Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 262 of 402
Found at i:25524159 original size:158 final size:159
Alignment explanation
Indices: 25523804--25524300 Score: 378
Period size: 159 Copynumber: 3.1 Consensus size: 159
25523794 ACTCCGTATG
* * * * * ** *
25523804 CTTAGACTAGGG-ATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGTGGGCACTCAG
1 CTTAGACT-GGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGGGGGCTCAC
* * * * * *** * * * * * *
25523868 CCGGTCGTAGAGGCATAATGCGCAAGCTGGGGATTATCTCGATCC-CCCTCTGCGTGCTACCGAT
65 CCGATCGAAAAGGCAGAATGAGCAAGCCAAGGATGAGCCCGATCCTCCC-CTACGTGCTGCTGAT
* * * **
25523932 CCTGCTGCCACAACCCTCGA-TC-AGGCTGGGC
129 CCTACTACCACAACCCTCGATTCGA-TCT-GAT
* * * * *
25523963 CTTAGA-TGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGGGCTCAC
1 CTTAGACTG-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGGGGGCTCAC
* * * ** * *
25524027 CCGATCGGAGAGGCAGAATGAGCAAGTCGGGGATCGA-CCTGATCC-CCCCTACGTGCTGTTGAT
65 CCGATCGAAAAGGCAGAATGAGCAAGCCAAGGAT-GAGCCCGATCCTCCCCTACGTGCTGCTGAT
* * * *
25524090 CCTACTACCATAACCTTCTATTCGGTCTGAT
129 CCTACTACCACAACCCTCGATTCGATCTGAT
* ** * * *
25524121 CTTAGACTGGGAATGAACTTCGTATGCATAAGTTAACCCACGAAACGAGCATGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGGGGGCTCACC
* * * * *
25524186 CGATCGAAAAGGCATAATGTGCAAGCCAAGGATTAGCCCGGTCCTCCTCTACGTGCTGCTGATCC
66 CGATCGAAAAGGCAGAATGAGCAAGCCAAGGATGAGCCCGATCCTCCCCTACGTGCTGCTGATCC
* * *
25524251 TACTGCCACGACCCTCGGTTCGATCTGAT
131 TACTACCACAACCCTCGATTCGATCTGAT
25524280 CTTAGACTGGGAATGAACTCC
1 CTTAGACTGGGAATGAACTCC
25524301 ATAAGCTTAG
Statistics
Matches: 268, Mismatches: 62, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 113 0.42
159 152 0.57
160 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCGGGGGCTCACC
CGATCGAAAAGGCAGAATGAGCAAGCCAAGGATGAGCCCGATCCTCCCCTACGTGCTGCTGATCC
TACTACCACAACCCTCGATTCGATCTGAT
Found at i:25524493 original size:26 final size:26
Alignment explanation
Indices: 25524464--25524516 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25524454 CCGGTTCAAT
25524464 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
* *
25524490 CTTAGATTATGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
25524516 C
1 C
25524517 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:25524860 original size:26 final size:26
Alignment explanation
Indices: 25524831--25524883 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25524821 TCGGTCCGAT
25524831 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25524857 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25524883 C
1 C
25524884 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25525228 original size:26 final size:26
Alignment explanation
Indices: 25525199--25525251 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25525189 CCGGTCAAAT
*
25525199 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
25525225 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
25525251 C
1 C
25525252 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:25525380 original size:368 final size:364
Alignment explanation
Indices: 25524326--25525640 Score: 1394
Period size: 368 Copynumber: 3.6 Consensus size: 364
25524316 GGATGAACTC
* * * * * ** * *
25524326 TGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGAGCGCTCAGCCGGTCGGAGAGTCAAAATGC
1 TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATG-
* * * * * * *
25524391 ACAAGCCGAGGATCGAC-CCAGTCTCCCTTGCATGCTGCCAATCCTACTGTTGCAACCCTCGATC
65 GCAAGCC-AGGATCGGCACGA-TC-CCCCTACATGCTGCCAATCCTACTATCGCAACCCTCGATC
* ** *
25524455 CGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTATGGATGAACTCCGTATGCCTA
127 CGG-TCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTA
* * * * *
25524520 AGTCAACCCCCGAAACGAGCATACGGGCGCTCAGTCGGTCGGAGAGGCCAACCGGAGAGGCATAA
191 AGTCAACCCACGAAACGAGCATGCGGGTGCTCAGTCGATCGGAGAGGCCAATCGGAGAGGCATAA
** * * * * *
25524585 TGTGCAAGTCAGGGATCAA-CCCGGTCCCCCTCTGTGTGCTGTCGATCCCACTACTGGTCCTGCT
256 TGCACAAGTCAGGGAT-AAGCTCGGTCCCCCTCTGTGTGCTGCCGATCCCGCTGCCGGTCCTGCT
* * * * *
25524649 ACCACAACCCTCGGTCCTG-CTAGGGCATAGACGTGGAATGTACTT
320 GCCAAAACCCTCAGTCC-GACTGGGGCTTAGACGTGGAATGTACTT
* * * * *
25524694 CGTAT-CCTAAGCTAACCCACGAAATGAGCGTTCGGGCGCTCAATCGACCGGAGAGGCAGAATGC
1 TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATG-
* ** * * * * * * *
25524758 GCAAGTCAGGGATCGGCTTGGTCCCCACTGCGTGCTGCCGATCCTACTGTCGCAACCCTTGATTC
65 GCAAGCCA-GGATCGGCACGATCCCC-CTACATGCTGCCAATCCTACTATCGCAACCCTCGATCC
*
25524823 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAA
128 GGT-CAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAA
* * ** * *** **
25524888 GTCAACCCATGAAACGAGCATGTGGGTGCTCAACCGACCGGAGAGGTTGATCAAAGAGGCATAAT
192 GTCAACCCACGAAACGAGCATGCGGGTGCTCAGTCGATCGGAGAGGCCAATCGGAGAGGCATAAT
* * * * *
25524953 GCATAAGTC-GAGGATCAG-TCCGGTCCCCCTCTGTGTGCTGCCAATCCCGCTGTCGGTCCTACT
257 GCACAAGTCAG-GGATAAGCT-CGGTCCCCCTCTGTGTGCTGCCGATCCCGCTGCCGGTCCTGCT
*
25525016 GCCATAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACTT
320 GCCAAAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACTT
* * * *
25525061 TGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGACCAGAGAGGTAGAATGT
1 TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATG-
* * * *
25525126 GCAAGCCATGGATTGGCCCGATCCCTCCTACATGTTGCCAATCCTGCTATCGCAACCCTCGATCC
65 GCAAGCCA-GGATCGGCACGATCCC-CCTACATGCTGCCAATCCTACTATCGCAACCCTCGATCC
*
25525191 GGTCAAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCTGTATGCCTAA
128 GGTC-AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAA
* * ** *
25525256 GTCAACCCACAAAACGAGCGTGCGGGTGCTCAGTCGATCAAAAAGGCCAATCGGAGAGGCATAAT
192 GTCAACCCACGAAACGAGCATGCGGGTGCTCAGTCGATCGGAGAGGCCAATCGGAGAGGCATAAT
* * *
25525321 GCACAAGTCAGGGATAAGCTCGGTCCTCCTCTACT-TGCTACCGATCCCGCTGCCGGTCCTGCTG
257 GCACAAGTCAGGGATAAGCTCGGTCCCCCTCT-GTGTGCTGCCGATCCCGCTGCCGGTCCTGCTG
*
25525385 CCAAAACCCTCAGTCCGACTGGGGCTTAGATGTGGAATGTACTCT
321 CCAAAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACT-T
** * * *
25525430 T-TATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGTGCTCAGTTGGCCGGAGAGGCAGAATGG
1 TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGG
* * * * * *
25525494 CAAGCC-GAGATCGACACGAT-CCCCTCCGTG-TGCTATCGATCCTGCTATCACAACCCTCGATC
66 CAAGCCAG-GATCGGCACGATCCCCCTACATGCTGC---CAATCCTACTATCGCAACCCTCGATC
** * * *
25525556 TAGTCTGATCTTAGACTAGGAATGGACTCCGTATGCTTAGACTGGGGATGAACT-TCGTATGCCT
127 CGGTC-AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCT-GTATGCCT
25525620 AAGTCAACCCACGAAACGAGC
190 AAGTCAACCCACGAAACGAGC
25525641 GTGCAGGCAC
Statistics
Matches: 789, Mismatches: 138, Indels: 42
0.81 0.14 0.04
Matches are distributed among these distances:
363 3 0.00
364 6 0.01
365 4 0.01
366 116 0.15
367 296 0.38
368 358 0.45
369 6 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (364 bp):
TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGG
CAAGCCAGGATCGGCACGATCCCCCTACATGCTGCCAATCCTACTATCGCAACCCTCGATCCGGT
CAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCA
ACCCACGAAACGAGCATGCGGGTGCTCAGTCGATCGGAGAGGCCAATCGGAGAGGCATAATGCAC
AAGTCAGGGATAAGCTCGGTCCCCCTCTGTGTGCTGCCGATCCCGCTGCCGGTCCTGCTGCCAAA
ACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACTT
Found at i:25525614 original size:26 final size:26
Alignment explanation
Indices: 25525565--25525617 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25525555 CTAGTCTGAT
*
25525565 CTTAGACTAGGAATGGACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
25525591 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25525617 C
1 C
25525618 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25526791 original size:26 final size:26
Alignment explanation
Indices: 25526755--25526807 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25526745 TCGATTCGAT
25526755 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25526781 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25526807 C
1 C
25526808 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25527152 original size:26 final size:26
Alignment explanation
Indices: 25527115--25527175 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
25527105 CCCTCGATCC
25527115 ACTCCG-AT-CTTAGACTAGGA-ATGA
1 ACTCCGTATGCTTAGACT-GGAGATGA
*
25527139 ACTCTGTATGCTTAGACTGGAGATGA
1 ACTCCGTATGCTTAGACTGGAGATGA
25527165 ACTCCGTATGC
1 ACTCCGTATGC
25527176 CTAAGTCAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 5 0.16
25 5 0.16
26 22 0.69
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
ACTCCGTATGCTTAGACTGGAGATGA
Found at i:25527309 original size:368 final size:367
Alignment explanation
Indices: 25526560--25527431 Score: 1004
Period size: 368 Copynumber: 2.4 Consensus size: 367
25526550 CCTCTGCGTG
* * * *
25526560 CTGCCAGTCCAGCTGCCACAA-CCTCGGTCTGACTGGGGCTTAGACATGGAATG-AGCTCCCTAT
1 CTGCCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTA-CTCCGTAT
* * * * **
25526623 GCCTAAGCCAACCCACGAAATGGGCGTACGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAG
65 GCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAG
* * * * * *
25526688 CCGAGGATCGGCTCGTTCCCCCTTCGTGCTGTCGATCCTACTGCCGTAACCCTTGGTTCGATTCG
130 CCGAGGATCGGCTCGTCCCCCCTACGTGCTGTCGATCCTACTGCCGTAACCCTTCGATCCATCCG
* *
25526753 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
195 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAAC
* * * * *
25526818 CCATTAAATGAGCGTGAGGGTGCTCAACCGGCCGAAGAGGCCAACCAGAGAGGCATAATGCACAA
260 CCATGAAACGAGCGTGAGGGAGCTCAACCAGCCGAAGAGGCCAACCAGAAAGGCATAATGCACAA
* * * *
25526883 GTCGAGGATCAGCCCAGTCCCCCTCTGCATGCTGCCGATCCCA
325 GCCGAGGATCAGCCCAGTCCCCCTCTACATACTGCCAATCCCA
* * *
25526926 CTGCCAGTCCTGCTGCCACAACCCTTGATCCGACTGGGGCTTAGATGTGGAATGTACTCCGTATG
1 CTGCCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATG
* * * *
25526991 CCTAAGCCAACCCACAAAACGAGCGTGTGGGTGCTCAACC-AGTCGGAGAGGTAGAATGCGCAAG
66 CCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGA-CCGGAGAGGCAGAATGCGCAAG
* ** *
25527055 CCGAGGATTGGC-CGGGTCCCCCCTACGTGCTGTCGATCCTGTTGTCGTAACCC-TCGATCCACT
130 CCGAGGATCGGCTC--GTCCCCCCTACGTGCTGTCGATCCTACTGCCGTAACCCTTCGATCCA-T
*
25527118 CCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTC
192 CCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTC
* * * * * * ** *
25527183 AACCCATGAAACGAGCGTGCGGGAGCTCAGCTAGTCGGAGAGGCCGA-TTGAAAAGGCATAATGT
257 AACCCATGAAACGAGCGTGAGGGAGCTCAACCAGCCGAAGAGGCCAACCAG-AAAGGCATAATGC
** * * * * * **
25527247 GTAAGCCGGGGATCAGCCC-GATCTCTCTCTACGTACTGTCAATCCTG
321 ACAAGCCGAGGATCAGCCCAG-TCCCCCTCTACATACTGCCAATCCCA
* * * * * *
25527294 CTGTCGGTGCTGCTGCCAAAACCCTCGGTCCGACAGGGGCTTAGACGTGGAATGTACTCTGTATG
1 CTGCCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATG
* * * * *
25527359 CCT-AGCCAACCCACAAAAGGAGCGTGCGGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAGT
66 CCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGC
*
25527423 CGTGGATCG
131 CGAGGATCG
25527432 AACAGGTGGT
Statistics
Matches: 420, Mismatches: 77, Indels: 17
0.82 0.15 0.03
Matches are distributed among these distances:
366 22 0.05
367 162 0.39
368 236 0.56
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (367 bp):
CTGCCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATG
CCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGC
CGAGGATCGGCTCGTCCCCCCTACGTGCTGTCGATCCTACTGCCGTAACCCTTCGATCCATCCGA
TCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACC
CATGAAACGAGCGTGAGGGAGCTCAACCAGCCGAAGAGGCCAACCAGAAAGGCATAATGCACAAG
CCGAGGATCAGCCCAGTCCCCCTCTACATACTGCCAATCCCA
Found at i:25528910 original size:26 final size:27
Alignment explanation
Indices: 25528881--25528935 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
25528871 GTTCGATCTT
*
25528881 AGACTGGGAATGAACTCCGTATG-CTA
1 AGACTGGGAATGAACTCCATATGCCTA
*
25528907 AGACTGGGGATGAACTCCATATGCCTA
1 AGACTGGGAATGAACTCCATATGCCTA
25528934 AG
1 AG
25528936 TCAACCCATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (27 bp):
AGACTGGGAATGAACTCCATATGCCTA
Found at i:25529349 original size:355 final size:354
Alignment explanation
Indices: 25528688--25529356 Score: 831
Period size: 355 Copynumber: 1.9 Consensus size: 354
25528678 CTTACTGTCG
*
25528688 GTCCTGCTGCCACAACCCTCGGTCCGACTGGGCCTTAGATGTGGAATGTACTCCGTATGCCTAAG
1 GTCCTGCTGCCACAACCCTCGATCCGACTGGGCCTTAGATGTGGAATGTACTCCGTATGCCTAAG
** ** * * * *
25528753 CCAACAACGAAACGGGCGTTCAGGCACTCAGCCAGCTAGAGAGGTAGAACGCGTAAGTCGGGGAT
66 CCAACAACGAAACAAGCGTTCAGGCACTCAGCCAGCTAGAGAGACAAAACGCGCAAGCCGAGGAT
* * * *
25528818 TAGCCCAGTCCCCCCTACGTGCTACCGATCCTGCTGCCGCAACCCTCGAACCGGTTCGATCTTAG
131 GAGCCCAGTCCCCCATACGTGCTACCGATCCTGCTGCCGCAACCCTCGAACCAGTCCGATCTTAG
*
25528883 ACTGGGAATGAACTCCGTATGCTAAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAA
196 ACTGGGAATGAACTCCGTATGCTAAGACTGCGGATGAACTCCATATGCCTAAGTCAACCCATGAA
* * * ** * *
25528948 ACGATCGTGCAGGTGCTCAGTTGATCGAAGAGGTATAATACGCAAGCTGGGGATAAGCTTGGTCC
261 ACGAGCATGCAGGCGCTCAGCCGACCGAAGAGGTAGAATACGCAAGCTGGGGATAAGCTTGGTCC
25529013 CCCTTTGTGTGCTACCGATCCCGGTGCCA
326 CCCTTTGTGTGCTACCGATCCCGGTGCCA
**
25529042 GTCCTGCTGCCACAACCCTCGATCCGGGTAGGG-CTTAGATGTGGAATGTACTCCGTATGCCTAA
1 GTCCTGCTGCCACAACCCTCGATCCGACT-GGGCCTTAGATGTGGAATGTACTCCGTATGCCTAA
* * * * * * * *
25529106 GCCAACCCATGAAACAAGCG-TCTAGGCCCTTAGCCAGTTGGAGAGACAAAATGTGCAAGCCGAG
65 GCCAA-CAACGAAACAAGCGTTC-AGGCACTCAGCCAGCTAGAGAGACAAAACGCGCAAGCCGAG
* * * * * * *
25529170 GATCGATCCGA-TCCCCCATGCGTGCTACCGATCCTGCTGTCGTAACCCTTGATCCAGTCCGATC
128 GAT-GAGCCCAGTCCCCCATACGTGCTACCGATCCTGCTGCCGCAACCCTCGAACCAGTCCGATC
* * * * * * **
25529234 TTAGATTGGGAATGAACTTCGTATGCTTAGACTGCTGATGAACTTCGTATGCCTAAGTCCCCCCA
192 TTAGACTGGGAATGAACTCCGTATGCTAAGACTGCGGATGAACTCCATATGCCTAAGTCAACCCA
* * * *
25529299 TGAAACGAGCATGCGGGCGCTCAGCCGACCGGAGAGGTAGGATGCGCAAGCTGGGGAT
257 TGAAACGAGCATGCAGGCGCTCAGCCGACCGAAGAGGTAGAATACGCAAGCTGGGGAT
25529357 CGAACGGGTG
Statistics
Matches: 261, Mismatches: 50, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
354 64 0.25
355 193 0.74
356 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (354 bp):
GTCCTGCTGCCACAACCCTCGATCCGACTGGGCCTTAGATGTGGAATGTACTCCGTATGCCTAAG
CCAACAACGAAACAAGCGTTCAGGCACTCAGCCAGCTAGAGAGACAAAACGCGCAAGCCGAGGAT
GAGCCCAGTCCCCCATACGTGCTACCGATCCTGCTGCCGCAACCCTCGAACCAGTCCGATCTTAG
ACTGGGAATGAACTCCGTATGCTAAGACTGCGGATGAACTCCATATGCCTAAGTCAACCCATGAA
ACGAGCATGCAGGCGCTCAGCCGACCGAAGAGGTAGAATACGCAAGCTGGGGATAAGCTTGGTCC
CCCTTTGTGTGCTACCGATCCCGGTGCCA
Found at i:25530239 original size:158 final size:157
Alignment explanation
Indices: 25529749--25530239 Score: 477
Period size: 158 Copynumber: 3.1 Consensus size: 157
25529739 TTAGACATGA
* * * *
25529749 AATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCAGTCGACCGGAGAG
1 AATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAG
* * * * * * * **
25529814 GTAGAATGCGTAAGTCGGGGATCGACCCAGTCCCCTCTGCGTGCTGTCGATCTTGCTATCGCAAC
66 GCAGAATGCGCAAGTCGGGGATTGACCCGGTCCCCTCTGTGTGCTGTCGATCCTACTGCCGCAAC
* * * * *
25529879 CCTTGGTCCAGTCCGATCTTAGACTGAG
131 CCTCGGTCCGGTCTGATCTTA-AATGGG
* * * * * *
25529907 AATGAACTCCGTATACATAAG-TCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCAATCGAAGA
1 AATGAACTCCGTATGCCTAAGCT-AACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGA
* * * * * * * *
25529971 GGCATAATGCACAAGCCTGGGA-TCACCTCGATCCCCCTCTGTGTGCTGTCGATCCCACTGCCAC
65 GGCAGAATGCGCAAGTCGGGGATTGACC-CGGT-CCCCTCTGTGTGCTGTCGATCCTACTGCCGC
* **
25530035 AACCTTCGGTCCGG-CTAGGGCTTAGACAT-GG
128 AACCCTCGGTCCGGTCT-GATCTTA-A-ATGGG
* * * * *
25530066 AATGTACTCCATATGCCTAAGCTATCCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAG
1 AATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAG
* * *
25530131 GCAGAATGCGCACGTCGGGGATTGGCCCGGTCCCCTCTGTGTGCTGTCGATCCTACTGCCGTAAC
66 GCAGAATGCGCAAGTCGGGGATTGACCCGGTCCCCTCTGTGTGCTGTCGATCCTACTGCCGCAAC
*
25530196 CCTCGATCCGGTCTGATCTTAAATTGGG
131 CCTCGGTCCGGTCTGATCTTAAA-TGGG
*
25530224 AATGAACTTCGTATGC
1 AATGAACTCCGTATGC
25530240 TTAGATTGGG
Statistics
Matches: 259, Mismatches: 64, Indels: 20
0.76 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 5 0.02
158 132 0.51
159 116 0.45
160 5 0.02
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (157 bp):
AATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAG
GCAGAATGCGCAAGTCGGGGATTGACCCGGTCCCCTCTGTGTGCTGTCGATCCTACTGCCGCAAC
CCTCGGTCCGGTCTGATCTTAAATGGG
Found at i:25530249 original size:26 final size:26
Alignment explanation
Indices: 25530213--25530265 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25530203 CCGGTCTGAT
*
25530213 CTTAAATTGGGAATGAACTTCGTATG
1 CTTAAATTGGGAATGAACTCCGTATG
* *
25530239 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAAATTGGGAATGAACTCCGTATG
25530265 C
1 C
25530266 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAAATTGGGAATGAACTCCGTATG
Found at i:25531851 original size:26 final size:26
Alignment explanation
Indices: 25531815--25531893 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
25531805 CTAGTCTGAT
*
25531815 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
25531841 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
25531867 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
25531893 C
1 C
25531894 CGGTCTCGGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:25532127 original size:26 final size:26
Alignment explanation
Indices: 25532086--25532138 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25532076 CTGATCTGAT
*
25532086 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACGCCGTATG
* *
25532112 CTTAGACTGGGGATGAACGCCGTATG
1 CTTAGACTGAGAATGAACGCCGTATG
25532138 C
1 C
25532139 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACGCCGTATG
Found at i:25533686 original size:26 final size:26
Alignment explanation
Indices: 25533657--25533709 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25533647 CTGGTCCAAT
*
25533657 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATAAACTCCATATG
* * *
25533683 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCATATG
25533709 C
1 C
25533710 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTCCATATG
Found at i:25533767 original size:13 final size:13
Alignment explanation
Indices: 25533749--25533773 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25533739 GCGCTCAGCT
25533749 AGCCGGAGAGGCC
1 AGCCGGAGAGGCC
25533762 AGCCGGAGAGGC
1 AGCCGGAGAGGC
25533774 ATAATACGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
AGCCGGAGAGGCC
Found at i:25534053 original size:26 final size:26
Alignment explanation
Indices: 25534024--25534079 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
25534014 CCGGTTCGAT
25534024 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25534050 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25534076 CTTA
1 CTTA
25534080 AGTTAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25534173 original size:368 final size:366
Alignment explanation
