Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 263 of 402
Found at i:25598505 original size:26 final size:26
Alignment explanation
Indices: 25598464--25598516 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25598454 CCTGTCCAAT
*
25598464 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25598490 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
25598516 C
1 C
25598517 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25600057 original size:26 final size:26
Alignment explanation
Indices: 25600028--25600080 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25600018 CCGGTCTGAT
*
25600028 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
25600054 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
25600080 C
1 C
25600081 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:25601119 original size:26 final size:26
Alignment explanation
Indices: 25601090--25601142 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25601080 CCGGTCCGAT
* *
25601090 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25601116 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25601142 C
1 C
25601143 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25601750 original size:368 final size:366
Alignment explanation
Indices: 25601065--25601918 Score: 1068
Period size: 368 Copynumber: 2.3 Consensus size: 366
25601055 AGAGGCATAA
* *
25601065 TTCGCAACCCTCGGTCCGGTCCGATCTTAGGCTGGGAATGAACTCCGTATGCTTAGACTGGGGAT
1 TTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGAT
*
25601130 GAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATACGGGCACTCAGCCAGCCAAAGAGGCC
66 GAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCATACGGGCACTCAGCCAGCCAAAGAGGCC
* * * * * * * * *
25601195 GAATGGAGAGGCATAATGCATAAGCCGGGGATCAGCTCGGTCCCTCTCTACGTGCTATCGATCCC
131 GAATAGAAAAGCATAATGCACAAGCCGGGGATCAGCCCGGGCCCCCTCTACGTGCTACCAATCCC
* * *
25601260 GTTACGGGTCCTGCTGCCACAACCCTCGATTCGATTGGGGCTTAGACGTGGAATGTACTCCATAT
196 GTTACGGGTCCTGCTACCACAACCCTCGATCCGACTGGGGCTTAGACGTGGAATGTACTCCATAT
** **
25601325 GCCTAAGCCAACACACGAAACAAGCGTGCGGGTACTCAACTGGCCAAAGAAGTAGAATGCACAAG
261 GCCTAAGCCAACACACGAAACAAGCGTGCGGACACTCAACCAGCCAAAGAAGTAGAATGCACAAG
* *
25601390 CCGGGGATCGGCCCGGTCCCCCCTGCATGCTACCGATCTTG
326 CCGGGGATCGACCCGGTCCCCCCTGCATGCTACCGATCCTG
* *
25601431 CTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAATTTCGTATGCTTAGACTGGGG
1 -T-TCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
* ** * * **
25601496 ATGAACT-CATTATGCCTAAGTCAACCCAAGAAACGAGCATGCGGGTGCTCAGTC-GATCGGAGA
64 ATGAACTCCA-TATGCCTAAGTCAACCCAAGAAACGAGCATACGGGCACTCAGCCAG-CCAAAGA
* *
25601559 GGCCGACTAGAAAAGCATAATGCACAAGCCGGGGATCAGCCCGGGCCCCCTCTACGTGCTGCCAA
127 GGCCGAATAGAAAAGCATAATGCACAAGCCGGGGATCAGCCCGGGCCCCCTCTACGTGCTACCAA
* * *
25601624 TCTCGCTGT-C-GGTCCTGCTACCACAACCCTCGGTCCGACTGGGGTTTAGACGTGGAATGTACT
192 TCCCG-T-TACGGGTCCTGCTACCACAACCCTCGATCCGACTGGGGCTTAGACGTGGAATGTACT
* * * * * * ** *
25601687 CCGTATGCCTAAGCGAACCCACGAAACGAGCGTGCGGACGCTCAGCCAGCCGGAGAGGTAGAATG
255 CCATATGCCTAAGCCAACACACGAAACAAGCGTGCGGACACTCAACCAGCCAAAGAAGTAGAATG
* * * * * **
25601752 CGCAAGCTGGGGATCGACCTGGTCCCTCCTGCGTGCTGTCGATCCTG
320 CACAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTACCGATCCTG
* ** *
25601799 TTACTGCAACCCTCGATCTGGTTTGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGG
1 TT-C-GCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
* * * * *
25601864 ATGAACTCCATATGCCTAAGTTAACCCACGAAACGAGCATATGGACGCTCAGCCA
64 ATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCATACGGGCACTCAGCCA
25601919 ACTACAAAGG
Statistics
Matches: 414, Mismatches: 64, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
366 1 0.00
367 6 0.01
368 402 0.97
369 4 0.01
370 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (366 bp):
TTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGAT
GAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCATACGGGCACTCAGCCAGCCAAAGAGGCC
GAATAGAAAAGCATAATGCACAAGCCGGGGATCAGCCCGGGCCCCCTCTACGTGCTACCAATCCC
GTTACGGGTCCTGCTACCACAACCCTCGATCCGACTGGGGCTTAGACGTGGAATGTACTCCATAT
GCCTAAGCCAACACACGAAACAAGCGTGCGGACACTCAACCAGCCAAAGAAGTAGAATGCACAAG
CCGGGGATCGACCCGGTCCCCCCTGCATGCTACCGATCCTG
Found at i:25601878 original size:26 final size:26
Alignment explanation
Indices: 25601826--25601878 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25601816 CTGGTTTGAT
*
25601826 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
* *
25601852 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
25601878 C
1 C
25601879 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:25602576 original size:26 final size:26
Alignment explanation
Indices: 25602538--25602590 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25602528 GGCTCAAAAT
*
25602538 CTTAGACTGGGAATGAGCTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
25602564 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
25602590 C
1 C
25602591 CTAAGCCCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:25602933 original size:158 final size:159
Alignment explanation
Indices: 25602563--25602938 Score: 382
Period size: 159 Copynumber: 2.4 Consensus size: 159
25602553 AGCTTCGTAT
* * * * *
25602563 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCCACCAACGAAACGATCGTGCGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * *
25602628 CCGGCCGAAGAGGCAGAATGCGCATGCCGGGGATCGACCCAGTCCCCCCCTGCGGGCTGTCGATC
66 CCGGCCGAAGAGGCAGAATGAGCAAGCCGGGGATCGACCCAGTCCCCCCCTGCGGGCTGCCGATC
*** **
25602693 TTGCTGCCACAACCCTTGGTCCGATCCAA
131 CCACTGCCACAACCCTCAGTCCGATCCAA
* * * * * * *
25602722 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAAACCATGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
25602786 ACCGGTCGAAGAGGCATAATGAGCAAGTCGGGGATCGACCC-GATCCCCCTC-GCGTGCTGCC-A
65 ACCGGCCGAAGAGGCAGAATGAGCAAGCCGGGGATCGACCCAG-TCCCCCCCTGCGGGCTGCCGA
* * ****
25602848 GTCCCACTGCCACAACCCTCAGTTCGGTTGGG
129 -TCCCACTGCCACAACCCTCAGTCCGATCCAA
* * * *
25602880 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCGCGAAACGGGCGTGCGGGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
25602939 ACTCTGCTGG
Statistics
Matches: 172, Mismatches: 41, Indels: 9
0.77 0.18 0.04
Matches are distributed among these distances:
157 1 0.01
158 77 0.45
159 94 0.55
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGCCGAAGAGGCAGAATGAGCAAGCCGGGGATCGACCCAGTCCCCCCCTGCGGGCTGCCGATC
CCACTGCCACAACCCTCAGTCCGATCCAA
Found at i:25603080 original size:26 final size:26
Alignment explanation
Indices: 25603040--25603090 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25603030 CAGTCTGATC
25603040 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
* *
25603066 TTAGACTGGGTATGAACTTCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
25603091 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:25604064 original size:26 final size:26
Alignment explanation
Indices: 25604035--25604089 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
25604025 CGATCTGATT
*
25604035 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* * *
25604061 TTAGATTGGGGATGAATTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
25604087 TTA
1 TTA
25604090 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:25605240 original size:26 final size:26
Alignment explanation
Indices: 25605200--25605254 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
25605190 TAGTTTGATT
*
25605200 TTAGACTGGGAATGAACTGCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
25605226 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
25605252 TTA
1 TTA
25605255 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:25606227 original size:19 final size:19
Alignment explanation
Indices: 25606203--25606263 Score: 122
Period size: 19 Copynumber: 3.2 Consensus size: 19
