Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 260 of 402
Found at i:25359338 original size:26 final size:26
Alignment explanation
Indices: 25359302--25359354 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25359292 GTTGACTTAG
25359302 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
25359328 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
25359354 G
1 G
25359355 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:25359435 original size:393 final size:393
Alignment explanation
Indices: 25358681--25359515 Score: 1013
Period size: 393 Copynumber: 2.1 Consensus size: 393
25358671 ATACTCTCGG
* * * *
25358681 TTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTGCTAC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTACAGAGTTCATTCCCAC
* * * * *
25358746 TCTAAGATCGGATCGGACCGAGGGTTGTTGCAGCAGGACCAGTAGCAGGATCGGCAGCACGCAAG
66 TCTAAGATCGGACCGGACCGAGGGTTGTTGCAGCAAGACCAGTAGAAAGATCGACAGCACGCAAG
* * * * * * ** *
25358811 GAGGGACTGGGCCGCTCCCTGGCTTGCATATTCTGCCTCTCTGGTCGGCCTCTCCAGTCGGCTGA
131 GAGGGACTGGGCCGATCCCCGACTTGCA-ATTCTACCACTCCGACCGGCCTCTCCAGCCGGCTGA
* * *
25358876 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATAC
195 ACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATAC
* * *
25358941 AGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAACACGC
260 AGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATCGACAACACGC
* * * * *
25359006 AGGGGGGATCAGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGACTGAGCGTCC-ACAC
325 AGGAGGGATCAGGGCGATCCCTGACTTGCACATTCTGCCTCTCCGACCAACTGAGCG-CCTACAC
25359070 G-CTCA
389 GCCT-A
* * * *
25359075 TTTCGTGAGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGCCTACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTACAGAGTTCATTCCCAC
* * *
25359140 TCTAAGATCGGACCGGATCGAGGGTTG-TGATAGCAAGACCAGTAGAAAGATCGACAGCATGC-A
66 TCTAAGATCGGACCGGACCGAGGGTTGTTG-CAGCAAGACCAGTAGAAAGATCGACAGCACGCAA
* **
25359203 GG-GGGAACTGGGTCGATCCCCGACTTTTGC-ATTCTACCACTCCGACCGGCCTCTCC-GACCTT
130 GGAGGG-ACTGGGCCGATCCCCGAC--TTGCAATTCTACCACTCCGACCGGCCTCTCCAG-CCGG
* **
25359265 CTGAACGCCCGCGCGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGC
191 CTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGC
* ** *
25359330 ATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCAGGATCGACAGC
256 ATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATCGACAAC
* * * * *
25359395 ACGTAGGAGGGA-CTGGGCTGAT-CCTCGACTTGTACATTCTGCCTCTCCGGCCAACTGAGTGCC
321 ACGCAGGAGGGATCAGGGC-GATCCCT-GACTTGCACATTCTGCCTCTCCGACCAACTGAGCGCC
** *
25359458 TGGACGCCTG
384 TACACGCCTA
* *
25359468 TTTTGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCT
25359516 CAGCCAGATC
Statistics
Matches: 374, Mismatches: 58, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
392 13 0.03
393 247 0.66
394 110 0.29
395 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (393 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTACAGAGTTCATTCCCAC
TCTAAGATCGGACCGGACCGAGGGTTGTTGCAGCAAGACCAGTAGAAAGATCGACAGCACGCAAG
GAGGGACTGGGCCGATCCCCGACTTGCAATTCTACCACTCCGACCGGCCTCTCCAGCCGGCTGAA
CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACA
GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAGGATCGACAACACGCA
GGAGGGATCAGGGCGATCCCTGACTTGCACATTCTGCCTCTCCGACCAACTGAGCGCCTACACGC
CTA
Found at i:25360305 original size:26 final size:26
Alignment explanation
Indices: 25360269--25360319 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
25360259 TTGACTTAGG
25360269 CATATGGAGTTCATCCCCAGTCTAAC
1 CATATGGAGTTCATCCCCAGTCTAAC
*
25360295 CATATGGAGTTCATTCCCAGTCTAA
1 CATATGGAGTTCATCCCCAGTCTAA
25360320 GATCGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATATGGAGTTCATCCCCAGTCTAAC
Found at i:25361126 original size:158 final size:156
Alignment explanation
Indices: 25360668--25361141 Score: 425
Period size: 159 Copynumber: 3.0 Consensus size: 156
25360658 AAGCATATGG
* * ** * * *
25360668 AGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCAGTAGCAGGATCGGTAGCACGCAG
1 AGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATTGATAGCACGCAG
** * * * * * *
25360733 GGGGGACCGGGCCGATCCC-AAGCTTGCGCATTCTACCTCTCCGGATGGCTGAGTATCCGCATGC
65 GGGGGACCGAACCGATCCCTGA-CTTGCGCATTATGCCTCTCCGG-TGGCTAAGCACCCGCATGC
* ** * * *
25360797 CCGTTTGGTGGGTTGGCTTAGGCATAGGG
128 TCGTTTCATGGGTTGACTTAGGCATACGA
** * * * *
25360826 AGTTCATTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAGCGGGACTGACAGCATGCA
1 AGTTCATTCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATTGATAGCACGCA
* * * * * *
25360890 GAGGGGGACC-AGACCGAT-CCTCGGCTTGCGCATTATGCCTCTCCGATTGACTCAGCACCTGAA
64 G-GGGGGACCGA-ACCGATCCCT-GACTTGCGCATTATGCCTCTCCG-GTGGCTAAGCACCCGCA
*
25360953 TGCTCGTTTCATGGGTTGACTTCGGCATACGA
125 TGCTCGTTTCATGGGTTGACTTAGGCATACGA
* * *
25360985 AGTTCATTCACAGTCCAAGATCAGACCAGACCGAGGGTTGTGGCAACAGGATTGATAGCACGCAG
1 AGTTCATTC-CAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATTGATAGCACGCAG
* * * *
25361050 GGGGGGCCGAACCGATCCCTGACTTGCACATTTTGCCTCTCCGGTCGGCTAAGCACCCGCACGCT
65 GGGGGACCGAACCGATCCCTGACTTGCGCATTATGCCTCTCCGGT-GGCTAAGCACCCGCATGCT
* * *
25361115 CATTTCATGGGTTGGCTTAGACATACG
129 CGTTTCATGGGTTGACTTAGGCATACG
25361142 GAGCTCAACC
Statistics
Matches: 248, Mismatches: 56, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.02
158 119 0.48
159 123 0.50
160 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (156 bp):
AGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATTGATAGCACGCAGG
GGGGACCGAACCGATCCCTGACTTGCGCATTATGCCTCTCCGGTGGCTAAGCACCCGCATGCTCG
TTTCATGGGTTGACTTAGGCATACGA
Found at i:25361157 original size:158 final size:159
Alignment explanation
Indices: 25360854--25361157 Score: 344
Period size: 158 Copynumber: 1.9 Consensus size: 159
25360844 GCCCCAACCG
* * * *
25360854 GACCGAGGGTTGTGGCAGCGGGACTGACAGCATGCAGAGGGGGACCAGACCGATCCTCGGCTTGC
1 GACCGAGGGTTGTGGCAACAGGACTGACAGCACGCAGAGGGGGACCAGACCGATCCTCGACTTGC
* * * * * * * *
25360919 GCATTATGCCTCTCCGATTGACTCAGCACCTGAATGCTCGTTTCATGGGTTGACTTCGGCATACG
66 ACATTATGCCTCTCCGATCGACTAAGCACCCGAACGCTCATTTCATGGGTTGACTTAGACATACG
* **
25360984 AAGTTCATTCACAGTCCAAGATCAGACCA
131 AAGCTCAACCACAGTCCAAGATCAGACCA
* * *
25361013 GACCGAGGGTTGTGGCAACAGGATTGATAGCACGCAG-GGGGGGCC-GAACCGATCC-CTGACTT
1 GACCGAGGGTTGTGGCAACAGGACTGACAGCACGCAGAGGGGGACCAG-ACCGATCCTC-GACTT
* * * * *
25361075 GCACATTTTGCCTCTCCGGTCGGCTAAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGACATA
64 GCACATTATGCCTCTCCGATCGACTAAGCACCCGAACGCTCATTTCATGGGTTGACTTAGACATA
* *
25361140 CGGAGCTCAACCCCAGTC
129 CGAAGCTCAACCACAGTC
25361158 TAAGCATACG
Statistics
Matches: 118, Mismatches: 25, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
157 2 0.02
158 84 0.71
159 32 0.27
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (159 bp):
GACCGAGGGTTGTGGCAACAGGACTGACAGCACGCAGAGGGGGACCAGACCGATCCTCGACTTGC
ACATTATGCCTCTCCGATCGACTAAGCACCCGAACGCTCATTTCATGGGTTGACTTAGACATACG
AAGCTCAACCACAGTCCAAGATCAGACCA
Found at i:25361180 original size:26 final size:26
Alignment explanation
Indices: 25361136--25361187 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25361126 TTGGCTTAGA
25361136 CATACGGAGCTCAACCCCAGTCTAAG
1 CATACGGAGCTCAACCCCAGTCTAAG
* **
25361162 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGCTCAACCCCAGTCTAAG
25361188 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (26 bp):
CATACGGAGCTCAACCCCAGTCTAAG
Found at i:25361617 original size:26 final size:26
Alignment explanation
Indices: 25361586--25361638 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25361576 GTTGGCTTAG
*
25361586 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
25361612 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
25361638 G
1 G
25361639 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:25362692 original size:25 final size:26
Alignment explanation
Indices: 25362654--25362705 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
25362644 GTTGACTTAG
25362654 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
25362680 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
25362705 G
1 G
25362706 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:25363017 original size:26 final size:27
Alignment explanation
Indices: 25362981--25363034 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
25362971 GGTTGCTTAG
25362981 GCATACGGAG-TTCATT-CCATGTCTAA
1 GCATACGGAGTTTCATTCCCA-GTCTAA
25363007 GCATACGGAGTTTCATTCCCAGTCTAA
1 GCATACGGAGTTTCATTCCCAGTCTAA
25363034 G
1 G
25363035 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 10 0.38
27 13 0.50
28 3 0.12
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (27 bp):
GCATACGGAGTTTCATTCCCAGTCTAA
Found at i:25363136 original size:11 final size:11
Alignment explanation
Indices: 25363109--25363138 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
25363099 GGCACCATCA
25363109 CCGGAGCATTG
1 CCGGAGCATTG
25363120 -CGGAGCATTG
1 CCGGAGCATTG
25363130 CCGGAGCAT
1 CCGGAGCAT
25363139 CACCGGAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.20, C:0.27, G:0.37, T:0.17
Consensus pattern (11 bp):
CCGGAGCATTG
Found at i:25363976 original size:26 final size:26
Alignment explanation
Indices: 25363926--25363978 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25363916 GTTGGCTTAG
* *
25363926 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
25363952 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
25363978 G
1 G
25363979 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:25364344 original size:26 final size:26
Alignment explanation
Indices: 25364307--25364385 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
25364297 GTTGACTTAG
25364307 GCATACGGAGTTGATCCCCAGTCTAA
1 GCATACGGAGTTGATCCCCAGTCTAA
*
25364333 GCATACGAAGTTGATCCCCAGTCTAA
1 GCATACGGAGTTGATCCCCAGTCTAA
* *
25364359 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTGATCCCCAGTCTAA
25364385 G
1 G
25364386 ATCAGACCGT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTGATCCCCAGTCTAA
Found at i:25365415 original size:157 final size:157
Alignment explanation
Indices: 25365245--25365590 Score: 353
Period size: 157 Copynumber: 2.2 Consensus size: 157
25365235 GAGGTTGTGG
* * * * * * *
25365245 CAGCGGGACCGACAGCACGCAAGGGGGATCGGGCTGATCCTTGGCTTGCGTATTATAACTCTCCA
1 CAGCAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCCTGACTTACGCATTATAA-TCTCCA
* *
25365310 G-CGGGGTCAATGCCCGTACGCTCG-TTTCGT-GAGTGGACTTAGGCATACGGAGTTCATTCCCA
65 GTC-GGGTCAACGCCCGTACGCTCGTTTTCGTCGA-TGGACTTAGGCATACAGAGTTCATTCCCA
*
25365372 GTCT-ATATC-GAACCGGACCGAGGGTTACGA
128 GTCTAAGATCAG-ACCGGACCGA-GGTTACGA
* * * * * * ***
25365402 CAGCAGGATCGACAGCACACAGGGGGGATCGAGCCGGTCCCTGACTTATGCATTATAATTTTTGG
1 CAGCAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCCTGACTTACGCATTATAATCTCCAG
* * *
25365467 TCGGGTCAACGCCCTTACGCTCGTTTTCGTCGATTGACTTAGGCATACAGAGTTCATTCTCAGTC
66 TCGGGTCAACGCCCGTACGCTCGTTTTCGTCGATGGACTTAGGCATACAGAGTTCATTCCCAGTC
* * *
25365532 TAAGATCAGACCGGACTGAGGTTGCGG
131 TAAGATCAGACCGGACCGAGGTTACGA
* * *
25365559 TAGCAGGATCAATAGCACGC-AGGGGGATCGGG
1 CAGCAGGATCGACAGCACGCAAGGGGGATCGGG
25365591 TCAATCCCCG
Statistics
Matches: 153, Mismatches: 31, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
156 32 0.21
157 105 0.69
158 15 0.10
159 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (157 bp):
CAGCAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCCTGACTTACGCATTATAATCTCCAG
TCGGGTCAACGCCCGTACGCTCGTTTTCGTCGATGGACTTAGGCATACAGAGTTCATTCCCAGTC
TAAGATCAGACCGGACCGAGGTTACGA
Found at i:25365716 original size:26 final size:26
Alignment explanation
Indices: 25365677--25365728 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25365667 GTTGACTTTG
*
25365677 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGACTTCATCCCCAGTCTAA
* * *
25365703 GCATATAGACTTCATTCGCAGTCTAA
1 GCATACAGACTTCATCCCCAGTCTAA
25365729 AACTGGATTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGACTTCATCCCCAGTCTAA
Found at i:25365892 original size:26 final size:26
Alignment explanation
Indices: 25365855--25365907 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25365845 GTTGGCTTAG
*
25365855 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
25365881 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
25365907 G
1 G
25365908 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:25366250 original size:26 final size:26
Alignment explanation
Indices: 25366220--25366272 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25366210 GTTGACTTAG
25366220 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
25366246 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
25366272 G
1 G
25366273 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:25366761 original size:26 final size:26
Alignment explanation
Indices: 25366719--25366770 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25366709 TTGGGTTAGA
25366719 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
25366745 CATACGGAGTT-ATTTCCCAGTCTAAG
1 CATACGGAGTTCA-TTCCCAGTCTAAG
25366771 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.83
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:25370015 original size:158 final size:157
Alignment explanation
Indices: 25369558--25370024 Score: 401
Period size: 159 Copynumber: 3.0 Consensus size: 157
25369548 CGGATCAGAT
* * * * * * * *
25369558 CAGATCGAGGGTTGCGACAGTAGGATCGACAGCATGTA-AGGAGATCGGGCAGGTTC-CTGGCTT
1 CAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCAGATTCTC-GGCTT
* * * * * *
25369621 GTGCTTTCTGCCTCTCCGATCGACTGAACGCCCGTACGC-CTATTTCGTCGGTTGGCTTAGGCAT
65 GCGCATTCTGCCTCTTCGGTCG-CTGAGCGCCCGTACGCTC-ATTTCGTGGGTTGGCTTAGGCAT
* ****
25369685 AGGGAGTTCATTCCATGTCTAAG-CCCCAGC
128 ACGGAGTTCATTCCATGTCTAAGATGGGA-C
* * * * * * *
25369715 CAGACCGAGGGTTGTGGTAGCAGGACCGACAGCACGGAGAGGGGGACCGGGCTGA-TCTTCGACT
1 CAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAG-GGGGGACCGGGCAGATTC-TCGGCT
* * * * * * * * * * *
25369779 TGCACATTAC-GCCTCTTCGGTCGGCTCAGCGACTGCACACTCGTTTCATGTGTTGACTTATGCA
64 TGCGCATT-CTGCCTCTTCGGTC-GCTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCA
* *
25369843 TACAGAGTTAATTCCCA-GTCTAAGATGGGAC
127 TACGGAGTTCATT-CCATGTCTAAGATGGGAC
25369874 CAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGTC-GATTCTCGGCTT
1 CAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGG-CAGATTCTCGGCTT
* *
25369938 GCGCATTCTGCCTCTTCGGCCAGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTGGGCATA
65 GCGCATTCTGCCTCTTCGGTC-GCTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATA
*
25370003 CGGAGTTTATTCCATGTCTAAG
129 CGGAGTTCATTCCATGTCTAAG
25370025 CCCCAACCGG
Statistics
Matches: 237, Mismatches: 60, Indels: 25
0.74 0.19 0.08
Matches are distributed among these distances:
157 34 0.14
158 86 0.36
159 109 0.46
160 8 0.03
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (157 bp):
CAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAGGGGGGACCGGGCAGATTCTCGGCTTG
CGCATTCTGCCTCTTCGGTCGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGATGGGAC
Found at i:25370038 original size:158 final size:159
Alignment explanation
Indices: 25369644--25370058 Score: 428
Period size: 158 Copynumber: 2.6 Consensus size: 159
25369634 CTCCGATCGA
* * * *
25369644 CTGAACGCCCGTACGC-CTATTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
1 CTGAGCGCCCGTACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAG
* * * *
25369708 CCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGACAGCACGGAGAGGGGGACCGGGCTGATCT
65 CCCCAACCAGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCTGATCT
* *
25369773 TCGACTTGCACATTACGCCTCTTCGGTCGG
130 TCGACTTGCACATTACGCCTCTTCGGCCAG
* * * * * * * * * * *
25369803 CTCAGCGACTGCACACTCGTTTCATGTGTTGACTTATGCATACAGAGTTAATTCCCA-GTCTAAG
1 CTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTAATT-CCATGTCTAAG
***** * *
25369867 ATGGGACCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAG-GGGGGACCGGG-TCGAT-
65 CCCCAACCAGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCT-GATC
