAACTCCGTATG
25292038 C
1 C
25292039 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCCGTATG
Found at i:25292232 original size:26 final size:26
Alignment explanation
Indices: 25292194--25292246 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25292184 CCGGTCTGAC
25292194 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
25292220 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
25292246 C
1 C
25292247 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:25293313 original size:158 final size:158
Alignment explanation
Indices: 25293002--25293338 Score: 385
Period size: 158 Copynumber: 2.1 Consensus size: 158
25292992 CTGCTGGTCC
* * * * *
25293002 TGCTGCCATAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCGTATTCCTAAGCTAA
1 TGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
25293067 CCCATGCAATGAACGTGCGGGCTCTGAGCCAGCCAGAGAGGCAGAATGCGCAAGTCAGGGATCGC
66 CCCACGAAACGAACGTGCGGGCTCTCAACCAGCCAGAGAGGCAGAATGCACAAGTCAGAGATCGC
* * *
25293132 CCGGTCCCCCTCTGTGTGCTGTCGGTAT
131 CCGGTCCCCCTCTGCGTGATGTCGATAT
* * *
25293160 TGCTACCACAACCCTCAGTCTGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
** *
25293225 CCCACGAAACGAGTGTGCGGG-TGCTCAACC-GACCAGGGAGGCAGAATGCACAAGTC-GAAGAT
66 CCCACGAAACGAACGTGCGGGCT-CTCAACCAG-CCAGAGAGGCAGAATGCACAAGTCAG-AGAT
* *
25293287 CAGCTCGGTCCCCC-CTGCGTGATGTCGATCT
128 C-GCCCGGTCCCCCTCTGCGTGATGTCGATAT
* *
25293318 TGCTGCCGCAACCCTCGGTCC
1 TGCTGCCACAACCCTCAGTCC
25293339 TGTCCAACCT
Statistics
Matches: 148, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
157 3 0.02
158 134 0.91
159 11 0.07
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAACGTGCGGGCTCTCAACCAGCCAGAGAGGCAGAATGCACAAGTCAGAGATCGC
CCGGTCCCCCTCTGCGTGATGTCGATAT
Found at i:25293330 original size:513 final size:513
Alignment explanation
Indices: 25292454--25293428 Score: 1264
Period size: 513 Copynumber: 1.9 Consensus size: 513
25292444 AGGGATCGGC
* *
25292454 CCCCCTCTGCGTGCTTCTGATCCCGCTACCGATCCTACTGCCATAACCCTTGATCCGATTGGGGT
1 CCCCCTCTGCGTGCTTCTGATCCCGCTACCGATCCTACTGCCATAACCCTCGATCCGATTGGGGC
*
25292519 TTAGACATGGAATGAACTCCGCATTCCTAAGCCAACCCATGAAACGAGCGTACGGGCTCTGAGCC
66 TTAGACATGGAATGAACTCCGCATTCCTAAGCCAACCCATGAAACGAACGTACGGGCTCTGAGCC
** * * * * *
25292584 GACTGGAGAGGGAGAATGGGCAAGTTCAGGATTGACTCAGTCCCCCTCTATATGCTGCCGGTCCC
131 GACCAGAGAGGCAGAATGCGCAAGTTCAGGATCGACCCAGTCCCCCTCTATATGCTGCCGGTACC
* * *
25292649 GCTGCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
196 GCTACCACAACCCTCGAGTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * ** **
25292714 CCACGAAACGGACGTGCGGGTGCTTAACCGGCTGGAGAGGCAAAATGCGTAGTCGGGGATCGACC
261 CCACGAAACGGACGTGCGGGTGCTCAACCGCCAGGAGAGGCAAAATGCCAAGTCGAAGATCGACC
* * * * * *
25292779 CGATCCCCCCTGTATGCTACCGATCCTACTGTCGCAACCCTCGGTCCAGTTCGATCTTAGACTAG
326 CGATCCCCCCTGCATGATACCGATCCTACTGCCGCAACCCTCGGTCCAGTCCAACCTTAGACTAG
** * *
25292844 GAATGAACTCTGTATGCTTAGAGTGAGGATGAACACCGTATGCCTAAGTCAACCCACGAAACGAG
391 GAATGAACTCCATATGCTTAGACTGAGGATGAACACCGTATGCCTAAGTCAACCAACGAAACGAG
*
25292909 TGTGTGGGCACTCAACCAGTCAGAGAGGCATAATACGCAAATCAGGGATCAGCTCGAT
456 CGTGTGGGCACTCAACCAGTCAGAGAGGCATAATACGCAAATCAGGGATCAGCTCGAT
* * * * *
25292967 CCCCCTCTGCGTGCTGT-TGATCCCGCTGCTGGTCCTGCTGCCATAACCCTCGGTCCGATTGGGG
1 CCCCCTCTGCGTGCT-TCTGATCCCGCTACCGATCCTACTGCCATAACCCTCGATCCGATTGGGG
* * * * *
25293031 CTTAGACATGGAATGAACTCCGTATTCCTAAGCTAACCCATGCAATGAACGTGCGGGCTCTGAGC
65 CTTAGACATGGAATGAACTCCGCATTCCTAAGCCAACCCATGAAACGAACGTACGGGCTCTGAGC
* * * *
25293096 C-AGCCAGAGAGGCAGAATGCGCAAG-TCAGGGATCG-CCCGGTCCCCCTCTGTGTGCTGTCGGT
130 CGA-CCAGAGAGGCAGAATGCGCAAGTTCA-GGATCGACCCAGTCCCCCTCTATATGCTGCCGGT
** * *
25293158 ATTGCTACCACAACCCTC-AGTCTGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGC
193 ACCGCTACCACAACCCTCGAGTC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* *
25293222 CAACCCACGAAAC-GAGTGTGCGGGTGCTCAACCGACCAGG-GAGGCAGAATGCACAAGTCGAAG
257 CAACCCACGAAACGGA-CGTGCGGGTGCTCAACCG-CCAGGAGAGGCAAAATGC-CAAGTCGAAG
* * * ** * * *
25293285 ATC-AGCTCGGTCCCCCCTGCGTGATGTCGATCTTGCTGCCGCAACCCTCGGTCCTGTCCAACCT
319 ATCGA-CCCGATCCCCCCTGCATGATACCGATCCTACTGCCGCAACCCTCGGTCCAGTCCAACCT
* * *
25293349 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCAAC
383 TAGACTAGGAATGAACTCCATATGCTTAGACTGAGGATGAACACCGTATGCCTAAGTCAACCAAC
25293414 GAAACGAGCGTGTGG
448 GAAACGAGCGTGTGG
25293429 ACGCTCAGCT
Statistics
Matches: 392, Mismatches: 62, Indels: 16
0.83 0.13 0.03
Matches are distributed among these distances:
511 5 0.01
512 119 0.30
513 267 0.68
514 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (513 bp):
CCCCCTCTGCGTGCTTCTGATCCCGCTACCGATCCTACTGCCATAACCCTCGATCCGATTGGGGC
TTAGACATGGAATGAACTCCGCATTCCTAAGCCAACCCATGAAACGAACGTACGGGCTCTGAGCC
GACCAGAGAGGCAGAATGCGCAAGTTCAGGATCGACCCAGTCCCCCTCTATATGCTGCCGGTACC
GCTACCACAACCCTCGAGTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGGACGTGCGGGTGCTCAACCGCCAGGAGAGGCAAAATGCCAAGTCGAAGATCGACC
CGATCCCCCCTGCATGATACCGATCCTACTGCCGCAACCCTCGGTCCAGTCCAACCTTAGACTAG
GAATGAACTCCATATGCTTAGACTGAGGATGAACACCGTATGCCTAAGTCAACCAACGAAACGAG
CGTGTGGGCACTCAACCAGTCAGAGAGGCATAATACGCAAATCAGGGATCAGCTCGAT
Found at i:25293351 original size:158 final size:158
Alignment explanation
Indices: 25293031--25293373 Score: 347
Period size: 158 Copynumber: 2.2 Consensus size: 158
25293021 CCGATTGGGG
* * * * * * *
25293031 CTTAGACATGGAATGAACTCCGTATTCCTAAGCTAACCCATGCAATGAACGTGCGGGCTCTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCTCTCAAC
* * * * *
25293096 CAGCCAGAGAGGCAGAATGCGCAAGTCAGGGATCGCCCGGTCCCCCTCTGTGTGCTGTCGGTATT
66 CAGCCAGAGAGGCAGAATGCACAAGTCAGAGATCGCCCGGTCCCCCTCTGCGTGATGTCGATATT
****
25293161 GCTACCACAACCCTCAGTCTGACTGGGG
131 GCTACCACAACCCTCAGTCTGACTCAAC
* **
25293189 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGG-TGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCT-CTCAA
* *
25293253 CC-GACCAGGGAGGCAGAATGCACAAGTC-GAAGATCAGCTCGGTCCCCC-CTGCGTGATGTCGA
65 CCAG-CCAGAGAGGCAGAATGCACAAGTCAG-AGATC-GCCCGGTCCCCCTCTGCGTGATGTCGA
* * * * *
25293315 TCTTGCTGCCGCAACCCTCGGTCCTGTC-CAAC
127 TATTGCTACCACAACCCTCAGT-CTGACTCAAC
*
25293347 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
25293374 TTAGACTGGG
Statistics
Matches: 151, Mismatches: 28, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.03
158 132 0.87
159 15 0.10
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCTCTCAAC
CAGCCAGAGAGGCAGAATGCACAAGTCAGAGATCGCCCGGTCCCCCTCTGCGTGATGTCGATATT
GCTACCACAACCCTCAGTCTGACTCAAC
Found at i:25293376 original size:26 final size:26
Alignment explanation
Indices: 25293347--25293399 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25293337 CCTGTCCAAC
25293347 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25293373 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25293399 C
1 C
25293400 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25294117 original size:26 final size:26
Alignment explanation
Indices: 25294079--25294131 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25294069 GGCTTAAACT
25294079 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25294105 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
25294131 C
1 C
25294132 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25294362 original size:26 final size:26
Alignment explanation
Indices: 25294326--25294379 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
25294316 GTGGGCGTTC
*
25294326 AGCCTGTCGGAGAGGCAGAATGCGCA
1 AGCCGGTCGGAGAGGCAGAATGCGCA
*
25294352 AGCCGGTCGGAGAGGTAGAATGCGCA
1 AGCCGGTCGGAGAGGCAGAATGCGCA
25294378 AG
1 AG
25294380 TCGAGGATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.20, G:0.41, T:0.11
Consensus pattern (26 bp):
AGCCGGTCGGAGAGGCAGAATGCGCA
Found at i:25294988 original size:26 final size:26
Alignment explanation
Indices: 25294959--25295011 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25294949 CCGGTCTGAT
*
25294959 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
25294985 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25295011 C
1 C
25295012 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25295309 original size:355 final size:355
Alignment explanation
Indices: 25294774--25295431 Score: 892
Period size: 355 Copynumber: 1.9 Consensus size: 355
25294764 ACCGGTCCCA
* * *
25294774 CTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAATTCCCTATGCCTAAGCCAATC
1 CTGCCACAACCCTCGATCAGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * * *
25294839 CACGAAACGGGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCACAAGCCAAGGATCGGCC
66 CACGAAACGAGCATGCGGGCACTCAGCCGACAGGAAAGGCAGAATGCACAAGCCAAGGACCGACC
* * * * *
25294904 CGGTCCCCCCTGCATGCTCTCGATCCTACTATCATAACCCTCGATCCGGTCTGATCTTAGACTAG
131 CGATCCACCCTACATGCTCTCGATCCTACTACCATAACCCTCGATCCGGTCCGATCTTAGACTAG
* * * *
25294969 GAATGAACTCTGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGA
196 GAATGAACTCTGTATGCTTAGACAT-CGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAGGA
*
25295033 GCGTGCGAGCGCTCAACCGACCGGAAAGGCATAATACACAAGTCGAGGATCAGCCCGATCCTTCT
260 GCGTGCGAGCGCTCAACCGACCGGAAAGGCAGAATACACAAGTCGAGGATCAGCCCGATCCTTCT
25295098 CTGCTTGCTGCTGATCCCACTGCCAGTCCTG
325 CTGCTTGCTGCTGATCCCACTGCCAGTCCTG
**
25295129 CTGCCACAACCCTCGATCTAG-CTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
1 CTGCCACAACCCTCGATC-AGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* ** * *
25295193 CCATGAAACGAGCATGCGGGCACTCAGCCGGTAGGAAAGGCAGAATGCGCAAG-CAGGGGACCGA
65 CCACGAAACGAGCATGCGGGCACTCAGCCGACAGGAAAGGCAGAATGCACAAGCCA-AGGACCGA
* * * * *
25295257 CCCGATCCACCCTACGTGCTGTCGATCCTGCTACCGTAACCCTCCG-TCCGGTCCGATCTTAGAT
129 CCCGATCCACCCTACATGCTCTCGATCCTACTACCATAACCCT-CGATCCGGTCCGATCTTAGAC
* **
25295321 TGGGAATGAACTCTGTATGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAG
193 TAGGAATGAACTCTGTATGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAG
** * *
25295386 GAGCGTGCGAGCGCTCAGTCGACCGGAGAGGCAGAATGCACAAGTC
258 GAGCGTGCGAGCGCTCAACCGACCGGAAAGGCAGAATACACAAGTC
25295432 AGGGATCGGC
Statistics
Matches: 259, Mismatches: 40, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
354 2 0.01
355 253 0.98
356 4 0.02
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (355 bp):
CTGCCACAACCCTCGATCAGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGAGCATGCGGGCACTCAGCCGACAGGAAAGGCAGAATGCACAAGCCAAGGACCGACC
CGATCCACCCTACATGCTCTCGATCCTACTACCATAACCCTCGATCCGGTCCGATCTTAGACTAG
GAATGAACTCTGTATGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAGGAG
CGTGCGAGCGCTCAACCGACCGGAAAGGCAGAATACACAAGTCGAGGATCAGCCCGATCCTTCTC
TGCTTGCTGCTGATCCCACTGCCAGTCCTG
Found at i:25295708 original size:26 final size:26
Alignment explanation
Indices: 25295670--25295722 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25295660 CTGATCTGAT
25295670 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
25295696 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
25295722 C
1 C
25295723 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25296199 original size:26 final size:26
Alignment explanation
Indices: 25296170--25296222 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25296160 CTGGTCCGAT
25296170 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
25296196 CTTAGACATGGAATTAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25296222 C
1 C
25296223 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25296324 original size:500 final size:500
Alignment explanation
Indices: 25295653--25296748 Score: 1339
Period size: 500 Copynumber: 2.2 Consensus size: 500
25295643 CTATCATAAG
* *
25295653 CCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTG
1 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTG
* * * * * *
25295718 TATGCCTAAACCAACCTATAAAATGAGCGTACGGCGCTCAGCCGATCAGAGAGGCAGAATGCGCA
66 TATGCCTAAGCCAACCAATGAAACGAGCGTACGGCGCTCAGCCAATCAGAGAGGCAGAATGCACA
* * * * * * *
25295783 AGCCAAGGATCGATTTAATCCCACCTTGTGTGCTGTCGATCCTATTGTTGCAACCCTCCA-TCGG
131 AGCCAAGGATCGACTCAATCCCACCCTGTGTGCTATCGATCCTACTATCGCAACCCT-CAGT-GG
** * * *
25295847 GTCTGATCTAAGATTAGGAATGAACTTCGTATGCCTAAGTTAACCCACGAAACGAGCGTTCGGGC
194 GTCAAATCTAAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGC
* * * *
25295912 GCTGAGCTGGTCGGAGAGGCATAATGCGCAAGCTAGGGATCAACCC-AGTCCCCCTCTGCGTGCT
259 GCTGAGCGGGCCGGAGAGGCATAACGCGCAAGCCAGGGATCAACCCGA-TCCCCCTCTGCGTGCT
* * * *
25295976 -ACGGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGGATGAACTCCCTATGCC
323 GACGGTCCCACTGCCACAACCCTCGGTCCAACTGGGGCTGAGACATGGAATGAACTCCCTATGCC
* * ** * * * ** * *
25296040 TAAGCCAACCCACGAAATGGGCATGCAGGTGCTCAACCGATCGGGGAGGCAGAATGCGCTAGTCG
388 TAAGCCAACCCACGAAATGAGCATACAGGCACTCAACCAACCAGAAAGGCAGAATGCCCAAG-CG
* * *
25296105 A-GGTTC-AGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTACCGCAAC
452 AGGGATCGA-CCCGGTCCCCCCTGCATGCTGCCGATCCTACTACCGCAAC
* *
25296153 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATTAACTCTG
1 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTG
*
25296218 TATGCCTAAGCCAACCAATGAAACGAGCGTGCGGGCGCTCAGCCAA-CTAGAGAGGCAGAATGCA
66 TATGCCTAAGCCAACCAATGAAACGAGCGTAC-GGCGCTCAGCCAATC-AGAGAGGCAGAATGCA
* * ** *
25296282 CAAGCCAGGGATTGACTCGGTCCC-CCCTGCT-TGCTATCGATCCTGCTATCGCAACCCTCAGTG
129 CAAGCCAAGGATCGACTCAATCCCACCCTG-TGTGCTATCGATCCTACTATCGCAACCCTCAGTG
* * *
25296345 TGTCAAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTTCGGG
193 GGTCAAATCTAAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGG
* * ** * *
25296410 TGCTGAGCGGGCCGGAGAGGCATAACGCGCAAGCCGGGGATCGGCTCGATCCCCCTCTGTGTGCT
258 CGCTGAGCGGGCCGGAGAGGCATAACGCGCAAGCCAGGGATCAACCCGATCCCCCTCTGCGTGCT
*
25296475 GTCGGTCCCACTGCCACAACCCTCGGTCCAACTGGGGCTGAGACATGGAATGAACTCCCTATGCC