25606193 ACCGACCAAA
25606203 GAGGCATAATGCACAAGCC
1 GAGGCATAATGCACAAGCC
25606222 GAGGCATAATGCACAAGCC
1 GAGGCATAATGCACAAGCC
25606241 GAGGCATAATGCACAAGCC
1 GAGGCATAATGCACAAGCC
25606260 GAGG
1 GAGG
25606264 ATTAGACCGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 42 1.00
ACGTcount: A:0.36, C:0.25, G:0.30, T:0.10
Consensus pattern (19 bp):
GAGGCATAATGCACAAGCC
Found at i:25606513 original size:26 final size:26
Alignment explanation
Indices: 25606484--25606535 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
25606474 CCGGTCTGAT
*
25606484 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25606510 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25606536 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25607900 original size:159 final size:157
Alignment explanation
Indices: 25607597--25608099 Score: 489
Period size: 159 Copynumber: 3.2 Consensus size: 157
25607587 GCTCCGTATG
* * *
25607597 CTTAGAC-GTGGAATGAACTCCGTATGCCTAAGCCAACCCACAGAATGAGCGTGCGGGCACTCAG
1 CTTAGACTG-GGAATGAACTCCGTATGCATAAGCCAACCCACA-AACGAGCGTGTGGGCACTCAG
* * * * *
25607661 CCGGCTGGAGAGGCAGAATGCGCAAGCCGGAGATCGACCCAGTCCCTCCCTGTGTGCTGTTGATT
64 CCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCTCCCTGCGTGCTGTCGATC
** *
25607726 CTGCTGGTGGAACCCTTGGCCTGGTCTGAT
129 CTGCTGCCGCAACCCTTGGCC-GGTCTGAT
* * * *
25607756 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACTCACGAAACGAGCGTGTGGGCATTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCAC-AAACGAGCGTGTGGGCACTCAGC
** * * * * *
25607821 CGACTAAAGAGGCATAATGCGCAAGCCGGGGATCAACCCAGTCCCTCTCTACGTGCTGTCGGTCC
65 CGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCTCCCTGCGTGCTGTCGATCC
* * * * ** * **
25607886 CGCTGCCACTACCCTCGGTCCGACCGGGG
130 TGCTGCCGCAACCCTTGG-CCGGTCTGAT
* * * *
25607915 ATTAGACAT-GGAATGAGCTCCCTATGCCA-AAGCCAACCCACAAAACG-GACGTGTGGGCGCTC
1 CTTAGAC-TGGGAATGAACTCCGTATG-CATAAGCCAACCCAC-AAACGAG-CGTGTGGGCACTC
* *
25607977 AGCCGA-TCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCC-GATCCC-CCCTGCGTGCTGTC
62 AGCCGACT-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAG-TCCCTCCCTGCGTGCTGTC
* *
25608039 GATCCTGCTGTCGCAACCCTCTGTCCGGTCTGAT
125 GATCCTGCTGCCGCAACCCT-TGGCCGGTCTGAT
*
25608073 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
25608100 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 64, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 55 0.20
159 206 0.76
160 7 0.03
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACAAACGAGCGTGTGGGCACTCAGCC
GACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCTCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTTGGCCGGTCTGAT
Found at i:25608102 original size:26 final size:26
Alignment explanation
Indices: 25608073--25608125 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25608063 CCGGTCTGAT
25608073 CTTAGACTGGGAATGAACT-CTGTATG
1 CTTAGACTGGGAATGAACTAC-GTATG
*
25608099 CTTAGACTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
25608125 C
1 C
25608126 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:25608382 original size:343 final size:342
Alignment explanation
Indices: 25607756--25609591 Score: 1390
Period size: 343 Copynumber: 5.2 Consensus size: 342
25607746 CTGGTCTGAT
* * * ** * * *
25607756 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACTCACGAAACGAGCGTGTGGGCATTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAAC
* * * *
25607821 CGACTAA-AGAGGCATAATGCGCAAGCCGGGGATCAACCCAGTCCCTCTCTACGTGCTGTCGGTC
66 CGGC-AAGAGAGGCATAATGCGCAAGCC-GGGATCAACCCTGTCCCTCTCTACATGCTGTCGATC
* * * * * * *
25607885 CCGCTGCCACTACCCTCGGTCCGACCGGGGATTAGACATGGAATG-AGCTCCCTATGCCAAAGCC
129 CTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCC
* * *
25607949 AACCCACAAAACG-GACGTGTGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGAT
193 AACCCACGAAACGAG-CGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGAT
* * *
