Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 261 of 402
Found at i:25433210 original size:26 final size:26
Alignment explanation
Indices: 25433171--25433220 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
25433161 GGTTTGATCC
*
25433171 TAGACTGGGAATGAACTCTGTATGTT
1 TAGACTGGGAATGAACTCCGTATGTT
25433197 TAGACTAGGG-ATGAACTCCGTATG
1 TAGACT-GGGAATGAACTCCGTATG
25433221 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGTT
Found at i:25433439 original size:13 final size:13
Alignment explanation
Indices: 25433421--25433446 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25433411 CAACCCATGA
25433421 AACGAGCGTACGG
1 AACGAGCGTACGG
25433434 AACGAGCGTACGG
1 AACGAGCGTACGG
25433447 GTGCTCAGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.38, T:0.08
Consensus pattern (13 bp):
AACGAGCGTACGG
Found at i:25433578 original size:26 final size:26
Alignment explanation
Indices: 25433549--25433601 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25433539 CCGGTCTGAT
25433549 CTTACACTGG-GAATCAACTCCGTATG
1 CTTACACTGGAG-ATCAACTCCGTATG
* *
25433575 CTTAGACTGGAGATGAACTCCGTATG
1 CTTACACTGGAGATCAACTCCGTATG
25433601 C
1 C
25433602 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGAGATCAACTCCGTATG
Found at i:25435189 original size:26 final size:26
Alignment explanation
Indices: 25435139--25435191 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25435129 CCAGTCCAAT
* *
25435139 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAAATACGTATG
* *
25435165 CTTAGACTAGGGATGAAATATGTATG
1 CTTAGACTAGGAATGAAATACGTATG
25435191 C
1 C
25435192 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATACGTATG
Found at i:25435246 original size:13 final size:13
Alignment explanation
Indices: 25435228--25435255 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
25435218 CGGGCGTTCA
25435228 GCCGACTGGAGAG
1 GCCGACTGGAGAG
25435241 GCCGACTGGAGAG
1 GCCGACTGGAGAG
25435254 GC
1 GC
25435256 ATAATGCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.25, G:0.46, T:0.07
Consensus pattern (13 bp):
GCCGACTGGAGAG
Found at i:25435365 original size:26 final size:26
Alignment explanation
Indices: 25435336--25435388 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25435326 TCGGTCCAAT
*
25435336 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25435362 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25435388 C
1 C
25435389 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25436288 original size:25 final size:26
Alignment explanation
Indices: 25436242--25436293 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
25436232 TTGGTCTGAT
25436242 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25436268 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25436293 C
1 C
25436294 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25436613 original size:26 final size:26
Alignment explanation
Indices: 25436577--25436629 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25436567 CTGGTCTGAT
25436577 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25436603 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25436629 C
1 C
25436630 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25437804 original size:26 final size:26
Alignment explanation
Indices: 25437775--25437827 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25437765 CCGATTCGAT
25437775 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
25437801 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
25437827 C
1 C
25437828 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:25438159 original size:26 final size:26
Alignment explanation
Indices: 25438130--25438182 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25438120 CCGGTCTGAT
*
25438130 CTTAGACTGG-GAATGAGCTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
25438156 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
25438182 C
1 C
25438183 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:25438870 original size:26 final size:26
Alignment explanation
Indices: 25438841--25438893 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25438831 CCGATCCAAT
25438841 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25438867 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25438893 C
1 C
25438894 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25439391 original size:355 final size:359
Alignment explanation
Indices: 25438975--25439793 Score: 968
Period size: 367 Copynumber: 2.3 Consensus size: 359
25438965 GCAAGCCGGG
** * * * * *
25438975 GATCCTACTGCCGCAACCCTTGGTCTGATCCGATCTGAAACTGGGAATGAACTTCGTATGCTTAG
1 GATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAG
** *
25439040 ACT-GGGGATGAACT-TCGTATGCCTAAGTCAACCCACAAAATGAGCATGTGGGCATTCAG-C-C
66 A-TAGGGGATGAACTCT-GTATGCCTAAGTCAACCCACAAAATGAGCATACGGACATTCAGCCAC
* * *
25439101 -A-G-CCGGAGAGGCATAATGCGCAAGCTGAGGATC-AGCCCGATCCCCCTCTGCATGCTACCGA
129 GACGACCGAAGAGGCATAATGCGCAAGCTGAGGATCTA-CACGATCCCCCTCTACATGCTACCGA
* * *
25439162 TCCCGCTACCAGTCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCC
193 TCCCGCTACCAGTCCTACTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGTACTCC
* ** *
25439227 GTATGCCTAAGCCAACCCACGAAACAAGCGTGCAAGCGCTCAGTTGGCCGGAGAGGCAGAATGCA
258 GTATGCCTAAGCCAACCCACGAAACAAGC-TACAAGCGCTCAGCCGGCCAGAGAGGCAGAATGCA
* * * *
25439292 CAAGCCAGGGATCGGTCCGGTCCCCCTTGCGTGCT-AC
322 CAAGCCAGGGATCGATCCGATCCCCCCTACGTGCTGAC
*
25439329 AGATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGCAC-TCTGTATGCTT
1 -GATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTC-GTATGCTT
** * *
25439393 AGATAGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGACGTTCAGCCGA
64 AGATAGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCATACGGACATTCAGCC-A
*
25439458 TCGGAGAGTCGACCGAAGAGGCATAATGCGCAAGCTGAGGATCTACACGGTCCCCCTCTACATGC
128 -C---GA--CGACCGAAGAGGCATAATGCGCAAGCTGAGGATCTACACGATCCCCCTCTACATGC
** * * **
25439523 TGTCGATCTCGCTACCAGTCCTACTGCCACAACCCTCGGTCTGACTAGGGCTTAGATGTGGAATG
187 TACCGATCCCGCTACCAGTCCTACTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATG
* * * * *
25439588 TACTCTGTATGCCTAAGGCAACCCATGAAACTAGCTACGAGCGCTCAGCCGGCCAGAGAGGCAGA
252 TACTCCGTATGCCTAAGCCAACCCACGAAACAAGCTACAAGCGCTCAGCCGGCCAGAGAGGCAGA
* *
25439653 ATGCGCAAGCCAGGGATCGATCCGATCCCCCCTACGTGCTGTC
317 ATGCACAAGCCAGGGATCGATCCGATCCCCCCTACGTGCTGAC
* *
25439696 GATCCTGCTATCG-TA-CCTCGAATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGC-TA
1 GATCCTACTATCGCAACCCTCG-ATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTA
*
25439758 GGGATA--GGATGAACTCTGGA-GCCTAAGTCAACCCAC
65 --GATAGGGGATGAACTCTGTATGCCTAAGTCAACCCAC
25439794 CGAAACCAAG
Statistics
Matches: 395, Mismatches: 48, Indels: 34
0.83 0.10 0.07
Matches are distributed among these distances:
354 3 0.01
355 102 0.26
356 2 0.01
359 1 0.00
363 16 0.04
364 20 0.05
365 36 0.09
366 79 0.20
367 135 0.34
368 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (359 bp):
GATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAG
ATAGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCATACGGACATTCAGCCACGA
CGACCGAAGAGGCATAATGCGCAAGCTGAGGATCTACACGATCCCCCTCTACATGCTACCGATCC
CGCTACCAGTCCTACTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGTACTCCGTA
TGCCTAAGCCAACCCACGAAACAAGCTACAAGCGCTCAGCCGGCCAGAGAGGCAGAATGCACAAG
CCAGGGATCGATCCGATCCCCCCTACGTGCTGAC
Found at i:25441129 original size:158 final size:156
Alignment explanation
Indices: 25440838--25441336 Score: 506
Period size: 158 Copynumber: 3.2 Consensus size: 156
25440828 GCTCCATATG
* * *
25440838 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGC
* * * * * * *
25440903 CGGTTGGAGAGGCAGAATGCGCAAGCTGGGGATTGACCCGATCCCTCCTACGTGCTATCGATCTC
66 C-GATGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCGGTTCCCT-CTGCGTGCTGTCGATCTC
*
25440968 GCTGCTGCAACCCTCAGTTTGGTCT-GAT
129 GCTGCTGCAACCCTC-GTTCGGTCTCGAT
* * * * * *
25440996 CTTAGAC-TGGGAATGAACTCAGTATGCATAAGTCAACACATGAAACGAGCGTGTGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
* * * *
25441060 CCGACTGAAGAGGCATAATGCGCAAGCCGGGGATTGGCCTGGTTCCCTCTGCGTGTTGTCGATCC
65 CCGA-TGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCC-GGTTCCCTCTGCGTGCTGTCGATCT
** * * *
25441125 CGCTGCCACAACCCTCGGTCCGG-CTGGGT
128 CGCTGCTGCAACCCTC-GTTCGGTCTCGAT
* * * *
25441154 CTTAAACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTGTGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGTGGGCGCTCAG
* * * * *
25441218 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGTTGATCT
65 CCGAT-GGAGAGGCAGAATGCGCAAGCCGGGGATTGG-CCGGTTCCCTCTGCGTGCTGTCGATCT
* *
25441283 TGCTGCTGCAACCCTCGATTCGAT-TCGAT
128 CGCTGCTGCAACCCTCG-TTCGGTCTCGAT
*
25441312 CTTAGAC-TGGGAATGAACTTCGTAT
1 CTTAGACAT-GGAATGAACTCCGTAT
25441337 ACTTAGACTG
Statistics
Matches: 274, Mismatches: 56, Indels: 22
0.78 0.16 0.06
Matches are distributed among these distances:
157 8 0.03
158 257 0.94
159 9 0.03
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGC
CGATGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCGGTTCCCTCTGCGTGCTGTCGATCTCGC
TGCTGCAACCCTCGTTCGGTCTCGAT
Found at i:25441952 original size:355 final size:359
Alignment explanation
Indices: 25441130--25442128 Score: 1176
Period size: 355 Copynumber: 2.8 Consensus size: 359
25441120 GATCCCGCTG
* *
25441130 CCACAACCCTCGGTCCGGCTGGGTCTTAAACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCA
1 CCACAACCCTCGGTCC-GCTGGGTCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCA
* * *
25441194 TGAAACG-GACGTGTGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC
64 TGAAACGAG-CGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC
* * * * * *
25441258 GGTCCCCCCTGCATGCTGTTGATCTTGCTGCTGCAACCCTCGATTCGATTCGATCTTAGACTGGG
128 GGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATACGATCCGATCTTAGACTGGG
* * *
25441323 AATGAACTTCGTATACTTAGACTGGGGGTGAACTCTGTATGCCTAAGTCAACTCACGAAACGAGC
193 AATGAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
* *
25441388 ATGCGGGCGTTCAGTCGGCGGAAGAGGCCAGCCGAAAAGGCATAATGCACAAGTCGAGGATCAGT
258 ATGCGGGCGCTCAGT---C----GAGGCCAG-CGAAAAGGCATAATGCACAAGTCGAGGATCAGC
* * * * * *
25441453 CCGATCCCCCTATGCGTGTTGTCTATCCCGCTGTCGGTCTTGCTA
315 CCGATCCCCCTATGCATGCTGCCTATCCCGCTATCGGTCATACTA
*
25441498 CCACAACCCTCAGTCCGACTGGGTCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCG-CTGGGTCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCAT
* * * *
25441563 GAAACGAGCGTGCGGGCGCTCAATCGACCGGAGAGGC-GTAATGCGTAAGCCAGGGATCGGCCCG
65 GAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAG-AATGCGCAAGCCGGGGATCGGCCCG
* * * * * * * * * *
25441627 ATCCACCTTGCGTGCTGTCGATCCTGCTACCGTAACCCTCAATCCGGTCCAATCTTTGACTGGGA
129 GTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATACGATCCGATCTTAGACTGGGA
* * * *
25441692 ATGAACTTCGTATGCTTAGACTGGGGATGATCTCTGTATGCCTAAGTCAACCCACAAAATGAGCG
194 ATGAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCA
* * * *
25441757 TACGGGCGCTCAGTC-A-GTC-G-G-AGAGGCATAATGCGCAAGTC-AGGGATCAGCCC-AGTCC
259 TGCGGGCGCTCAGTCGAGGCCAGCGAAAAGGCATAATGCACAAGTCGA-GGATCAGCCCGA-TCC
* * ** *
25441815 CTCTCTGCATGCTGCCTATCTTGCTATTGGTCATACTA
322 CCCTATGCATGCTGCCTATCCCGCTATCGGTCATACTA
* * * *
25441853 CCACAACCCTCGGTCCAGTTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCC-GCTGGGTCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCAT
* * *
25441918 GAAACGAGCGTGCGGGCACTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGTCCGG
65 GAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGG
* * * * *
25441983 TCCCCCCTACGTGATG-CTGATCCTGCTGTCGCAACCCTTGATACGATCTGATCTTAGACTGGGA
130 TCCCCCCTGCGTGCTGTC-GATCCTGCTGCCGCAACCCTCGATACGATCCGATCTTAGACTGGGA
*
25442047 ATGAAC-TCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
194 ATGAACTTC-GTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
*
25442111 ATGCTGGCGCTCAGTCGA
258 ATGCGGGCGCTCAGTCGA
25442129 CCAGAGAGGC
Statistics
Matches: 537, Mismatches: 83, Indels: 34
0.82 0.13 0.05
Matches are distributed among these distances:
354 5 0.01
355 288 0.54
356 4 0.01
358 1 0.00
359 2 0.00
360 1 0.00
365 1 0.00
367 2 0.00
368 231 0.43
369 2 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (359 bp):
CCACAACCCTCGGTCCGCTGGGTCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATG
AAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT
CCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATACGATCCGATCTTAGACTGGGAAT
GAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATG
CGGGCGCTCAGTCGAGGCCAGCGAAAAGGCATAATGCACAAGTCGAGGATCAGCCCGATCCCCCT
ATGCATGCTGCCTATCCCGCTATCGGTCATACTA
Found at i:25442064 original size:26 final size:26
Alignment explanation
Indices: 25442035--25442087 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25442025 ACGATCTGAT
*
25442035 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25442061 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25442087 C
1 C
25442088 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25443452 original size:367 final size:367
Alignment explanation
Indices: 25442922--25443849 Score: 1069
Period size: 367 Copynumber: 2.5 Consensus size: 367
25442912 GCATGCGGGT
* * * * *
25442922 GCTCAGCCCGAT-AGAGAGGCAGAATGCGCAAG-TCGAGGATCGGTTTGGTCCCCCCTACGTGCT
1 GCTCAG-CCGATCGGAGAGGCAGAATGCGCAAGCT-GGGGATCGGCTCGGTCCCCCCTGCGTGCT
* * * * * *
25442985 GCCGATCCTACTGTCACAACCCACAATTCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCT
64 GTCGATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCT
* * * *
25443050 AAGATTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCG
129 TAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * *
25443115 ATCGGAAAGCCC-AGCCTG-AGAGGCATAATGCACAAGCTGGGGATCAGCCTGGTCCCCCTCTAC
194 ATCGGAAAGCCCGA-CC-GAAAAGGCATAATGCACAAGCCGAGGATCAGCCTGGT-CCCCTCTAC
* ** * * *
25443178 ATGCTATCGATCCTGCTGTCGGTCCTGCTGCCACAACCCTC-GATCCGACTGGGGCTTACACATG
256 ATGCTATCGATCCCGCTACCGGTACTGCTACCACAACCCTCAG-TCCGACTAGGGCTTACACATG
* * * *
25443242 GAATGTACTCCATATACCTAAGCCAACCTA-TAAAACGAACGTGCAGAC
320 GAATGAACTCCATATACCTAAGCCAACCCACGAAAA-GAACGTACAGAC
* * * *
25443290 GCTCAGTCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCTCGGT-CCCCCTGTGTCCTGT
1 GCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCCTGCGTGCTGT
* * *
25443354 CGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTGTTCTTA
66 CGATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTA
** * *
25443419 GACTAAGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGAT
131 GACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAT
* * ** * * * *
25443484 CGGAGAGGCCGACCGAAAAGGCATAATGCGTAAGCCGAGGATTAGCTTGGTCCCCTCTGCGTGCT
196 CGGAAAGCCCGACCGAAAAGGCATAATGCACAAGCCGAGGATCAGCCTGGTCCCCTCTACATGCT
* * * *
25443549 GTCGATCCCGCTACCGGTACTGCTACCACAACCCTCAGTCTGGCTAGGGCTTAGACATGGAATGA
261 ATCGATCCCGCTACCGGTACTGCTACCACAACCCTCAGTCCGACTAGGGCTTACACATGGAATGA
** * * ** * *
25443614 ACTCTGTATGCCTAAGCTAACCCACGAAAAGAGTGTACGGGC
326 ACTCCATATACCTAAGCCAACCCACGAAAAGAACGTACAGAC
* * * * ** * *
25443656 GCTTAGCCGATCGGAGAGCCAGCATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTGT
1 GCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCCTGCGTGCTGT
* *
25443721 CGATCCTGCTGTCGCAACCCTCGATCTGATCTGATCTTAGACTAGGAATGAACTCCATATGCTTA
66 CGATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTA
** * * * *
25443786 GACTGGGGATGAACTCTGTATGGCTAAGTCAACCCACGAAATGAGTGTGCAGGCGCTCAGCCGA
131 GACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA
25443850 CCAAAGAGAC
Statistics
Matches: 467, Mismatches: 86, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
366 131 0.28
367 298 0.64
368 37 0.08
369 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (367 bp):
GCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCCTGCGTGCTGT
CGATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTA
GACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAT
CGGAAAGCCCGACCGAAAAGGCATAATGCACAAGCCGAGGATCAGCCTGGTCCCCTCTACATGCT
ATCGATCCCGCTACCGGTACTGCTACCACAACCCTCAGTCCGACTAGGGCTTACACATGGAATGA
ACTCCATATACCTAAGCCAACCCACGAAAAGAACGTACAGAC
Found at i:25445314 original size:721 final size:721
Alignment explanation
Indices: 25443873--25445996 Score: 3385
Period size: 721 Copynumber: 2.9 Consensus size: 721
25443863 ATGCCGATGC
*
25443873 CATATTTCTACCATGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCT
1 CATATTTCTGCCATGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCT
* *
25443938 TCATGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
66 TCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
25444003 GTTCGAGATTTTTTTAAATTTTTTTAGAAAGAGTTTTGTCACCAAATTTGGTAGAGGTGATCCTT
131 GTTCGAGATTTTTTTAAATTTTTTTAGAAAGAGTTTTGTCACCAAATTTGGTAGAGGTGATCCTT
* *
25444068 GTATTGTTTTTGGCATGCATAAAAAAATGCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACC
196 GTATTTTTTTTGGCATGCAAAAAAAAATGCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACC
*
25444133 GTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAACTATAAAATCTC
261 GTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
* *
25444198 AAATGCTCTTTAAGGGGGTTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGG
326 AAATGCTCTTTAAGGGGG-TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
** * ** * *
25444263 CCAAGTACCAGCACCCATAACACATCATGTACGCACCCCCTGGCCCCCCCAATCGTCGAAACCTC
390 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGACCCCCCAATCGTCGAAACCCC
* * *
25444328 TAATGCCGCCA-GTTAGGCTCTCCGACGATGCTCCAGCGATGGTGCCCTGGGCAAAAAAAATGCG
455 CAATGCCG-CAGGTTAGGCTCTCCGGCGATGCTCCAGCGATGGTGCCCCGGGCAAAAAAAATGCG
* *
25444392 GCACCAGCACATGCCCGAGCCCAGCTTGTGCACCGTGGCTCAAAATCTTAGATTGGGAATGACCT
519 GCACCAGCACATGCCTGAGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGATTGGGAATGACCT
* * *
25444457 TCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAATGAGTGTGCGGGC
584 TCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGC
* * *
25444522 ACTCAACCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCTAACGGGTGGTAGGTGGCTTCAAT
649 ACTCAACCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGAACGGGTGGTAGGTGGCTTCAAG
25444587 CACATCTT
714 CACATCTT
* *
25444595 CATATTTCTGCCATCCCGATGTCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCT
1 CATATTTCTGCCATGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCT
*
25444660 TCATGTGAAGTTTCGTGGCAAGATGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
66 TCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
* * *
25444725 GTTTGAGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCACAAAATTTGGTAGAGGTGATCCTT
131 GTTCGAGATTTTTTTAAATTTTTTTAGAAAGAGTTTTGTCACCAAATTTGGTAGAGGTGATCCTT
*
25444790 GTATTTTTTTTGGCATGCAAAAAAAAATGCAGCTAAAAAATCGAAGTGGAGAAGATTTTGTGACC