Indices: 25533472--25535208 Score: 1902
Period size: 368 Copynumber: 4.7 Consensus size: 366
25533462 CCTGATCCCA
* * ** *
25533472 CTGCCACAACCCTCGGTCGGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
* * * * * * *
25533537 CATGAAATGGGCGTGCGGGTGCTCAGTC-TTCCAGATAGGCAGAATGCGTAAGCCGGGGATCGGC
66 CACGAAACGAGCGTGCGGGTGCTCAGTCGGT-CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
* * * * * * *
25533601 TCGGTCCCCCCTACGTGTTGTCAATCCTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTG
130 TCGGT-CCCCCTGCGTGCTG-CGATCCTGCTACCGCAACCCTCGATCTGGTTCGATCTTAGACTG
* * * * *
25533666 AGAATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACTCATGAAACAA
193 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
* * ** * * *
25533731 GCGTGCAGGCGCTCAGCTAGCCGGAGAGGCC-AGCCGGAGAGGCATAATACGCAAGCCGGGGATC
258 GCGTGCGGGCACTCAGCCGGTCGGAGAGGCCGA-TCGGAGAGGCATAATGCGCAAGCCGGGGATC
* * * * * * **
25533795 AACTCGATCCCCCTCTACATGTTACCGATCCCGCTGTCGGTCCTG
322 AGCCCGATCCCCCTCTACGTGCTATCGATCCCACTACCGGTCCTG
* * * *
25533840 CTGCCACAACCCTCAGTCCGGCTGGGGCTTACACGTGGAATGTACTCCGTATGCCAAAGCCAACC
1 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
* * * * **
25533905 CACGAAATGAGCGTGCGGGTGCTTAGTCGGTCGGAGAGGTAGAATGAGCAAGTTGGGGATC-GCT
66 CACGAAACGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCT
* * *
25533969 CGGTCCCTCCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCAATCCGGTTCGATCTTAGACTGG
131 CGGTCCC-CCTGCGTGCTG-CGATCCTGCTACCGCAACCCTCGATCTGGTTCGATCTTAGACTGG
* *
25534034 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCTTAAGTTAACCCATGAAACGAG
194 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
* ** * * * * *
25534099 CGTACGGGGTGCTCAGCCGGTAGGAGAGGCCGATTGAAGAGGCATAATGCGTAA-CCTGGGGATT
259 CGTGC-GGGCACTCAGCCGGTCGGAGAGGCCGATCGGAGAGGCATAATGCGCAAGCC-GGGGATC
* * * * *
25534163 AGCCCGATCCCTCTCTGCGTGCGATCGATTCCGCT---GG---TG
322 AGCCCGATCCCCCTCTACGTGCTATCGATCCCACTACCGGTCCTG
* *
25534202 --GTCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGAATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
* * * * * *
25534265 TACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCC
66 CACGAAACGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCT
* * **
25534330 CGGTCCCCCCTGTGTGCTGCTGATCCTGCTACTGCAACCCTCGATCTAATTCGATCTTAGACTGG
131 CGGT-CCCCCTGCGTGCTGC-GATCCTGCTACCGCAACCCTCGATCTGGTTCGATCTTAGACTGG
* * * * * *
25534395 GAATGAACTCTGTACGGTAAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAG
194 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
* * * * * *
25534460 CGTGCGGGCACTCATCCGATCGGAGAGGTCGGTCGGAGAGGCATAATGCGTAAGCTGGGGATCAG
259 CGTGCGGGCACTCAGCCGGTCGGAGAGGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAG
* * * *
25534525 CCCGATCCCCCTCTGCGTGCTGTCGATCCCATTACCGGTCTTG
324 CCCGATCCCCCTCTACGTGCTATCGATCCCACTACCGGTCCTG
* * * * *
25534568 CAGCCACAACCCTTGGTCTGACAGGGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
* * ** * * * * **
25534633 CATGAAACGAGCATGCGGGCACTCTGTCAGTCGGAGAGGAAGAATGTGCAAGCCTAGGATCGGCT
66 CACGAAACGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCT
* * * * * *
25534698 CGATCTCCCCTACGTGCTACCGATCCAGCTACCGCAACCCTCGATCCGGTTTGATCTTAGACTGG
131 CGGTC-CCCCTGCGTGCT-GCGATCCTGCTACCGCAACCCTCGATCTGGTTCGATCTTAGACTGG
*
25534763 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAG
194 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
* * * * * * *
25534828 CCTGCGGGCACTTAGCAGG-CTGGAGAGGTCGGTCGGAGAGGTATAATGC-CAAGCCGAGGATCA
259 CGTGCGGGCACTCAGCCGGTC-GGAGAGGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCA
** * *
25534891 GCTTGTTCCCCCTCTACGTGCTGTCGATCCCACTACCGGTCCTG
323 GCCCGATCCCCCTCTACGTGCTATCGATCCCACTACCGGTCCTG
* * *
25534935 TTGCCACAACCCTCGGTCCGACGGGGGCTTAGACGTGGAATGTACTTCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
* * * * *
25535000 C-CTAAAACGAACGTGCGGGTGCTCAGTCGGACGGAGAGGCAGAATGCGTAAGCCGGGGATCAGC
66 CAC-GAAACGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
* * * *
25535064 CCGGTCTCCCCTGCGTGCTGCTGATCCTGCTACCACAACCCTCGATCTGGTCCAATCTTAGACTG
130 TCGGTC-CCCCTGCGTGCTGC-GATCCTGCTACCGCAACCCTCGATCTGGTTCGATCTTAGACTG
* * * * *
25535129 GGAATGAACTCTGTATACTTAGACTGGGGATGAACTCTGTATACCTAAGTCAACCCACGAAACGA
193 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
* *
25535194 GCGTACGGGCGCTCA
258 GCGTGCGGGCACTCA
25535209 ACGACCAGAG
Statistics
Matches: 1146, Mismatches: 201, Indels: 45
0.82 0.14 0.03
Matches are distributed among these distances:
360 182 0.16
361 118 0.10
362 5 0.00
363 2 0.00
365 2 0.00
366 6 0.01
367 398 0.35
368 430 0.38
369 3 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (366 bp):
CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCT
CGGTCCCCCTGCGTGCTGCGATCCTGCTACCGCAACCCTCGATCTGGTTCGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
TGCGGGCACTCAGCCGGTCGGAGAGGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCC
CGATCCCCCTCTACGTGCTATCGATCCCACTACCGGTCCTG
Found at i:25534782 original size:26 final size:26
Alignment explanation
Indices: 25534753--25534805 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25534743 CCGGTTTGAT
25534753 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25534779 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25534805 C
1 C
25534806 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25534876 original size:728 final size:729
Alignment explanation
Indices: 25533473--25535222 Score: 2056
Period size: 728 Copynumber: 2.4 Consensus size: 729
25533463 CTGATCCCAC
* * ** * *
25533473 TGCCACAACCCTCGGTCGGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCT
* * * * * * *
25533538 ATGAAATGGGCGTGCGGGTGCTCAGTC-TTCCAGATAGGCAGAATGCGTAAGCCGGGGATCGGCT
66 A-GAAACGAGCGTGCGGGTGCTCAGCCGAT-CGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCC
* * * * *
25533602 CGGTCCCCCCTACGTGTTG-TCAATCCTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTG
129 CGGTCCCCCCTGCGTGCTGCT-GATCCTGCTACCGCAACCCTCGATCTGGTCCAATCTTAGACTG
* ** * * * *
25533666 AGAATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACTCATGAAACAA
193 GGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGA
* * *
25533731 GCGTGCAGGCGCTCAGCTAGCCGGAGAGGCCAGCCGGAGAGGCATAATACGCAAGCCGGGGATCA
258 GCGTGCGGGCGCTCACCGAGCCGGAGAGGCCAGCCGGAGAGGCATAATACGCAAGCCGGGGATCA
* * * ** * *
25533796 ACTCGATCCCCCTCTACATGTTACCGATCCCGCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGG
323 ACCCGATCCCCCTCTACATGCTACCGATCCCACTACCGGTCCTGCAGCCACAACCCTCAGTCCGA
* * * * **
25533861 CTGGGGCTTACACGTGGAATGTACTCCGTATGCCAAAGCCAACCCACGAAATGAGCGTGCGGGTG
388 CAGGGGCTTACACGTGGAATGTACTCCATATGCCAAAGCCAACCCACGAAACGAGCATGCGGGCA
* * * * * ** **
25533926 CTTAGTCGGTCGGAGAGGTAGAATGAGCAAGTTGGGGATCGCTCGGTCCCTCCTGTGTGCTGTCG
453 CTTAGTCAGTCGGAGAGGAAGAATGAGCAAGCTGAGGATCGCTCGATCCCTCCTACGTGCTACCG
*
25533991 ATCCTGCTACCGCAACCCTCAATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
518 ATCCAGCTACCGCAACCCTCAATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * ** *
25534056 CTGGGGATGAACTCCGTATGCTTAAGTTAACCCATGAAACGAGCGTACGGGGTGCTCAGCCGGTA
583 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCCTACGGGGCACTCAGCAGGTA
* * * * * *
25534121 GGAGAGGCCGATTGAAGAGGCATAATGCGTAA-CCTGGGGATTAGCCCGATCCCTCTCTGCGTGC
648 GGAGAGGCCGATCGAAGAGGCATAATGC-CAAGCC-GAGGATCAGCCCGATCCCCCTCTACGTGC
* *
25534185 -GATCGATTCCGCT-GG-TG
711 TG-TCGATCCCACTCGGCTG
* *
25534202 -GTCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGAATGCCTAAGCCAACCT
1 TGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCT
* * *
25534266 ACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCC
66 A-GAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCC
* * ** * *
25534331 GGTCCCCCCTGTGTGCTGCTGATCCTGCTACTGCAACCCTCGATCTAATTCGATCTTAGACTGGG
130 GGTCCCCCCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGATCTGGTCCAATCTTAGACTGGG
* * * *
25534396 AATGAACTCTGTACGGTAAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGC
195 AATGAACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGC
* * * * * * * * *
25534461 GTGCGGGCACTCATCCGA-TCGGAGAGGTCGGTCGGAGAGGCATAATGCGTAAGCTGGGGATCAG
260 GTGCGGGCGCTCA-CCGAGCCGGAGAGGCCAGCCGGAGAGGCATAATACGCAAGCCGGGGATCAA
* * ** * * ** *
25534525 CCCGATCCCCCTCTGCGTGCTGTCGATCCCATTACCGGTCTTGCAGCCACAACCCTTGGTCTGAC
324 CCCGATCCCCCTCTACATGCTACCGATCCCACTACCGGTCCTGCAGCCACAACCCTCAGTCCGAC
* * *
25534590 AGGGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCAC
389 AGGGGCTTACACGTGGAATGTACTCCATATGCCAAAGCCAACCCACGAAACGAGCATGCGGGCAC
*
25534655 TCT-GTCAGTCGGAGAGGAAGAATGTGCAAGCCT-AGGATCGGCTCGATCTCC-CCTACGTGCTA
454 T-TAGTCAGTCGGAGAGGAAGAATGAGCAAG-CTGAGGATC-GCTCGATC-CCTCCTACGTGCTA
* *
25534717 CCGATCCAGCTACCGCAACCCTCGATCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTT
515 CCGATCCAGCTACCGCAACCCTCAATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
25534782 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCCTGC-GGGCACTTAGCAG
580 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCCTACGGGGCACTCAGCAG
* * * * ** *
25534846 GCT-GGAGAGGTCGGTCGGAGAGGTATAATGCCAAGCCGAGGATCAGCTTGTTCCCCCTCTACGT
645 G-TAGGAGAGGCCGATCGAAGAGGCATAATGCCAAGCCGAGGATCAGCCCGATCCCCCTCTACGT
25534910 GCTGTCGATCCCACTACCGGTCCTG
709 GCTGTCGATCCCACT--CGG--CTG
* *
25534935 TTGCCACAACCCTCGGTCCGACGGGGGCTTAGACGTGGAATGTACTTCGTATGCCTAAGCCAACC
1 -TGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAA--
* * *
25535000 CCTA-AAACGAACGTGCGGGTGCTCAGTCGGA-CGGAGAGGCAGAATGCGTAAGCCGGGGATCAG
63 CCTAGAAACGAGCGTGCGGGTGCTCAG-CCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGG
* *
25535063 CCCGGTCTCCCCTGCGTGCTGCTGATCCTGCTACCACAACCCTCGATCTGGTCCAATCTTAGACT
127 CCCGGTCCCCCCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGATCTGGTCCAATCTTAGACT
* * *
25535128 GGGAATGAACTCTGTATACTTAGACTGGGGATGAACTCTGTATACCTAAGTCAACCCACGAAACG
192 GGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACG
* * *
25535193 AGCGTACGGGCGCTCAACGA-CCAGAGAGGC
257 AGCGTGCGGGCGCTCACCGAGCCGGAGAGGC
25535223 AGGATGCGCA
Statistics
Matches: 854, Mismatches: 146, Indels: 37
0.82 0.14 0.04
Matches are distributed among these distances:
727 33 0.04
728 434 0.51
729 129 0.15
730 4 0.00
733 2 0.00
734 10 0.01
735 235 0.28
736 3 0.00
737 4 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (729 bp):
TGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCT
AGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCG
GTCCCCCCTGCGTGCTGCTGATCCTGCTACCGCAACCCTCGATCTGGTCCAATCTTAGACTGGGA
ATGAACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCG
TGCGGGCGCTCACCGAGCCGGAGAGGCCAGCCGGAGAGGCATAATACGCAAGCCGGGGATCAACC
CGATCCCCCTCTACATGCTACCGATCCCACTACCGGTCCTGCAGCCACAACCCTCAGTCCGACAG
GGGCTTACACGTGGAATGTACTCCATATGCCAAAGCCAACCCACGAAACGAGCATGCGGGCACTT
AGTCAGTCGGAGAGGAAGAATGAGCAAGCTGAGGATCGCTCGATCCCTCCTACGTGCTACCGATC
CAGCTACCGCAACCCTCAATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCCTACGGGGCACTCAGCAGGTAGGA
GAGGCCGATCGAAGAGGCATAATGCCAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTGTCG
ATCCCACTCGGCTG
Found at i:25535149 original size:26 final size:26
Alignment explanation
Indices: 25535120--25535172 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25535110 CTGGTCCAAT
25535120 CTTAGACTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCTGTATA
*
25535146 CTTAGACTGGGGATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCTGTATA
25535172 C
1 C
25535173 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATA
Found at i:25536248 original size:26 final size:26
Alignment explanation
Indices: 25536219--25536272 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
25536209 GGCGCTCAGT
*
25536219 CGACCGGAGAGGCAGAATGCGCAAGC
1 CGACCAGAGAGGCAGAATGCGCAAGC
* *
25536245 CGACCAGAGAGGCAGGATTCGCAAGC
1 CGACCAGAGAGGCAGAATGCGCAAGC
25536271 CG
1 CG
25536273 GGGATCGAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.37, T:0.06
Consensus pattern (26 bp):
CGACCAGAGAGGCAGAATGCGCAAGC
Found at i:25537306 original size:159 final size:156
Alignment explanation
Indices: 25536912--25537382 Score: 377
Period size: 159 Copynumber: 3.0 Consensus size: 156
25536902 AGCTTCTTAT
* * *
25536912 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAGGA-CGTACGGGTGCTCAG
* *
25536977 CCGACCGGAGAGGCAGAATCCACAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
65 CCGACC-GAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
* * *
25537042 TACTTTCGTAACCCTCGGTCTGGTCCAA
129 TACTCTCGCAACCCTCAGTCTGGTCCAA
* * * ** * * *
25537070 TCTTAGAC-TGGCAATGAACTCTGTAAGCATAAATCAACCCACGAAACGAACGTACGGGCGCTGA
1 GCTTAGACATGG-AATGAACTCTGTATGCCTAAGCCAACCCACGAAA-GGACGTACGGGTGCTCA
* ** * * **
25537134 ACCGGTCGAAGAGGCATAATGCTCAAGCCGGGGATC-AGCCC-AGTCCCCCTCTGTGTGCTGTCG
64 GCCGACCG-AGAGGCAGAATGCACAAGCCGGGGATCGA-CCCGA-TCCCCC-CTACGTGCTGTC-
***
25537197 GA--CTCACTC-CTGCAACCCTCAGTCTGG-CTGGG
124 GATCCT-ACTCTC-GCAACCCTCAGTCTGGTC-CAA
* **
25537229 GCTTAGACATGGAATGAGCTCACTATGCCTAAGCCAACCCACGAAAGGGACGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAA-GGACGTACGGGTGCTCAG
** * ** * *
25537294 CCGACCAGAGAGGCAGAATGCGTAA-CTCAGGGATCGGTCCGGT-CCCCCTGCGTGCTGTCGATC
65 CCGACC-GAGAGGCAGAATGCACAAGC-CGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATC
* * *
25537357 CTGCTAC-CGCAACCCTCGGTCCGGTC
128 CTACT-CTCGCAACCCTCAGTCTGGTC
25537383 TGATCTTAGA
Statistics
Matches: 242, Mismatches: 52, Indels: 38
0.73 0.16 0.11
Matches are distributed among these distances:
156 2 0.01
157 33 0.14
158 97 0.40
159 104 0.43
160 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAGGACGTACGGGTGCTCAGC
CGACCGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTA
CTCTCGCAACCCTCAGTCTGGTCCAA
Found at i:25537783 original size:26 final size:26
Alignment explanation
Indices: 25537754--25537806 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25537744 CCAGTCCGAT
25537754 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25537780 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25537806 C
1 C
25537807 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25537804 original size:367 final size:368
Alignment explanation
Indices: 25537321--25538212 Score: 1012
Period size: 367 Copynumber: 2.4 Consensus size: 368
25537311 ATGCGTAACT
* * * * *
25537321 CAGGGATCGGTCCGGT-CCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCTG
1 CAGGGATCGGTCCGATCCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCTTCGATCC-GTCCG
* * * *
25537385 ATCTTAGACTATGAATTAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAAC
65 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * * * *
25537450 CCATGAAACGAGCATGCGGGCGCTCAGTCGGCCGGAGAGGTCGGCCAGAGAGGCATAATGCA-TA
130 CCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAAAGGCCGACCAGAGAGGCATAATGCACCA
** * ** * *
25537514 AGCCAAGGATCAGCCCGGTCTCC-CTCTGTGTGCTGTTGA-CCTCACTACCGGACCT-ACTGCCA
195 A-CCAAGGATCAAACCGATC-CCTCTCTACGTGCTGTCGATCC-CACTACCGG-CCTCACTACCA
*
25537576 CAACCCTCAGTTCGA-CAGGGGCTTAAACGTGGAATGTACTCCGTACAC-C-TATGCCAAC-CCA
256 CAACCCTC-GGTCGAGCAGGGGCTTAAACGTGGAATGTACTCCGTACACTCTTA-GCCAACTCC-
* ** ** * * *
25537637 CGACACGAGCGTATGGGCGCTCAGCCGGTCGGAGAGGTAGACT-CGCAAGC
318 CGAAACGAGCGTACAGGCGCTCAGCCGACCGAAAAGGTAGAATACGCAAGC
* * * * *
25537687 CGGGGATCGGTCCGATCCCCCCTGCATGCTACCGATCCTGTTACCGTAACCTTCGATCCAGTCCG
1 CAGGGATCGGTCCGATCCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCTTCGATCC-GTCCG
*
25537752 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
65 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * *
25537817 CCATGAAACGAGCGTGTGGGCGCTCAGCCAGTCGGAAAGGCCGACCGGAGAGGCATAATGCACCA
130 CCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAAAGGCCGACCAGAGAGGCATAATGCACCA
* ** * * * * *
25537882 ATCGGGGATCAAACTGATCCCTCTCTACGTGTTGTCGATCCCGCTACCGGTCTCGCTACCACAAC
195 ACCAAGGATCAAACCGATCCCTCTCTACGTGCTGTCGATCCCACTACCGGCCTCACTACCACAAC
* * * ** *
25537947 CCTCGGTCTAGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCTCTTAGCCAACTGCCGAAACG
260 CCTCGGTCGAGCAGGGGCTTAAACGTGGAATGTACTCCGTACACTCTTAGCCAACTCCCGAAACG
* * *
25538012 AGCGTGCAGGCTCTTAGCCGACCGAAAAGGTAGAATACGCAAGC
325 AGCGTACAGGCGCTCAGCCGACCGAAAAGGTAGAATACGCAAGC
* * * * * *
25538056 CAGGGATCAGCCCGATCCCCCCTGTGTTCTATCGATCCTGCTACCGCAACCTTCAATTCGATCCG
1 CAGGGATCGGTCCGATCCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCTTCGATCCG-TCCG
* *
25538121 ATCTTAGACTAGGAATGAACTCTGTATGCTTAGGCTGGGGATGAACTCCGTATGCCTAAGTCAAC
65 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* *
25538186 CCACGAAATGAGCGTGCGGGCGCTCAG
130 CCATGAAACGAGCGTGCGGGCGCTCAG
25538213 ATGACTAGAG
Statistics
Matches: 439, Mismatches: 76, Indels: 19
0.82 0.14 0.04
Matches are distributed among these distances:
366 22 0.05
367 225 0.51
368 44 0.10
369 148 0.34
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (368 bp):
CAGGGATCGGTCCGATCCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCTTCGATCCGTCCGA
TCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
CATGAAACGAGCGTGCGGGCGCTCAGCCAGCCGGAAAGGCCGACCAGAGAGGCATAATGCACCAA
CCAAGGATCAAACCGATCCCTCTCTACGTGCTGTCGATCCCACTACCGGCCTCACTACCACAACC
CTCGGTCGAGCAGGGGCTTAAACGTGGAATGTACTCCGTACACTCTTAGCCAACTCCCGAAACGA
GCGTACAGGCGCTCAGCCGACCGAAAAGGTAGAATACGCAAGC
Found at i:25541517 original size:158 final size:158
Alignment explanation
Indices: 25541187--25541548 Score: 336
Period size: 158 Copynumber: 2.3 Consensus size: 158
25541177 AGCTTCGTGT
* * * *
25541187 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACGCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * *
25541252 TCGATCGGAAAGGCAGAATGCACAAGCCGAGGATCGACCAGGTCCCCCCTGCGTGCTATCGATCC
66 TCCAGCGGAAAGGCAGAACGCACAAGCCGAGGATCGACCAGGTCCCCCCTGCGTGCTACCGATCC
* * * *
25541317 TACTGCCACAACCCTTGGTCTGATTCGA
131 CACTGCCACAACCCTCGATCTGACTCGA
* * * * * * *
25541345 TCTTAAAC-TGGGAATGAACTCCGTATGGATAAGTCAACCCATGAAACGAGCGTGCGGG-ATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * * *
25541408 A-CCAGCTGAAGAGGCATAACGCGCAAGCCGGGGATTGACCCGGTCCTCCTCTGCGTGTTACCGA
65 ATCCAGCGGAA-AGGCAGAACGCACAAGCCGAGGATCGACCAGGTCC-CCCCTGCGTGCTACCGA
** * * *
25541472 TCCCGTTGCCACAACCCTCGATCTGGCTGGG
128 TCCCACTGCCACAACCCTCGATCTGACTCGA
* * * *
25541503 GCTTAGACATGGAATGAGCT-CGCTATGCCTAAGCGAACCTACGAAA
1 GCTTAGACATGGAATGAACTCCG-TATGCATAAGCCAACCCACGAAA
25541549 TGGGCGTACG
Statistics
Matches: 158, Mismatches: 41, Indels: 10
0.76 0.20 0.05
Matches are distributed among these distances:
156 6 0.04
157 35 0.22
158 116 0.73
159 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
TCCAGCGGAAAGGCAGAACGCACAAGCCGAGGATCGACCAGGTCCCCCCTGCGTGCTACCGATCC
CACTGCCACAACCCTCGATCTGACTCGA
Found at i:25541698 original size:26 final size:26
Alignment explanation
Indices: 25541662--25541714 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25541652 CTAGTCCGAT
*
25541662 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25541688 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25541714 C
1 C