* *
25369929 TCTCGGCTTGCGCATT-CTGCCTCTTCGGCCAG
129 T-TCGACTTGCACATTAC-GCCTCTTCGGCCAG
* *
25369961 CTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTGGGCATACGGAGTTTATTCCATGTCTAAGC
1 CTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGC
* * *
25370026 CCCAACCGGACCGAGGGTTGTGGTAGCAGGACC
66 CCCAACCAGACCGAGGGTTGCGGCAGCAGGACC
25370059 TGCAGCGGGA
Statistics
Matches: 197, Mismatches: 53, Indels: 13
0.75 0.20 0.05
Matches are distributed among these distances:
157 6 0.03
158 109 0.55
159 78 0.40
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
CTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCATGTCTAAGC
CCCAACCAGACCGAGGGTTGCGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCTGATCTT
CGACTTGCACATTACGCCTCTTCGGCCAG
Found at i:25371044 original size:685 final size:674
Alignment explanation
Indices: 25369322--25371480 Score: 2343
Period size: 685 Copynumber: 3.2 Consensus size: 674
25369312 ATTTTTTTGT
* * * * *
25369322 GCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTATGGCAGCATGACTGGCA
1 GCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCA
* * * *
25369387 GCGAGATCGGCAGCACGTAGAGGGGGACCGTGCTGATCCTCGACTTACGCATTATGCCT-T-TCT
66 GCGGGATCGGCAGCACGCAGAGGGGGACCGGGCTGATCCTCGACTTACGCATTATGCCTCTCTCG
* *
25369450 GACCT--GCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTA
131 GCCCTCCGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTA
*
25369513 GTCTAAGCACACAGAGTTCATTCCCAGTCTAAGATCGGA-TCAGATCAGATCGAGGGTTGCGACA
196 GTCTAAGCATACA-AGTTCATTCCCAGTCTAAGATCGGACT-AGA-C---T-GAGGGTTGCGACA
* * * * * ** * * * *
25369577 GTAGGATCGACAGCATGTAA-GGAGATCGGGCAGGTTCCTGGCTTGTGCTTTCTGCCTCTCCGAT
254 GTAGGATCGACAGCACGCAAGGGGGATCGGGC-GATCCCCAGCTTGCGCATTCTACCTCTCCAAT
* ** **
25369641 CGACTGAACGCCCGTACGCCTATTTCGT-CGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
318 CGGCTGAGTGCCCGTACGCCCGTTTCGTGC-GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * * *
25369705 AAGCCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACCGACAGCACGGAGAGGGGGACCGGGCTGA
382 AAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGA
* * * * * * *
25369770 TCTTCGACTTGCACATTACGCCTCTTCGGTCGGCTCAGCGACT-GCACACTCGTTTCATGTGTTG
447 TCCTCGACTTGCACATTATGCCTCTTCGGTCAGCTCAGCG-CTCGAACGCTCATTTCATGGGTTG
* **
25369834 ACTTATGCATACAGAGTTAATTCCCAGTCTAAGATGGGACC-AGACCGAGGGTTGCGGCAGTAGG
511 ACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGCAGTAGG
* * * * * *
25369898 ATCGACAGCACGCAGGGGGGACCGGGTCGATTCTCGGCTTGCGCATTCTGCCTCTTCGGCCAGCT
575 ATCGACAGCACGCAGAGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCT
* * *
25369963 GAGCGCCCGTACGC-TCATTTCGTGGGTTGGCTTGG
640 GAGCGCCCGCACGCTTGA-TTCGTGGGTTGGCTTAG
* * * * *
25369998 GCATACGGAGTTTATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCAGGACCTGCA
1 GCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCA
* * * * * * * *
25370063 GCGGGATCGGTAGCACACAGAAGGGGACCGAGCTAATCCCCGACTTGCGCATTATGCCTATCT-G
66 GCGGGATCGGCAGCACGCAGAGGGGGACCGGGCTGATCCTCGACTTACGCATTATGCCTCTCTCG
* * * * *
25370127 G--C-CAGCTGAGCACCCACACGCTCGTTTCATGGGTTGACTT-CGCATACGAAGTTCATCCCTA
131 GCCCTCCGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTA
* * ** * * * * *
25370188 GTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATCAGACCGGACTGAGGGTTACCACCGCAAGA
196 GTCTAAGCATAC-AAGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCGACAGTAGGA
* * * * *
25370253 TCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCAACTTGCGCATTCTACCTCTCCCA-CGGACT
260 TCGACAGCACGCAAGGGGGATCGGG-CGATCCCCAGCTTGCGCATTCTACCTCTCCAATCGG-CT
* * * *
25370317 GAGTGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAG-CC
323 GAGTGCCCGTACGCCCGTTTCGTGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
* * * * * * *
25370381 CAGTCGGATCGAGGGTTGTCGCAGCGGGACCTG-CAGCACACAAAGGGGGATCGGGCCAATCC-C
388 CAGCCAGATCGAGGGTTGTGGCAGCGGGACC-GACAGCACGCAGAGGGGGACCGGGCCGATCCTC
* * * *
25370444 TGGCTTGCACATTATGCCTCTTCGATCAGCTCAGCGCTCGTACGCTCATTTCGTGGGTTGACTTA
452 -GACTTGCACATTATGCCTCTTCGGTCAGCTCAGCGCTCGAACGCTCATTTCATGGGTTGACTTA
*
25370509 TGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGTAGGATCGAC
516 TGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGTAGGATCGAC
* * *
25370574 AGCACGCAGTAGGGGACTGGGCCGATCCCCAGCTTACGCATTCTACCTCTCCGGCCAGCTGAGCG
581 AGCACGCAG-AGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCG
*
25370639 CTCGCACGCTTGATTCGTGGGTTGGCTTAG
645 CCCGCACGCTTGATTCGTGGGTTGGCTTAG
* * * *
25370669 GCATACGAAGTTCATTCGATGTCTAAGCCCCAGCCGGACCGAAGGTTGTGGCAGTAGGACCGACA
1 GCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCA
** *
25370734 GCGGGATCGATAGCACGCAGAGGGGGATCGGGCTGATCC-CTGACTTACGCATTATGCCTCTCCA
66 GCGGGATCGGCAGCACGCAGAGGGGGACCGGGCTGATCCTC-GACTTACGCATTATGCCTCT-C-
* * *
25370798 GTCGGCCTCTCCGGTCGATTGAGCGCTCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAG
128 -TCGGCC-CTCC-G-C---TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
*
25370863 TTCATCCCTAGTCTAAGCATACATAGTTCATTCCCAGTCTAAGATTGGACTAGACTGAGGGTTGC
186 TTCATCCCTAGTCTAAGCATACA-AGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGC
* * *
25370928 GTCAGTAGGATCGACAGCACGCAAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTACCCCTT
250 GACAGTAGGATCGACAGCACGCAAGGGGGATCGGG-CGATCCCCAGCTTGCGCATTCTACCTCTC
* * * * *
25370993 CAATCGGTTGAGTGCCCATACACCCGTTTCGTGCATTGGCTTAGGCATAGGGAATTCATTCCATG
314 CAATCGGCTGAGTGCCCGTACGCCCGTTTCGTGCGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * * * *
25371058 TCTAAGCCCCAGCCAGATCGAGGCTTGTGGCAGCGAGATCGACAGTACGCAGAGGGGGACCGAGC
379 TCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGC
* * * * * * *
25371123 CGATCCTCGATTTGCGCATTATGCCTCTTCGGCCTGTTCAGCGCCCGAACGCTCATTTCATTGGT
444 CGATCCTCGACTTGCACATTATGCCTCTTCGGTCAGCTCAGCGCTCGAACGCTCATTTCATGGGT
* * * ** * * * * * **
25371188 TGACTTATGCATACGGAGTTCATTGCCAGTCTAAGATCAAATGGGATCGAAGGTTACGGTAGCGG
509 TGACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGTAG
* * * *** *
25371253 GATCTACAGCACGCA-AGAGGGA-TCGGACTGATCCCCGGCTTGCGCATTCTGCCTCTCCAATCG
574 GATCGACAGCACGCAGAG-GGGACT-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCA
* * *
25371316 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAGGACTGA-
637 GCTGAGCGCCCGCACGCTTGATTCGTGGGTT-GG-CTTAG
* * * * *
25371355 GCATACGGAGTTCATTCCATGTCTAAGCCCC-GATCGGACTGAGGGTTGTGGTAGCA-GACTGGC
1 GCATACGAAGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCAGGACCGGC
* **
25371418 AGCGGGATCGGCAGCACGCAGAGGGGGACCGGGCTGATCCTCGGCTTGTGCATTATGCCTCTC
65 AGCGGGATCGGCAGCACGCAGAGGGGGACCGGGCTGATCCTCGACTTACGCATTATGCCTCTC
25371481 CATCGGCTGG
Statistics
Matches: 1225, Mismatches: 216, Indels: 76
0.81 0.14 0.05
Matches are distributed among these distances:
669 3 0.00
670 196 0.16
671 264 0.22
672 4 0.00
674 2 0.00
675 58 0.05
676 139 0.11
677 2 0.00
678 2 0.00
679 1 0.00
680 1 0.00
681 1 0.00
684 34 0.03
685 299 0.24
686 215 0.18
687 4 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (674 bp):
GCATACGAAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGGCA
GCGGGATCGGCAGCACGCAGAGGGGGACCGGGCTGATCCTCGACTTACGCATTATGCCTCTCTCG
GCCCTCCGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTA
GTCTAAGCATACAAGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCGACAGTAGGAT
CGACAGCACGCAAGGGGGATCGGGCGATCCCCAGCTTGCGCATTCTACCTCTCCAATCGGCTGAG
TGCCCGTACGCCCGTTTCGTGCGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
CCAGATCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCTCGACT
TGCACATTATGCCTCTTCGGTCAGCTCAGCGCTCGAACGCTCATTTCATGGGTTGACTTATGCAT
ACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGCAGTAGGATCGACAGCAC
GCAGAGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCA
CGCTTGATTCGTGGGTTGGCTTAG
Found at i:25372305 original size:26 final size:26
Alignment explanation
Indices: 25372276--25372328 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25372266 GTTGGCTTAG
*
25372276 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
25372302 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
25372328 G
1 G
25372329 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:25373050 original size:26 final size:26
Alignment explanation
Indices: 25373013--25373065 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25373003 GTTGACTTAG
25373013 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
25373039 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
25373065 G
1 G
25373066 ATCAAACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:25373729 original size:26 final size:26
Alignment explanation
Indices: 25373700--25373749 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
25373690 AACTTAGGGA
25373700 TACGGAGTTCA-TCCGCAGTCTAAGCG
1 TACGGAGTTCATTCC-CAGTCTAAGCG
25373726 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
25373750 ATCGAATCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:25374187 original size:157 final size:156
Alignment explanation
Indices: 25373726--25374213 Score: 451
Period size: 159 Copynumber: 3.1 Consensus size: 156
25373716 AGTCTAAGCG
*** * * *
25373726 TACGGAGTTCATTCCCAGTCTAAGATCGAATCAGAGTAAGGGTTGCGACAGTAGGATCGACGGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGC-ATAGCAGGATCGACAGCA
* * * * * * * * *
25373791 CGCAAGGGGGACCAGGTCGATCCCCAGCTTGCGTATTCTGCCTCTCCGGCCGGTTGAGCGCTCGT
65 CACAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCGCCCGC
* *
25373856 ACGCCCGTTTCATGGGTTCGCTTAGGCA
130 ACGCTCGTTTCGTGGGTT-GCTTAGGCA
* ** * ** * * ** * *
25373884 TAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAAATCGAGGGTTGTGGTAGCGGGA-CCAGCAG
1 TACGGAGTTCATTCCCA-GTCTAAGATCGAATCAGACCGAGGGTTG-CATAGCAGGATCGA-CAG
* * * * * * * * *
25373947 CA-AGCAGAAGAGGACCGGGTCGATCCTCGGCTTGCGCATTATACCTCTTCGATCGGTTTAGTGT
63 CACA-CAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCGC
* * *
25374011 CAGCACGCTCATTTCGTGGGTTGACTTATGCA
126 CCGCACGCTCGTTTCGTGGGTTG-CTTAGGCA
* *
25374043 TACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCATAGCAGGATCGACAGCAC
1 TACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCATAGCAGGATCGACAGCAC
* *
25374108 ACAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCACCCGCA
66 ACAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCGCCCGCA
* *
25374173 CACTCGTTTTGTGGGTTGGCTTAGGCA
131 CGCTCGTTTCGTGGGTT-GCTTAGGCA
25374200 TACGGAGTTCATTC
1 TACGGAGTTCATTC
25374214 AATGTCTAAG
Statistics
Matches: 249, Mismatches: 71, Indels: 21
0.73 0.21 0.06
Matches are distributed among these distances:
157 88 0.35
158 59 0.24
159 99 0.40
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCATAGCAGGATCGACAGCAC
ACAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGCTTAGGCA
Found at i:25374233 original size:26 final size:25
Alignment explanation
Indices: 25374197--25374248 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
25374187 GTTGGCTTAG
25374197 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACGGAGTTCATTCAA-GTCTAA
*
25374223 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCAAGTCTAA
25374248 G
1 G
25374249 ATTTGGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCAAGTCTAA
Found at i:25374630 original size:22 final size:22
Alignment explanation
Indices: 25374605--25374647 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
25374595 TTTATGCATG
25374605 CCTCTACCAAATACAAGGATCA
1 CCTCTACCAAATACAAGGATCA
25374627 CCTCTACCAAATACAAGGATC
1 CCTCTACCAAATACAAGGATC
25374648 CCCGACTTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.40, C:0.33, G:0.09, T:0.19
Consensus pattern (22 bp):
CCTCTACCAAATACAAGGATCA
Found at i:25375647 original size:26 final size:26
Alignment explanation
Indices: 25375611--25375663 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25375601 GTTGACTTAG
25375611 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
25375637 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
25375663 G
1 G
25375664 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:25381758 original size:26 final size:26
Alignment explanation
Indices: 25381722--25381774 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25381712 GTTGGCTTAG
* *
25381722 GCATATGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
25381748 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
25381774 G
1 G
25381775 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:25382628 original size:26 final size:26
Alignment explanation
Indices: 25382592--25382644 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25382582 GTTGGCTTAG
25382592 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCACA-GTCTAA
25382618 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
25382644 G
1 G
25382645 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:25382779 original size:17 final size:16
Alignment explanation
Indices: 25382740--25382779 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
25382730 AACTGGCGGC
25382740 ATTGGGGGTTCCGGTG
1 ATTGGGGGTTCCGGTG
25382756 ATTGGGGGTTCCGGTG
1 ATTGGGGGTTCCGGTG
25382772 ATTGGGGG
1 ATTGGGGG
25382780 CTGGGGGGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.07, C:0.10, G:0.53, T:0.30
Consensus pattern (16 bp):
ATTGGGGGTTCCGGTG
Found at i:25383640 original size:159 final size:159
Alignment explanation
Indices: 25383340--25383678 Score: 376
Period size: 159 Copynumber: 2.1 Consensus size: 159
25383330 ATCCCCGGTC
** * *
25383340 TAAGCATACAAAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGATCGAGGGTTGCGGTAGCAGGATCG
** * * *** * *
25383405 ACAGCACGTAGAGGGGGATCAGACCGATCCCCGGCTTGCACATTATGCCTCTCCGGTCGGCTCAA
66 ACAGCACACAGAGAGGGACCAGACCGATCCCAAACTTGCACATTATGCCTCTCCGGTCCGATCAA
* * *
25383470 CGCCTGCATGCTTATTTCGTGGGTTGACT
131 CGCCCGCATGCTCATTTCATGGGTTGACT
* *
25383499 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGATCGAGGGTTGCGGTAGTTAGGATC
1 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGATCGAGGGTTGCGGTAG-CAGGATC
* * ** * ** * *
25383564 GACAGCACACAGA-AGTGACCGGTTCGGTCCCTAAACTTGCGTATTTTGCCTCTCCGG-CCGATG
65 GACAGCACACAGAGAGGGACCAGACCGATCCC-AAACTTGCACATTATGCCTCTCCGGTCCGATC
* * *
25383627 AGCGCCCGTATGCTCATTTCATGGGTTGGCT
129 AACGCCCGCATGCTCATTTCATGGGTTGACT
25383658 TAAGCATACGGAGTTCATTCC
1 TAAGCATACGGAGTTCATTCC
25383679 ATACCTAAAG
Statistics
Matches: 147, Mismatches: 31, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
159 111 0.76
160 36 0.24
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.26
Consensus pattern (159 bp):
TAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGATCGAGGGTTGCGGTAGCAGGATCG
ACAGCACACAGAGAGGGACCAGACCGATCCCAAACTTGCACATTATGCCTCTCCGGTCCGATCAA
CGCCCGCATGCTCATTTCATGGGTTGACT
Found at i:25384144 original size:157 final size:157
Alignment explanation
Indices: 25383900--25384200 Score: 410
Period size: 157 Copynumber: 1.9 Consensus size: 157
25383890 CAACCGGACT
* * * *
25383900 GAGGGTTGTGGTAGCGGACCGACAGCACGCAGAGGGGGACTAGGCGATCCCTGGCTTACGCATTA
1 GAGGGTTGCGGTAGCAGACCGACAGCACGCAGAGGGGGACCAGGCGATCCCTAGCTTACGCATTA
* *
25383965 TGCCTCTCCGGCAGGCTCAGCACCCGAATGCTTG-TTCATGGGTTGACTTAGGCATACGAAGTTC
66 TGCCTCTCCGGCAGGCTCAGCACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTC
25384029 ATTCCCA-GTCTAAGATCAGACCAGACC
131 ATT-CCATGTCTAAGATCAGACCAGACC
* * *
25384056 GAGGGTTGCGGTAGCAAGATCGACAGCACGCAG-GGGGGACCAGGTCGGTCCCTAGCTTGCGCAT
1 GAGGGTTGCGGTAGC-AGACCGACAGCACGCAGAGGGGGACCAGG-CGATCCCTAGCTTACGCAT
* * * * * * *
25384120 TTTGCCTCTCTGGCCGGTTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGT
64 TATGCCTCTCCGGCAGGCTCAGCACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGT
25384185 TCATTCCATGTCTAAG
129 TCATTCCATGTCTAAG
25384201 CCCTAGCAGG
Statistics
Matches: 125, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
156 24 0.19
157 62 0.50
158 39 0.31
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
GAGGGTTGCGGTAGCAGACCGACAGCACGCAGAGGGGGACCAGGCGATCCCTAGCTTACGCATTA
TGCCTCTCCGGCAGGCTCAGCACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTC
ATTCCATGTCTAAGATCAGACCAGACC
Found at i:25384214 original size:158 final size:155