196 GTATTTTTTTTGGCATGCAAAAAAAAATGCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACC
*
25444855 TTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
261 GTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
25444920 AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
326 AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
*
25444985 CAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGACCCCCCAATCGTCGGAACCCCC
391 CAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGACCCCCCAATCGTCGAAACCCCC
** * *
25445050 AATGCCGTTGGTTAGGCTCTCCGGCGATGCACCAGCGATGGTGCCCCGGGCGAAAAAAATGCGGC
456 AATGCCGCAGGTTAGGCTCTCCGGCGATGCTCCAGCGATGGTGCCCCGGGCAAAAAAAATGCGGC
* *
25445115 ACGAGCACATGCCTGAGCCCAGCATGTGCACCGTGGCTCAAAATATTAGATTGGGAATGACC-TC
521 ACCAGCACATGCCTGAGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGATTGGGAATGACCTTC
25445179 TGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCA
586 -GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCA
* * *
25445244 CTCAACCGGTCGGAGAGGTAAAATGCGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGC
650 CTCAACCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGAACGGGTGGTAGGTGGCTTCAAGC
25445309 ACATCTT
715 ACATCTT
* ** *
25445316 CATATTTTTGCTGTGCCGATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCT
1 CATATTTCTGCCATGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCT
* * *
25445381 TCATGTGATGTTTCGTGGTAAGACGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACA
66 TCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
*
25445446 GTTCAAGATTTTTTTAAATTTTTTTAGAAAGAGTTTTGTCACCAAATTTGGTAGAGGTGAT-CTT
131 GTTCGAGATTTTTTTAAATTTTTTTAGAAAGAGTTTTGTCACCAAATTTGGTAGAGGTGATCCTT
** *
25445510 GTATTTTTTTTGGTGTGCACAAAAAAATGCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACC
196 GTATTTTTTTTGGCATGCAAAAAAAAATGCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACC
* * *
25445575 GTTTGAAAAAAGTATCCCCATTTCAGACACTATAATGGCTACTGGCAGCAAACCTATAAAATCTT
261 GTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
*
25445640 AAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-
326 AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
*
25445704 CAATGTACCAGCACCCATCGAACATCATGTGCGCACACCCCCCGACCCCTCCAATCGTCGAAACC
391 CAA-GTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCGACCCC-CCAATCGTCGAAACC
* *
25445769 CCCAATGCCGCAGGTTAGGCTCTCCGACGATGCTCTGACGATGCTCCAACGATGGTGCCCCAGGC
453 CCCAATGCCGCAGGTTAGGCTCT-C--C---G----G-CGATGCTCCAGCGATGGTGCCCCGGGC
* * *
25445834 AAAAAAAATGCGGCACCAGCACATG-CTCGAGCCCAGTATGTGCACCATGGCTTAAAATCTTAGA
507 AAAAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGA
* * * * *
25445898 TTAGGAATGAGCTTCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCGACCCACGAAA
571 TTGGGAATGACCTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAA
* * * *
25445963 CGAGCGTACAGGCACTCAGCCGATCAGAGAGGCA
636 CGAGCGTGCGGGCACTCAACCGATCGGAGAGGCA
25445997 GAAGAATAAG
Statistics
Matches: 1293, Mismatches: 91, Indels: 25
0.92 0.06 0.02
Matches are distributed among these distances:
719 3 0.00
720 221 0.17
721 533 0.41
722 364 0.28
723 1 0.00
725 1 0.00
728 1 0.00
732 3 0.00
733 164 0.13
734 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (721 bp):
CATATTTCTGCCATGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCT
TCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
GTTCGAGATTTTTTTAAATTTTTTTAGAAAGAGTTTTGTCACCAAATTTGGTAGAGGTGATCCTT
GTATTTTTTTTGGCATGCAAAAAAAAATGCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACC
GTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGACCCCCCAATCGTCGAAACCCCC
AATGCCGCAGGTTAGGCTCTCCGGCGATGCTCCAGCGATGGTGCCCCGGGCAAAAAAAATGCGGC
ACCAGCACATGCCTGAGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGATTGGGAATGACCTTC
GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCAC
TCAACCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGAACGGGTGGTAGGTGGCTTCAAGCA
CATCTT
Found at i:25446367 original size:158 final size:157
Alignment explanation
Indices: 25445917--25446417 Score: 505
Period size: 158 Copynumber: 3.2 Consensus size: 157
25445907 AGCTTCATAT
* *
25445917 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCGACCCACGAAACGAGCGTACAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAC-GGCGCTCAG
* * * * *
25445982 CCGATCAGAGAGGCAGAA-GAATAAGCTGGGGATCGACCCAGTCCCCCCCTGTGTGCTGTCGATC
65 CCGATCAGAGAGGCAGAATGCACAAGCCGAGGATCG-CCCGGT-CCCCCCTGTGTGCTGTCGATC
* * *
25446046 CTGCTGCCACAACCCTCGG-TCTGGTTTGA
128 CTACTGCCACAACCCTCGGTTCTGGCTGGA
* * * * * * *
25446075 TCTTAGA-TTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAATGAGCGTGCGGCGCTGAG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGCGCTCAG
* * * * * * * ** * *
25446139 CCGA-CCGAAAAGGCATAATGCACAAGCCGAGAATCGGCCGATCCCCTTCTACGTGCTGCCGGTC
65 CCGATCAG-AGAGGCAGAATGCACAAGCCGAGGATCGCCCGGTCCCC-CCTGTGTGCTGTCGATC
* *
25446203 CCACTGCCACAACCCTCGGTTC-GGCTGGG
128 CTACTGCCACAACCCTCGGTTCTGGCTGGA
* * * * *
25446232 GCTTAAACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAC-GGCGCTCAG
*
25446297 CCGATCTGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGGTCCCCCCTGTGTGCTGTCGATCC
65 CCGATCAGAGAGGCAGAATGCACAAGCCGAGGATC-GCCCGGTCCCCCCTGTGTGCTGTCGATCC
*
25446362 TACTG-CAGTAACCCTCGG-TCTGGTCT-GA
129 TACTGCCA-CAACCCTCGGTTCTGG-CTGGA
* *
25446390 TCTTAGACAGGGAATGAACTCCGTATGC
1 GCTTAGACATGGAATGAACTCCGTATGC
25446418 TTAGCCTAGG
Statistics
Matches: 270, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
156 6 0.02
157 102 0.38
158 149 0.55
159 13 0.05
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGCGCTCAGC
CGATCAGAGAGGCAGAATGCACAAGCCGAGGATCGCCCGGTCCCCCCTGTGTGCTGTCGATCCTA
CTGCCACAACCCTCGGTTCTGGCTGGA
Found at i:25448908 original size:26 final size:26
Alignment explanation
Indices: 25448872--25448924 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25448862 CCGGTTCGAT
* *
25448872 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
25448898 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
25448924 C
1 C
25448925 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:25449585 original size:184 final size:184
Alignment explanation
Indices: 25449226--25449672 Score: 520
Period size: 184 Copynumber: 2.4 Consensus size: 184
25449216 TCGGTCTGAT
* * * * *
25449226 CTTAGACTGGGAATGAACTCCGTATGCATAAGTTAACCCACGAAACGAGCGTGCGGTTGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG-CGCTCAGC
* * * * * * * * **
25449291 TGATCGAAGAGGCATAATGCGCAAGCCAAGGATTAGCCCGGTCTTCCTCTACGTGCTGCTGATCC
65 CGATCGGAGAGGCAAAATGCACAAGCCAAGGATGAGCCCAGTCTCCCTCTACATGCTGCCAATCC
* * *
25449356 TACTACCACGACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCCATAAG
130 TACTACCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATAAG
* *
25449411 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTGCAGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGC
* * *
25449476 CGATCGGAGAGTCAAAATGCACAAGCCGAGGATCGA-CCCAGTCTCCCT-TGCATGCTGCCAATC
65 CGATCGGAGAGGCAAAATGCACAAGCCAAGGAT-GAGCCCAGTCTCCCTCTACATGCTGCCAATC
* **** * *
25449539 CTGCTGTTGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
129 CTACTACCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATAAG
* * * * *
25449595 CTTAGATTGTGGATGAACTCCGTATGCCTAAGTCAACCCCCGAAACGAGCATGCGGGCGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGC
*
25449660 CGGTCGGAGAGGC
65 CGATCGGAGAGGC
25449673 CAACCGGAGA
Statistics
Matches: 220, Mismatches: 40, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
184 125 0.57
185 92 0.42
186 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (184 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGCGCTCAGCC
GATCGGAGAGGCAAAATGCACAAGCCAAGGATGAGCCCAGTCTCCCTCTACATGCTGCCAATCCT
ACTACCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATAAG
Found at i:25449598 original size:26 final size:26
Alignment explanation
Indices: 25449569--25449621 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25449559 CCGATCTGAT
25449569 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGTGG-ATGAACTCCGTATG
*
25449595 CTTAGATTGTGGATGAACTCCGTATG
1 CTTAGACTGTGGATGAACTCCGTATG
25449621 C
1 C
25449622 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGTGGATGAACTCCGTATG
Found at i:25449969 original size:26 final size:26
Alignment explanation
Indices: 25449940--25449992 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25449930 TCGATCCGAT
25449940 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25449966 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25449992 C
1 C
25449993 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25450337 original size:26 final size:26
Alignment explanation
Indices: 25450308--25450360 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25450298 CCGGTCAGAT
*
25450308 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
25450334 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
25450360 C
1 C
25450361 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:25450382 original size:368 final size:364
Alignment explanation
Indices: 25449432--25450752 Score: 1403
Period size: 368 Copynumber: 3.6 Consensus size: 364
25449422 GATGAACTCT
* * * * * *
25449432 GTATGCCTAAGTCAACCCACGAAACGAACGTGCAGGCGCTCAGCCGA-TCGGAGAGTCAAAATGC
1 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACT-GGAGAGGCAGAATG-
* * * * * *
25449496 ACAAGCC-GAGGATCGAC-CCAGTCTCC-CTTGCATGCTGCCAATCCTGCTGTTGCAACCCTCGA
64 GCAAGCCAG-GGATCGGCACGA-TC-CCTCCT-CATGCTGCCAATCCTGCTATCGCAACCCTCGA
* *
25449558 TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGTGGATGAACTCCGTATGCC
125 TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
* * * *
25449623 TAAGTCAACCCCCGAAACGAGCATGCGGGCGCTCAGTCGGTCGGAGAGGCCAACCGGAGAGGCAT
190 TAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGTCGATCGGAGAGGCCAATC-GAGAGGCAT
** * * * * * *
25449688 AATGTGCAAGT-GAGGGATCAACCCGGTCCTCCTCTGTGTGCTGTCGATCCCACT-ACTGGTCCT
254 AATGCACAAGTCGA-GGATC-AGCTGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGAC-GGTCCT
* *
25449751 GCTACCACAACCCTCGGTCCTG-CTAGGGCATAGACGTGGAATGTACTTC
316 GCTACCACAACCCTCGGTCC-GACTGGGGCTTAGACGTGGAATGTACTTC
* * *
25449800 GTAT-CCTAAGCTAACCCACGAAACGAGCGTTCGGGCGCTCAGCCGACTGGAGAGGCAGAATGCG
1 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAGAGGCAGAATG-G
* ** * * * * *
25449864 CAAGTCAGGGATCGGCTTGGTCCC-CACTGCGTGCTGCCGATCCTACTATCGCAACCCTTGATTG
65 CAAGCCAGGGATCGGCACGATCCCTC-CT-CATGCTGCCAATCCTGCTATCGCAACCC----TCG
* *
25449928 ATTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGC
124 ATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGC
* * ** * ***
25449993 CTAAGTCAACCCATGAAACGAGCATGTGGGTGCTCAACCGACCGGAGAGGTTGATCAGAGAGGCA
189 CTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGTCGATCGGAGAGGCCAATC-GAGAGGCA
* * * *
25450058 TAATGCACAAGTCGAGGATCAGTCTGGTCCCCCCCTGCGTGCTGCCAATCCCGCTGTCGGTCCTA
253 TAATGCACAAGTCGAGGATCAG-CTGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGACGGTCCTG
* * *
25450123 CTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTTC
317 CTACCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTTC
* * *
25450171 GTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGACTAGAGAGGTAGAATGTG
1 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAGAGGCAGAATG-G
* * * *
25450236 CAAGCCATGGATTGGCCCGATCCCTCCTACATGTTGCCAATCCTGCTATCGCAACCCTCGATCCG
65 CAAGCCAGGGATCGGCACGATCCCTCCT-CATGCTGCCAATCCTGCTATCGCAACCCTCGATCCG
* * * *
25450301 GTCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCTGTATGCCTAAG
129 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
* * * *
25450366 TCAACCCACAAAACGAGCGTGCGGGTGCTCAGTCGATCAGAAAGGCCAATCGAAGAGGCATAATG
194 TCAACCCACGAAACGAGCATGCGGGTGCTCAGTCGATCGGAGAGGCCAATCG-AGAGGCATAATG
* * ** * * * *
25450431 CACAAGTCGGGGATAAGCTCGGTCCCCCTCAACTTGCTACCGATCTCGCTGCCGGTCCTGCTACC
258 CACAAGTCGAGGATCAGCT-GGTCCCCCTCTGCGTGCTGCCGATCCCGCTGACGGTCCTGCTACC
* * *
25450496 ACAACCCTCAGTCCGACTGGGGCTTAGATGTGGAATGTACTTT
322 ACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTTC
* * ** * *
25450539 TTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGTTGGCCGGAGAGGCAGAATGGC
1 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAGAGGCAGAATGGC
* * * * * * **
25450604 AAGCCGGGGATCGACACGATCCCCTCCGT-GTGCTGTCGATCCTGCTATCACAACCCTCGATTAG
66 AAGCCAGGGATCGGCACGAT-CCCTCC-TCATGCTGCCAATCCTGCTATCGCAACCCTCGATCCG
* *
25450668 -TCTGATCTTAGACTAGGAATGGACTCCG-ATGCTTAGACTGGGGATGAAC-CTCGTATGCCTAA
129 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTC-CGTATGCCTAA
*
25450730 GTCAAACCACGAAACG-G-ATGCGG
193 GTCAACCCACGAAACGAGCATGCGG
25450753 CATGTCACCC
Statistics
Matches: 798, Mismatches: 136, Indels: 43
0.82 0.14 0.04
Matches are distributed among these distances:
363 5 0.01
364 2 0.00
365 44 0.06
366 28 0.04
367 137 0.17
368 272 0.34
369 1 0.00
370 2 0.00
371 206 0.26
372 100 0.13
373 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (364 bp):
GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAGAGGCAGAATGGC
AAGCCAGGGATCGGCACGATCCCTCCTCATGCTGCCAATCCTGCTATCGCAACCCTCGATCCGAT
CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCATGCGGGTGCTCAGTCGATCGGAGAGGCCAATCGAGAGGCATAATGCAC
AAGTCGAGGATCAGCTGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGACGGTCCTGCTACCACAA
CCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTTC
Found at i:25451910 original size:26 final size:26
Alignment explanation
Indices: 25451881--25451933 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25451871 TCGATCCGAT
25451881 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25451907 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25451933 C
1 C
25451934 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25454995 original size:26 final size:26
Alignment explanation
Indices: 25454959--25455011 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25454949 GTTGACTTAG
25454959 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
25454985 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
25455011 G
1 G
25455012 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:25456369 original size:26 final size:26
Alignment explanation
Indices: 25456339--25456391 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25456329 GTTGACTTAG
*
25456339 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
25456365 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
25456391 G
1 G
25456392 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:25456881 original size:367 final size:364
Alignment explanation
Indices: 25455934--25456936 Score: 1074
Period size: 367 Copynumber: 2.7 Consensus size: 364
25455924 CTCTGGTCAT
* *
25455934 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGCCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * *
25455999 ATACAGAGTTCATTCCTAGTCTAAGATCGGATCGAATTGAAGGTTGCGGCAGCAGGATCGGTAGA
66 ATACAGAGTTCATTCCTAGTCTAAGATCGGATCGAATCGAAGGTTGCGGTAGCAGGATCGGTAGC
* * * * * * * * *
25456064 ACACAGGGGGGATCGGGCTGATCCCTGGCTTGCGTATTCTACCTCTTCGGCCGGCTAAG-AGCCT
131 ACGCAGGGGGGACCGGACCGATCCCTGGC-T-CGCATTCTACCTCTCCGGACAGCTGAGCA-CCT
* *** *
25456128 GCACGCTCGTTTCGACAGTTGGCTAAGAGCATACGGAGTACATTCCACATCTAAGCCCCAGCTAG
193 GTACGCTCGTTTCGTGGGTTGGCT-AG-GCATACGGAGTACATTCCACATCTAAGCCCCAGCGAG
* * * * **
25456193 ACCGAGGGTTGTGGCAGCGAGACCGGTAGCGGGATCGACAACACATAGAGGGGATCGGTTTGATC
256 ACCGAGGGTTGTGGCAGAGAGACCGGTAGCGGGATCAACAACACACAGAGGGGACCGGGCTGATC
* * * * * * *
25456258 CTCGGTTGGTGCATTATGCCTCTCCAATCGGCCTTTTCGACTGG
321 CTCGGTTGATGCATTATGCCTCTCCAACCGACCTCTCCGACCGA
*
25456302 CTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * *
25456367 ATACAGAGTTCATTCCTAGTCTAAGATCGGATTGGATCGAAGGTTGCGGTAACAGGATCGGTAGC
66 ATACAGAGTTCATTCCTAGTCTAAGATCGGATCGAATCGAAGGTTGCGGTAGCAGGATCGGTAGC
* * * * * * * **
25456432 ATGCAGGGGGGACCAGACCGATCCCCGGCTTGCGAGTCTACCTCTCC-GACTGACTGAGCGCCCA
131 ACGCAGGGGGGACCGGACCGATCCCTGGCTCGC-ATTCTACCTCTCCGGACAG-CTGAGCACCTG
* ** * * *
25456496 TACGCTCGTGTCGTGGGTTGGCATAGGTGTACGGAGTACATTCCACGTTTAAGCCCCTGTCGA-A
194 TACGCTCGTTTCGTGGGTTGGC-TAGGCATACGGAGTACATTCCACATCTAAGCCCCAG-CGAGA
* *
25456560 CCGAGGGTTGTGGCAGTAG-GTCCGGTAGCGTGG-TCAACAGCACACAGAGGGAGACCGGGCTGA
257 CCGAGGGTTGTGGCAG-AGAGACCGGTAGCG-GGATCAACAACACACAGAGGG-GACCGGGCTGA
***
25456623 TCC-CTGGCTT-ATGCATTATGCCTCTCTGGCCGACCTCTCCGACCGA
319 TCCTC-GG-TTGATGCATTATGCCTCTCCAACCGACCTCTCCGACCGA
* * *
25456669 CTGAGCGCCCGTATGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * * * **
25456734 ATAC-GAAGTTAATTCATAGTCTAAGATCAGACCGAATCGAGGGTTGTGGTAGCAGGATCGACAG
66 ATACAG-AGTTCATTCCTAGTCTAAGATCGGATCGAATCGAAGGTTGCGGTAGCAGGATCGGTAG
* * *
25456798 CACGCAGGGGGGACCGGACCGATCCCTGACTACGCATTCTGCCTCTCCGGTCAGCTGAGCACCTG
130 CACGCAGGGGGGACCGGACCGATCCCTGGCT-CGCATTCTACCTCTCCGGACAGCTGAGCACCTG
* * ** *
25456863 TACG-TCCCTTTTGTGGGTTGGCTTAGGCATA-GTGAGCT-CATTCCATGTCTAAGCCCCAGCTA
194 TACGCT-CGTTTCGTGGGTTGGC-TAGGCATACG-GAG-TACATTCCACATCTAAGCCCCAGCGA
25456925 GACCGAGGGTTG
255 GACCGAGGGTTG
25456937 CAGGAGTGAG
Statistics
Matches: 526, Mismatches: 92, Indels: 35
0.81 0.14 0.05
Matches are distributed among these distances:
366 80 0.15
367 294 0.56
368 152 0.29
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (364 bp):
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACAGAGTTCATTCCTAGTCTAAGATCGGATCGAATCGAAGGTTGCGGTAGCAGGATCGGTAGC
ACGCAGGGGGGACCGGACCGATCCCTGGCTCGCATTCTACCTCTCCGGACAGCTGAGCACCTGTA
CGCTCGTTTCGTGGGTTGGCTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGCGAGACCGA
GGGTTGTGGCAGAGAGACCGGTAGCGGGATCAACAACACACAGAGGGGACCGGGCTGATCCTCGG
TTGATGCATTATGCCTCTCCAACCGACCTCTCCGACCGA
Found at i:25459010 original size:26 final size:26
Alignment explanation
Indices: 25458974--25459026 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25458964 GTTGACTTAG
25458974 GTATACAGAGTTCATCCCCAATCTAA
1 GTATACAGAGTTCATCCCCAATCTAA
* *
25459000 GTATACAGAGTTCATTCCCAGTCTAA
1 GTATACAGAGTTCATCCCCAATCTAA
25459026 G
1 G
25459027 ATTAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GTATACAGAGTTCATCCCCAATCTAA
Found at i:25459377 original size:26 final size:26
Alignment explanation
Indices: 25459341--25459393 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25459331 GTTGACTTAG
*
25459341 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
25459367 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
25459393 G
1 G
25459394 ATCAGACCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:25459616 original size:367 final size:367
Alignment explanation
Indices: 25458938--25460637 Score: 1729
Period size: 368 Copynumber: 4.7 Consensus size: 367
25458928 TCTGGTCGGT
* * * * *
25458938 TGAGCGCCCGCACGCTCGTTTCCTGGGTTGACTTAGGTATACAGAGTTCATCCCCAATCTAAGTA