25608013 CGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCTG-TCCGGTCTGATCTTA
257 CGGCTCGATCCCCCCTACGTGCTGTCGATCCTGCTATCGCAACCCTC-GATCCGGTCTGATCTTA
*
25608077 GACTGGGAATGAACTCTGTATG
321 GACTGGGAATGAACTCCGTATG
* * * *
25608099 CTTAGACTGGGGATGAACTACGTATGCCTAAGTCAACCCATGAAATGAACGTACGGGCACTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAAC
25608164 CGGCAAGAGAGGCATAATGCGCAAGCCAGGGATCAACCCTGTCCCTCTCTACATGCTGTCGATCC
66 CGGCAAGAGAGGCATAATGCGCAAGCC-GGGATCAACCCTGTCCCTCTCTACATGCTGTCGATCC
* * *
25608229 TGCTGCCACAACTCTCGGTCCGACTGGGGTTTAGACGTGGAATGTCCTCCGTATGCCTAAGCCAA
130 TGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAA
** * * * *
25608294 CTTACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGACAGAATGCGTAAGTCGGGGATCGG
195 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG
* * * * * *
25608359 CTCGATCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATCTGGTCCGATCTTAGATT
260 CTCGATCCCCCCTACGTGCTGTCGATCCTGCTATCGCAACCCTCGATCCGGTCTGATCTTAGACT
25608424 GGGAATGAACTCCGTATG
325 GGGAATGAACTCCGTATG
* * *
25608442 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAAC
* * * * * * *
25608507 AGGCCAGAGAAGTCGGTTGAAAGGTATAATGCGCAAGCCGAGGAT-TAGCATGGTCCCCCTCTGC
66 CGG-CA-AG-A-------G--AGGCATAATGCGCAAGCCG-GGATCAACCCT-GTCCCTCTCTAC
* * *
25608571 ATGCTATCAATCCAGCTACCGGTCTTGCTACCACAACCCTCGATCC-AGCTGGGGCTTAGACGTG
117 ATGCTGTCGAT-C--CT----G-C-TG---CCACAACCCTCGGTCCGA-CTGGGGCTTAGACGTG
** *
25608635 GAATGTACTATGTATGCCTAAAGCCAACCCACAAAACCGAGCGGTGCGGGCGCTCAGCCGACTCG
169 GAATGTACTCCGTATGCCT-AAGCCAACCCACGAAA-CGAGC-GTGCGGGCGCTCAGCCGA-TCG
* * **
25608700 GAGAGGGCA-AGATGC-CAAGCCAGGGGATC-GCTCCGGT-CCCCCTAACCGTGTTACCGATCCT
230 GAGA-GGCAGA-ATGCGCAAGCC-GGGGATCGGCT-CGATCCCCCCT-A-CGTGCTGTCGATCCT
* * *
25608761 CGCTACCGCAA-CCTCGCTCCGGTCTGATTTTAGACTGGGAAATG-ACTCCGTATG
289 -GCTATCGCAACCCTCGATCCGGTCTGATCTTAGACTGGG-AATGAACTCCGTATG
* * * * *** *
25608815 CTTAGACTGGGGATG-ACTACATATGCCCTCAGTCAACCCA-GAAAACCAAAGCGTGTAGGCTCT
1 CTTAGACTGGGGATGAACTCCGTATG-CCTAAGTCAACCCACG-AAA-C-GAGCGTACGGGCACT
** * * *
25608878 CAGCCGACCAGAGAGGCCGGCTGAAGAGGCATAATGCGCAAGCCGAGGATTAGCCCAGTCCCTCT
62 CA----ACC-----GG-C--AAG-AGAGGCATAATGCGCAAGCCG-GGATCAACCCTGTCCCTCT
* * * * * * *
25608943 CTGCATCCTGTC-AGTCCAGCTGCCACAACCCTTGGTCCGGCTGGGGCTTAGTCATGGAATG-AG
113 CTACATGCTGTCGA-TCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTA-
** * * * * * *
25609006 CTCTATATGCCTAAGCCAACCCATGAAACGGGTGTACGGGCGCTCAGCCGGTCGGAGAGGTAGAA
176 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAA
** ** *
25609071 TGCATAAGCCGGGGATCGATTCGATCCCCCCTACGTGCTGTCGATCCTGCTATCGTAACCCTC-A
241 TGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCGATCCTGCTATCGCAACCCTCGA
* * * *
25609135 GTCCAGTCTAATCTTAGACTGCGAATAAACTCCGTATG
306 -TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* *** **
25609173 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCTGTGAAACGAGCGTGTGGGCGCTTAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-ACGG-GC---A-
* ** * ** *
25609238 CGGTTGGAGAGGCCGGCCGGAGAGGCATAATGCGTAAGTCAAGGATC-AGCCTGGTCCCCCTCTG
60 C---T-CA-A--CCGGCAAGAGAGGCATAATGCGCAAG-CCGGGATCAACCCT-GT--CCCTCT-
* * * * *
25609302 CGTGTTGCCGAT-CTGCTGCTGGTCCTGCAGCCACAACCTTCGATCCGACTGGGGCTTAGACGTG
113 C----T-AC-ATGCTG-T-C-GATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTG
* * * * * ** * *
25609366 GAATGTACTTCGTACGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCACTCAGTTTG-CCGGAA
169 GAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCGATCGGAG
* * * * * * * *
25609430 AGGCAGAATGCGCAAGTCGGGGATCGACTCGATCCCTCCTACATGCTGTCAATCCTACTACCGTA
233 AGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCGATCCTGCTATCGCA
* *
25609495 ACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
298 ACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
25609540 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
25609592 GCAAGCGTTC