Alignment explanation
Indices: 25383842--25384214 Score: 396
Period size: 157 Copynumber: 2.4 Consensus size: 155
25383832 TGTTACGGTC
* * * * * * * *
25383842 CGTTCAT-GGTTGGCCTTAGGC-TAGGGAGTTCATTTCAATGTCGAACCCCAACCGGACTGAGGG
1 CGTTCATGGGTTGG-CTTAGGCATACGAAGTTCA-TTCCATGTCTAAGCCCAGCAGGACCGAGGG
* * * *
25383905 TTGTGGTAGCGGACCGACAGCACGCAGAGGGGGACTAGGCGATCCCTGGCTTACGCATTATGCCT
64 TTGCGGTAGCAGACCGACAGCACGCAGAGGGGGACCAGGCGATCCCTAGCTTACGCATTATGCCT
*
25383970 CTCCGGCAGGCTCAGCACCCGAATGCT
129 CTCCGGCAGGCTCAGCACCCGAACGCT
* * **
25383997 TGTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCA-GACCGAGG
1 CGTTCATGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCCCAG--CAGGACCGAGG
* * * *
25384060 GTTGCGGTAGCAAGATCGACAGCACGCAG-GGGGGACCAGGTCGGTCCCTAGCTTGCGCATTTTG
63 GTTGCGGTAGC-AGACCGACAGCACGCAGAGGGGGACCAGG-CGATCCCTAGCTTACGCATTATG
* * * * *
25384124 CCTCTCTGGCCGGTTGAGCACCCGTACGCT
126 CCTCTCCGGCAGGCTCAGCACCCGAACGCT
25384154 CGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCTAGCAGGACCG
1 CG-TTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCC-AGCAGGACCG
25384215 GCAGCAAGAT
Statistics
Matches: 177, Mismatches: 30, Indels: 19
0.78 0.13 0.08
Matches are distributed among these distances:
155 22 0.12
156 43 0.24
157 65 0.37
158 45 0.25
159 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (155 bp):
CGTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCAGCAGGACCGAGGGTT
GCGGTAGCAGACCGACAGCACGCAGAGGGGGACCAGGCGATCCCTAGCTTACGCATTATGCCTCT
CCGGCAGGCTCAGCACCCGAACGCT
Found at i:25384724 original size:157 final size:157
Alignment explanation
Indices: 25384312--25384737 Score: 430
Period size: 159 Copynumber: 2.7 Consensus size: 157
25384302 GCATGTAGAA
* *
25384312 GGGACCGAGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGGCTA-GCTGAGCGCCCGCACGC-C
1 GGGACCGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGC-AGGCTGAGCGCCCGCACGCTC
* * * * *
25384375 TGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGG
65 -GTTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCATGTCTAAGACCCAACCAGACCGAGGG
*
25384440 TTGTGGCAGCAGGACCGACAGCACGCAGAGG
128 TTGTGGCAGCAAGACCGACAGCACGCA-AGG
* * * * * * * ** * * *
25384471 GGGACTGGGTCGATCCCTAGTTTGTGCATTATGCCTCTCCGGCAGGCTCAATGCCCGAATGCTTG
1 GGGACCGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTCG
** * * **
25384536 TTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGT
66 TTTCGTGGGTTGGCTTAGGCATACG-AGTTCATT-CCATGTCTAAGACCCAACCAGACCGAGGGT
* * * *
25384600 TGTGGTAGTAAGATCGATAGCACGC-AGG
129 TGTGGCAGCAAGACCGACAGCACGCAAGG
* * * *
25384628 GGGACCGAGTCAATCCCCAGCTTACGGATTCTGCCTCTCTGGTC-GGCTGAGCGCCCGCACGCTC
1 GGGACCGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGG-CAGGCTGAGCGCCCGCACGCTC
*
25384692 GTTTCGTGGGTTGGCTTAGGCATACAGTGTTCATTCCATGTCTAAG
65 GTTTCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCATGTCTAAG
25384738 CATACGGAGT
Statistics
Matches: 210, Mismatches: 50, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 85 0.40
158 4 0.02
159 115 0.55
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GGGACCGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAAGACCCAACCAGACCGAGGGTTG
TGGCAGCAAGACCGACAGCACGCAAGG
Found at i:25384749 original size:26 final size:26
Alignment explanation
Indices: 25384711--25384763 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25384701 GTTGGCTTAG
*
25384711 GCATACAGTGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
25384737 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
25384763 G
1 G
25384764 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:25384864 original size:183 final size:183
Alignment explanation
Indices: 25384554--25384899 Score: 487
Period size: 183 Copynumber: 1.9 Consensus size: 183
25384544 GTTGACTTAG
* * *
25384554 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGTAAGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAAGATCGACA
* * * * * *
25384619 GCACGCAGGGGGACCGAGTCAATCCCCAGCTTACGGATTCTGCCTCTCTGGTCGGCTGAGCGCCC
66 ACACGCAGGGGGACCAAGCCAATCCCCAGCTTACGCATTCTACCTCTCTGATCGGCTGAGCGCCC
* * *
25384684 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGTGTTCATTCCATGTCTAA
131 GCACACTCGTGTCGTGGGTTGACTTAGGCATACAGTGTTCATTCCATGTCTAA
* * *
25384737 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGA-CTGAC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAAGATC-GAC
* * * * *
25384801 AACACGTAGGGGGACCAAGCCGATCTCCAGCTTGCGCATTCTACCTCTCTGATCGGTTGAGCGCC
65 AACACGCAGGGGGACCAAGCCAATCCCCAGCTTACGCATTCTACCTCTCTGATCGGCTGAGCGCC
*
25384866 TGCACACTCGTGTCGTGGGTTGACTTAGGCATAC
130 CGCACACTCGTGTCGTGGGTTGACTTAGGCATAC
25384900 GAAGTTCATC
Statistics
Matches: 141, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
182 1 0.01
183 140 0.99
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (183 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAAGATCGACA
ACACGCAGGGGGACCAAGCCAATCCCCAGCTTACGCATTCTACCTCTCTGATCGGCTGAGCGCCC
GCACACTCGTGTCGTGGGTTGACTTAGGCATACAGTGTTCATTCCATGTCTAA
Found at i:25385052 original size:159 final size:157
Alignment explanation
Indices: 25384737--25385079 Score: 397
Period size: 159 Copynumber: 2.2 Consensus size: 157
25384727 CCATGTCTAA
* **
25384737 GCATACGGAGTTCATTCCC-AGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGACTGAC
1 GCATACGGAGTTCA-TCCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACTGAC
* * * *
25384801 AACACGTAGGGGGACCAAGCCGATCTCCAGCTTGCGCATTCTACCTCTCTGATCGGTTGAGCGCC
65 AACACGTAGGGGGACCAAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGCTTGAGCGCC
*
25384866 TGCACACTCGTGTCGTGGGTTGACTTAG
130 TGCACACTCGTGTCATGGGTTGACTTAG
* *
25384894 GCATACGAAGTTCATCCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACATCAGGA-TCGAC
1 GCATACGGAGTTCATCCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACT-GAC
* * ** * * *
25384958 AGCATGTAGGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCTGCTT-AGC
65 AACACGTA--GGGGGACCAAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACC-GCTTGAGC
* * *
25385022 G-CTAGCACGCTCGTTTCATGGGTTGGCTTAG
127 GCCT-GCACACTCGTGTCATGGGTTGACTTAG
* * *
25385053 GCATATGGAGTTCATTCCTTGTCTAAG
1 GCATACGGAGTTCATCCCTAGTCTAAG
25385080 CATACGGAGT
Statistics
Matches: 156, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
156 5 0.03
157 58 0.37
158 2 0.01
159 88 0.56
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATCCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACTGACA
ACACGTAGGGGGACCAAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGCTTGAGCGCCT
GCACACTCGTGTCATGGGTTGACTTAG
Found at i:25385083 original size:26 final size:26
Alignment explanation
Indices: 25385053--25385105 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25385043 GTTGGCTTAG
* **
25385053 GCATATGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
25385079 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
25385105 G
1 G
25385106 ATCTGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:25385300 original size:26 final size:26
Alignment explanation
Indices: 25385263--25385315 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25385253 GTTGACTTAG
*
25385263 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
25385289 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
25385315 G
1 G
25385316 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:25386855 original size:26 final size:26
Alignment explanation
Indices: 25386806--25386858 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25386796 GTTGGCTTAG
**
25386806 GCATATGGAGTTCATTTTATGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
25386832 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATATGGAGTTCATT-CCATGTCTAA
25386858 G
1 G
25386859 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATGTCTAA
Found at i:25387238 original size:26 final size:26
Alignment explanation
Indices: 25387186--25387238 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25387176 GATGACTTAG
* *
25387186 GCATACGAAGTTCATCCCCAGTGTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
25387212 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
25387238 G
1 G
25387239 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:25387572 original size:159 final size:157
Alignment explanation
Indices: 25387409--25387712 Score: 346
Period size: 157 Copynumber: 1.9 Consensus size: 157
25387399 CCAGCCAGAC
* ***
25387409 TGAGGGTTGTC-GCAG-CGGGATCGACAGCACACAGAGGGGCACCAGGCTGATCCCTGGCTTGCA
1 TGAGGGTTG-CGGCAGTC-GGATCG-CAGCACACAG-GGGGCACCAGGCCGATCCCCAACTTGCA
** * * *
25387472 CATTATGCCTCTCCGGTC-AGCTCAGCACCCGAATGCTCGTTTCGTGGGTTGACTTAGGCATACG
62 CATTATGCCTCTCCAATCGA-CTCAGCACCCGAACGCTCGTTTCGTGCGTTGACTTAGGCATACA
25387536 GAGTTCATTCCCA-GTCTAAGATTGGATCGGAT
126 GAGTTCATT-CCATGTCTAAGATTGGATCGGAT
* ** * ** *
25387568 TGAGGGTTGCGGCAGTCGGATTGCAGCACGTAGGGGGGACTGGGCCGATCCCCAACTTGCGCATT
1 TGAGGGTTGCGGCAGTCGGATCGCAGCACACAGGGGGCACCAGGCCGATCCCCAACTTGCACATT
* * * *
25387633 CTGCCTCTCCAATCGACTGAGCACCCGCACGCTCGTTTCGTGCGTTGGCTTAGGCATACAGAGTT
66 ATGCCTCTCCAATCGACTCAGCACCCGAACGCTCGTTTCGTGCGTTGACTTAGGCATACAGAGTT
25387698 CATTCCATGTCTAAG
131 CATTCCATGTCTAAG
25387713 CATATGGAGT
Statistics
Matches: 121, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
156 3 0.02
157 89 0.74
158 10 0.08
159 18 0.15
160 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
TGAGGGTTGCGGCAGTCGGATCGCAGCACACAGGGGGCACCAGGCCGATCCCCAACTTGCACATT
ATGCCTCTCCAATCGACTCAGCACCCGAACGCTCGTTTCGTGCGTTGACTTAGGCATACAGAGTT
CATTCCATGTCTAAGATTGGATCGGAT
Found at i:25388013 original size:196 final size:196
Alignment explanation
Indices: 25387585--25388013 Score: 515
Period size: 196 Copynumber: 2.2 Consensus size: 196
25387575 TGCGGCAGTC
* * * *
25387585 GGATT-GCAGCACGTAGGGGGGA-CTGGGCCGATCCCCAACTTGCGCATTCTGCCTCTCCAATCG
1 GGATTGGCAGCACGTAGGGGGGATC-GGGCCGATCCTCGACTTACGAATTCTGCCTCTCCAATCG
25387648 ACTGAGCACCCGCACGCTCGTTTCGTGCGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
65 ACTGAGCACCCGCACGCTCGTTTCGTGCGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
* * ** * *
25387713 CATATGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGTGACAGCAGGACCAGCAG
130 CATATAGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGATTCAGACAACAGGACCAGCAA
*
25387778 CC
195 CA
* * ** * * * *
25387780 GGATCGACAGCATATAGGGGGGATCGAGCCGATCCTCGACTTACGAATTTTGCCTCTCCAGTCGG
1 GGATTGGCAGCACGTAGGGGGGATCGGGCCGATCCTCGACTTACGAATTCTGCCTCTCCAATCGA
* * * * *
25387845 CTGAGCGCTCGCACGCTCGTTTCGTG-GCTTGGCTTTGGCGTACGGAGTTCATTCCATGTCTAAG
66 CTGAGCACCCGCACGCTCGTTTCGTGCG-TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
* * * **
25387909 CATATAGAGTTCATTTCCAGTCTAAGATCGGACTGGACTGAGGATTACAG-CAACAGGACCAGCA
130 CATATAGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGATT-CAGACAACAGGACCAGCA
25387973 ACA
194 ACA
* **
25387976 GGATTGGCAGCACGCAGGGGGGATCGGGCTAATCCTCG
1 GGATTGGCAGCACGTAGGGGGGATCGGGCCGATCCTCG
25388014 GCTTGTGCAT
Statistics
Matches: 193, Mismatches: 37, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
195 5 0.03
196 186 0.96
197 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (196 bp):
GGATTGGCAGCACGTAGGGGGGATCGGGCCGATCCTCGACTTACGAATTCTGCCTCTCCAATCGA
CTGAGCACCCGCACGCTCGTTTCGTGCGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
ATATAGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGATTCAGACAACAGGACCAGCAAC
A
Found at i:25388120 original size:26 final size:26
Alignment explanation
Indices: 25388091--25388143 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25388081 GTTAACTTAG
25388091 GCATACAGAGTTCAACCCCAGTCTAA
1 GCATACAGAGTTCAACCCCAGTCTAA
* **
25388117 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAACCCCAGTCTAA
25388143 G
1 G
25388144 ATCGAAATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCAACCCCAGTCTAA
Found at i:25388470 original size:26 final size:26
Alignment explanation
Indices: 25388434--25388486 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25388424 GTTGGCTTAG
25388434 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
25388460 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
25388486 G
1 G
25388487 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:25389473 original size:26 final size:26
Alignment explanation
Indices: 25389444--25389494 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25389434 TAGCTTAGGT
*
25389444 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
25389470 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
25389495 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:25390195 original size:26 final size:26
Alignment explanation
Indices: 25390165--25390217 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25390155 GTTGACTTAG
*
25390165 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
* *
25390191 GCATACGGAGTTTATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
25390217 G
1 G
25390218 ATCATATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:25390480 original size:159 final size:158
Alignment explanation
Indices: 25390227--25390738 Score: 389
Period size: 159 Copynumber: 3.2 Consensus size: 158
25390217 GATCATATCG
* * * * *
25390227 GATCGAGGGTTATGGCAGCAGGATCGATAGCATGCAGGGGGGACCGGGCCGATCCTCGGCTTGCG
1 GATCGAGGGTTATGGCAGCAGGACCGACAGCACGCAGAGGGGACCGGGCCGATCCTCGACTTGCG
* * ** * *
25390292 CATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGG
66 CATTCTGCCTCTCCGACCGGCTCAACGCCCGCACACCCATTTCATGGGTTAACTTAGGCATACGA
25390357 AGTTCATTCTATGTCTAAGCCCCAGCCA
131 AGTTCATTCTATGTCTAAGCCCCAGCCA
* ** * *
25390385 GATCGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGCAGGGGATCGGGCCGATCCTCGACTTTC
1 GATCGAGGGTTATGGCAGCAGGACCGACAGCACGCAG-AGGGGACCGGGCCGATCCTCGACTTGC
* * * * * **
25390450 GCATTTTGCCTCTCCGGCTGGCTCAACGCCCGTACACTCATTTTGTGGGTTAACTTAGGCATACG
65 GCATTCTGCCTCTCCGACCGGCTCAACGCCCGCACACCCATTTCATGGGTTAACTTAGGCATACG
* * ** *
25390515 AAGTTCATTCCCA-GTGTAAGATCTGATCAGACTGA
130 AAGTTCATT-CTATGTCTAAG--C--CCCAG-C-CA
* * * * * * * * * * *
25390550 GGGTTGCGGCAGTAGTACTAGCAGCAAGATCGACAGCACGTAGGGGGGACCGGGTCGATCCTTGG
1 -GATCGAGG--GT--TA-TGGCAGCAGGACCGACAGCACGCAGAGGGGACCGGGCCGATCCTCGA
* ** * * * * **
25390615 CTTGCGCATTCTGCCTCTCCGGCCTACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGC
60 CTTGCGCATTCTGCCTCTCCGACCGGCTCAACGCCCGCACACCCATTTCATGGGTTAACTTAGGC
* * * *
25390680 ATACGAAGTTCATTCCATGTTTAAGCCCCAACCG
125 ATACGAAGTTCATTCTATGTCTAAGCCCCAGCCA
* *
25390714 GA-CTGAGGGTTGTGGCAGCAAGACC
1 GATC-GAGGGTTATGGCAGCAGGACC
25390739 AGTAATGGGA
Statistics
Matches: 270, Mismatches: 68, Indels: 32
0.73 0.18 0.09
Matches are distributed among these distances:
158 42 0.16
159 91 0.34
160 2 0.01
161 3 0.01
163 7 0.03
164 1 0.00
165 2 0.01
166 7 0.03
168 3 0.01
169 3 0.01
170 90 0.33
171 19 0.07
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GATCGAGGGTTATGGCAGCAGGACCGACAGCACGCAGAGGGGACCGGGCCGATCCTCGACTTGCG
CATTCTGCCTCTCCGACCGGCTCAACGCCCGCACACCCATTTCATGGGTTAACTTAGGCATACGA
AGTTCATTCTATGTCTAAGCCCCAGCCA
Found at i:25390720 original size:170 final size:171
Alignment explanation
Indices: 25390409--25390731 Score: 382
Period size: 170 Copynumber: 1.9 Consensus size: 171
25390399 GCAGTGGGAC
* * * *
25390409 CGACAGCACGCAGCAGGGGATCGGGCCGATCCTCGACTTTCGCATTTTGCCTCTCCGGCTGGCTC
1 CGACAGCACGCAGCAGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCTGACTC
* ** * *
25390474 AACGCCCGTACACTCATTTTGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTGTAAGATCT
66 AACGCCCGCACACTCATTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTGTAAGACCC
* *
25390539 GATCAGACTGAGGGTTGCGGCAGTAGTACTAGCAGCAAGAT
131 AACCAGACTGAGGGTTGCGGCAGTAGTACTAGCAGCAAGAT
* * * * *
25390580 CGACAGCACGTAG-GGGGGACCGGGTCGATCCTTGGCTTGCGCATTCTGCCTCTCCGGCCT-ACT
1 CGACAGCACGCAGCAGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGG-CTGACT
* * * ** * *
25390643 GAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTTTAAGCC
65 CAACGCCCGCACACTCATTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCA-GTGTAAGAC
* *