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* ** *
25459003 TACAGAGTTCATTCCCAGTCTAAGATTAAACCAGATCGAGGGTTGCGGTAGCAGGA-TCAGCAGC
66 TACGGAGTTCATTCCCAGTCTAAGA-TCGACCAGATCGAGGGTTGCGGTAGCAGGATTGA-CAGC
* * * * * * *
25459067 ACGCAGGGGGGACCGGGCTGATCCTCGGCTTACGCATTCTGCCTCTCCGTCCGACTGAGCACCCG
129 ACGTAGGGGGGACCGAGCCGATCCTAGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCG
* * ** * * * *
25459132 CACGTTCATTTTATGGGTTGGCTTAGGCATACGAAGTACATTCTACGTCTAAGCCCCCGTCGTAC
194 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCTGTCGGAC
* * ** * * * *
25459197 CGAGGGTTGTGGCAACAGGACCGGCAGTAGGATCGACAGCACGTAAAGGGGGAACAAGCTGATCC
259 CGAGGGTTGTGGCAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGATCGAGCTGATCC
*
25459262 CCGGCTTG-GCATTATACCTCTCCGACCGACCTCTCCAGCCGGC
324 CCGGCTTGCGCATTATGCCTCTCCGACCGACCTCTCCAGCCGGC
* * *
25459305 TAAGTGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * * * *
25459370 TATGGAGTTCATTCCCAATCTAAGATCAGACCTGATCGAGGGTTGCGGTAGCTGGATTGATAGCA
66 TACGGAGTTCATTCCCAGTCTAAGATC-GACCAGATCGAGGGTTGCGGTAGCAGGATTGACAGCA
* * * * * * * *
25459435 CGTAGGGGGGATCGAGCCGATCTTAGGCTGGCACATTCTTCCTCTCCGACTGACAGAGCGCCCGC
130 CGTAGGGGGGACCGAGCCGATCCTAGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGC
*
25459500 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCTGTCAGACC
195 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCTGTCGGACC
* * * * *
25459565 AAGGGTTGTGGCTGCAAGACCGGTAACGGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCC
260 GAGGGTTGTGGCAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGATCGAGCTGATCCC
* * * * * *
25459630 CAGCTTGCGCATTATGCCTCTCCGACCAACCTCTTC-GATCAGA
325 CGGCTTGCGCATTATGCCTCTCCGACCGACCTCTCCAG-CCGGC
* * * * *
25459673 TGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTTACCG
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * * *
25459738 TACAGAGTTCATTCCCAGTCTAAGATCGAATCAGATCGAGGGTTGCAGTAGCAGGA-TCAGCAGC
66 TACGGAGTTCATTCCCAGTCTAAGATCG-ACCAGATCGAGGGTTGCGGTAGCAGGATTGA-CAGC
** * * * *
25459802 ACACAGGGGGGACCGAGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCC
129 ACGTAGGGGGGACCGAGCCGAT-CCTAGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCC
* * * * * *
25459866 GTACGCTCGTTTCGTAGGTTGGCTTAGGAATTCAGAGTACATTCCACGTCTAAGCCCCAGTCGGA
193 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCTGTCGGA
* * * * * *
25459931 CCGAGGGTTGT--------GACCGCCAGCGGAATCAATC-GCACGCAGAGAGGGATCGGGCTAAT
258 CCGAGGGTTGTGGCAGCAAGACCGGCAGCGGGATCGA-CAGCACGCAGAGGGGGATCGAGCTGAT
* * * * * * *
25459987 CCCCAGG-TTGCGTATTATGCTTCTTCAATC-AGCCTCTCCTGCCGGT
322 CCCC-GGCTTGCGCATTATGCCTCTCCGACCGA-CCTCTCCAGCCGGC
* * *
25460033 TGAGCGCCTCGTACGCTCGTTTCATGGGTTAACTTAAGCATACGGAGTTCATCCCCAGTCTAAGC
1 TGAGCGCC-CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * *
25460098 ATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGTAGCAGGATCGATAGC
65 ATACGGAGTTCATTCCCAGTCTAAGATCG-ACCAGATCGAGGGTTGCGGTAGCAGGATTGACAGC
* * * * * *
25460163 ACGTAGGAGGGACCGAG-CGATCCCCA-ACTTGCTCATTCTACCTCTCCGACCGACTAAGCAACC
129 ACGTAGGGGGGACCGAGCCGAT-CCTAGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCC
* * * * *
25460226 GCACGCTCATTTCGTGGGTTGGCTTTGGCATACGGAGTACATTCCATGTGTAAG-CCCTAGCCGG
193 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCT-GTCGG
* * ** * *
25460290 ACTGAGGGTTGTGGCAGCAAGACCGACAGCGGGATCGGTAGCATGCAGAGGGGGATCGAGTTGAT
257 ACCGAGGGTTGTGGCAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGATCGAGCTGAT
*
25460355 CCCCGGCTTGCGTATTATGCCTCTCCG---G----CT--A----GC
322 CCCCGGCTTGCGCATTATGCCTCTCCGACCGACCTCTCCAGCCGGC
* * * * *
25460388 TGAGCGCCTGCACGCTTGTTTCATGAGTTGACTTAGGCATACGAAGTTTATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * * * * *
25460453 TATGGAGTTCATTCTCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATTGACAACA
66 TACGGAGTTCATTCCCAGTCTAAGA-TCGACCAGATCGAGGGTTGCGGTAGCAGGATTGACAGCA
** * ** * * * *
25460518 CGTAAAGGGGACCAAGCCGATCCCCGGCTTACGCATTCTACCTATCTGGA-AGACTGAGCACCCG
130 CGTAGGGGGGACCGAGCCGATCCTAGGCTTGCGCATTCTACCTCTC-CGACCGACTGAGCACCCG
* ** *
25460582 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCC
194 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCC
25460638 AATCCGATCG
Statistics
Matches: 1099, Mismatches: 203, Indels: 73
0.80 0.15 0.05
Matches are distributed among these distances:
354 116 0.11
355 89 0.08
356 4 0.00
359 4 0.00
360 169 0.15
361 125 0.11
362 1 0.00
366 1 0.00
367 279 0.25
368 309 0.28
369 2 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (367 bp):
TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCGACCAGATCGAGGGTTGCGGTAGCAGGATTGACAGCAC
GTAGGGGGGACCGAGCCGATCCTAGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCGCA
CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCTGTCGGACCG
AGGGTTGTGGCAGCAAGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGATCGAGCTGATCCCC
GGCTTGCGCATTATGCCTCTCCGACCGACCTCTCCAGCCGGC
Found at i:25460097 original size:26 final size:26
Alignment explanation
Indices: 25460067--25460122 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
25460057 TGGGTTAACT
25460067 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
25460093 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
25460119 TAAG
1 TAAG
25460123 ATCGAATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:25462023 original size:26 final size:26
Alignment explanation
Indices: 25461993--25462045 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25461983 GTTGACTTAG
*
25461993 GCATACGGCGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
25462019 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
25462045 G
1 G
25462046 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:25462274 original size:26 final size:26
Alignment explanation
Indices: 25462238--25462290 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25462228 ACTGAGATCG
25462238 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
25462264 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
25462290 G
1 G
25462291 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:25462913 original size:159 final size:159
Alignment explanation
Indices: 25462542--25463095 Score: 407
Period size: 159 Copynumber: 3.5 Consensus size: 159
25462532 TACGCATTAT
* * * * * * *
25462542 GCCTC-TCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCATAGGTTGACTTAGGCACACGGAGTTC
1 GCCTCTTC-GGCCGACTCAGCGCCCGCACGCTCGTTTAATGGGTTGGCTTAGGCATACGGAGTTC
* * * * * * *
25462606 ATCCCCA-GTCTAAG-ATCGGA-CTGGA-CTGAGGGTTGTGGCAGCAGGATCGACAGCACGCA-G
65 AT-TCCATGTCTAAGCACCAGATC-GGATC-AAGGGTTGCGGCAGCAGGATCGATAGCACACAGG
* * **
25462666 GGGGACCT-GGTCGATCCCCGGCTTGCACATTCTA
127 GGGGA-CTGGGCCGATCCCCAGCTTGCGTATTC-A
* * * * * * * * * * * * *
25462700 -CCACTCCGGTCGGCTGAGCACCCGAACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGCTCA
1 GCCTCTTCGGCCGACTCAGCGCCCGCACGCTCGTTTAATGGGTTGGCTTAGGCATACGGAGTTCA
* * * *
25462764 TTCCATGTCTAAGCCCCAG-TCGGA-CAAAGGGTTGTGGCAGC-GAGATCGGTAGCACGCAGAGG
66 TTCCATGTCTAAGCACCAGATCGGATC-AAGGGTTGCGGCAGCAG-GATCGATAGCACACAG-GG
* *
25462826 GGGACTGGGCCGATCCTCGGCTTGCGTATT-A
128 GGGACTGGGCCGATCCCCAGCTTGCGTATTCA
* * * * * *
25462857 TGCCTTTTCGGCCGGCTCAGTGCCCGTACGCTCGTTTAATGGGTTGACTTATGCATACGGAGTTC
1 -GCCTCTTCGGCCGACTCAGCGCCCGCACGCTCGTTTAATGGGTTGGCTTAGGCATACGGAGTTC
* * * * *
25462922 ATTCCCA-GTATAAG-ATCAGATCGGATCGAGGGTTGCGGCATCAGGATCGATAGCACATAGGGG
65 ATT-CCATGTCTAAGCACCAGATCGGATCAAGGGTTGCGGCAGCAGGATCGATAGCACACAGGGG
* * *
25462985 GGACTGGGTCGATCCCCAGTTTGTGTATTCA
129 GGACTGGGCCGATCCCCAGCTTGCGTATTCA
* * *
25463016 GCCTCTTCGGCCGACTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA
1 GCCTCTTCGGCCGACTCAGCGCCCGCACGCTCGTTTAATGGGTTGGCTTAGGCATACGGAGTTCA
**
25463081 TTCGTTGTCTAAGCA
66 TTCCATGTCTAAGCA
25463096 TACGGAGCTC
Statistics
Matches: 311, Mismatches: 68, Indels: 33
0.75 0.17 0.08
Matches are distributed among these distances:
156 4 0.01
157 89 0.29
158 100 0.32
159 113 0.36
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
GCCTCTTCGGCCGACTCAGCGCCCGCACGCTCGTTTAATGGGTTGGCTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCACCAGATCGGATCAAGGGTTGCGGCAGCAGGATCGATAGCACACAGGGGGG
ACTGGGCCGATCCCCAGCTTGCGTATTCA
Found at i:25463840 original size:26 final size:26
Alignment explanation
Indices: 25463804--25463856 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25463794 GTTAACTTAG
25463804 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
25463830 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATCCCCAATCTAA
25463856 G
1 G
25463857 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:25464329 original size:158 final size:158
Alignment explanation
Indices: 25463830--25464332 Score: 439
Period size: 158 Copynumber: 3.2 Consensus size: 158
25463820 CCCAATCTAA
* * *
25463830 GCATACGGAGTTCATTCCCAAT-T-TAAGATCAGA-TCGGATCG-AGGGTTGCGGTAGCAGGATC
1 GCATACGGAGTTCATT-CC-ATGTCTAAG-CCCGACTCGGACCGAAGGGTTGCGGTAGCAGGATC
* * * * * * **
25463891 GACAGCACACAGAGGGGACCGGGCCAATCCCCAACGTGCGCATTCTGCCTTTTCGGCCGGCTGAG
63 GACAGCACACAAAGGGGACTGGG-CGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGAG
* * *
25463956 CACCCGCACGCTCGTTTCATGGGATAGCTTAG
127 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * **
25463988 GCATATGGAGTACATTCCATGTCTAAGCCCTAGTCGGACCGAA-GGTTGTGGCAGTGGGATCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCGACTCGGACCGAAGGGTTGCGGTAGCAGGATCGAC
* * * ** * * *
25464052 AGCACACAGAGGGGGA-TCGAGGCGATCCCTGGCTTGTACATTATGCCTCTTCAATCGGCTCAGC
66 AGCACACA-AAGGGGACT-G-GGCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGAGC
* * *
25464116 GCCTGCACGCTCGTTTCATGGGTTGACTTAT
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
25464147 GTATACGGAGTTCATTTTCA-GTCTAAGATCGGACT-GGACC-AAGGGTTGCGGTAGCAAGATCG
1 GCATACGGAGTTCA-TTCCATGTCTAAG-CCCGACTCGGACCGAAGGGTTGCGGTAGCAGGATCG
* * * * * *
25464209 ACAGCACGCAAAGGGGACTGGGTCGATCCCCGACTTACGCATTCTACCTCTCCGATCGACTGAAC
64 ACAGCACACAAAGGGGACTGGG-CGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGAGC
*
25464274 GCCCGCACGCTCATTTCATGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
25464305 GCATACAGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
25464333 ATACGGAGCT
Statistics
Matches: 265, Mismatches: 67, Indels: 27
0.74 0.19 0.08
Matches are distributed among these distances:
156 2 0.01
157 11 0.04
158 135 0.51
159 108 0.41
160 9 0.03
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCGACTCGGACCGAAGGGTTGCGGTAGCAGGATCGAC
AGCACACAAAGGGGACTGGGCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:25465204 original size:27 final size:26
Alignment explanation
Indices: 25465139--25465191 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25465129 GTTGACTTAG
*
25465139 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
25465165 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
25465191 G
1 G
25465192 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:25467139 original size:26 final size:26
Alignment explanation
Indices: 25467103--25467155 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25467093 GTTGACTTAG
25467103 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
25467129 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
25467155 G
1 G
25467156 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:25468348 original size:26 final size:26
Alignment explanation
Indices: 25468300--25468352 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25468290 GTTGACTTAG
*
25468300 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTCCATCCCCAGTCTAA
* * *
25468326 GCATACGGAGTCCATTCCTAGTCTAA
1 GCATACGAAGTCCATCCCCAGTCTAA
25468352 G
1 G
25468353 ATCAGACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTCCATCCCCAGTCTAA
Found at i:25468696 original size:26 final size:26
Alignment explanation
Indices: 25468667--25468719 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25468657 GTTGACTTAG
*
25468667 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
25468693 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
25468719 G
1 G
25468720 ATCTGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:25468942 original size:367 final size:365
Alignment explanation
Indices: 25468273--25469590 Score: 1429
Period size: 367 Copynumber: 3.6 Consensus size: 365
25468263 CTGGGTGACT
25468273 GCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATCCCCAGTCTAAGCATACGGAGT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATCCCCAGTCTAAGCATACGGAGT
* * * ** * *
25468337 CCATTCCTAGTCTAAGATCAGACTAGATCGAGGGTTGTGATAGCAGGATCGACAGCA-CACGGAG
65 TCATTCCCAGTCTAAGATCTGACCGGATCGAGGGTTGCGATAGCAGGATCGGCAGCAGCA-GGA-
* * * * * *
25468401 GGGATCGTGTCGATCCCCGGCTTGCCATTCTGCCTCTCCGGCCAACTGAGCGCCTGCACGCTCGT
128 GGGATCGAGCCGATCCCTGGCTTGCCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGT
** * *
25468466 TTCATGGGTTGGCTTAGGCATAAAAAGTACATTCCACATCTAAGCCCCAGTCGGACTGAGGGTTG
193 TTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTG
* * * * **
25468531 TGGTAGCAGGACCGGCAGCGAGATCGGTAGCAAGTTGAGGGGGACCGAGCTTATCCCCGACTTGT
258 TGGTAGCAGGA-CGACAGCGGGATCGGCAGCACGCAGAGGGGGACCGAGCTTATCCCCGACTTGT
* *
25468596 GCATTATGCCTCTTCGATTGGCCTTTCTGATCGACTGAGCACCC
322 GCATTATGCCTCTTCGATTGGCCTCTCCGATCGACTGAGCACCC
* *
25468640 GCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTTATCCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * *
25468705 CATTCCCAGTCTAAGATCTGACCGGATCGAGGGTTGCGATAGCAGGATTGGGCAACATGTAGGAG
66 CATTCCCAGTCTAAGATCTGACCGGATCGAGGGTTGCGATAGCAGGA-TCGGCAGCA-GCAGGAG
* * * * ** * *
25468770 GGATCGGGCCAATCCATGGCTTGCACATTCTACCTCTCTAGTCGGCTGAGCGCCCGCACACTCGT
129 GGATCGAGCCGATCCCTGGCTTGC-CATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGT
* *
25468835 TTCATGGGTTGGCTTAGGCATACGAAGTACATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTA
193 TTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTG
* * * * *
25468900 TGGCAGTAGGACGACAGCGGGATTGGCAGCACGCAG-GGGGGACC-AGACTGATCCTCGACTTGT
258 TGGTAGCAGGACGACAGCGGGATCGGCAGCACGCAGAGGGGGACCGAG-CTTATCCCCGACTTGT
*** * **
25468963 GCATTATGCCTC-TCTGATCAACCTCTCCGGTCGGTTGAGCACCC
322 GCATTATGCCTCTTC-GATTGGCCTCTCCGATCGACTGAGCACCC
* * *
25469007 ACATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * * *
25469072 CATTCCCAGTCTAAGATCGGACCGAATCAAGGGTTGCGATAGTAGGATCGGCAGCACGCAGTGA-
66 CATTCCCAGTCTAAGATCTGACCGGATCGAGGGTTGCGATAGCAGGATCGGCAGCA-GCAG-GAG
* * * * *
25469136 GGACCAAGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGAACGCTCAT
129 GGATCGAGCCGATCCCTGGCTTGC-CATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGT
* * * *
25469201 TTCGTGGGTTAGCTTAGG-ATACGAAGTACATTCCACGTCTATGCCCTAG-CAGGACCGAGGGTT
193 TTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGTC-GGACCGAGGGTT
* * * * * * *
25469264 GTGGTAGCAGGACCAGTAGTGGGATCGACAGCACACAGAGGGGGACCG-GGTTGATCCCTGACTT
257 GTGGTAGCAGGACGA-CAGCGGGATCGGCAGCACGCAGAGGGGGACCGAGCTT-ATCCCCGACTT
** * * *
25469328 GCACATTATGCCTCTCCGGTTGGCCTCTCCGATCGACTGAGCGCCC
320 GTGCATTATGCCTCTTCGATTGGCCTCTCCGATCGACTGAGCACCC
* * * * ** *
25469374 GTATGCTCGTTTCGGGGGTTGACTTAGGCATACGGAGTTCATCCATAATCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * * *
25469439 CATTCCCAGTCTAAGAT-TGAACCGGATCGAGGGTTGCAACAGTAGGATTGGCAGCATGCA--AG
66 CATTCCCAGTCTAAGATCTG-ACCGGATCGAGGGTTGCGATAGCAGGATCGGCAGCA-GCAGGAG
* * * * * * ** * * * *
25469501 GGAGACTGGGTCGAT-CCTCGGCTTGTGCATTTTGACTCTCCGACCGGCTGAACGCTCACACGCT
129 GGA-TC-GAGCCGATCCCT-GGCTTG-CCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCT
*
25469565 CGTTTCATGGGTTGACTTAGGCATAC
190 CGTTTCATGGGTTGGCTTAGGCATAC
25469591 AGAGTTCATC
Statistics
Matches: 790, Mismatches: 140, Indels: 41
0.81 0.14 0.04
Matches are distributed among these distances:
364 2 0.00
365 54 0.07
366 104 0.13
367 476 0.60
368 50 0.06
369 103 0.13
370 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (365 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCTGACCGGATCGAGGGTTGCGATAGCAGGATCGGCAGCAGCAGGAGGG
ATCGAGCCGATCCCTGGCTTGCCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTC
ATGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGG
TAGCAGGACGACAGCGGGATCGGCAGCACGCAGAGGGGGACCGAGCTTATCCCCGACTTGTGCAT
TATGCCTCTTCGATTGGCCTCTCCGATCGACTGAGCACCC
Found at i:25469064 original size:26 final size:26
Alignment explanation
Indices: 25469034--25469086 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25469024 GTTGACTTAG
25469034 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
25469060 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
25469086 G
1 G
25469087 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:25469953 original size:158 final size:159
Alignment explanation
Indices: 25469617--25470113 Score: 524
Period size: 159 Copynumber: 3.1 Consensus size: 159
25469607 CTAAGCTTAT
* * *
25469617 GGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTCGTGGCAGTAGGATCAGCAGCACGT
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGTGGCAGTAGGATCAGCAGCACGT
* * * ** * * * *
25469682 AGAGGAGGA-CCGGGCTAATCCTTGGCTTGCGCATTATGCCTTTTCGATCGGCTCAGCACCCGCA
66 AGAGGGGGATCAGGTC-AATCCCCGACTTGCGCATTATGCCTCTACGATCGGCTGAGCACCCGCA
* * *
25469746 TGCTCGTTTCGTGGGTTAACTTATGCATAC
130 CGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
25469776 GGAGTTCATTCCCAGTCTAAGATCAGACCGAATAGAGGGTTATGGTAGTAGGATCAACAGCACGT
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGTGGCAGTAGGATCAGCAGCACGT
* * * * * *
25469841 AG-GGGGGATCAGGTCGATCCCCGACTTGCTCATTCTGCCTCTCCGATCGGGTGAGCCCCCGCAC
66 AGAGGGGGATCAGGTCAATCCCCGACTTGCGCATTATGCCTCTACGATCGGCTGAGCACCCGCAC
* *
25469905 GCTCATTTCGTGGGTTGGCTTAGGCATAC
131 GCTCGTTTCGTGGGTTGACTTAGGCATAC
* ** * *
25469934 GGAGTACATTCCACA-TCTAAGGCCCAG-CCTG-ATCGAGGGTTGTGGCAGCAGGATCGGCAGCA
1 GGAGTTCATTCC-CAGTCTAA-GATCAGACC-GAATCGAGGGTTGTGGCAGTAGGATCAGCAGCA
* * * **
25469996 CGCAGAGGGGGATCGAGAT-AATCCCC-AGCTTGCGCATTATGCCTCTACGACCGGCTGAGTGCC
63 CGTAGAGGGGGATC-AGGTCAATCCCCGA-CTTGCGCATTATGCCTCTACGATCGGCTGAGCACC
* *
25470059 CACACGCTCGTTTCGTGAGTTGACTTAGGCATAC
126 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
25470093 GGAGTTCA-TCCCTAGTCTAAG
1 GGAGTTCATTCCC-AGTCTAAG
25470114 CATACGGAGT
Statistics
Matches: 279, Mismatches: 50, Indels: 19
0.80 0.14 0.05
Matches are distributed among these distances:
157 1 0.00
158 120 0.43
159 155 0.56
160 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGTGGCAGTAGGATCAGCAGCACGT
AGAGGGGGATCAGGTCAATCCCCGACTTGCGCATTATGCCTCTACGATCGGCTGAGCACCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATAC
Found at i:25470123 original size:26 final size:26
Alignment explanation
Indices: 25470087--25470139 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25470077 GTTGACTTAG
25470087 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