Statistics
Matches: 1192, Mismatches: 200, Indels: 178
0.76 0.13 0.11
Matches are distributed among these distances:
342 3 0.00
343 354 0.30
344 3 0.00
345 2 0.00
346 1 0.00
353 1 0.00
354 4 0.00
355 42 0.04
356 29 0.02
357 16 0.01
358 82 0.07
359 29 0.02
360 22 0.02
361 16 0.01
362 5 0.00
363 19 0.02
364 49 0.04
365 6 0.01
366 3 0.00
367 264 0.22
368 17 0.01
369 5 0.00
370 18 0.02
371 21 0.02
372 27 0.02
373 77 0.06
374 12 0.01
375 14 0.01
376 41 0.03
377 1 0.00
378 1 0.00
379 1 0.00
384 4 0.00
385 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (342 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAAC
CGGCAAGAGAGGCATAATGCGCAAGCCGGGATCAACCCTGTCCCTCTCTACATGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
TCGATCCCCCCTACGTGCTGTCGATCCTGCTATCGCAACCCTCGATCCGGTCTGATCTTAGACTG
GGAATGAACTCCGTATG
Found at i:25608445 original size:26 final size:26
Alignment explanation
Indices: 25608416--25608468 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25608406 CTGGTCCGAT
* *
25608416 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25608442 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25608468 C
1 C
25608469 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25608839 original size:25 final size:26
Alignment explanation
Indices: 25608790--25608840 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
25608780 CGGTCTGATT
* *
25608790 TTAGACTGGGAAATGACTCCGTATGC
1 TTAGACTGGGAAATGACTACATATGC
*
25608816 TTAGACTGGG-GATGACTACATATGC
1 TTAGACTGGGAAATGACTACATATGC
25608841 CCTCAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAAATGACTACATATGC
Found at i:25609440 original size:367 final size:368
Alignment explanation
Indices: 25608226--25609777 Score: 1033
Period size: 367 Copynumber: 4.2 Consensus size: 368
25608216 ATGCTGTCGA
* * * ** * *
25608226 TCCTGCTGCCACAACTCTCGGTCCGACTGGGGTTTAGACGTGGAATGTCCTCCGTATGCCTAAGC
1 TCCTGCAGCCACAACCCTCGATCCGACTGGGGCATAGACGTGGAATGTACTCCGTACGCCTAAGC
** * * * ** * * * ** *
25608291 CAACTTACGAAATGAGCGTGCGGGCGCTCAG-CCGATCGGAGAGACAGAATGCGTAAGTCGGGGA
66 CAACCCACGAAACGAGCGTGCGAGCACTCAGTTTG-CCGGAAAGGCAGAATGCACAAGCCGGGGA
* * * * ** * ** **
25608355 TCGGCTCGATCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATCTGGTCCGATCTTA
130 TCGACTCGATCCCCCCTACATGCTGTCAATCCTACTACCGTAACCCTCGATCCAGTCTAATCTTA
* * * * *
25608420 GATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGA
195 GACTGCGAATAAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
* ** * * * * * * ** * * * * * *
25608485 AACGAGCGTACGGGCGCTCAGCAGGCCAGAGAAGTCGG-TTGAAAGGTATAATGCGCAAGCCGAG
260 AACGAGCGTGCAAGCGTTCAACCGGCCGGAGAGGCCGGCCGGAGAGGCATAATACGTAAGTCAAG
* * * * ** * * *
25608549 GATTAGCATGGTCCCCCTCTGCATGCTATCAATCCAGCTACCGG
325 GATCAGCCTGATCCCCCTCTGCGTGCTGCCAATCCCGCTGCTGG
* * ** *
25608593 TCTTGCTA-CCACAACCCTCGATCC-AGCTGGGGCTTAGACGTGGAATGTACTATGTATGCCTAA
1 TCCTGC-AGCCACAACCCTCGATCCGA-CTGGGGCATAGACGTGGAATGTACTCCGTACGCCT-A
* * * ** *
25608656 AGCCAACCCACAAAACCGAGCGGTGCGGGCGCTCAG-CCGACTCGGAGAGGGCA-AGATGC-CAA
63 AGCCAACCCACGAAA-CGAGC-GTGCGAGCACTCAGTTTG-C-CGGA-AAGGCAGA-ATGCACAA
* * * ** * * * *
25608718 GCCAGGGGATCG-CTCCGGT-CCCCCTAACCGTGTTACCGATCCTCGCTACCGCAA-CCTCGCTC
122 GCC-GGGGATCGACT-CGATCCCCCCT-A-CATGCTGTCAATCCT-ACTACCGTAACCCTCGATC
* * * * * * * *
25608780 CGGTCTGATTTTAGACTGGGAA-ATGACTCCGTATGCTTAGACTGGGGATG-ACTACATATGCCC
182 CAGTCTAATCTTAGACTGCGAATA-AACTCCATATGCTTAGACTGGGGATGAACTCCGTATG-CC
* * * * * * * * *
25608843 TCAGTCAACCCA-GAAAACCAAAGCGTGTAGGC-TCTCAGCCGACCAGAGAGGCCGGCTGAAGAG
245 TAAGTCAACCCACG-AAA-C-GAGCGTGCAAGCGT-TCAACCGGCCGGAGAGGCCGGCCGGAGAG
* * * * * * * *
25608906 GCATAATGCGCAAGCCGAGGATTAGCC-CAGT---CC-CT-C-T-CTG-C-ATCCTG-T-C-AG
306 GCATAATACGTAAGTCAAGGATCAGCCTGA-TCCCCCTCTGCGTGCTGCCAATCCCGCTGCTGG
* * * * * * * * ** *
25608957 TCCAGCTGCCACAACCCTTGGTCCGGCTGGGGCTTAGTCATGGAATG-AGCTCTATATGCCTAAG