25390707 CCAACCGGACTGAGGGTTGTGGCAG
129 CCAACCAGACTGAGGGTTGCGGCAG
25390732 CAAGACCAGT
Statistics
Matches: 125, Mismatches: 25, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
169 3 0.02
170 108 0.86
171 14 0.11
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (171 bp):
CGACAGCACGCAGCAGGGGACCGGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCTGACTC
AACGCCCGCACACTCATTTCATGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTGTAAGACCC
AACCAGACTGAGGGTTGCGGCAGTAGTACTAGCAGCAAGAT
Found at i:25390913 original size:25 final size:26
Alignment explanation
Indices: 25390862--25390913 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25390852 CTTGACTTAG
25390862 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
25390888 GCATATGGAGTTCAT-TCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
25390913 G
1 G
25390914 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:25392247 original size:26 final size:26
Alignment explanation
Indices: 25392211--25392266 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
25392201 TGGGTTGACT
25392211 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
25392237 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
25392263 TAAG
1 TAAG
25392267 TTTAGATCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:25393090 original size:26 final size:26
Alignment explanation
Indices: 25393056--25393105 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
25393046 GACTTAGGCA
25393056 TACGGAGTTCA-TCCCTAGTCTAAGTG
1 TACGGAGTTCATTCCC-AGTCTAAGTG
*
25393082 TACGTAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
25393106 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGTG
Found at i:25393592 original size:26 final size:26
Alignment explanation
Indices: 25393555--25393607 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25393545 GTTGGCTTAG
25393555 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
25393581 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
25393607 G
1 G
25393608 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:25394888 original size:26 final size:26
Alignment explanation
Indices: 25394852--25394904 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25394842 CCGGTCTAAT
25394852 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25394878 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25394904 C
1 C
25394905 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25395260 original size:26 final size:26
Alignment explanation
Indices: 25395219--25395271 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25395209 CCAATCTGAT
*
25395219 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
25395245 CTTAGACTAGGG-ATGAAATCTGTATG
1 CTTAGACT-GGGAATGAAATCCGTATG
25395271 C
1 C
25395272 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:25395345 original size:11 final size:11
Alignment explanation
Indices: 25395329--25395353 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
25395319 CAGTTAGGCT
25395329 CTCTGACGATG
1 CTCTGACGATG
25395340 CTCTGACGATG
1 CTCTGACGATG
25395351 CTC
1 CTC
25395354 GGTGATGGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.32, G:0.24, T:0.28
Consensus pattern (11 bp):
CTCTGACGATG
Found at i:25395787 original size:159 final size:156
Alignment explanation
Indices: 25395456--25396117 Score: 606
Period size: 159 Copynumber: 4.2 Consensus size: 156
25395446 GCTCCGTATG
* * * *
25395456 CTTAGACATGGAATGAACTCCGTATTCCTAAGCCAACCCGA-GAAACGAGCGTACGAGCGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCC-ACGAAACGAGCGTACGGGCACT-AA
* * * * *
25395520 -CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATTGACTCGGTCCCCCCTGTGTGCTATCGATC
64 GCC-GTCGAAGAGGCATAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTCTGTGCTATCGATC
*
25395584 CTGCTGCTACAACCCTCTA-TCTGGTCTGAT
128 CTGCTGCCACAACCCTC-AGTCT-GTCTGAT
* * * *
25395614 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACAAGCGTGCGGGCACTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCACTAAG
* * *
25395678 CCAGCCGAATAGGCATAATGCACAAGCCGGGGATCGACCCGGTGCCCCCCTCTGTGCTGTCGATC
65 CC-GTCGAAGAGGCATAATGCACAAGCCGGGGATCGACCCGGT-CCCCCCTCTGTGCTATCGATC
**
25395743 CTGCTGCCGTAACCCTCAGTCTAGTCTGAT
128 CTGCTGCCACAACCCTCAGTCT-GTCTGAT
*
25395773 CTTAGAC-TGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGG-AGCTAA
1 CTTAGACATG-GAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCA-CTAA
* * *
25395836 GCCGATCGAAGAGGCATAATGCACAAGCCAGGAATCAACCCGGT-CCCCCTCTGCATGCTATCGA
64 GCCG-TCGAAGAGGCATAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTCTG--TGCTATCGA
* * * **
25395900 TCCCGCTGCCACAATCCTCAGTCTGGCTAGGG
126 TCCTGCTGCCACAACCCTCAGTCTGTCT-GAT
* * * * * * * * * *
25395932 CTTAGACGTGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCACTAAG-
* * * * ** * *
25395997 CGGTCGGAGAGGTAGAATGCGTAAGTCGGGGATCGACCCGGTCCCCCCTAC-GTGCTACCGATCC
65 CCGTCGAAGAGGCATAATGCACAAGCCGGGGATCGACCCGGTCCCCCCT-CTGTGCTATCGATCC
* * * * *
25396061 TACTGTCACAACCCTTCGGTCTGGGGC-AAT
129 TGCTGCCACAACCC-TCAGTCT--GTCTGAT
25396091 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
25396118 TTAGACTGGA
Statistics
Matches: 416, Mismatches: 68, Indels: 39
0.80 0.13 0.07
Matches are distributed among these distances:
157 13 0.03
158 114 0.27
159 274 0.66
160 11 0.03
161 4 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCACTAAGC
CGTCGAAGAGGCATAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTCTGTGCTATCGATCCTG
CTGCCACAACCCTCAGTCTGTCTGAT
Found at i:25396037 original size:318 final size:316
Alignment explanation
Indices: 25395456--25396117 Score: 701
Period size: 318 Copynumber: 2.1 Consensus size: 316
25395446 GCTCCGTATG
* * *
25395456 CTTAGACATGGAATGAACTCCGTATTCCTAAGCCAACCCGAGAAACGAGCGTACGAGCGCTCAAC
1 CTTAGAC-TGGAATGAACTCCGTATGCATAAGCCAACCCGAGAAACGAGCGTACGAGAGCTCAAC
* * * * ** * ** *
25395521 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATTGACTCGGTCCCCCCTGTGTGCTATCGATCCT
65 CGATCGAAGAGGCAGAATGCACAAGCCAGGAATCAACCCGGTCCCCCCTGCATGCTATCGATCCC
* * * *
25395586 GCTGCTACAACCCTCTATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
130 GCTGCCACAACCCTCTATCTGGTCTGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAAC
* *
25395651 CCACAAAACAAGCGTGCGGGCACTAAGCCAGCCGAATAGGCATAATGCACAAGCCGGGGATCGAC
195 CCACAAAACAAGCGTGCGGGCACTAAGCCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGAC
** * ** * *
25395716 CCGGTGCCCCCCT-CTGTGCTGTCGATCCTGCTGCCGTAACCC-TCAGTCT-AGTCTGAT
260 CCGGT-CCCCCCTAC-GTGCTACCGATCCTACTGCCACAACCCTTCAGTCTGAGGC-AAT
* *
25395773 CTTAGACTGAGAATGAACTCCGTATGCATAAGTCAACCC-ACGAAACGAGCGTACGGGAGCT-AA
1 CTTAGACTG-GAATGAACTCCGTATGCATAAGCCAACCCGA-GAAACGAGCGTACGAGAGCTCAA
*
25395836 GCCGATCGAAGAGGCATAATGCACAAGCCAGGAATCAACCCGGTCCCCCTCTGCATGCTATCGAT
64 -CCGATCGAAGAGGCAGAATGCACAAGCCAGGAATCAACCCGGTCCCCC-CTGCATGCTATCGAT
* * * *
25395901 CCCGCTGCCACAATCCTC-AGTCTGG-CTAGGGCTTAGAC-GTGGAATGAGCTCCCTATGCCTAA
127 CCCGCTGCCACAACCCTCTA-TCTGGTCT-GAGCTTAGACTG-GGAATGAACTCCCTATGCATAA
** ** * * * * * * * * ** *
25395963 GCCAACCCATGAAACGGGTGTGCGGGCGCTCAGTCGGTCGGAGAGGTAGAATGCGTAAGTCGGGG
189 GCCAACCCACAAAACAAGCGTGCGGGCACTAAGCCAGCCGAAGAGGCAGAATGCACAAGCCGGGG
* * *
25396028 ATCGACCCGGTCCCCCCTACGTGCTACCGATCCTACTGTCACAACCCTTCGGTCTGGGGCAAT
254 ATCGACCCGGTCCCCCCTACGTGCTACCGATCCTACTGCCACAACCCTTCAGTCTGAGGCAAT
25396091 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
25396118 TTAGACTGGA
Statistics
Matches: 283, Mismatches: 51, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
316 5 0.02
317 123 0.43
318 152 0.54
319 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (316 bp):
CTTAGACTGGAATGAACTCCGTATGCATAAGCCAACCCGAGAAACGAGCGTACGAGAGCTCAACC
GATCGAAGAGGCAGAATGCACAAGCCAGGAATCAACCCGGTCCCCCCTGCATGCTATCGATCCCG
CTGCCACAACCCTCTATCTGGTCTGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACC
CACAAAACAAGCGTGCGGGCACTAAGCCAGCCGAAGAGGCAGAATGCACAAGCCGGGGATCGACC
CGGTCCCCCCTACGTGCTACCGATCCTACTGCCACAACCCTTCAGTCTGAGGCAAT
Found at i:25396132 original size:26 final size:26
Alignment explanation
Indices: 25396091--25396143 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25396081 CTGGGGCAAT
25396091 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25396117 CTTAGACT-GGAGATGAACTTCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
25396143 C
1 C
25396144 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25397731 original size:26 final size:26
Alignment explanation
Indices: 25397680--25397732 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25397670 CTGGTTTGAT
* *
25397680 CTTAGACTGGGAGTGAACTTCGTATG
1 CTTAGACTGGGAGTGAACTCCATATG
25397706 CTTAGACTGGG-GATGAACTCCATATG
1 CTTAGACTGGGAG-TGAACTCCATATG
25397732 C
1 C
25397733 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAGTGAACTCCATATG
Found at i:25398090 original size:26 final size:26
Alignment explanation
Indices: 25398046--25398098 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25398036 TCCAGTTCAT
* *
25398046 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATAAACTCCATATG
* *
25398072 CTTAGACTGGGGATAAACTCCATATG
1 CTTAGACAGGGAATAAACTCCATATG
25398098 C
1 C
25398099 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATAAACTCCATATG
Found at i:25398697 original size:368 final size:366
Alignment explanation
Indices: 25397482--25398883 Score: 1542
Period size: 368 Copynumber: 3.8 Consensus size: 366
25397472 CCCTCTGCGT
* * * * *
25397482 GCTGCCAGTCCCGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAAT-AAGCTTCATA
1 GCTGCCGGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTA-CTCCATA
* * * ** * * * **
25397546 TGCCTATGCCAACCCACAGAATAGGTGTGCGGGCACTCAGTCGGTCGGAGAGCCAGAATGCAAAA
65 TGCCTAAGCCAACCCACAAAATAAGCATGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAA
* * ** * * * *
25397611 GTCGGGGATCGGCCCAATCCCTTCTGCGTGCTACCGATCCTACTGCCACAACCCTTGGT-CTGGT
130 GTCAGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTTGGTCCT-GT
* * *
25397675 TTGATCTTAGACTGGGAGTGAACTTCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTC
194 TTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCATATGCCTAAGTC
* * * * *
25397740 AACCCACGAAACGAGCGTGCGGGCACTTAGTCGGTCGGAGAGGCTGGTCGGAAAGGCATAATGCA
259 AACCCACGAAACGAGCGTGCGGGCGCTCAATCGGTCGGAGAGGCTGGTCGGAGAGGCATAATGCG
* * *
25397805 AAAGCCAGGGATCAGCCCAGTCCCCTTTTCCGTGCTGTCGATCCC
324 CAAG-CGGGGATCAGCCCAGTCCCC-TTTACGTGCTGTCGATCCC
* *
25397850 GCTGCCGGTCTTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCTATAT
1 GCTGCCGGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCATAT
** * * ** * * *
25397915 GCCTAAGCCAATGCACGAAATGAGCATGCGGGTGCTTAGCCAATC-GAGAGGCAGAATGTGCAAG
66 GCCTAAGCCAACCCACAAAATAAGCATGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAG
* ** * *
25397979 -CTAGGGATCGGCCCGGTCCCCCCTACGTATTGCCGATCCTACTGCCGCAACCCTTGGTCCAG-T
131 TC-AGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTTGGTCCTGTT
* *
25398042 TCATCTTAGACAGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCATATGCCTAAGTCA
195 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCATATGCCTAAGTCA
* * * ** **
25398107 ACCCAAGAAACGAGCGTGTGGGCGCTC-AGCGACCGGAGAGGCCAGTCGGAGAGGCATAATGCGC
260 ACCCACGAAACGAGCGTGCGGGCGCTCAATCGGTCGGAGAGGCTGGTCGGAGAGGCATAATGCGC
* **
25398171 AAGCTGGGGATCAACCCAGTCCCCCCTACGTGCTGTCGATCCC
325 AAGC-GGGGATCAGCCCAGTCCCCTTTACGTGCTGTCGATCCC
* * * * * * * ** *
25398214 GTTGTCGATCTTGCTACCACAACCCTCGATCCGGCTAGGGCTTAGATGTGGAATGTACTCCGTAT
1 GCTGCCGGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCATAT
* * ** * ** * * * *
25398279 ACCTAAGCCAACCCACGAAACGAGCTTATGGGCGCTCAACCGACCGGAGAGGTAGAATGCGCAAG
66 GCCTAAGCCAACCCACAAAATAAGCATGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAG
* * * *
25398344 TCAGGGATCGGCCCGATCCCCCCTGCGTGTTGTCGATCCTGCTACCGCAACCCTTGGTCCTGTTT
131 TCAGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTTGGTCCTGTTT
* * * * *
25398409 GATCTTAGACTGGGAATGAACTCCGTATGCTTCGACTGGGGATGAAGTCCGTATGGCTAAGTCAA
196 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCATATGCCTAAGTCAA
* *
25398474 CCCACGAAACGATG-GTGCGGACGCTCAATCGGTCGGTGAGGCTGGTCGGAGAGGCATAATGCGC
261 CCCACGAAACGA-GCGTGCGGGCGCTCAATCGGTCGGAGAGGCTGGTCGGAGAGGCATAATGCGC
* * * * *
25398538 AAGTCGGGGATCAGCTCGGTCCTCCTTTACATGCTGCCGATCCT
325 AAG-CGGGGATCAGCCCAGTCC-CCTTTACGTGCTGTCGATCCC
* * * * *
25398582 GCTACCGGTCCTGCTGCCACAACCCTCGGT-CTGCTTGGGGCTTAGACGTGGAATGTACTCCGTA
1 GCTGCCGGTCCTGCTACCACAACCCTCGGTCCAGC-TGGGGCTTAGACATGGAATGTACTCCATA
* * *
25398646 TGCCTAAGCCAACCCACAAAATAAGCATGCGGGCACTTAGTCGATCGGAGAGGCAGAATGCGTAA
65 TGCCTAAGCCAACCCACAAAATAAGCATGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAA
* * ** * * * * * *
25398711 GTCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTTGATCCTGCTATCGCAACCCTCGATCCGGTC
130 GTCAGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTTGGTCCTGTT
**
25398776 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCTTTATGCCTAAGTCA
195 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCATATGCCTAAGTCA
* * * * *
25398841 ACCCACAAAATGAGCGTGCGGGCGCTCAACCAGCCGGAGAGGC
260 ACCCACGAAACGAGCGTGCGGGCGCTCAATCGGTCGGAGAGGC
25398884 AAAATGCACA
Statistics
Matches: 859, Mismatches: 162, Indels: 26
0.82 0.15 0.02
Matches are distributed among these distances:
364 105 0.12
365 118 0.14
366 167 0.19
367 115 0.13
368 353 0.41
369 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (366 bp):
GCTGCCGGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCATAT
GCCTAAGCCAACCCACAAAATAAGCATGCGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAG
TCAGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTACTACCGCAACCCTTGGTCCTGTTT
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCATATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAATCGGTCGGAGAGGCTGGTCGGAGAGGCATAATGCGCA
AGCGGGGATCAGCCCAGTCCCCTTTACGTGCTGTCGATCCC
Found at i:25398976 original size:183 final size:184
Alignment explanation
Indices: 25398644--25398989 Score: 462
Period size: 183 Copynumber: 1.9 Consensus size: 184
25398634 ATGTACTCCG
* ** * * **
25398644 TATGCCTAAGCCAACCCACAAAATAAGCATGCGGGCACTTAGTCGATCGGAGAGGCAGAATGCGT
1 TATGCCTAAGCCAACCCACAAAATAAGCATGCGGGCACTCAACCGACCGGAGAGGCAAAATGCAC
* * * * **
25398709 AAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTTGATCCTGCTATCGCAACCCTCGATCCGG
66 AAGACGGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCCTGCTATCGCAACCCTCGATCCAA
25398774 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCTT
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCTT
* * * *
25398828 TATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAACC-AGCCGGAGAGGCAAAATGCA
1 TATGCCTAAGCCAACCCACAAAATAAGCATGCGGGCACTCAACCGA-CCGGAGAGGCAAAATGCA
* * * * *
25398892 CAA-ACGGGGATCGACCTGGTCCCCCCTGCATGCTGTCGATCTTGCTATCGCAACCCTTGGTCCA
65 CAAGACGGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCCTGCTATCGCAACCCTCGATCCA
*
25398956 ATCTGATCTTAGATTGGGAATGAACTCCGTATGC
130 ATCTGATCTTAGACTGGGAATGAACTCCGTATGC
25398990 ATAAGTCAAC
Statistics
Matches: 138, Mismatches: 23, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
183 84 0.61
184 54 0.39
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (184 bp):
TATGCCTAAGCCAACCCACAAAATAAGCATGCGGGCACTCAACCGACCGGAGAGGCAAAATGCAC
AAGACGGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCCTGCTATCGCAACCCTCGATCCAA
TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCTT
Found at i:25399293 original size:156 final size:158
Alignment explanation
Indices: 25398806--25399298 Score: 422
Period size: 157 Copynumber: 3.1 Consensus size: 158
25398796 ACTCCGTATG
* * ** * * * * * * *
25398806 CTTAGACTGGGGATAAACTCTTTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGC
* * * * *
25398871 C-AGCCGGAGAGGCAAAATGCACAA-ACGGGGATCGACCTGGTCCCCCCTGCATGCTGTCGATCT
66 CGA-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTGCATGCTGTCGATCC
* * * *
25398934 TGCTATCGCAACCCTTGGTCCAATCTGAT
130 TGCTGTCGCAACCCTCGGTCCGATTTGAT
* * * * * *
25398963 CTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGTGAGCACTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGC
* * * * * *
25399028 CGACCGAAGAGGCATAATGTGCAAGCTGAGGATCGACCCGGTCCCCCTCTGCATGCTGTCGGTCC
66 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCC-CTGCATGCTGTCGATCC
* * ** * **
25399093 CGCTGCCATAACCCTCGGTCCGATTGGGG
130 TGCTGTCGCAACCCTCGGTCCGATTTGAT
* * * * * * **
25399122 CTTAGACAT-GCAATGAGCTCCCTATGCCTAAGCCAACGCACG-AACGGGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAG
* * * **
25399185 CCGATCGGAGA-GCAGAATGCGCAAGCCGGGGATC-AGCCTGGTCCCCCCTGCGTGCTACCGATC
65 CCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCTGGTCCCCCCTGCATGCTGTCGATC
* *
25399248 CTGCTGTCGCAACCCTCAGTCCGGTTTGAT
129 CTGCTGTCGCAACCCTCGGTCCGATTTGAT
25399278 CTTAGACTGGGAATGAACTCC
1 CTTAGACTGGGAATGAACTCC
25399299 GTACGCTTAG
Statistics
Matches: 259, Mismatches: 71, Indels: 13
0.76 0.21 0.04
Matches are distributed among these distances:
155 1 0.00
156 51 0.20
157 98 0.38
158 43 0.17
159 65 0.25
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCCCTGCATGCTGTCGATCCT
GCTGTCGCAACCCTCGGTCCGATTTGAT
Found at i:25399307 original size:26 final size:26
Alignment explanation
Indices: 25399278--25399327 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
25399268 CCGGTTTGAT
25399278 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
* *
25399304 CTTAGATTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
25399328 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:25399348 original size:17 final size:17
Alignment explanation
Indices: 25399326--25399359 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
25399316 ATGAACTCCG
25399326 TATGCCTAAGTCAACCC
1 TATGCCTAAGTCAACCC
25399343 TATGCCTAAGTCAACCC
1 TATGCCTAAGTCAACCC
25399360 ACAAAACGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.35, G:0.12, T:0.24
Consensus pattern (17 bp):
TATGCCTAAGTCAACCC
Found at i:25400031 original size:367 final size:367
Alignment explanation
Indices: 25399343--25400121 Score: 886
Period size: 367 Copynumber: 2.1 Consensus size: 367
25399333 AAGTCAACCC
* * * * * * * *
25399343 TATGCCTAAGTCAACCCACAAAACGAGCGTACGAGTACTCAACCGGTCGAAGAGGCCATTCGGAG
1 TATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGGCGAAGAGGCCACTCGAAA
* ** *
25399408 AGGCATAATGCGTAAGCCGAGGATCAATTCGATCCCCATCTGCGTGCTATCGATCCCGCTACCGA
66 AGGCATAATGCGCAAGCCGAGGATCAACCCGATCCCCATCTGCGTGCTATCGATCCCCCTACCGA
* * *
25399473 TCTTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGCGTGGAATGTACTCTGTATGCCTAAGCC
131 TCTTGCTGCCACAAACCTCGATCCAGCTGGGGCTTAGCATGGAATGTACTCTGTATGCCTAAGCC
** * * * * * ** ** *
25399538 AACCCAGGAAATGAGCGTATGGGCGTTCAATCGACCAGAGAGGCAGAATGCGTAAGTCGGGGATC
196 AACCCACAAAATGAACGTACGGGCGCTCAACCGACCAGAGAGGCAGAATACACAAACCGAGGATC
** * * * * *
25399603 GGTTCGATCCCCCCTACATGCTGCCAAACCTGCTGCCGCAACCCTTGATCCAGTTTGATCTTACA
261 GCCTCGATCCCACCTACATGCTACCAAACCTGCTACCGCAACCCTCGATCCAGTCTGATCTTACA
* *
25399668 TTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCG
326 CTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCG
* * *
25399710 TATGCCTAAGTCAACCCACAAAACGAGCGTGGGGGTGCTCAGTCGGGCGGAGAGGCCAGCT-GAA
1 TATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGGCGAAGAGGCCA-CTCGAA
* * * * *
25399774 AAGGCATAATGCGCAAGTCGGGGATCAGCCC-AGTCCCCCTCTGCGTGCTGTCGATCCCCCTACC
65 AAGGCATAATGCGCAAGCCGAGGATCAACCCGA-TCCCCATCTGCGTGCTATCGATCCCCCTACC
* *
25399838 GGTCTTGCT-CCTATAAACCTCGATCC-GACTGGGGCTTAGACATGGAATGTACTCTGTATGCCT
129 GATCTTGCTGCC-ACAAACCTCGATCCAG-CTGGGGCTTAG-CATGGAATGTACTCTGTATGCCT
* * * *
25399901 AAGCCAACCCACAAAATGAACGTACGGGTGCTCAGCCGACCGGAGAGGTAGAATACACAAACCGA
191 AAGCCAACCCACAAAATGAACGTACGGGCGCTCAACCGACCAGAGAGGCAGAATACACAAACCGA
* ** * * * *
25399966 GGATCGACCT-GGT-CCACCTATGTGCTACCGATCCTGCTATCGCAACCCTCGATCCGGTCTGAT
256 GGATCG-CCTCGATCCCACCTACATGCTACCAAACCTGCTACCGCAACCCTCGATCCAGTCTGAT
* * *
25400029 CTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCCG
320 CTTACACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCG
** * *
25400077 TATGCCTAAGTCAACCCAGGAAACGAGTGTGCGGGCGCTCAGCCG
1 TATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCG
25400122 ACCAGAGGGG
Statistics
Matches: 340, Mismatches: 66, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
366 4 0.01
367 255 0.75
368 80 0.24
369 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (367 bp):
TATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGGCGAAGAGGCCACTCGAAA
AGGCATAATGCGCAAGCCGAGGATCAACCCGATCCCCATCTGCGTGCTATCGATCCCCCTACCGA
TCTTGCTGCCACAAACCTCGATCCAGCTGGGGCTTAGCATGGAATGTACTCTGTATGCCTAAGCC
AACCCACAAAATGAACGTACGGGCGCTCAACCGACCAGAGAGGCAGAATACACAAACCGAGGATC
GCCTCGATCCCACCTACATGCTACCAAACCTGCTACCGCAACCCTCGATCCAGTCTGATCTTACA
CTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCG
Found at i:25400058 original size:26 final size:26
Alignment explanation
Indices: 25400029--25400081 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25400019 CCGGTCTGAT
25400029 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25400055 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25400081 C
1 C
25400082 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25401079 original size:159 final size:160
Alignment explanation
Indices: 25400787--25401281 Score: 484
Period size: 159 Copynumber: 3.1 Consensus size: 160
25400777 GCTTCGACAT
* * * * * * * * **
25400787 GGAATGAACTCCATATGCCTAAGCCAACCC-TGAAAACAAGTGTACGGGCGCTCAGCCGGCTAG-
1 GGAATGAACTCCGTATGCATAAGCCAACCCACG-AAACGAGCGTGCGGGCACTCAACCGGCCGGA
* * * * ** *
25400850 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCCTACGTGTTGTTGATCCTACTACC
65 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATCCTACTGCC
*
25400915 GCAACCCTTGGTCTGGTCTGATCTTAGACTA
130 GCAACCCTCGGTCTGGTCTGATCTTAGACTA
* * * * * *
25400946 GGAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAACCGGTC-GAA
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCGGAA
* * * * * *
25401010 GAGGCATAATGCCCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGGTCCCACTGCCA
66 GAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATCCTACTGCCG
*
25401075 CAACCCTCAGTCTGG-CTAGGA-CTTAGAC-A
131 CAACCCTCGGTCTGGTCT--GATCTTAGACTA
* * * *
25401104 TGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAACCGGCCGGA
1 -GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCGGA
* * * * * *
25401169 A-AGGCAGAATGCGCAAGTCGGGGATCGGCCCCGATCCCTCT-TGCGTGCTACCGATCCTGCTGT
65 AGAGGCAGAATGCGCAAGCCGGGGATC-GACCCGATCCCCCTCTGCGTGCTGCCGATCCTACTGC
* * * *
25401232 CGCAACCCTCGATCCGATCTGATCTTAGACTG
129 CGCAACCCTCGGTCTGGTCTGATCTTAGACTA
25401264 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
25401282 TTAGAATGGG
Statistics
Matches: 269, Mismatches: 57, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
158 6 0.02
159 243 0.90
160 20 0.07
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (160 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCGGAA
GAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATCCTACTGCCG
CAACCCTCGGTCTGGTCTGATCTTAGACTA
Found at i:25401284 original size:26 final size:26
Alignment explanation
Indices: 25401255--25401307 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25401245 CCGATCTGAT
*
25401255 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
25401281 CTTAGAATGGGGATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
25401307 C
1 C
25401308 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:25401660 original size:26 final size:26
Alignment explanation
Indices: 25401624--25401676 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25401614 CTGGTCTGAT
25401624 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25401650 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25401676 C
1 C
25401677 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25401834 original size:50 final size:50
Alignment explanation
Indices: 25401759--25401860 Score: 150
Period size: 50 Copynumber: 2.0 Consensus size: 50
25401749 AAATGGGTGG
* ** *
25401759 TAGGTGGGTTCAAGTGCATCTTTATATTTCTATCATGACAATGCCATTTT
1 TAGGTGGGCTCAAGCACATCTTTATATTTCTACCATGACAATGCCATTTT
* *
25401809 TAGGTGGGCTCAAGCACATCTTTATATTTCTCCCATGCCAATGCCATTTT
1 TAGGTGGGCTCAAGCACATCTTTATATTTCTACCATGACAATGCCATTTT
25401859 TA
1 TA
25401861 TGGCTTCTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.39
Consensus pattern (50 bp):
TAGGTGGGCTCAAGCACATCTTTATATTTCTACCATGACAATGCCATTTT
Found at i:25402776 original size:158 final size:158
Alignment explanation
Indices: 25402404--25403060 Score: 558
Period size: 159 Copynumber: 4.1 Consensus size: 158
25402394 GTGGCTCAAA
* * * ** *
25402404 ATCTTAGATTGGGAATGAGCTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCA
1 ATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCGCTCA
* * * * * * ** * * * * * * *
25402469 GCCGGCTGGAGAGGCATAATGCGCAAGTAGAGGATCGACCCGATCTGCCTCTGCATGCTGTCGGT
66 GTCGACCGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGGTC-CCCCCTGCGTGCTGTCGAT
* * *
25402534 CCTGCTGCCA-CTACCCTCGGTCTGG-CTGG
130 CCTGCT-ACAGCAACCCTCGGTCCGGTCT-G
** *
25402563 GGCTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGG-GCGTGCGGGCGCT
1 ATCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GGAGCGTGCGGGCGCT
* * * *
25402626 CAGTCGACCGAAAAGGCAGAATGCACAAACCGGGGATCGGCCTGGTCCCCCCTGCGTGCTG-CTG
64 CAGTCGACCGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTC-G
25402690 ATCCTGCTACAGCAACCCTCGGTCCGGTCTG
128 ATCCTGCTACAGCAACCCTCGGTCCGGTCTG
* * * * * * * **
25402721 ATCTTACACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAAGGAACGTGCGGGCACAGA
1 ATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCGCTCA
* * * ** * ** * * ** *
25402786 G-CCAGCCGAAGAGGCATAATGCGCAAGTAGAGGATCAACCCGATCCGCCTCTGTATGCTGTCGG
66 GTCGA-CCGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGGTCC-CCCCTGCGTGCTGTCGA
* * *
25402850 TCCTGCTGCCA-CTACCCTCGATCCGG-CTGG
129 TCCTGCT-ACAGCAACCCTCGGTCCGGTCT-G
** * * * *
25402880 GGCTTAGACAT-GGAATGAGCACCCTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTC
1 ATCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCGCTC
*
25402944 AATCGACCGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGAT
65 AGTCGACCGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGAT
* *
25403009 CCTGCTACCGTAACCCTCGGTCCGGTCTG
130 CCTGCTACAGCAACCCTCGGTCCGGTCTG
*
25403038 ATCTTAGACTGCGAATGAACTCC
1 ATCTTAGACTGGGAATGAACTCC
25403061 GTATACTTAA
Statistics
Matches: 383, Mismatches: 98, Indels: 35
0.74 0.19 0.07
Matches are distributed among these distances:
157 10 0.03
158 163 0.43
159 203 0.53
160 7 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
ATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCGCTCA
GTCGACCGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
CTGCTACAGCAACCCTCGGTCCGGTCTG
Found at i:25402992 original size:317 final size:317
Alignment explanation
Indices: 25402404--25403064 Score: 1020
Period size: 317 Copynumber: 2.1 Consensus size: 317
25402394 GTGGCTCAAA
* * * * *
25402404 ATCTTAGATTGGGAATGAGCTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGAGCACACA
* * * * *
25402469 GCCGGCTGGAGAGGCATAATGCGCAAGTAGAGGATCGACCCGATCTGCCTCTGCATGCTGTCGGT
66 GCCAGCCGAAGAGGCATAATGCGCAAGTAGAGGATCAACCCGATCCGCCTCTGCATGCTGTCGGT
* * *
25402534 CCTGCTGCCACTACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCC
131 CCTGCTGCCACTACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAGCACCCTATGCCTAAGCC
* * * *
25402599 AACCCACGAAATGGGCGTGCGGGCGCTCAGTCGACCGAAAAGGCAGAATGCACAAACCGGGGATC
196 AACCCACGAAATGAGCATGCGGGCGCTCAATCGACCGAAAAGGCAAAATGCACAAACCGGGGATC
*
25402664 GGCCTGGTCCCCCCTGCGTGCTG-CTGATCCTGCTACAGCAACCCTCGGTCCGGTCTG
261 GGCCCGGTCCCCCCTGCGTGCTGTC-GATCCTGCTACAGCAACCCTCGGTCCGGTCTG
* * * * * *
25402721 ATCTTACACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAAGGAA-CGTGCGGGCACAG
1 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAA-CAAGCGTGCGAGCACAC
*
25402785 AGCCAGCCGAAGAGGCATAATGCGCAAGTAGAGGATCAACCCGATCCGCCTCTGTATGCTGTCGG
65 AGCCAGCCGAAGAGGCATAATGCGCAAGTAGAGGATCAACCCGATCCGCCTCTGCATGCTGTCGG
25402850 TCCTGCTGCCACTACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAGCACCCTATGCCTAAGC
130 TCCTGCTGCCACTACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAGCACCCTATGCCTAAGC
* *
25402915 CAACCCACGAAATGAGCATGCGGGCGCTCAATCGACCGAAGAGGCAAAATGCACAAGCCGGGGAT
195 CAACCCACGAAATGAGCATGCGGGCGCTCAATCGACCGAAAAGGCAAAATGCACAAACCGGGGAT
* *
25402980 CGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCCGGTCTG
260 CGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACAGCAACCCTCGGTCCGGTCTG
*
25403038 ATCTTAGACTGCGAATGAACTCCGTAT
1 ATCTTAGACTGGGAATGAACTCCGTAT
25403065 ACTTAAACTA
Statistics
Matches: 311, Mismatches: 31, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
317 308 0.99
318 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (317 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGAGCACACA
GCCAGCCGAAGAGGCATAATGCGCAAGTAGAGGATCAACCCGATCCGCCTCTGCATGCTGTCGGT
CCTGCTGCCACTACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAGCACCCTATGCCTAAGCC
AACCCACGAAATGAGCATGCGGGCGCTCAATCGACCGAAAAGGCAAAATGCACAAACCGGGGATC
GGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACAGCAACCCTCGGTCCGGTCTG
Found at i:25403682 original size:367 final size:364
Alignment explanation
Indices: 25402849--25403876 Score: 1138
Period size: 368 Copynumber: 2.8 Consensus size: 364
25402839 TATGCTGTCG
* * * * * *
25402849 GTCCTGCTGCCACTACCCTCGATCCGGCTGGGGCTTAGACATGGAATG-AGCACCCTATGCCTAA
1 GTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAA
* * * * *
25402913 GCCAACCCACGAAATGAGCATGCGGGCGCTCAATCGACCGAAGAGGCAAAATGCACAAGCCGGGG
65 GCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGACCGAAGAGGCAAAATGCACAAGCC-AGG
* * * * * * *
25402978 ATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCCGGTCTGATCTT
129 ATCGGCCCGATCCCCCTTACGTGCTCT-GATCCTGCTGCCGTAACCCTCGATTCGGTCTGATCTT
* * *
25403043 AGAC-TGCGAATGAACTCCGTATACTTAAACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAC
193 AGACTTG-GAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * *
25403107 AAAATGAGTGCGTG-GGTGCTCAACCGACCGGAGAGGTCGGTTGGAGAGGTATAATGCACAAGCC
257 GAAATGA--GCGTGCGGCGCTCAACCGACCAGAGAGGTCGGCTAGAGAGGCATAATG-ACAAGCC
* * * ** * *
25403171 GGGGATCAACCCGGTCGCCCTCTGTGTGCTATCGATCCTGCTGCCA
319 GGGGATCAACACAGTCCCCCTCTACGTACTACCGATCCTGCTGCCA
* * * *
25403217 GTCCTACTGCCATAACCCTCGGTAC-AGCTGGGGCTTAGACGTGGAATGTACTCCGTATTCCTAA
1 GTCCTGCTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAA
* * * * *
25403281 GCCAACCCATGAAACGAGTGTGCGGGCACTCAACCGATCGAAAAGGCAAAACGCACAAGCCATGG
65 GCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGACCGAAGAGGCAAAATGCACAAGCCA-GG
* *
25403346 ATCGGCCCAATCCCCCTTACGTGCTACTGATCCTACTGCCGTAACCCTCGATTCGGT-TCGATCT
129 ATCGGCCCGATCCCCCTTACGTGCT-CTGATCCTGCTGCCGTAACCCTCGATTCGGTCT-GATCT
* *
25403410 TAG-CTTTGGAATGAACTCCATATGCTTAGACTGGGGATGAATTCCGTATGCCTAAGTCAACCCA
192 TAGAC-TTGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCA
** * * *
25403474 CGAAATGAGCGTGCAGGCGCTCAGTCGGCCAGAGAGG-CTGGCTAGAGTGGCATAAT-AGCAAGT
256 CGAAATGAGCGTGC-GGCGCTCAACCGACCAGAGAGGTC-GGCTAGAGAGGCATAATGA-CAAGC
* * *
25403537 CGGGGATCAGCACAGTCCCCCTCTACGTACTGCCGATCTTGCTGCCA
318 CGGGGATCAACACAGTCCCCCTCTACGTACTACCGATCCTGCTGCCA
* *
25403584 GTCCTGCTGGCACAACCCTCGGTCCGATTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAG
1 GTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAG
* * * *
25403649 CCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGC-TAAGCCGAGGA
66 CCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGACCGAAGAGGCAAAATGCACAAGCC-AGGA
* * * * * * * *
25403713 TCGACCCGATCCCCCTTACGTGTTGCCGATCTTGCTGTCGCAACCCTCGATCCGATCTGATCTTA
130 TCGGCCCGATCCCCCTTACGTGCT-CTGATCCTGCTGCCGTAACCCTCGATTCGGTCTGATCTTA
* * *
25403778 GACTAGGAATGAACTCCATATGCTTAGATTAGGGATGAACTCCATATGCCTAAGTCAACCCACGA
194 GACTTGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
** * * *
25403843 AACAAGCGTACGGGCGCTCAACTGACCAAAGAGG
259 AATGAGCGTGC-GGCGCTCAACCGACCAGAGAGG
25403877 CACAAGTCGG
Statistics