25541715 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25543073 original size:26 final size:26
Alignment explanation
Indices: 25543032--25543084 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25543022 CCGGTCTGAT
25543032 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25543058 CTTAGACTGAGG-ATGAACTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
25543084 C
1 C
25543085 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25543868 original size:368 final size:367
Alignment explanation
Indices: 25542494--25543869 Score: 1424
Period size: 368 Copynumber: 3.8 Consensus size: 367
25542484 CCGATCCCGT
* * * *
25542494 TGCCACAACCCTCGGTCCGGCTGGGGTTTAGACATGGAATG-AGCCCCGTATGCCTAAGCCAACC
1 TGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAACC
** * * * * * * *
25542558 CATAAAATGTGCGTGCAGGCT-CTTAGTTGATCGGAGAGGCAGAATG-CCAAGTC-GGAGATCGA
65 CACGAAATGAGCGTGC-GGGTGCTCAGTCGACCGGAGAGGCAGAATGTGCAAGCCAGG-GATCG-
* * * * * * ** * * ** *
25542620 CTTGGTCCCTCCTGCATGCTATCGATACTGTTGCCGCAACCCTCGGTCCGGTCCAATCTTAGAGT
127 CTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGATCTGGTCTGATCTTAGACT
* * * * * *
25542685 GGGAATAAACTTCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
192 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACG
* * * * * * *
25542750 AGCGTCCGGACACTCA---G-TC-----G---G-TCGGAGAGGCATAATACGTAAGTCGGGGATC
257 AGCGTGCGGGCGCTCAGCCGACCAGAGAGACCGACCGGAGAGGCATAATGCGTAAGCCGGGGATC
* * * * * *
25542802 AGCTCGATCCTCTTCTGCGTGCTATCGATCCCGCTACCGGTCCTGC
322 AGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCAGTCCTGC
*
25542848 TGCCAGAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCC
* * * * * ** * * * *
25542913 ACGAAATCAGGGTGTGGGTGCTTAGTCGGCTAGAGAGGTAAAATGTGCAAGCCGGGGATCAGCCC
66 ACGAAATGAGCGTGCGGGTGCTCAGTCGACCGGAGAGGCAGAATGTGCAAGCCAGGGATC-GCTC
* * * * * *
25542978 GGTTCCCCCTGCATGCTGTCGATCCTGTTGTCGCAACCCTTGATCCGGTCTGATCTTAGACTGGG
130 GGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGATCTGGTCTGATCTTAGACTGGG
* * *
25543043 AATGAACTCCATATGCTTAGACTGAGGATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGC
195 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGC
* * * * ** * * *
25543108 GTGCGGGCGCTCAGCCGATCGGAAAGGCCGGTCGGAGAGGCATAATGTGCAAGCTGGGGATCAGC
260 GTGCGGGCGCTCAGCCGACCAGAGAGACCGACCGGAGAGGCATAATGCGTAAGCCGGGGATCAGC
* *
25543173 CCGATCCCCCTCTACGTGCTGCCGATCCCGCTGCCAGTCCTGC
325 CCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCAGTCCTGC
* * * * * *
25543216 AGCCATAACCCTCGGTCTGGCTGGGGCTTAGATGTGAAATGTACTCCGTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCC
* * * * *
25543281 ATGAAATGAACGTGCGGGCT-CTCAGTCGACCGGAGAGGCAGAATGCGCAAG-CTGAGGATCGAT
66 ACGAAATGAGCGTGCGGG-TGCTCAGTCGACCGGAGAGGCAGAATGTGCAAGCCAG-GGATCGCT
* * * * * ** *
25543344 CTGGTCCCCCCTGCGTGTTGCCGATCCTAC-AGTCACAACCCTCAATCTGGTCAAATCTTAGATT
129 C-GGTCCCCCCTGCGTGCTGTCGATCCTGCTA-TCGCAACCCTCGATCTGGTCTGATCTTAGACT
* * ** * *
25543408 AGGAGTGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAATCAACCCATGAAACG
192 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACG
* * * *
25543473 AGCGTGCGGGCGGTCAACCGGCCAGAGAGACCGACCGGAGAGGCATAATGCGTAAGCCGAGGATC
257 AGCGTGCGGGCGCTCAGCCGACCAGAGAGACCGACCGGAGAGGCATAATGCGTAAGCCGGGGATC
** * *
25543538 AGCCCGATCCCCCTCTGTATGCTGTCAATCCCACTGCCAGTCCTGC
322 AGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCAGTCCTGC
* *
25543584 TGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAACCCAACCC
1 TGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCC
* * *
25543649 ACGAAATGAGCGTGCGGGTGCTCAGTCGATCGGAAAGGCAGAATATGCAAGCCAGGGATCGGCTC
66 ACGAAATGAGCGTGCGGGTGCTCAGTCGACCGGAGAGGCAGAATGTGCAAGCCAGGGATC-GCTC
** * *
25543714 GGTCCCCCCTATGTGCTGTTGATCCTGCTATCGCAACCCTCGATCTGGTCTGATCTTAAACTGGG
130 GGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGATCTGGTCTGATCTTAGACTGGG
* * *
25543779 AATGAACTCTGTAAGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCGCGAAACGAGC
195 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGC
25543844 GTGCGGGCGCTCAGCCGACCAGAGAG
260 GTGCGGGCGCTCAGCCGACCAGAGAG
25543870 GTAGGATGCG
Statistics
Matches: 837, Mismatches: 159, Indels: 38
0.81 0.15 0.04
Matches are distributed among these distances:
353 3 0.00
354 85 0.10
355 134 0.16
356 3 0.00
358 1 0.00
359 2 0.00
364 1 0.00
367 6 0.01
368 595 0.71
369 7 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (367 bp):
TGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCC
ACGAAATGAGCGTGCGGGTGCTCAGTCGACCGGAGAGGCAGAATGTGCAAGCCAGGGATCGCTCG
GTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCG
TGCGGGCGCTCAGCCGACCAGAGAGACCGACCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCC
CGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCAGTCCTGC
Found at i:25544894 original size:159 final size:158
Alignment explanation
Indices: 25544521--25545023 Score: 465
Period size: 158 Copynumber: 3.2 Consensus size: 158
25544511 AGATCCATAT
* *
25544521 GCTTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * *
25544586 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACACGGTCCCCCCTACATGCTGTCGATCT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACATGCTGCCGATCC
* * * *
25544651 TGCACCCACAACCCTTGGTCTGGTCCCA
131 CGCACCCACAACCCTCGATCCGGTCCCA
* *** * * * *
25544679 TCTTAGAC-TGGGAATGAACTTTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * * *
25544743 GCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCAACCCGGTCCCCCTTTACGTGTTGCC-AG
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCC-CTACATGCTGCCGA-
** * ****
25544807 TCCCGCTGCCATAACCCTCGATCCGGTTGGG
128 TCCCGCACCCACAACCCTCGATCCGGTCCCA
* * * *
25544838 GCTTAGACATGGAATGAGCTCCCTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * * * * *
25544903 TCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCAATCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACATGCTGCCGATCC
* ** ** *
25544968 TGCTGCTGCAACCCTCGATCCGG-CCTGA
131 CGCACCCACAACCCTCGATCCGGTCC-CA
* *
25544996 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
25545024 TTGACTAGGG
Statistics
Matches: 273, Mismatches: 65, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
157 2 0.01
158 151 0.55
159 119 0.44
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACATGCTGCCGATCC
CGCACCCACAACCCTCGATCCGGTCCCA
Found at i:25545037 original size:25 final size:25
Alignment explanation
Indices: 25545001--25545048 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
25544991 CCTGATCTTA
25545001 GACTGGGAATGAACTCCGTATGCTT
1 GACTGGGAATGAACTCCGTATGCTT
25545026 GACTAGGG-ATGAACTCCGTATGC
1 GACT-GGGAATGAACTCCGTATGC
25545049 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (25 bp):
GACTGGGAATGAACTCCGTATGCTT
Found at i:25545721 original size:25 final size:25
Alignment explanation
Indices: 25545685--25545732 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
25545675 CCTGATCTTA
25545685 GACTGGGAATGAACTCCGTATGCTT
1 GACTGGGAATGAACTCCGTATGCTT
25545710 GACTAGGG-ATGAACTCCGTATGC
1 GACT-GGGAATGAACTCCGTATGC
25545733 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (25 bp):
GACTGGGAATGAACTCCGTATGCTT
Found at i:25545828 original size:684 final size:684
Alignment explanation
Indices: 25544521--25545974 Score: 2674
Period size: 684 Copynumber: 2.1 Consensus size: 684
25544511 AGATCCATAT
* * * * * *
25544521 GCTTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTACTCAG
1 GCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
*
25544586 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACACGGTCCCCCCTACATGCTGTCGATCT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACACGGTCCCCCCTACATGCTGTCGATCT
*
25544651 TGCACCCACAACCCTTGGTCTGGTCCCATCTTAGACTGGGAATGAACTTTGTATGCATAAGTCAA
131 TGCACCCACAACCCTTGGTCTGGTCCCATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
25544716 CCCACGAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCAA
196 CCCACGAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCAA
** * *
25544781 CCCGGTCCCCCTTTACGTGTTGCCAGTCCCGCTGCCATAACCCTCGATCCGGTTGGGGCTTAGAC
261 CCCAATCCCCCTTTACGTGTTGCCAGTCCCACTGCCATAACCCTCGATCCGGCTGGGGCTTAGAC
25544846 ATGGAATGAGCTCCCTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGG
326 ATGGAATGAGCTCCCTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGG
25544911 AGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCAATCCTGCTGCTG
391 AGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCAATCCTGCTGCTG
25544976 CAACCCTCGATCCGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCTTGACTAGGGATGAACT
456 CAACCCTCGATCCGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCTTGACTAGGGATGAACT
25545041 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCTAGAGAGGCCGGTCG
521 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCTAGAGAGGCCGGTCG
25545106 AAGAGGCATCATGCACAAGCCAGGGATCAGCCCGTTCCTCCTCAGCGTGCTGTCGATCCCGCTAT
586 AAGAGGCATCATGCACAAGCCAGGGATCAGCCCGTTCCTCCTCAGCGTGCTGTCGATCCCGCTAT
25545171 CGGTCCTGCTGCCACAACCCTCAGTTCGGCTGGG
651 CGGTCCTGCTGCCACAACCCTCAGTTCGGCTGGG
*
25545205 GCTTAGACGTGGAATGTACTCCATATGCCCAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* *
25545270 CCGACCGGAGCGGTAGAATGCGCAAGCCAAGGATCGACACGGTCCCCCCTACATGCTGTCGATCT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACACGGTCCCCCCTACATGCTGTCGATCT
* *
25545335 TGCTCCCACAACCTTTGGTCTGGTCCCATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
131 TGCACCCACAACCCTTGGTCTGGTCCCATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
* * *
25545400 CCCATGAAACGAGCGTGCGGGCACTGAGCCGGCCGAAGAGGCATAATGCATAAGCCGAGGATCAA
196 CCCACGAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCAA
* * *
25545465 CCCAATCCCCCTTTGCGTGTTGCCAGTCCCACTGCCATAACCCTCGGTTCGGCTGGGGCTTAGAC
261 CCCAATCCCCCTTTACGTGTTGCCAGTCCCACTGCCATAACCCTCGATCCGGCTGGGGCTTAGAC
25545530 ATGGAATGAGCTCCCTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGG
326 ATGGAATGAGCTCCCTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGG
25545595 AGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCAATCCTGCTGCTG
391 AGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCAATCCTGCTGCTG
25545660 CAACCCTCGATCCGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCTTGACTAGGGATGAACT
456 CAACCCTCGATCCGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCTTGACTAGGGATGAACT
25545725 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCTAGAGAGGCCGGTCG
521 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCTAGAGAGGCCGGTCG
25545790 AAGAGGCATCATGCACAAGCCAGGGATCAGCCCGTTCCTCCTCAGCGTGCTGTCGATCCCGCTAT
586 AAGAGGCATCATGCACAAGCCAGGGATCAGCCCGTTCCTCCTCAGCGTGCTGTCGATCCCGCTAT
*
25545855 CGGTCCTGCTGCCACAACCCTCAGTTTGGCTGGG
651 CGGTCCTGCTGCCACAACCCTCAGTTCGGCTGGG
*
25545889 GCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAG
1 GCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
*
25545954 CCGACCAGAGAGGCAGAATGC
66 CCGACCGGAGAGGCAGAATGC
25545975 ATAAGTCGGG
Statistics
Matches: 741, Mismatches: 29, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
684 741 1.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (684 bp):
GCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACACGGTCCCCCCTACATGCTGTCGATCT
TGCACCCACAACCCTTGGTCTGGTCCCATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
CCCACGAAACGAGCGTGCGGGCACTGAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCAA
CCCAATCCCCCTTTACGTGTTGCCAGTCCCACTGCCATAACCCTCGATCCGGCTGGGGCTTAGAC
ATGGAATGAGCTCCCTATGCCTAACCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGG
AGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCAATCCTGCTGCTG
CAACCCTCGATCCGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCTTGACTAGGGATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCTAGAGAGGCCGGTCG
AAGAGGCATCATGCACAAGCCAGGGATCAGCCCGTTCCTCCTCAGCGTGCTGTCGATCCCGCTAT
CGGTCCTGCTGCCACAACCCTCAGTTCGGCTGGG
Found at i:25546088 original size:26 final size:26
Alignment explanation
Indices: 25546048--25546099 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25546038 TCGATCCTAT
* *
25546048 TTAGATTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
25546074 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
25546100 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:25547633 original size:26 final size:26
Alignment explanation
Indices: 25547604--25547656 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25547594 CCGATCCGAT
*
25547604 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* * *
25547630 CTTAAACTGGGGATGATCTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
25547656 C
1 C
25547657 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:25548001 original size:26 final size:26
Alignment explanation
Indices: 25547972--25548024 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25547962 CCGATCCGAT
*
25547972 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
25547998 CTTAGACTGGCAGTGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
25548024 C
1 C
25548025 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:25549135 original size:159 final size:157
Alignment explanation
Indices: 25548732--25549139 Score: 458
Period size: 159 Copynumber: 2.6 Consensus size: 157
25548722 CTTAGACATA
* * * * * *
25548732 GAATGAACTCCGTATTCCTAA-GCTAACCCACGAAACAAGCGTGCGGGTGCTTAGCCGGTCGGAG
1 GAATGAACTCCGTATGCCTAAGGC-AACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGTC-GAG
** * * *
25548796 AGGCAGAATGCGCAAGCCGACGATCGACCCGATCCCCCCTGTATGCTGTCGATCCTACTGCCACA
64 AGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTATCGATCCTACTACCACA
* * *
25548861 ACCCTCGGTCTGGTCTGATCTTAGACTGG
129 ACCCTCGATCTGATCCGATCTTAGACTGG
* * * * *
25548890 GAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAACGTGCGGGCGCTGAGCTGGTCGAAAA
1 GAATGAACTCCGTATGCCTAAGGCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGTCG-AGA
* * * * * * * **
25548955 GGCATAATGCGCAAGCCGGGGATTGGCTCGGTCCCCCTCTGCGTGCTATCGATCCTGCTACTGCA
65 GGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGCATGCTATCGATCCTACTACCACA
*
25549020 ACCCTCTATCTGATCCGATCTTAGACTGG
129 ACCCTCGATCTGATCCGATCTTAGACTGG
* **
25549049 GAATGAACTCCGTATGCCTAAGGCAACCCATGAAACGAGCGTGCGGGCACTCAGCTGACCAGAGA
1 GAATGAACTCCGTATGCCTAAGGCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGTC-GAGA
* *
25549114 GGCAGGATGCGCAAGCTGGGGATCGA
65 GGCAGAATGCGCAAGCCGGGGATCGA
25549140 ACGGGTGGTA
Statistics
Matches: 205, Mismatches: 41, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.00
158 81 0.40
159 122 0.60
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GAATGAACTCCGTATGCCTAAGGCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGTCGAGAG
GCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTATCGATCCTACTACCACAAC
CCTCGATCTGATCCGATCTTAGACTGG
Found at i:25552104 original size:25 final size:26
Alignment explanation
Indices: 25552069--25552120 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
25552059 CCGATCCAAT
25552069 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25552095 CTTA-ACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25552120 C
1 C
25552121 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25552998 original size:11 final size:11
Alignment explanation
Indices: 25552982--25553008 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
25552972 CGGTTAGGCT
25552982 CTCCGACGATG
1 CTCCGACGATG
25552993 CTCCGACGATG
1 CTCCGACGATG
25553004 CTCCG
1 CTCCG
25553009 GTCCGGTCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.15, C:0.41, G:0.26, T:0.19
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:25553843 original size:368 final size:368
Alignment explanation
Indices: 25553157--25554163 Score: 1012
Period size: 368 Copynumber: 2.7 Consensus size: 368
25553147 GTCCCGCTAG
* * * *
25553157 CACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCAT
1 CACAACCCTCGGTCCGACTGGGGCTTAGACTTGGAATGTA-CTCCGTATGCCTAAGCCAACCCAC
* ** * * ** * * * * * * * *
25553221 GAAATG-GACATGTGGGCACTTAGCCGGTC-AGAGAGGCAAAATGTGCAAGCCGGGGACCGACCC
65 GAAACGAG-CATGCAGGCACTCAACCGACCGA-AAAGGTAGAATGCGCAAGCCGAGAATCAACCC
* * * *
25553284 GGTCCCCCCTGCAT-CTTGTCGATCCTGCTACCGCAACCCTCGGTCCGTTCCGATCTTAGATTGG
128 GGTCCCCCCTGCATGC-TGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGAATGG
** * * * * *
25553348 GAATGAACTCCATATGCTTAGACTGGGGATGAACTTTGTATGCCTAAGTCAACCCATGAAACAAG
192 GAATGAACTCCGCATGCTTAGACCGGGGATGAACTCTATATGCCTAAGTCAACCCACGAAACGAG
* * * * * * *
25553413 CAT-CCAGGTGTTCAGCCGGTCGGAGAGGCCGATCGGAGAGGCATAATGCATGAGCTGGGGATC-
257 CATGCGA-GCGCTCAGCCAGTCGGAGAGGCCGATCGGAAAGGCATAATGCATAAGCCGGGGATCA
* * * *
25553476 AGCCCGATCCCCCTCTACGTGCTACCAATCCCGCTGTCGATCCTGCTAC
321 AGCCAG-GCCCCCTCTACGTGCTACCAATCCCGCTGCCGATCCTACTAC
** *
25553525 CACAACCCTCGGTCCGGTTGGGGCTTAGA-TGTGGAATGTACTTCGTATGCCTAAGCCAACCCAC
1 CACAACCCTCGGTCCGACTGGGGCTTAGACT-TGGAATGTACTCCGTATGCCTAAGCCAACCCAC
* * ** * * * *
25553589 GAAACGAGCGTGCGGGTGCTCAGCTGGCC-AAAGAGGTAGAATGCGCAAGTCG-GAGATCAACCC
65 GAAACGAGCATGCAGGCACTCAACCGACCGAAA-AGGTAGAATGCGCAAGCCGAGA-ATCAACCC
* * * ** * * *
25553652 GGCCCCCCCTGCATGCTGTCGATCTTGTTGCTACAACCTTCGATCCGGTCTGATCTTAGACTGGG
128 GGTCCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGAATGGG
* ** * **
25553717 AATGAATTTTGCATGCTTAGACCGGGGATGAACTC-ATTATGCCTAAGTCGACTGACGAAACGAG
193 AATGAACTCCGCATGCTTAGACCGGGGATGAACTCTA-TATGCCTAAGTCAACCCACGAAACGAG
* *
25553781 CATGCGAGCGCTCAGTCAGTCGGAGAGGCCGA-CTGGAAAGGCATAATGCGTAAGCCGGGGATCA
257 CATGCGAGCGCTCAGCCAGTCGGAGAGGCCGATC-GGAAAGGCATAATGCATAAGCCGGGGATCA
* * * * * * * * *
25553845 AGTCAGGCCTCCTCTGCTTGCTGCCGATCCCGCTGCCGGTCCTATTGC
321 AGCCAGGCCCCCTCTACGTGCTACCAATCCCGCTGCCGATCCTACTAC
* *
25553893 CACAACCCTCGGTCCGACTGGGGTTTAGACTTGGAGTGTACTCCGTATGCCTAAGCCAACCCACG
1 CACAACCCTCGGTCCGACTGGGGCTTAGACTTGGAATGTACTCCGTATGCCTAAGCCAACCCACG
* ** **
25553958 GAACGAGCATGCAGGCACTCAACCGACCGAAAAGGTAGAATGCGCAAGCCGAGAATCGGCATGGT
66 AAACGAGCATGCAGGCACTCAACCGACCGAAAAGGTAGAATGCGCAAGCCGAGAATCAACCCGGT
* *
25554023 CCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGAATGGGAAT
131 CCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGAATGGGAAT
** * *
25554088 GAACTCCGCATGCTTAGA-CTAGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTG
196 GAACTCCGCATGCTTAGACCGGGGATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCATG
*
25554152 CGGGCGCTCAGC
261 CGAGCGCTCAGC
25554164 TGACCAGAGA
Statistics
Matches: 516, Mismatches: 109, Indels: 29
0.79 0.17 0.04
Matches are distributed among these distances:
367 50 0.10
368 451 0.87
369 15 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (368 bp):
CACAACCCTCGGTCCGACTGGGGCTTAGACTTGGAATGTACTCCGTATGCCTAAGCCAACCCACG
AAACGAGCATGCAGGCACTCAACCGACCGAAAAGGTAGAATGCGCAAGCCGAGAATCAACCCGGT
CCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGAATGGGAAT
GAACTCCGCATGCTTAGACCGGGGATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCATG
CGAGCGCTCAGCCAGTCGGAGAGGCCGATCGGAAAGGCATAATGCATAAGCCGGGGATCAAGCCA
GGCCCCCTCTACGTGCTACCAATCCCGCTGCCGATCCTACTAC