25470113 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
25470139 G
1 G
25470140 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:25470456 original size:184 final size:182
Alignment explanation
Indices: 25470266--25470850 Score: 438
Period size: 184 Copynumber: 3.2 Consensus size: 182
25470256 CCAGGGTCGG
*
25470266 CTTAGGCATACGGAGTACAT-TCCATGTCTAAGCCCCAGCCGAACCGAGAGTTGTGGCATCAGGA
1 CTTAGGCATACGGAGTACATCCCCA-GTCTAAGCCCCAGCCGAACCGAGAGTTGTGGCATCAGGA
*
25470330 TCAGTAGCAGGATCGATAGCATGCAAAGAGGGACTGGGTTGATCCCCGACTTGTGCATTATGCCT
65 TCAGTAGCAGGATCGATAGCA-GCAAAGGGGGACTGGG-TGATCCCCGACTTGTGCATTATGCCT
* *
25470395 CTCCGATCGGCCTCTCCGGCTGGCTGAGCACCAGCACGCTCGTTTCATGGGTTAA
128 CTCCGATCGGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGA
* * * ** * * * ** * *
25470450 CTTAGGCTTACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTC-ATTCCCAGTCTAAGATCG-A
1 CTTAGGCATACGGAGTACATCCCCAGTCTAAGC---CCCAG-CCGA-ACCGAGAGT-TG-TGGCA
* * * * * * * *
25470513 ACCGGATCGAAGGTTGC-GGTAGTCAGATTGGCAACACGTAGGGGGGACCAGAGG-GATCCTCGG
59 TCAGGATC--A-GTAGCAGG-A-TC-GA-TAGCAGCA---AAGGGGGA-CTG-GGTGATCC-CCG
* * * * * * *
25470576 A--T-TGC-GTAT---T-T----T--ACCTCTCCGACTAGCTGAGCGCCCGCATGCTCATTTCCA
111 ACTTGTGCATTATGCCTCTCCGATCGGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTT-CA
* *
25470627 -GGGTCGG
175 TGGGTTGA
*
25470634 CTTAGGCATACGGAGTACAT-TCCATGTCTAAGCCCCAGCCGAACCGAGAGTTGTGGCATCAGGA
1 CTTAGGCATACGGAGTACATCCCCA-GTCTAAGCCCCAGCCGAACCGAGAGTTGTGGCATCAGGA
*
25470698 TCAGTAGCAGGATCGATAGCACGCAGAGGGGGACTGGGATGATCCCCGACTTGTGCATTATGCCT
65 TCAGTAGCAGGATCGATAGCA-GCAAAGGGGGACTGGG-TGATCCCCGACTTGTGCATTATGCCT
*
25470763 CTCCGATCGGCCTCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGA
128 CTCCGATCGGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGA
* *
25470818 CTTAGGCTTACGGAGTTCATCCCCAGTCTAAGC
1 CTTAGGCATACGGAGTACATCCCCAGTCTAAGC
25470851 ATACGGAGTT
Statistics
Matches: 288, Mismatches: 68, Indels: 90
0.65 0.15 0.20
Matches are distributed among these distances:
169 2 0.01
170 5 0.02
171 11 0.04
172 1 0.00
173 7 0.02
174 7 0.02
175 2 0.01
176 5 0.02
177 4 0.01
178 3 0.01
179 8 0.03
180 6 0.02
181 4 0.01
182 1 0.00
183 5 0.02
184 143 0.50
185 8 0.03
186 1 0.00
187 4 0.01
188 6 0.02
189 8 0.03
190 3 0.01
191 4 0.01
192 5 0.02
193 2 0.01
194 7 0.02
195 7 0.02
196 1 0.00
197 11 0.04
198 5 0.02
199 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (182 bp):
CTTAGGCATACGGAGTACATCCCCAGTCTAAGCCCCAGCCGAACCGAGAGTTGTGGCATCAGGAT
CAGTAGCAGGATCGATAGCAGCAAAGGGGGACTGGGTGATCCCCGACTTGTGCATTATGCCTCTC
CGATCGGCCTCTCCGGCTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGA
Found at i:25470492 original size:26 final size:26
Alignment explanation
Indices: 25470458--25470507 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
25470448 AACTTAGGCT
25470458 TACGAAGTTCATCCCCAGTCTAAGCA
1 TACGAAGTTCATCCCCAGTCTAAGCA
* *
25470484 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATCCCCAGTCTAAG
25470508 ATCGAACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAGTCTAAGCA
Found at i:25470733 original size:368 final size:367
Alignment explanation
Indices: 25470061--25471406 Score: 1636
Period size: 368 Copynumber: 3.7 Consensus size: 367
25470051 TGAGTGCCCA
* * *
25470061 CACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* *
25470126 ATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCGGTAGTAAGATTGGCAACACGTAGGGGGG
66 ATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGTAGTCAGATTGGCAACACGTAGGGGGG
*
25470191 ACCAGAGGGATCCTCGGATTGCGTATTTTACCTCTCCGACCAGCTGAGCGCCAGCATGCTCATTT
131 ACCAGAGGGATCCTCGGATTGCGTATTTTACCTCTCCGA-CAGCTGAGCGCCCGCATGCTCATTT
25470256 CCAGGGTCGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGAACCGAGAGTTGTG
195 CCAGGGTCGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGAACCGAGAGTTGTG
* * * *
25470321 GCATCAGGATCAGTAGCAGGATCGATAGCATGCAAAGAGGGACTGGGTTGATCCCCGACTTGTGC
260 GCATCAGGATCAGTAGCAGGATCGATAGCACGCAGAGGGGGACTGGGATGATCCCCGACTTGTGC
*
25470386 ATTATGCCTCTCCGATCGGCCTCTCCGGCTGGCTGAGCACCAG
325 ATTATGCCTCTCCGATCGGCCTCTCCGGCTGGCTGAGCACCCG
* * *
25470429 CACGCTCGTTTCATGGGTTAACTTAGGCTTACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
*
25470494 ATTCCCAGTCTAAGATCGAACCGGATCGAAGGTTGCGGTAGTCAGATTGGCAACACGTAGGGGGG
66 ATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGTAGTCAGATTGGCAACACGTAGGGGGG
25470559 ACCAGAGGGATCCTCGGATTGCGTATTTTACCTCTCCGACTAGCTGAGCGCCCGCATGCTCATTT
131 ACCAGAGGGATCCTCGGATTGCGTATTTTACCTCTCCGAC-AGCTGAGCGCCCGCATGCTCATTT
25470624 CCAGGGTCGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGAACCGAGAGTTGTG
195 CCAGGGTCGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGAACCGAGAGTTGTG
25470689 GCATCAGGATCAGTAGCAGGATCGATAGCACGCAGAGGGGGACTGGGATGATCCCCGACTTGTGC
260 GCATCAGGATCAGTAGCAGGATCGATAGCACGCAGAGGGGGACTGGGATGATCCCCGACTTGTGC
*
25470754 ATTATGCCTCTCCGATCGGCCTCTCTGGCTGGCTGAGCACCCG
325 ATTATGCCTCTCCGATCGGCCTCTCCGGCTGGCTGAGCACCCG
*
25470797 CACGCTCGTTTCATGGGTTGACTTAGGCTTACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * * * ** * *
25470862 ATTCCCAGTCCAAGATTGGACCGGATCGAGGGTTGCGGTAG-CAGGATCGATAGCACGTAGTGGG
66 ATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGTAGTCA-GATTGGCAACACGTAGGGGG
* ** * * * * * * * * * * *
25470926 GATCA-ATCGATCCTCGGCTTACGCATTCTGCCTCTCTGGCCGACTGAGAGCCCGCACGCTCGTT
130 GACCAGAGGGATCCTCGGATTGCGTATTTTACCTCTCCGACAG-CTGAGCGCCCGCATGCTCATT
* * * * * * * *
25470990 T-CATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGACAGGGGGTTA
194 TCCA-GGGTCGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGAACCGAGAGTTG
* * * * * * * *
25471054 TGGTAGT-AGGACCA--ACCACGGGATCAACAGCACGCAGAGGGGGA-TCGAGCTGATCCTCGAC
258 TGGCA-TCAGGATCAGTAGCA--GGATCGATAGCACGCAGAGGGGGACT-GGGATGATCCCCGAC
* * ** * * *
25471115 TTGCGTATTATGCCTCTCTAACCGGCCTCTCCGGCCGGCTGAGCGCCCG
319 TTGTGCATTATGCCTCTCCGATCGGCCTCTCCGGCTGGCTGAGCACCCG
* * * * *
25471164 TATGCTTGTTTCGA-GGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTT
1 CACGCTCGTTTC-ATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * * * * * *
25471228 CATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGCAGCAG-CAGGATCGACAGCACGCAGGG
65 CATTCCCAGTCTAAGATCGA-ACCGGATCGAGGGTTGCGGTAGTCA-GATTGGCAACACGTAGGG
* ** * * * * * * * * ** *
25471291 GGAACC-GAGCCCATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACACCC
128 GGGACCAGAG-GGATCCTCGGATTGCGTATTTTACCTCTCCGACAG-CTGAGCGCCCGCATGCTC
** ** *
25471355 ATTTCGTGGGTTAGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAG
191 ATTTCCAGGGTCGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAG
25471407 TCAGATCGAG
Statistics
Matches: 867, Mismatches: 97, Indels: 28
0.87 0.10 0.03
Matches are distributed among these distances:
365 3 0.00
366 4 0.00
367 299 0.34
368 560 0.65
369 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (367 bp):
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGTAGTCAGATTGGCAACACGTAGGGGGG
ACCAGAGGGATCCTCGGATTGCGTATTTTACCTCTCCGACAGCTGAGCGCCCGCATGCTCATTTC
CAGGGTCGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGAACCGAGAGTTGTGG
CATCAGGATCAGTAGCAGGATCGATAGCACGCAGAGGGGGACTGGGATGATCCCCGACTTGTGCA
TTATGCCTCTCCGATCGGCCTCTCCGGCTGGCTGAGCACCCG
Found at i:25471227 original size:26 final size:26
Alignment explanation
Indices: 25471190--25471242 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25471180 GTTGACTTAG
*
25471190 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
25471216 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
25471242 G
1 G
25471243 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:25471714 original size:157 final size:156
Alignment explanation
Indices: 25471216--25471716 Score: 449
Period size: 159 Copynumber: 3.2 Consensus size: 156
25471206 CCTAGTCTAA
* * **
25471216 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-CGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
25471281 GCACGCAGGGGGAACCGAGCCCATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACC
65 GCACGTAGGGGGAACAG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCAGAGCACC
* * * *
25471346 CGCACACCCATTTCGTGGGTTAGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * ** * *
25471374 GCATAGGGAGCTCATT-CCATGTCTAAGCCCCAG-TCAGATCGAGGGTTGTGGTGGC-GGTACCA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGA-CGAGGGTTGTGGCAGCAGG-ATCG
* * * * * *
25471436 ACAGCACGTAGAGGGGGACCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGATCGGTTCA-
62 ACAGCACGT--AGGGGGAACAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGG--CAG
* * *
25471500 ATG--CCCGCACGCTCGTTTCGTGGGATGACTTAT
123 A-GCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * *
25471533 GCATATGGAGTTCATTACCAGTCTAAGATTGGATGGGACAGAGGGTTGTGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAC-GAGGGTTGTGGCAGCAGGATCGACA
* * * *
25471598 GCACGTAGGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCAACCGGCAGAGCACCC
65 GCACGTAGGGGGAACAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCAGAGCACCC
*
25471663 GCACGTTCGTTTCGTGGGTTGGCTTAG
130 GCACGCTCGTTTCGTGGGTTGGCTTAG
25471690 GCATACGGAGTTCA-TCCCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
25471717 CATACGGAGC
Statistics
Matches: 267, Mismatches: 60, Indels: 33
0.74 0.17 0.09
Matches are distributed among these distances:
155 3 0.01
156 5 0.02
157 91 0.34
158 47 0.18
159 105 0.39
160 14 0.05
161 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACGAGGGTTGTGGCAGCAGGATCGACAG
CACGTAGGGGGAACAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCAGAGCACCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:25471740 original size:26 final size:26
Alignment explanation
Indices: 25471690--25471742 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25471680 GTTGGCTTAG
* *
25471690 GCATACGGAGTTCATCCCATGTCTAA
1 GCATACGGAGCTCATCCCATATCTAA
25471716 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCA-TCCCATATCTAA
25471742 G
1 G
25471743 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCATATCTAA
Found at i:25473355 original size:158 final size:158
Alignment explanation
Indices: 25472972--25473379 Score: 378
Period size: 158 Copynumber: 2.6 Consensus size: 158
25472962 CCTAGGCTAA
* * ** * * *
25472972 GCATACGGAGTTCATTCCCTGTCTAAGATCGGACCAGACCGAGGGTTACT-GCAGTAGGATCGAT
1 GCATGCGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTT-GTGGCAGTAGGATCGAC
* * * *
25473036 AGCACGCAGGGGGGACCGGGCTGATCCTCGGCTTGTGCATTCTGCCTCTCAGATCGGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCAGATCAGCTCAGCGC
* * * *
25473101 CCGTATGCCTGTTTCGTGGGTTGGCTTAG
130 CCGCACGCCTGTTTCGTGGGTTGACTTAC
* * ** * ** * * * *
25473130 GCATAG-GGAGCTCATT-CCATGTTTAAGCCCCAGTCAAACCAAGGGTTGTGGCAGTGGGACCGG
1 GCAT-GCGGAGTTCATTCCCA-GTCTAAGATCAAACCAGACCAAGGGTTGTGGCAGTAGGATCGA
* * * *
25473193 CAGCACGTAGAGGGGGATC-GGCCGATTCTCGGCTTGTGCATTATGCCTCTTC-GGTCAGCTCAG
64 CAGCACGCAG-GGGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTC-TCAGATCAGCTCAG
*
25473256 CGCCCGCACG-CTCGTTTTGTGGGTTGACTTAC
127 CGCCCGCACGCCT-GTTTCGTGGGTTGACTTAC
* * *
25473288 GCATGCGGAGTTCATTCCCAATCTAAGATCAAACCAGACCAAGGGTTGTGGTAGCAGGATCGACA
1 GCATGCGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGTGGCAGTAGGATCGACA
* * *
25473353 GCACACAGGGGGGGACTGGGTCGATCC
66 GCACGCA-GGGGGGACCGGGCCGATCC
25473380 CCAGCTTATT
Statistics
Matches: 190, Mismatches: 50, Indels: 19
0.73 0.19 0.07
Matches are distributed among these distances:
157 6 0.03
158 164 0.86
159 20 0.11
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.23
Consensus pattern (158 bp):
GCATGCGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGTGGCAGTAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCAGATCAGCTCAGCGCC
CGCACGCCTGTTTCGTGGGTTGACTTAC
Found at i:25473624 original size:26 final size:26
Alignment explanation
Indices: 25473587--25473639 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25473577 ACATACTTAG
25473587 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
25473613 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
25473639 G
1 G
25473640 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:25474137 original size:26 final size:26
Alignment explanation
Indices: 25474087--25474139 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25474077 GTTGGCTTAG
* *
25474087 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
25474113 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
25474139 G
1 G
25474140 ATTTTGAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:25474556 original size:26 final size:26
Alignment explanation
Indices: 25474526--25474575 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
25474516 GACTTAGGCA
*
25474526 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAATCTAAGCG
*
25474552 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATCCCCAATCTAAG
25474576 ATCAGACTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAATCTAAGCG
Found at i:25474898 original size:26 final size:26
Alignment explanation
Indices: 25474862--25474914 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25474852 GTTGACTTAG
25474862 GCATAAGGAGTCCATCCCCAGTCTAA
1 GCATAAGGAGTCCATCCCCAGTCTAA
* * *
25474888 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTCCATCCCCAGTCTAA
25474914 G
1 G
25474915 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATAAGGAGTCCATCCCCAGTCTAA
Found at i:25475185 original size:158 final size:157
Alignment explanation
Indices: 25474959--25475472 Score: 523
Period size: 158 Copynumber: 3.3 Consensus size: 157
25474949 GGTAGCACGT
* * * * *** * *
25474959 AGAGGGGATCAGGCCGATCCC-CAGCTTGTGCATTCTGCCTCTCCACCCGGTTGAGCGCCCGCAT
1 AGAGGGGATCAGGTCGATCCCTGA-CTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCAC
*
25475023 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCTGTCAGACAGA
65 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAG-CCCTGTCAGACCGA
* * * *
25475088 GGATTGTGGTAGCAGGACCGGCAGCACGC
129 GGGTTGTGGTAGCAGGATCGACAGCACAC
* * * * * *
25475117 AGAGGGGATCGGGTCGATCCCTGACTTGTGCATTATGCCTCTTCGGTCGGCTCAGCACCCTCACG
1 AGAGGGGATCAGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACG
* * * ** * *
25475182 CTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-CAGTCTAAGATCGGATCGGACCGA
66 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACA-TCTAAGCCCTG-TCAGACCGA
** *
25475246 GGGTTACGGTAGCAGGATCAACAGCACAC
129 GGGTTGTGGTAGCAGGATCGACAGCACAC
* * * *
25475275 AGGGGGGACCAGGTCGAT-CCTCGACTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCCCGCAC
1 AGAGGGGATCAGGTCGATCCCT-GACTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCAC
* * * * *
25475339 GCTCGTTTCGTGGGTTGGCTTAGGTATGCGTAGTACATTCCACGTCTAAGCCCTAGCCAGACCGA
65 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCT-GTCAGACCGA
* * *
25475404 GGGTTGTGGCAGCGGGATCGACAGCATAC
129 GGGTTGTGGTAGCAGGATCGACAGCACAC
* * * *
25475433 AGAGAGGGATCGGGT-TATCCCCGACTTGCACATTATGCCT
1 AGAG-GGGATCAGGTCGATCCCTGACTTGCGCATTATGCCT
25475473 GTCTGACCGA
Statistics
Matches: 284, Mismatches: 64, Indels: 16
0.78 0.18 0.04
Matches are distributed among these distances:
157 7 0.02
158 264 0.93
159 13 0.05
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
AGAGGGGATCAGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCTGTCAGACCGAGG
GTTGTGGTAGCAGGATCGACAGCACAC
Found at i:25475469 original size:316 final size:315
Alignment explanation
Indices: 25474888--25475559 Score: 740
Period size: 316 Copynumber: 2.1 Consensus size: 315
25474878 CCCAGTCTAA
* * * * ***
25474888 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGC-GTCAGTAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGT-AGCAGGATCAAC
** * * * ** * *
25474952 AGCACGTAGAGGGGATCAGGCCGATCC-CCAGCTTGTGCATTCTGCCTCTCCACCCGGTTGAGCG
65 AGCACACAGGGGGGACCAGGCCGATCCTCGA-CTTACGCATTCTGCCTCTCCGCCCGGCTGAGCG
*
25475016 CCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCTGTC
129 CCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCTGTC
* * * * *
25475081 AGACAGAGGATTGTGGTAGCAGGACCGGCAGCACGCAGAGGGGATCGGGTCGATCCCTGACTTGT
194 AGACAGAGGGTTGTGGTAGCAGGA-CGACAGCATGCAGAGGGGATCGGGTCGATCCCCGACTTGC
25475146 GCATTATGCCTCTTCGGTCGGCTCAGCACCCTCACGCTCGTTTCGTGGGTTGACTTAT
258 GCATTATGCCTCTTCGGTCGGCTCAGCACCCTCACGCTCGTTTCGTGGGTTGACTTAT
*
25475204 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGCAGGATCAACA
* * * **
25475269 GCACACAGGGGGGACCAGGTCGATCCTCGACTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCC
66 GCACACAGGGGGGACCAGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGCCCGGCTGAGCGCC
* * * * *
25475334 CGCACGCTCGTTTCGTGGGTTGGCTTAGGTATGCGTAGTACATTCCACGTCTAAG-CCCTAGCCA
131 CGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCT-GTCA
* * * * *
25475398 GACCGAGGGTTGTGGCAGCGGGATCGACAGCATACAGAGAGGGATCGGGT-TATCCCCGACTTGC
195 GACAGAGGGTTGTGGTAGCAGGA-CGACAGCATGCAGAG-GGGATCGGGTCGATCCCCGACTTGC
* * * * *
25475462 ACATTATGCCTGTCTGACCGACCTCTTCGATCGACTGAGCACCCACACGCTCGTTTCGTGGGTTG
258 GCATTA--------T----G-CCTCTTCGGTCGGCTCAGCACCCTCACGCTCGTTTCGTGGGTTG
*
25475527 ACTTAG
310 ACTTAT
*
25475533 GCATACGGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
25475560 CATACGGAGT
Statistics
Matches: 295, Mismatches: 44, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
315 4 0.01
316 204 0.69
317 14 0.05
324 1 0.00
328 1 0.00
329 71 0.24
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (315 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGCAGGATCAACA
GCACACAGGGGGGACCAGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGCCCGGCTGAGCGCC
CGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCTGTCAG
ACAGAGGGTTGTGGTAGCAGGACGACAGCATGCAGAGGGGATCGGGTCGATCCCCGACTTGCGCA
TTATGCCTCTTCGGTCGGCTCAGCACCCTCACGCTCGTTTCGTGGGTTGACTTAT
Found at i:25475569 original size:26 final size:26
Alignment explanation
Indices: 25475533--25475585 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25475523 GTTGACTTAG
25475533 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
25475559 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
25475585 G
1 G
25475586 ATCAGATTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:25475921 original size:159 final size:158
Alignment explanation
Indices: 25475559--25475980 Score: 391
Period size: 159 Copynumber: 2.7 Consensus size: 158
25475549 CCCAGTCTAA
* * * ** * *
25475559 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGAATCGAGGGTTGCGACAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCAGCA
* * * * * * * **
25475624 GCACGTAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGCCCAGCTGAGTGCC
66 GCACGCAGGGGGGATCAGGTCGATCCTCGGCTTACGCAGTATGCCTCTCCGCCCAGCTCAGCACC
* * *
25475689 CGCATGCTTGTTTCATGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGACTTAG
* ** * * * * *
25475717 GCATACGGAGTACATT-CCATGTCTAAGCCCCTG-TCAGACAGAGGGTTGTGGTAGCAGGACCAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCAG
* * * * * ** *
25475780 CAGCATGCAGAGGGGGATCGGGTCGATCCTCGGTTTACGCAGTATGCCTTTTCGGTCGGCTCAGC
64 CAGCACGCAG-GGGGGATCAGGTCGATCCTCGGCTTACGCAGTATGCCTCTCCGCCCAGCTCAGC
* *
25475845 ACCCGTC-CGCTCGTTTCGTGGGTTGACTTAT
128 ACCCG-CACGCTCGTTTCATGGGTTGACTTAG
* *
25475876 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCAGCA
* * *
25475941 GCACACAGGGGGGGCTCCAGGTCAATCCTCGGCTTACGCA
66 GCACGCA-GGGGGGAT-CAGGTCGATCCTCGGCTTACGCA
25475981 TTCTGNNNNN
Statistics
Matches: 203, Mismatches: 53, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
157 3 0.01
158 51 0.25
159 124 0.61
160 25 0.12
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCAGCA
GCACGCAGGGGGGATCAGGTCGATCCTCGGCTTACGCAGTATGCCTCTCCGCCCAGCTCAGCACC
CGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:25478030 original size:159 final size:156
Alignment explanation
Indices: 25477669--25478232 Score: 465
Period size: 158 Copynumber: 3.6 Consensus size: 156
25477659 AGCTTCATAT
** * * * * * *
25477669 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCATAAGCAAACCCACGAAACGAGCGTGCGGGCACTGA
* * * * * * * *
25477733 ACCGATCGGAGAGACAGAATGCGCAAGCCGAGGATCAACCCGATCTCCCCTTACGTGCTGTC-AT
65 GCCGACCGAAGAGGCATAATGCACAAGCCG-GGATCAGCCCGGTC-CCCC-TACGTGCTGTCGAT
* **** * *
25477797 CCTGCTGGGGCAACCCTCAGTCCGGTCCAA
127 CCCGCTACCACAACCCTCAGTCCGCTCCGA
* * * * *
25477827 TCTTAGACTGGGAATGAACTTCATATGCATAAGTC-AACCCACGAAACGAGAGTACGGGCACTGA
1 GCTTAGACTGGGAATGAACTCCCTATGCATAAG-CAAACCCACGAAACGAGCGTGCGGGCACTGA
* * * *
25477891 GTCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGAT
65 GCCGACCGAAGAGGCATAATGCACAAGCCG-GGATCAGCCCGGT-CCCC-CTACGTGCTGTCGAT
* * * *
25477956 CCCGCTGCCACAACCCTCGGTCCGACT-GGG
127 CCCGCTACCACAACCCTCAGTCCG-CTCCGA
** * * * ** *
25477986 GCTTAGACAT-GGAATGAGTTCCCTATGCCTAAGCGAACCCACGAACCGAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCATAAGCAAACCCACGAAACGAGCGTGCGGGCACTGA
* * *
25478050 ACCGACC-AGAGAGGCAGAATGCACAAGCTGGGATCAGCCCGGTCCCCCTACGTGCTGTCGATCC
65 GCCGACCGA-AGAGGCATAATGCACAAGCCGGGATCAGCCCGGTCCCCCTACGTGCTGTCGATCC
* ** * *
25478114 TGCTACCGTAACCTTCAGTCCGGTCCGA
129 CGCTACCACAACCCTCAGTCCGCTCCGA
* * * *
25478142 TCTTAGACTGGGAATGAACTCCCTATGCATAAGTAAACCCATGAAACGAGCGTGCGGCCACTGAG
1 GCTTAGACTGGGAATGAACTCCCTATGCATAAGCAAACCCACGAAACGAGCGTGCGGGCACTGAG
*
25478207 CCGACTGAAGAGGCATAATGCCACAA
66 CCGACCGAAGAGGCATAATG-CACAA
25478233 CCCTCGGTCC
Statistics
Matches: 320, Mismatches: 73, Indels: 27
0.76 0.17 0.06
Matches are distributed among these distances:
155 2 0.01
156 99 0.31
157 11 0.03
158 111 0.35
159 95 0.30
160 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (156 bp):
GCTTAGACTGGGAATGAACTCCCTATGCATAAGCAAACCCACGAAACGAGCGTGCGGGCACTGAG
CCGACCGAAGAGGCATAATGCACAAGCCGGGATCAGCCCGGTCCCCCTACGTGCTGTCGATCCCG
CTACCACAACCCTCAGTCCGCTCCGA
Found at i:25478786 original size:26 final size:26
Alignment explanation
Indices: 25478750--25478802 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25478740 CCGGTCTGAT
25478750 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25478776 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25478802 C
1 C
25478803 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25479502 original size:26 final size:26
Alignment explanation
Indices: 25479473--25479528 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
25479463 GGCTCAAAAT
*
25479473 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25479499 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25479525 CTTA
1 CTTA
25479529 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25480024 original size:26 final size:26
Alignment explanation
Indices: 25479973--25480025 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25479963 CCAGTCTGAT
*
25479973 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25479999 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25480025 C
1 C
25480026 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25480382 original size:356 final size:353
Alignment explanation
Indices: 25479726--25480779 Score: 1221
Period size: 356 Copynumber: 2.9 Consensus size: 353
25479716 CTGAGCCGGC
* * * * *
25479726 CGAAGAGGCATAATGCGCAAGCTGGGGACCAGCCCGATCCCCCTCTATGTGCTACCGGTCCCGCT
1 CGAAGAGGCATAATGCGCAAGC-CGGGATCAGCCCGATCCCTCTCTATGTGCTATCGGTCCTGCT
* *
25479791 ACCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCA
65 GCCATAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCA
* * * * *
25479856 CG-AATGGGCGTGCGGCCGCTCAGCCGGCC-GAAGAGGCAGAATGCACAAGCTAGGGATCGACCC
130 CGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAA-AGGCAGAATGCGCAAGCTGGGGATCGGCCC
** * * * * *
25479919 GATCTGCCCTGCGTTCTGCCGATCCTACTGCCGCAACCCTTGATCCAGTCTGATCTTAGACTGGG
194 GATCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATCCAGTCTGATCTTAGACTGAG
* *
25479984 AATGAACTCCTTATGCTTAGACTGGGGATGAACT-TCGTATGCCTAAGTCAACCCACGAAACGAG
259 AATGAACTCCGTATGCTTAGACT-GGGATGAACTCT-GTATGCCTAAGTCAACCCACGAAACAAG
* *
25480048 CGTGCGGGCACTCAGCCGGCT-GGAGAGGCCGAT
322 CATGCGGGCACTCAGCCGG-TGGGAGAGGCC-AA
25480081 CGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCC-AGTCCCTCTCTATGTGCTATCGGTCCTGC
1 CGAAGAGGCATAATGCGCAAGCC-GGGATCAGCCCGA-TCCCTCTCTATGTGCTATCGGTCCTGC
*
25480145 TGCCATAACCCTCGATCCAACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCC
64 TGCCATAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCC
* *
25480210 ACGAAACGGGCGTGCGGGCGCTTAGCCGGCCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCC
129 ACGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAAAGGCAGAATGCGCAAGCTGGGGATCGGCCC
* * * * *
25480275 GCTCCCCCCTGCGTGCTGTCGATCCTACTATCGTAACCCTCAATCCAGTCTGATCTTAGACTAAG
194 GATCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATCCAGTCTGATCTTAGACTGAG
* *
25480340 AATGAACTCCGTATGCTTATACTGAGGATGAACTCTGTATGCCTAAGTCAACCAACGAAACAAGC
259 AATGAACTCCGTATGCTTAGACTG-GGATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGC
*
25480405 ATGCGGGCGCTCAGCCGGTGGGAGAGGCCAA
323 ATGCGGGCACTCAGCCGGTGGGAGAGGCCAA
* *
25480436 CAGGAA-AGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCTCA
1 C--GAAGAGGCATAATGCGCAAGCCG-GGATCAGCCCGAT--CCCTCT-C-T-ATGT-G--CT-A
* * ***
25480500 TTGCCGGTCCTGCTGCCATAACCCTC-AGTCCGGCTGGGGCTTAGATATGGAATGTA-CTATGTA
54 -T--CGGTCCTGCTGCCATAACCCTCGA-TCCAGCTGGGGCTTAGACATGGAATG-AGCTCCCTA
* * * ** * *
25480563 TGCCTAAGCAAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGC-GCAATGTGCA
114 TGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAAAGGCAG-AATGCGCA
* * * * * * *
25480627 AGCTGGGGATCAGTCCGGT-CCCCTTGCGTGCTGTCGATCTTGCTACCACAACCCTCGATCC-GA
178 AGCTGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATCCAG-
** * * *
25480690 TCAAATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGAGATCAACTCCGTGTGCCTAAGT
242 TCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGG-GATGAACTCTGTATGCCTAAGT
*
25480755 CAACCCATGAAACAAGCATGCGGGC
306 CAACCCACGAAACAAGCATGCGGGC
25480780 GCTCGACCGA
Statistics
Matches: 601, Mismatches: 70, Indels: 44
0.84 0.10 0.06
Matches are distributed among these distances:
354 1 0.00
355 126 0.21
356 213 0.35
357 8 0.01
358 6 0.01
359 1 0.00
360 1 0.00
361 3 0.00
362 1 0.00
364 2 0.00
365 1 0.00
366 3 0.00
367 116 0.19
368 118 0.20
369 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (353 bp):
CGAAGAGGCATAATGCGCAAGCCGGGATCAGCCCGATCCCTCTCTATGTGCTATCGGTCCTGCTG
CCATAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCAC
GAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAAAGGCAGAATGCGCAAGCTGGGGATCGGCCCGA
TCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATCCAGTCTGATCTTAGACTGAGAA
TGAACTCCGTATGCTTAGACTGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCATG
CGGGCACTCAGCCGGTGGGAGAGGCCAA
Found at i:25481935 original size:25 final size:26
Alignment explanation
Indices: 25481887--25481938 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
25481877 TCCATCCAAT
25481887 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
25481913 CTTAGACT-GGTATGAATTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25481938 C
1 C
25481939 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25481995 original size:13 final size:13
Alignment explanation
Indices: 25481977--25482001 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25481967 GGAGCTTAGC
25481977 CGGTCGGAGAGGT
1 CGGTCGGAGAGGT
25481990 CGGTCGGAGAGG
1 CGGTCGGAGAGG
25482002 CATAATGCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.56, T:0.12
Consensus pattern (13 bp):
CGGTCGGAGAGGT
Found at i:25482444 original size:368 final size:366
Alignment explanation
Indices: 25481695--25482692 Score: 1167
Period size: 368 Copynumber: 2.7 Consensus size: 366
25481685 ATGCACAAGC
* * * * *
25481695 CGGTCCCGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATG-AGCTCTC-TATGCC
1 CGGTCCTGCTGCCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGAATGTA-CT-TCGTATGCC
* * * ** * *
25481758 TAAGCCAACCCATGAAAC-AGGCGTACCGGTGCTCAACCGTTCGGAGAGGTAGAATGCGCAAGCC
64 TAAGCCAACCCACGAAACGA-GCGTGCGGGTGCTCAACCGACCGGAGAGGCAAAATGCGCAAGCC
* * * * * *
25481822 GAGGATCGGCCC-GATCCCTCCTGCGTGCTACCGATCCTGCTGTCGCAACCTTCGGTCCATCCAA
128 GGGGATCGGCCCAG-TCCC-CCCGCGTGCTACCGATCCTGCTGCCGCAACCCTCGATCCATCCGA
* *
25481886 TCTTAGACT-AGGAATGAACTCCGTATGCTTAGACT-GGTATGAA-TTTCGTATGCCTAAGTCAA
191 TCTTAGACTGA-GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCT-GTATGCCTAAGTCAA
* * *
25481948 CCCACGAAACGAGCATACAGGAGCTTAGCCGGTCGGAGAGGTCGGTCGGAGAGGCATAATGCATA
254 CCCACGAAACGAGCATACAGGAGCTCAGCCGCTCGGAGAGGTCGATCGGAGAGGCATAATGCATA
* * * * *
25482013 AGCCAAGGATCAGCTCGGTCCCCCTCTGCGTGCTGTCAATCCCGCTGT
319 AGCCAAGGATCAACCCGATCCCCCTCTACGTGCTATCAATCCCGCTGT
25482061 CGGTCCTGCTGCCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGAATGTACTTCGTATGCCTA
1 CGGTCCTGCTGCCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGAATGTACTTCGTATGCCTA
* * *
25482126 AGCCAACCCACGAAACGAGCGTGCGGGTGCTTAACCGGCCAGAGAGGCAAAATGCGCAAGCCGGG
66 AGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGACCGGAGAGGCAAAATGCGCAAGCCGGG
** * * * *
25482191 GATCAACCCAGTCCCCCCGACGTGTTGCCGGTCCTGCTGCCGTAACCCTCGATCCGATCCGATCT
131 GATCGGCCCAGTCCCCCCG-CGTGCTACCGATCCTGCTGCCGCAACCCTCGATCC-ATCCGATCT
* *
25482256 TAGGCTGAGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCAC
194 TAGACTGAGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCAC
* * * * * ** *
25482321 GAAAGGAGCGTGA-GGGTGCTCAGTCGACT-GGAGAGGTCGATCGGAGAGGCATAATGTGTATGC
259 GAAACGAGCAT-ACAGGAGCTCAGCCG-CTCGGAGAGGTCGATCGGAGAGGCATAATGCATAAGC
** * *
25482384 CGGGGATCAACCCGATCCCTCTCTACGTGCTATCGAA-CCTGCTGT
322 CAAGGATCAACCCGATCCCCCTCTACGTGCTATC-AATCCCGCTGT
* *
25482429 CGGTCCTGCTGCCACAACCCTCT-GTCCTA-CTGTGCCTTAGACATGGAATGTAC-TCTGTATGC
1 CGGTCCTGCTGCCACAACCCT-TGGTCC-AGCTGGGGCTTAGACATGGAATGTACTTC-GTATGC
* * * * *
25482491 CTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAACCGACCGGAGAGGCAAAATGCGTAAGTC
63 CTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGACCGGAGAGGCAAAATGCGCAAGCC
* * **
25482556 GGGGATCGGCCCAGTCCCCCCTGCGTGCTACCGATCCTGCTTCCACAACCCTCGATCCAGTTTGA
128 GGGGATCGGCCCAGTCCCCCC-GCGTGCTACCGATCCTGCTGCCGCAACCCTCGATCCA-TCCGA
* * *
25482621 TCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
191 TCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACC
25482686 CACGAAA
256 CACGAAA
25482693 TAAGAGTACG
Statistics
Matches: 540, Mismatches: 75, Indels: 32
0.83 0.12 0.05
Matches are distributed among these distances:
365 5 0.01
366 147 0.27
367 42 0.08
368 337 0.62
369 9 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (366 bp):
CGGTCCTGCTGCCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGAATGTACTTCGTATGCCTA
AGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGACCGGAGAGGCAAAATGCGCAAGCCGGG
GATCGGCCCAGTCCCCCCGCGTGCTACCGATCCTGCTGCCGCAACCCTCGATCCATCCGATCTTA
GACTGAGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGA
AACGAGCATACAGGAGCTCAGCCGCTCGGAGAGGTCGATCGGAGAGGCATAATGCATAAGCCAAG
GATCAACCCGATCCCCCTCTACGTGCTATCAATCCCGCTGT
Found at i:25482658 original size:26 final size:26
Alignment explanation
Indices: 25482622--25482674 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25482612 CCAGTTTGAT
25482622 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
* *
25482648 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
25482674 C
1 C
25482675 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:25483383 original size:26 final size:26
Alignment explanation
Indices: 25483345--25483397 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25483335 GGCTTGAAAT
*
25483345 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25483371 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25483397 C
1 C
25483398 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25484429 original size:26 final size:26
Alignment explanation
Indices: 25484400--25484450 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25484390 GGCTCAAAAT
**
25484400 CTTAGAC-TGGGAATGTGCTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
25484426 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCTGTAT
25484451 CCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:25484784 original size:26 final size:26
Alignment explanation
Indices: 25484755--25484805 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25484745 CCTATTTGAT
*
25484755 CTTAGACTGGGAATGATCTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
25484781 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
25484806 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:25486017 original size:26 final size:26
Alignment explanation
Indices: 25485988--25486040 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25485978 CCAGTCCGAT
25485988 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
25486014 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25486040 C
1 C
25486041 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25487115 original size:26 final size:26
Alignment explanation
Indices: 25487086--25487136 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25487076 GGCTCAAAAT
*
25487086 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25487112 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
25487137 TCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25487576 original size:26 final size:26
Alignment explanation
Indices: 25487547--25487599 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25487537 CCGGTCCGAT
25487547 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25487573 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25487599 C
1 C
25487600 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25487652 original size:46 final size:46
Alignment explanation
Indices: 25487580--25487671 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 46
25487570 ATGCTTAGAC
* *
25487580 TGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGTGCATG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGTGCATG
*
25487626 TGGGAATGAACTCCGTATGCTTAAGTCAACCCATGAAACGTGCATG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGTGCATG
25487672 CAGGTCGGAG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (46 bp):
TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGTGCATG
Found at i:25488139 original size:355 final size:355
Alignment explanation
Indices: 25487679--25488416 Score: 918
Period size: 355 Copynumber: 2.1 Consensus size: 355
25487669 ATGCAGGTCG
* * * *
25487679 GAGAGGCATAATGCGTAA-CCTGAGGATCAGCCCGGTCCCCCTCTACGTACTGTCGATCTCGCTG
1 GAGAGGCATAATGCGCAAGCC-GGGGATCAGCCCAGTCCCCCTCTACGTACTGTCGATCCCGCTG
* * *
25487743 CTGGTCCTGCTGCCACAACCCTCAATCCGACTGGGGCTTAGATGTGGAATGTACTCCGTATGCCT
65 CTGGTCCTGCTACCACAACACTCAATCCGACTGGAGCTTAGATGTGGAATGTACTCCGTATGCCT
* * * *
25487808 AAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGG-CTGGAGAGGCAGAATACGCAAGCCG
130 AACCCAACCCATGAAACGAGCGTGCGGGAGCTCAACCGGTC-GAAGAGGCAGAATACGCAAGCCG
* * * * * *
25487872 GGGATCGGATCGATCCCCCCTGCGTGCTGCCGATCCTGCT-GTCGCAGCCCTTGATCCGAT-TCA
194 GGGATCGGACCGATCCCCCCTGCGTGCTACCGATCCTGCTACT-GCAACCCTCGATCCGGTCT-A
*
25487935 ATCTCAGA-TAGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT-TCGTATGCCTAAGTCA
257 ATCTCAGACT-GGGAATGAACTCCGAATGCTTAGACTGGGGATGAACTCT-GTATGCCTAAGTCA
* * * *
25487998 ACCCATGAAACGAGCT-TGCGAGCGCTTAGCCAGCCA
320 ACCCATGAAACGAG-TGTGCAAGCACTCAGCCAACCA
* * *
25488034 GAGAGGCATAATGCGCAAGCCGGGGATTAGCCCAGTCCCTCTCTACGTGCTGTCGATCCCGCTG-
1 GAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTACGTACTGTCGATCCCGCTGC
** *
25488098 TCGGTCCTGCTACCACAACACTCGGTCC-AGCTGTAGCTTAGATGTGGAATGTACTCCGTATGCC
66 T-GGTCCTGCTACCACAACACTCAATCCGA-CTGGAGCTTAGATGTGGAATGTACTCCGTATGCC
* * * *
25488162 TAACCCAACCCATGAAACGAGCTTGCGGGAGTTCAACCGGTCGAAGAGGTAGAATGCGCAAGCCG
129 TAACCCAACCCATGAAACGAGCGTGCGGGAGCTCAACCGGTCGAAGAGGCAGAATACGCAAGCCG
* * * * * * *
25488227 GGGATCGGCCCGGTCCTCTCTGCGTGCTATCGATCCTGCTACTGCAACCCTCGATCTGGTCTGAT
194 GGGATCGGACCGATCCCCCCTGCGTGCTACCGATCCTGCTACTGCAACCCTCGATCCGGTCTAAT
* * *
25488292 CTTAGACTGGGAATGAACTCTGAATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCG
259 CTCAGACTGGGAATGAACTCCGAATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCC
*
25488357 ATGAAACGAGTGTGCAAGCACTCAGCCAATCA
324 ATGAAACGAGTGTGCAAGCACTCAGCCAACCA
** *
25488389 GAGAGGCAGGATGTGCAAGCCGGGGATC
1 GAGAGGCATAATGCGCAAGCCGGGGATC
25488417 GAACAGGTGG
Statistics
Matches: 327, Mismatches: 47, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
354 3 0.01
355 317 0.97
356 7 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (355 bp):
GAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTACGTACTGTCGATCCCGCTGC
TGGTCCTGCTACCACAACACTCAATCCGACTGGAGCTTAGATGTGGAATGTACTCCGTATGCCTA
ACCCAACCCATGAAACGAGCGTGCGGGAGCTCAACCGGTCGAAGAGGCAGAATACGCAAGCCGGG
GATCGGACCGATCCCCCCTGCGTGCTACCGATCCTGCTACTGCAACCCTCGATCCGGTCTAATCT
CAGACTGGGAATGAACTCCGAATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCAT
GAAACGAGTGTGCAAGCACTCAGCCAACCA
Found at i:25488322 original size:26 final size:26
Alignment explanation
Indices: 25488292--25488344 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25488282 CTGGTCTGAT
25488292 CTTAGACTGGGAATGAACTCTGAATG
1 CTTAGACTGGGAATGAACTCTGAATG
* *
25488318 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGAATG
25488344 C
1 C
25488345 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGAATG
Found at i:25489544 original size:26 final size:26
Alignment explanation
Indices: 25489515--25489567 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25489505 CTGGTCCGAT