Matches: 550, Mismatches: 95, Indels: 32
0.81 0.14 0.05
Matches are distributed among these distances:
366 149 0.27
367 149 0.27
368 248 0.45
369 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (364 bp):
GTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAG
CCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGACCGAAGAGGCAAAATGCACAAGCCAGGAT
CGGCCCGATCCCCCTTACGTGCTCTGATCCTGCTGCCGTAACCCTCGATTCGGTCTGATCTTAGA
CTTGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
TGAGCGTGCGGCGCTCAACCGACCAGAGAGGTCGGCTAGAGAGGCATAATGACAAGCCGGGGATC
AACACAGTCCCCCTCTACGTACTACCGATCCTGCTGCCA
Found at i:25403810 original size:26 final size:26
Alignment explanation
Indices: 25403774--25403826 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25403764 CCGATCTGAT
25403774 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
25403800 CTTAGATTAGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
25403826 C
1 C
25403827 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:25404517 original size:26 final size:26
Alignment explanation
Indices: 25404488--25404540 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25404478 GGCTCAAAAT
*
25404488 CTTAGAC-TGGGAATGAGCTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
25404514 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
25404540 C
1 C
25404541 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:25404908 original size:159 final size:158
Alignment explanation
Indices: 25404513--25404931 Score: 434
Period size: 159 Copynumber: 2.6 Consensus size: 158
25404503 AGCTCCATAT
*
25404513 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *** * *
25404578 CCGGTTGGAGAGGCT-TAATGCGCAAGTCAGGGATCAACCCGGTCCCCCCCTGTGTACTGTCGAT
66 CC-GTCGGAGAGG-TATAATGCGCAAGTCGGGGATCAACCCGGTCCCCCCCTACATACTGCCGAC
* * * *
25404642 CCTGCTACCATAACCCTCGGTCTACTCCGA
129 CCCGCTACCACAACCCTCGGTCGACTCAGA
* * * * *
25404672 TCTTAGA-ATGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
25404736 GCCGACCGAAGAGGTATAGTGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTACATGCTGCC-AG
65 GCCG-TCGGAGAGGTATAATGCGCAAGTCGGGGATCAACCCGGTCCCCCCCTACATACTGCCGA-
* * *
25404800 CCCCGCTACCACAACCCTGGGTCCGGCT-AGG
128 CCCCGCTACCACAACCCTCGGT-CGACTCAGA
* * *
25404831 GCTTAGACATGGAATGAGCTCCTTATGCCTAAGCCAACCCACGAAAC-AGGCGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* * * *
25404895 ACCAGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCA
65 GCC-GTCGGAGAGGTATAATGCGCAAGTCGGGGATCA
25404932 GCTCGGTACC
Statistics
Matches: 210, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
158 6 0.03
159 198 0.94
160 6 0.03
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGTCGGAGAGGTATAATGCGCAAGTCGGGGATCAACCCGGTCCCCCCCTACATACTGCCGACCC
CGCTACCACAACCCTCGGTCGACTCAGA
Found at i:25406232 original size:26 final size:26
Alignment explanation
Indices: 25406203--25406255 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25406193 CCTGTCCGAT
*
25406203 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
25406229 CTTAGACAGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
25406255 C
1 C
25406256 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:25406327 original size:171 final size:170
Alignment explanation
Indices: 25406031--25406362 Score: 423
Period size: 171 Copynumber: 1.9 Consensus size: 170
25406021 GTGGCTCAAA
* * * * *
25406031 ATCTTAGATTGGGAATGAGCTTCGTATACTTAGACATGGAATGAGCTCCCATGCCTAAGCCAACC
1 ATCTTAGACTGGGAATGAACTCCGTATACTTAGACAGGGAATGAACTCCCATGCCTAAGCCAACC
* * * * **
25406096 CACGAAACGGACGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGTAAGCAGGGGATCGGCC
66 AACGAAACGGACGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAACGCGCAAGCAGGGGATCAACC
* *
25406161 TGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCCTGTCCG
131 CGGTCCCCCCTGCGTACTGTCGATCCTGCTATCCTGTCCG
* * * *
25406201 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATACTTAGACAGGGAATGAACTCC-CATGCCTAAGCCAAC
* *** * *
25406266 CAACGAAAC-GAGCGTGCGGGTGCTCAGCCGGTTGGAGAGGCATAACGCGCAAGCTGGGGATCAA
65 CAACGAAACGGA-CGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAACGCGCAAGCAGGGGATCAA
*
25406330 CCCGGTCCCCCCTGCGTACTGTCGATCTTGCTA
129 CCCGGTCCCCCCTGCGTACTGTCGATCCTGCTA
25406363 CTGCAACCCT
Statistics
Matches: 136, Mismatches: 24, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
170 44 0.32
171 92 0.68
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.20
Consensus pattern (170 bp):
ATCTTAGACTGGGAATGAACTCCGTATACTTAGACAGGGAATGAACTCCCATGCCTAAGCCAACC
AACGAAACGGACGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAACGCGCAAGCAGGGGATCAACC
CGGTCCCCCCTGCGTACTGTCGATCCTGCTATCCTGTCCG
Found at i:25406740 original size:26 final size:26
Alignment explanation
Indices: 25406704--25406756 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25406694 CCGATCTGAT
*
25406704 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGAGTGGGAATGAACTTCGTATG
*
25406730 CTTAGAGTGGGGATGAACTTCGTATG
1 CTTAGAGTGGGAATGAACTTCGTATG
25406756 C
1 C
25406757 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32
Consensus pattern (26 bp):
CTTAGAGTGGGAATGAACTTCGTATG
Found at i:25407594 original size:11 final size:11
Alignment explanation
Indices: 25407578--25407610 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
25407568 GGGTTAGGCT
25407578 CTCCGACGATG
1 CTCCGACGATG
25407589 CTCCGACGATG
1 CTCCGACGATG
25407600 CTCCGACGATG
1 CTCCGACGATG
25407611 GTGTCTGGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:25408876 original size:26 final size:26
Alignment explanation
Indices: 25408840--25408892 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25408830 CCGGTCCAAT
*
25408840 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25408866 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25408892 C
1 C
25408893 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25409194 original size:368 final size:368
Alignment explanation
Indices: 25408498--25409295 Score: 956
Period size: 368 Copynumber: 2.2 Consensus size: 368
25408488 CTGGTCTGAT
* * **
25408498 CTTAGAATGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAAC
1 CTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTCAAC
* * * * *
25408563 AGGCCAAAAAGGCCGGTCGGAGAGGCATAATGCGCAAGTCAAGGATCAGCCTGCTCCCCCTCTAC
66 AGACCAAAAAGCCCGATCAGAGAGGCATAATACGCAAGTCAAGGATCAGCCTGCTCCCCCTCTAC
* * * *
25408628 GTGCTACCGATCCCGCTGCCGGTCCTGCTTCCACAACCCTCGGTCCGACTGGGGTTTAGACGTGG
131 ATGCTACCGATCCCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACGTGG
* * * * * *
25408693 AATGTACTTCATATGCCTAAAACAACCCACAAAATGAGTGTGCAGGCGCTCAGTCAACCGGAGAG
196 AATGTACTCCATATACCTAAAACAACCCACAAAATAAGCGTGCAGGAGCTCAGCCAACCGGAGAG
* * * * **
25408758 GCAGAATGCACAAGCCGGGGATCGACCCGATCCCCTCTGCGTGCTACCAATCCTGCTGTCGCAAC
261 ACAGAATGCACAAGCCGGGGATCGACCCGATCCCCTCTACATGCTACCAATCCTACTACCGCAAC
25408823 CCTCGATCCGGTCCAATCTTAGACTGGGAATGAACT-TCGTATG
326 CCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCT-GTATG
* * * *
25408866 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAAGTGCTCAGC
1 CTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTCA-A
* ** * * * * * *
25408931 CA-ATCGGAGAGCCCGATCAGAGATGCATAATACGTAAGTCGAGGATCAGCCTGGTCCCCCTCTG
65 CAGACCAAAAAGCCCGATCAGAGAGGCATAATACGCAAGTCAAGGATCAGCCTGCTCCCCCTCTA
** * * *
25408995 CATGCTGTCGATCTCC-CTGCCGGTCTTGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGATGT
130 CATGCTACCGATC-CCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACGT
** * * *
25409059 GGAATGTACTCCATATACCTAAGCCAACCCACGAAATAAGCGTGCAGGAGCTTAGCCAATCGGAG
194 GGAATGTACTCCATATACCTAAAACAACCCACAAAATAAGCGTGCAGGAGCTCAGCCAACCGGAG
** * * ** * *
25409124 AGACAGAATGCGTAAGTCGGGGATCGACTCGATCCCCTCTACATGCTGTCGATCCTACTACCGTA
259 AGACAGAATGCACAAGCCGGGGATCGACCCGATCCCCTCTACATGCTACCAATCCTACTACCGCA
** *
25409189 ACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAACTCTGTATG
324 ACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATG
* * * * **
25409234 CTTAGACTGGGGATGAACTCC-TATGCCTATGTCAACCTACAAAACGAGCGTGCGGGCGCTCA
1 CTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTCA
25409296 GCCGACCAGA
Statistics
Matches: 360, Mismatches: 67, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
367 34 0.09
368 321 0.89
369 5 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (368 bp):
CTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTCAAC
AGACCAAAAAGCCCGATCAGAGAGGCATAATACGCAAGTCAAGGATCAGCCTGCTCCCCCTCTAC
ATGCTACCGATCCCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACGTGG
AATGTACTCCATATACCTAAAACAACCCACAAAATAAGCGTGCAGGAGCTCAGCCAACCGGAGAG
ACAGAATGCACAAGCCGGGGATCGACCCGATCCCCTCTACATGCTACCAATCCTACTACCGCAAC
CCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATG
Found at i:25410315 original size:160 final size:157
Alignment explanation
Indices: 25409956--25410364 Score: 351
Period size: 160 Copynumber: 2.6 Consensus size: 157
25409946 ATCTCCGTAT
** * *
25409956 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAATGATCGTGCGGGTGCCCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGTGCCCAG
* * * ** *
25410021 CCGGTCGGAGTGGCAGAATGTGCAAGCTTGAGATCGACCCGATCCCCCCTACGTGCTATCGATCC
65 CCGGCCGAAGAGGCAGAATGCACAAGCTCGAGATCGACCCGATCCCCCCTACGTGCTATCGATCC
* * * * *
25410086 TGCTACTACAACTCTCGGTTCGGTCCGA
130 CGCTACCACAACCCTCGGTCCGGTCAGA
* * * *
25410114 TCTTAGAC-TGGGAATGAACTCCAC-ATGCATAAGTCAACCCACGAAACGAGCGTGTGGGGTGCT
1 GCTTAGACAT-GGAATGAACTCC-CTATGCCTAAG-CAACCCACGAAACGAGCGTG-CGGGTGCC
* * * * *
25410177 GA-CCAGGCCGAAGAGGCATAATGCACAAGC-CGGGCATCGGCCCGATCCCCCTCTACGTGCTGT
62 CAGCC-GGCCGAAGAGGCAGAATGCACAAGCTCGAG-ATCGACCCGATCCCCC-CTACGTGCTAT
* * *
25410240 CGGTCCCGCTGCCACAACCCTCGGTCCGG-CTAGG
124 CGATCCCGCTACCACAACCCTCGGTCCGGTC-AGA
* * * * * ** *
25410274 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCGAACCCACGAAATGGGCATGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGTGCCCAG
** *
25410339 CCGATCGAAGAGGCAGAATGCGCAAG
65 CCGGCCGAAGAGGCAGAATGCACAAG
25410365 TCGGGGATCA
Statistics
Matches: 198, Mismatches: 41, Indels: 23
0.76 0.16 0.09
Matches are distributed among these distances:
157 1 0.01
158 47 0.24
159 71 0.36
160 78 0.39
161 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGTGCCCAGC
CGGCCGAAGAGGCAGAATGCACAAGCTCGAGATCGACCCGATCCCCCCTACGTGCTATCGATCCC
GCTACCACAACCCTCGGTCCGGTCAGA
Found at i:25410484 original size:26 final size:26
Alignment explanation
Indices: 25410433--25410485 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25410423 CTGGTTTGAT
* *
25410433 CTTAGACTGAGAATTAACTTCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
25410459 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
25410485 C
1 C
25410486 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:25410830 original size:26 final size:26
Alignment explanation
Indices: 25410801--25410853 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25410791 CCGATCCAAT
*
25410801 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25410827 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25410853 C
1 C
25410854 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25411072 original size:355 final size:363
Alignment explanation
Indices: 25410237--25411250 Score: 1125
Period size: 368 Copynumber: 2.8 Consensus size: 363
25410227 CTCTACGTGC
* * * * * *
25410237 TGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATG-AGCTCCCTATG
1 TGTCGGT-CCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTA-CTTCATTTG
* * * *
25410301 CCTAAGCGAACCCACGAAATGGGCATGTGGGCACTCAGCCGATC-GAAGAGGCAGAATGCGCAAG
64 CCTAAGCCAACCCACGAAATGAGCGTGTGGGCACTCAGCCGACCAG-AGAGGCAGAATGCGCAAG
* * * * * *
25410365 TC-GGGGATCAGCCCGGTCCACCCTGCGTGCAGTCAATCCTGCTGCCGCAACCCTCGATCTGGTT
128 CCAGGGGATCAGCCC-GTCC-CCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTC
* * * * * *
25410429 TGATCTTAGACTGAGAATTAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
191 CGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
** * * * *
25410494 ACCCATAAAACGAGCGTGCAGGCCCTCAGTCGACCGAAGAGGCTGATCGGAGAGGCATAATACAC
256 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCTCAT--GAGAGG-ATAATACAC
25410559 GAGCTGAGGATCAGCCCGATCCCTCTCTGCGTACTGTCGATCCCGT
318 GAGCTGAGGATCAGCCCGATCCCTCTCTGCGTACTGTCGATCCCGT
** * * * * * *
25410605 TACCAGTCCTACTACCACAACCCTCAGTCCGACTGGGGCTTAGACGGGGAATGTACTTCATTTAC
1 TGTCGGTCC-GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTTCATTTGC
*
25410670 CTAAGCCAACCCAC-AGAATGAGCGTGTGGGCGCTCAGCC-AGCCAGAGAGGCAGAATGCGCAAG
65 CTAAGCCAACCCACGA-AATGAGCGTGTGGGCACTCAGCCGA-CCAGAGAGGCAGAATGCGCAAG
** * * *
25410733 -CAGGGGATTGGCCCGATCCCCTCTGCATGCTG-CTGATCCTGCTGCCACAACCCTAGATCCGAT
128 CCAGGGGATCAGCCCG-TCCCC-CTGCATGCTGTC-GATCCTGCTGCCGCAACCCTCGATCCGGT
*
25410796 CCAATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
190 CCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
* * * * * *
25410861 AACCCACGAAACGAGCTTGCGGGTGCTCAGCCGGCCGGAGA-GC-CAT-A-ATG-T-GTA-A-G-
255 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCTCATGAGAGGATAATACACGA
* * * * *
25410917 TC-GGGGATCAGCCTGGTCCCTCTCTGCGTGCTGTCGATCCCGT
320 GCTGAGGATCAGCCCGATCCCTCTCTGCGTACTGTCGATCCCGT
* *
25410960 TGTCGGTCTCGCTGCCACAACCCTCGGGCCGACTGGGGCTTAGACGTGGAATGTACTTCGTTTGC
1 TGTCGGTC-CGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTTCATTTGC
* *
25411025 CTAAGCCAACCCACGAAATGAGCGTGCT-GGC-CTTCAGCCGACCAGAGAGGCAGAACGTGCAAG
65 CTAAGCCAACCCACGAAATGAGCGTG-TGGGCAC-TCAGCCGACCAGAGAGGCAGAATGCGCAAG
* * *
25411088 CCA-GGGATCAGCCCTGTCCCCCCTGCATGCTGTCGATCCTACTGCCGCAACCTTCGATTCGGTC
128 CCAGGGGATCAGCCC-GT-CCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTC
*
25411152 CGATCTTAGATTTGGGAATGAACTCCGTATGCTTAGACTGGGGAT-AACCTCCGTATGCCTAAGT
191 CGATCTTAGA-TTGGGAATGAACTCCATATGCTTAGACTGGGGATGAA-CTCCGTATGCCTAAGT
*
25411216 CAACCGACGAAACGAGCGTGCGGGCGCTCAGCCGA
254 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA
25411251 ACAGAGAGGC
Statistics
Matches: 547, Mismatches: 79, Indels: 52
0.81 0.12 0.08
Matches are distributed among these distances:
354 1 0.00
355 198 0.36
356 93 0.17
357 1 0.00
358 1 0.00
359 2 0.00
360 1 0.00
362 2 0.00
363 1 0.00
366 2 0.00
367 11 0.02
368 232 0.42
369 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (363 bp):
TGTCGGTCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTTCATTTGCC
TAAGCCAACCCACGAAATGAGCGTGTGGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCA
GGGGATCAGCCCGTCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATC
TTAGATTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCTCATGAGAGGATAATACACGAGCTGAG
GATCAGCCCGATCCCTCTCTGCGTACTGTCGATCCCGT
Found at i:25411311 original size:355 final size:350
Alignment explanation
Indices: 25410566--25411292 Score: 910
Period size: 355 Copynumber: 2.0 Consensus size: 350
25410556 CACGAGCTGA
* * ** * * * *
25410566 GGATCAGCCCGATCCCTCTCTGCGTACTGTCGATCCCGTTACCAGTCCTACTACCACAACCCTCA
1 GGATCAGCCCGGTCCCTCTCTGCGTGCTGTCGATCCCGTTGTCGGTCC-GCTGCCACAACCCTCG
* *
25410631 GTCCGACTGGGGCTTAGACGGGGAATGTACTTCATTTACCTAAGCCAACCCAC-AGAATGAGCGT
65 GTCCGACTGGGGCTTAGACGTGGAATGTACTTCATTTGCCTAAGCCAACCCACGA-AATGAGCGT
* ** *
25410695 GTGGGCGCTCAGCC-AGCCAGAGAGGCAGAATGCGCAAGCAGGGGATTGGCCCGATCCCCTCTGC
129 GTGGGCACTCAGCCGA-CCAGAGAGGCAGAATGCGCAAGCA-GGGATCAGCCCG-TCCCCCCTGC
* * * * *
25410759 ATGCTG-CTGATCCTGCTGCCACAACCCTAGATCCGATCCAATCTTAGATTGGGAATGAACTCCA
191 ATGCTGTC-GATCCTGCTGCCGCAACCCTCGATTCGGTCCGATCTTAGATTGGGAATGAACTCCA
* *
25410823 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGTGCT
255 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * * *
25410888 CAGCCGGCCGGAGAGCCATAATGTGTAAGTCGG
320 CAGCC-GACAGAGAGGC-TGATGTGCAAGCCAG
*
25410921 GGATCAGCCTGGTCCCTCTCTGCGTGCTGTCGATCCCGTTGTCGGTCTCGCTGCCACAACCCTCG
1 GGATCAGCCCGGTCCCTCTCTGCGTGCTGTCGATCCCGTTGTCGGTC-CGCTGCCACAACCCTCG
* *
25410986 GGCCGACTGGGGCTTAGACGTGGAATGTACTTCGTTTGCCTAAGCCAACCCACGAAATGAGCGTG
65 GTCCGACTGGGGCTTAGACGTGGAATGTACTTCATTTGCCTAAGCCAACCCACGAAATGAGCGTG
* *
25411051 CT-GGC-CTTCAGCCGACCAGAGAGGCAGAACGTGCAAGCCAGGGATCAGCCCTGTCCCCCCTGC