Found at i:25555321 original size:26 final size:26
Alignment explanation
Indices: 25555292--25555344 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25555282 CCGATCCGAT
*
25555292 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
**
25555318 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
25555344 C
1 C
25555345 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:25556723 original size:26 final size:26
Alignment explanation
Indices: 25556694--25556746 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25556684 CTGATCCAAT
25556694 CTTAGAC-TGGCAATGAAATCCGTATG
1 CTTAGACTTGG-AATGAAATCCGTATG
* *
25556720 CTTAGACTTGGGATGAACTCCGTATG
1 CTTAGACTTGGAATGAAATCCGTATG
25556746 C
1 C
25556747 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTTGGAATGAAATCCGTATG
Found at i:25557074 original size:26 final size:26
Alignment explanation
Indices: 25557045--25557097 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25557035 CCGGTCCGAT
25557045 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25557071 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25557097 C
1 C
25557098 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25557149 original size:351 final size:353
Alignment explanation
Indices: 25556256--25557169 Score: 1155
Period size: 355 Copynumber: 2.6 Consensus size: 353
25556246 CGGACTGAAA
* *
25556256 AGGCAGAATACGCAAGCCGGGGATC-ACCTCGATCCCCCTGCGTGCTGTCGATCCTTCTGTCGTA
1 AGGCAGAATGCGCAAGCCGGGGATCGA-CTCGATCCCCCTGCGTGCTGTCGATCCTTCTGTCGCA
* *
25556320 ACCTTCGGTCTGGTCCGATCTTAGACT-GGATTTGAACTCCGTATGCTTAGACTTGGGATGAACT
65 ACCCTCGGTCTGGTCCGATCTTAGACTGGGA-ATGAACTCCGTATGCTTAGACTTGGGATGAACT
* * * * *
25556384 CCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGAGCGCTCAACCAACCGAAAAGGCATAATG
129 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCGAAGAGGCATAATG
* ** *
25556449 CGTAAACTAGGGATCAGCCCGATCCCCCTCCGCATGCTGCCGATCCAACTGTCGGTCCTGCTGCT
194 CGTAAGCCGGGGATCAGCCCGATCCCCCTCCGCATGCTGCCGATCCAACTGTCGGTCCTGCTGCC
* * *
25556514 ACAACCCTTTGTCCAGCTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGA
259 ACAACCCTTGGTCCAGCTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAA-CCATGA
*
25556579 AACGAGCGTGCGCGCGCTCAACCGACCGGAG
323 AACGAGCGTGCGCGCGCTCAACCGACCAGAG
** * *
25556610 ACACAGAATGCACAAGCTGGGGATCGACTCGATTCCCCCTGCGTGCTGTCGATCCTTCTGTCGCA
1 AGGCAGAATGCGCAAGCCGGGGATCGACTCGA-TCCCCCTGCGTGCTGTCGATCCTTCTGTCGCA
* * * *
25556675 ACCCTCGGTCTGATCCAATCTTAGACTGGCAATGAAATCCGTATGCTTAGACTTGGGATGAACTC
65 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGGATGAACTC
* * * *
25556740 CGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGATCGAAGAGGCATAATGC
130 CGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCGAAGAGGCATAATGC
* * ** * *
25556805 ATAAGCCGGGGATCAGCCCGATCCCCCTCTGTGTGCTGTCGATCTC-ACTGTCGGTCTTGCTGCC
195 GTAAGCCGGGGATCAGCCCGATCCCCCTCCGCATGCTGCCGATC-CAACTGTCGGTCCTGCTGCC
*
25556869 ACAACCCTTGGTCCAGCTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGTCAA-C-TGAA
259 ACAACCCTTGGTCCAGCTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCATGAA
* * * * * *
25556932 ACGAGCGTAG-GGGTGCTTAGCTGGCCAGAG
324 ACGAGCGT-GCGCGCGCTCAACCGACCAGAG
* * * * * * *
25556962 AGGCAGAATGCGCAAGCCGGGGATCGGCACGGTCCCCTTACATGCTGTCGATCCTAT-TGCCGCA
1 AGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCTGCGTGCTGTCGATCCT-TCTGTCGCA
* * * *
25557026 ACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTT
65 ACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGGATGAACTC
* * *
25557091 CGTATGCCTATGTCAACCCACGAAACGAGC-AAGCGGGCGCTCAACTGACC-AGAGAGGCA-AGA
130 CGTATGCCTAAGTCAACCCACGAAACGAGCGTA-CGGGCGCTCAACCGACCGA-AGAGGCATA-A
*
25557153 TGCGCAAGCCGGGGATC
192 TGCGTAAGCCGGGGATC
25557170 GAACTGGTGG
Statistics
Matches: 481, Mismatches: 70, Indels: 21
0.84 0.12 0.04
Matches are distributed among these distances:
350 3 0.01
351 147 0.31
352 51 0.11
353 2 0.00
354 25 0.05
355 250 0.52
356 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (353 bp):
AGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCTGCGTGCTGTCGATCCTTCTGTCGCAA
CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGGATGAACTCC
GTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCGAAGAGGCATAATGCG
TAAGCCGGGGATCAGCCCGATCCCCCTCCGCATGCTGCCGATCCAACTGTCGGTCCTGCTGCCAC
AACCCTTGGTCCAGCTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCATGAAAC
GAGCGTGCGCGCGCTCAACCGACCAGAG
Found at i:25558131 original size:26 final size:26
Alignment explanation
Indices: 25558095--25558147 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25558085 TCGGTCTGAT
*
25558095 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
25558121 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
25558147 C
1 C
25558148 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:25558488 original size:26 final size:26
Alignment explanation
Indices: 25558448--25558502 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
25558438 CGATCTGATT
**
25558448 TTAGACTGGGAATGAACTTTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
25558474 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
25558500 TTA
1 TTA
25558503 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:25559474 original size:26 final size:26
Alignment explanation
Indices: 25559433--25559485 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25559423 TCGGTCCGAT
* *
25559433 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
* *
25559459 CTTAGATAGGGGATGAGCTCCGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
25559485 C
1 C
25559486 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATG
Found at i:25559837 original size:26 final size:26
Alignment explanation
Indices: 25559801--25559853 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25559791 CCGGTCTAAT
*
25559801 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25559827 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25559853 C
1 C
25559854 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25560485 original size:158 final size:158
Alignment explanation
Indices: 25559984--25560485 Score: 511
Period size: 158 Copynumber: 3.2 Consensus size: 158
25559974 GCTTCGTAAG
* * *
25559984 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCTACCCATGAAACGAGCGTACGGGCGCTTAGT
1 CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGT
* *
25560049 CAGTCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCTCCTGCGTGCTGTCGATCCT
66 CGGTCGAAGAGGCAGAATGCGCAAGCAGGGGATCGACCCGATCCCTCCTGCGTGCTGTCGATCCT
** *
25560114 ACTA-CTGGAACCCTCGATTC-AGTCTGAT
131 ACTAGC-ACAACCCTCGATTCGA-TCCGAT
* * * * *
25560142 CTTAGAC-TGGGAATGAACTCCGCATG-CATAAGTCAACCCACGAAACGAGCGTACGGGCGTTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCA-AAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* * * * * * * * * * *
25560205 GCCGGCCGAAGAGGTATAATGTGCAATCCGGGGATCGA-CCTAGTCCCTCTTTGCGTGCT-ACCA
64 GTCGGTCGAAGAGGCAGAATGCGCAAGCAGGGGATCGACCCGA-TCCCTC-CTGCGTGCTGTCGA
* * **
25560268 GTCCTACT-GCCACAACCCTCGATCTGGCTTGGA-
127 -TCCTACTAG-CACAACCCTCGAT-TCGATCCGAT
* * * *
25560301 CTTAGACATGGAATGAGCTCCCTATGCCAAAGCCAACCCATGAAACGGGTGTAC-GGCAGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTACGGGC-GCTCAG
* * *
25560365 TCGGTCGAAGAGACAGAATGCGCAAGCAGGGGATTGACCCGATCCCTCCAGCGTGCTGTCGATCC
65 TCGGTCGAAGAGGCAGAATGCGCAAGCAGGGGATCGACCCGATCCCTCCTGCGTGCTGTCGATCC
*
25560430 TACTAGCACAACCCTCGGTTCGATCCGAT
130 TACTAGCACAACCCTCGATTCGATCCGAT
25560459 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
25560486 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 55, Indels: 34
0.75 0.15 0.09
Matches are distributed among these distances:
157 11 0.04
158 142 0.52
159 108 0.40
160 11 0.04
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGT
CGGTCGAAGAGGCAGAATGCGCAAGCAGGGGATCGACCCGATCCCTCCTGCGTGCTGTCGATCCT
ACTAGCACAACCCTCGATTCGATCCGAT
Found at i:25560510 original size:26 final size:26
Alignment explanation
Indices: 25560459--25560511 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25560449 TCGATCCGAT
*
25560459 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25560485 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25560511 C
1 C
25560512 CTAAGTTTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25560678 original size:26 final size:26
Alignment explanation
Indices: 25560642--25560693 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
25560632 CCGGTCCGAT
*
25560642 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25560668 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25560694 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25562250 original size:355 final size:358
Alignment explanation
Indices: 25561685--25562672 Score: 940
Period size: 355 Copynumber: 2.7 Consensus size: 358
25561675 GGTCCCGTTG
* *
25561685 CCACAGCCCTCGATCCGGCTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCA
1 CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCA
* * * ** * *
25561749 CGAAACGGGCGTGCAGGTGCTCAGC-CTACTGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTC
65 CGAAACGAGCGTGCAGGCGCTCAGCGAT-C-GGAGAGGCAGAATGCACAAGCCAGGGATCGGCCC
* * * * * *
25561813 GATCCCCCCTTCGTGCTCTCAATCCTACTGCCACAACCTTC-AGTCCTGTCCGATCTTAGA-TGG
128 GAT-CCCCCTACGTGCTC-CGATCCTACTACTACAACCCTCGAGTCC-GTCTGATCTTAGACTGG
* * * *
25561876 TGAATGAACTGCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAATCCACAAAATGA
190 -GAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA
* * *
25561941 GCGTGCGG-G-CA-C-TC-A-GTCAGCCGAAGAGGCATAATACACAAATCGGGGATCAACCCGAT
254 GCGTGCGGTGCCACCACCGAGGTCAGCCGAAGAGGCATAATACACAAACCAGGGATCAACCCGAT
* *
25562000 CCCCCTCTACGTGCTACCGATCCTGCTGTCGGTCCTGCTA
319 CCCCCTCTACGTGCTACCGATCCCGCTGCCGGTCCTGCTA
* * * *
25562040 CCACAACCCTTGATCCGACTGGAGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCAC
* *
25562105 GAAATGAGCGTGC-GGACGCTCAGTCGATCGGAGAGGTAGAATGCACAAGCCAGGGATCGGCCC-
66 GAAACGAGCGTGCAGG-CGCTCAG-CGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCG
* *
25562168 AGTCCCACCTACGTGCTACCGATCCTGCTACTGCAACCCTCGA-TCCGGTCTGATCTTAGACTGG
129 A-TCCC-CCTACGTGCT-CCGATCCTACTACTACAACCCTCGAGTCC-GTCTGATCTTAGACTGG
* * * *
25562232 GAATGAACTTCGTATGCTTAGACTGGGGCTGAACTCCGTCTGCCTAAGTCAACCCATGAAACGAG
190 GAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
* * * * * * * *
25562297 CATACGGGTGCTCAGCCGACCGGAGAGGTTAGCTGGAGAGGCATAATGCGCAAGCCAGGGATCAA
255 CGTGC-GGTGC-CA-CC-ACC---GAGGTCAGCCGAAGAGGCATAATACACAAACCAGGGATCAA
* ** * *
25562362 CCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCGGTCTTTCTA
313 CCCGATCCCCCTCTACGTGCTACCGATCCCGCTGCCGGTCCTGCTA
* * * *
25562408 CCACAACCCTCGGTGCGGCTGGGGTTTAGACATGGAATGTACTCCGTATGCCTAAGCTAACCCAC
1 CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCAC
* * * * *
25562473 GAAACGAG-TTGCGGGGCGCTCAGCGGTC-GACGAAGGCAG-ATGCACAA-CGA-GGATCGACCC
66 GAAACGAGCGTGC-AGGCGCTCAGCGATCGGA-G-AGGCAGAATGCACAAGCCAGGGATCGGCCC
* * *
25562533 GATCGCCTCTGCGTGCTGTCGAGTCGCCTACTA-TCACAACCCTGCGAGTCCGTCTGATGCTTGA
128 GATC-CCCCTACGTGCT-CCGA-T--CCTACTACT-ACAACCCT-CGAGTCCGTCTGAT-CTT--
* * *
25562597 AGACTGGGAATG-ACCTCAGTATGCTTAGACT-GGGATGAA-TACGTATGCCCAAGTCAACCCAC
183 AGACTGGGAATGAACTTC-GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
25562659 GAAATGAGCGTGCG
247 GAAATGAGCGTGCG
25562673 ACGGCAGTCG
Statistics
Matches: 516, Mismatches: 79, Indels: 62
0.79 0.12 0.09
Matches are distributed among these distances:
354 6 0.01
355 204 0.40
356 10 0.02
357 2 0.00
359 2 0.00
361 1 0.00
363 1 0.00
365 22 0.04
366 8 0.02
367 18 0.03
368 158 0.31
369 13 0.03
370 35 0.07
371 11 0.02
372 25 0.05
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (358 bp):
CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTGCAGGCGCTCAGCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGAT
CCCCCTACGTGCTCCGATCCTACTACTACAACCCTCGAGTCCGTCTGATCTTAGACTGGGAATGA
ACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCG
GTGCCACCACCGAGGTCAGCCGAAGAGGCATAATACACAAACCAGGGATCAACCCGATCCCCCTC
TACGTGCTACCGATCCCGCTGCCGGTCCTGCTA
Found at i:25563725 original size:159 final size:160
Alignment explanation
Indices: 25563354--25563955 Score: 500
Period size: 159 Copynumber: 3.7 Consensus size: 160
25563344 AGCTCAGTAT
* * ** * *
25563354 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGAGCGTTAAG
* * * * * * ** *
25563419 CCGG-CTGGAGAGGCAGAATGCGTAAGCTGAGGATCGACTCGGTCCCCCTCTACGTGCTGTCGAT
66 CCGGTCAGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGTGTGCTATCGAT
** ** *
25563483 CCTG-TTGCAGCAACCCTCAATCCGGCCCGA
131 CCTGCTACCA-CAACCCTCAATCCGGCTGGG
* * ** * *
25563513 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTTAACCCACAAAACGAGCATGCGAGCGTTAA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGAGCGTTAA
* * * * * *
25563577 GCTGGTC-GAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGTGTGCTATCGG
65 GCCGGTCAGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGTGTGCTATCGA
* *
25563641 TCCCGCTACCACAACCCTCATTCCGGCTGGG
130 TCCTGCTACCACAACCCTCAATCCGGCTGGG
* * * * * *
25563672 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCATG-TAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGA-GCGTTAA
* * * * *
25563736 GCCGGTC-GGAGAGGTAGAATGCGTAAGTCGGGGATCGACCTGGTCCCCCCTGCATGCTGTCGAT
65 GCCGGTCAGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT-CCCCCT-C-TG-TGT-G--
** ** * * *
25563800 CCTACTGCTGATCCTGCTGTCGTAACCTTCAGTCCGACTGGG
123 -CTA-T-C-GATCCTGCTACCACAACCCTCAATCCGGCTGGG
* * *
25563842 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGAGCG-TTAA
* *
25563907 -CCGGTCAGAA-AGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCT
65 GCCGGTCAGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCT
25563956 ACGTGCTGTC
Statistics
Matches: 344, Mismatches: 80, Indels: 28
0.76 0.18 0.06
Matches are distributed among these distances:
158 2 0.01
159 200 0.58
160 11 0.03
161 1 0.00
162 2 0.01
163 3 0.01
164 1 0.00
167 3 0.01
168 1 0.00
169 7 0.02
170 109 0.32
171 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCGAGCGTTAAG
CCGGTCAGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGTGTGCTATCGAT
CCTGCTACCACAACCCTCAATCCGGCTGGG
Found at i:25563953 original size:170 final size:169
Alignment explanation
Indices: 25563653--25563974 Score: 432
Period size: 170 Copynumber: 1.9 Consensus size: 169
25563643 CCGCTACCAC
* * * *
25563653 AACCCTCATTCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAA
1 AACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAA
* * * * * * * *
25563718 TGGGCATGTAGGCGCTCAGCCGGTCGGAGAGGTAGAATGCGTAAGTCGGGGATCGACCTGGTCCC
66 TGAGCATGGAGGCGCTCAACCGGTCAGAAAGGCAGAATGCGCAAGTCGGGGATCGACCCGGT-CC
*
25563783 CCCTGCATGCTGTCGATCCTACTGCTGATCCTGCTGTCGT
130 CCCTACATGCTGTCGATCCTACTGCTGATCCTGCTGTCGT
* *
25563823 AACCTTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAA
1 AACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAA
* *
25563888 TGAGCGTGCGA-GCGCTCAACCGGTCAGAAAGGCAGAATGCGCAAG-CTGGGGATCGGCCCGGTC
66 TGAGCATG-GAGGCGCTCAACCGGTCAGAAAGGCAGAATGCGCAAGTC-GGGGATCGACCCGGTC
* *
25563951 CCCCTACGTGCTGTCTATCCTACT
129 CCCCTACATGCTGTCGATCCTACT
25563975 ATTGTAACCC
Statistics
Matches: 131, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
169 23 0.18
170 107 0.82
171 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (169 bp):
AACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAA
TGAGCATGGAGGCGCTCAACCGGTCAGAAAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCC
CCTACATGCTGTCGATCCTACTGCTGATCCTGCTGTCGT
Found at i:25564384 original size:26 final size:26
Alignment explanation
Indices: 25564355--25564407 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25564345 CCGGTCTGAT
*
25564355 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* *
25564381 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
25564407 C
1 C
25564408 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:25564752 original size:26 final size:26
Alignment explanation
Indices: 25564723--25564775 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25564713 CCGGTCTGAT
*
25564723 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACGGGGAATGAACTCCGCATG
* *
25564749 CTTAGACGGGGGATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGCATG
25564775 C
1 C
25564776 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGCATG
Found at i:25565083 original size:367 final size:366
Alignment explanation
Indices: 25563744--25565926 Score: 2124
Period size: 367 Copynumber: 6.0 Consensus size: 366
25563734 CAGCCGGTCG
* * * * * **
25563744 GAGAGGTAGAATGCGTAAGTCGGGGATC-GACCTGGTCCCCC-CTGCATGCTG-TCGATCCTACT
1 GAGAGGCATAATGCGTAAGCCGGGGATCAG-CCCGGTCCCCCTCTGCGTGCTGCT-GATCCCGCT
* * ** * * * *
25563806 G-CTGATCCTGCTGTCGTAACCTTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGC
64 GTC-GGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGC
* * * * *
25563870 CTAAGCCAACCCATGAAATGAGCGTGCGAGCGCTCAACCGGTCAGAAAGGCAGAATGCGCAAGCT
128 CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCAGAGAGGCAGAATGCGCAAGCT
* * * * ** * *
25563935 GGGGATCGGCCCGGTCCCCCTACGTGCTGTCTATCCTACTATTGTAACCCTC-AGTCCGGTCCGA
193 GGGGATCGACCCGATCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGA-TCCGGTCTGA
* * * * *
25563999 TCTTTGATTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCCATATGCATAAGTCAACC
257 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
**
25564064 CACGAAACGAGCGTGCGGGCGCTCA---G-CC---GA---TTG--
322 CACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCCGGCC
* ** * * *
25564097 GAGAGGCATAATGCGCAAGCCATGGATCAGCCCGGTCCCCTTTTGCATGCTG-TCGATCCCGCTG
1 GAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCT-GATCCCGCTG
* * * * * ** * * *
25564161 TCAGTCCTGCTACCACAACCCTTAGTCTGGCTGGGGCTTACTCGTGGAATCTACTCTGCATGCCT
65 TCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCT
* * * * *
25564226 AAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGA-CGGTCGGAGAGGCAGAATGCGCAAGCCG
130 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA-ACCGATCAGAGAGGCAGAATGCGCAAGCTG
* * * ** * *
25564290 AGGATCGACCCAATCCCCCATGCGTACTGTCGATCCTGTTGCCGCAACCCTCGGTCCGGTCTGAT
194 GGGATCGACCCGATCCCCC-TGCGTGCTGTCGATCCTACTACCGCAACCCTCGATCCGGTCTGAT
* *
25564355 CTTAGACTGGGAATCAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
258 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* ** * *
25564420 ACGAAACGAGCGTGCGGGCGCTCAGTCGACTAGAGAGGCTGGTC
323 ACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCCGGCC
* * * * * * * *
25564464 GAAGAGGCATAATTCGCAAGCCGTGGATCAGCTCGGTCCTCCTTTACGTGCTG-TCGATCCCACT
1 G-AGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCT-GATCCCGCT
* * *
25564528 GTCGGTCCTGCTGCCACAACCCTTAGTCC-AGCTGGGGCTTACACGTGGAATGCACTCCGTATGC
64 GTCGGTCCTGCTGCCACAACCCTCAGTCCGA-CTGGGGCTTAGACGTGGAATGTACTCCGTATGC
* * * *
25564592 CAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGCCAGAATGCGTAAG-T
128 CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCAGAGAGGCAGAATGCGCAAGCT
* * *
25564656 CGGGGATCGGCCCGATCCCTCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTTGATCCGGTCTG
193 -GGGGATCGACCCGATCCC-CCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATCCGGTCTG
* *
25564721 ATCTTAGACTGGGAATGAACTCCGCATGCTTAGACGGGGGATGAACTCCGTATGCCTAAGTCAAC
256 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
25564786 ACATGAAACGAGCGTGCGGGGGCTCAGCCGGCTGGAGAGGCCAGCC
321 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCCGGCC
** * * * **
25564832 GAGAGGCATAATGCGTAAGCCGGGGATCAGCTTGTTCCCTCTCTGCATGCTGCTGATCCCGCTAC
1 GAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCTGATCCCGCTGT
* * ** *
25564897 CGGTCCTACTGCCATAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGTACTCCGTATGCCTA
66 CGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTA
* * * * * **
25564962 AGCCAACCCACAAAACGAGCGTGCGGACGCTCAACTGATCGGAGAGGTAGAATGCATAAGCTGGG
131 AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCAGAGAGGCAGAATGCGCAAGCTGGG
* * * * ** * *
25565027 GATCGACCCGGTCCCCCGTACGTGTTGTTGATCCTACTGTCGTAACCCTCGATCCGGT-TCCATC
196 GATCGACCCGATCCCCC-TGCGTGCTGTCGATCCTACTACCGCAACCCTCGATCCGGTCT-GATC
* * *
25565091 TTAGACTGGGAATTAACTCCGTATGCTTAGACTGAGGATGAACTCCGTATGACTAAGTCAACCCA
259 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
** * * * * *
25565156 TAAAACGAGCATGCGGGTGCTCAACCGACCGGAGAGGTCGGCTG
324 CGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCCGGC-C
* * * * * * * * *
25565200 GAGAGACATAATGCATAAGCCGAGGATCAGACTGTTCCCCCTCTGCGTGCTAC-CAACCTCGCTG
1 GAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCTGATCC-CGCTG
* * *
25565264 TCAGTCCTGCTGCCACAACCCTC-GTTCAGACTGGGGCTTAGACGTCGAATGTACTCCGTATGCC
65 TCGGTCCTGCTGCCACAACCCTCAG-TCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCC
* * * * * * *
25565328 TAAGCCAACCCACGAAATGGGTGTGTGGGCGCTCAGCCGGTC-GAAGAGGCAGAATGCGCAGGCT
129 TAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCAG-AGAGGCAGAATGCGCAAGCT
* * * * * * ** * ** *
25565392 GGGGATC-AGTCTGGTCTTCCTTGCGTGCTGT-GATCCTGCTGTCGCAACCCTCGAACCAATCCG
193 GGGGATCGA-CCCGATC-CCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATCCGGTCTG
* * *
25565455 ATCTTTGACTGGAAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
256 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* ** * *
25565520 CCACAAAATTAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCCGGCC
321 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCCGGCC
* * ** * * *
25565566 AGAGAGGCATAAGGTGTAAGTTGGGGATCAGCCCGGTCCCCCTCTACGTGCTACTGATCTCGCTG
1 -GAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCTGATCCCGCTG
* * *
25565631 -CTGGTCCTGCTACCACAACCCTC-GATCCGACTGGGGCTTATACGTGGATTGTACTCCGTATGC
65 TC-GGTCCTGCTGCCACAACCCTCAG-TCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGC
* * * * *
25565694 CTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCAGCCGA-CTAGAAAGGCAGAATGCGCAAGC
128 CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATC-AGAGAGGCAGAATGCGCAAGC
* * * * *
25565758 CGAGGATCGTCTCGATCCTCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATCCGGTTTG
192 TGGGGATCGACCCGATCC-CCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATCCGGTCTG
* *
25565823 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATCAACTCCGTATGCCTAAGTCAAC
256 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
25565888 CCATGAAACGAACGTGTGGGCGGTTAGCCGACCAGAGAG
321 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAG
25565927 ATAGGATGCG
Statistics
Matches: 1503, Mismatches: 284, Indels: 71
0.81 0.15 0.04
Matches are distributed among these distances:
353 31 0.02
354 136 0.09
355 117 0.08
358 1 0.00
359 1 0.00
362 2 0.00
365 2 0.00
366 5 0.00
367 603 0.40
368 601 0.40
369 4 0.00
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (366 bp):
GAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCTGATCCCGCTGT
CGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTA
AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCAGAGAGGCAGAATGCGCAAGCTGGG
GATCGACCCGATCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATCCGGTCTGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCCGGCC
Found at i:25565119 original size:26 final size:26
Alignment explanation
Indices: 25565090--25565141 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25565080 CCGGTTCCAT
*
25565090 CTTAGACTG-GGAATTAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
25565116 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
25565142 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:25565229 original size:735 final size:731
Alignment explanation
Indices: 25563790--25565926 Score: 2327
Period size: 735 Copynumber: 2.9 Consensus size: 731
25563780 CCCCCCTGCA
* * * ** *
25563790 TGCTGTCGATCCTACTG-CTGATCCTGCTGTCGTAA-CCTTCAGTCC-GACTGGGGCTTAGACAT
1 TGCTGTCGATCCCACTGTC-GGTCCTGCTGCCACAACCCTT-AGTCCAGACTGGGGCTTAGACGT
* * * *
25563852 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGAGCGCTCAACCGGTCAGAA
64 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGGTCAGAG
* * * * *
25563917 AGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCC-CCTACGTGCTGTCTATCCTACTATTGTA
129 AGGCAGAATGCG-AAGCTGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTGCTATCGCA
* * *
25563981 ACCC-TCAGTCCGGTCCGATCTTTGATTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACT
193 ACCCTTGA-TCCGGTCCGATCTTTGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
* * **
25564045 CCATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-C--C---GA---TTG--GA
257 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCGGAGAGGCCAGCCGA
* ** * *
25564099 GAGGCATAATGCGCAAGCCATGGATCAGCCCGGTCCCCTTTTGCATGCTG-TCGATCCCGCTGTC
322 GAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCCC-TCTGCATGCTGCT-GATCCCGCTGCC
* * * * * * *
25564163 AGTCCTGCTACCACAACCCTTAGTCTGGCTGGGGCTTACTCGTGGAATCTACTCTGCATGCCTAA
385 GGTCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTACACGTGGAATGTACTCCGTATGCCTAA
* *
25564228 GCCAACCCATGAAACGAGCGTGCGGGTGCTCAGACGGTCGGAGAGGCAGAATGCGCAAGCCGAGG
450 GCCAACCCATGAAACGAGCGTGCGGGCGCTCA-ACGATCGGAGAGGCAGAATGCGCAAGCCGAGG
* * ** *
25564293 ATCGACCCAATCCCCCATGCGTACTGTCGATCCTGTTGCCGCAACCCTCGGTCCGG-TCTGATCT
514 ATCGACCCGATCCCCC-TGCGTGCTGTCGATCCTACTGCCGCAACCCTCGATCCGGTTC-GATCT
* *
25564357 TAGACTGGGAATCAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
577 TAGACTGGGAATCAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAT
* ** * * * *
25564422 GAAACGAGCGTGCGGGCGCTCAGTCGACTAGAGAGGCTGGTCGAAGAGGCATAATTCGCAAGCCG
642 GAAACGAGCATGCGGGCGCTCAACCGACCAGAGAGGCTGGTCGAAGAGACATAATGCACAAGCCG
* * *
25564487 TGGATCAG-CTCGGTCCTCCTTTACG
707 AGGATCAGACT-GGTCCCCCTCTACG
*
25564512 TGCTGTCGATCCCACTGTCGGTCCTGCTGCCACAACCCTTAGTCCAG-CTGGGGCTTACACGTGG
1 TGCTGTCGATCCCACTGTCGGTCCTGCTGCCACAACCCTTAGTCCAGACTGGGGCTTAGACGTGG
* * * **
25564576 AATGCACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAG
66 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGGTCAGAGAG
* * *
25564641 CCAGAATGCGTAAG-TCGGGGATCGGCCCGATCCCTCCTGCGTGCTGTCGATCCTGCTACCGCAA
131 GCAGAATGCG-AAGCT-GGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTGCTATCGCAA
* * * *
25564705 CCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACGGGGGATGAACTCC
194 CCCTTGATCCGGTCCGATCTTTGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCC
* * *
25564770 GTATGCCTAAGTCAACACATGAAACGAGCGTGCGGGGGCTCAGCCGGCTGGAGAGGCCAGCCGAG
259 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC-GGAGAGGCCAGCCGAG
** * *
25564835 AGGCATAATGCGTAAGCCGGGGATCAGCTTGTTCCCTCTCTGCATGCTGCTGATCCCGCTACCGG
323 AGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCC-CTCTGCATGCTGCTGATCCCGCTGCCGG
* * * * * *
25564900 TCCTACTGCCATAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGC
387 TCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTACACGTGGAATGTACTCCGTATGCCTAAGC
** * * ** * *
25564965 CAACCCACAAAACGAGCGTGCGGACGCTCAACTGATCGGAGAGGTAGAATGCATAAGCTGGGGAT
452 CAACCCATGAAACGAGCGTGCGGGCGCTCAAC-GATCGGAGAGGCAGAATGCGCAAGCCGAGGAT
* * * * * * *
25565030 CGACCCGGTCCCCCGTACGTGTTGTTGATCCTACTGTCGTAACCCTCGATCCGGTTCCATCTTAG
516 CGACCCGATCCCCC-TGCGTGCTGTCGATCCTACTGCCGCAACCCTCGATCCGGTTCGATCTTAG
* * * *
25565095 ACTGGGAATTAACTCCGTATGCTTAGACTGAGGATGAACTCCGTATGACTAAGTCAACCCATAAA
580 ACTGGGAATCAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
* * * *
25565160 ACGAGCATGCGGGTGCTCAACCGACCGGAGAGG-TCGG-CTGGAGAGACATAATGCATAAGCCGA
645 ACGAGCATGCGGGCGCTCAACCGACCAGAGAGGCT-GGTC-GAAGAGACATAATGCACAAGCCGA
* *
25565223 GGATCAGACTGTTCCCCCTCTGCG
708 GGATCAGACTGGTCCCCCTCTACG
* * * * * * * *
25565247 TGCT-ACCAACCTCGCTGTCAGTCCTGCTGCCACAACCC-TCGTTCAGACTGGGGCTTAGACGTC
1 TGCTGTCGATCC-CACTGTCGGTCCTGCTGCCACAACCCTTAGTCCAGACTGGGGCTTAGACGTG
* * * * *
25565310 GAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGGGTGTGTGGGCGCTCAGCCGGTC-GAAG
65 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGGTCAG-AG
* * * * * *
25565374 AGGCAGAATGCGCAGGCTGGGGATCAGTCTGGT-CTTCCTTGCGTGCTGT-GATCCTGCTGTCGC
129 AGGCAGAATGCG-AAGCTGGGGATCGGCCCGGTCCCTCC-TGCGTGCTGTCGATCCTGCTATCGC
* * ** * *
25565437 AACCCTCGAACCAATCCGATCTTTGACTGGAAATGAACTCTGTATGCTTAGACTGGGGATGAACT
192 AACCCTTGATCCGGTCCGATCTTTGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
* ** * *
25565502 CCGTATGCCTAAGTCAACCCACAAAATTAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCCGGCCA
257 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG-CGGAGAGGCCAGCC-
* * ** * * * *
25565567 GAGAGGCATAAGGTGTAAGTTGGGGATCAGCCCGGTCCCCCTCTACGTGCTACTGATCTCGCTGC
320 GAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGT-CCCCTCTGCATGCTGCTGATCCCGCTGC
* * * *
25565632 TGGTCCTGCTACCACAACCCTC-GATCCGACTGGGGCTTATACGTGGATTGTACTCCGTATGCCT
384 CGGTCCTGCTACCACAACCCTCAG-TCCGGCTGGGGCTTACACGTGGAATGTACTCCGTATGCCT
* * * * *
25565696 AAGCCAACCCATGAAATGAACGTGCGGGCGCTCAGCCGA-CTAGAAAGGCAGAATGCGCAAGCCG
448 AAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA-ACGATC-GGAGAGGCAGAATGCGCAAGCCG
* * * *
25565760 AGGATCGTCTCGATCCTCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATCCGGTTTGAT
511 AGGATCGACCCGATCC-CCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGATCCGGTTCGAT
* * *
25565825 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATCAACTCCGTATGCCTAAGTCAACCC
575 CTTAGACTGGGAATCAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
25565890 ATGAAACGAACGTGTGGGCGGTTAGCCGACCAGAGAG
640 ATGAAACGAGCATGCGGGCGCTCAACCGACCAGAGAG
25565927 ATAGGATGCG
Statistics
Matches: 1167, Mismatches: 211, Indels: 61
0.81 0.15 0.04
Matches are distributed among these distances:
721 1 0.00
722 133 0.11
723 122 0.10
724 3 0.00
726 1 0.00
730 2 0.00
733 1 0.00
734 142 0.12
735 748 0.64
736 14 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (731 bp):
TGCTGTCGATCCCACTGTCGGTCCTGCTGCCACAACCCTTAGTCCAGACTGGGGCTTAGACGTGG
AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGGTCAGAGAG
GCAGAATGCGAAGCTGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTGCTATCGCAACC
CTTGATCCGGTCCGATCTTTGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCGGAGAGGCCAGCCGAGAGG
CATAATGCGTAAGCCGGGGATCAGCCCGGTCCCCTCTGCATGCTGCTGATCCCGCTGCCGGTCCT
GCTACCACAACCCTCAGTCCGGCTGGGGCTTACACGTGGAATGTACTCCGTATGCCTAAGCCAAC
CCATGAAACGAGCGTGCGGGCGCTCAACGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACC
CGATCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGATCCGGTTCGATCTTAGACTGGG
AATCAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
ATGCGGGCGCTCAACCGACCAGAGAGGCTGGTCGAAGAGACATAATGCACAAGCCGAGGATCAGA
CTGGTCCCCCTCTACG
Found at i:25565861 original size:26 final size:26
Alignment explanation
Indices: 25565825--25565877 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25565815 CCGGTTTGAT
*
25565825 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
* *
25565851 CTTAGACTGGGGATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
25565877 C
1 C
25565878 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:25567074 original size:27 final size:26
Alignment explanation
Indices: 25567048--25567114 Score: 109
Period size: 26 Copynumber: 2.6 Consensus size: 26
25567038 TAGACAGGGA
25567048 ATGAACTCTGTATGCTTAGATTGGGG
1 ATGAACTCTGTATGCTTAGATTGGGG
25567074 ATGAACT-TCGTATGCTTAGATTGGGG
1 ATGAACTCT-GTATGCTTAGATTGGGG
*
25567100 ATGAACTCCGTATGC
1 ATGAACTCTGTATGC
25567115 CTAAGTCAAC
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
25 1 0.03
26 37 0.97
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (26 bp):
ATGAACTCTGTATGCTTAGATTGGGG
Found at i:25567859 original size:169 final size:170
Alignment explanation
Indices: 25567477--25567923 Score: 421
Period size: 169 Copynumber: 2.6 Consensus size: 170
25567467 ATGAACTCTG
* * * * * * * * * * *
25567477 TATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGGTCAGCCGGTCGGAGAGGCATAATACGC
1 TATGCCAAAGCCAACCCACGAAACGAGCATACGAGCGCTCAGTCGATCGGAGAGGCAAAATGCAC
* * * ** * * * * ** * *
25567542 AAGCCGGGGATTAGCCCGGTACCCCTTTGCGTGCTGTTGATCCCGTTGTTGGTCCTGCTGCCACA
66 AAGCCAGGGATCAGCCCGAT-CCCCCCTACATGCTGTCGATCCCGCTGCCGATCTTGCTGCCACA
* * * * * *
25567607 ACCCTCGGTCTGGCTTGGGCTTAAACGTGGAGTGTACTCCA
130 ACCCTCAGTCCGACTGGGGCTTAAACATGGAATGTACTCCA
* * * * *
25567648 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCAC
1 TATGCCAAAGCCAACCCACGAAACGAGCATACGAGCGCTCAGTCGATCGGAGAGGCAAAATGCAC
* * * *
25567713 AAGCCAGGGATCGGCCCGGTCCTCCCTGCATGCTGTCGATCCCGCTGCCGATCTTGCTGCCACAA
66 AAGCCAGGGATCAGCCCGATCCCCCCTACATGCTGTCGATCCCGCTGCCGATCTTGCTGCCACAA
* *
25567778 -CCTCAGTCCGACTGGGGCTTAGACATGGAATG-AGCTCCC
131 CCCTCAGTCCGACTGGGGCTTAAACATGGAATGTA-CTCCA
* * * * *
25567817 TATGCCAAAGCCAACCCACGAAATGGGCATACGAGTGCTCAGTCGGTCGGAGAGGCAAAATGCGC
1 TATGCCAAAGCCAACCCACGAAACGAGCATACGAGCGCTCAGTCGATCGGAGAGGCAAAATGCAC
* * *
25567882 AAGCCGGGGATCAGCTCGATCCCCCCTACGTGCTGTCGATCC
66 AAGCCAGGGATCAGCCCGATCCCCCCTACATGCTGTCGATCC
25567924 TACTATCGTA
Statistics
Matches: 228, Mismatches: 47, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
168 1 0.00
169 119 0.52
170 35 0.15
171 73 0.32
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (170 bp):
TATGCCAAAGCCAACCCACGAAACGAGCATACGAGCGCTCAGTCGATCGGAGAGGCAAAATGCAC
AAGCCAGGGATCAGCCCGATCCCCCCTACATGCTGTCGATCCCGCTGCCGATCTTGCTGCCACAA
CCCTCAGTCCGACTGGGGCTTAAACATGGAATGTACTCCA
Found at i:25569175 original size:26 final size:26
Alignment explanation
Indices: 25569135--25569186 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25569125 CTGTCCAATT
*
25569135 TTAGACTAGGAATGAACTTTGTATGC
1 TTAGACTAGGAATGAACTTCGTATGC
* *
25569161 TTAGACTGGGGATGAACTTCGTATGC
1 TTAGACTAGGAATGAACTTCGTATGC
25569187 CTAATCAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTTCGTATGC
Found at i:25569530 original size:26 final size:26
Alignment explanation
Indices: 25569501--25569553 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25569491 CTGATCCAAT
* *
25569501 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
* *
25569527 CTTAGAGTGGGGATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
25569553 C
1 C
25569554 CTAAGTCAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:25569758 original size:355 final size:353
Alignment explanation
Indices: 25568941--25569960 Score: 1050
Period size: 355 Copynumber: 2.8 Consensus size: 353
25568931 TGCGAGCTGT
* *
25568941 CGGTCCTGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGG-A-GTAAGCTCCCTATGCC
1 CGGTCCTGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGT-A-CTCCGTATGCC
* * * * * * *
25569004 TAAGACAAACCATGAAACG-G-ACGTGCGAGTGCTCAGCCGATCGGAGAGGCAGAATGTGCAAGC
64 TAAGCCAACCCATGAAACGAGCATGTG-G-GCGCTCAGCCGATCGAAGAGGAAGAATGCGCAAGC
* * * * * *
25569067 TAGGGATCGACCCGGTCCCCCCTGCGTGCTGCTGATCCTACTGTCGCAACCCTCGGTCCTG-TCC
127 CAGGGATCGA-CCGATCCCCCTTGCGTGCT-CCGATCCTACTATCGCAACCCTCGAT-CTGATCC
* * * *
25569131 AATTTTAGACTAGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAA-TCAA
189 AATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * * *
25569195 CTCACGAAACGAGCGTACGAGCGCTCAGCCGGTAGGGGAGGCCAGTCGAAGAGGCATAATGCACA
254 CCCACGAAACGAGCGTACGGGCGCTCA----GT--------CGA-TCGGAGAGGCATAATGCACA
* * * * * * *
25569260 AGTTGGGGATCAGCTCGGCCCCTCTCTGGATGTTGTCAATCCCGCTGC
306 AGCTGGGGATCAGCCCGACCCCACTATGGATGCTGTCAATCCCGCTAC
* * *
25569308 CGGTCCTGCTACCACAACCCTCGATTTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTA
1 CGGTCCTGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTA
* ** * * *
25569373 AGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGACCGAAAAGGAAGAATGCGGAAGCCAGG
66 AGCCAACCCATGAAACGAGCATGTGGGCGCTCAGCCGATCGAAGAGGAAGAATGCGCAAGCCAGG
* *
25569438 GATCGACTCGATCCCCCTTACGTGCTACCGATCCTACTACCGCAACCCTCGATCTGATCCAATCT
131 GATCGAC-CGATCCCCCTTGCGTGCT-CCGATCCTACTATCGCAACCCTCGATCTGATCCAATCT
* * *
25569503 TAGACTGGGAATGAACTCTGTATGCTTAGAGTGGGGATGAACCCCGTATGCCTAAGTCAGCCCAC
194 TAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* * **
25569568 GGAACGAGCGTATGGGCGCTCAGTCGATCGGAGAGGCATAATGTGCAAGCTGGGGATCAGCCCGA
259 GAAACGAGCGTACGGGCGCTCAGTCGATCGGAGAGGCATAATGCACAAGCTGGGGATCAGCCCGA
* * *
25569633 TCCCACTATGTG-TGCTGTCGATCCTGCTAC
324 CCCCACTATG-GATGCTGTCAATCCCGCTAC
* * * *
25569663 CGGTCCTGCTGCCACAACCTTCGGTCTGACCGGGGCTTAGACATGGAATGTACTCCGTATGCCTA
1 CGGTCCTGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTA
** * ** *
25569728 AGCCAACCCACAAAACGAGCATGTGGGCGCTCAACCGATCGAAGAGGTGGAATGCGTC-AGTC-G
66 AGCCAACCCATGAAACGAGCATGTGGGCGCTCAGCCGATCGAAGAGGAAGAATGCG-CAAGCCAG
* **
25569791 AGGATCGACCTGATCCCCCTTGCGTGCTCTCGATCCTACTATCGCAACCCTCGATCCGATCTGAT
130 -GGATCGACC-GATCCCCCTTGCGTGCTC-CGATCCTACTATCGCAACCCTCGATCTGATCCAAT
* * * * * * *
25569856 CTTAGACTGGAAATGAACTCCGTAAGCTTAGACTTGGGATAAACTCCATATGCCTAAGTCAACCT
192 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
25569921 ATGAAACGAGCGTGCGGGCGCTCAATCGACCAGAGAGGCA
257 ACGAAACGAGCGTACGGGCGCTCAGTCGATCGGAGAGGCA
25569961 GGATGCGCAA
Statistics
Matches: 548, Mismatches: 93, Indels: 36
0.81 0.14 0.05
Matches are distributed among these distances:
354 3 0.01
355 303 0.55
356 3 0.01
364 2 0.00
366 4 0.01
367 200 0.36
368 30 0.05
369 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (353 bp):
CGGTCCTGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTA
AGCCAACCCATGAAACGAGCATGTGGGCGCTCAGCCGATCGAAGAGGAAGAATGCGCAAGCCAGG
GATCGACCGATCCCCCTTGCGTGCTCCGATCCTACTATCGCAACCCTCGATCTGATCCAATCTTA
GACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTACGGGCGCTCAGTCGATCGGAGAGGCATAATGCACAAGCTGGGGATCAGCCCGACC
CCACTATGGATGCTGTCAATCCCGCTAC
Found at i:25570980 original size:26 final size:27
Alignment explanation
Indices: 25570951--25571005 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
25570941 GTCTGATCTG
25570951 AGACTGGGAATGAACTCCGTATG-CTA
1 AGACTGGGAATGAACTCCGTATGCCTA
*
25570977 AGACTGGGGATGAACTCCGTATGCCTA
1 AGACTGGGAATGAACTCCGTATGCCTA
25571004 AG
1 AG