*
25489515 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
25489541 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
25489567 C
1 C
25489568 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:25490926 original size:26 final size:27
Alignment explanation
Indices: 25490897--25490950 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
25490887 CCGGTCTGAT
25490897 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGGAATGAACTCCGTATG
*
25490923 CTTAGACTGAGGGATGAACTCCGTATG
1 CTTAGACTGAGGAATGAACTCCGTATG
25490950 C
1 C
25490951 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (27 bp):
CTTAGACTGAGGAATGAACTCCGTATG
Found at i:25491251 original size:369 final size:364
Alignment explanation
Indices: 25490359--25491725 Score: 1460
Period size: 367 Copynumber: 3.8 Consensus size: 364
25490349 CCGGTCCCGT
* * *
25490359 TGCCATAACCCTCGGTCCGGCTGGGGTTTAGACATGGAATG-AGCTCCGTATGCCTAAGCCAACC
1 TGCCATAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAACC
* * * * * * * *
25490423 CACAAAACGTGCGTGCAGGCTCTTAGTCGATCGGCGAGGCAGAATGC-CAAGTC-AGAGATCGAC
65 CACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGAG-GATCGAC
* * ** * ** * * *
25490486 TTGGTCCCTCCTGTATGCTATCGATACTGTTGCCGCAACCCTCGGTCCGGTCCAATCTTAGAGTG
129 CTGGTCCCCCCTGCGTGCTATCGATCCTGCAGCCGCAACCCTCGATCCGGTCTAATCTTAGACTG
* * *
25490551 GGAATGAACTTCGTATGCTTAGACT-AGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACA
194 GGAATGAACTCCGTATGCTTAGACTGAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * *
25490615 AGCGTGCGGACACTC-A--GTC---GGCCG--GAGAGGCATAATACGTAAGCCGGGGATCAGCTC
259 AGCGTGCGGGCGCTCAACCGTCAAAGGCCGTCGAGAGGCATAATGCGTAAGCTGGGGATCAGCCC
** * * * *
25490672 GATCCTTCTCTGCGTGCTATCGATCCCGTTACC-GATCCTGC
324 GATCCCCCTCTACGTGCTGTCGATCCCGCTGCCAG-TCCTGC
* *
25490713 TGCCAGAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCC
1 TGCCATAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCC
* * * * * * * * * *
25490778 ACGAAATGAGCGTGTGGGTGCTTAGTCGGCCAGAGAGGTAAAATGTGCAAGCCGAGGAT-TAGCC
66 ACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CC
* * * ** *
25490842 CGGTTCCCCCTGCGTGCTGTCGATCCTGTTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGG
130 TGGTCCCCCCTGCGTGCTATCGATCCTGCAGCCGCAACCCTCGATCCGGTCTAATCTTAGACTGG
25490907 GAATGAACTCCGTATGCTTAGACTGAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
195 GAATGAACTCCGTATGCTTAGACTGAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * *
25490972 GCGTGCGGGCGCTCAGCCGATCGAAAAGGCCGATCAGAGAGGCATAATGTGCAAGCTGGGGATCA
260 GCGTGCGGGCGCTCAACCG-TC--AAAGGCCG-TC-GAGAGGCATAATGCGTAAGCTGGGGATCA
*
25491037 GCCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCAGTCCTGC
320 GCCCGATCCCCCTCTACGTGCTGTCGATCCCGCTGCCAGTCCTGC
* * * *
25491082 AGCCATAACCCTCGGTCC-AGCTAGGGCTTAGATGTGAAATGTACTCCGTATGCCTAAGCCAACC
1 TGCCATAACCCTCGGTCCGA-CTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
*** * * * *
25491146 TGTGAAACGAACGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCTGAGGATCGATC
65 CACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACC
* * * * * * * *
25491211 TGGTCCCCCCTGCGTGCTACCGATCCTGCAGTCACAACCCTCAATCTGGTCAAATCTTAGATTAG
130 TGGTCCCCCCTGCGTGCTATCGATCCTGCAGCCGCAACCCTCGATCCGGTCTAATCTTAGACTGG
* * * *
25491276 GAGTGAACTCCGTATGCTTAGACTG-GGGATGAACTCTGTATGCCTAAATCAACCCATG-AACGA
195 GAATGAACTCCGTATGCTTAGACTGAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * *
25491339 GCGTGCGGGCGGTCAACCGGCCAGAGAGACCGGTCGGAGAGGCATAATGCGTAAG-TCGAGGATC
260 GCGTGCGGGCGCTCAACC-GTCA-A-AGGCC-GTC-GAGAGGCATAATGCGTAAGCT-GGGGATC
* ** * * *
25491403 AGCCCAATCCCCCTCTATATGCTGTCAATCCCACTGCCAGTCCTAC
319 AGCCCGATCCCCCTCTACGTGCTGTCGATCCCGCTGCCAGTCCTGC
* * * *
25491449 TGCCACAAGCCTCCGTCCGACTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCC
1 TGCCATAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCC
* * ** * *
25491514 ACGAAACGAGCGTGCGGGTGCTCAGTCGATCGGAGAGGCAGAATATGCAAGCCGGGGATCGGCCT
66 ACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCT
* * * * *
25491579 GATCCCCCCTGTGTGCTGTCGATCCTGCTA-TCGCAACCCTCGATCCGGTCTGATCTTAGACTGG
131 GGTCCCCCCTGCGTGCTATCGATCCTGC-AGCCGCAACCCTCGATCCGGTCTAATCTTAGACTGG
* * * *
25491643 GAATGAACTCTGTAAGCTTAGACTGA-GGATGAACTCCATATGCCTAAGTCAACCCGCGAAACGA
195 GAATGAACTCCGTATGCTTAGACTGAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
25491707 GCGTGCGGGCGCTCAACCG
260 GCGTGCGGGCGCTCAACCG
25491726 ACCAGAGAGG
Statistics
Matches: 837, Mismatches: 146, Indels: 47
0.81 0.14 0.05
Matches are distributed among these distances:
354 91 0.11
355 87 0.10
356 52 0.06
359 1 0.00
360 2 0.00
365 6 0.01
366 2 0.00
367 298 0.36
368 57 0.07
369 239 0.29
370 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (364 bp):
TGCCATAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCT
GGTCCCCCCTGCGTGCTATCGATCCTGCAGCCGCAACCCTCGATCCGGTCTAATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGCGCTCAACCGTCAAAGGCCGTCGAGAGGCATAATGCGTAAGCTGGGGATCAGCCCGA
TCCCCCTCTACGTGCTGTCGATCCCGCTGCCAGTCCTGC
Found at i:25492733 original size:159 final size:156
Alignment explanation
Indices: 25492368--25492798 Score: 447
Period size: 159 Copynumber: 2.7 Consensus size: 156
25492358 AGATCCGTAT
* * *
25492368 GCTTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGTACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * ** *
25492433 CCGACCGGAGAGACAGAATGCGCAAGCCGAGGATCGACATGGTCCCCCCAACATGCTGTTGATCT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCAACA-GCTGTTGATCC
* *
25492498 TGCTCCCACAACCCTTGGTCTGGTCCCA
130 CGCTCCCACAACCCTCGGTCTGG-CCCA
* * * * * * *
25492526 TCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * **
25492590 GCCGGTCGAAGAGGCATAATGCACAAGCCGAGGATCAACCCGGTCCCCCTTTAC-G-TGTTGCCA
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCC-CAACAGCTGTTG--A
* * *
25492653 GTCCCGCTGCCATAACCCTCGGTCTGG-CTA
127 -TCCCGCTCCCACAACCCTCGGTCTGGCCCA
* * * *
25492683 GGGCTTAGACATGGAATGAGCTCCCTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCGCTC
1 --GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTC
* * *
25492748 AGTCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCC
64 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCC
25492799 TGCGTGCTAT
Statistics
Matches: 219, Mismatches: 46, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
156 5 0.02
157 4 0.02
158 93 0.42
159 116 0.53
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.17
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCAACAGCTGTTGATCCC
GCTCCCACAACCCTCGGTCTGGCCCA
Found at i:25492884 original size:25 final size:25
Alignment explanation
Indices: 25492848--25492895 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
25492838 CCTGATCTTA
*
25492848 GACTGGGAATGAACTCTGTATGCTT
1 GACTGGGAATGAACTCCGTATGCTT
25492873 GACTAGGG-ATGAACTCCGTATGC
1 GACT-GGGAATGAACTCCGTATGC
25492896 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 18 0.86
26 3 0.14
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (25 bp):
GACTGGGAATGAACTCCGTATGCTT
Found at i:25493568 original size:25 final size:25
Alignment explanation
Indices: 25493532--25493579 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
25493522 CCCGATCTTA
25493532 GACTGGGAATGAACTCCGTATGCTT
1 GACTGGGAATGAACTCCGTATGCTT
25493557 GACTAGGG-ATGAACTCCGTATGC
1 GACT-GGGAATGAACTCCGTATGC
25493580 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (25 bp):
GACTGGGAATGAACTCCGTATGCTT
Found at i:25493675 original size:684 final size:684
Alignment explanation
Indices: 25492368--25493821 Score: 2595
Period size: 684 Copynumber: 2.1 Consensus size: 684
25492358 AGATCCGTAT
* * ** * *
25492368 GCTTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGTACTCAG
1 GCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* *
25492433 CCGACCGGAGAGACAGAATGCGCAAGCCGAGGATCGACATGGTCCCCCCAACATGCTGTTGATCT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACATGGTCCCCCCAACATGCTGTCGATCT
25492498 TGCTCCCACAACCCTTGGTCTGGTCCCATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
131 TGCTCCCACAACCCTTGGTCTGGTCCCATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
*
25492563 CCCACGAAACGAGCGTGCGGGCACTGAGCCGGTCGAAGAGGCATAATGCACAAGCCGAGGATCAA
196 CCCACGAAACGAGCGTGCGGGCACTGAGCCGGCCGAAGAGGCATAATGCACAAGCCGAGGATCAA
* *
25492628 CCCGGTCCCCCTTTACGTGTTGCCAGTCCCGCTGCCATAACCCTCGGTCTGGCTAGGGCTTAGAC
261 CCCGGTCCCCCTTTACGTGTTGCCAGTCCCGCTGCCATAACCCTCGGTCCGGCTAGGGCTTACAC
*
25492693 ATGGAATGAGCTCCCTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGG
326 ATGGAAGGAGCTCCCTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGG
*
25492758 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTATCAATCCTGCTACTG
391 AGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTATCAATCCTGCTACTG
* *
25492823 CAACCCTCGATCCGGCCTGATCTTAGACTGGGAATGAACTCTGTATGCTTGACTAGGGATGAACT
456 CAACCCTCGATCCGGCCCGATCTTAGACTGGGAATGAACTCCGTATGCTTGACTAGGGATGAACT
25492888 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCTAGAGAGGCCGACCG
521 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCTAGAGAGGCCGACCG
* *
25492953 AAGAGGCATCATGCACAAGCCAGGGATCAGCCCGTTCCTCCTCTGCGTGCTGTCGATCCCGCTAT
586 AAGAGGCATCATGCACAAGCCAAGGATCAGCCCGTTCCTCCTCTGCGTGCTGTCGATCCCACTAT
*
25493018 CGGTCCTGCTGCCACAACCCTCAGTTCGGCTGGG
651 CGGTCCTGCTACCACAACCCTCAGTTCGGCTGGG
25493052 GCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
*
25493117 ACCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACATGGTCCCCCCTACATGC-GTCGATC
66 -CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACATGGTCCCCCCAACATGCTGTCGATC
25493181 TTGCTCCCACAACCCTTGGTCTGGTCCCATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCA
130 TTGCTCCCACAACCCTTGGTCTGGTCCCATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCA
* *
25493246 ACCCATGAAACGAGCGTGCGGGCACTGAGCCGGCCGAAGAGGCATAATGCATAAGCCGAGGATCA
195 ACCCACGAAACGAGCGTGCGGGCACTGAGCCGGCCGAAGAGGCATAATGCACAAGCCGAGGATCA
* *
25493311 ACCCGGTCCCCCTTTGCGTGTTGCCAGTCCCGCTGCCATAACCCTCGGTCCGGCTGGGGCTTACA
260 ACCCGGTCCCCCTTTACGTGTTGCCAGTCCCGCTGCCATAACCCTCGGTCCGGCTAGGGCTTACA
25493376 CATGGAAGGAGCTCCCTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCG
325 CATGGAAGGAGCTCCCTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCG
* * * *
25493441 GAGAGGTAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCAATCCTGTTGCT
390 GAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTATCAATCCTGCTACT
*
25493506 GCAACCCTCGATCTGGCCCGATCTTAGACTGGGAATGAACTCCGTATGCTTGACTAGGGATGAAC
455 GCAACCCTCGATCCGGCCCGATCTTAGACTGGGAATGAACTCCGTATGCTTGACTAGGGATGAAC
*
25493571 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCTAGAGAGGCCGGCC
520 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCTAGAGAGGCCGACC
* *
25493636 GAAGAGGCATTATGCACAAGCTAAGGATCAGCCCGTTCCTCCTCTGCGTGCTGTCGATCCCACTA
585 GAAGAGGCATCATGCACAAGCCAAGGATCAGCCCGTTCCTCCTCTGCGTGCTGTCGATCCCACTA
25493701 TCGGTCCTGCTACCACAACCCTCAGTTCGGCTGGG
650 TCGGTCCTGCTACCACAACCCTCAGTTCGGCTGGG
* *
25493736 GCTTAAACGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
25493801 CCGACCGGAGAGGCAGAATGC
66 CCGACCGGAGAGGCAGAATGC
25493822 ATAAGTCAGG
Statistics
Matches: 736, Mismatches: 33, Indels: 3
0.95 0.04 0.00
Matches are distributed among these distances:
683 21 0.03
684 661 0.90
685 54 0.07
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (684 bp):
GCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACATGGTCCCCCCAACATGCTGTCGATCT
TGCTCCCACAACCCTTGGTCTGGTCCCATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
CCCACGAAACGAGCGTGCGGGCACTGAGCCGGCCGAAGAGGCATAATGCACAAGCCGAGGATCAA
CCCGGTCCCCCTTTACGTGTTGCCAGTCCCGCTGCCATAACCCTCGGTCCGGCTAGGGCTTACAC
ATGGAAGGAGCTCCCTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGG
AGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTATCAATCCTGCTACTG
CAACCCTCGATCCGGCCCGATCTTAGACTGGGAATGAACTCCGTATGCTTGACTAGGGATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCTAGAGAGGCCGACCG
AAGAGGCATCATGCACAAGCCAAGGATCAGCCCGTTCCTCCTCTGCGTGCTGTCGATCCCACTAT
CGGTCCTGCTACCACAACCCTCAGTTCGGCTGGG
Found at i:25493935 original size:26 final size:26
Alignment explanation
Indices: 25493895--25493946 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
25493885 TCGATCCGAT
*
25493895 TTAGATTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
*
25493921 TTAGACTGGGGATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
25493947 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:25494978 original size:159 final size:158
Alignment explanation
Indices: 25494648--25495012 Score: 407
Period size: 159 Copynumber: 2.3 Consensus size: 158
25494638 CTTAGACATA
* * * *
25494648 GAATGAACTCCGTATTCCTAAG-CTAACCCACGAAAC-AAGCGTGCGGGTGCTTAGCCAGTCGGA
1 GAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAA-CGTGCGGGCGCTGAGCCAGTCGAA
* * * *
25494711 GAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTGTTGATCCTACTGCCAC
64 AAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTATCGATCCTACTACCAC
* *
25494776 AACCCTCAGTCTGGTCTGATCTTAGACTGG
129 AACCCTCAGTCTGATCCGATCTTAGACTGG
* * *
25494806 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAACGTGCGGGCGCTGAGCCGGTTGAAAA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTGAGCCAGTCGAAAA
* * * * * * * **
25494871 GGC-GTAATGCGCAAGCCGGGGATTGGCCTGGTCCCCCTCTGCGTGCTATCGATCCTGCTACTGC
66 GGCAG-AATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTGCATGCTATCGATCCTACTACCAC
25494935 AACCCTCTA-TCTGATCCGATCTTAGACTGG
129 AACCCTC-AGTCTGATCCGATCTTAGACTGG
* * * *
25494965 GAATGAACACCGTATGCCTAAGGT-AACCCATGAAACGAGCGTACGGGC
1 GAATGAACTCCGTATGCCTAA-GTCAACCCACGAAACGAACGTGCGGGC
25495013 ACTCAGCTGA
Statistics
Matches: 174, Mismatches: 27, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
157 1 0.01
158 82 0.47
159 88 0.51
160 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTGAGCCAGTCGAAAA
GGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTATCGATCCTACTACCACAA
CCCTCAGTCTGATCCGATCTTAGACTGG
Found at i:25496720 original size:26 final size:26
Alignment explanation
Indices: 25496668--25496720 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25496658 CTGGTCTGAT
* *
25496668 CTTAGATTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
25496694 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
25496720 C
1 C
25496721 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:25498042 original size:25 final size:26
Alignment explanation
Indices: 25498007--25498058 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
25497997 CCGGTCTGAT
25498007 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25498033 CTTA-ACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25498058 C
1 C
25498059 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25499880 original size:368 final size:367
Alignment explanation
Indices: 25499094--25500073 Score: 923
Period size: 368 Copynumber: 2.7 Consensus size: 367
25499084 GTCCCGCTAG
* * ** *
25499094 CACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTTAAGCCAACCCA
1 CACAACCCTCGGTCCGAATGGGGCTTAGATGTGGAATGTA-CTCCGTATGCC-TAAGCCAACCCA
* * ** * * ** * * * * * * *
25499158 TGAAACG-GACATGTGGGCACTTAGCCGGTCAAAGAGGCAAAATGTGCAAGCCGGGGACCAACCC
64 CGAAACGAG-CGTGCAGGCACTCAGTCGAACGAAGAGGCAGAATGCGCAAGCAGAGAATCAACCC
* * * * * *
25499222 GGTCCCCCCTGCAT-CTTGCCGATCCTGCTACCGTAACCCTCGGTCCGTTCCGATCTTAGATTGG
128 GGTCCCCCCTGCATGC-TGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGG
*** * * * * *
25499286 GAATGAACTCCATATGCTTAGACTGGGGATGAACT-TCGTATGCCTAAGTCAACCCATGAAACAA
192 GAATGAACTCTGCATGCTTAGAC-GAGAATGAACTCT-ATATGCCTAAGTCAACCCACGAAACGA
* * * * *
25499350 GCAT-C-CA-G----GT-GTTCAGCCGA--CCGGA--G--AGGCATAATGCGTGAG-CTGAGGAT
255 GCATACGAACGCTCAGTCGGTCAG-AGAGGCCGGATGGAAAGGCATAATGCGTAAGTC-GGGGAT
* * * * *
25499400 C-AGCCCGATCCCCCTCTGCGTGCTACCAATCCCGCTGCCGATCCTGCTAC
318 CAAGTCAG-GCCCCCTCTGCGTGCTACCAATCCCGCTACCGATCCTACTAC
** *
25499450 CACAACCCTCGGTCCGGTTGGGGCTTAGATGTGGAATGTACTGCGTATGCCTAAGCCAACCCACG
1 CACAACCCTCGGTCCGAATGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACG
* ** * * *
25499515 AAACGAGCGTGCGGGTGCTCAG-CTG-GCCAGAGAGGTAGAATGCGCAAGTCAGAG-ATCAACCC
66 AAACGAGCGTGCAGGCACTCAGTC-GAACGA-AGAGGCAGAATGCGCAAG-CAGAGAATCAACCC
* * ** * *
25499577 GGTCCCCCCTGTATGCTGTCGATCTTGCTGTTGCAACCTTCGATCCGGTCTGATCTTAGACTGGG
128 GGTCCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGG
* * * *
25499642 AATGAA-TTTCGCATGCTTAGACCGGGGATGAACTC-ATTATGCCTAAGTCGACCCACGAAACGA
193 AATGAACTCT-GCATGCTTAGA-CGAGAATGAACTCTA-TATGCCTAAGTCAACCCACGAAACGA
25499705 GCATACGAACGCTCAGTCGGTCAGAGAGGCCGGATGGAAAGGCATAATGCGTAAGTCGGGGATCA
255 GCATACGAACGCTCAGTCGGTCAGAGAGGCCGGATGGAAAGGCATAATGCGTAAGTCGGGGATCA
* ** * * *
25499770 AGTCAGGCCCCCTCTGCGTGCTGCTGATCCCGCTACCGGTCCTATTGC
320 AGTCAGGCCCCCTCTGCGTGCTACCAATCCCGCTACCGATCCTACTAC
*
25499818 CACAACCCTCGGTCCGAATGGGGTTTAGACT-TGGAATGTACTCCGTATGCCTAAGCCAACCCAC
1 CACAACCCTCGGTCCGAATGGGGCTTAGA-TGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
* * ** *
25499882 GGAACGAGCGTGCAGGCACTCAGTCGAACGAAGAGGCAGAATGCGCAAGCCGAGAATCGGCCTGG
65 GAAACGAGCGTGCAGGCACTCAGTCGAACGAAGAGGCAGAATGCGCAAGCAGAGAATCAACCCGG
* *
25499947 TCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAA
130 TCCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAA
* *
25500012 TGAACTCTGCATGTTTAGACTAGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGC
195 TGAACTCTGCATGCTTAGACGAGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGC
25500074 GTGCGGGCGC
Statistics
Matches: 506, Mismatches: 86, Indels: 53
0.78 0.13 0.08
Matches are distributed among these distances:
354 4 0.01
355 155 0.31
356 49 0.10
357 2 0.00
358 1 0.00
362 4 0.01
363 5 0.01
364 5 0.01
366 1 0.00
367 41 0.08
368 228 0.45
369 11 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (367 bp):
CACAACCCTCGGTCCGAATGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACG
AAACGAGCGTGCAGGCACTCAGTCGAACGAAGAGGCAGAATGCGCAAGCAGAGAATCAACCCGGT
CCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAAT
GAACTCTGCATGCTTAGACGAGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCATAC
GAACGCTCAGTCGGTCAGAGAGGCCGGATGGAAAGGCATAATGCGTAAGTCGGGGATCAAGTCAG
GCCCCCTCTGCGTGCTACCAATCCCGCTACCGATCCTACTAC
Found at i:25501253 original size:26 final size:26
Alignment explanation
Indices: 25501212--25501264 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25501202 CCGGTCCGAT
* *
25501212 CTTAGACTGGAAATGAAGTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
25501238 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
25501264 C
1 C
25501265 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:25502603 original size:355 final size:353
Alignment explanation
Indices: 25502096--25503408 Score: 1466