323 GACGGTCCCACTGCCACAACCCTCGGTCCAACTGGGGCTGAGACATGGAATGAACTCCCTATGCC
* * * *
25296540 TAAGCCAACCCATGAAATGAGCGTACAGGCACTCAGCCAACCAGAAAGGCAGAATGCCCAAGCTA
388 TAAGCCAACCCACGAAATGAGCATACAGGCACTCAACCAACCAGAAAGGCAGAATGCCCAAGCGA
** * **
25296605 GGGATCGACTTGGTCCTCCCTGCATGCTGCCGATCCTACTGTCGCAAC
453 GGGATCGACCCGGTCCCCCCTGCATGCTGCCGATCCTACTACCGCAAC
* * * * * *
25296653 CCTCGATCTCGTCTGATCTTAGACTGGGAATAAACTTCATATGCTTAGAC-TGGGGATGAACT-T
1 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCT
* *
25296716 AGTATGCCTAAGTCAACCCATGAAACGAGCGTA
65 -GTATGCCTAAGCCAACCAATGAAACGAGCGTA
25296749 TGGGCACTCA
Statistics
Matches: 506, Mismatches: 80, Indels: 20
0.83 0.13 0.03
Matches are distributed among these distances:
499 117 0.23
500 342 0.68
501 47 0.09
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (500 bp):
CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTG
TATGCCTAAGCCAACCAATGAAACGAGCGTACGGCGCTCAGCCAATCAGAGAGGCAGAATGCACA
AGCCAAGGATCGACTCAATCCCACCCTGTGTGCTATCGATCCTACTATCGCAACCCTCAGTGGGT
CAAATCTAAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGC
TGAGCGGGCCGGAGAGGCATAACGCGCAAGCCAGGGATCAACCCGATCCCCCTCTGCGTGCTGAC
GGTCCCACTGCCACAACCCTCGGTCCAACTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAA
GCCAACCCACGAAATGAGCATACAGGCACTCAACCAACCAGAAAGGCAGAATGCCCAAGCGAGGG
ATCGACCCGGTCCCCCCTGCATGCTGCCGATCCTACTACCGCAAC
Found at i:25298436 original size:26 final size:26
Alignment explanation
Indices: 25298400--25298452 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25298390 CTGGTTCGAT
*
25298400 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAAATTGGGAATGAACTCCGTATG
*
25298426 CTTAAATTGGGGATGAACTCCGTATG
1 CTTAAATTGGGAATGAACTCCGTATG
25298452 C
1 C
25298453 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAAATTGGGAATGAACTCCGTATG
Found at i:25298996 original size:159 final size:158
Alignment explanation
Indices: 25298759--25299117 Score: 393
Period size: 159 Copynumber: 2.3 Consensus size: 158
25298749 TCTACTGTTG
** * **
25298759 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
1 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCCCATGCCTAAGCCAACCCACAAA
* * * * * * *
25298824 ACGAGCGTTCGGGCACTGAGCTGACCGGAGAGGCATAATGCGCAAGTCGGGGAT-TGACCCGGTC
66 ACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGAT-
25298888 CCCCTCTGCGTGTTGCCAGTCCCACTACCA
129 CCCCTCTGCGTGTTGCCAGTCCCACTACCA
*
25298918 CAACCCTCGGTCCAG-CTGGGA-CTTAGACAT-GGAATGAACTCCCCATGCCTAAGCCAACCCGC
1 CAACCCTCGGTCCAGTCT--GATCTTAGAC-TGGGAATGAACTCCCCATGCCTAAGCCAACCCAC
* * *
25298980 AAAATGGGCGTGCGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGA
63 AAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGA
* * * *** ** *
25299045 TCCCCTCTGCGTGCTACCAATTTTACTGTCG
128 TCCCCTCTGCGTGTTGCCAGTCCCACTACCA
* * *
25299076 CAACTCTCAGTTCAGTCTGATCTTAGACTGGGAATGAACTCC
1 CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCC
25299118 GTATGCTTAG
Statistics
Matches: 165, Mismatches: 28, Indels: 15
0.79 0.13 0.07
Matches are distributed among these distances:
157 3 0.02
158 54 0.33
159 104 0.63
160 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCCCATGCCTAAGCCAACCCACAAA
ACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCC
CCTCTGCGTGTTGCCAGTCCCACTACCA
Found at i:25299133 original size:26 final size:26
Alignment explanation
Indices: 25299097--25299171 Score: 134
Period size: 26 Copynumber: 2.9 Consensus size: 26
25299087 TCAGTCTGAT
25299097 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25299123 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
25299149 CTTAGACTGGG-ATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
25299172 CGCCTAAGTC
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 11 0.23
26 36 0.77
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25299229 original size:13 final size:13
Alignment explanation
Indices: 25299211--25299237 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
25299201 CGGGCGCTCA
25299211 GTCGGCTGAAGAG
1 GTCGGCTGAAGAG
25299224 GTCGGCTGAAGAG
1 GTCGGCTGAAGAG
25299237 G
1 G
25299238 CATAATGCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.15, G:0.48, T:0.15
Consensus pattern (13 bp):
GTCGGCTGAAGAG
Found at i:25299763 original size:157 final size:157
Alignment explanation
Indices: 25299481--25299768 Score: 375
Period size: 157 Copynumber: 1.8 Consensus size: 157
25299471 CTGCTACCAT
*
25299481 AACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAA
1 AACCCTCAGTCCGATCCGATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAA
* * * *
25299546 CGAGCGTACAGGTGCTCAGCCGACCGGAGAGGCAAAATGCGCAAGTCAAGGACCGGCCCGATCCC
66 CGAGCGTACAGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAGTCAAGGACCGACCCGATCCC
25299611 CTTGCGTACTGTTGATCCTGCGACCGC
131 CTTGCGTACTGTTGATCCTGCGACCGC
* *
25299638 AACCCTCAGTTTC-ATCCGATCTTAGAATGGGAATGAACTCTGTATGCCTAAG-TCAACCCATGA
1 AACCCTCAG-TCCGATCCGATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCT-AACCCACGA
* * * * * * *** *
25299701 AATGAGCGTGCGGGCGCTGAACC-AGCCGGAGTGGCATAATGCACAAGTTGGGGATCGACCCGAT
64 AACGAGCGTACAGGCGCTCAACCGA-CCGGAGAGGCAAAATGCACAAGTCAAGGACCGACCCGAT
25299765 CCCC
128 CCCC
25299769 CTCTGCGTGC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
156 2 0.02
157 107 0.96
158 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (157 bp):
AACCCTCAGTCCGATCCGATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAA
CGAGCGTACAGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAGTCAAGGACCGACCCGATCCC
CTTGCGTACTGTTGATCCTGCGACCGC
Found at i:25300138 original size:26 final size:26
Alignment explanation
Indices: 25300100--25300152 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25300090 GGCTCAAACT
** * *
25300100 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
25300126 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
25300152 C
1 C
25300153 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:25300353 original size:26 final size:26
Alignment explanation
Indices: 25300315--25300364 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
25300305 GTTCGATCTC
25300315 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
* *
25300341 AGACTGGGGATGAACTTCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
25300365 CTAAATCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:25300866 original size:26 final size:26
Alignment explanation
Indices: 25300837--25300889 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25300827 CCAGTCCGAT
*
25300837 CTTAGAC-TGGGAATTAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
25300863 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25300889 C
1 C
25300890 CTGAGCCAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25308260 original size:157 final size:156
Alignment explanation
Indices: 25307761--25308260 Score: 483
Period size: 157 Copynumber: 3.2 Consensus size: 156
25307751 TTGACTGGGG
* * * * *
25307761 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTACGTAACGAGCGTGCAGGCGCTCAA
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
25307825 CCGATCGGAGAGGCAGAATGTGCAAGTCGAGGATCGGCCTGATCCCCCACTGCGTGCTGTCGAT-
65 CCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCC-GAT-CCCC-CTGCGTGCTGTCGATC
*
25307889 CTTGCT-ACTGTAACCCTCGGTCCGGTCTAAT
127 CTT-CTGAC-GCAACCCTCGGTCCGGTCTAAT
* * * * * *
25307920 CTTAGACTGGGAATAAACTTCGT-TGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTAAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
25307984 CGGTCGAAGAGGCATAAT-CGCAAGCCGGGGATCGGCCCGGTCCACTTCTGCGTACTGTCGATCC
66 CGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGG-CCGATCC-C-CCTGCGTGCTGTCGATCC
* * * ***
25308048 TACTGCCACAACCCTCGGTCCGG-CTGGGG
128 TTCTGACGCAACCCTCGGTCCGGTCT-AAT
* * *
25308077 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
25308141 CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGACTCGATCCCCCTACGTGCTGCCGATCCT
65 CCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGC-CGATCCCCCTGCGTGCTGTCGATCCT
* * *
25308206 TCTGTCGCAACCCTCTGTCCGGTCTTAT
129 TCTGACGCAACCCTCGGTCCGGTCTAAT
* *
25308234 CTTAGATTGGGAATGAACTCTGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
25308261 TTAGACTGGT
Statistics
Matches: 270, Mismatches: 58, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
156 5 0.02
157 119 0.44
158 109 0.40
159 37 0.14
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (156 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCGATCCCCCTGCGTGCTGTCGATCCTTC
TGACGCAACCCTCGGTCCGGTCTAAT
Found at i:25308992 original size:26 final size:26
Alignment explanation
Indices: 25308953--25309004 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25308943 TTGCTCAAAA
25308953 TCTTAGACTGGAAATGAACTCCGTAT
1 TCTTAGACTGGAAATGAACTCCGTAT
25308979 TCTTAGACAT-GAAATGAACTCCGTAT
1 TCTTAGAC-TGGAAATGAACTCCGTAT
25309005 GCCTAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGAAATGAACTCCGTAT
Found at i:25309334 original size:159 final size:158
Alignment explanation
Indices: 25308980--25309395 Score: 387
Period size: 159 Copynumber: 2.6 Consensus size: 158
25308970 ACTCCGTATT
* * *
25308980 CTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
25309045 CGGCCAGAGAGGCAGAATGCTCAAGCCGGGGATTGGCCTAATCCCCCCTATGTGCTGTCGATCCT
66 CGGCCAGAGAGGCAGAATGATAAAGCCGGGGATCAGCCTAATCCCCCCTATGTGCTGACGATCCT
*** * * *
25309110 GCTACTGTAACCCTCGGTTCGGTCCAAT
131 GCTACCACAACCCTCAGTCCGGTCCAAG
* * * * *
25309138 CTTAGAC-TAGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCATGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * **
25309202 CCGGTC-GAAGAGGCATAAT-ATGAAAGCTGGGGATCAGCCTGGTCCCCCTCTATGTGCTGAC-A
65 CCGGCCAG-AGAGGCAGAATGAT-AAAGCCGGGGATCAGCCTAATCCCCC-CTATGTGCTGACGA
* * *
25309264 GT-CTAGCTGCCACAACCCTCAGTCCGG-CTAGGG
127 -TCCT-GCTACCACAACCCTCAGTCCGGTCCA-AG
* * * *
25309297 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * ***
25309362 CGACC-GAAGAGGTAGAATGCGCAAGCCGGGGATC
66 CGGCCAG-AGAGGCAGAATGATAAAGCCGGGGATC
25309396 GACCCAGTCC
Statistics
Matches: 205, Mismatches: 44, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 94 0.46
159 107 0.52
160 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGAGGCAGAATGATAAAGCCGGGGATCAGCCTAATCCCCCCTATGTGCTGACGATCCT
GCTACCACAACCCTCAGTCCGGTCCAAG
Found at i:25309968 original size:375 final size:376
Alignment explanation
Indices: 25309270--25309981 Score: 937
Period size: 375 Copynumber: 1.9 Consensus size: 376
25309260 GACAGTCTAG
*
25309270 CTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACC
* * * * *
25309335 CATGAAATGAGCGTGCAGGCGCTCAACCGACCGAAGAGGTAGAATGCGCAAGCCGGGGATCGACC
66 CACGAAACGAGCGTGCAGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGACCGACC
* * *
25309400 CAGTCCTCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCAGTCCAGTCTGATCTTAGAGTGA
131 CAGTCCTCCCTGCGTGCTGTCGATCCTACTATCGCAACCCTCAGACCAGTCTGATCTTAGACTGA
* * * *
25309465 GAGTGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAG
196 GAATGAACTTCGTACGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* *
25309530 CGTCCGAGCGCAAAGCCGATCGGAGAGGCATAATGCGTAAGCCGAGGATCAACCCGATCCCCCTC
261 CGTCCGAGCGCAAAGCCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCAACCCGATCCCCCTC
25309595 TGCATGCTGCCAATTTCGCTGTCGATCCTGCTACCACAACCCTCGGTCTGA
326 TGCATGCTGCCAATTTCGCTGTCGATCCTGCTACCACAACCCTCGGTCTGA
* * *
25309646 CTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACC
* * *** * * *** *
25309711 CACGAAACGGGCGTGCGGGCACTCAGTTGGCCGGAGAGGCA-AATTTTCAAGCCGGGGACCG-GC
66 CACGAAACGAGCGTGCAGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGACCGACC
** * * * *
25309774 TTGATCC-CCTCTGTGTGCTGTCGATCCTGCTATCGCAACCCTCGGACCGGTCTGATCTTAGACT
131 CAG-TCCTCC-CTGCGTGCTGTCGATCCTACTATCGCAACCCTCAGACCAGTCTGATCTTAGACT
* ** *
25309838 GGGAATGAAC-TCTGTACGCTTAGACTAGGGATGAACTCCGTATTTCTAAGTCAACCCATGAAAC
194 GAGAATGAACTTC-GTACGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
** * ** * * *
25309902 GAGCGTGTGGGCGCTCAGCCGACCGGAGAGGCATAATGCGCAAGTCGAGGATCAACCTGGTCCCC
258 GAGCGTCCGAGCGCAAAGCCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCAACCCGATCCCC
*
25309967 CTCTGCGTGCTGCCA
323 CTCTGCATGCTGCCA
25309982 CAACCCTCGG
Statistics
Matches: 285, Mismatches: 48, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
374 6 0.02
375 188 0.66
376 91 0.32
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (376 bp):
CTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGAGCGTGCAGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGACCGACC
CAGTCCTCCCTGCGTGCTGTCGATCCTACTATCGCAACCCTCAGACCAGTCTGATCTTAGACTGA
GAATGAACTTCGTACGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTCCGAGCGCAAAGCCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCAACCCGATCCCCCTC
TGCATGCTGCCAATTTCGCTGTCGATCCTGCTACCACAACCCTCGGTCTGA
Found at i:25310212 original size:26 final size:26
Alignment explanation
Indices: 25310174--25310224 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25310164 CAGTTTGATC
25310174 TTAGACTGCGAATCAACTCCGTATGG
1 TTAGACTGCGAATCAACTCCGTATGG
* *
25310200 TTAGACATG-GAATGAACTTCGTATG
1 TTAGAC-TGCGAATCAACTCCGTATG
25310225 CTTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGCGAATCAACTCCGTATGG
Found at i:25310612 original size:159 final size:158
Alignment explanation
Indices: 25310200--25310660 Score: 442
Period size: 159 Copynumber: 2.9 Consensus size: 158
25310190 CTCCGTATGG
* * * * * *
25310200 TTAGACATGGAATGAACTTCGTATGCTTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGTC
1 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCC
* * * * * * * *
25310265 GACCGGAGAGGCAGAATGTGCAAGCCTGAGACCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