130 -TGGGCAC-TCAGCCGACCAGAGAGGCAGAATGCGCAAG-CAGGGATCAGCCC-GTCCCCCCTGC
* * *
25411114 ATGCTGTCGATCCTACTGCCGCAACCTTCGATTCGGTCCGATCTTAGATTTGGGAATGAACTCCG
191 ATGCTGTCGATCCTGCTGCCGCAACCCTCGATTCGGTCCGATCTTAGA-TTGGGAATGAACTCCA
*
25411179 TATGCTTAGACTGGGGAT-AACCTCCGTATGCCTAAGTCAACCGACGAAACGAGCGTGCGGGCGC
255 TATGCTTAGACTGGGGATGAA-CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
25411243 TCAGCCGAACAGAGAGGCTGGATGTGCAAGCCAG
319 TCAGCCG-ACAGAGAGGCT-GATGTGCAAGCCAG
25411277 GGATC-GACCCGGTCCC
1 GGATCAG-CCCGGTCCC
25411293 CCCAACATGC
Statistics
Matches: 322, Mismatches: 37, Indels: 25
0.84 0.10 0.07
Matches are distributed among these distances:
354 1 0.00
355 204 0.63
356 117 0.36
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (350 bp):
GGATCAGCCCGGTCCCTCTCTGCGTGCTGTCGATCCCGTTGTCGGTCCGCTGCCACAACCCTCGG
TCCGACTGGGGCTTAGACGTGGAATGTACTTCATTTGCCTAAGCCAACCCACGAAATGAGCGTGT
GGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGCAGGGATCAGCCCGTCCCCCCTGCATGCT
GTCGATCCTGCTGCCGCAACCCTCGATTCGGTCCGATCTTAGATTGGGAATGAACTCCATATGCT
TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
ACAGAGAGGCTGATGTGCAAGCCAG
Found at i:25411341 original size:185 final size:184
Alignment explanation
Indices: 25411022--25411367 Score: 437
Period size: 185 Copynumber: 1.9 Consensus size: 184
25411012 GTACTTCGTT
* * *
25411022 TGCCTAAGCCAACCCACGAAATGAGCGTGCTGGCCTTCAGCCGACCAGAGAGGCAGAACGTGCAA
1 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCCTTCAGCCGAACAGAGAGGCAGAACGTGCAA
* ** * * * *
25411087 GCCAGGGATCAGCCCTGTCCCCCCTGCATGCTGTCGATCCTACTGCCGCAACCTTCGATTCGGTC
66 GCCAGGGATCAGCCCGGTCCCCCCAACATGCTATCGATCCTACTGCCACAACCCTCGATTCGATC
*
25411152 CGATCTTAGATTTGGGAATGAACTCCGTATGCTTAGACTGGGGATAACCTCCGTA
131 CGATCTTAGA-CTGGGAATGAACTCCGTATGCTTAGACTGGGGATAACCTCCGTA
* * * * *
25411207 TGCCTAAGTCAACCGACGAAACGAGCGTGCGGGCGC-TCAGCCGAACAGAGAGGCTGGATGTGCA
1 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-CTTCAGCCGAACAGAGAGGCAGAACGTGCA
* ** *
25411271 AGCCAGGGATC-GACCCGGTCCCCCCAACATGCTATCGATCCTGCTGCCATGACCCTCG-GTCTG
65 AGCCAGGGATCAG-CCCGGTCCCCCCAACATGCTATCGATCCTACTGCCACAACCCTCGATTC-G
* *
25411334 ATCCGATCTTATACTGGGAATTAACTCCGTATGC
128 ATCCGATCTTAGACTGGGAATGAACTCCGTATGC
25411368 ATAAGTCAAC
Statistics
Matches: 136, Mismatches: 22, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
184 22 0.16
185 113 0.83
186 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (184 bp):
TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCCTTCAGCCGAACAGAGAGGCAGAACGTGCAA
GCCAGGGATCAGCCCGGTCCCCCCAACATGCTATCGATCCTACTGCCACAACCCTCGATTCGATC
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAACCTCCGTA
Found at i:25412132 original size:26 final size:26
Alignment explanation
Indices: 25412096--25412148 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25412086 TCAATCCGAT
25412096 CTTAGACTGGGAATGAACTAT-GTATG
1 CTTAGACTGGGAATGAACT-TCGTATG
*
25412122 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
25412148 C
1 C
25412149 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:25412172 original size:96 final size:96
Alignment explanation
Indices: 25411998--25412173 Score: 237
Period size: 96 Copynumber: 1.8 Consensus size: 96
25411988 ATGGCTCAAA
* * * *
25411998 ATCTTTGATTGGGAATGACCTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTACGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
*
25412063 CCACGAAATGAGCGTGCCGACGCTCAATCCG
66 CCACGAAACGAGCGTGCCGACGCTCAATCCG
* * * *
25412094 ATCTTAGACTGGGAATGAACTATGTATGCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTACGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
**
25412158 CCCGTGAAACGAGCGT
65 CCCACGAAACGAGCGT
25412174 ATGGGCACTC
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
95 1 0.01
96 67 0.99
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.24
Consensus pattern (96 bp):
ATCTTAGACTGGGAATGAACTACGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCCGACGCTCAATCCG
Found at i:25412492 original size:26 final size:26
Alignment explanation
Indices: 25412451--25412503 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25412441 TCGGTCTGAT
25412451 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25412477 CTTAGACTGGTG-ATGAACTCCGTATG
1 CTTAGACTGG-GAATGAACTCCATATG
25412503 C
1 C
25412504 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25412897 original size:366 final size:368
Alignment explanation
Indices: 25412093--25412898 Score: 877
Period size: 366 Copynumber: 2.2 Consensus size: 368
25412083 CGCTCAATCC
* * * * * *
25412093 GATCTTAGACTGGGAATGAACT-ATGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCA
1 GATCTTAGACTGGAAAAGAACTCA-ATATGCTTAGACTGGTGATGAACTCCATATGCCTAAGTCA
* ** * *
25412157 ACCCGTGAAACGAGCGTATGGGCAC-T---CAGCC-----GG-C--C-GGAGAGGCATAATGTGC
65 ACCCATGAAACGAGCGTGCGGGCGCTTAGCCAGCCGAAGAGGCCGACTGGAGAGGCATAATGCGC
* * * * *
25412209 AAGTCGATGATCAGCTCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCGGTCCTTCTACCACA
130 AAGCCGAGGATCAGCCCGGTCCCCCTCTACGTGCTATCGATCCCGCTACCGGTCCTTCTACCACA
* * * * *
25412274 ACCCTCGGTCTGACTGGGGCTTAGACGTGGAATGTACTCCGTTTCCCTAAGCCAAAGCATGAAAT
195 ACCCTCGGTCTGACTGGGGCTTAGACATGGAATGTACTCCGTATCCCTAAGCCAAACCAAGAAAC
* * * * * * *
25412339 GAGCGTGCGGGCTCTCAACCGATCGGAGAGGCAGAATGTAAAAGTCAGGGATCGACCCGATCCCC
260 GAGCGTGCGAGATCTCAACCGACCAGAGAGGCAGAATGCAAAAGCCAGGGATCAACCCGATCCCC
* * *
25412404 CCTGCGTGCTACCAATCCTGCGGCCGCAACCCTCGATTCGGTCT
325 CCTGCATGCTACCAATCCTGCGGCCACAACCCTCGATCCGGTCT
* * * *
25412448 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGTGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGAAAAGAACTCAATATGCTTAGACTGGTGATGAACTCCATATGCCTAAGTCAA
25412513 CCCATGAAACGAGCGTGCGGGCGCTTAGCCAGCCGAAGAGGCCGACTGGAGAGGCATAATGCGCA
66 CCCATGAAACGAGCGTGCGGGCGCTTAGCCAGCCGAAGAGGCCGACTGGAGAGGCATAATGCGCA
* * * *
25412578 AGCC-AGGGATCAGCCCGGTCCCCCTTTATGTGCTATCGATCCTGCTACCGGT-GTTGCTACCAC
131 AGCCGA-GGATCAGCCCGGTCCCCCTCTACGTGCTATCGATCCCGCTACCGGTCCTT-CTACCAC
* * * * *
25412641 AACCCTCGAT-TCGGCTGGGGCTTAGACATGGAATGTACTCTGTATGCCTAA-CCAATCCACAG-
194 AACCCTCGGTCT-GACTGGGGCTTAGACATGGAATGTACTCCGTATCCCTAAGCCAAACCA-AGA
** ** *
25412703 AACGAGCGTGC-AGATGCTCAGTCGACCAGAGAGGCA-AATGCGCAAGCCGGGGATCAACCC-AG
257 AACGAGCGTGCGAGAT-CTCAACCGACCAGAGAGGCAGAATGCAAAAGCCAGGGATCAACCCGA-
* * *
25412765 TCCCCCCTGCATGCTATCGATCCTGCTGCCACAACCCTCGATCCGGT-T
320 TCCCCCCTGCATGCTACCAATCCTGCGGCCACAACCCTCGATCCGGTCT
* *
25412813 CGATCTTTGACTGGAAAAGAACTCAATATGTTTAGACTAGG-GATGAACTCCATATGCCTAAGTC
1 -GATCTTAGACTGGAAAAGAACTCAATATGCTTAGACT-GGTGATGAACTCCATATGCCTAAGTC
25412877 AACCCATGAAACGAGCGTGCGG
64 AACCCATGAAACGAGCGTGCGG
25412899 ATGGTCAGTC
Statistics
Matches: 377, Mismatches: 52, Indels: 33
0.82 0.11 0.07
Matches are distributed among these distances:
355 80 0.21
356 1 0.00
359 5 0.01
364 2 0.01
365 3 0.01
366 137 0.36
367 39 0.10
368 110 0.29
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (368 bp):
GATCTTAGACTGGAAAAGAACTCAATATGCTTAGACTGGTGATGAACTCCATATGCCTAAGTCAA
CCCATGAAACGAGCGTGCGGGCGCTTAGCCAGCCGAAGAGGCCGACTGGAGAGGCATAATGCGCA
AGCCGAGGATCAGCCCGGTCCCCCTCTACGTGCTATCGATCCCGCTACCGGTCCTTCTACCACAA
CCCTCGGTCTGACTGGGGCTTAGACATGGAATGTACTCCGTATCCCTAAGCCAAACCAAGAAACG
AGCGTGCGAGATCTCAACCGACCAGAGAGGCAGAATGCAAAAGCCAGGGATCAACCCGATCCCCC
CTGCATGCTACCAATCCTGCGGCCACAACCCTCGATCCGGTCT
Found at i:25413758 original size:26 final size:26
Alignment explanation
Indices: 25413722--25413774 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25413712 CTGGTCAGAT
*
25413722 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25413748 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25413774 C
1 C
25413775 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25414120 original size:26 final size:26
Alignment explanation
Indices: 25414067--25414120 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
25414057 GATTCGATCA
* *
25414067 TAGACTGGGAATGAACTTCATATCCT
1 TAGACAGGGAATGAACTCCATATCCT
* * *
25414093 TAGACAGGGGATGAACTCCGTATGCT
1 TAGACAGGGAATGAACTCCATATCCT
25414119 TA
1 TA
25414121 AGTCAACCCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGACAGGGAATGAACTCCATATCCT
Found at i:25414469 original size:26 final size:26
Alignment explanation
Indices: 25414433--25414511 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
25414423 CTGGTCTGAT
25414433 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25414459 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25414485 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
25414511 C
1 C
25414512 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25415784 original size:158 final size:158
Alignment explanation
Indices: 25415505--25415804 Score: 433
Period size: 158 Copynumber: 1.9 Consensus size: 158
25415495 GCTTAGACGT
* * * * * *
25415505 GGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGTTGTTGAGCCGATCGGAG
1 GGAATGAACTCCGTATGCATAAGCTAACCCACGAAACGAGCGTACGGGTGCTGAGCCGATCGAAG
* * * *
25415570 AGGCAGAATGTGCAAGTCAGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCCTGCTGCAGTA
66 AGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCTGCATGCTGTCGATCCTGCTGCAGCA
*
25415635 ACCCTCGGTCCGATCCGATCTTAGATTG
131 ACCCTCGATCCGATCCGATCTTAGATTG
25415663 GGAATGAACTCCGTATGCATAAG-TCAACCCACGAAACGAGCGTACGGGTGCTGAGCCGATCGAA
1 GGAATGAACTCCGTATGCATAAGCT-AACCCACGAAACGAGCGTACGGGTGCTGAGCCGATCGAA
** * *
25415727 GAGGCAGAATGCGCAAGCCAAGGATCGACTTGATTCCCCCTGCATGCTG-CTGATCCTGCTGCCG
65 GAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCTGCATGCTGTC-GATCCTGCTGCAG
25415791 CAACCCTCGATCCG
129 CAACCCTCGATCCG
25415805 GTCTGATGAC
Statistics
Matches: 125, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
157 2 0.02
158 123 0.98
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCATAAGCTAACCCACGAAACGAGCGTACGGGTGCTGAGCCGATCGAAG
AGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCTGCATGCTGTCGATCCTGCTGCAGCA
ACCCTCGATCCGATCCGATCTTAGATTG
Found at i:25417104 original size:26 final size:26
Alignment explanation
Indices: 25417053--25417105 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25417043 CTGGTTTGAT
*
25417053 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25417079 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
25417105 C
1 C
25417106 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25418311 original size:26 final size:25
Alignment explanation
Indices: 25418275--25418353 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 25
25418265 CCGGTCTGAT
25418275 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGG-ATGAACTCTATATG
*
25418301 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACT-GGGATGAACTCTATATG
*
25418327 CATAGACTGAGGATGAACT-TCATATG
1 CTTAGACTG-GGATGAACTCT-ATATG
25418353 C
1 C
25418354 CTAAGTCTAC
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
25 1 0.02
26 43 0.91
27 3 0.06
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCTATATG
Found at i:25418717 original size:25 final size:26
Alignment explanation
Indices: 25418669--25418720 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
25418659 TCGGTCTGAT
*
25418669 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
25418695 CTTAGACT-GGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25418720 C
1 C
25418721 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25419941 original size:26 final size:26
Alignment explanation
Indices: 25419892--25419944 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25419882 CTGGTCTGAT
*
25419892 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25419918 CTTAGACTGGGGATGAA-TGCCGTATG
1 CTTAGACTGGGAATGAACT-CCGTATG
25419944 C
1 C
25419945 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25420602 original size:26 final size:26
Alignment explanation
Indices: 25420573--25420624 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25420563 GCTCAAAATA
*
25420573 TTAGAC-TGGGAATGAGCTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
*
25420599 TTAGACATGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
25420625 CTCAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:25421113 original size:26 final size:26
Alignment explanation
Indices: 25421072--25421124 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25421062 CTCGCCCGAT
*
25421072 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
*
25421098 CTTAGACGGGGGATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
25421124 C
1 C
25421125 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:25422697 original size:26 final size:26
Alignment explanation
Indices: 25422661--25422713 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25422651 CTGATCTGAT
*
25422661 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
25422687 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
25422713 C
1 C
25422714 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:25423203 original size:13 final size:13
Alignment explanation
Indices: 25423185--25423210 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25423175 GGTGCTCAGG
25423185 CGATCGGAGAGGC
1 CGATCGGAGAGGC
25423198 CGATCGGAGAGGC
1 CGATCGGAGAGGC
25423211 ATAATGCGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.46, T:0.08
Consensus pattern (13 bp):
CGATCGGAGAGGC
Found at i:25423497 original size:26 final size:26
Alignment explanation
Indices: 25423461--25423513 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25423451 CCGGTTTGAT
*
25423461 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25423487 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25423513 C
1 C
25423514 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25423806 original size:355 final size:353
Alignment explanation
Indices: 25423203--25423939 Score: 1001
Period size: 355 Copynumber: 2.1 Consensus size: 353
25423193 GAGGCCGATC
*** * * * *
25423203 GGAGAGGCATAATGCGAAGCTTAGGTTCAGCCTGGTCCCCCTCTGCGTTCTGTAGATCCCACTGT
1 GGAGAGGCATAATGCGAAGCCGGGGATCAGCCTGATCCCCCTCTACGTGCTGTAGATCCCACTGT
* * *
25423268 CGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTCGACATGGAATGTACTCCGTATGCCTA
66 CGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTA
* * *
25423333 AGCCAACCCATGAAACGAGCGTACGAGCGCTCAACCGGCCAGAGAGGCAGAATACGCAAGCCGGG
131 AGCCAACCCACGAAACGAGCGTACGAGCGCTCAACCGACCAAAGAGGCAGAATACGCAAGCCGGG
* * * * * * *
25423398 GATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGTAACACTCGATCCGGTTTGATCT
196 GATCAGCCCAGTCCCCCCTACGTGCTGCCAATCCTGCTGCCGTAACACTCGATCCAGTCTGATCT
* **
25423463 TAGACTGGGAATGAAC-TCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCAA
261 TAGACTAGGAATGAACTTC-GTATGCTTAGACCAGGGATGAACTCCGTATGCCTAAGTCAACCAA
* *
25423527 TGAAACAAGCGTGCGGGCGTTCAGCCGGCT
325 TGAAACAA-CGTGCGAGCGTTCAGCCGACT
* *
25423557 GGAGAGGCATAATGCGCAAGCCGGGGATCAG-CTCGATCCCCCTCTACGTGCTGTCGATCCCGCT
1 GGAGAGGCATAATGCG-AAGCCGGGGATCAGCCT-GATCCCCCTCTACGTGCTGTAGATCCCACT
* *
25423621 GTCGATCCTGCTGCCACAACTCTCGGTCCGATTGGGGCTTAGACATGGAATGTACTCCGTATGCC
64 GTCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCC
* * * * *
25423686 TAAGGCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGAGGCAGAATGCGCAAGCCG
129 TAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAACCGACCAAAGAGGCAGAATACGCAAGCCG
* * ** *
25423751 GGGATCAGCTCAGTCCCCCCTACGTGCTGCCAATTCTGCTTTCGTAACCCTCGATCCAGTCTGAT
194 GGGATCAGCCCAGTCCCCCCTACGTGCTGCCAATCCTGCTGCCGTAACACTCGATCCAGTCTGAT
* * *
25423816 CTTATACTAGGAATGAACTTCGTATGCTTAGACCAGGGATGAACTCTGTATGCCTAAGTCAACCC
259 CTTAGACTAGGAATGAACTTCGTATGCTTAGACCAGGGATGAACTCCGTATGCCTAAGTCAACCA
*
25423881 ATGAAACGACGTGCGAGCGTTCAGCCGACT
324 ATGAAACAACGTGCGAGCGTTCAGCCGACT
* **
25423911 AGAGAGGCAGGATGCGTAAGCCGGGGATC
1 GGAGAGGCATAATGCG-AAGCCGGGGATC
25423940 GAATGGGTGG
Statistics
Matches: 333, Mismatches: 47, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
354 62 0.19
355 269 0.81
356 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (353 bp):
GGAGAGGCATAATGCGAAGCCGGGGATCAGCCTGATCCCCCTCTACGTGCTGTAGATCCCACTGT
CGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTA
AGCCAACCCACGAAACGAGCGTACGAGCGCTCAACCGACCAAAGAGGCAGAATACGCAAGCCGGG
GATCAGCCCAGTCCCCCCTACGTGCTGCCAATCCTGCTGCCGTAACACTCGATCCAGTCTGATCT
TAGACTAGGAATGAACTTCGTATGCTTAGACCAGGGATGAACTCCGTATGCCTAAGTCAACCAAT
GAAACAACGTGCGAGCGTTCAGCCGACT
Found at i:25424930 original size:159 final size:157
Alignment explanation
Indices: 25424564--25425064 Score: 587
Period size: 159 Copynumber: 3.2 Consensus size: 157
25424554 GCTCCGTATG
* *
25424564 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAACCGAGTGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
25424629 CGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGAACCGGTCCCCCTGCGTGCTGTCCAG-CCT
66 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTG-CCGGTCCT
* **
25424693 ACTGCCGTAACCCTCGGTCCGGTCCGAT
130 GCTGCCACAACCCTCGGTCCGGTCCGAT
* * * * *
25424721 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
25424785 CCGGTCGAAGAGGCATAATGCGCAAGCCGGGGATAGGCCCGGTCCACCTCTGCGTGCTGCCGGTC
65 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCC-CC-CTGCGTGCTGCCGGTC
* ** *
25424850 CTGCTGCCACAACCCTCGGTCTGGCTGGGGT
128 CTGCTGCCACAACCCTCGGTCCGG-TCCGAT
* * * *
25424881 -TTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
** * * *
25424945 CGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCTGCCCGGTCCCCCCTGCGTGCTGCCGATCCT
66 CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCTGCGTGCTGCCGGTCCT
** * * **
25425010 GCTATCGCAACCCTCGATCCGGTTTGAT
130 GCTGCCACAACCCTCGGTCCGGTCCGAT
25425038 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
25425065 TTAGACTGGG
Statistics
Matches: 289, Mismatches: 46, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
156 1 0.00
157 98 0.34
158 62 0.21
159 122 0.42
160 6 0.02
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTGCCGGTCCTG
CTGCCACAACCCTCGGTCCGGTCCGAT
Found at i:25425067 original size:26 final size:26
Alignment explanation
Indices: 25425038--25425090 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25425028 CCGGTTTGAT
25425038 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25425064 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25425090 C
1 C
25425091 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25426970 original size:355 final size:357
Alignment explanation
Indices: 25426097--25427110 Score: 1094
Period size: 355 Copynumber: 2.8 Consensus size: 357
25426087 CTCTCTGCAT
* * * *
25426097 ACTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCTAGGGC-AATGACATGGAATG-AGCTCCCT
1 ACTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTA-GATATGGAATGTA-CTCCGT
* * * * * * *
25426160 ATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAGCCAAAGGGAGAGGC-GAAATGCAT
64 ATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAACCGAACGGAGAGGCAG-AATGCAC
* * * * * * * *
25426224 AAGTCGAGGATT-GGCCCGGTCCCCTCTGTGTGCTGTCGATCCTGCTATCGCAACCCTCGTTCCG
128 AAGCCG-GGGTTCGACCTGGTCCCCCCTGTGTGCTATCGATCCTGCTATCGCAACCCTCGATCTG
* * *
25426288 AT-TCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGCTGAACTCCGTATGCCTAA
192 ATCT-GATCTTAGACTAGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCTGTATGCCTAA
* *
25426352 GTCAACCCATAAAACGAGCGTGCGGGTGCTCAATCAGTCGGAGATGTCGGCCGGAGAGGCATAAT
256 GTCAACCCACAAAACGAGCGTGC-GG-GCGC--TCAGTC------G-CGGCCGGAGAGGCATAAT
*
25426417 AAACAAACCGAGGATCAGCCCGGTCCCCCTCTACATGCTGCCGATCCC
310 AAACAAACCGAGGATCAGCCCGATCCCCCTCTACATGCTGCCGATCCC
* * * * *
25426465 ACTGCCAGTCCTGCTGCCATAACCCTCGGTCCGACTGGGGTTTAGACT-TGGAATGTACTCTGTA
1 ACTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGA-TATGGAATGTACTCCGTA
* * * * * * ** * **
25426529 TGACTAAGCCAACCGATGAAATGAGCATACGAGCACTCAATAGACCGGAGAGGCAGAATGTGCAA
65 TGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAACCGAACGGAGAGGCAGAATGCACAA
* * * * * *
25426594 GCCGAGGATC-AGCTCGGTCCCCCCTGTGTGTTATCGATCTTGCTATCGCAACCCTCGATCTGGT
130 GCCGGGGTTCGACCT-GGTCCCCCCTGTGTGCTATCGATCCTGCTATCGCAACCCTCGATCTGAT
* *
25426658 CTGATCTTAGACTAGGAATGGACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTC
194 CTGATCTTAGACTAGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTC
* * ** *
25426723 AACCCACAAAACGAGTGTGCGGGCGCTCAG-C-CGGTCGGAGAGGCATAATACGCAAGCC-AGGG
259 AACCCACAAAACGAGCGTGCGGGCGCTCAGTCGCGGCCGGAGAGGCATAATAAACAAACCGA-GG
* * *
25426785 ATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCCC
323 ATCAGCCCGATCCCCCTCTACATGCTGCCGATCCC
* * *
25426820 GCTGTCGGTCTTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGATATGGAATGTACTCCGTAT
1 ACTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGATATGGAATGTACTCCGTAT
* * * *
25426885 GCCTAAGCCAACCCACGAAACGAGCTTGCGGGTGCTCAACCGATCGGAGAGGCAGAATGCACAAG
66 GCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAACCGAACGGAGAGGCAGAATGCACAAG
* * * * * *
25426950 CCGGGGTTCGACCTGGTCCCCCCTATGTGCTACCGATCCTGCTGTCGCATCCCTCAATCTGATCC
131 CCGGGGTTCGACCTGGTCCCCCCTGTGTGCTATCGATCCTGCTATCGCAACCCTCGATCTGATCT
* * * *
25427015 GATCTTAGACTGGGAATGAACTCTATATGCTTAGATTGGGGATGAACTCTATATGCCTAAGTGAA
196 GATCTTAGACTAGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAA
* **
25427080 CCCACGAAACGAGCGTGCGAACGCTCAGTCG
261 CCCACAAAACGAGCGTGCGGGCGCTCAGTCG
25427111 ACCAGAGAGG
Statistics
Matches: 533, Mismatches: 101, Indels: 35
0.80 0.15 0.05
Matches are distributed among these distances:
354 2 0.00
355 294 0.55
356 4 0.01
363 1 0.00
364 4 0.01
366 3 0.01
367 5 0.01
368 216 0.41
369 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (357 bp):
ACTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGATATGGAATGTACTCCGTAT
GCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAACCGAACGGAGAGGCAGAATGCACAAG
CCGGGGTTCGACCTGGTCCCCCCTGTGTGCTATCGATCCTGCTATCGCAACCCTCGATCTGATCT
GATCTTAGACTAGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAA
CCCACAAAACGAGCGTGCGGGCGCTCAGTCGCGGCCGGAGAGGCATAATAAACAAACCGAGGATC
AGCCCGATCCCCCTCTACATGCTGCCGATCCC
Found at i:25427054 original size:26 final size:26
Alignment explanation
Indices: 25427018--25427070 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25427008 CTGATCCGAT
25427018 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
25427044 CTTAGATTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
25427070 C
1 C
25427071 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:25428293 original size:26 final size:26
Alignment explanation
Indices: 25428248--25428298 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
25428238 GATCTTACAT
*
25428248 TGGGAATGAACTCTGCATGCCTAAGC
1 TGGGAATGAACTCGGCATGCCTAAGC
* * *
25428274 TGGGGATGAACTCGGTATGCGTAAG
1 TGGGAATGAACTCGGCATGCCTAAG
25428299 TCAAACCACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.24
Consensus pattern (26 bp):
TGGGAATGAACTCGGCATGCCTAAGC
Found at i:25428650 original size:26 final size:26
Alignment explanation
Indices: 25428611--25428664 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
25428601 AGTCTGATCA
*
25428611 TAGACTGGGAATGACCTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
25428637 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
25428663 TA
1 TA
25428665 AGTTAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:25429014 original size:26 final size:26
Alignment explanation
Indices: 25428965--25429015 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
25428955 AATCTTATCT
* *
25428965 TAGACTGGGAATGAACTTCGTATGCA
1 TAGACTGGGAATGAACTCCATATGCA
*
25428991 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
25429016 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCA
Found at i:25430060 original size:159 final size:157
Alignment explanation
Indices: 25429717--25430269 Score: 422
Period size: 158 Copynumber: 3.5 Consensus size: 157
25429707 GAGCTCCTAT
* * * ** *
25429717 GCTTAGACATGGAATGAACTCCGTATTCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTAAGGGCACTCAG
25429782 CCGGTCAGAGAGGCGAATGCCCAAGCCGAGGATCGACCCAGTCCCCCCTGCATGCTATCGATCGT
66 CCGGTCAGAGAGGCGAATGCCCAAGCCGAGGATCGACCCAGTCCCCCCTGCATGCTATCGATCGT
* * **
25429847 GCTGCCACAACCCTCTGTTTGGCCCGA
131 GCTACCACAACCCTCGGTCCGGCCCGA
* * * * *
25429874 TCTTAGA-ATGGGAATTAACTCCGTATGCATAAGTCAACCTACGAAACGAGCGTAAGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTAAGGGCACTCA
* * * * * *
25429938 GCCGGTC-GAAGAGGCATAATGCGCAAGTCGAGGATGGTCCC-GATCCCCCTCTGCATGCTGTCG
65 GCCGGTCAG-AGAGGC-GAATGCCCAAGCCGAGGATCGACCCAG-TCCCCC-CTGCATGCTATCG
** *
25430001 ATC-TCGCTACCACAACCCTCGGTCCGGCTGGG
126 ATCGT-GCTACCACAACCCTCGGTCCGGCCCGA
* * * * * * * ** **
25430033 GCTTAGACCTGGAATGAGCTCCCTATGCCTAACCCAACCCATGAAATG-GACGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAG-CGTAAGGGCACTCA
* ** * * * *
25430097 GCCGGCCAGAGAGGCAGAATGCGTAAGTC-AGGGATC-AGCCC-GTTCCCCCCTACGTGCTACCG
65 GCCGGTCAGAGAGGC-GAATGCCCAAGCCGA-GGATCGA-CCCAG-TCCCCCCTGCATGCTATCG
* * * ** *
25430159 ATCCTGCTATCACAACCATCGGTCCGATCTGA
126 ATCGTGCTACCACAACCCTCGGTCCGGCCCGA
* * * * * ** *
25430191 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTAAGGGCACTCA
*
25430255 GCCGGTCGGAGAGGC
65 GCCGGTCAGAGAGGC
25430270 CGACCGGAGA
Statistics
Matches: 313, Mismatches: 69, Indels: 27
0.77 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 65 0.21
158 125 0.40
159 118 0.38
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTAAGGGCACTCAG
CCGGTCAGAGAGGCGAATGCCCAAGCCGAGGATCGACCCAGTCCCCCCTGCATGCTATCGATCGT
GCTACCACAACCCTCGGTCCGGCCCGA
Found at i:25430567 original size:26 final size:26
Alignment explanation
Indices: 25430531--25430583 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25430521 CTGGTCCAAT
*
25430531 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
25430557 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
25430583 C
1 C
25430584 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:25430938 original size:368 final size:365
Alignment explanation
Indices: 25430192--25430992 Score: 944
Period size: 368 Copynumber: 2.2 Consensus size: 365
25430182 CCGATCTGAT
* * * *
25430192 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* ** * * * * **
25430257 CGGTCGGAGAGGCCGACCGGAGAGGCACAATGTACAAGCAGGGGATCAGCTGATCCTCCTCTGTG
66 CGATCAAAGAAGCCGACCGGAGAGGCACAATGTACAAGCAGAGGATCAGCCGATCCCCCTCTGCA
** * * *
25430322 TGCTACTGATCCGGCTGCTAGTCCTACTACCACAACCCTCAGTCCGGCTGGGGCTTAACGTGGAA
131 TGCTACCAATCCGGCTGCGAGCCCTACTACCACAACCCTCAGTCCGGCTAGGGCTTAACGTGGAA
* * ** *
25430387 TGTACTCCGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGAGCGTTCAGCCGGCCGGAGAGGT
196 CGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCACTCAGCCGACCGGAGAGGT
* * * * * * *
25430452 AGAATGCGTAAGTCGGGATCGGCTCGGTCCCCTCTACGCGTTGCCGATCCTATTACCGCAACCCT
261 AGAATGCGCAAGCCGGGATCGGCCCGATCCCCTCTACGCGCTACCGATCCTACTACCGCAACCCT
* * *
25430517 CGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
326 CGATCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATG
* * * *
25430557 CTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCAGGCGCTCGGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * ** * *
25430622 CGATCAAAGAAGCCGATCGGAGAGGCATAATGTGTAAGCTGAGGATCAGCCCGGTCCCCCTCTGC
66 CGATCAAAGAAGCCGACCGGAGAGGCACAATGTACAAGCAGAGGATCAG-CCGATCCCCCTCTGC
* * * * *
25430687 ATGCTGCCAATCTC-GCTGTCGA-CCCTGCTGCCACAACCCTCGGTTCGGCTAGGGCTTAGACGT
130 ATGCTACCAATC-CGGCTG-CGAGCCCTACTACCACAACCCTCAGTCCGGCTAGGGCTTA-ACGT
* * *
25430750 GGAACGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-AGGCACTCAGCCGATCGGA
192 GGAACGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGA-GCACTCAGCCGACCGGA
* ** * * *
25430814 GAGGTAGAATGTGCAAGCCGGGGATCGGCCCGATCGCCC-CTGGGTGCTACCGATCCTGCTGCCG
256 GAGGTAGAATGCGCAAGCC-GGGATCGGCCCGATC-CCCTCTACGCGCTACCGATCCTACTACCG
** *
25430878 CAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTTCGTATG
319 CAACCCTCGATCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATG
* * *
25430925 CTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
25430990 CGA
66 CGA
25430993 CCGGAGAGGC
Statistics
Matches: 362, Mismatches: 67, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
365 96 0.27
366 54 0.15
367 77 0.21
368 132 0.36
369 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (365 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGATCAAAGAAGCCGACCGGAGAGGCACAATGTACAAGCAGAGGATCAGCCGATCCCCCTCTGCA
TGCTACCAATCCGGCTGCGAGCCCTACTACCACAACCCTCAGTCCGGCTAGGGCTTAACGTGGAA
CGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCACTCAGCCGACCGGAGAGGT
AGAATGCGCAAGCCGGGATCGGCCCGATCCCCTCTACGCGCTACCGATCCTACTACCGCAACCCT
CGATCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATG
Found at i:25430940 original size:26 final size:26
Alignment explanation
Indices: 25430899--25430949 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
25430889 CCGGTCTGAT
*
25430899 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
25430925 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
25430950 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25432632 original size:368 final size:365
Alignment explanation
Indices: 25431955--25432879 Score: 1083
Period size: 368 Copynumber: 2.5 Consensus size: 365
25431945 ATCGGTCTAC
* * * *
25431955 CTGGGGCTTGGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCATGAAATG-GACGTGCGGG
1 CTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGG
* * * * * * * * * * *
25432018 CGCTCAGTCAGCCGGGGAGGCAAAATACTAAGTCGGGGATTGTCCCGGTCCCCTCTTCATGCTGT
64 TGCTCAGTCA-TCAGAGAGGCAGAATACCAAGCCGGGGATCGACCCGGTCCCC-CTACATGCTAT
* *
25432083 CGATCCTGCTGCCACAACCCTC-AGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTT
127 CGATCCTGCTGTCGCAACCCTCGA-TCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTT
* * * * * * **
25432147 AGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTATAGGCGCTCAACCGG
191 AGACTAGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACAGGCACTCAACCAA
* * *
25432212 CCGAAGAGGCCAGCCAGAGAGGCATAATACGTAAGCTGAGGATCAACCCGATCCCCCTCTGTGTG
256 CCGAAGAGGCCAGCCAGAGAGGCATAATACGTAAGCTGAGGATCAACCCGATCCCCCTCGGCGCG
* *
25432277 CTG-CTGATCCCGCTACCGGTCCTGCTGCCATAACCCTTGCTCCGG
321 CTGTC-GATCCCGCTACCGGTCCTGCTGCCATAACCCTCGCTCCAG
*
25432322 CTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTG
1 CTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTG
* * *
25432387 CTCAGTCGATCAGAGAGGCAGAATACGCAAGCCAGGGATC-AGCCCGATCCCACCTACATGCTAC
66 CTCAGTC-ATCAGAGAGGCAGAATAC-CAAGCCGGGGATCGA-CCCGGTCCC-CCTACATGCTAT
* * * *
25432451 CGATCCTACTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
127 CGATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTA
* * ** *
25432516 GACTAGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGTCAAT
192 GACTAGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACAGGCACTCAACCAAC
* * *
25432581 CGAAGAGGCC-GACCAGAGAGGCATAATGCGTAAGCT-AGGGATCAGCCCGATCCCTCTCGGCGC
257 CGAAGAGGCCAG-CCAGAGAGGCATAATACGTAAGCTGA-GGATCAACCCGATCCCCCTCGGCGC
* *
25432644 GCTGTCGATCCCGCTGCCGGTCCTGCTGCCATAACCCTCGGTCCAG
320 GCTGTCGATCCCGCTACCGGTCCTGCTGCCATAACCCTCGCTCCAG
* **
25432690 CTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-TATC
1 CTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGT-
* * * * * *
25432754 GCTTAACTAATCAGAGAGGTAGAATGCACAAGCCGGGGATCGACCTGGTCCCCCTACATGCTATC
65 GC-TCAGTCATCAGAGAGGCAGAATAC-CAAGCCGGGGATCGACCCGGTCCCCCTACATGCTATC
* * * ** * *
25432819 GATCCTGCTGTCGCAACCCTAGGTTCGATCCAATATTAGACTGGGAATGAACTCTATATGC
128 GATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGC
25432880 ATAAGTCAAC
Statistics
Matches: 472, Mismatches: 73, Indels: 26
0.83 0.13 0.05
Matches are distributed among these distances:
367 140 0.30
368 325 0.69
369 7 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (365 bp):
CTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTG
CTCAGTCATCAGAGAGGCAGAATACCAAGCCGGGGATCGACCCGGTCCCCCTACATGCTATCGAT
CCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT
AGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACAGGCACTCAACCAACCGAA
GAGGCCAGCCAGAGAGGCATAATACGTAAGCTGAGGATCAACCCGATCCCCCTCGGCGCGCTGTC
GATCCCGCTACCGGTCCTGCTGCCATAACCCTCGCTCCAG
Done.