Period size: 355 Copynumber: 3.7 Consensus size: 353
25502086 TCGGTCTGAA
* * * * * * * *
25502096 TGGGGCTTGGACATGGAAT-TAGCTCCCTATGCCTAAGCTAACCCACGAAACG-GACATGCAGGC
1 TGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGT
* * * * * * *
25502159 GCTCAGC-GGACCGAAAAGGTAGAATGCGCAAGCCGGGGATCGCCTCGATCCCCCTGCGTGCTGT
64 GCTTAGCTGG-CCGGAGAGGCAGAATGCACAAGCTGGGGATCGACTCGATCCCCCTGCGTGCTGT
* * *
25502223 CGATCCT-TCTGTTCGCAACCCTCGGTCTGGTCCGATCTTAGACT-GGATTTGAACTCCGTATGC
128 CGATCCTAT-TG-TCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGA-ATGAACTCCGTATGC
*
25502286 TTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCTCAACC
190 TTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACC
* * *
25502351 GACCGAAAAGGCATAGTGCGTAAACTAGGGATCAGCTCGATCCCCCTCCGCGTGCTGTCGATCCA
255 GACCGAAAAGGCATAATGCGTAAGCTAGGGATCAGCTCGATCCCCCTCTGCGTGCTGTCGATCC-
* *
25502416 ACTGTCGGTCCTGCTGCTACAACCCTTTGTCCAGC
319 ACTGTCGGTCTTGCTGCTACAACCCTTAGTCCAGC
* ***
25502451 TGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGCACGC
1 TGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGC
* * *
25502516 TTAACCGGCCGGAGACGCAGAATGCACAAGCTGGGGATCGACTCGATCCCCCCTGCGTGCTGTCG
66 TTAGCTGGCCGGAGAGGCAGAATGCACAAGCTGGGGATCGACTCGAT-CCCCCTGCGTGCTGTCG
* * * * * * *
25502581 ATCCT-TCTGTCGTAACCCTCGGTCTGATCCAATCTTAGACTGGCAATGAAATCCGTATGCTTAG
130 ATCCTAT-TGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* ** * *
25502645 ACTTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGTTGCTCAGCCAACC
194 ACTTGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACCGACC
* * ** * *
25502710 GAAGAGGCATAATGCATAAGCCGGGGATCAGCTCGATCCCCCTCTGTGTGCTGCCGATCTCACTG
259 GAAAAGGCATAATGCGTAAGCTAGGGATCAGCTCGATCCCCCTCTGCGTGCTGTCGATC-CACTG
* * *
25502775 TCAGTCTTGCTGCCACAACCCTTGGTCCAGC
323 TCGGTCTTGCTGCTACAACCCTTAGTCCAGC
* * *
25502806 TAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGTCAA--C-TGAAATGAGCGTGCGGGTGC
1 TGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGC
* * * * * *
25502868 TTAGCTGGTCGGAGAGGCAGAATG-GCAAGCTGGGGATCGGCACGGTCCCCCTACGTGCTGTCGA
66 TTAGCTGGCCGGAGAGGCAGAATGCACAAGCTGGGGATCGACTCGATCCCCCTGCGTGCTGTCGA
*
25502932 TCCTATTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
131 TCCTATTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* ** * * * *
25502997 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTATGAGCGTTCAACTGACCGA
196 TTGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACCGACCG-
* * * * *
25503062 AGAGATCGATCGGAGACACATAATGTGTAAGCTAGGGATCGGCTCGGTCCCCCTCTACGTGCTAT
260 A-A-A---A---G-G---CATAATGCGTAAGCTAGGGATCAGCTCGATCCCCCTCTGCGTGCTGT
* * * *
25503127 CGATCCCGCT-TCGGTCTTACTG-TCACAACCCTCAGTCCAGT
313 CGAT-CCACTGTCGGTCTTGCTGCT-ACAACCCTTAGTCCAGC
* * *
25503168 TGGGGCTTAGACGTGGAATGTACTCTGTAAGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGC
1 TGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGC
* * * *
25503233 TCAGCTGACCGAAGAGGCAGAATGCACAAG-TCGGGGATCGACCCGATCCCCCCTGCGTGCTGTC
66 TTAGCTGGCCGGAGAGGCAGAATGCACAAGCT-GGGGATCGACTCGAT-CCCCCTGCGTGCTGTC
* * *
25503297 GATCCTATTGTCGCAACCCTCGATCCGGTCTGATCTTACACTGGGAATCAACTCCGTATGCTTAG
129 GATCCTATTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* *
25503362 AC-TGGAGATGAACTCTGTATGCCTAAGTCAACCCACAAAACAAGCGT
194 ACTTGG-GATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGT
25503409 GCTGGTGCTC
Statistics
Matches: 809, Mismatches: 120, Indels: 46
0.83 0.12 0.05
Matches are distributed among these distances:
350 126 0.16
351 20 0.02
352 37 0.05
353 1 0.00
355 309 0.38
356 35 0.04
359 1 0.00
360 1 0.00
362 61 0.08
363 44 0.05
364 2 0.00
365 39 0.05
366 18 0.02
367 115 0.14
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (353 bp):
TGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGC
TTAGCTGGCCGGAGAGGCAGAATGCACAAGCTGGGGATCGACTCGATCCCCCTGCGTGCTGTCGA
TCCTATTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TTGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACCGACCGA
AAAGGCATAATGCGTAAGCTAGGGATCAGCTCGATCCCCCTCTGCGTGCTGTCGATCCACTGTCG
GTCTTGCTGCTACAACCCTTAGTCCAGC
Found at i:25502643 original size:26 final size:26
Alignment explanation
Indices: 25502614--25502666 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25502604 CTGATCCAAT
25502614 CTTAGAC-TGGCAATGAAATCCGTATG
1 CTTAGACTTGG-AATGAAATCCGTATG
* *
25502640 CTTAGACTTGGGATGAACTCCGTATG
1 CTTAGACTTGGAATGAAATCCGTATG
25502666 C
1 C
25502667 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTTGGAATGAAATCCGTATG
Found at i:25502993 original size:26 final size:26
Alignment explanation
Indices: 25502964--25503016 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25502954 CCGGTCCGAT
25502964 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25502990 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25503016 C
1 C
25503017 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25503360 original size:26 final size:26
Alignment explanation
Indices: 25503331--25503383 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
25503321 CCGGTCTGAT
25503331 CTTACACTGG-GAATCAACTCCGTATG
1 CTTACACTGGAG-ATCAACTCCGTATG
* * *
25503357 CTTAGACTGGAGATGAACTCTGTATG
1 CTTACACTGGAGATCAACTCCGTATG
25503383 C
1 C
25503384 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGAGATCAACTCCGTATG
Found at i:25504973 original size:26 final size:26
Alignment explanation
Indices: 25504923--25504975 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25504913 CCAGTCCAAT
*
25504923 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAAATTCGTATG
*
25504949 CTTAGACTAGGGATGAAA-TCTGTATG
1 CTTAGACTAGGAATGAAATTC-GTATG
25504975 C
1 C
25504976 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATTCGTATG
Found at i:25505136 original size:26 final size:26
Alignment explanation
Indices: 25505107--25505159 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25505097 TCGGTCCAAT
25505107 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25505133 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25505159 C
1 C
25505160 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25505230 original size:184 final size:184
Alignment explanation
Indices: 25504764--25505231 Score: 514
Period size: 184 Copynumber: 2.5 Consensus size: 184
25504754 TTCGGCTGGG
* * * *
25504764 GCTTAGAC-ATGGAATGTACTCCGTATGCCTAAG-CTAACCCACGAAACGGGCGTT-CGAGCGCT
1 GCTTAGACTA-GGGATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGC-TTGCGGGCGCT
* * * * *** * *
25504826 CAGCCGGCTAAAGAGGTAGAATGCGCTAGTTAAGGATCGGTCTGGTTCCCCCTGCGTGCTGCCAA
63 CAGCCGACTAGAGAGGCAGAATGCGCAAGTCGGGGATCGGTCTGGTACCCCCTGCGTGCCGCCAA
* * *
25504891 TCCTGTTGCCGCAACCCACGATCCAGTCCAATCTTAGACTAGGAATGAACTTCGTAT
128 TCCTGCTGCCACAACCCACGATCCAGTCCAATCTTAGACTAGGAATGAACTCCGTAT
* * * * *
25504948 GCTTAGACTAGGGATGAAATCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGCGCTCAG
* * ** * * *
25505013 CCGACTGGAGAGGCATAATGCATAAGCCGGGGATCGG-CTCGGTACCCCCTGCGTGCCGTCGATC
66 CCGACTAGAGAGGCAGAATGCGCAAGTCGGGGATCGGTCT-GGTACCCCCTGCGTGCCGCCAATC
* * * *
25505077 CTGCTGTCACAACCCTCGAAT-CGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
130 CTGCTGCCACAACCCACG-ATCCAGTCCAATCTTAGACTAGGAATGAACTCCGTAT
* * * *
25505132 GCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCTTGCGGGAGCTCAG
1 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGCGCTCAG
* *
25505197 CCGACCAGAGAGGCAGGATGCGCAAGTCGGGGATC
66 CCGACTAGAGAGGCAGAATGCGCAAGTCGGGGATC
25505232 AAACGGGTGG
Statistics
Matches: 231, Mismatches: 48, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
183 3 0.01
184 224 0.97
185 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.21
Consensus pattern (184 bp):
GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGCGCTCAG
CCGACTAGAGAGGCAGAATGCGCAAGTCGGGGATCGGTCTGGTACCCCCTGCGTGCCGCCAATCC
TGCTGCCACAACCCACGATCCAGTCCAATCTTAGACTAGGAATGAACTCCGTAT
Found at i:25506359 original size:26 final size:26
Alignment explanation
Indices: 25506323--25506375 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25506313 CTGGTCTGAT
25506323 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25506349 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25506375 C
1 C
25506376 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25507908 original size:26 final size:26
Alignment explanation
Indices: 25507879--25507931 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25507869 CCGATTTGAT
*
25507879 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25507905 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25507931 C
1 C
25507932 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25509142 original size:355 final size:360
Alignment explanation
Indices: 25508723--25509560 Score: 1059
Period size: 368 Copynumber: 2.3 Consensus size: 360
25508713 GCAAGCCGAG
** * * * *
25508723 GATCCTACTGCCGCAACCCTTGGTCCGATCCGATCTAAAACTGGGAATGAACTTCGTATGCTTAG
1 GATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAG
* * *
25508788 ACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGTGTTCAG-C-C-A
66 ACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTCAGCCGCAA
* *
25508850 -G-CCGAAGAGGCATAATGCGCAAGCTGAGGATC-AGCCCGATCCCCTTCCGCATGCTACCGATC
131 GGACCGAAGAGGCATAATGCGCAAGCTGAGGATCTA-CCCGATCCCCCTCCACATGCTACCGATC
25508912 CCGCTACCAGTCCTACTGCCACAACCCTCGGTCCGACT-GAGGCTTAGACATGGAATGTACTCCG
195 CCGCTACCAGTCCTACTGCCACAACCCTCGGTCCGACTAG-GGCTTAGACATGGAATGTACTCCG
* *** *
25508976 TATGCCTAAGCCAACCCACGAAACAAGCGTGCAAGCGCTCAGTTGGCCGGAGAGGCAGAATGCAC
259 TATGCCTAAGCCAACCCACGAAACAAGCGTACAAGCGCTCAACCGGCCAGAGAGGCAGAATGCAC
** * *
25509041 AAGCCAGGGATCGATTCG-GTCCCCCTTGCGTGCT-AC
324 AAGCCAGGGATCGACCCGAGTCCCCC-TACGTACTGAC
* * *
25509077 AGATCCTACTATCGCAACCCTCGATCTGATCCGATCTTAGATTGGGAATGCAC-TCTGTATGCTT
1 -GATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTC-GTATGCTT
* *
25509141 AGACAGGGGATGAAC-TCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGTTCAGCCG
64 AGACTGGGGATGAACTTC-GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTCAGCC-
* *
25509205 GTCGAAGAGGTCGACCGAAGAGGCATAATGCGCAAGCTGAGGATCTACCCGGTCCCCCTCTACAT
127 G-C--A-A-G--GACCGAAGAGGCATAATGCGCAAGCTGAGGATCTACCCGATCCCCCTCCACAT
** * * **
25509270 GCTGTCGATCTCGCTACCAGTCCTACTGCCACAACCCTCGGTCTGACTAGGGCTTAGATGTGGAA
185 GCTACCGATCCCGCTACCAGTCCTACTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAA
* * * *
25509335 TGTACTCCGTATGCCTAAGGCAACCCATGAAACTAGCGTACGAGCGCTCAACCGGCCAGAGAGGC
250 TGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTACAAGCGCTCAACCGGCCAGAGAGGC
** * *
25509400 AGAATGCGTAAGCCAGGGATCGACCCGATTCCCCCTACGTACTGTC
315 AGAATGCACAAGCCAGGGATCGACCCGAGTCCCCCTACGTACTGAC
* *
25509446 GATCCTGCTATCGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAG
1 GATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAG
* * *
25509511 ACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
66 ACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCG
25509561 ATCGCTCAGC
Statistics
Matches: 411, Mismatches: 51, Indels: 29
0.84 0.10 0.06
Matches are distributed among these distances:
354 4 0.01
355 104 0.25
356 1 0.00
359 1 0.00
363 1 0.00
367 1 0.00
368 287 0.70
369 12 0.03
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (360 bp):
GATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAG
ACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTCAGCCGCAA
GGACCGAAGAGGCATAATGCGCAAGCTGAGGATCTACCCGATCCCCCTCCACATGCTACCGATCC
CGCTACCAGTCCTACTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGTACTCCGTA
TGCCTAAGCCAACCCACGAAACAAGCGTACAAGCGCTCAACCGGCCAGAGAGGCAGAATGCACAA
GCCAGGGATCGACCCGAGTCCCCCTACGTACTGAC
Found at i:25509521 original size:26 final size:26
Alignment explanation
Indices: 25509480--25509532 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25509470 CCGATCCGAT
*
25509480 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25509506 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
25509532 C
1 C
25509533 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25510707 original size:26 final size:26
Alignment explanation
Indices: 25510664--25510714 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
25510654 GGTCTGATCA
25510664 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
* * * *
25510690 TAGATTGGGGATGTACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
25510715 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:25511764 original size:26 final size:26
Alignment explanation
Indices: 25511744--25511813 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
25511734 TCTTAGATTG
* *
25511744 GGAATGAGCTCTGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
25511770 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
25511796 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
25511814 CTAGGCCAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAT
Found at i:25512299 original size:26 final size:26
Alignment explanation
Indices: 25512263--25512315 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25512253 CTGGTCTGAT
*
25512263 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25512289 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25512315 C
1 C
25512316 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25512994 original size:26 final size:26
Alignment explanation
Indices: 25512955--25513005 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
25512945 GGTCTGATCC
* *
25512955 TAGACTGGGAATGAATTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
25512981 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
25513006 CTAAGTCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:25513932 original size:26 final size:26
Alignment explanation
Indices: 25513903--25513955 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25513893 CCGATCCGAT
*
25513903 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAAACTGGAAATGAACTCCGTATG
**
25513929 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGAAATGAACTCCGTATG
25513955 C
1 C
25513956 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGAAATGAACTCCGTATG
Found at i:25514297 original size:26 final size:25
Alignment explanation
Indices: 25514268--25514319 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
25514258 CCGATCCGAT
25514268 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACT-CGTATG
* *
25514294 CTTAGATTGGGGATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCGTATG
25514319 C
1 C
25514320 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:25515684 original size:158 final size:157
Alignment explanation
Indices: 25515393--25515891 Score: 481
Period size: 158 Copynumber: 3.2 Consensus size: 157
25515383 GCTCCATATG
* * *
25515393 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * * * *** *
25515458 CGGCTGGAGAGGCAGAATGCGCAAGCTGGGGATTGACCCAATCCCTCCTACGTGCTATCGATCTC
66 CGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGGTTCCCT-CTACGTGCTGTCGATCTC
25515523 GCTGCTGCAACCCTCGGTTCGGTCCGAT
130 GCTGCTGCAACCCTCGGTTCGGTCCGAT
* * * * * *
25515551 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACACATGAAACGAGCGTGTGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * * * *
25515615 CCGACTGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTTCCCTCTGCGTGTTGCCGATCC
65 CCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-GGTTCCCTCTACGTGCTGTCGATCT
** * *
25515680 CGCTGCCACAACCCTCGG-TCTGG-CTGGGT
129 CGCTGCTGCAACCCTCGGTTC-GGTC-CGAT
* * *
25515709 CTTAAACATGGAATGAGCTCCGTATGCCTAAGCCAACCCACGAAACG-GACGTGTGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGTGGGCGCTCAG
* * * * * * *
25515773 CTGA-TCGGAGAGGCAGAATGTGTAAGCCGGGGATCGGCCCGGTCCCCCCTACATGCTGTTGATC
65 CCGACT-GGAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCGGTTCCCTCTACGTGCTGTCGATC
* * * *
25515837 TTGCTG-TCGCAACCCTCGATTCGATTCGAT
128 TCGCTGCT-GCAACCCTCGGTTCGGTCCGAT
*
25515867 CTTAGAC-TGGGAATGAACTTCGTAT
1 CTTAGACAT-GGAATGAACTCCGTAT
25515892 ACTTAGAATG
Statistics
Matches: 269, Mismatches: 60, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 7 0.03
158 252 0.94
159 10 0.04
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
CGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGGTTCCCTCTACGTGCTGTCGATCTCG
CTGCTGCAACCCTCGGTTCGGTCCGAT
Found at i:25516619 original size:26 final size:26
Alignment explanation
Indices: 25516590--25516642 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25516580 ACGATCTGAT
* *
25516590 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25516616 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25516642 C
1 C
25516643 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25516693 original size:355 final size:354
Alignment explanation
Indices: 25515685--25516710 Score: 1116
Period size: 355 Copynumber: 2.9 Consensus size: 354
25515675 GATCCCGCTG
** *
25515685 CCACAACCCTCGGTCTGGCTGGGTCTTAAACATGGAATG-AGCTCCGTATGCCTAAGCCAACCCA
1 CCACAACCCTCGGTCCAGCTGGGTCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCA
* * *
25515749 CGAAACG-GACGTGTGGGTGCTCAG-CTGATCGGAGAGGCAGAATGTGTAAGCCGGGGATCGGCC
65 CGAAACGAG-CGTGCGGGCGCTCAGTC-GATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCC
* * * * * *
25515812 CGGTCCCCCCTACATGCTGTTGATCTTGCTGTCGCAACCCTCGATTCGAT-TCGATCTTAGACTG
128 CGGTCCCCTCTACGTGATG-TGATCCTGCTGTCGCAACCCTCGATACGATCT-GATCTTAGATTG
* * * *
25515876 GGAATGAACT-TCGTATACTTAGAATGGGGGTGAACTCTGTATGCCTAAGTCAACTCACGAAACG
191 GGAATGAACTCT-GTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACG
*
25515940 AGCATGCGGGCGCTCAGTTGGCGGAAGAGGCCAGCCGAAGAGGCATAATGCACAAGTCGAGGATC
255 AGCATGCGGGCGCTCAG-T--C----GA-GCCA---G-AGAGGCATAATGCGCAAGTC-AGGATC
* * * * *
25516005 AGTCCGATCCCCCTATGCGTGCTGTCTATCCCGCTATCGGTCTTGCTA
307 AGCCCGATCCCCCTATGCATGCTGCCTATCCCGCTATCGGTCATACTA
* * * *
25516053 CCACAACTCTCAGT-CTGACTAGGTCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCA
1 CCACAACCCTCGGTCCAG-CTGGGTCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCA
* * * * *
25516117 TGAAATGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCATAATGCGTAAGCCAGGGATCGGCCCG
65 CGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCG
* * * ** * * * * ** *
25516182 ATCCACCT-TGCGTGTTGTCGATCCTGCTACCACAACCCTCAATCCGGTCCAATCTTGGATTGGG
130 GTCC-CCTCTACGTGATGT-GATCCTGCTGTCGCAACCCTCGATACGATCTGATCTTAGATTGGG
* * * * *
25516246 AATGAACTCCGTCTGCTTAGACTGGGGATGATCTCTGTATGCCTAAGTCAACCCACAAAATGAGC
193 AATGAACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * *
25516311 GTACGGGCGCTCAGTC-AGTCGGAGAGGCATAATGCGCAAGTCAGGTATCAGCCCGGTCCCTCTC
258 ATGCGGGCGCTCAGTCGAGCCAGAGAGGCATAATGCGCAAGTCAGG-ATCAGCCCGATCCCCCTA
** *
25516375 TGCATGCTGCCTATCTTGCTATTGGTCATACTA
322 TGCATGCTGCCTATCCCGCTATCGGTCATACTA
* *
25516408 CCACAACCCTCGGTCCAGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCAGCTGGGTCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCAC
* ** * *
25516473 GAAACGAGCGTGCGGGCACTCAGTCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGTCTGG
66 GAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGG
* *
25516538 TCCCCTCTACGTGATGCTGATCCTACTGTCGCAACCCTTGATACGATCTGATCTTAGATTGGGAA
131 TCCCCTCTACGTGATG-TGATCCTGCTGTCGCAACCCTCGATACGATCTGATCTTAGATTGGGAA
* *
25516603 TGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTAT
195 TGAACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCAT
* ** *
25516668 GCTGGCGCTCAGTCGA-CCAGAGAGGCAGGATGCGCAAGCCAGG
260 GCGGGCGCTCAGTCGAGCCAGAGAGGCATAATGCGCAAGTCAGG
25516711 GATCGAATGG
Statistics
Matches: 545, Mismatches: 100, Indels: 39
0.80 0.15 0.06
Matches are distributed among these distances:
354 6 0.01
355 306 0.56
356 5 0.01
359 2 0.00
360 1 0.00
365 1 0.00
367 3 0.01
368 216 0.40
369 5 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (354 bp):
CCACAACCCTCGGTCCAGCTGGGTCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGG
TCCCCTCTACGTGATGTGATCCTGCTGTCGCAACCCTCGATACGATCTGATCTTAGATTGGGAAT
GAACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATG
CGGGCGCTCAGTCGAGCCAGAGAGGCATAATGCGCAAGTCAGGATCAGCCCGATCCCCCTATGCA
TGCTGCCTATCCCGCTATCGGTCATACTA
Found at i:25517617 original size:26 final size:27
Alignment explanation
Indices: 25517579--25517633 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
25517569 ATCTGATCTT
25517579 AGACTAGGAATGAACTCCATATG-CTA
1 AGACTAGGAATGAACTCCATATGCCTA
* *
25517605 AGACTGGGGATGAACTCCATATGCCTA
1 AGACTAGGAATGAACTCCATATGCCTA
25517632 AG
1 AG
25517634 TCAACCCATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.22
Consensus pattern (27 bp):
AGACTAGGAATGAACTCCATATGCCTA
Found at i:25518280 original size:367 final size:368
Alignment explanation
Indices: 25517512--25518405 Score: 1062
Period size: 367 Copynumber: 2.4 Consensus size: 368
25517502 CGCAAGTCGA
* * * * * * * *
25517512 GGATCAGCTTGGTCCCCCCTACGTGCTGCCGATCCTACTGTCACAACCCACAATTCGATCTGATC
1 GGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATCCGATCTGATC
*
25517577 TTAGACTAGGAATGAACTCCATATGCTAAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCA
66 TTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCA
* * * *
25517642 TGAAACGAGCGTGCGGGCACTCAGCCGACCGAAAAGCTCGGCCTGAGAGGCATAATGCACAAGCT
131 TGAAACGAGCGTGCAGGCACTCAGCCGACCGAAAAGCTCGACCTGAAAGGCATAATGCACAAGCC
* * * *
25517707 GGGGATCAGCCTGGTCCCCCTCTGCATGCTATCGATCCTGCTGTCGGTCCTGCTGCCACGACCCT
196 GGGGATCAGCCTGGTCCCCCTCTACATGCTATCGATCCTGCTGTCGGTACTGCTACCACAACCCT
* * *
25517772 CAATCCGACTGGGGCTTACACATGGAATGTACTCCGTATACCTAAGCCAACCCACAAAACGAACG
261 CAATCCGACTAGGGCTTACACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAAAGAACG
* * ** *
25517837 TGCAGACGCTCAGTCGATCGGAAAGGTAGAATGAACAAGCCGG
326 TACAGACGCTCAGCCGATCGGAAAGCCAGAATGAACAAGCCAG
* * * * * * * *
25517880 GGATCGACCCGGT-CCCCTTGTGTCCTATCGATCCTGCTG-CTGCAACCCTCGATCCGATCCGAT
1 GGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTACTGTC-GCAACCCTCGATCCGATCTGAT
* * **
25517943 CTTAGACTAGGAATGAACTCCGTGTGCTTAGACTAAGGATGAACTCCATATGCCTAAGTCAACCC
65 CTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCC
* * * * * *
25518008 ACGAAACGAGCGTGCAGGCACTCAGTCGATCGGAGAGGC-CGACC-GAAAAGGCATAATGCGCAA
130 ATGAAACGAGCGTGCAGGCACTCAGCCGA-CCGAAAAGCTCGACCTG-AAAGGCATAATGCACAA
* * * *
25518071 GCCGGGGATTAGCTTGGT-CCCCTCTACGTGCTGTCGATCCTGCTG-CTGGTACTGCTACCACAA
193 GCCGGGGATCAGCCTGGTCCCCCTCTACATGCTATCGATCCTGCTGTC-GGTACTGCTACCACAA
** * * * * * *
25518134 CCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACAAAAAG
257 CCCTCAATCCGACTAGGGCTTACACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAAAG
** * * * * * **
25518199 AGTGTACGGGCGCTTAGCCGATCGGAGAGCCAGCATGTGCAAGCCAG
322 AACGTACAGACGCTCAGCCGATCGGAAAGCCAGAATGAACAAGCCAG
*
25518246 GGATCGGCCTGGTCCCCCCTGCATGCTGTCGATCCTACTGTCGCAACCCTCGATCCGATCTGATC
1 GGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATCCGATCTGATC
* ** *
25518311 TTAGACTAGGAATAAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGGCTAAGTCAACCCA
66 TTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCA
* * *
25518376 TGAAATGAGTGTGCAGGCGCTCAGCCGACC
131 TGAAACGAGCGTGCAGGCACTCAGCCGACC
25518406 AAAGGGACAG
Statistics
Matches: 433, Mismatches: 87, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
365 1 0.00
366 138 0.32
367 278 0.64
368 16 0.04
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (368 bp):
GGATCGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATCCGATCTGATC
TTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCA
TGAAACGAGCGTGCAGGCACTCAGCCGACCGAAAAGCTCGACCTGAAAGGCATAATGCACAAGCC
GGGGATCAGCCTGGTCCCCCTCTACATGCTATCGATCCTGCTGTCGGTACTGCTACCACAACCCT
CAATCCGACTAGGGCTTACACATGGAATGAACTCCGTATACCTAAGCCAACCCACAAAAAGAACG
TACAGACGCTCAGCCGATCGGAAAGCCAGAATGAACAAGCCAG
Found at i:25519870 original size:720 final size:719
Alignment explanation
Indices: 25518427--25520522 Score: 3277
Period size: 720 Copynumber: 2.9 Consensus size: 719
25518417 ATGCCGATGC
* *
25518427 CATATTTCTACCATGCCGATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCCTAAGCCT
1 CATATTTCTGCCATGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCT
* * * *
25518492 TCATGTGAAGTTTCATGGCAAGACAACCCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACG
66 TCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAG
*
25518557 GTTCGAGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCACCAAATTTGGTAGAGGAGATCCTT
131 GTTCGAGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCACCAAATTTGGTAGAGGTGATCCTT
* *
25518622 GTATTTTTTTTGGCATGCATAAAAAAATGCAGCTAAAAATTCGAAGTGGAGAAGATTTTGTGACC
196 GTATTTTTTTTGGCATGCACAAAAAAATGCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACC
* *
25518687 GTTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAATATCTC
261 GTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
*
25518752 AAATGCTCTTTAAGGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGG
326 AAATGCTCTTTAAGGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * *
25518817 CCAAGTACCAGCACCCATCACACATCATGTACGCA-CCCCCGGCCCCCCCAATCGTCGAAACCTC
390 CCAAGTACCAGCACCCATCGCACATCATGTGCACACCCCCCGG-CCCCCCAATCGTCGGAACCCC
* * *
25518881 CAATGCTGCCA-GTTAGGCTCTCCGGCGATGCTCCAACGATGGTGCCCTGGGCAAAAAAAATGCG
454 CAATGCCG-CAGGTTAGGCTCTCCAGCGATGCTCCAACGATGGTGCCC-CGGCAAAAAAAATGCG
* *
25518945 GCACCAGCACATGCCCGAGCCCAGCTTGTGCACCGTGGCTCAAAATCTTAGATTGGGAATGACCT
517 GCACCAGCACATGCCTGAGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGATTGGGAATGACCT
* * *
25519010 CCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACAAAATGAGCGTGCGGGC
582 CTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGC
*
25519075 ACTCAACCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCTAACAGGTGGTAGGTGGCTTCAAG
647 ACTCAACCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGAACAGGTGGTAGGTGGCTTCAAG
25519140 CACATCTT
712 CACATCTT
* *
25519148 CATATTTCTGCCATCCCGATGTCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCT
1 CATATTTCTGCCATGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCT
*
25519213 TCATGTGAAGTTTCGTGGCAAGATGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAG
66 TCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAG
* *
25519278 GTTTGAGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCACAAAATTTGGTAGAGGTGATCCTT
131 GTTCGAGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCACCAAATTTGGTAGAGGTGATCCTT
25519343 GTATTTTTTTTGGCATGCACAAAAAAATGCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACC
196 GTATTTTTTTTGGCATGCACAAAAAAATGCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACC
*
25519408 TTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
261 GTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
*
25519473 AAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
326 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
25519538 CAAGTTCCAGCACCCATCGCACATCATGTGCACACCCCCCGGCCCCCCAATCATCGGAACCCCCA
391 CAAGTACCAGCACCCATCGCACATCATGTGCACACCCCCCGGCCCCCCAATCGTCGGAACCCCCA
** * *
25519603 ATGCCGTTGGTTAGGCTCTCCAGCGATGCGCCAGCGATGGTGCCCCGGCCAAAAAAAATGCGGCA
456 ATGCCGCAGGTTAGGCTCTCCAGCGATGCTCCAACGATGGTGCCCCGG-CAAAAAAAATGCGGCA
*
25519668 CCAGCACATGCCTGAGCCCAGCATGTGCACCGTGGCTCAAAATATTAGATTGGGAATGACCTCTG
520 CCAGCACATGCCTGAGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGATTGGGAATGACCTCTG
*
25519733 TATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCACT
585 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCACT
* * * *
25519798 CAACCGGTCGGAGAGGTAAAATGCGCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCAC
650 CAACCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGAACAGGTGGTAGGTGGCTTCAAGCAC
25519863 ATCTT
715 ATCTT
* ** *
25519868 CATATTTTTGCTGTGCCGATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCT
1 CATATTTCTGCCATGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCT
*
25519933 TCATGTGATGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACA
66 TCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-A
* * *
25519998 -GTTCAAGATTTTTTTAAATTTTTTTAGAAAGAGTTTTGTCACCAAATTTGGTAGAGCTGATCCT
130 GGTTCGAGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCACCAAATTTGGTAGAGGTGATCCT
** *
25520062 TGTATTTTTTTTGGTGTGCACCAAAAAATGCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGAC
195 TGTATTTTTTTTGGCATGCACAAAAAAATGCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGAC
*
25520127 CGTTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
260 CGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
* * * * *
25520192 TAAATGTTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCGATATAAGGG
325 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
25520257 -CAATGTACCAGCACCCATCGAACATCATGTGCGCACACCCCCCGACCCCTCCAATCGTCGGAAC
390 CCAA-GTACCAGCACCCATCGCACATCATGT--GCACACCCCCCGGCCCC-CCAATCGTCGGAAC
25520321 CCCCAATGCCGCAGGTTAGGCTCTCCGACGATGCTCTGACGATGCTCCAACGATGGTGCCCCAGG
451 CCCCAATGCCGCAGGTTAGGCTCT-C--C-A------G-CGATGCTCCAACGATGGTGCCCC-GG
* * *
25520386 CAAAAAAAATGCGGCACCAGCACATG-CTCGAGCCCAGTATGTGGACCATGGCTCAAAATCTTAG
504 CAAAAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCACCGTGGCTCAAAATCTTAG
* * * * * *
25520450 ATTAGGAATGAGCT-TCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCGACCCACGA
568 ATTGGGAATGACCTCT-GTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGA
25520514 AACGAGCGT
632 AACGAGCGT
25520523 ATAGGCACTC
Statistics
Matches: 1265, Mismatches: 88, Indels: 31
0.91 0.06 0.02
Matches are distributed among these distances:
719 5 0.00
720 724 0.57
721 334 0.26
722 16 0.01
723 35 0.03
724 1 0.00
726 1 0.00
727 1 0.00
733 4 0.00
734 142 0.11
735 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (719 bp):
CATATTTCTGCCATGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCT
TCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAG
GTTCGAGATTTTTTAAAATTTTTTTAGAAAGAGTTTTGTCACCAAATTTGGTAGAGGTGATCCTT
GTATTTTTTTTGGCATGCACAAAAAAATGCAGCTAAAAACTCGAAGTGGAGAAGATTTTGTGACC
GTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCACACCCCCCGGCCCCCCAATCGTCGGAACCCCCA
ATGCCGCAGGTTAGGCTCTCCAGCGATGCTCCAACGATGGTGCCCCGGCAAAAAAAATGCGGCAC
CAGCACATGCCTGAGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGATTGGGAATGACCTCTGT
ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCACTC
AACCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGAACAGGTGGTAGGTGGCTTCAAGCACA
TCTT
Found at i:25520921 original size:158 final size:157
Alignment explanation
Indices: 25520470--25520971 Score: 422
Period size: 158 Copynumber: 3.2 Consensus size: 157
25520460 AGCTTCATAT
* * ** *
25520470 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAACGAGCGTATAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * * *
25520535 TCGATCGGAGAGGCAGAA-GAATAAGCTGGGGATCGACCCAGTCCCCCCCTGTGTGCTGTCGATC
66 CCGATCCGAGAGGCAGAATGCACAAGCCGAGGATCG-CCCGGT-CCCCCCTGCGTGCTGTCGATC
* * ** *
25520599 CTGCTACCACAACCCTCGGTCTGGTTTGA
129 CTACTGCCACAACCCTCGGTCTGACTGGA
* * * * * *
25520628 TCTTAGA-TTGGGAATGAACTCCGC-ATGCGTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCC-CTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTC
* * * * * * * * *
25520691 AGCTGA-CCGAAGAGGCATAATGCACAAGCCGAGAATCGGCCGATCCCCCTCTACGTGTTGCCGG
64 AGCCGATCCG-AGAGGCAGAATGCACAAGCCGAGGATCGCCCGGTCCCCC-CTGCGTGCTGTCGA
* * * *
25520755 TCCCACTGCCACAACCCTTGGTTTGACTGGG
127 TCCTACTGCCACAACCCTCGGTCTGACTGGA
* * * * *
25520786 GCTTAAACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * *
25520851 CCGATCTGAGAGGCAGAATGCACAAGCCGAGGATAAGCCCGGTCCCCCCTGCGTGCTATCGATCC
66 CCGATCCGAGAGGCAGAATGCACAAGCCGAGGAT-CGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * *
25520916 TACTG-CAGTAACCCTCGGTCTG-GTCCGA
130 TACTGCCA-CAACCCTCGGTCTGACT-GGA
* * *
25520944 TCTTAGACAGGGAATGAACTCCGTATGC
1 GCTTAGACATGGAATGAACTCCCTATGC
25520972 TTAGCCTAGG
Statistics
Matches: 261, Mismatches: 72, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
157 12 0.05
158 224 0.86
159 25 0.10
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGATCCGAGAGGCAGAATGCACAAGCCGAGGATCGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
ACTGCCACAACCCTCGGTCTGACTGGA
Found at i:25520974 original size:26 final size:26
Alignment explanation
Indices: 25520945--25520997 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25520935 CTGGTCCGAT
25520945 CTTAGAC-AGGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
25520971 CTTAGCCTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
25520997 C
1 C
25520998 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:25522716 original size:26 final size:26
Alignment explanation
Indices: 25522675--25522727 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25522665 CCGGTCTGAT
*
25522675 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25522701 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
25522727 C
1 C
25522728 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25523439 original size:26 final size:26
Alignment explanation
Indices: 25523410--25523459 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
25523400 CCGGTTCGAT
25523410 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25523436 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
25523460 AGCCTAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25523481 original size:368 final size:368
Alignment explanation
Indices: 25522653--25523856 Score: 1638
Period size: 368 Copynumber: 3.3 Consensus size: 368
25522643 TCCTGCTGCT
* *
25522653 GCAACCCTCGGTCCGG-TCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGGATGA
1 GCAACCCTCGATCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGA
* * * * * *
25522717 ACTCCGTATGCCTAAGTCAACCC-TCGAAACAAGCATACGGGCGCTCAGCCGGCCGGAGAGGCCG
65 ACTCCGTAAGCCTAAGTCAACCCAT-GAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCCG
* ** * * ** * * * *
25522781 GTTAGAGAGGCATAATACGCAAGTCAAGGATCAGCTC-GATCCCCCTCTGCGTGCTGTTGATCCC
129 ATCGGAGAGGCATAATGCACAAGTCGGGGATCAACCCAG-TCCCCCTCTGCGTGCTATCGAT-CC
* * * * * * * * * * *
25522845 GTGGT--TGGTCCT-ACTACCATAACCCCCTGTCCGACTGGGGCTTAGACGTGGAATGTACTCCG
192 -TGCTACCGATCCTGA-TGCCACAACTCTCGGTTCGGCTGGGGCTTAGACATGGAATGTACTCCG
* * * * * * * * **
25522907 TATGCCTAAGCCAACCCAT-GAAACGAGCGTGCGGGCGCTTAG-TCGGCCCGAGAGGCAAAATGT
255 TATGCCTAAGCCGACCC-TGGAAATGAGCATGCTGGCGCTCAGCT-GGTCGGAGAGGTAAAATAC
** * * * * * * * **
25522970 GCAAGT-CG-GGTAT-CGACTGATCCCCACTACGTGCTACCGATCCTGCTGTC
318 GCAA-TCCGAGG-ATCCCTCTGGTCCCCCCTACGTGTTGCCAATCTTACTACC
* * * * *
25523020 GCAACCCTCGATCCAGTCCAATCTTGGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
1 GCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAA
25523085 CTCCGTAAGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCCGAT
66 CTCCGTAAGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCCGAT
*
25523150 CGGAGAGGCATAATGCACAAGTCGGGGATCATCCCAGTCCCCCTCTGCGTGCTATCGATCCTGCT
131 CGGAGAGGCATAATGCACAAGTCGGGGATCAACCCAGTCCCCCTCTGCGTGCTATCGATCCTGCT
25523215 ACCGATCCTGATGCCACAACTCTCGGTTCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCC
196 ACCGATCCTGATGCCACAACTCTCGGTTCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCC
25523280 TAAGCCGACCCTGGAAATGAGCATGCTGGCGCTCAGCTGGTCGGAGAGGTAAAATACGCAATCCG
261 TAAGCCGACCCTGGAAATGAGCATGCTGGCGCTCAGCTGGTCGGAGAGGTAAAATACGCAATCCG
25523345 AGGATCCCTCTGGTCCCCCCTACGTGTTGCCAATCTTACTACC
326 AGGATCCCTCTGGTCCCCCCTACGTGTTGCCAATCTTACTACC
* *
25523388 GCAACCTTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
1 GCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAA
* *
25523453 CTCCGTAAGCCTAAGTTAACCCATGAAACGAGCGTGCTGGTGCTCAGCCAGCCGGAGAGGCCGAT
66 CTCCGTAAGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCCGAT
* * *
25523518 CGAAGAGGTATAATGCACAAGTCGGGGATCAACCCAGTCCCTCTCTGCGTGCTATCGATCCTGCT
131 CGGAGAGGCATAATGCACAAGTCGGGGATCAACCCAGTCCCCCTCTGCGTGCTATCGATCCTGCT
25523583 ACCGATCCTGATGCCACAACTCTCGGTTCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCC
196 ACCGATCCTGATGCCACAACTCTCGGTTCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCC
25523648 TAAGCCGACCCTGGAAATGAGCATGCTGGCGCTCAGCTGGTCGGAGAGGTAAAATACGCAATCCG
261 TAAGCCGACCCTGGAAATGAGCATGCTGGCGCTCAGCTGGTCGGAGAGGTAAAATACGCAATCCG
25523713 AGGATCCCTCTGGTCCCCCCTACGTGTTGCCAATCTTACTACC
326 AGGATCCCTCTGGTCCCCCCTACGTGTTGCCAATCTTACTACC
25523756 GCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAA
1 GCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAA
* * *
25523821 CTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTG
66 CTCCGTAAGCCTAAGTCAACCCATGAAACGAGCGTG
25523857 TGGGCACTCA
Statistics
Matches: 753, Mismatches: 73, Indels: 21
0.89 0.09 0.02
Matches are distributed among these distances:
365 3 0.00
366 4 0.01
367 261 0.35
368 485 0.64
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (368 bp):
GCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAA
CTCCGTAAGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAGCCGGAGAGGCCGAT
CGGAGAGGCATAATGCACAAGTCGGGGATCAACCCAGTCCCCCTCTGCGTGCTATCGATCCTGCT
ACCGATCCTGATGCCACAACTCTCGGTTCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCC
TAAGCCGACCCTGGAAATGAGCATGCTGGCGCTCAGCTGGTCGGAGAGGTAAAATACGCAATCCG
AGGATCCCTCTGGTCCCCCCTACGTGTTGCCAATCTTACTACC
Found at i:25523807 original size:26 final size:26
Alignment explanation
Indices: 25523778--25523830 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25523768 CCGGTTCGAT
25523778 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
25523804 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
25523830 C
1 C
25523831 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Done.