66 GACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGACCCCG
** * *
25310330 CTACTGCAACCCTCGGTCCGGTCTGATC
131 CTACCACAACCCTCAGTCCGGTCTGAGC
* ** *
25310358 TTAGAC-TGGGAATGAACTTCGTATGCCTAA-CTCAACCCATGAAACAAGCGTAAGGGTGCTGAG
1 TTAGACAT-GGAATGAACTTCGTATGCCTAAGC-CAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * ** * *
25310421 CCGACCGAAGAGGCATAATGCGCAGGGTGGGGATTGACCCGATCCCCCTCTGCGTGCTATCGGCC
64 CCGACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTATCGACC
* * *
25310486 CCGTTACCACAACCCTCAGTCTGG-CTGGGGC
128 CCGCTACCACAACCCTCAGTCCGGTCT-GAGC
* * * *
25310517 TTAGACATGGAATGACCTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCC
* * * * * * * * **
25310582 TATCGAAGAGGCAGATTGTGCAAGCCGGGGATCGACTCGATCCCTCATGCGTGCTGTCGATCCTA
66 GACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGACCCCG
*
25310647 CTACCGCAACCCTC
131 CTACCACAACCCTC
25310661 GATCCGATCT
Statistics
Matches: 238, Mismatches: 59, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 113 0.47
159 121 0.51
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCC
GACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGACCCCG
CTACCACAACCCTCAGTCCGGTCTGAGC
Found at i:25311059 original size:26 final size:25
Alignment explanation
Indices: 25311030--25311081 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
25311020 CTGGTCCGAT
25311030 CTTAGAC-TTGAAATGAACTCCGTATG
1 CTTAGACATTG-AATGAA-TCCGTATG
25311056 CTTAGACATTGAATGAATCCGTATG
1 CTTAGACATTGAATGAATCCGTATG
25311081 C
1 C
25311082 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 9 0.36
26 13 0.52
27 3 0.12
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (25 bp):
CTTAGACATTGAATGAATCCGTATG
Found at i:25311446 original size:158 final size:157
Alignment explanation
Indices: 25311056--25311499 Score: 434
Period size: 159 Copynumber: 2.8 Consensus size: 157
25311046 ACTCCGTATG
* * * *
25311056 CTTAGACATTGAATGAATCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCT-CTCAGC
1 CTTAGACATGGAATGAATCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGG-TGCTCAGC
* * * * * *
25311120 TGGCCGGAGAGGCAGAATGCGTAAGTCGGGGACCGGCCCGATCCCCCCCTACGTGCTATCC-ATC
65 TGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGAT-CCCCCCTACGTGCT-GCCGATC
* ** * * * *
25311184 CTGCTACCGTAACCTTCGGTTCGGTCTAAT
128 CCGCTACCACAACCCTCAGTCCGATCTAAT
* * * * *
25311214 CTTAGA-ATGGGAATAAAGTTCGTATGCCTAA-CTCAACCCATGAAACGAGCGTACGGGCGCTAA
1 CTTAGACAT-GGAATGAA-TCCGTATGCCTAAGC-CAACCCACGAAACGAGCGTACGGGTGCTCA
* * * * *
25311277 GCTGGTTGGAGAGGCATAATGTGCAAGCCGGGGATCGACCCAATCCGCCTCTACGTGCTGCCGAT
63 GCTGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC-CCCCTACGTGCTGCCGAT
**
25311342 CCCGCTACCACAACCCTCAGTCCGAT-TGGT
127 CCCGCTACCACAACCCTCAGTCCGATCTAAT
* * * *
25311372 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGGGTACGGGTGCTCAG-
1 CTTAGACATGGAATGAA-TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGC
* *
25311436 TCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATC-AGCCCGGTCCCCCCTACGTGCTGCCGATC
65 T-GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCCTACGTGCTGCCGATC
25311500 GTGCTATGGC
Statistics
Matches: 230, Mismatches: 46, Indels: 21
0.77 0.15 0.07
Matches are distributed among these distances:
157 22 0.10
158 103 0.45
159 105 0.46
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAATCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAGCT
GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGCCGATCCCG
CTACCACAACCCTCAGTCCGATCTAAT
Found at i:25311533 original size:158 final size:158
Alignment explanation
Indices: 25311056--25311556 Score: 461
Period size: 158 Copynumber: 3.2 Consensus size: 158
25311046 ACTCCGTATG
* * * *
25311056 CTTAGACAT-TGAATGAA-TCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCT-CTCA
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGG-TGCTCA
* * * *
25311118 GCTGGCCGGAGAGGCAGAATGCGTAAG-TCGGGGACCGGCCCGATCCCCCCCTACGTGCTATCC-
65 GCTGGTCGGAGAGGCAGAATGCGCAAGCT-GGGGATC-GCCCGAT-CCCCCCTACGTGCT-GCCG
*
25311181 ATCCTGCTACCGTAA-CCTTCGGT-TCGGTCTAAT
126 ATCCTGCTACCGCAACCCTT-GGTCT-GGTCTAAT
* * * * * *
25311214 CTTAGA-ATGGGAATAAAGTTCGTATGCCTAA-CTCAACCCATGAAACGAGCGTACGGGCGCTAA
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAACGAGCGTACGGGTGCTCA
* * * * * *
25311277 GCTGGTTGGAGAGGCATAATGTGCAAGCCGGGGATCGACCCAATCCGCCTCTACGTGCTGCCGAT
65 GCTGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCG-CCCGATCC-CCCCTACGTGCTGCCGAT
* * ** * * **
25311342 CCCGCTACCACAACCCTCAGTCCGAT-TGGT
128 CCTGCTACCGCAACCCTTGGTCTGGTCTAAT
* * * *
25311372 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACGGGGGTACGGGTGCTCAG
1 CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
*
25311436 -TCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCCCCCCTACGTGCTGCCGATC
66 CT-GGTCGGAGAGGCAGAATGCGCAAGCTGGGGATC-GCCCGATCCCCCCTACGTGCTGCCGATC
* **
25311500 GTGCTATGGCAACCCTTGGTCTGGTCTAAT
129 CTGCTACCGCAACCCTTGGTCTGGTCTAAT
*
25311530 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACATGGGAATGAACTCCGTATGC
25311557 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 58, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
157 38 0.14
158 129 0.48
159 99 0.37
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
CTGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGCCCGATCCCCCCTACGTGCTGCCGATCCT
GCTACCGCAACCCTTGGTCTGGTCTAAT
Found at i:25311566 original size:26 final size:25
Alignment explanation
Indices: 25311530--25311608 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 25
25311520 CTGGTCTAAT
25311530 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGG-ATGAACTTCGTATG
*
25311556 CTTAGACTGGGGATGAAC-TCTATATG
1 CTTAGACT-GGGATGAACTTC-GTATG
*
25311582 CTTAGACTGGTGATGAACTCCGTATG
1 CTTAGACTGG-GATGAACTTCGTATG
25311608 C
1 C
25311609 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
25 4 0.09
26 38 0.83
27 4 0.09
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTTCGTATG
Found at i:25312826 original size:26 final size:26
Alignment explanation
Indices: 25312790--25312844 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
25312780 TCGGTTCGAT
*
25312790 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25312816 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25312842 CTT
1 CTT
25312845 GAGCCAACCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25312948 original size:184 final size:185
Alignment explanation
Indices: 25312755--25313189 Score: 425
Period size: 196 Copynumber: 2.3 Consensus size: 185
25312745 CACGTGCTGT
25312755 CGATCCTGCTGCCGCAACCCTCGGTTCGGTTCGATCTTAGACTGGGAATGAACTCT-GTATGCTT
1 CGATCCTGCTGCCGCAACCCTCGGTTCGGTTCGATCTTAGACTGGGAATGAACTCTCGTATGCTT
* * *
25312819 AGA-TTGGGGATGAACTCCGTATG-CTTGAGCCAACCCACGAAACCAGCATGCAGGTGCTCAGCC
66 AGACAT-GGAATGAACTCCGTATGCCTT-AGCCAACACACGAAACCAGCATGCAGGTGCTCAGCC
* * * * * * *
25312882 AACTGGAGAGGCAGATTGCGCAAG-TCGGGGATCGACTCAGTCCCCCCTGCGTGCTAC
129 AACCGGAGAGGCAGAATGCACAAGCT-AGGGACCGACCCAGTCCCCCCTGCATGCTAC
* * *
25312939 CGATCCTGCTGTTGGTATTGCTGCCGCAACCCTCAG-TCTGG-TCTGATCTTAGACCGGGAATTA
1 CGAT-C--C---------TGCTGCCGCAACCCTCGGTTC-GGTTC-GATCTTAGACTGGGAATGA
* * * *
25313002 ACT-TCGTATGCTTAGACATGGAATGAACTCTGTATGCCTTAGCCAACACACGACACGAGCGTGC
52 ACTCTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTTAGCCAACACACGAAACCAGCATGC
* * *
25313066 TGGTGCTCAGCCAACCGGAGAGGCAGAATGCATAAGCTAGGGACCGACCCGGTCCCCCCTGCATG
117 AGGTGCTCAGCCAACCGGAGAGGCAGAATGCACAAGCTAGGGACCGACCCAGTCCCCCCTGCATG
**
25313131 CTGT
182 CTAC
* * * * *
25313135 CGATCATGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTC
1 CGATCCTGCTGCCGCAACCCTCGGTTCGGTTCGATCTTAGACTGGGAATGAACTC
25313190 CTTAGGCCTA
Statistics
Matches: 200, Mismatches: 30, Indels: 41
0.74 0.11 0.15
Matches are distributed among these distances:
184 41 0.20
185 3 0.01
187 1 0.00
195 6 0.03
196 144 0.72
197 5 0.03
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (185 bp):
CGATCCTGCTGCCGCAACCCTCGGTTCGGTTCGATCTTAGACTGGGAATGAACTCTCGTATGCTT
AGACATGGAATGAACTCCGTATGCCTTAGCCAACACACGAAACCAGCATGCAGGTGCTCAGCCAA
CCGGAGAGGCAGAATGCACAAGCTAGGGACCGACCCAGTCCCCCCTGCATGCTAC
Found at i:25313024 original size:26 final size:27
Alignment explanation
Indices: 25312986--25313043 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
25312976 CTGGTCTGAT
* *
25312986 CTTAGACCGGGAATTAACT-TCGTATG-
1 CTTAGACAGGGAATGAACTCT-GTATGC
*
25313012 CTTAGACATGGAATGAACTCTGTATGC
1 CTTAGACAGGGAATGAACTCTGTATGC
25313039 CTTAG
1 CTTAG
25313044 CCAACACACG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (27 bp):
CTTAGACAGGGAATGAACTCTGTATGC
Found at i:25313123 original size:196 final size:196
Alignment explanation
Indices: 25312761--25313132 Score: 468
Period size: 196 Copynumber: 1.9 Consensus size: 196
25312751 CTGTCGATCC
* * *
25312761 TGCTGCCGCAACCCTCGGTTCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGG
1 TGCTGCCGCAACCCTCAGTTCGGTTCGATCTTAGACCGGGAATGAACTCTGTATGCTTAGAATGG
* * *
25312826 GGATGAACTCCGTATGCTTGAGCCAACCCACGAAACCAGCATGCAGGTGCTCAGCCAACTGGAGA
66 GAATGAACTCCGTATGCTTGAGCCAACACACGAAACCAGCATGCAGGTGCTCAGCCAACCGGAGA
* * * * * *
25312891 GGCAGATTGCGCAAGTCGGGGATCGACTCAGTCCCCCCTGCGTGCTACCGATCCTGCTGTTGGTA
131 GGCAGAATGCACAAGTCAGGGACCGACCCAGTCCCCCCTGCATGCTACCGATCCTGCTGTTGGTA
25312956 T
196 T
*
25312957 TGCTGCCGCAACCCTCAG-TCTGG-TCTGATCTTAGACCGGGAATTAACT-TCGTATGCTTAGAC
1 TGCTGCCGCAACCCTCAGTTC-GGTTC-GATCTTAGACCGGGAATGAACTCT-GTATGCTTAGA-
* * * * *
25313019 AT-GGAATGAACTCTGTATGCCTT-AGCCAACACACGACACGAGCGTGCTGGTGCTCAGCCAACC
62 ATGGGAATGAACTCCGTATG-CTTGAGCCAACACACGAAACCAGCATGCAGGTGCTCAGCCAACC
* *
25313082 GGAGAGGCAGAATGCATAAG-CTAGGGACCGACCCGGTCCCCCCTGCATGCT
126 GGAGAGGCAGAATGCACAAGTC-AGGGACCGACCCAGTCCCCCCTGCATGCT
25313133 GTCGATCATG
Statistics
Matches: 150, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
195 6 0.04
196 140 0.93
197 4 0.03
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.22
Consensus pattern (196 bp):
TGCTGCCGCAACCCTCAGTTCGGTTCGATCTTAGACCGGGAATGAACTCTGTATGCTTAGAATGG
GAATGAACTCCGTATGCTTGAGCCAACACACGAAACCAGCATGCAGGTGCTCAGCCAACCGGAGA
GGCAGAATGCACAAGTCAGGGACCGACCCAGTCCCCCCTGCATGCTACCGATCCTGCTGTTGGTA
T
Found at i:25313358 original size:159 final size:158
Alignment explanation
Indices: 25313071--25313506 Score: 442
Period size: 159 Copynumber: 2.8 Consensus size: 158
25313061 CGTGCTGGTG
* ** ** ** * * * *
25313071 CTCAGCCAACCGGAGAGGCAGAATGCATAAGCTAGGGACCGACCCGGTCCCCCCTGCATGCTGTC
1 CTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCCCCCCTGCGTGTTGCC
* ** * * * *
25313136 GATCATGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCTTAGGCCTAA
66 GGTCCCGCTGCCACAACCCTCGGTCCGGTCCGAGCTTAGATTGGGAATGAACTCCCTAGGCCTAA
* *
25313201 GTCAACCCACGAAACAAGTGTGCGGGCA
131 GCCAACCCACAAAACAAGTGTGCGGGCA
* * * *
25313229 CTGAGCCAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGTTGC
1 CTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCCCCC-CTGCGTGTTGC
** * * *
25313294 CGGTCCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGATAT-GTAATGAACTCCCTATGCCT
65 CGGTCCCGCTGCCACAACCCTCGGTCCGGTCCGAGCTTAGAT-TGGGAATGAACTCCCTAGGCCT
***
25313358 AAGCCAACCCACAAAATGGGTGTGCGGGCA
129 AAGCCAACCCACAAAACAAGTGTGCGGGCA
* * **
25313388 CTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCCCCCCTGCGTGCTATC
1 CTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCCCCCCTGCGTGTTGCC
* ** * * * * * *
25313453 GATCCCGCTATCGCAACCCTCGATCCGGTCTGATCCTAGACTGGGAATGAACTC
66 GGTCCCGCTGCCACAACCCTCGGTCCGGTCCGAGCTTAGATTGGGAATGAACTC
25313507 TGTATGCTTA
Statistics
Matches: 225, Mismatches: 50, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
157 1 0.00
158 92 0.41
159 131 0.58
160 1 0.00
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
CTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCCCCCCTGCGTGTTGCC
GGTCCCGCTGCCACAACCCTCGGTCCGGTCCGAGCTTAGATTGGGAATGAACTCCCTAGGCCTAA
GCCAACCCACAAAACAAGTGTGCGGGCA
Found at i:25313518 original size:26 final size:26
Alignment explanation
Indices: 25313489--25313539 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25313479 GGTCTGATCC
*
25313489 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
25313515 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
25313540 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:25314248 original size:26 final size:26
Alignment explanation
Indices: 25314210--25314262 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25314200 GGCTCAAAAT
25314210 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
25314236 CTTAGAC-ATGGAATGACCTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
25314262 C
1 C
25314263 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25314566 original size:185 final size:185
Alignment explanation
Indices: 25314208--25314606 Score: 410
Period size: 185 Copynumber: 2.2 Consensus size: 185
25314198 ATGGCTCAAA
* * *
25314208 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGACCTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTTGGAATGAACTCCGTATGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * ** * * **
25314273 CCATAAAATGAGCATGTAGGAGCTCAACCGGCCGGAGAGGCAGAATGCACAAGCTGGGGATCAGC
66 CCACAAAACGAGCATACAGGAGCTCAACCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCAGC
* * * * *
25314338 CCGGTCCCTCCCCACGTGCTATCGATCCTACTGCCGTAACCCTCGGTCTGGTCT-G
131 CCGGTCCCTCCCCACATGCTATCCATCCCACTACCGTAACCCTCGGTCCGG-CTGG
* *
25314393 ATCTTAGACTTGGAATGAACTCCGTATGCTTACAC-TGGGGATGAACTCCGTATGCCTAAGTCAA
1 ATCTTAGACTTGGAATGAACTCCGTATGCTTACACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * *
25314457 CCCACGAAACGAGCATACGGGCGTTGAGCCGACCGAAGAGGCATAATGCGCAAGCCATGGATCAG