1 TCCTGCAGCCACAACCCTCGATCCGACTGGGGCATAGACGTGGAATGTA-CTCCGTACGCCTAAG
* * * * * * *** * * * *
25609021 CCAACCCATGAAACGGGTGTACGGGCGCTCAGCCGGTCGGAGAGGTAGAATGCATAAGCCGGGGA
65 CCAACCCACGAAACGAGCGTGCGAGCACTCAGTTTGCCGGAAAGGCAGAATGCACAAGCCGGGGA
* * * * *
25609086 TCGATTCGATCCCCCCTACGTGCTGTCGATCCTGCTATCGTAACCCTC-AGTCCAGTCTAATCTT
130 TCGACTCGATCCCCCCTACATGCTGTCAATCCTACTACCGTAACCCTCGA-TCCAGTCTAATCTT
* * ***
25609150 AGACTGCGAATAAACTCCGTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCTGTG
194 AGACTGCGAATAAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG
*** ** *
25609215 AAACGAGCGTGTGGGCGCTT-AACCGGTTGGAGAGGCCGGCCGGAGAGGCATAATGCGTAAGTCA
259 AAACGAGCGTGCAAGCG-TTCAACCGGCCGGAGAGGCCGGCCGGAGAGGCATAATACGTAAGTCA
* * * *
25609279 AGGATCAGCCTGGTCCCCCTCTGCGTGTTGCCGAT-CTGCTGCTGG
323 AGGATCAGCCTGATCCCCCTCTGCGTGCTGCCAATCCCGCTGCTGG
* * *
25609324 TCCTGCAGCCACAACCTTCGATCCGACTGGGGCTTAGACGTGGAATGTACTTCGTACGCCTAAGC
1 TCCTGCAGCCACAACCCTCGATCCGACTGGGGCATAGACGTGGAATGTACTCCGTACGCCTAAGC
* * *
25609389 CAACCCACGAAATGAGCGTGCGAGCACTCAGTTTGCCGGAAAGGCAGAATGCGCAAGTCGGGGAT
66 CAACCCACGAAACGAGCGTGCGAGCACTCAGTTTGCCGGAAAGGCAGAATGCACAAGCCGGGGAT
* ** *
25609454 CGACTCGATCCCTCCTACATGCTGTCAATCCTACTACCGTAACCCTCGATCTGGTCTGATCTTAG
131 CGACTCGATCCCCCCTACATGCTGTCAATCCTACTACCGTAACCCTCGATCCAGTCTAATCTTAG
* * *
25609519 ACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAA
196 ACTGCGAATAAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
* ** ** ** *
25609584 ATGAGCGTGCAAGCGTTCAGTCGGCCGGAGAGGTTGGTTGGAGAGGCATAATACGTAAGTCAGGG
261 ACGAGCGTGCAAGCGTTCAACCGGCCGGAGAGGCCGGCCGGAGAGGCATAATACGTAAGTCAAGG
* * *
25609649 ATCAGCTTGATCCCTCTCTGCGTGCTGTCAATCCCGCTGCTGG
326 ATCAGCCTGATCCCCCTCTGCGTGCTGCCAATCCCGCTGCTGG
* * * * *
25609692 TCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCATAGACGTGGATTGTACTCCGTATGCCTAAGC
1 TCCTGCAGCCACAACCCTCGATCCGACTGGGGCATAGACGTGGAATGTACTCCGTACGCCTAAGC
*
25609757 CACCCCACGAAACGAGCGTGC
66 CAACCCACGAAACGAGCGTGC
25609778 TGGTGTTCAG
Statistics
Matches: 945, Mismatches: 187, Indels: 105
0.76 0.15 0.08
Matches are distributed among these distances:
356 54 0.06
357 10 0.01
358 75 0.08
359 31 0.03
360 19 0.02
361 14 0.01
362 6 0.01
363 17 0.02
364 52 0.06
365 4 0.00
366 5 0.01
367 341 0.36
368 101 0.11
369 6 0.01
370 19 0.02
371 18 0.02
372 30 0.03
373 80 0.08
374 8 0.01
375 25 0.03
376 30 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (368 bp):
TCCTGCAGCCACAACCCTCGATCCGACTGGGGCATAGACGTGGAATGTACTCCGTACGCCTAAGC
CAACCCACGAAACGAGCGTGCGAGCACTCAGTTTGCCGGAAAGGCAGAATGCACAAGCCGGGGAT
CGACTCGATCCCCCCTACATGCTGTCAATCCTACTACCGTAACCCTCGATCCAGTCTAATCTTAG
ACTGCGAATAAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCAAGCGTTCAACCGGCCGGAGAGGCCGGCCGGAGAGGCATAATACGTAAGTCAAGG
ATCAGCCTGATCCCCCTCTGCGTGCTGCCAATCCCGCTGCTGG
Found at i:25610691 original size:159 final size:159
Alignment explanation
Indices: 25610407--25610898 Score: 369
Period size: 159 Copynumber: 3.1 Consensus size: 159
25610397 CTTAGACATA
* * * *
25610407 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTCAGTCAACCGGAGA
1 GAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAGTCAACCGAAGA
* * * * * *
25610472 GGTAGAATACGCAAGCCGGGGATCGACCTAGTCCCCTCTTGCGTGCTGTCGATCCTGCTGCCGCA
66 GGCAGAATACGCAAGCCGGGGATCGACCCAGTCCCCTCTTGCATGCTATCGATCCCGCTGCCACA
25610537 ACCCTCAATCCGATCCGATCTTAGATTGG
131 ACCCTCAATCCGATCCGATCTTAGATTGG
* * *
25610566 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGC-GAGCGCTGAG-CTAGCCGAA
1 GAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCAG-GCGCTCAGTC-AACCGAA
* * * *
25610629 GAGGCATAATGCGCAAGCCGGGGATC-AGCCCGGTCCCC-CTCTGCATGTTATC-AGTCCCGCTG
64 GAGGCAGAATACGCAAGCCGGGGATCGA-CCCAGTCCCCTCT-TGCATGCTATCGA-TCCCGCTG
* * * * ** *
25610691 CCATAACCCTCGATCC-AGCTGGGGCTTAGACAT-G
126 CCACAACCCTCAATCCGATC-CGATCTTAGA-TTGG
* * * ** * * * *** *
25610725 GAATTAGCTCCCTAACCCTAAGCCAACCCACGAAACCGA-CGTGCGGGCGCTCAGTCGGTCGGAG