25571006 TCAACCCATG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (27 bp):
AGACTGGGAATGAACTCCGTATGCCTA
Found at i:25571164 original size:26 final size:26
Alignment explanation
Indices: 25571135--25571186 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25571125 GGCTCAAAAT
*
25571135 CTTAGAC-TGAGAATGAGCTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
*
25571161 CTTATACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25571187 TATAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25571519 original size:26 final size:26
Alignment explanation
Indices: 25571478--25571530 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25571468 TCGGTCTGAT
25571478 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
25571504 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
25571530 C
1 C
25571531 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:25572431 original size:25 final size:26
Alignment explanation
Indices: 25572385--25572436 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
25572375 CCGGTCTGAT
25572385 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCTGCATG
*
25572411 CTTAGACTGGG-ATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGCATG
25572436 C
1 C
25572437 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGCATG
Found at i:25572892 original size:9 final size:10
Alignment explanation
Indices: 25572869--25572894 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
25572859 GTTCAGGACT
25572869 TTTTTGAAAC
1 TTTTTGAAAC
25572879 TTTTTGAAAC
1 TTTTTGAAAC
25572889 TTTTTG
1 TTTTTG
25572895 CGGTTCAGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.08, G:0.12, T:0.58
Consensus pattern (10 bp):
TTTTTGAAAC
Found at i:25572892 original size:38 final size:37
Alignment explanation
Indices: 25572844--25572920 Score: 136
Period size: 38 Copynumber: 2.1 Consensus size: 37
25572834 ATATTTTTTG
25572844 TTGAAACTTTTTACGGTTCAGGACTTTTTTGAAACTTT
1 TTGAAACTTTTTACGGTTCAGGAC-TTTTTGAAACTTT
*
25572882 TTGAAACTTTTTGCGGTTCAGGACTTTTTGAAACTTT
1 TTGAAACTTTTTACGGTTCAGGACTTTTTGAAACTTT
25572919 TT
1 TT
25572921 TAGAAAGATT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 15 0.39
38 23 0.61
ACGTcount: A:0.22, C:0.13, G:0.17, T:0.48
Consensus pattern (37 bp):
TTGAAACTTTTTACGGTTCAGGACTTTTTGAAACTTT
Found at i:25572921 original size:38 final size:39
Alignment explanation
Indices: 25572839--25572926 Score: 135
Period size: 38 Copynumber: 2.3 Consensus size: 39
25572829 TCTTCATATT
25572839 TTTTGTTGAAACTTTTTACGGTTCAGGACTTTTTTGAAAC
1 TTTT-TTGAAACTTTTTACGGTTCAGGACTTTTTTGAAAC
*
25572879 -TTTTTGAAACTTTTTGCGGTTCAGGAC-TTTTTGAAAC
1 TTTTTTGAAACTTTTTACGGTTCAGGACTTTTTTGAAAC
25572916 TTTTTTAGAAA
1 TTTTTT-GAAA
25572927 GATTTTTGTC
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
37 10 0.22
38 28 0.62
39 7 0.16
ACGTcount: A:0.24, C:0.11, G:0.17, T:0.48
Consensus pattern (39 bp):
TTTTTTGAAACTTTTTACGGTTCAGGACTTTTTTGAAAC
Found at i:25573865 original size:26 final size:26
Alignment explanation
Indices: 25573836--25573885 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
25573826 GGTCAGATCA
25573836 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* *
25573862 TAGACTGGGGATGAACTCTGTATG
1 TAGACTGGGAATGAACTCCGTATG
25573886 GCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:25574168 original size:355 final size:355
Alignment explanation
Indices: 25573635--25576462 Score: 2907
Period size: 355 Copynumber: 7.9 Consensus size: 355
25573625 CCCTTCTGCA
* * * * *
25573635 TGCTACCGGTCCCGCTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATG-AGCTCCCT
1 TGCTACCGGTCCTGTTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTA-CTCCGT
* * * * *
25573699 ATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGGGCTCAACCGGCCGGAGAGGCAGAATGCGCA
65 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGCAGAATGCGCA
* * * * ** * * *
25573764 AGCCGGGGATCGGCCTGGT-CTTCCCTGCGTGTTACCGATCTTGCTACCGCAACCCTC-AGTCCG
130 AGCTGGGGATCGGCCCGGTCCCT-CCTGCGTGCTGTCGATCCTACTACTGCAACCCTCGA-TCCG
* * * *
25573827 GTCAGATCATAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGGCTAAG
193 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
* * * * * * *
25573892 TCAACCCATGAAATGAGCGTGCGGGTGCTCAACCGGTCGGAGAGGCATAATGCGCAAGCAGGGGA
258 TCAACCCACGAAACGAGTGTGCGGGTGCTCAACCGGCCGGAGAGGCATAATGCCCAAGCCGGAGA
* * *
25573957 TCAGCCCGTTCCCCCTCTACGTGCTGTCGATCC
323 TCAGCCCGATCCCCTTCTGCGTGCTGTCGATCC
* ** * * *
25573990 TGCTACCGATCCTAATACCACAACCCTCGCTCCAGCTGGGGCTCAGACATGGAATGTACTCCGTA
1 TGCTACCGGTCCTGTTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCGTA
* * * * * *
25574055 TGCCTATGCCAACCCACGAAACGAGCGTGGGGGCACCCAGCCGGCTAGAGAGGCAGAATGCACAA
66 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGCAGAATGCGCAA
* * * * *
25574120 GCTGGGCACCGGCCTGGTCCCTCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATCCGATC
131 GCTGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTACTACTGCAACCCTCGATCCGGTC
25574185 TGATCTTAGACTGGGAATGAAC-CCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
196 TGATCTTAGACTGGGAATGAACTCC-GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
* *
25574249 AACCCACGAATCGAGTGTGCGGGCGCTCAACTGACCGGAGAGGTCGACCGGAGAGGCATAATGCC
260 AACCCACGAAACGAGTGTGCGGGTGCTC-A---ACC------G--G-CCGGAGAGGCATAATGCC
* * *
25574314 CAAGCCGAAGATCAGCCCGATCCCCTTTTGTGTGCTGTCGAT-C
312 CAAGCCGGAGATCAGCCCGATCCCCTTCTGCGTGCTGTCGATCC
* * * * * *
25574357 TCGCT-CTGGTCTTGCTACCACAACTCTCAGTCCAGCTGGGGCTTATG-CATGGAATGTACTCCG
1 T-GCTACCGGTCCTGTTGCCACAACCCTCGGTCCAGCTGGGGCTTA-GACATGGAATGTACTCCG
* * * * * *
25574420 TATGCCTAAGCCAACCCACGAAATGAACGTGCGAGCGTTCAGCCAG-TCGGAGAGGCAGAATACG
64 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCT-GGAGAGGCAGAATGCG
*
25574484 CAAGCTGGGGATAGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTACTACTGCAACCCTCGATCCG
128 CAAGCTGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTACTACTGCAACCCTCGATCCG
* * * * *
25574549 GTTTGATCTTAGATTAGAAATGAACTTCCGTATGCTTAGACTGGGGATGAGCTCCGTATGCCTAA
193 GTCTGATCTTAGACTGGGAATGAAC-TCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
* * * * *
25574614 GTTAACCCATGATACGAGTGTGCAGGTGCTCAACCAGCCGGAGAGGCATAATGCCCAAGCCGGAG
257 GTCAACCCACGAAACGAGTGTGCGGGTGCTCAACCGGCCGGAGAGGCATAATGCCCAAGCCGGAG
* * * *
25574679 ACCAACCCAATCCCCTTCTGCGTGCTATCGATCC
322 ATCAGCCCGATCCCCTTCTGCGTGCTGTCGATCC
* * *
25574713 TGCTACCGGTCCTGTTGCCATAACCCTTGGTCCAGCTGGGGCTTAGACATGGATTGTACTCCGTA
1 TGCTACCGGTCCTGTTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCGTA
* * * * * *
25574778 TGCCTAAGCCAACCCACGAAACGAGCGAGCAGGCGCTCAGCCGACCGGAGAGGTAGAATGGGCAA
66 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGCAGAATGCGCAA
* * * * * * * *
25574843 G-TCGGGGATCAGCCCGGTCCC-CATTGCATGCTGTCGATCCTGCTACTGCAAACTTTGATCCAG
131 GCT-GGGGATCGGCCCGGTCCCTC-CTGCGTGCTGTCGATCCTACTACTGCAACCCTCGATCCGG
*
25574906 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
194 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
* * *
25574971 CAACCCACGAATCGAGTGTGCGGGCACTCAACTGACCGGAGAGGCCGACCGGAGAGGCATAATGC
259 CAACCCACGAAACGAGTGTGCGGG---T--GCT---C--A-A--CCGGCCGGAGAGGCATAATGC
* * *
25575036 CCAAGCCGAAGATCAGCCCGATCCCCTTTTGTGTGCTGTCGAT-C
311 CCAAGCCGGAGATCAGCCCGATCCCCTTCTGCGTGCTGTCGATCC
* * * * * *
25575080 TCGCT-CTGGTCTTGCTACCACAACTCTCAGTCCAGCTGGGGCTTATG-CATGGAATGTACTCCG
1 T-GCTACCGGTCCTGTTGCCACAACCCTCGGTCCAGCTGGGGCTTA-GACATGGAATGTACTCCG
* * * * * *
25575143 TATGCCTAAGCCAACCCACGAAATGAACGTGCGAGCGTTCAGCCAG-TCGGAGAGGCAGAATACG
64 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCT-GGAGAGGCAGAATGCG
*
25575207 CAAGCTGGGGATAGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTACTACTGCAACCCTCGATCCG
128 CAAGCTGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTACTACTGCAACCCTCGATCCG
* * * * *
25575272 GTTTGATCTTAGATTAGAAATGAACTCCGTATGCTTAGACTGGGGATGAGCTCCGTATGCCTAAG
193 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
* * * * *
25575337 TTAACCCATGATACGAGTGTGCAGGTGCTCAACCAGCCGGAGAGGCATAATGCCCAAGCCGGAGA
258 TCAACCCACGAAACGAGTGTGCGGGTGCTCAACCGGCCGGAGAGGCATAATGCCCAAGCCGGAGA
* * *
25575402 CCAACCC-AGTCCCCTTCTGCGTGCTATCGATCC
323 TCAGCCCGA-TCCCCTTCTGCGTGCTGTCGATCC
* *
25575435 TGCTACCGGTCCTGTTGCCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGATTGTACTCCGTA
1 TGCTACCGGTCCTGTTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCGTA
* * * * * *
25575500 TGCCTAAGCCAACCCACGAAACGAGCGAGCAGGCGCTCAGCCGACCGGAGAGGTAGAATGGGCAA
66 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGCAGAATGCGCAA
* * * * * * * *
25575565 G-TCGGGGATCAGCCCGGTCCC-CATTGCATGCTGTCGATCCTGCTACTGCAAACTTTGATCCAG
131 GCT-GGGGATCGGCCCGGTCCCTC-CTGCGTGCTGTCGATCCTACTACTGCAACCCTCGATCCGG
*
25575628 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
194 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
** ** * * * * *
25575693 CAACCCACGAAACGAGCATGCGGGCACTCAGCCGACCAGAGAGGCATAATGCGCAAGCC-AAGGA
259 CAACCCACGAAACGAGTGTGCGGGTGCTCAACCGGCCGGAGAGGCATAATGCCCAAGCCGGA-GA
* ** * *
25575757 TCGGTTCGATCCCCCTCTGCGTGCTGCCGATCC
323 TCAGCCCGATCCCCTTCTGCGTGCTGTCGATCC
* * ** ** * *
25575790 AGCTGCCGGTCCTGTTGCTGCAACATTCGGTCC-GACTAGGGCTTAGACATGGAATGTACTCCAT
1 TGCTACCGGTCCTGTTGCCACAACCCTCGGTCCAG-CTGGGGCTTAGACATGGAATGTACTCCGT
* * **
25575854 ATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGCCGATTGGAGAGGCAGCATAATGC
65 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGCAG---AATGC
* * * ** *
25575919 ACAAGAC-GGGGATCAGCCCGGTCCCTCCTGCGTGCTATCGATCCTACTGTTGCAACCCTTGATC
127 GCAAG-CTGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTACTACTGCAACCCTCGATC
* *
25575983 CGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTACGCCTA
191 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTA
*
25576048 AGTCAACCCACGAAACGAGTGTGCGGGTGCTCAGTTGGTCGGAAAGGCCAGCCGGAGAGGCATAA
256 AGTCAACCCACGAAACGAGTGTGCGGGTG--C------TC---AA--CCGGCCGGAGAGGCATAA
* * * * *
25576113 TGCCAAAGCCGGAGATCAACCTGGT-CCCTCTCTGCGTGCTATCGATACC
308 TGCCCAAGCCGGAGATCAGCCCGATCCCCT-TCTGCGTGCTGTCGAT-CC
* ** * **
25576162 -ACTGTCGGTCCTATTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGTACTCCGTA
1 TGCTACCGGTCCTGTTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCGTA
* * * * * ** * * **
25576226 TGCCTAAGCCAACCCATGAAATGTGCGTGCTGACGCTCAATCGG-TCAGAGAGGAAGAATGCATA
66 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCT-GGAGAGGCAGAATGCGCA
** * * * * * * * *
25576290 AGCCAGGGATC-GCCTGGTCCCCCCTGCATACTGCCGATCCTGCTACCGTAACCCTCGATCCGGT
130 AGCTGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTACTACTGCAACCCTCGATCCGGT
* *
25576354 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTC
195 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
* * * *
25576419 AACTCACG-AACGAGCGTGCGGGTGCTCAACCGACCAGAGAGGCA
260 AACCCACGAAACGAGTGTGCGGGTGCTCAACCGGCCGGAGAGGCA
25576463 GGATGCACAA
Statistics
Matches: 2044, Mismatches: 348, Indels: 164
0.80 0.14 0.06
Matches are distributed among these distances:
353 13 0.01
354 64 0.03
355 743 0.36
356 180 0.09
357 1 0.00
358 144 0.07
359 5 0.00
360 3 0.00
362 2 0.00
363 1 0.00
364 5 0.00
365 2 0.00
366 19 0.01
367 522 0.26
368 190 0.09
369 3 0.00
370 4 0.00
371 139 0.07
372 4 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (355 bp):
TGCTACCGGTCCTGTTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCGTA
TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGCAGAATGCGCAA
GCTGGGGATCGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTACTACTGCAACCCTCGATCCGGTC
TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGTGTGCGGGTGCTCAACCGGCCGGAGAGGCATAATGCCCAAGCCGGAGATCA
GCCCGATCCCCTTCTGCGTGCTGTCGATCC
Found at i:25574225 original size:26 final size:26
Alignment explanation
Indices: 25574189--25574241 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25574179 CCGATCTGAT
25574189 CTTAGACTGGGAATGAAC-CCTGTATG
1 CTTAGACTGGGAATGAACTCC-GTATG
*
25574215 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25574241 C
1 C
25574242 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25574941 original size:26 final size:26
Alignment explanation
Indices: 25574912--25574964 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25574902 CCAGTCCGAT
25574912 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25574938 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25574964 C
1 C
25574965 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25575022 original size:13 final size:13
Alignment explanation
Indices: 25575004--25575028 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25574994 GCACTCAACT
25575004 GACCGGAGAGGCC
1 GACCGGAGAGGCC
25575017 GACCGGAGAGGC
1 GACCGGAGAGGC
25575029 ATAATGCCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
GACCGGAGAGGCC
Found at i:25575661 original size:722 final size:722
Alignment explanation
Indices: 25573664--25576461 Score: 3459
Period size: 723 Copynumber: 3.9 Consensus size: 722
25573654 ACAACCCTTG
* * * * **
25573664 GTCCGGCTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGT
1 GTCCAGCTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCACGAAATGAACGT
* * * * * * * * * *
25573728 GCGGGGGCTCAACCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGT-CTTCCCTGC
65 GCGAGCGCTCAGCCAGTCGGAGAGGCAGAATACGCAAGCTGGGGATAGGCCCGGTCCCT-CCTGC
* * * * * * * * *
25573792 GTGTTACCGATCTTGCTACCGCAACCCTC-AGTCCGGTCAGATCATAGACTGGGAATGAACTCCG
129 GTGCTATCGATCCTACTACTGCAACCCTCGA-TCCGGTCTGATCTTAGACTAGAAATGAACTCCG
* * * * *
25573856 TATGCTTAGACTGGGGATGAACTCTGTATGGCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCT
193 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCAGGTGCT
* * * * * * * * * *
25573921 CAACCGGTCGGAGAGGCATAATGCGCAAGCAGGGGATCAGCCC-GTTCCCCCTCTACGTGCTGTC
258 CAACCAGCCGGAGAGGCATAATGCCCAAGCCGGAGACCAACCCAG-TCCCCTTCTGCGTGCTATC
* * * * *
25573985 GATCCTGCTACCGATCCTAATACCACAACCCTCGCTCCAGCTGGGGCTCAGACATGGAATGTACT
322 GATCCTGCTACCGGTCCTATTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACT
* * ** * * * * *
25574050 CCGTATGCCTATGCCAACCCACGAAACGAGCGTGGGGGCACCCAGCCGGCTAGAGAGGCAGAATG
387 CCGTATGCCTAAGCCAACCCACGAAACGAGCGAGCAGGCGCTCAGCCGACCAGAGAGGTAGAATG
* * * * * * *
25574115 CACAAG-CTGGGCACCGGCCTGGTCCCTC-CTGCGTGCTGTCGATCCTACTACCGCAACCCTCGA
452 CACAAGTC-GGGGATCAGCCCGGTCCC-CACTGCATGCTGTCGATCCTGCTACCGCAAACCTCGA
*
25574178 TCC-GATCTGATCTTAGACTGGGAATGAAC-CCTGTATGCTTAGACTGGGGATGAACTCCGTATG
515 TCCAG-TCCGATCTTAGACTGGGAATGAACTCC-GTATGCTTAGACTGGGGATGAACTCCGTATG
* * *
25574241 CCTAAGTCAACCCACGAATCGAGTGTGCGGGCGCTCAACTGACCGGAGAGGTCGACCGGAGAGGC
578 CCTAAGTCAACCCACGAATCGAGCGTGCGGGCACTCAACTGACCGGAGAGGCCGACCGGAGAGGC
25574306 ATAATGCCCAAGCCGAAGATCAGCCCGATCCCCTTTTGTGTGCTGTCGATCTCGCTCTGGTCTTG
643 ATAATGCCCAAGCCGAAGATCAGCCCGATCCCCTTTTGTGTGCTGTCGATCTCGCTCTGGTCTTG
25574371 CTACCACAACTCTCA
708 CTACCACAACTCTCA
25574386 GTCCAGCTGGGGCTTATG-CATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAACGT
1 GTCCAGCTGGGGCTTA-GACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAACGT
*
25574450 GCGAGCGTTCAGCCAGTCGGAGAGGCAGAATACGCAAGCTGGGGATAGGCCCGGTCCCTCCTGCG
65 GCGAGCGCTCAGCCAGTCGGAGAGGCAGAATACGCAAGCTGGGGATAGGCCCGGTCCCTCCTGCG
* * *
25574515 TGCTGTCGATCCTACTACTGCAACCCTCGATCCGGTTTGATCTTAGATTAGAAATGAACTTCCGT
130 TGCTATCGATCCTACTACTGCAACCCTCGATCCGGTCTGATCTTAGACTAGAAATGAAC-TCCGT
* * *
25574580 ATGCTTAGACTGGGGATGAGCTCCGTATGCCTAAGTTAACCCATGATACGAGTGTGCAGGTGCTC
194 ATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCAGGTGCTC
*
25574645 AACCAGCCGGAGAGGCATAATGCCCAAGCCGGAGACCAACCCAATCCCCTTCTGCGTGCTATCGA
259 AACCAGCCGGAGAGGCATAATGCCCAAGCCGGAGACCAACCCAGTCCCCTTCTGCGTGCTATCGA
* * * *
25574710 TCCTGCTACCGGTCCTGTTGCCATAACCCTTGGTCCAGCTGGGGCTTAGACATGGATTGTACTCC
324 TCCTGCTACCGGTCCTATTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCC
* **
25574775 GTATGCCTAAGCCAACCCACGAAACGAGCGAGCAGGCGCTCAGCCGACCGGAGAGGTAGAATGGG
389 GTATGCCTAAGCCAACCCACGAAACGAGCGAGCAGGCGCTCAGCCGACCAGAGAGGTAGAATGCA
* * * *
25574840 CAAGTCGGGGATCAGCCCGGTCCCCATTGCATGCTGTCGATCCTGCTACTGCAAACTTTGATCCA
454 CAAGTCGGGGATCAGCCCGGTCCCCACTGCATGCTGTCGATCCTGCTACCGCAAACCTCGATCCA
25574905 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
519 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
*
25574970 TCAACCCACGAATCGAGTGTGCGGGCACTCAACTGACCGGAGAGGCCGACCGGAGAGGCATAATG
584 TCAACCCACGAATCGAGCGTGCGGGCACTCAACTGACCGGAGAGGCCGACCGGAGAGGCATAATG
25575035 CCCAAGCCGAAGATCAGCCCGATCCCCTTTTGTGTGCTGTCGATCTCGCTCTGGTCTTGCTACCA
649 CCCAAGCCGAAGATCAGCCCGATCCCCTTTTGTGTGCTGTCGATCTCGCTCTGGTCTTGCTACCA
25575100 CAACTCTCA
714 CAACTCTCA
25575109 GTCCAGCTGGGGCTTATG-CATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAACGT
1 GTCCAGCTGGGGCTTA-GACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAACGT
*
25575173 GCGAGCGTTCAGCCAGTCGGAGAGGCAGAATACGCAAGCTGGGGATAGGCCCGGTCCCTCCTGCG
65 GCGAGCGCTCAGCCAGTCGGAGAGGCAGAATACGCAAGCTGGGGATAGGCCCGGTCCCTCCTGCG
* * *
25575238 TGCTGTCGATCCTACTACTGCAACCCTCGATCCGGTTTGATCTTAGATTAGAAATGAACTCCGTA
130 TGCTATCGATCCTACTACTGCAACCCTCGATCCGGTCTGATCTTAGACTAGAAATGAACTCCGTA
* * *
25575303 TGCTTAGACTGGGGATGAGCTCCGTATGCCTAAGTTAACCCATGATACGAGTGTGCAGGTGCTCA
195 TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCAGGTGCTCA
25575368 ACCAGCCGGAGAGGCATAATGCCCAAGCCGGAGACCAACCCAGTCCCCTTCTGCGTGCTATCGAT
260 ACCAGCCGGAGAGGCATAATGCCCAAGCCGGAGACCAACCCAGTCCCCTTCTGCGTGCTATCGAT
* * *
25575433 CCTGCTACCGGTCCTGTTGCCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGATTGTACTCCG
325 CCTGCTACCGGTCCTATTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCG
* **
25575498 TATGCCTAAGCCAACCCACGAAACGAGCGAGCAGGCGCTCAGCCGACCGGAGAGGTAGAATGGGC
390 TATGCCTAAGCCAACCCACGAAACGAGCGAGCAGGCGCTCAGCCGACCAGAGAGGTAGAATGCAC
* * * *
25575563 AAGTCGGGGATCAGCCCGGTCCCCATTGCATGCTGTCGATCCTGCTACTGCAAACTTTGATCCAG
455 AAGTCGGGGATCAGCCCGGTCCCCACTGCATGCTGTCGATCCTGCTACCGCAAACCTCGATCCAG
25575628 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
520 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
* *
25575693 CAACCCACGAAACGAGCATGCGGGCACTC-A--G-CC---GA--CC-A---GAGAGGCATAATGC
585 CAACCCACGAATCGAGCGTGCGGGCACTCAACTGACCGGAGAGGCCGACCGGAGAGGCATAATGC
* * ** * * * * * * * *
25575745 GCAAGCC-AAGGATCGGTTCGATCCCCCTCTGCGTGCTGCCGATC-CAGCTGCCGGTCCTGTTGC
650 CCAAGCCGAA-GATCAGCCCGATCCCCTTTTGTGTGCTGTCGATCTC-GCT-CTGGTCTTGCTAC
** *
25575808 TGCAACAT-TCG
712 CACAAC-TCTCA
* * **
25575819 GTCC-GACTAGGGCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAGTGT
1 GTCCAG-CTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAACGT
* * * *
25575883 GCGGGCGCTCAGCC-GATTGGAGAGGCAGCATAATGCACAAGAC-GGGGATCA-GCCCGGTCCCT
65 GCGAGCGCTCAGCCAG-TCGGAGAGGCAG---AATACGCAAG-CTGGGGAT-AGGCCCGGTCCCT
** * * *
25575945 CCTGCGTGCTATCGATCCTACTGTTGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAAC
124 CCTGCGTGCTATCGATCCTACTACTGCAACCCTCGATCCGGTCTGATCTTAGACTAGAAATGAAC
* * * *
25576010 TTCGTATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGTGTGCGGG
189 TCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCAGG
* * **
25576075 TGCTCAGTTGGTCGGAAAGGCCAGCCGGAGAGGCATAATGCCAAAGCCGGAGATCAACCTGGT-C
254 TG--C------TC---AA--CCAGCCGGAGAGGCATAATGCCCAAGCCGGAGACCAACCCAGTCC
* ** **
25576139 CCTCTCTGCGTGCTATCGATACC-ACTGTCGGTCCTATTGCCACAACCCTCGGTCTGGCTGGGGC
306 CCT-TCTGCGTGCTATCGAT-CCTGCTACCGGTCCTATTGCCACAACCCTCGGTCCAGCTGGGGC
* * * * * * **
25576203 TTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAATGTGCGTGCTGACGCTCAATC
369 TTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAGCAGGCGCTCAGCC
** * * * * * * * *
25576268 GGTCAGAGAGGAAGAATGCATAAGCCAGGGATC-GCCTGGTCCCCCCTGCATACTGCCGATCCTG
434 GACCAGAGAGGTAGAATGCACAAGTCGGGGATCAGCCCGGTCCCCACTGCATGCTGTCGATCCTG
* * * * *
25576332 CTACCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGG
499 CTACCGCAAACCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
* * ** * *
25576397 ATGAACTCCATATGCCTAAGTCAACTCACGAA-CGAGCGTGCGGGTGCTCAACCGACCAGAGAGG
564 ATGAACTCCGTATGCCTAAGTCAACCCACGAATCGAGCGTGCGGGCACTCAACTGACCGGAGAGG
25576461 C
629 C
25576462 AGGATGCACA
Statistics
Matches: 1856, Mismatches: 174, Indels: 81
0.88 0.08 0.04
Matches are distributed among these distances:
708 3 0.00
709 53 0.03
710 94 0.05
711 1 0.00
712 1 0.00
713 144 0.08
714 2 0.00
715 3 0.00
718 2 0.00
719 1 0.00
721 3 0.00
722 571 0.31
723 663 0.36
724 20 0.01
725 118 0.06
726 169 0.09
727 3 0.00
728 2 0.00
731 2 0.00
733 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (722 bp):
GTCCAGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTG
CGAGCGCTCAGCCAGTCGGAGAGGCAGAATACGCAAGCTGGGGATAGGCCCGGTCCCTCCTGCGT
GCTATCGATCCTACTACTGCAACCCTCGATCCGGTCTGATCTTAGACTAGAAATGAACTCCGTAT
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCAGGTGCTCAA
CCAGCCGGAGAGGCATAATGCCCAAGCCGGAGACCAACCCAGTCCCCTTCTGCGTGCTATCGATC
CTGCTACCGGTCCTATTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCGT
ATGCCTAAGCCAACCCACGAAACGAGCGAGCAGGCGCTCAGCCGACCAGAGAGGTAGAATGCACA
AGTCGGGGATCAGCCCGGTCCCCACTGCATGCTGTCGATCCTGCTACCGCAAACCTCGATCCAGT
CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
AACCCACGAATCGAGCGTGCGGGCACTCAACTGACCGGAGAGGCCGACCGGAGAGGCATAATGCC
CAAGCCGAAGATCAGCCCGATCCCCTTTTGTGTGCTGTCGATCTCGCTCTGGTCTTGCTACCACA
ACTCTCA
Found at i:25575663 original size:26 final size:26
Alignment explanation
Indices: 25575634--25575686 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25575624 CCAGTCCGAT
25575634 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25575660 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25575686 C
1 C
25575687 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25576028 original size:26 final size:26
Alignment explanation
Indices: 25575992--25576041 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
25575982 CCGGTCTGAT
*
25575992 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25576018 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
25576042 CGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25576388 original size:26 final size:26
Alignment explanation
Indices: 25576359--25576411 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25576349 CCGGTCTGAT
*
25576359 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
25576385 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
25576411 C
1 C
25576412 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:25577891 original size:26 final size:26
Alignment explanation
Indices: 25577852--25577902 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
25577842 GGTCTGATCC
25577852 TAGACTGGGAATGAACCCCGTATGCT
1 TAGACTGGGAATGAACCCCGTATGCT
* * *
25577878 TAGATTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACCCCGTATGC
25577903 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACCCCGTATGCT
Found at i:25579059 original size:158 final size:158
Alignment explanation
Indices: 25578755--25579042 Score: 357
Period size: 158 Copynumber: 1.8 Consensus size: 158
25578745 TCAGTCTAAT
* * * *
25578755 CTTAGACTAGGAATGAACTCCGTATGCACAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCCTATGCACAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAGC
* * ** ** * *
25578820 CGGCCGAAGAGGCATAATGCCCAAGCTGGGGATTGGGTCGGTCCCCCTCTGCGTGCTGTCGGTCC
66 CGACCGAAGAGGCAGAATGCCCAAGCCAGGGATTGCCTCGGTCCCCCCCTGCGTGCTGTCGATCC
25578885 CACTGCCACAACCCTCGTCCAGCTCAGA
131 CACTGCCACAACCCTCGTCCAGCTCAGA
* *
25578913 CTTAGAC-ATGGAATGACCTCCCTATGC-CTAAGCCAACCCATGAAACAAGCGTGCAGGCGCTCA
1 CTTAGACTA-GGAATGAACTCCCTATGCAC-AAGCCAACCCACGAAACAAGCGTGCAGGCGCTCA
* * * * *
25578976 GTCGACCGGAGAGGTAGAATGCGCAAGCCAGGGATTGACCT-GGTCCCCCCCTGTGTGCTGTCGA
64 GCCGACCGAAGAGGCAGAATGCCCAAGCCAGGGATTG-CCTCGGTCCCCCCCTGCGTGCTGTCGA
25579040 TCC
128 TCC
25579043 TATTGCTGTA
Statistics
Matches: 108, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
157 2 0.02
158 105 0.97
159 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCCTATGCACAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAGC
CGACCGAAGAGGCAGAATGCCCAAGCCAGGGATTGCCTCGGTCCCCCCCTGCGTGCTGTCGATCC
CACTGCCACAACCCTCGTCCAGCTCAGA
Found at i:25579101 original size:26 final size:26
Alignment explanation
Indices: 25579072--25579124 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25579062 CCGATCCAAT
25579072 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
25579098 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
25579124 C
1 C
25579125 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:25580184 original size:159 final size:157
Alignment explanation
Indices: 25579828--25580191 Score: 392
Period size: 157 Copynumber: 2.3 Consensus size: 157
25579818 AGCTTCGTAT
* *
25579828 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGCACTCAA
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAA
* * *
25579893 TCGGCTAGAGAGGTAGAATGCGCAAGCCGAGGATCGACTCGACCCCCTTGCGTGCTGCCGATCCT
66 TCGGCGAGAGAGGCAGAATGCACAAGCCGAGGATCGACTCGACCCCCTTGCGTGCTGCCGATCCT
* * *
25579958 GCTGCCGCAGCCCTCGGTCCGATCCGA
131 GCTGCCACAACCATCGGTCCGATCCGA
* * * * * * * **
25579985 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGC-GTTGA
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAA
* * * * *
25580049 GCTGGCCGA-AGAGGCATAATGCACAAGCCGGGGATCGGCTCGATCCCCCTCTGCGTGCTGCCGG
66 TC-GG-CGAGAGAGGCAGAATGCACAAGCCGAGGATCGACTCGA-CCCCCT-TGCGTGCTGCCGA
* ** *
25580113 TGCC-GCTGCCACAACCATCGGTCCGTTTGGG
127 T-CCTGCTGCCACAACCATCGGTCCGATCCGA
* * * *
25580144 GCTTAGACTTGGATTGAGCTCCCTATGCCTAAGCCAACCCACTAAACG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
25580192 GGAGAGGCTG
Statistics
Matches: 167, Mismatches: 35, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
156 3 0.02
157 82 0.49
158 8 0.05
159 72 0.43
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAA
TCGGCGAGAGAGGCAGAATGCACAAGCCGAGGATCGACTCGACCCCCTTGCGTGCTGCCGATCCT
GCTGCCACAACCATCGGTCCGATCCGA
Found at i:25580309 original size:26 final size:26
Alignment explanation
Indices: 25580280--25580332 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25580270 CTGGTCTGAT
25580280 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
* *
25580306 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
25580332 C
1 C
25580333 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:25580684 original size:26 final size:26
Alignment explanation
Indices: 25580648--25580700 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25580638 TTGGTTTAAT
*
25580648 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
25580674 CTTAAACTGGGGATGACCTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
25580700 C
1 C
25580701 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:25581046 original size:26 final size:26
Alignment explanation
Indices: 25581016--25581066 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25581006 CCAGTCTAAT
*
25581016 CTTAGACTGGGAATGATCTCTGTATA
1 CTTAGACTGGGAATGAACTCTGTATA
*
25581042 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
25581067 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATA
Found at i:25581108 original size:368 final size:368
Alignment explanation
Indices: 25580194--25581108 Score: 1019
Period size: 368 Copynumber: 2.5 Consensus size: 368
25580184 ACTAAACGGG
* ** * * * *
25580194 AGAGGCTGAATGCATAAGCCAGG-GATCAGCCCGGTCCCCTCTACGTGCTGCCGATCCTACTACC
1 AGAGGCAGAATGCGCAAGCC-GGAGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCCTACTATC
* * *
25580258 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATAAACTCTGTATGCTTAGACTGGGGATGAA
65 GCAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAA
* * ** * *
25580323 CTCTGTATGCCTAAGTCAACCCTCAAAACGAGCGTGCAGACGCTCAACCGGCCGAAGAAGCCGAC
130 CTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGTAGGTGCTCAGCCAGCCGAAGAAGCCGAC
* * *** * *
25580388 CGGAGAGGCATAATGCGTAAGTCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCAATCCCGCT
195 CAGAAAAAAATAATGCGCAAGTCAGGGATCAGCCCAGTCCCCCTCTGCATGCTGTCAATCCCGCT
* * * *
25580453 GTCGGTCCTACTGCCACAACCCTCGGTCTGACTAGGGCTTAGACGTGAAATGTACTCCGTATGCC
260 GCCAGTCCTACTACCACAACCCTCGGTCTGACTAGGGCTTAGACATGAAATGTACTCCGTATGCC
* * *
25580518 TAAGCCAACCTACGAAATGAGCGTGCGGGCGCTCAGCCGATCGG
325 TAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGATCGA
* ** * *
25580562 AGAGGCAGAATGCGCAAGCCGGAGATCGACTTGGTCCCCTCTGCGTGCTATCGATCCTACTGTCG
1 AGAGGCAGAATGCGCAAGCCGGAGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCCTACTATCG
* * * * *
25580627 CAACCCTCGATTTGGTTTAATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGGATGACC
66 CAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAAC
* * * * * *
25580692 TCCGTATGCCTAAGTCAACCCACAAAACGAGCGTATGGGTGTTCAGCCAGCCGAAG-AGATCGGC
131 TCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGTAGGTGCTCAGCCAGCCGAAGAAG-CCGAC
* * * * * * ** *
25580756 CAGAAAAAAATAATGTGCAAG-CTGATGATCAGCCCGGTTCCTCTCTGCATGCTGTTGATCTCGC
195 CAGAAAAAAATAATGCGCAAGTCAG-GGATCAGCCCAGTCCCCCTCTGCATGCTGTCAATCCCGC
* * * * * *
25580820 TGCCAGTCCTGCTACCATAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGTACTCCGTATGC
259 TGCCAGTCCTACTACCACAACCCTCGGTCTGACTAGGGCTTAGACATGAAATGTACTCCGTATGC
* * * * *
25580885 TTAAGCCAACCCATGAAATGAGTGTGCAGGTGCTCAGTCGATCGA
324 CTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGATCGA
* * ** * * * *
25580930 AGAGGCAGAATGTGCAGGTTGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCG
1 AGAGGCAGAATGCGCAAGCCGGAGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCCTACTATCG
* * ** * *
25580995 TAACCCTTGATCCAGTCTAATCTTAGACTGGGAATGATCTCTGTATACTTAGACTGGGGATGAAC
66 CAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAAC
** *
25581060 TCTGTATGCCTAAGTCAACCCACGCAAC-AGGCGTGTTGGTGCTCAGCCA
131 TCTGTATGCCTAAGTCAACCCACAAAACGA-GCGTGTAGGTGCTCAGCCA
25581109 ACTAGAGAGG
Statistics
Matches: 447, Mismatches: 96, Indels: 8
0.81 0.17 0.01
Matches are distributed among these distances:
367 7 0.02
368 440 0.98
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (368 bp):
AGAGGCAGAATGCGCAAGCCGGAGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCCTACTATCG
CAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAAC
TCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGTAGGTGCTCAGCCAGCCGAAGAAGCCGACC
AGAAAAAAATAATGCGCAAGTCAGGGATCAGCCCAGTCCCCCTCTGCATGCTGTCAATCCCGCTG
CCAGTCCTACTACCACAACCCTCGGTCTGACTAGGGCTTAGACATGAAATGTACTCCGTATGCCT
AAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGATCGA
Found at i:25581738 original size:26 final size:26
Alignment explanation
Indices: 25581700--25581752 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25581690 GGCTCAAAAT
25581700 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25581726 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25581752 C
1 C
25581753 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25582164 original size:184 final size:185
Alignment explanation
Indices: 25581918--25582329 Score: 451
Period size: 184 Copynumber: 2.2 Consensus size: 185
25581908 CTGCATATGT
* * ** * *
25581918 CAACCCATGAAATGAGCGTGCGGGCGCTCAGGCGGTCGGAGA-GATCGGTCGGAGAGGCATAATG
1 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGATCGATCGGAGAAGCATAATG
* * * * * * *
25581982 TGCAAG-TCGGGGATCA-ACTCGATCCCGCTCTATGTGCTGTCGATCCCACT-ATCAGTCCTGCT
66 CGCAAGCT-GGGGATCAGACTAGATCCC-CTCCACGTGCTATCGATCCCACTGCT-AGTCCTGCC
* *
25582044 GCCACAACCCTCGACCCGATTAGGG-CATAGACATGGACTGTACTCCATATGCCCAAGC
128 GCCACAACCCTCGACCCGACT-GGGTCATAGACATGGAATGTACTCCATATGCCCAAGC
* *
25582102 CAACCCATGAAACGAGCGTGCGGACGCTCAGCCGACCGGAGAGGCT-GATCGGAGAAGCATAATG
1 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGATCGATCGGAGAAGCATAATG
* * * * *
25582166 CGCAAGCTGGGGATCAGCCTAGTTCCCCTCCGCGTGCTATCGATCCCGCTGCTGGTCCTGCCGCC
66 CGCAAGCTGGGGATCAGACTAGATCCCCTCCACGTGCTATCGATCCCACTGCTAGTCCTGCCGCC
** * * *
25582231 ACAACCCTCGGTCCGACTGGGTCTTAGACATGGAATGTACTCCGTATGCCTAAGC
131 ACAACCCTCGACCCGACTGGGTCATAGACATGGAATGTACTCCATATGCCCAAGC
* * * *
25582286 CAACCCACT-AAACGAGCATGCGGGTGCTCAGCCAACCGAAGAGG
1 CAACCCA-TGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG
25582330 TAGAATGCGT
Statistics
Matches: 190, Mismatches: 32, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
183 3 0.02
184 175 0.92
185 12 0.06
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (185 bp):
CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGATCGATCGGAGAAGCATAATG
CGCAAGCTGGGGATCAGACTAGATCCCCTCCACGTGCTATCGATCCCACTGCTAGTCCTGCCGCC
ACAACCCTCGACCCGACTGGGTCATAGACATGGAATGTACTCCATATGCCCAAGC
Found at i:25582460 original size:26 final size:26
Alignment explanation
Indices: 25582410--25582462 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25582400 CCAGTTCAAT
*
25582410 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACCTCGTATG
*
25582436 CTTAGACTGGGGATGAACACT-GTATG
1 CTTAGACTGGGAATGAAC-CTCGTATG
25582462 C
1 C
25582463 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCTCGTATG
Found at i:25582970 original size:26 final size:26
Alignment explanation
Indices: 25582929--25582981 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25582919 CCGGTCTGAT
25582929 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
25582955 CTTAGACTATGG-ATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
25582981 C
1 C
25582982 CTAAATCGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:25584097 original size:26 final size:26
Alignment explanation
Indices: 25584068--25584120 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25584058 CAGGTCCGAT
*
25584068 CTTACACTGGGAATTAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* * *
25584094 CTTAGACTGGGGATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
25584120 C
1 C
25584121 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:25585307 original size:26 final size:26
Alignment explanation
Indices: 25585271--25585321 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25585261 TCGATCTTAA
*
25585271 ACTGGGAATGAACTCCGTATGCCTAG
1 ACTGGGAATGAACTCCATATGCCTAG
*
25585297 ACTGGGGATGAACTCCATATGCCTA
1 ACTGGGAATGAACTCCATATGCCTA
25585322 AGTCAACCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (26 bp):
ACTGGGAATGAACTCCATATGCCTAG
Found at i:25585673 original size:26 final size:26
Alignment explanation
Indices: 25585621--25585673 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
25585611 CCGATTTGAT
* *
25585621 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATCAACTCCGCATG
* * *
25585647 CTTAGACTGGGGATCAACTTCGCATG
1 CTTAGACTGAGAATCAACTCCGCATG
25585673 C
1 C
25585674 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATCAACTCCGCATG
Found at i:25586094 original size:355 final size:349
Alignment explanation
Indices: 25584949--25586080 Score: 1239
Period size: 355 Copynumber: 3.2 Consensus size: 349
25584939 CTGGTCTGAT
* * * * * *
25584949 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACTCACGAAACGAGCGTGCGGACGCTGAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
25585014 CGATCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCTGATCCC-CT-T-TTG-CG---T-ACT
66 CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCTCTCTGCTGACGATCTCGCT
* * * **
25585071 GCCGGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGC
131 GCCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTA-CTCTATATGC
* * *
25585135 CTAAGCCAACCCATGAAACG-GACGTGTGGGCTTTCAGCCGGCCAGAGAGGCAGAATGCGCAAGC
195 CTAAGCCAACCCATGAAACGAG-CGTGCGGGCATTCAGCCGGCCGGAGAGGCAGAATGCGCAAG-
*
25585199 CGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCTACTGCCGCAACCCTTGATCTGGATCG
258 CGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCTACTGCCGCAACCCTCGATCTGG-TCG
* *
25585264 ATCTTAAACTGGGAATGAACTCCGTATGC
322 ATCTTAGACTGAGAATGAACTCCGTAT-C
* * * *
25585293 C-TAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCACTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
25585357 CGGCCGGAGAGGCATAATGTGCAAGCCGGGGATCAGCTCGGTCCCCCTCTACATGCT-ATCGATC
66 CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGAT--CCCTCT-C-TGCTGA-CGATC
* * * * * *
25585421 CCGCTACCGATCCTGCTACCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGTACTCTGT
126 TCGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCTAT
*** *
25585486 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGCA
191 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCATTCAGCCGGCCGGAGAGGCAGAATGCGCA
* ** * * *
25585551 AGCAGGGGATCGGCCCGGTCCCCCCTGCATGCTGCCGATCCTACTGCCTCAACCCTCGATCCGAT
256 AGC-GGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCTACTGCCGCAACCCTCGATCTG-G
* *
25585616 TTGATCTTAGACTGAGAATGAACTCCGTATG
319 TCGATCTTAGACTGAGAATGAACTCCGTATC
* * * * *
25585647 CTTAGACTGGGGATCAACTTCGCATGCCTAAGTCAACCCACGAATCGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
25585712 CGACCGAAGAGGCATAATGCGTAAGTCGAGGATCCGCCCGATCCTCATTTCTCTGCTGACGATCT
66 CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCC-C---TCTCTGCTGACGATCT
* * * * *
25585777 CGCTGCCGATCTTGCTGCCACAACCCTCGGTCCGACAGGGGCTTAGACGTGAAATGTACTGTATA
127 CGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCTATA
* ** * * * * * *
25585842 TGCCGAAGCCAACCCACAAAATGAGCATGCGGGCATTCAGTCGACCGGAGAGTCAGAAT-CTACA
192 TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCATTCAGCCGGCCGGAGAGGCAGAATGC-GCA
* ** * * * *
25585906 AGTCGGGGATCGGCTCGGTCCCCATTGTGTGCTTTCGATCCTGCTGTCGCAACCCTCGATCTGGT
256 AG-CGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCTACTGCCGCAACCCTCGATCTGGT
* *
25585971 CCAATCTTAGACTAAGAATGAACTCCGTATC
320 -CGATCTTAGACTGAGAATGAACTCCGTATC
* *
25586002 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
25586067 CGACCAGAA-AGGCA
66 CGACC-GAAGAGGCA
25586081 AGATGCGTAA
Statistics
Matches: 648, Mismatches: 113, Indels: 43
0.81 0.14 0.05
Matches are distributed among these distances:
343 86 0.13
344 1 0.00
345 3 0.00
346 2 0.00
349 1 0.00
350 1 0.00
351 2 0.00
353 2 0.00
354 5 0.01
355 534 0.82
356 8 0.01
357 3 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (349 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCTCTCTGCTGACGATCTCGCT
GCCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCTATATGCC
TAAGCCAACCCATGAAACGAGCGTGCGGGCATTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCGG
GGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCTACTGCCGCAACCCTCGATCTGGTCGATCT
TAGACTGAGAATGAACTCCGTATC
Found at i:25587145 original size:26 final size:26
Alignment explanation
Indices: 25587116--25587168 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25587106 CCAATCCGAT
25587116 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25587142 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25587168 C
1 C
25587169 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25588371 original size:26 final size:26
Alignment explanation
Indices: 25588342--25588392 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25588332 CCGGTCTGAT
25588342 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
* *
25588368 CTTAGACTGGGGATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
25588393 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:25588759 original size:26 final size:26
Alignment explanation
Indices: 25588710--25588760 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
25588700 CGGTTCGATC
**
25588710 TTAGACTGGGAATGAACTTTGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
*
25588736 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
25588761 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:25588898 original size:186 final size:183
Alignment explanation
Indices: 25588568--25588913 Score: 410
Period size: 186 Copynumber: 1.9 Consensus size: 183
25588558 CATGGAATGT
* * * * *
25588568 ACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGTCGGAGAGGTAGA
1 ACTCCCTATGCCTAAGCCAACCCACGAAACGAACCTACGAGCACTCAGCCGGTCGGAGAGGCAGA
* * ** * *
25588633 ATGCGCAAGTCAGGGATTAGCCCGTCCCCCCTACGTGCTACCGATCCTGCTACCGCAACCTTCGA
66 ATACGCAAGCCAGGGACGAGCCCGTCCCCCCTACGTGCTACCGATCCTACTACCGCAACCCTCGA
* *
25588698 TCCGGTTCGATCTTAGACTGGGAATGAACTTTGTATGATTAGACTGGGGATGA
131 TCCGATTCGATCTTAGAATGGGAATGAACTTTGTATGATTAGACTGGGGATGA
* * * *
25588751 ACTCCGTATGCCTAAGTCAACCCATTGAAATGAACCTACGAGCACTCAGCCGGTCGGAGAGGCAG
1 ACTCCCTATGCCTAAGCCAACCCA-CGAAACGAACCTACGAGCACTCAGCCGGTCGGAGAGGCAG
* * ** *
25588816 AATACGCAAGCCGGGGACCGA-CCCGGTCCCCCCCTATGTGCTGTCGATCCTACTACTGCAACCC
65 AATACGCAAGCCAGGGA-CGAGCCC-GT-CCCCCCTACGTGCTACCGATCCTACTACCGCAACCC
*
25588880 TC-AGTTCGA-TCTGATCTTAGAATGGGAATGAACT
127 TCGA-TCCGATTC-GATCTTAGAATGGGAATGAACT
25588914 CCGTATGCAT
Statistics
Matches: 134, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
183 22 0.16
184 50 0.37
185 6 0.04
186 56 0.42
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.21
Consensus pattern (183 bp):
ACTCCCTATGCCTAAGCCAACCCACGAAACGAACCTACGAGCACTCAGCCGGTCGGAGAGGCAGA
ATACGCAAGCCAGGGACGAGCCCGTCCCCCCTACGTGCTACCGATCCTACTACCGCAACCCTCGA
TCCGATTCGATCTTAGAATGGGAATGAACTTTGTATGATTAGACTGGGGATGA
Found at i:25589037 original size:159 final size:160
Alignment explanation
Indices: 25588736--25589025 Score: 343
Period size: 159 Copynumber: 1.8 Consensus size: 160
25588726 CTTTGTATGA
* * * *
25588736 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATTGAAATGAACCTACGAGCACTCAGC
1 TTAGAATGGGAATGAACTCCGTATGCATAAGTCAACCCATCGAAATGAACCTACGAGCACTCAGC
* * ** *
25588801 CGGTCGGAGAGGCAGAATACGCAAGCCGGGGACCGACCCGGTCCCCCCCTATGTGCTGTCGATCC
66 CGATCGAAGAGGCAGAATACGCAAGCCGGGGACCGACCCGGTCCCCCCCTACATGCTGCCGATCC
* **
25588866 TACTACTGCAACCCTCAGTTCGATCTGATC
131 CACTACCACAACCCTCAGTTCGATCTGATC
* * *
25588896 TTAGAATGGGAATGAACTCCGTATGCATAAGTCAACCCA-CGAAATGAGCGTACG-G-ACGTTGA
1 TTAGAATGGGAATGAACTCCGTATGCATAAGTCAACCCATCGAAATGAACCTACGAGCAC--TCA
* * * * * * *
25588958 GCCGATCGAAGAGGCATAATATGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCATGCTGCCGAT
64 GCCGATCGAAGAGGCAGAATACGCAAGCCGGGGACCGACCCGGTCCCCCCCTACATGCTGCCGAT
25589023 CCC
129 CCC
25589026 GGTGCCACAA
Statistics
Matches: 108, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
157 2 0.02
158 1 0.01
159 69 0.64
160 36 0.33
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (160 bp):
TTAGAATGGGAATGAACTCCGTATGCATAAGTCAACCCATCGAAATGAACCTACGAGCACTCAGC
CGATCGAAGAGGCAGAATACGCAAGCCGGGGACCGACCCGGTCCCCCCCTACATGCTGCCGATCC
CACTACCACAACCCTCAGTTCGATCTGATC
Found at i:25589594 original size:26 final size:26
Alignment explanation
Indices: 25589553--25589605 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25589543 CCGATCCAGT
* *
25589553 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACACCGTATG
**
25589579 CTTAGACTGGGTATGAACACCGTATG
1 CTTAGACTGGAAATGAACACCGTATG
25589605 C
1 C
25589606 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACACCGTATG
Found at i:25589708 original size:342 final size:342
Alignment explanation
Indices: 25589360--25590342 Score: 1093
Period size: 342 Copynumber: 2.8 Consensus size: 342
25589350 GATCCCGCTG
* * * *
25589360 TCGGTCCTGCTACCACAAACCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCTGTATGCCT
1 TCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCT
* * *
25589425 AAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAACCGACCGGAGAGACAGAATGCGCAAGCCAG
66 AAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAG
* * * *
25589490 GTATCGGCCCGGTCCCCCTGCATGATGTCGATCCTGTTGCCGCAACCTTTGATCCGATCC-AGTC
131 G-ATCGGCCCGGTCCCCCTGCGTGAT-TCGATCCTGCTGCCGCAACCCTCGATCCGATCCGA-TC
* * * *
25589554 TTAGACTGGAAATGAACTCTGTATGCTTAGACTGGGTATGAACACCGTATGCCTAAGTCAACCCA
193 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
25589619 CAAAATGAGCGTGCGGGTGCTGAGTCGA-CCGAAGAGGCATAATGCGCAAGTCGGGGATCGGTCC
258 CGAAATGAGCGTGCGGGTGCTCAGTCGAGCCGAAGAGGCATAATGCGCAAGCCCGAGATCAG-CC
*
25589683 AG-TCCCCCTCTGCGTGCT-A
322 AGATCCCCCACTGCGTGCTCA
* * * *
25589702 TCGGTCCCGTTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATG-AGCTCCCTATGCC
1 TCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTA-CTCCGTATGCC
* * ** * * * * * *
25589766 TAAGCCAAACCACAAAACGGGTATGCAGACGCTCAGCTGGCCAGAGAGGCAGAATGCGCAATCCG
65 TAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCC-
** *
25589831 AGGATCGGCCCGGTCCCCCTGCGT-ACTATCGATCCTGCTATCGCAACCCTCGATCC-AGTCTGA
129 AGGATCGGCCCGGTCCCCCTGCGTGA-T-TCGATCCTGCTGCCGCAACCCTCGATCCGA-TCCGA
* *
25589894 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGGCTAAGTCAACC
191 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
* ** * * * * * *
25589959 CATGAAACAAGTGTGAGGATGCTCAG-CCAGCCGGAGAGGCATAATGCGTAAGCCCGAGATCAGC
256 CACGAAATGAGCGTGCGGGTGCTCAGTCGAGCCGAAGAGGCATAATGCGCAAGCCCGAGATCAGC
*
25590023 CCGATCCCCCACTGCGTGCTACCGA
321 CAGATCCCCCACTGCGTGCT--C-A
* *
25590048 TCCCGCTGACGATCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACGTGGAATGTACTCC
1 T----C-G--G-TCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCC
* * *
25590113 GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGATCGGAGAGGCAGAAT-CG
58 GTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGC-
* * * * * * * *
25590177 GCAAGTCAGGGATCGGTCTGATCCCACCTGCGTGCTACTGATCCTGCTGCCACAACCCTCGATGC
122 GCAAGCCA-GGATCGGCCCGGTCCC-CCTGCGTGATTC-GATCCTGCTGCCGCAACCCTCGATCC
*
25590242 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
184 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
*
25590307 GTCAACCAACGAAATGAGCGTGCGGGTGCTCAGTCG
249 GTCAACCCACGAAATGAGCGTGCGGGTGCTCAGTCG
25590343 GCCCCCCAAT
Statistics
Matches: 521, Mismatches: 93, Indels: 40
0.80 0.14 0.06
Matches are distributed among these distances:
341 8 0.02
342 270 0.52
343 4 0.01
346 2 0.00
350 1 0.00
351 1 0.00
353 3 0.01
354 114 0.22
355 117 0.22
356 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (342 bp):
TCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCT
AAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAG
GATCGGCCCGGTCCCCCTGCGTGATTCGATCCTGCTGCCGCAACCCTCGATCCGATCCGATCTTA
GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
AATGAGCGTGCGGGTGCTCAGTCGAGCCGAAGAGGCATAATGCGCAAGCCCGAGATCAGCCAGAT
CCCCCACTGCGTGCTCA
Found at i:25589924 original size:26 final size:26
Alignment explanation
Indices: 25589895--25589946 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
25589885 CCAGTCTGAT
25589895 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25589921 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25589947 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25590279 original size:26 final size:26
Alignment explanation
Indices: 25590250--25590302 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25590240 GCGGTCCGAT
25590250 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25590276 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25590302 C
1 C
25590303 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25591765 original size:159 final size:158
Alignment explanation
Indices: 25591392--25591856 Score: 384
Period size: 158 Copynumber: 2.9 Consensus size: 158
25591382 TCCGTATGCA
* * *
25591392 TAGACATGGATTGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
1 TAGACAGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
** * * * * * * * *
25591457 G-TTGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCCC-GTGC-CCCCTTTTGTGCTGTCAATCT
66 GCCAG-ACAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGT-CACCCC-TATGTGCTGCCGATCC
** ** * * * * **
25591519 TGCTGTCGGAACCCTCGAT-CTGATCCGATCT
128 TGCTACCACAACCCTCGGTCCGGCT-GGGGCT
* * * * *
25591550 TAGACAGGGAATGAATTCCATATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGAGCCG
1 TAGACAGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
** * * * * * *
25591615 ATC-GAAGAGGCATAATGCGCAAGTTGGGGATCGGCCCGGTCCCCCTCTATGTGCTGCCGGTCCT
66 GCCAG-ACAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCACCC-CTATGTGCTGCCGATCCT
* * *
25591679 GTTGCCACAACCCTTGGTCCGGCTGGGGCT
129 GCTACCACAACCCTCGGTCCGGCTGGGGCT
* * * * * * *
25591709 TAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACG-GGGATGTGGGCGCTCAGTC
1 TAGACAGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCG-TGCGGGCGCTCAGCC
* * *
25591773 GGCCAGACAGGCAGAATGCGTAAGCTGGGGATCAGCCCGGTCACCCCTGTGTGCTGTCGATCCTG
65 GGCCAGACAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCACCCCTATGTGCTGCCGATCCTG
25591838 CTACCACAACCCTCGGTCC
130 CTACCACAACCCTCGGTCC
25591857 AGTCTGATCT
Statistics
Matches: 244, Mismatches: 56, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
158 122 0.50
159 117 0.48
160 5 0.02
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
TAGACAGGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
GCCAGACAGGCAGAATGCGCAAGCTGGGGATCAGCCCGGTCACCCCTATGTGCTGCCGATCCTGC
TACCACAACCCTCGGTCCGGCTGGGGCT
Found at i:25591894 original size:26 final size:26
Alignment explanation
Indices: 25591865--25591917 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25591855 CCAGTCTGAT
25591865 CTTAGACTGGAAATGAACTCAGTATG
1 CTTAGACTGGAAATGAACTCAGTATG
** *
25591891 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCAGTATG
25591917 C
1 C
25591918 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCAGTATG
Found at i:25592792 original size:26 final size:26
Alignment explanation
Indices: 25592763--25592815 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25592753 CCGGTCTGAT
25592763 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25592789 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25592815 C
1 C
25592816 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25592870 original size:13 final size:13
Alignment explanation
Indices: 25592852--25592881 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
25592842 CAGGCACTCG
25592852 GCCTACCGGAGAA
1 GCCTACCGGAGAA
*
25592865 GCCTACCGGAGAG
1 GCCTACCGGAGAA
25592878 GCCT
1 GCCT
25592882 GCTGGAGAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.33, G:0.33, T:0.10
Consensus pattern (13 bp):
GCCTACCGGAGAA
Found at i:25593186 original size:26 final size:26
Alignment explanation
Indices: 25593157--25593209 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25593147 CCTGTCCGAT
25593157 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
25593183 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25593209 C
1 C
25593210 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25593557 original size:26 final size:26
Alignment explanation
Indices: 25593521--25593573 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25593511 TCGATCTTAT
25593521 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
25593547 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
25593573 C
1 C
25593574 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:25594096 original size:11 final size:11
Alignment explanation
Indices: 25594080--25594104 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
25594070 CGGTTAGGCT
25594080 CTCCGACGATG
1 CTCCGACGATG
25594091 CTCCGACGATG
1 CTCCGACGATG
25594102 CTC
1 CTC
25594105 TGACAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.40, G:0.24, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:25595015 original size:26 final size:26
Alignment explanation
Indices: 25594986--25595038 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25594976 GGCTCAAAAT
* *
25594986 CTTAGAC-TGGGAATGAGCTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25595012 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25595038 C
1 C
25595039 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25595554 original size:26 final size:26
Alignment explanation
Indices: 25595525--25595577 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25595515 CCGGTCTGAT
*
25595525 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25595551 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25595577 C
1 C
25595578 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25596767 original size:26 final size:26
Alignment explanation
Indices: 25596738--25596789 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
25596728 CCAGTCCGAT
25596738 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25596764 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25596790 ACTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25597135 original size:26 final size:26
Alignment explanation
Indices: 25597106--25597158 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25597096 CCGATCCGAT
25597106 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25597132 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25597158 C
1 C
25597159 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25598124 original size:159 final size:158
Alignment explanation
Indices: 25597828--25598455 Score: 599
Period size: 159 Copynumber: 4.0 Consensus size: 158
25597818 ATGTCCGTAT
* * * *
25597828 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * **
25597893 CCGGCCGGAGAGGCAGAATGCGCAAACCGGGGATCGACCCCATCCCCCCTTGCATGCTGTCGATC
66 CTGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTTGCATGCTGTCGATC
* *
25597958 TTGCTGCCACAACCCTTGGTCCGACGGGG
131 CTGCTGCCACAACCCTCGGTCCGAC-GGG
* * *
25597987 GCTTAGACATGGAATGAGCTCCCTATGGCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
25598052 CTGGTCAGAGAAGCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCCCGTGCTTACTGTCGATC
66 CTGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTTGCATGCTGTCGATC
* * * *
25598117 CTACTGCCGCAACCCTCGGTCCGGACTGA
131 CTGCTGCCACAACCCTCGGTCC-GACGGG
* *** * * *
25598146 TCTTAGAC-TAGGAATGAACTTTGTAT-GCATAAGTCAACCCACGAAACGAGCGTGTC-GGTGTT
1 GCTTAGACAT-GGAATGAACTCCCTATGGC-TAAGCCAACCCACGAAACGAGCGTG-CGGGCGCT
* * * * * * * * **
25598208 GAG-TCGACCGAAGAGGCATAATGCACAAGTCGAGGATCGACCCTGT-CCCCTTCTGCATGCTAC
63 CAGCT-GGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCT-TGCATGCTGT
* * * * *
25598271 CGGTCCCGTTGCCACAACCCTTGGTTC-AGCTGGG
126 CGATCCTGCTGCCACAACCCTCGGTCCGA-C-GGG
* * * *
25598305 GCTTAGACATGGAATGAGCTCCCTATGGCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
25598370 CCT-GCCGGAGAGGCAGAATGCGCAAGCC-AGGGATCGACCCGGT-CCCTCTTGCGTGTTGTCGA
66 -CTGGCCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGGTCCCCCCTTGCATGCTGTCGA
*
25598432 TCCTGCCGCCACAACCCTCGGTCC
129 TCCTGCTGCCACAACCCTCGGTCC
25598456 TGTCCAATCT
Statistics
Matches: 365, Mismatches: 90, Indels: 29
0.75 0.19 0.06
Matches are distributed among these distances:
157 1 0.00
158 38 0.10
159 318 0.87
160 7 0.02
161 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CTGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTTGCATGCTGTCGATC
CTGCTGCCACAACCCTCGGTCCGACGGG
Found at i:25598406 original size:318 final size:317
Alignment explanation
Indices: 25597829--25598490 Score: 821
Period size: 318 Copynumber: 2.1 Consensus size: 317
25597819 TGTCCGTATG
* *
25597829 CTTAGAC-ATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTTCGTATGCATAAGCCAACCCACGAAACGAGCGTGTCGGCGCTCAG
* * * * **
25597893 CCGGCCGGAGAGGCAGAATGCGCAAACCGGGGATCGACCCCATCCCCCCTTGCATGCTGTCGATC
65 CCGACCGAAGAGGCAGAATGCACAAACCGAGGATCGACCCCATCCCCCCTTGCATGCTACCGATC
** *
25597958 TTGCTGCCACAACCCTTGGTCCGACGGGGGCTTAGACATGGAATGAGCTCCCTATGGCTAAGCCA
130 CCGCTGCCACAACCCTTGGTCAGACGGGGGCTTAGACATGGAATGAGCTCCCTATGGCTAAGCCA
* *
25598023 ACCCACGAAACGGGCGTACGGGCGCTCAGCTGGTCAGAGAAGCAGAATGCGCAAGCCGAGGATCG
195 ACCCACGAAACGGGCGTACAGGCGCTCAGCTGGCCAGAGAAGCAGAATGCGCAAGCCGAGGATCG
* * * * **
25598088 ACTCGGTCCCCCCGTGCTTACTGTCGATCCTACTGCCGCAACCCTCGGTCCGGACTGAT
260 ACCCGGT-CCCCCGTGCGTACTGTCGATCCTACCGCCACAACCCTCGGTCCGGACCAAT
* * * * * *
25598147 CTTAGACTAGGAATGAACTTTGTATGCATAAGTCAACCCACGAAACGAGCGTGTCGGTGTTGAGT
1 CTTAGACTAGGAATGAACTTCGTATGCATAAGCCAACCCACGAAACGAGCGTGTCGGCGCTCAGC
* ** ** * *
25598212 CGACCGAAGAGGCATAATGCACAAGTCGAGGATCGACCCTGT-CCCCTTCTGCATGCTACCGGTC
66 CGACCGAAGAGGCAGAATGCACAAACCGAGGATCGACCCCATCCCCCCT-TGCATGCTACCGATC
* *
25598276 CCGTTGCCACAACCCTTGGTTCAG-CTGGGGCTTAGACATGGAATGAGCTCCCTATGGCTAAGCC
130 CCGCTGCCACAACCCTTGG-TCAGACGGGGGCTTAGACATGGAATGAGCTCCCTATGGCTAAGCC
* * * *
25598340 AACCCATGAAACGGGCGTGCAGGCGCTCAGCCT-GCCGGAGAGGCAGAATGCGCAAGCC-AGGGA
194 AACCCACGAAACGGGCGTACAGGCGCTCAG-CTGGCCAGAGAAGCAGAATGCGCAAGCCGA-GGA
* * ** * * *
25598403 TCGACCCGGTCCCTCTTGCGTGTTGTCGATCCTGCCGCCACAACCCTCGGTCCTGTCCAAT
257 TCGACCCGGTCCCCCGTGCGTACTGTCGATCCTACCGCCACAACCCTCGGTCCGGACCAAT
*
25598464 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTAGGAATGAACTTCGTATGC
25598491 TTAGACTGAG
Statistics
Matches: 292, Mismatches: 47, Indels: 11
0.83 0.13 0.03
Matches are distributed among these distances:
317 70 0.24
318 216 0.74
319 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (317 bp):
CTTAGACTAGGAATGAACTTCGTATGCATAAGCCAACCCACGAAACGAGCGTGTCGGCGCTCAGC
CGACCGAAGAGGCAGAATGCACAAACCGAGGATCGACCCCATCCCCCCTTGCATGCTACCGATCC
CGCTGCCACAACCCTTGGTCAGACGGGGGCTTAGACATGGAATGAGCTCCCTATGGCTAAGCCAA
CCCACGAAACGGGCGTACAGGCGCTCAGCTGGCCAGAGAAGCAGAATGCGCAAGCCGAGGATCGA
CCCGGTCCCCCGTGCGTACTGTCGATCCTACCGCCACAACCCTCGGTCCGGACCAAT
Done.