65 CCCACAAAACGAGCATACAGGAGCTCAACCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCAG
* * * *
25314522 CCTGGTCCC-CCTCTACATGCTGTCCATCCCGCTACCAG-AACCCTCGGTCCGGCTGG
130 CCCGGTCCCTCC-CCACATGCTATCCATCCCACTACC-GTAACCCTCGGTCCGGCTGG
** * * *
25314578 GGCTAAGACATGGAATGAACTCCCTATGC
1 ATCTTAGACTTGGAATGAACTCCGTATGC
25314607 CTAAGCTAAC
Statistics
Matches: 174, Mismatches: 36, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
184 5 0.03
185 168 0.97
186 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (185 bp):
ATCTTAGACTTGGAATGAACTCCGTATGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACAAAACGAGCATACAGGAGCTCAACCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCAGC
CCGGTCCCTCCCCACATGCTATCCATCCCACTACCGTAACCCTCGGTCCGGCTGG
Found at i:25314759 original size:157 final size:160
Alignment explanation
Indices: 25314433--25314836 Score: 438
Period size: 157 Copynumber: 2.5 Consensus size: 160
25314423 TACACTGGGG
* * * * *** * * * *
25314433 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATAC-GGGCGTTGAGCCGACCGAAGAG
1 ATGAAATCCCTATGCCTAAGCCAACCCACGAAACGGGCGCGCAGGGCGCTCAGCCGGCCGGAGAG
* * * *
25314497 GCATAATGCGCAAGCCATGGATCAGCCTGGTCCCCCTCTACATGCTGTCCATCCCGCTACCAGAA
66 GCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTACATGCTGTCCATCCCGCTACCACAA
*
25314562 CCCTCGGTCCGGCTGGGGCTAAGACATGGA
131 CCCTCAGTCCGGCTGGGGCTAAGACATGGA
* * * * * *
25314592 ATGAACTCCCTATGCCTAAGCTAACCCACGAAATGGGCGCGC-GGGCGCTTAGCTGGCCGGATAG
1 ATGAAATCCCTATGCCTAAGCCAACCCACGAAACGGGCGCGCAGGGCGCTCAGCCGGCCGGAGAG
* * * * * *
25314656 GCAGAATGGGCAA-CCAGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGATCCCGCTGCCACAG
66 GCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTACATGCTGTCCATCCCGCTACCACAA
* * **
25314719 CCCTCAGTCTGGCTGGGGCTTAGATGTGGA
131 CCCTCAGTCCGGCTGGGGCTAAGACATGGA
* * * *
25314749 ATGAAATCCCTATGCCTCAGCCAACCCACGAAACGGGTGTGCAGGGCGCTCAGCCGGTCGGAGAG
1 ATGAAATCCCTATGCCTAAGCCAACCCACGAAACGGGCGCGCAGGGCGCTCAGCCGGCCGGAGAG
* *
25314814 GCAGAATGCACAAGCCAAGGATC
66 GCAGAATGCGCAAGCCAGGGATC
25314837 GGCTCGATCC
Statistics
Matches: 201, Mismatches: 42, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
157 83 0.41
158 49 0.24
159 69 0.34
ACGTcount: A:0.24, C:0.31, G:0.29, T:0.16
Consensus pattern (160 bp):
ATGAAATCCCTATGCCTAAGCCAACCCACGAAACGGGCGCGCAGGGCGCTCAGCCGGCCGGAGAG
GCAGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTACATGCTGTCCATCCCGCTACCACAA
CCCTCAGTCCGGCTGGGGCTAAGACATGGA
Found at i:25314887 original size:158 final size:157
Alignment explanation
Indices: 25314433--25314888 Score: 412
Period size: 158 Copynumber: 2.9 Consensus size: 157
25314423 TACACTGGGG
* * * * *** * * * *
25314433 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGTTGAGCCGACCGAAGAGG
1 ATGAAATCCCTATGCCTAAGCCAACCCACGAAACGGGCGCGCGGGCGCTCAGCCGGCCGGAGAGG
* * * * * * * * * *
25314498 CATAATGCGCAAGCCATGGATCAGCCTGGTCCCCCTCTACATGCTGTCC-ATCCCGCTACCAGAA
66 CAGAATGCACAA-CCAAGGATCAGCCCGATCCCCC-CTGCGTGCT-ACCGATCCCGCTGCCACAA
*
25314562 CCCTCGGTCCGGCTGGGGCTAAGACATGGA
128 CCCTCGGTCTGGCTGGGGCTAAGACATGGA
* * * * * *
25314592 ATGAACTCCCTATGCCTAAGCTAACCCACGAAATGGGCGCGCGGGCGCTTAGCTGGCCGGATAGG
1 ATGAAATCCCTATGCCTAAGCCAACCCACGAAACGGGCGCGCGGGCGCTCAGCCGGCCGGAGAGG
** * * ** *
25314657 CAGAATGGGCAACCAGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCCGCTGCCACAGCCC
66 CAGAATGCACAACCAAGGATCAGCCCGATCCCCCCTGCGTGCTACCGATCCCGCTGCCACAACCC
* * **
25314722 TCAGTCTGGCTGGGGCTTAGATGTGGA
131 TCGGTCTGGCTGGGGCTAAGACATGGA
* * * *
25314749 ATGAAATCCCTATGCCTCAGCCAACCCACGAAACGGGTGTGCAGGGCGCTCAGCCGGTCGGAGAG
1 ATGAAATCCCTATGCCTAAGCCAACCCACGAAACGGGCGCGC-GGGCGCTCAGCCGGCCGGAGAG
* * * * * *
25314814 GCAGAATGCACAAGCCAAGGATCGGCTCGAT-CCCTCTGCGTGCTACCGATCCTGCTGTCGCAAC
65 GCAGAATGCACAA-CCAAGGATCAGCCCGATCCCCCCTGCGTGCTACCGATCCCGCTGCCACAAC
25314878 CCTCGGTCTGG
129 CCTCGGTCTGG
25314889 TCTGATCTTA
Statistics
Matches: 240, Mismatches: 54, Indels: 7
0.80 0.18 0.02
Matches are distributed among these distances:
156 1 0.00
157 80 0.33
158 85 0.35
159 74 0.31
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (157 bp):
ATGAAATCCCTATGCCTAAGCCAACCCACGAAACGGGCGCGCGGGCGCTCAGCCGGCCGGAGAGG
CAGAATGCACAACCAAGGATCAGCCCGATCCCCCCTGCGTGCTACCGATCCCGCTGCCACAACCC
TCGGTCTGGCTGGGGCTAAGACATGGA
Found at i:25314931 original size:26 final size:26
Alignment explanation
Indices: 25314895--25314947 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25314885 CTGGTCTGAT
25314895 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
25314921 CTTAGATTAGGGATGACCTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25314947 C
1 C
25314948 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25315305 original size:26 final size:26
Alignment explanation
Indices: 25315276--25315325 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
25315266 CCGATCCAAT
25315276 CTTAGAC-TGGGAATGAACTCCGTACG
1 CTTAGACAT-GGAATGAACTCCGTACG
25315302 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
25315326 TGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTACG
Found at i:25315650 original size:159 final size:158
Alignment explanation
Indices: 25315301--25315731 Score: 469
Period size: 159 Copynumber: 2.7 Consensus size: 158
25315291 AACTCCGTAC
* * * *
25315301 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCCGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTGAG
* * * * *
25315366 CC-GATCGGAGAGGCAGAATGCGTGAGTCGAGGATCGGCTCGATCCCCCCTGCGTGCTGTCGATC
66 CCAG-TCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATC
*** **
25315430 TTGCTACCGTAACCCTCGGTCTGGTCTGA
130 CCACTACCACAACCCTCGGTCTGGTCTGA
* *
25315459 TCTTAGACTAT-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGA
1 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTGA
* * * * * * *
25315523 GCCAGCCGGAGAGGCATAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTCTGCGTGCTATTGGT
65 GCCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTATCGAT
* *
25315588 CCCACTGCCACAACCCTTGGTCTGG-CT-A
129 CCCACTACCACAACCCTCGGTCTGGTCTGA
* * * * * *
25315616 CGGCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTC
1 --GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCT-
* *
25315681 GA-CCAATCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGA-CCCCCCT
63 GAGCCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCT
25315732 TACGTGCTGC
Statistics
Matches: 226, Mismatches: 40, Indels: 15
0.80 0.14 0.05
Matches are distributed among these distances:
157 3 0.01
158 102 0.45
159 119 0.53
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTGAG
CCAGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
CACTACCACAACCCTCGGTCTGGTCTGA
Found at i:25316076 original size:511 final size:513
Alignment explanation
Indices: 25315081--25316231 Score: 1530
Period size: 511 Copynumber: 2.2 Consensus size: 513
25315071 AGTTCTGCTA
* * ** *
25315081 CCACAACCCTCGGTCCGACTGGGGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCATCGGTCCGGCTACGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * * *
25315146 GAAACGAGCGTTCGGGCTCTCAACCGGCTGGAGAGGCAGAATGTGCAAGCCGAGGACCGACCCAG
66 GAAACGAGCGTACGGGCACTCAACCGTC-GGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAG
* * * * *
25315211 TCCCCCCTTGCGTGTTGCAGATCTTGTTATTGGTCCTTCTACCGCAACCCTCGTTCCGATCCAAT
130 ACCCCCCTTACGTGCTGCAGATCCTGTTATTGGTCCTTCTACCACAACCCTCGTTCCGATCCAAT
25315276 CTTAGACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
195 CTTAGACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * *
25315341 ACGAAATAAGCGTGCCGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTGAGTCGAGGATCGGCTC
260 ACGAAACAAGCGTGCCGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTGAATCGAGGACCGGCTC
* * *
25315406 GATCCCCCCTGCGTGCTGTCGATCTTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTATG
325 GATCCCCCCTACGTGCTGTCGATCTTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACCAGG
* *
25315471 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGCCAGCCGGAGAG
390 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGCCAGCCAGAAAG
* *
25315536 GCATAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTCTGCGTGCTATTGGTCCCACTG
455 GCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGGTCCCACTG
* * * * *
25315595 CCACAACCCTTGGTCTGGCTACGGCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCATCGGTCCGGCTACGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * *
25315660 GAAACGGGCGTACGGGCACTCGACCAATCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCC-G
66 GAAACGAGCGTACGGGCACTCAACC-GTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAG
* *
25315724 ACCCCCCTTACGTGCTGCCA-ATCCTGTTGTTGGTCCTGT-TACTACAACCCTCAG-TCC-AGTC
130 ACCCCCCTTACGTGCTG-CAGATCCTGTTATTGGTCCT-TCTACCACAACCCTC-GTTCCGA-TC
* * * **
25315785 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCATGGAATGAACTTTGTATGCCTAAGCCA
191 CAATCTTAGACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* ** * *
25315850 ACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGT-AATCGGGGACCG
256 ACCCACGAAACAAGCGTGCCGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTGAATCGAGGACCG
* * *
25315914 G-TCTGGT-CCCCGTACGTGCTGTCGATCTTGCTACCGTAACCCTCGGTCTGGTTTGATCTTAGA
321 GCTC-GATCCCCCCTACGTGCTGTCGATCTTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGA
* * * * * *
25315977 CCGGGAATGAACTCCGTATGCCTAAG-CTAACCCATGAAATGAGTGTCCGGGCGCTGA-TCTGAC
385 CCAGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAATGAGCGTACGGGCGCTGAGCCAG-C
* **
25316040 CAGAAAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTATCGGTCCTGCT
448 CAGAAAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGGTCCCACT
25316105 G
513 G
* ** *
25316106 CCACAACCATCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCAT
1 CCACAACCATCGGTCCGGCTACGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * *
25316171 GAAACGAGCGTACGGGCGCTCAACCGGTGGGAGAGGCAGAATGCGTAAGCTGGGGATCGAC
66 GAAACGAGCGTACGGGCACTCAACC-GTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGAC
25316232 TTGGTCCCCC
Statistics
Matches: 552, Mismatches: 77, Indels: 19
0.85 0.12 0.03
Matches are distributed among these distances:
510 3 0.01
511 272 0.49
512 13 0.02
513 153 0.28
514 110 0.20
515 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (513 bp):
CCACAACCATCGGTCCGGCTACGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
GAAACGAGCGTACGGGCACTCAACCGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCAGA
CCCCCCTTACGTGCTGCAGATCCTGTTATTGGTCCTTCTACCACAACCCTCGTTCCGATCCAATC
TTAGACTGGGAATGAACTCCGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
CGAAACAAGCGTGCCGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTGAATCGAGGACCGGCTCG
ATCCCCCCTACGTGCTGTCGATCTTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACCAGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGCCAGCCAGAAAGG
CATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGGTCCCACTG
Found at i:25316157 original size:159 final size:159
Alignment explanation
Indices: 25315971--25316409 Score: 520
Period size: 159 Copynumber: 2.8 Consensus size: 159
25315961 CTGGTTTGAT
** * * * * *
25315971 CTTAGACCGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGTGTCCGGGCGCTGATC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAAC
* * * * *
25316036 TGACCAGAAAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTATCGGTCC
66 CGACCAGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGGTCC
*
25316101 TGCTGCCACAACCATCGGTCCGGTTGGGG
131 TGCTGCCACAACCATCAGTCCGGTTGGGG
* *
25316130 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAAC
**** * * * ** *
25316195 CGGTGGGAGAGGCAGAATGCGTAAGCTGGGGATCGACTTGGTCCCCCTCTGCGTGCTGCCGGTCC
66 CGACCAGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGGTCC
* *
25316260 TGCTGCCACAACCCTCAGTTCGGTTGGGG
131 TGCTGCCACAACCATCAGTCCGGTTGGGG
* * * * *
25316289 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAAC
* * ** * **
25316354 CGGCCAGAGAGGCAGAATGCATAAGTCGGGGATCGACCCAATCCCCC-CTGCGTGCT
66 CGACCAGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCT
25316410 GTTGATCCTG
Statistics
Matches: 236, Mismatches: 44, Indels: 1
0.84 0.16 0.00
Matches are distributed among these distances:
158 9 0.04
159 227 0.96
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAAC
CGACCAGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGGTCC
TGCTGCCACAACCATCAGTCCGGTTGGGG
Found at i:25317384 original size:26 final size:26
Alignment explanation
Indices: 25317343--25317395 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25317333 TCGGTCCATT
25317343 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25317369 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
25317395 C
1 C
25317396 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25317450 original size:13 final size:13
Alignment explanation
Indices: 25317432--25317458 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
25317422 CGGGCGCTCA
25317432 GTCGGTCGGAGAG
1 GTCGGTCGGAGAG
25317445 GTCGGTCGGAGAG
1 GTCGGTCGGAGAG
25317458 G
1 G
25317459 CAGAATGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.56, T:0.15
Consensus pattern (13 bp):
GTCGGTCGGAGAG
Found at i:25318489 original size:513 final size:511
Alignment explanation
Indices: 25317498--25318533 Score: 1175
Period size: 513 Copynumber: 2.0 Consensus size: 511
25317488 TCCCTTCTAC
* * * * * * * * * * *
25317498 GTGCTATTGATCCTGCTGCTAGTCTTGTTGTTGCAACCCTCAG-TCTGATCCGATCTTCGACTAG
1 GTGCTATCGATCCTGTTACTGGTCCTGTTGTCGCAACCCTCGGTTCAG-TCTGATCTTAGACTGG
* * ** * *
25317562 GAATGAACTTCGCATGGTTAGAGATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAA
65 GAAGGAACTACATATGCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAA
* * * * * *
25317627 CGTGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCACAAGTCGGGGATCAACCCGGTCCCCCTG
130 CGTGCAGGCACTCAACAGACCGGAGAGGCAGAATGCACAAGTCGGGGACCAACCCGATCCCCCTG
* * *
25317692 CATGCTGTCAATCCCGCTGCCACAACCCTCAGTTCGGTCCGATCTTAAACTAGGAATGAACTCCG
195 CATGCTATCAATCCCACTGCCACAACCCTCAGTTCGGTCCGATCTTAAACTAGGAACGAACTCCG
* * * * * * *
25317757 TATGCCTAAGGGAACCCATGGAACGAGCGTTCGGGCACTGAGCCGACCAGAGAGGCATAATGCGT
260 TATGCCTAAGGCAACACACGAAACGAGCATTCGGGCACTGAGCCGACCAGAGAGGCATAATACGC
* * * * *
25317822 AAGCTAGGGATGGCCAGGTCCCCTTCTGCGAGCTGTCGGTCCCACTGCCACAACCCTCGATCCGA
325 AAGCTAGGGATGCCCAGGTCCCCCTCTACGAGCTGTCGATCCCACTGCCACAACCATCGATCCGA
* * * *
25317887 CTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACAAAACGGGTGTGTAGGCA
390 CTGGGGCTTAGACATGAAATGAACTCCCTACGCCTAAGCCAACCCACAAAACAGGCGTGCAGGCA
** *
25317952 CTCAGCCGGTCGAAGAGACAGAATGCACAAG-CTGGGGATCAGCCCCATCCCCCCTTGT
455 CTCAGCCGACCGAAGAGACAGAATGCACAAGTC-GGGGATCAGCCCCATCCCCCC-TCT
*
25318010 GTGCTGTCGATCCTGTTACTGGTCCTGTTGTCGCAACCCTCGGTTCAGTCTGATCTTAGACTGGG
1 GTGCTATCGATCCTGTTACTGGTCCTGTTGTCGCAACCCTCGGTTCAGTCTGATCTTAGACTGGG
* * * * **
25318075 AAGGAACTACATATGCTTAGACATGGATTTAACTCCGTATGCCTAAGCCAACCCATGAAACGAGT
66 AAGGAACTACATATGCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAAC
* *
25318140 GTGCAGGCACTCAAACAG-CCGGAGAGGCAGAATGCGCAAGTCGGGGACCGACCCGATCCCCCCT
131 GTGCAGGCACTC-AACAGACCGGAGAGGCAGAATGCACAAGTCGGGGACCAACCCGAT-CCCCCT
* * * * * * * * * *
25318204 GCGTGCTATCGATCCTACTGTCGCAACCCTCGGTTTGGTCTGATCTTAGACTGGGAACGAACTCC
194 GCATGCTATCAATCCCACTGCCACAACCCTCAGTTCGGTCCGATCTTAAACTAGGAACGAACTCC
* * *
25318269 GTATGCCTAAGGCAACACACGAAATGAGCATTCGGGCACTGAGCCGATCGGAGAGGGC-TAATAC
259 GTATGCCTAAGGCAACACACGAAACGAGCATTCGGGCACTGAGCCGACCAGAGA-GGCATAATAC
* * * ** *
25318333 GCAAGC-CGGGATCGACCCA-GTCCCCCTGTACGTGCTGTCGATTTCACTGCCACAACCATCGGT
323 GCAAGCTAGGGAT-G-CCCAGGTCCCCCTCTACGAGCTGTCGATCCCACTGCCACAACCATCGAT
* * * *
25318396 TCGGCTGGGGCTTAGACATGAAATGAACTCCCTACGCCTAAGCCAACCCACGAAACAGGCGTGCG
386 CCGACTGGGGCTTAGACATGAAATGAACTCCCTACGCCTAAGCCAACCCACAAAACAGGCGTGCA
** * * * * ** * *
25318461 GGTGCTTAGTCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCCCGATCCCCTCTCT
451 GGCACTCAGCCGACCGAAGAGACAGAATGCACAAGTCGGGGATCAGCCCCATCCCCCCTCT
25318522 GTGCTATCGATC
1 GTGCTATCGATC
25318534 TTGCTACCGT
Statistics
Matches: 429, Mismatches: 88, Indels: 14
0.81 0.17 0.03
Matches are distributed among these distances:
512 164 0.38
513 258 0.60
514 7 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (511 bp):
GTGCTATCGATCCTGTTACTGGTCCTGTTGTCGCAACCCTCGGTTCAGTCTGATCTTAGACTGGG
AAGGAACTACATATGCTTAGACATGGAATGAACTCCGTAAGCCTAAGCCAACCCACGAAACGAAC
GTGCAGGCACTCAACAGACCGGAGAGGCAGAATGCACAAGTCGGGGACCAACCCGATCCCCCTGC
ATGCTATCAATCCCACTGCCACAACCCTCAGTTCGGTCCGATCTTAAACTAGGAACGAACTCCGT
ATGCCTAAGGCAACACACGAAACGAGCATTCGGGCACTGAGCCGACCAGAGAGGCATAATACGCA
AGCTAGGGATGCCCAGGTCCCCCTCTACGAGCTGTCGATCCCACTGCCACAACCATCGATCCGAC
TGGGGCTTAGACATGAAATGAACTCCCTACGCCTAAGCCAACCCACAAAACAGGCGTGCAGGCAC
TCAGCCGACCGAAGAGACAGAATGCACAAGTCGGGGATCAGCCCCATCCCCCCTCT
Found at i:25318593 original size:26 final size:26
Alignment explanation
Indices: 25318564--25318616 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25318554 CCGGTTCGAT
25318564 CTTAGA-GGGGGAATGAACTCCGTATG
1 CTTAGACGGGGG-ATGAACTCCGTATG
*
25318590 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACGGGGGATGAACTCCGTATG
25318616 C
1 C
25318617 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGGATGAACTCCGTATG
Found at i:25318881 original size:170 final size:170
Alignment explanation
Indices: 25318589--25318956 Score: 382
Period size: 170 Copynumber: 2.2 Consensus size: 170
25318579 AACTCCGTAT
* * * * *
25318589 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTATTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * ** * * * * *
25318654 CCGGCCAAATAGGTAGAATGTGTAAGTCGGGGTTAGCCCGGTCCTCCTCTGCGTGCTACCGATCC
66 CCAGCCAAACAGGTAGAATACGGAAGTCGGGGTCAGCCCGATCCTCCCCTACGTGCTACCGATCC
* *
25318719 CGCTGCCGTTCCTGCTACCACAACCCTCAGTCCGACTGGG
131 CGCTACCGGTCCTGCTACCACAACCCTCAGTCCGACTGGG
* *
25318759 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* ** * *
25318823 GCCAGCCGGACAGGTAGAATACGGAAG-CTGGGGATCAGTCCGATCC-CCCCTACGTGCTATCGA
65 ACCAGCCAAACAGGTAGAATACGGAAGTC-GGGG-TCAGCCCGATCCTCCCCTACGTGCTACCGA
* * * * * ** * *
25318886 TCCTGCTACTGGTCCTTCTGCCGCAACCCTCAGTCCGGTTCGA
128 TCCCGCTACCGGTCCTGCTACCACAACCCTCAGTCCGACTGGG
* *
25318929 TCTTAGACTGGGAATGAACTACGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
25318957 TTAGACATGG
Statistics
Matches: 160, Mismatches: 34, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
169 2 0.01
170 148 0.93
171 10 0.06
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
CCAGCCAAACAGGTAGAATACGGAAGTCGGGGTCAGCCCGATCCTCCCCTACGTGCTACCGATCC
CGCTACCGGTCCTGCTACCACAACCCTCAGTCCGACTGGG
Found at i:25318968 original size:26 final size:26
Alignment explanation
Indices: 25318930--25318982 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25318920 CCGGTTCGAT
25318930 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
25318956 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
25318982 C
1 C
25318983 ATAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:25319074 original size:366 final size:354
Alignment explanation
Indices: 25318382--25319084 Score: 790
Period size: 366 Copynumber: 2.0 Consensus size: 354
25318372 GATTTCACTG
* * *
25318382 CCACAACCATCGGTTCGGCTGGGGCTTAGACATGAAATGAACTCCCTACGCCTAAGCCAACCCAC
1 CCACAACCATCAGTCCGACTGGGGCTTAGACATGAAATGAACTCCCTACGCCTAAGCCAACCCAC
* * * * * *
25318447 GAAACAGGCGTGCGGGTGCTTAGTCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCCCGA
66 GAAACAGGCGTGCGGGCGCTCAGCCGACCGGACAGGCAGAATACGGAAGTCGGGGATCAGCCCGA
* * * *
25318512 TCCCCTCTCTGTGCTATCGATCTTGCTACCGTAACCCTCGGTCCGGTTCGATCTTAGAGGGGGAA
131 TCCCCCCTCTGTGCTATCGATCTTGCTACCGCAACCCTCAGTCCGGTTCGATCTTAGACGGGGAA
* * * * *
25318577 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
196 TGAACTACGTATGCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGT
* * * * * * * * *
25318642 GCGGGTATTCAACCGGCCAAATAGGTAGAATGTGTAAGTCGGGGTTAGCCCGGTCCTCCTCTGCG
261 GCGGGCACTCAACCGGCCAAAGAGGCAGAATGCGCAAGTCGGGGCTAGCCCGATCCTCCCCTGCG
25318707 TGCTACCGATCCCGCTGCCGTTCCTGCTA
326 TGCTACCGATCCCGCTGCCGTTCCTGCTA
* * * * *
25318736 CCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCGAC
1 CCACAACCATCAGTCCGACTGGGGCTTAGACATGAAATGAACTCCCTACGCCTAAGCCAACCCAC
* *
25318801 GAAAC-GAGCGTGCGGGCGCTCAGCC-AGCCGGACAGGTAGAATACGGAAG-CTGGGGATCAGTC
66 GAAACAG-GCGTGCGGGCGCTCAGCCGA-CCGGACAGGCAGAATACGGAAGTC-GGGGATCAGCC
*
25318863 CGATCCCCCCTAC-GTGCTATCGATCCTGCTACTGGTCCTTCTGCCGCAACCCTCAGTCCGGTTC
128 CGATCCCCCCT-CTGTGCTATCGA---T-CT--T-G-----CTACCGCAACCCTCAGTCCGGTTC
*
25318927 GATCTTAGACTGGGAATGAACTACGTATGCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCA
180 GATCTTAGACGGGGAATGAACTACGTATGCTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCA
* * * * * * *
25318991 ACCCACGAAACGAGTGTGCGGGCGCTCAGCTGGTCAGAGAGGCAGAATGCGCAAG-CTGGGGCTC
244 ACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAAAGAGGCAGAATGCGCAAGTC-GGGGCTA
*
25319055 GACCCGATCC-CCCCTGCGTGCTATCGATCC
308 G-CCCGATCCTCCCCTGCGTGCTACCGATCC
25319085 TACTGTCGCA
Statistics
Matches: 286, Mismatches: 44, Indels: 26
0.80 0.12 0.07
Matches are distributed among these distances:
353 3 0.01
354 125 0.44
355 1 0.00
357 1 0.00
358 2 0.01
360 1 0.00
361 1 0.00
365 1 0.00
366 143 0.50
367 8 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (354 bp):
CCACAACCATCAGTCCGACTGGGGCTTAGACATGAAATGAACTCCCTACGCCTAAGCCAACCCAC
GAAACAGGCGTGCGGGCGCTCAGCCGACCGGACAGGCAGAATACGGAAGTCGGGGATCAGCCCGA
TCCCCCCTCTGTGCTATCGATCTTGCTACCGCAACCCTCAGTCCGGTTCGATCTTAGACGGGGAA
TGAACTACGTATGCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGT
GCGGGCACTCAACCGGCCAAAGAGGCAGAATGCGCAAGTCGGGGCTAGCCCGATCCTCCCCTGCG
TGCTACCGATCCCGCTGCCGTTCCTGCTA
Found at i:25319121 original size:866 final size:866
Alignment explanation
Indices: 25317869--25319506 Score: 2176
Period size: 866 Copynumber: 1.9 Consensus size: 866
25317859 GGTCCCACTG
25317869 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCAC
1 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCAC
* * * * * * *
25317934 AAAACGGGTGTGTAGGCACTCAGCCGGTCGAAGAGACAGAATGCACAAGCTGGGGATCAGCCCCA
66 AAAACGAGCGTGCAGGCACTCAGCCAGCCGAACAGACAGAATACACAAGCTGGGGATCAGCCCCA
** * * * * *
25317999 TCCCCCCTTGTGTGCTGTCGATCCTGTTACTGGTCCTGTTGTCGCAACCCTCGGTTCAGTCTGAT
131 TCCCCCCTTACGTGCTATCGATCCTGCTACTGGTCCTGTTGCCGCAACCCTCAGTCCAGTCTGAT
* * *
25318064 CTTAGACTGGGAAGGAACTACATATGCTTAGACATGGATTTAACTCCGTATGCCTAAGCCAACCC
196 CTTAGACTGGGAAGGAACTACATATGCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCC
* *
25318129 ATGAAACGAGTGTGCAGGCACTCAAACAGCCGGAGAGGCAGAATGCGCAAGTCGGGGACCGACCC
261 ACGAAACGAGTGTGCAGGCACTCAAACAGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCGACCC
* *
25318194 GATCCCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCGGTTTGGTCTGATCTTAGACTGGG
326 GATCCCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCGGTTCGATCTGATCTTAGACTGGG
* *
25318259 AACGAACTCCGTATGCCTAAGGCAACACACGAAATGAGCAT-TCGGGCACTGAGCCGATCGGAGA
391 AACGAACTCCATATGCCTAAGGCAACACACGAAATGAGCATGT-GGGCACTGAGCCGACCGGAGA
* **
25318323 GGGC-TAATACGCAAG-CCGGGATCGACCCA-GTCCC-CCTGTACGTGCTGTCGATTTCACTGCC
455 -GGCATAATACGCAAGTCCGGGATCG-CCCAGGTCCCTCCTG--CGTGCCGTCGATCCCACTGCC
* * *
25318384 ACAACCATCGGTTCGGCTGGGGCTTAGACATGAAATGAACTCCCTACGCCTAAGCCAACCCACGA
516 ACAACCATCGGTCCAGCTAGGGCTTAGACATGAAATGAACTCCCTACGCCTAAGCCAACCCACGA
* ** * * *
25318449 AACAGGCGTGCGGGTGCTTAGTCGACCGGAGAGGCAGAATGCGTAAGTCGGGGATCAGCCCGATC
581 AACAGGCGTGCGGGAGCCCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGAACAGCCCGATC
* * * * * * * *
25318514 CCCTCT-CTGTGCTATCGAT-CTTGCTACCGTAACCCTCGGTCC-GGT-TCGATCTTAGAGGGGG
646 CCCTCTGC-GTGCTACCAATGC-TACTACCGCAACCCTCAG-CCTGGTCT-GATATTAAACGGGG
25318575 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
707 AATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
25318640 GTGCGGGTATTCAACCGGCCAAATAGGTAGAATGTGTAAGTCGGGGTTAGCCCGGTCCTCCTCTG
771 GTGCGGGTATTCAACCGGCCAAATAGGTAGAATGTGTAAGTCGGGGTTAGCCCGGTCCTCCTCTG
25318705 CGTGCTACCGATCCCGCTGCCGTTCCTGCTA
836 CGTGCTACCGATCCCGCTGCCGTTCCTGCTA
* * *
25318736 CCACAACCCTC-AGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCGA
1 CCACAACCCTCGA-TCCGACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCA
* * * * ** ** * *
25318800 CGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGACAGGTAGAATACGGAAGCTGGGGATCAGTCCG
65 CAAAACGAGCGTGCAGGCACTCAGCCAGCCGAACAGACAGAATACACAAGCTGGGGATCAGCCCC
*
25318865 ATCCCCCC-TACGTGCTATCGATCCTGCTACTGGTCCT-TCTGCCGCAACCCTCAGTCCGGT-TC
130 ATCCCCCCTTACGTGCTATCGATCCTGCTACTGGTCCTGT-TGCCGCAACCCTCAGTCCAGTCT-
* *
25318927 GATCTTAGACTGGGAATGAACTACGTATGCTTAGACATGGAATGAACTCCGTATGCATAAGCCAA
193 GATCTTAGACTGGGAAGGAACTACATATGCTTAGACATGGAATGAACTCCGTATGCATAAGCCAA
* * * * *
25318992 CCCACGAAACGAGTGTGCGGGCGCTC-AGCTGGTCAGAGAGGCAGAATGCGCAAG-CTGGGG-CT
258 CCCACGAAACGAGTGTGCAGGCACTCAAAC-AGCCAGAGAGGCAGAATGCGCAAGTC-GGGGAC-
*
25319054 CGACCCGATCCCCCCTGCGTGCTATCGATCCTACTGTCGCAACCTTC-GTTCCGATCTGATCTTA
320 CGACCCGATCCCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCGGTT-CGATCTGATCTTA
** * * * * * * *
25319118 GACTGGGAATTAACTCTATATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTGAGTCGGC
384 GACTGGGAACGAACTCCATATGCCTAAGGCAACACACGAAATGAGCATGTGGGCACTGAGCCGAC
* * * * *
25319183 CGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCAGGTCCCTCCTGCGTGCCGTCGGTCCCGCTG
449 CGGAGAGGCATAATACGCAAGTCCGGGATCGCCCAGGTCCCTCCTGCGTGCCGTCGATCCCACTG
* * * *
25319248 CCACATCCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
514 CCACAACCATCGGTCCAGCTAGGGCTTAGACATGAAATGAACTCCCTACGCCTAAGCCAACCCAC
* * *
25319313 GAAACGGGCGTGCGGGAGCCCAGTCGATCGGAGAGGTAGAATGCGCAAGCCGGGGAACAGCCCGA
579 GAAACAGGCGTGCGGGAGCCCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGAACAGCCCGA
* * *
25319378 TCCCCTCTGCGTGCTGCCAATGCTACTGCCGCAACCCTCAGCCTGGTCTGATATTAAACTGGGAA
644 TCCCCTCTGCGTGCTACCAATGCTACTACCGCAACCCTCAGCCTGGTCTGATATTAAACGGGGAA
* * *
25319443 TGAACTCCGTATGCTTTGACTTGGATGACCTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
709 TGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
25319507 ACGAGTGGTC
Statistics
Matches: 663, Mismatches: 92, Indels: 34
0.84 0.12 0.04
Matches are distributed among these distances:
865 55 0.08
866 472 0.71
867 132 0.20
868 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (866 bp):
CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCAC
AAAACGAGCGTGCAGGCACTCAGCCAGCCGAACAGACAGAATACACAAGCTGGGGATCAGCCCCA
TCCCCCCTTACGTGCTATCGATCCTGCTACTGGTCCTGTTGCCGCAACCCTCAGTCCAGTCTGAT
CTTAGACTGGGAAGGAACTACATATGCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCC
ACGAAACGAGTGTGCAGGCACTCAAACAGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCGACCC
GATCCCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCGGTTCGATCTGATCTTAGACTGGG
AACGAACTCCATATGCCTAAGGCAACACACGAAATGAGCATGTGGGCACTGAGCCGACCGGAGAG
GCATAATACGCAAGTCCGGGATCGCCCAGGTCCCTCCTGCGTGCCGTCGATCCCACTGCCACAAC
CATCGGTCCAGCTAGGGCTTAGACATGAAATGAACTCCCTACGCCTAAGCCAACCCACGAAACAG
GCGTGCGGGAGCCCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGAACAGCCCGATCCCCTC
TGCGTGCTACCAATGCTACTACCGCAACCCTCAGCCTGGTCTGATATTAAACGGGGAATGAACTC
CGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTAT
TCAACCGGCCAAATAGGTAGAATGTGTAAGTCGGGGTTAGCCCGGTCCTCCTCTGCGTGCTACCG
ATCCCGCTGCCGTTCCTGCTA
Found at i:25319443 original size:158 final size:156