1 GAATGAACTCCGTATGCATAAGCCAACCCACGAAA-CGAGCATGCAGGCGCTCAGTCAACCGAAG
* * * * * ** *
25610789 AGGCAGAATGCACAAGCTAGGGG-TCGGCCCAGTCCCCT-TGTG--TGCTACCGATCCTACTGCT
65 AGGCAGAATACGCAAGC-CGGGGATCGACCCAGTCCCCTCT-TGCATGCTATCGATCCCGCTGCC
* ** *
25610850 GCAACCCTTGATCCGATCTGATCTTAGATTGG
128 ACAACCCTCAATCCGATCCGATCTTAGATTGG
*
25610882 GAATGAACTCCATATGC
1 GAATGAACTCCGTATGC
25610899 TTAGACTGGG
Statistics
Matches: 257, Mismatches: 60, Indels: 34
0.73 0.17 0.10
Matches are distributed among these distances:
156 1 0.00
157 43 0.17
158 11 0.04
159 192 0.75
160 10 0.04
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
GAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAGTCAACCGAAGA
GGCAGAATACGCAAGCCGGGGATCGACCCAGTCCCCTCTTGCATGCTATCGATCCCGCTGCCACA
ACCCTCAATCCGATCCGATCTTAGATTGG
Found at i:25610908 original size:26 final size:26
Alignment explanation
Indices: 25610872--25610924 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25610862 CCGATCTGAT
*
25610872 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25610898 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25610924 C
1 C
25610925 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25611371 original size:367 final size:366
Alignment explanation
Indices: 25610695--25611375 Score: 868
Period size: 367 Copynumber: 1.9 Consensus size: 366
25610685 CCGCTGCCAT
* *
25610695 AACCCTCGATCCAGCTGGGGCTTAGACATGGAATTAGCTCCCTAACCCTAAGCCAACCCACGAAA
1 AACCCTCGATCCAGCTGGGGCTTAGACACGGAATGAGCTCCCTAACCCTAAGCCAACCCACGAAA
* * * * *
25610760 CCGACGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCACAAGCTAGGGGTCGGCCCAGTCCC
66 CCGACGTACGGGCGCTCAGCCGATCGAAGAGGCAGAATG-ACAAGCTAGGGGTCAGCCCAGTCCC
* * * * * * *
25610825 CTTGTGTGCTACCGATCCTACTGCTGCAACCCTTGATCCGATCTGATCTTAGATTGGGAATGAAC
130 CTTGCGTGCTACCGATCCTACTACAGCAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAAC
* * * *
25610890 TCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGTGGG
195 TCCACATGCTTAGACTGGGGATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGTGGGGG
* * * *
25610955 CACTCAGTCGACCGGAGAGGCCGGTCGGAGAGGCATAATGCATAAGTCGGGGATAAGCCCGATCC
260 CACTCAGTCGACCGAAAAGGCCGGTCGAAGAGGCATAATGCACAAGTCGGGGATAAGCCCGATCC
25611020 ATCTTTATGTGTTGTCGATCCCGTTGCCGGTCCTGCTACCAC
325 ATCTTTATGTGTTGTCGATCCCGTTGCCGGTCCTGCTACCAC
* * ** *
25611062 AACCCTCGGTCC-GACTTGGGCTTAGACACGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAA
1 AACCCTCGATCCAG-CTGGGGCTTAGACACGGAATGAGCTCCCTAACCCTAAGCCAACCCACGAA
** * * *
25611126 ATGGGCGTACGGGCGCTCAGCCGATCGAAGAGGCAGAACATG-CAAGC-CGGGGATCAGCCCGGT
65 ACCGACGTACGGGCGCTCAGCCGATCGAAGAGGCAG-A-ATGACAAGCTAGGGG-TCAGCCCAGT
* * * *
25611189 CCCCCTTGCGTGCTACCGATCTTGCTACAGC-AGCCTCGATCC-AGTCCGATCTTAGGCTGAGAA
127 -CCCCTTGCGTGCTACCGATCCTACTACAGCAACCCTCGATCCGA-TCCGATCTTAGACTGAGAA
* *
25611252 TGAACTCCGCATGCTTAGACTGGGGATGAACTACGTATGCCTAAGTCAACCCACGAAATGAGCGT
190 TGAACTCCACATGCTTAGACTGGGGATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * *
25611317 GGGGGCGCTCAGTCGGCCGAAAAGGCTGGTCTAAGAGGCGTAATGCGCAAGTCGGGGAT
255 GGGGGCACTCAGTCGACCGAAAAGGCCGGTCGAAGAGGCATAATGCACAAGTCGGGGAT
25611376 CAGCTTGAAA
Statistics
Matches: 264, Mismatches: 44, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
366 6 0.02
367 229 0.87
368 26 0.10
369 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (366 bp):
AACCCTCGATCCAGCTGGGGCTTAGACACGGAATGAGCTCCCTAACCCTAAGCCAACCCACGAAA
CCGACGTACGGGCGCTCAGCCGATCGAAGAGGCAGAATGACAAGCTAGGGGTCAGCCCAGTCCCC
TTGCGTGCTACCGATCCTACTACAGCAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACT
CCACATGCTTAGACTGGGGATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCGTGGGGGC
ACTCAGTCGACCGAAAAGGCCGGTCGAAGAGGCATAATGCACAAGTCGGGGATAAGCCCGATCCA
TCTTTATGTGTTGTCGATCCCGTTGCCGGTCCTGCTACCAC
Found at i:25612354 original size:26 final size:26
Alignment explanation
Indices: 25612325--25612377 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25612315 GGCTCAAAAT