Alignment explanation
Indices: 25318956--25319456 Score: 465
Period size: 158 Copynumber: 3.2 Consensus size: 156
25318946 ACTACGTATG
* *
25318956 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
25319020 -CTGGTCAGAGAGGCAGAATGCGCAAGCTGGGGCTCGACCCGATCCCCCCTGCGTGCTATCGATC
65 TC-GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCG-CCCGATCCCCTCTGCGTGCTGTCGATC
* * *
25319084 CTACTGTCGCAACCTTCGTTCCGATCTGAT
128 CTACTGCCGCAACCCTCG-TCCGGTCTGAT
* ** * * * *
25319114 CTTAGACTGGGAATTAACTCTATATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTGAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * *
25319179 CGGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCAGGT-CCCTCCTGCGTGCCGTCGGTCC
66 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCGATCCCCT-CTGCGTGCTGTCGATCC
** * * * **
25319243 CGCTGCCACATCCCTCGGTCCAG-CTAGGG
129 TACTGCCGCAACCCTC-GTCCGGTCT-GAT
* * * *
25319272 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCCCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
25319336 TCGATCGGAGAGGTAGAATGCGCAAGCCGGGGAACAGCCCGATCCCCTCTGCGTGCTGCCAATGC
65 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCGATCCCCTCTGCGTGCTGTCGATCC
25319401 TACTGCCGCAACCCTCAG-CCTGGTCTGAT
129 TACTGCCGCAACCCTC-GTCC-GGTCTGAT
* *
25319430 ATTAAACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
25319457 TTTGACTTGG
Statistics
Matches: 266, Mismatches: 66, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 9 0.03
158 247 0.93
159 10 0.04
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGCCCGATCCCCTCTGCGTGCTGTCGATCCTA
CTGCCGCAACCCTCGTCCGGTCTGAT
Found at i:25319654 original size:26 final size:26
Alignment explanation
Indices: 25319625--25319677 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25319615 CCGATCTGAT
25319625 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25319651 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25319677 C
1 C
25319678 CCAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25320177 original size:26 final size:26
Alignment explanation
Indices: 25320126--25320178 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25320116 CTGGTTTGAT
*
25320126 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25320152 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25320178 C
1 C
25320179 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25321179 original size:159 final size:157
Alignment explanation
Indices: 25320804--25321205 Score: 396
Period size: 159 Copynumber: 2.5 Consensus size: 157
25320794 AACTCCATAT
* * * * *
25320804 GCTTAGACATGAAATGAACTCTGTATGCCTAAACCAACCCCCGAAACGAGCGTCTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATC-GGGCACTCAG
* * * * * * * * * *
25320869 CCGACCGGAGAGGTAGAATGTGTAAGTCATGGATCGGCCCGATCCCCCCTTCGTGCTGTCGATCC
65 CTGGCTGGAGAGGCACAATGTGCAAGTCATGGATCAGCCCAATCCCCCCTACGTGCTATCGATCC
* ** *
25320934 TGCTACCGTAACCCTCAGTCTGGTCTGA
130 CGCTACCACAACCCTCAGTCTAGTCTGA
* * * * * * *
25320962 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAACATTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCA-TCGGGCACTCA
* *
25321026 GCTGGCTGGAGAGGCATAATGTGCAAGTCGA-GGATCAGCCCAATCCCCCTCTACGTGCTATCGG
64 GCTGGCTGGAGAGGCACAATGTGCAAGTC-ATGGATCAGCCCAATCCCCC-CTACGTGCTATCGA
* * *
25321090 TCCCGCTGCCACAACCCTTAGTCTAG-CTGGG
127 TCCCGCTACCACAACCCTCAGTCTAGTCT-GA
* * *
25321121 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCAT-CGGGCACTCAG
* *
25321186 CTAGATGGAGAGGCACAATG
65 CTGGCTGGAGAGGCACAATG
25321206 CACAAGCTGG
Statistics
Matches: 194, Mismatches: 43, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.01
158 89 0.46
159 103 0.53
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATCGGGCACTCAGC
TGGCTGGAGAGGCACAATGTGCAAGTCATGGATCAGCCCAATCCCCCCTACGTGCTATCGATCCC
GCTACCACAACCCTCAGTCTAGTCTGA
Found at i:25321231 original size:159 final size:158
Alignment explanation
Indices: 25320963--25321265 Score: 335
Period size: 159 Copynumber: 1.9 Consensus size: 158
25320953 CTGGTCTGAT
* * * * * * *
25320963 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAACATTCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACATGCGGGCACTCAGC
* * * ** * *
25321028 TGGCTGGAGAGGCATAATGTGCAAGTCGAGGATCAGCCCAATCCCCCTCTACGTGCTATCGGTCC
66 TAGATGGAGAGGCACAATGCACAAGTCGAGGATCAGCCCAATCCCCCT-TACATGCTATCGATCC
25321093 CGCTGCCACAACCCTTAGTCTAGCTGGGG
130 CGCTGCCACAACCCTTAGTCTAGCTGGGG
** *
25321122 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACATGCGGGCACTCAG
* *
25321186 CTAGATGGAGAGGCACAATGCACAAG-CTG-GGCATC-GACCCGATCCCCCTTACATGCTGTCGA
65 CTAGATGGAGAGGCACAATGCACAAGTC-GAGG-ATCAG-CCCAATCCCCCTTACATGCTATCGA
* * *
25321248 TCCTGCTGTCAGAACCCT
127 TCCCGCTGCCACAACCCT
25321266 CGGTCCGGTC
Statistics
Matches: 118, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
158 29 0.25
159 88 0.75
160 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACATGCGGGCACTCAGC
TAGATGGAGAGGCACAATGCACAAGTCGAGGATCAGCCCAATCCCCCTTACATGCTATCGATCCC
GCTGCCACAACCCTTAGTCTAGCTGGGG
Found at i:25322190 original size:26 final size:26
Alignment explanation
Indices: 25322161--25322213 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25322151 CCGATCTGAT
*
25322161 CTTAGATTGAGAATGAACTCTGCATG
1 CTTAGACTGAGAATGAACTCTGCATG
* * *
25322187 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGCATG
25322213 C
1 C
25322214 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGCATG
Found at i:25324129 original size:26 final size:26
Alignment explanation
Indices: 25324100--25324150 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25324090 TAGGTCCGAT
25324100 CTTAGACT-AGGAATAAACTCCGTATA
1 CTTAGACTGAGG-ATAAACTCCGTATA
*
25324126 CTTAGACTGAGGATGAACTCCGTAT
1 CTTAGACTGAGGATAAACTCCGTAT
25324151 GCCTAAGTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGGATAAACTCCGTATA
Found at i:25324505 original size:26 final size:26
Alignment explanation
Indices: 25324467--25324519 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25324457 CCAGTCTAAT
25324467 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25324493 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25324519 C
1 C
25324520 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25324874 original size:158 final size:158
Alignment explanation
Indices: 25324493--25324902 Score: 427
Period size: 158 Copynumber: 2.6 Consensus size: 158
25324483 ACTCCGTATG
* ** * **
25324493 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAATGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAAC
* * * *
25324558 CGATCGGAGAGACAGAATACGCAAGCCGGGA-CCGACCCAATCCCCCCTGCGTGCTATCGATCCC
66 CGACCGGAGAGACAGAATGCGTAAGCCGGGATCAGACCCAATCCCCCCTGCGTGCTATCGATCCC
**
25324622 GCTACCGTAACCCTCGATCCAGTCTGAT
131 GCTACCACAACCCTCGATCCAGTCTGAT
* * ** *
25324650 CTTAGAC-TAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTTCGGGTGCTGAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAA
* * * * *
25324714 CCGACCGGAGAGGCATAATGCATAAGCCGAGGATCAG-CCCAATCCCCCTCTGCGTGCTGTCGGT
65 CCGACCGGAGAGACAGAATGCGTAAGCCG-GGATCAGACCCAATCCCCC-CTGCGTGCTATCGAT
* * *
25324778 CCCGCTGCCACAACCCTCAGTTCC-G-CTGGT
128 CCCGCTACCACAACCCTC-GATCCAGTCTGAT
* * * * * *
25324808 GTTTAGACATGGAATGAA-TCCCTATGCCTAAGCCAACTCACGAAACGGGCGTACGGGCACTTAA
1 -CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAA
* * *
25324872 CCGGCTGGAGAGCCAGAATGCGTAAGCCGGG
65 CCGACCGGAGAGACAGAATGCGTAAGCCGGG
25324903 GATTGGTCTG
Statistics
Matches: 207, Mismatches: 39, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
156 1 0.00
157 77 0.37
158 79 0.38
159 45 0.22
160 5 0.02
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAAC
CGACCGGAGAGACAGAATGCGTAAGCCGGGATCAGACCCAATCCCCCCTGCGTGCTATCGATCCC
GCTACCACAACCCTCGATCCAGTCTGAT
Found at i:25325002 original size:26 final size:26
Alignment explanation
Indices: 25324966--25325015 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
25324956 CCGGTCCGAT
25324966 CTTAGACTGGGAATGAACTACGTACG
1 CTTAGACTGGGAATGAACTACGTACG
* *
25324992 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTACGTA
25325016 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTACG
Found at i:25325358 original size:26 final size:26
Alignment explanation
Indices: 25325329--25325378 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
25325319 CTGATCCGAT
25325329 CTTAAAC-TGGGAATGAACTCCGTACG
1 CTTAAACAT-GGAATGAACTCCGTACG
*
25325355 CTTAGACATGGAATGAACTCCGTA
1 CTTAAACATGGAATGAACTCCGTA
25325379 AGCATATAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAAACATGGAATGAACTCCGTACG
Found at i:25326281 original size:158 final size:157
Alignment explanation
Indices: 25325866--25326332 Score: 442
Period size: 157 Copynumber: 3.0 Consensus size: 157
25325856 GCACCTGCTG
* **
25325866 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * * **
25325931 GAAACGAGCGTGCGGGTGCTCAGCC-GGTCGAAGAGGCAAAATGCGTAAGCTAGGGACCGACCTG
66 GAAACGAGCGTACGGGCGCTCAGCCAGCT-GAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCA
*
25325995 GTCCCCCTACGTGCTGTCGATCTTGCTA
130 GTCCCCCTACGTGCTGTCGATCTCGCTA
* * ** * *
25326023 CCGCAACCCTCGATCTGGTCT-GATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCC
1 CCACAACCCTCGGTCTGGT-TGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * * * *
25326086 ATGAAACAAGCATTCGGGCGCTGAGCCTA-CCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCC
64 ACGAAACGAGCGTACGGGCGCTCAGCC-AGCTGAAGAGGCAAAATGCGCAAGCCAGGGATCGACC
* *
25326150 CAGTCCCCCTCTGCGTGCTGTCGGTC-CGCTA
128 CAGT-CCCC-CTACGTGCTGTCGATCTCGCTA
* * *
25326181 CCACAACCCTCGGTCTGGTTGGGGCTTCGACATTGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * * * *
25326246 GAAACG-GACGTACAGGCACTCAACCAGCTGAAGAGGCAGAATGCGCAAGCCGGGGATCAATCCT
66 GAAACGAG-CGTACGGGCGCTCAGCCAGCTGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCA
* *
25326310 GTCCCCCCTACGTGTTGCCGATC
130 GT-CCCCCTACGTGCTGTCGATC
25326333 CTACTTCTGG
Statistics
Matches: 243, Mismatches: 57, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 115 0.47
158 112 0.46
159 15 0.06
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (157 bp):
CCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTACGGGCGCTCAGCCAGCTGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCAG
TCCCCCTACGTGCTGTCGATCTCGCTA
Found at i:25328322 original size:26 final size:26
Alignment explanation
Indices: 25328293--25328345 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25328283 CCGATCCGAT
25328293 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25328319 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25328345 C
1 C
25328346 CTAAGGCAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25334467 original size:26 final size:26
Alignment explanation
Indices: 25334438--25334490 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25334428 CCGGTTTGAT
*
25334438 CTTAGACTTGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
* *
25334464 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
25334490 C
1 C
25334491 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:25337537 original size:26 final size:26
Alignment explanation
Indices: 25337499--25337551 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25337489 GGCTCAAACT
25337499 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25337525 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25337551 C
1 C
25337552 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25337850 original size:156 final size:157
Alignment explanation
Indices: 25337524--25337865 Score: 366
Period size: 156 Copynumber: 2.2 Consensus size: 157
25337514 AACTCCGTAT
* * * *
25337524 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGCGCGGGCACTCAA
* * **
25337589 TCGGCCGGAGAGGCAAAATGCACAAGCCAGGGATCGGCCCGGTCCCCCCTACGTACTGTCGGTCC
66 TCGGCCGAAGAGGCAAAATGCACAAGCCAGGGATCGGCCCGGTCCCCCCTACATACTGTCAATCC
** *
25337654 CACTGCCACAACCTCAGTTTGGTCGGG
131 CACTGCCACAACCTCAGTCAGGTCGGA
* *** *
25337681 GCTTAGACATGGAATGAAC-CCCTATGCCTAAGCCAACCCACGAAATGGGCGCGCGGGCACTTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGCGCGGGCACTCAA
* ** * * * *
25337745 TCGGCCGAAGAGGCAGAATGCGTAAGCCAGGGATCGGCCTGGTCCCCCCTGCATGCTGTCAATTC
66 TCGGCCGAAGAGGCAAAATGCACAAGCCAGGGATCGGCCCGGTCCCCCCTACATACTGTCAATCC
** *** *
25337810 TTCTGCTGTAACCCTCAGTCCAGTTC-GA
131 CACTGCCACAA-CCTCAGT-CAGGTCGGA
*
25337838 TCTTAGAC-TGGAAATGAACTCCGTATGC
1 GCTTAGACATGG-AATGAACTCCGTATGC
25337866 TTAGACTGGG
Statistics
Matches: 150, Mismatches: 31, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
156 99 0.66
157 41 0.27
158 10 0.07
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGCGCGGGCACTCAA
TCGGCCGAAGAGGCAAAATGCACAAGCCAGGGATCGGCCCGGTCCCCCCTACATACTGTCAATCC
CACTGCCACAACCTCAGTCAGGTCGGA
Found at i:25339683 original size:158 final size:159
Alignment explanation
Indices: 25339162--25339726 Score: 483
Period size: 159 Copynumber: 3.6 Consensus size: 159
25339152 CTTAGACATA
* * * * * ** * * ** *
25339162 GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCACTGAGCTGGTCAGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGA
* * * * * **
25339227 GGCAGAATGCACAAGCCGGGGACCGACCCGGTCCACCCCTACATGCTATAAATCCTGCTACTGCA
66 GGCAGAATGCGCAAGCCGGGGATCGACCCAGTCC-CCCCTGCATGCTGTCGATCCTGCTACTGCA
*
25339292 ACCCTTAGTCCAGT-TCGATCTTAGACTGG
130 ACCCTCAGTCCAGTCTCGATCTTAGACTGG
** * * * * * *
25339321 GAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGCT-TTGAGTCGGCCGGAG
1 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG-TGCTCAGCCGACCGGAG
* ** * * ** * **
25339385 AGGCATAATGCGCAAGTTGGGGATCGACCCAATCCCACTCTGTGTGCTGTCGGTCCTGCTACCAC
65 AGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCC-CCCTGCATGCTGTCGATCCTGCTACTGC
* * * * ** *
25339450 AACCTTCGGTCC-GGCTGGGGCTTAGCCAT-G
129 AACCCTCAGTCCAGTCTCGATCTTAGAC-TGG
* * * * * * *
25339480 GAATGAGCTCCCTATGCTTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAACCGACCGGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGA
* * * * **
25339545 GGTAGAATGCGCAAGTCGGGGATCGGCCCAGTCCCCCCTGCATGCTGTCGATCCTACTGTTGCAA
66 GGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCCTGCTACTGCAA
*
25339610 CCCTCAGTCCAGTCT-GATCTGAGACTGG
131 CCCTCAGTCCAGTCTCGATCTTAGACTGG
* * * *
25339638 GAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGATGCCCAGCCGACCAGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGA
*
25339703 GGCAGGATGCGCAAGCCGGGGATC
66 GGCAGAATGCGCAAGCCGGGGATC
25339727 AAACGGGTGG
Statistics
Matches: 311, Mismatches: 88, Indels: 15
0.75 0.21 0.04
Matches are distributed among these distances:
157 1 0.00
158 114 0.37
159 195 0.63
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGA
GGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCCTGCTACTGCAA
CCCTCAGTCCAGTCTCGATCTTAGACTGG
Found at i:25340362 original size:26 final size:26
Alignment explanation
Indices: 25340324--25340376 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25340314 GGCTCAAACT
*
25340324 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
25340350 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCTATATG
25340376 C
1 C
25340377 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:25340696 original size:26 final size:26
Alignment explanation
Indices: 25340667--25340719 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25340657 TCGGTTCGAT
*
25340667 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25340693 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25340719 C
1 C
25340720 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25340915 original size:26 final size:26
Alignment explanation
Indices: 25340877--25340929 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25340867 CTGATCAGAT
** *
25340877 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCATATG
25340903 CTTAGACAAGGAATGAACTCCATATG
1 CTTAGACAAGGAATGAACTCCATATG
25340929 C
1 C
25340930 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCATATG
Found at i:25341247 original size:26 final size:26
Alignment explanation
Indices: 25341218--25341270 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25341208 CCGATTTGAT
*
25341218 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACACCGTATG
*
25341244 CTTAGACATGGAATGAACACTGTATG
1 CTTAGACATGGAATGAACACCGTATG
25341270 C
1 C
25341271 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACACCGTATG
Found at i:25341501 original size:341 final size:341
Alignment explanation
Indices: 25340874--25341503 Score: 848
Period size: 341 Copynumber: 1.8 Consensus size: 341
25340864 GGTCTGATCA
*
25340874 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACTCCATATGCCTAAGCCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACACCATATGCCTAAGCCAA
* * * *
25340939 CCCATGAAACGAGCGTGCTAGCGCTAAGCAGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA
66 CCCACGAAACGAGCGTGCGAGCGCTAAGCAGACCAGAGAGGCAGAATGCGCAAGCTGGGGATCGA
** *
25341004 CCCGATCCCCCCTACGTGCTGTCGATCCTGATGTCACAACCCTCGATCCAGTCTGATCTTAGACT
131 CCCGATCCCCCCTACGTGCTGTCGATCCTGATACCACAACCCTCGATCCAGTCTAATCTTAGACT
* * * * *
25341069 GGGGATGAACTTCGTATGCCTAAGTCAACCCACGACACGAGCGTGCGGGCGCTCAACCGGTCAGA
196 GGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAACCGGCCAGA
* * **
25341134 GAGGCAGAATACGCAAGCTGGGGATCGGCTTGGTCCCCCTACGTGTTGTCAGTCCTACTGCCGCA
261 GAGGCAGAATACACAAACCAGGGATCGGCTTGGTCCCCCTACGTGTTGTCAGTCCTACTGCCGCA
25341199 ACCCTTGGTCCGATTT
326 ACCCTTGGTCCGATTT
* **
25341215 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACACTGTATGCCTAAGCCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACACCATATGCCTAAGCCAA
* * * * * * * *
25341280 CCCACGAAACGAGTGTGCGGGCGTTCAGCCGACCAGAGAGGTAGAATGCGTAATCTGGGGATCGA
66 CCCACGAAACGAGCGTGCGAGCGCTAAGCAGACCAGAGAGGCAGAATGCGCAAGCTGGGGATCGA
* * * * * **
25341345 CCCCGGT-CCCCCTGCGTGCTGTCGATCTTGGTACCACAACCCTCGGTCTGGTCTAATCTTAGAC
131 -CCCGATCCCCCCTACGTGCTGTCGATCCTGATACCACAACCCTCGATCCAGTCTAATCTTAGAC
* * * * * * *
25341409 TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCATTCGGGCGTTGAGCCTGCCGG
195 TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAACCGGCCAG
* *
25341474 AGAGGCATAATGCACAAACCAGGGATCGGC
260 AGAGGCAGAATACACAAACCAGGGATCGGC
25341504 CCAGTCCCCT
Statistics
Matches: 244, Mismatches: 44, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
341 239 0.98
342 5 0.02
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.20
Consensus pattern (341 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATGAACACCATATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGAGCGCTAAGCAGACCAGAGAGGCAGAATGCGCAAGCTGGGGATCGA
CCCGATCCCCCCTACGTGCTGTCGATCCTGATACCACAACCCTCGATCCAGTCTAATCTTAGACT
GGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAACCGGCCAGA
GAGGCAGAATACACAAACCAGGGATCGGCTTGGTCCCCCTACGTGTTGTCAGTCCTACTGCCGCA
ACCCTTGGTCCGATTT
Found at i:25341680 original size:158 final size:156
Alignment explanation
Indices: 25341243--25341680 Score: 407
Period size: 158 Copynumber: 2.8 Consensus size: 156
25341233 AACTCCGTAT
* * * *
25341243 GCTTAGACATGGAATGAACACTGTATGCCTAAGCCAACCCACGAAAC-GAGTGTGCGGGCGTTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACAG-GTGTGCGGGCGTTCA
* * * * * * *
25341307 GCCGACCAGAGAGGTAGAATGCGTAATCTGGGGATCGACCCCGGTCCCCCTGCGTGCTGTCGATC
65 GCCG-CCGGAGAGGCAGAATGCGCAAACCGGGGATCGA-CCCGGTCCCTCTGCGTGCTGCCGATC
* * * *
25341372 TTGGTACCACAACCCTCGGTCTGGTCTAA
128 CTGCTACCACAACCCTCGGTCTCGACTAA
* * * ** * *
25341401 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAG-TCAACCCATGAAACAAGCATTCGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCATGAAACAGGTGTGCGGGCGTTC
* * * * * * *
25341464 AGCCTGCCGGAGAGGCATAATGCACAAACCAGGGATCGGCCCAGTCCCCTCTGTGTGCTGCCGGT
64 AGCC-GCCGGAGAGGCAGAATGCGCAAACCGGGGATCGACCCGGT-CCCTCTGCGTGCTGCCGAT
* **
25341529 CCTGCTGCCACAACCCTCGGTC-CGACTGGG
127 CCTGCTACCACAACCCTCGGTCTCGACT-AA
* * *
25341559 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCTAACCCATGAAACAGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACAGGTGTGCGGGCGTTCAG
* * * *
25341624 CCAGTCGGAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCTTTCTGCGTGCT
66 CC-GCCGGAGAGGCAGAATGCGCAAACCGGGGATCGACCCGGTCC-CTCTGCGTGCT
25341681 ATCGACCGAA
Statistics
Matches: 218, Mismatches: 53, Indels: 18
0.75 0.18 0.06
Matches are distributed among these distances:
157 11 0.05
158 204 0.94
159 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACAGGTGTGCGGGCGTTCAG
CCGCCGGAGAGGCAGAATGCGCAAACCGGGGATCGACCCGGTCCCTCTGCGTGCTGCCGATCCTG
CTACCACAACCCTCGGTCTCGACTAA
Found at i:25342133 original size:157 final size:157
Alignment explanation
Indices: 25341782--25342162 Score: 428
Period size: 157 Copynumber: 2.4 Consensus size: 157
25341772 CCTGCTGCCA
* * * *
25341782 ACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGA
1 ACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG-
* * * * *
25341847 AACGAGCGTGCGGGTGCTCAGCCGGTCGGAAAGGCAAAATACGCAAGCTAGGGACTGACCTAGTC
65 AACAAGCATGCGGGCGCTCAGCCGGCCGGAAAGGCAAAATACGCAAGCCAGGGACTGACCTAGTC
*
25341912 CCCCCTGCGTGCTGTCGATCTTGCTACC
130 CCCCCTGCGTGCTGTCGATCTCGCTACC
* * ** * *
25341940 GCAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCAT
1 ACAACCCTCGGTCCGGT-TGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * * * *
25342003 GAACAAGCATTCGGGCGCTGAGCCTGCCGGAGAGGCATAATGCGTAAGCCAGGGA-TCGGCCTAG
64 GAACAAGCATGCGGGCGCTCAGCCGGCCGGAAAGGCAAAATACGCAAGCCAGGGACT-GACCTAG
*
25342067 TCCCCCTCTGCGTGCTGTCGGTC-CGCTACC
128 TCCCCC-CTGCGTGCTGTCGATCTCGCTACC
* * * *
25342097 ACAACCCTCAGTCCGGTTGGGGCTTCGACATTGAATGAACTCCCTATGCCTAAGCCAACCCATGA
1 ACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
25342162 A
66 A
25342163 ACGGACGTAC
Statistics
Matches: 182, Mismatches: 35, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
156 2 0.01
157 113 0.62
158 66 0.36
159 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
ACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
ACAAGCATGCGGGCGCTCAGCCGGCCGGAAAGGCAAAATACGCAAGCCAGGGACTGACCTAGTCC
CCCCTGCGTGCTGTCGATCTCGCTACC
Found at i:25342230 original size:157 final size:158
Alignment explanation
Indices: 25341782--25342230 Score: 439
Period size: 158 Copynumber: 2.8 Consensus size: 158
25341772 CCTGCTGCCA
* * * *
25341782 ACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGA
1 ACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
* * * * * *
25341847 AACGAGCGTGCGGGTGCTCAGCCGGTCGGAA-AGGCAAAATACGCAAGCTAGGGA-CTGACCTAG
66 AACGAGCGTACGGGCGCTCAGCCAG-CCGAAGAGGCAAAATGCGCAAGCCAGGGATC-GACCTAG
* *
25341910 TCCCCCCTGCGTGCTGTCGATCTTGCTACC
129 TCCCCTCTGCGTGCTGTCGATCTCGCTACC
* * ** * *
25341940 GCAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCAT
1 ACAACCCTCGGTCCGGT-TGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAT
* * * * * * * * *
25342003 G-AACAAGCATTCGGGCGCTGAGCCTGCCGGAGAGGCATAATGCGTAAGCCAGGGATCGGCCTAG
64 GAAACGAGCGTACGGGCGCTCAGCCAGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCTAG
*
25342067 TCCCCCTCTGCGTGCTGTCGGTC-CGCTACC
129 T-CCCCTCTGCGTGCTGTCGATCTCGCTACC
* * * *
25342097 ACAACCCTCAGTCCGGTTGGGGCTTCGACATTGAATGAACTCCCTATGCCTAAGCCAACCCATGA
1 ACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
* * * *
25342162 AACG-GACGTACAGGCACTTAGCCAGCCGAAGAGGCAGAATGCGCAAGCC-GAGGATCGATCCT-
66 AACGAG-CGTACGGGCGCTCAGCCAGCCGAAGAGGCAAAATGCGCAAGCCAG-GGATCGA-CCTA
25342224 GTCCCCT
128 GTCCCCT
25342231 TTTGCATACT
Statistics
Matches: 233, Mismatches: 47, Indels: 23
0.77 0.16 0.08
Matches are distributed among these distances:
156 4 0.02
157 109 0.47
158 116 0.50
159 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
ACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGA
AACGAGCGTACGGGCGCTCAGCCAGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCTAGTC
CCCTCTGCGTGCTGTCGATCTCGCTACC
Found at i:25343262 original size:15 final size:16
Alignment explanation
Indices: 25343224--25343259 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
25343214 CACCCCCCAG
25343224 CCCCCAATCACCGGAA
1 CCCCCAATCACCGGAA
25343240 CCCCCAATCACCGGAA
1 CCCCCAATCACCGGAA
25343256 CCCC
1 CCCC
25343260 AATGCCGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.56, G:0.11, T:0.06
Consensus pattern (16 bp):
CCCCCAATCACCGGAA
Found at i:25343387 original size:26 final size:26
Alignment explanation
Indices: 25343358--25343410 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25343348 GGCTCAAAAT
25343358 CTTAGAC-TGTGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
25343384 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25343410 C
1 C
25343411 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25344244 original size:26 final size:26
Alignment explanation
Indices: 25344215--25344267 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25344205 CCGGTCCGAT
*
25344215 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
25344241 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
25344267 C
1 C
25344268 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:25350345 original size:26 final size:26
Alignment explanation
Indices: 25350316--25350368 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25350306 CCGGTTCGAT
25350316 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
25350342 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
25350368 C
1 C
25350369 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:25351360 original size:22 final size:22
Alignment explanation
Indices: 25351332--25351374 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
25351322 GCAAGTCGGG
25351332 GATCCTTGTATTTGGTAGAGGT
1 GATCCTTGTATTTGGTAGAGGT
25351354 GATCCTTGTATTTGGTAGAGG
1 GATCCTTGTATTTGGTAGAGG
25351375 CATGCATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.19, C:0.09, G:0.33, T:0.40
Consensus pattern (22 bp):
GATCCTTGTATTTGGTAGAGGT
Found at i:25351760 original size:25 final size:26
Alignment explanation
Indices: 25351732--25351783 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25351722 GGCTCCAAAT
25351732 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
* *
25351757 CTTAGACATTGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25351783 C
1 C
25351784 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25352271 original size:24 final size:26
Alignment explanation
Indices: 25352232--25352279 Score: 82
Period size: 24 Copynumber: 1.9 Consensus size: 26
25352222 CTGATCCGAT
25352232 CTTAGACTAGGAATGAACTCCGTACG
1 CTTAGACTAGGAATGAACTCCGTACG
25352258 CTTAGACT-GG-ATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
25352280 TCCCTAAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 12 0.55
25 2 0.09
26 8 0.36
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTACG
Found at i:25352875 original size:157 final size:157
Alignment explanation
Indices: 25352591--25352885 Score: 412
Period size: 157 Copynumber: 1.9 Consensus size: 157
25352581 CCCTCGGTTC
* *
25352591 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCGTGCGGG
1 GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGG
* * *
25352656 CACTCAGCCGACCGAAGAGGCAGAATGCGCTAGCGGGGACCGACCCGGTCCCCCCTTGCGTGCTG
66 CACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCGGGGACCGACCCGGTCCCCCATTACGTGCTG
25352721 TCGATCCTGCTGTGCAACCCATGGTCT
131 TCGATCCTGCTGTGCAACCCATGGTCT
* * * *
25352748 GGTCCAATCTTATACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAATGAGTGTGCGGG
1 GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGG
* * * * * * * * *
25352813 CGCTGAGTCGACTGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGT-CTCTATTACGTGCT
66 CACTCAGCCGACCGAAGAGGCAGAATGCGCAAG-CGGGGACCGACCCGGTCCCCCATTACGTGCT
25352877 GTCGATCCT
130 GTCGATCCT
25352886 ACTACCGCAT
Statistics
Matches: 119, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
157 105 0.88
158 14 0.12
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.21
Consensus pattern (157 bp):
GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGG
CACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCGGGGACCGACCCGGTCCCCCATTACGTGCTG
TCGATCCTGCTGTGCAACCCATGGTCT
Found at i:25352943 original size:26 final size:26
Alignment explanation
Indices: 25352914--25352966 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25352904 TTGGTTTGAT
*
25352914 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
25352940 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
25352966 C
1 C
25352967 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:25353685 original size:26 final size:26
Alignment explanation
Indices: 25353647--25353699 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25353637 GGCTTAAAAT
*
25353647 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25353673 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25353699 C
1 C
25353700 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25354198 original size:26 final size:26
Alignment explanation
Indices: 25354147--25354199 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25354137 CCGATCCGAT
*
25354147 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
*
25354173 CTTAGACTGGGGATGAACT-TCATATG
1 CTTAGACTGGGAATGAACTCT-ATATG
25354199 C
1 C
25354200 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:25354435 original size:25 final size:26
Alignment explanation
Indices: 25354407--25354458 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25354397 GGCTCCAAAT
25354407 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
* *
25354432 CTTAGACATTGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25354458 C
1 C
25354459 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25355550 original size:159 final size:159
Alignment explanation
Indices: 25355256--25355645 Score: 373
Period size: 159 Copynumber: 2.5 Consensus size: 159
25355246 CCGCTGCCGG
* * *
25355256 TCCTACTGCCACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGC
1 TCCTACTGCCACAACCCTCGGTCCGGCTGGAGCTTAGACATGGAATGAACTTCGTATGCATAAGC
** * * * * *
25355321 CAACCCACGAATCGAGCGCGTGAGCGCTCAGCTGGCCGGAGAGGTAGAATGCGTAAGCCGGGGAT
66 CAACCCACGAATCGAGCGCACGAGCGCTCAGCTGACCGAAGAGGCAGAATGCGCAAGCCAGGGAT
25355386 CGGCCCAGTCCCTTACTGCATGCTGTTGA
131 CGGCCCAGTCCCTTACTGCATGCTGTTGA
*
25355415 TCCTACTGCCACAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGGAATGAAC-TCTGTATGCATA
1 TCCTACTGCCACAACCCTCGGTCCGG-CTGGAGCTTAGACAT-GGAATGAACTTC-GTATGCATA
* * * * * *
25355477 AGTCAACCCACGAAAT-GAGCGTACGAGCGCTGAGCTGATCGAAGAGGCATAATGTGCAAGCCAG
63 AGCCAACCCACG-AATCGAGCGCACGAGCGCTCAGCTGACCGAAGAGGCAGAATGCGCAAGCCAG
* ** ** *
25355541 GGATTGGCCC-GATCCCCCTT--TGTGTGCTGCAGG
127 GGATCGGCCCAG-T--CCCTTACTGCATGCTGTTGA
** * * * * * * *
25355574 TCCCGCTGCGACAACCCTCGATCCGACTGG-GCTTAAACATGGAATGAACTCCCTATGCCTAAGC
1 TCCTACTGCCACAACCCTCGGTCCGGCTGGAGCTTAGACATGGAATGAACTTCGTATGCATAAGC
25355638 CAACCCAC
66 CAACCCAC
25355646 AAAACGGGCG
Statistics
Matches: 187, Mismatches: 34, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
158 38 0.20
159 139 0.74
160 5 0.03
161 5 0.03
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (159 bp):
TCCTACTGCCACAACCCTCGGTCCGGCTGGAGCTTAGACATGGAATGAACTTCGTATGCATAAGC
CAACCCACGAATCGAGCGCACGAGCGCTCAGCTGACCGAAGAGGCAGAATGCGCAAGCCAGGGAT
CGGCCCAGTCCCTTACTGCATGCTGTTGA
Found at i:25355815 original size:685 final size:670
Alignment explanation
Indices: 25354404--25356052 Score: 1736
Period size: 685 Copynumber: 2.4 Consensus size: 670
25354394 CGTGGCTCCA
* * * * * * *
25354404 AATCTTAGACTG-GAATGAACTCCGTATGCTTAGAC-ATTGAATGAACTCTGTATGCCTAAGCCA
1 AATCTTAGACAGAGAATGAACTTCGTATGCTTAGACTA-GGGATGAACTCCGTATGCCGAAGTCA
* * * * * * * * ** * * *
25354467 ACCCACGAAATGAGAGTACGGGTGCCCAGCCGATCGGAGAGGCATAATGCACAAG-CCGAGGATC
65 ACACACAAAACGAGCGTACGAGCGCTCAGCAGGCCAGAGAGGCATAATGCGCAAGTCAG-GGATC
* * *
25354531 AGCCCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGCCAGTCCTGCTACCACAACCCTCAGTCC-
129 AGCCCGGTCCCCCTCTGCGTGCTACCGATCCCGCTGCCGGTCCTGCTACCACAACCCTCGGTCCG
* * *
25354595 GATCGGGGCTTAGACATGGAATGAACTCCGTATGCCTCAGCTAACCCACGAAACGAGCGTGCGGG
194 GAT-GGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCGAGC--GCGGG
* *** * *
25354660 CGCTCAGCCGATTGGAGAGGCAGAATGCGCAAGCCGGGGATCAGTCCGATCCCTCTTGCGTGCTG
256 CGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTTGCATGCTG
* ** * *
25354725 TAGATCCCGCTACCGTAACCTTCGATCCCATTTGATCTTAGACTGGCAATGAACTCCGTATGCAT
321 TAGATCCCACTACCACAACCCTCGATCCCATCTGATCTTAGACTGGCAATGAACTCCGTATGCAT
* * * * *
25354790 AAGTCAACCAATGAAATGAGCGTTCGGGCGCTGAACAGGCCGAAGAGGCATAATGCGCAAATCGA
386 AAGTCAACCAACGAAATGAGCGTACGAGCGCTGAACAGACCGAAGAGGCATAATGCGCAAACCGA
* * * * * *
25354855 GGATCAGCTCGGTCCCCCTCTGCGTACTGTCGATCTCGCTGCCACAAACCTCGGTCTGGCTGGGG
451 GGATCAGCCCGATCCCCCTCTGCGTACTGTCGATCCCGCTGCCACAAACCTCGATCCGACTGGGG
* * * * *
25354920 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACGCACGAAACGAGTGTGCGGGCGCTCAAC
516 CTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAAC
* * * *
25354985 CGGTTGGAGGGGCAGAATGCGCAAGTCGAGGATCGACCAGATCCCCCTTGCGTGCTGTCGATCCT
581 CGGTGGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCAGATCCCCCCTGCGTGCTGCCGATCCT
* ** *
25355050 ACTGACGTAACCCTTGGTCTGGTCC
646 ACGGACGTAACCCTCAGTCCGGTCC
* * * * * *
25355075 AATTTTAGACAGGGAATGAACTTTGTATGGTTAGAGTAGGGATGAACTCCGTATGCCTAAGTCAA
1 AATCTTAGACAGAGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCGAAGTCAA
* *
25355140 CACACAAAACGAGCGTACGAGCGCTCAATCGGCCGGAGAGGCCGACTGGAGAGGCATAATGTGTA
66 CACACAAAACGAGCGTACGAGCGCTC-A---G-C----AGGCC-A---GAGAGGCATAATGCGCA
* * * *
25355205 AGTCAGGGATCAGCCCGATCCCCCTCTGCGTGCTATCGATCCCGCTGCCGGTCCTACTGCCACAA
118 AGTCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGATCCCGCTGCCGGTCCTGCTACCACAA
* * *
25355270 CCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAATCG
183 CCCTCGGTCCGGATGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCG
* * *
25355335 AGCGCGTGAGCGCTCAGCTGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCC-AGTCCCT
248 AGCGCG-G-GCGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGA-TCCCT
* * * * ** *
25355399 -TACTGCATGCTGTTGATCCTACTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
310 CT--TGCATGCTGTAGATCCCACTACCACAACCCTCGATCCCATCTGATCTTAGACTGGCAATGA
* * * * *
25355463 ACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTACGAGCGCTGAGCTGATCGAAGAGGCATA
373 ACTCCGTATGCATAAGTCAACCAACGAAATGAGCGTACGAGCGCTGAACAGACCGAAGAGGCATA
* * ** * * * * * *
25355528 ATGTGCAAGCC-AGGGATTGGCCCGATCCCCCTTTGTGTGCTG-CAGGTCCCGCTGCGACAACCC
438 ATGCGCAAACCGA-GGATCAGCCCGATCCCCCTCTGCGTACTGTC-GATCCCGCTGCCACAAACC
*
25355591 TCGATCCGACT-GGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGC
501 TCGATCCGACTGGGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGC
* * * * * * *
25355655 GTGCGGGCACTCAGTCC-GTGGGAGAGGTAGAATGCGCAAGTTGGGGATCGGCCCGGTCCCCCCT
566 GTGCGGGCACTCA-ACCGGTGGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCAGATCCCCCCT
* * ** *
25355719 GCGTGCTGCCGATCTTGCGGTGGTAACCCTCAGTCCGGTCT
630 GCGTGCTGCCGATCCTACGGACGTAACCCTCAGTCCGGTCC
* * *
25355760 GATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTAGGGATGAACTTCGTATGCCGAAGTCAA
1 AATCTTAGACAGAGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCGAAGTCAA
* ** ** * * * * * *
25355825 CCCATGAAACGAGCGTGTGGGTGCTCAGCTGGCCAGATAGGCATAATGCGCAAGTCGGGGATTAG
66 CACACAAAACGAGCGTACGAGCGCTCAGCAGGCCAGAGAGGCATAATGCGCAAGTCAGGGATCAG
* * * * *
25355890 CTCGGTCCCCTTCTGTGTGCTACCGATCCCGCTGCAGGTCCTGCTACCACAACCCTCGGTCCGGT
131 CCCGGTCCCCCTCTGCGTGCTACCGATCCCGCTGCCGGTCCTGCTACCACAACCCTCGGTCCGGA
* *
25355955 TGGGGCTTAGACATGGAATAAACTCCGTATGCCCAAGCCAACCCACGAAAT-GAGCGTACGGGCG
196 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AATCGAGCG--CGGGCG
*
25356019 CTCAGCTGGCCGAAGAGGCAGAATGCGCAAGCCG
258 CTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCG
25356053 AGAATCGACC
Statistics
Matches: 801, Mismatches: 149, Indels: 55
0.80 0.15 0.05
Matches are distributed among these distances:
671 10 0.01
672 224 0.28
673 6 0.01
674 2 0.00
675 1 0.00
676 5 0.01
677 1 0.00
680 1 0.00
681 3 0.00
683 3 0.00
684 4 0.00
685 378 0.47
686 163 0.20
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (670 bp):
AATCTTAGACAGAGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCGAAGTCAA
CACACAAAACGAGCGTACGAGCGCTCAGCAGGCCAGAGAGGCATAATGCGCAAGTCAGGGATCAG
CCCGGTCCCCCTCTGCGTGCTACCGATCCCGCTGCCGGTCCTGCTACCACAACCCTCGGTCCGGA
TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAATCGAGCGCGGGCGCTC
AGCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCTTGCATGCTGTAGAT
CCCACTACCACAACCCTCGATCCCATCTGATCTTAGACTGGCAATGAACTCCGTATGCATAAGTC
AACCAACGAAATGAGCGTACGAGCGCTGAACAGACCGAAGAGGCATAATGCGCAAACCGAGGATC
AGCCCGATCCCCCTCTGCGTACTGTCGATCCCGCTGCCACAAACCTCGATCCGACTGGGGCTTAA
ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAACCGGTG
GGAGAGGCAGAATGCGCAAGTCGAGGATCGACCAGATCCCCCCTGCGTGCTGCCGATCCTACGGA
CGTAACCCTCAGTCCGGTCC
Found at i:25357336 original size:26 final size:26
Alignment explanation
Indices: 25357306--25357358 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25357296 GTTGACTTAT
25357306 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
* **
25357332 GCATATGGAGTTCATTTTCAGTCTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
25357358 G
1 G
25357359 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGTCTAA
Found at i:25358035 original size:26 final size:26
Alignment explanation
Indices: 25357998--25358050 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25357988 CTTGGCTTAG
*
25357998 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
25358024 GCATACGAAGTTGATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
25358050 G
1 G
25358051 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:25358545 original size:26 final size:28
Alignment explanation
Indices: 25358506--25358560 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
25358496 TTGGGCTTAG
*
25358506 GCATAACGGAGTTC-A-TTCCATGTCTAA
1 GCATAACGAAGTTCAATTTCCA-GTCTAA
25358533 GCAT-ACGAAGTTCAATTTCCAGTCTAA
1 GCATAACGAAGTTCAATTTCCAGTCTAA
25358560 G
1 G
25358561 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 8 0.32
27 12 0.48
28 5 0.20
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (28 bp):
GCATAACGAAGTTCAATTTCCAGTCTAA
Found at i:25359080 original size:184 final size:184
Alignment explanation
Indices: 25358858--25359513 Score: 561
Period size: 184 Copynumber: 3.4 Consensus size: 184
25358848 TCTCTGGTCG
* * *
25358858 GCCTCTCC-AGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTC
1 GCCTCTCCGACTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
25358922 ATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGC
66 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
* *
25358987 AGCAGGATCGACAACACGCAGGGGGGATCAGGTCGATCCCTGACTTGCGCATTCT
131 AGCAGGATCGACAGCACGCAGGGGGGA-CAGGTCGATCCCTGACTTGTGCATTCT
* * * * *
25359042 GCCTCTCCGA-TCGACTGAGCGTCCACACGCTCATTTCGTGAGTTGGCTTAAGCATACGGAGTTC
1 GCCTCTCCGACTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * *
25359106 AT-TCCATGTCTAAGCCTACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGA
66 ATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG-
* * * * *
25359170 TAGCAAGACCAGTAGAAAGATCGACAGCATGCAGGGGGAACTGGGTCGATCCCCGACTTTTGCAT
129 --GC-AG--C---AG---GATCGACAGCACGCAGGGGGGAC-AGGTCGATCCCTGACTTGTGCAT
25359235 TCT
182 TCT
* * * * **
25359238 ACCACTCCGACCGGCCTCTCCGACCTTCTGAACGCCCGCGCGCTTGTTTCGTGGGTTGACTTAGG
1 GCCTCTCCGA-------CT-CGA----CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * *
25359303 CATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACC
54 CATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * * * * *
25359368 GAGGGTTACGGCAGCAGGATCGACAGCACGTAGGAGGGACTGGGCTGAT-CCTCGACTTGTACAT
119 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACAGGTC-GATCCCT-GACTTGTGCAT
25359432 TCT
182 TCT
* * * * * * * * *
25359435 GCCTCTCCGGC-CAACTGAGTGCCTGGACGC-CTGTTTTGTGGGTTGGCTTAGGCATAAGGAGTT
1 GCCTCTCCGACTCGACTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGACTTAGGCATACGGAGTT
*
25359498 CAT-TCCATGTCTAAGC
65 CATCCCCA-GTCTAAGC
25359514 CTCAGCCAGA
Statistics
Matches: 375, Mismatches: 64, Indels: 66
0.74 0.13 0.13
Matches are distributed among these distances:
183 6 0.02
184 156 0.42
185 1 0.00
187 2 0.01
188 4 0.01
190 2 0.01
193 2 0.01
195 1 0.00
196 54 0.14
197 41 0.11
200 2 0.01
203 1 0.00
204 1 0.00
205 5 0.01
206 2 0.01
209 92 0.25
210 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.24
Consensus pattern (184 bp):
GCCTCTCCGACTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
AGCAGGATCGACAGCACGCAGGGGGGACAGGTCGATCCCTGACTTGTGCATTCT
Found at i:25359126 original size:26 final size:26
Alignment explanation
Indices: 25359090--25359145 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
25359080 TGAGTTGGCT
25359090 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
*
25359116 TAAGCCTACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
25359142 TAAG
1 TAAG
25359146 ATCGGACCGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Done.