* * *
25612325 CTTAGATTGGGAATGAGCTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
25612351 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
25612377 C
1 C
25612378 CTAATTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:25612728 original size:26 final size:26
Alignment explanation
Indices: 25612692--25612744 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25612682 CCGGTCCGAT
25612692 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
* *
25612718 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
25612744 C
1 C
25612745 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:25613783 original size:158 final size:159
Alignment explanation
Indices: 25613474--25613784 Score: 378
Period size: 158 Copynumber: 2.0 Consensus size: 159
25613464 ATGCCTAAGC
* * *
25613474 CAACCCACGAAACGAACGTGTAGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCTGGGGAT
1 CAACCCACGAAACGAACGTGCAGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCTGAGGAT
** * * *
25613539 CGACCCGGTCCCCCATTACGTGCTGTCGATCCTGCTATCACAACCCTCAGTTCTGTCTGATCTTA
66 CGACCCGGTCCCCCATTACGTGCTACCGATCATGCTATCACAACCCTCAGGTCTGTCCGATCTTA
*
25613604 GACCGGGAATGAACTCAGTATGCATATGT
131 GACCAGGAATGAACTCAGTATGCATATGT
* * ** * *
25613633 CAACCCACGAAACGAGCGTGCAGGCGCTTAGCCGGTCGAAGAGGCATAATGCGCAAG-TCGAGGA
1 CAACCCACGAAACGAACGTGCAGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCT-GAGGA
* ** *
25613697 TCGGCTTGG-CCCCCCTTACGTGCTACCGATCATGCTAGT-ACAACCCTC-GGTCTGATCCGATC
65 TCGACCCGGTCCCCCATTACGTGCTACCGATCATGCTA-TCACAACCCTCAGGTCTG-TCCGATC
* *
25613759 TTAGACTAGGAATGAACTCTGTATGC
128 TTAGACCAGGAATGAACTCAGTATGC
25613785 TTAGACTGGG
Statistics
Matches: 128, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
157 5 0.04
158 63 0.49
159 60 0.47
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
CAACCCACGAAACGAACGTGCAGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCTGAGGAT
CGACCCGGTCCCCCATTACGTGCTACCGATCATGCTATCACAACCCTCAGGTCTGTCCGATCTTA
GACCAGGAATGAACTCAGTATGCATATGT
Found at i:25613787 original size:26 final size:26
Alignment explanation
Indices: 25613758--25613810 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25613748 CTGATCCGAT
25613758 CTTAGACTAGGAATGAACT-CTGTATG
1 CTTAGACTAGGAATGAACTGC-GTATG
* *
25613784 CTTAGACTGGGGATGAACTGCGTATG
1 CTTAGACTAGGAATGAACTGCGTATG
25613810 C
1 C
25613811 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTGCGTATG
Found at i:25614179 original size:171 final size:170
Alignment explanation
Indices: 25613796--25614195 Score: 464
Period size: 171 Copynumber: 2.3 Consensus size: 170
25613786 TAGACTGGGG
* * *
25613796 ATGAACTGCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGATCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAA-CCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGG
* * * * * * *
25613861 CATAATGCGTAAGCCGGGGATCAACCTGGTCTCGCTCTACGTGCTATTGATCCTGTTATCGGTCC
65 CATAATGCGTAAGCCGAGGATCAACCTGGTCTCCCTCTACGTGCTATCGATCCCGCTACCAGTCC
25613926 TACTACCACAACCCTCGATCCGACTAGGGCTTAGACATGAA
130 TACTACCACAACCCTCGATCCGACTAGGGCTTAGACATGAA
* * *
25613967 ATGAACTCCGTATGCCTAAGCCATCACACGAAACGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAAC-CACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGG
* * * * * *
25614032 CATAATGCGTAAGTCGAGGATCAGCTTGGT-TCCCCTCTGCGTGCTGTCGATCCCGCTGCCAGTC
65 CATAATGCGTAAGCCGAGGATCAACCTGGTCT-CCCTCTACGTGCTATCGATCCCGCTACCAGTC
* * * *
25614096 CTGCTGCCACAACCCTCGGTCCGACT-GGGACTTAGA-AGTGGA
129 CTACTACCACAACCCTCGATCCGACTAGGG-CTTAGACA-TGAA
* * ** * *
25614138 ATGTACTCCGTATGCCTAAGCCAACCTATGAAATAAGCGTGCGGGTGCTCAACCGATC
1 ATGAACTCCGTATGCCTAAGCCAACC-ACGAAACGAGCGTGCGGGCGCTCAGCCGATC
25614196 CCCCTCTGCA
Statistics
Matches: 192, Mismatches: 32, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
170 7 0.04
171 185 0.96
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (170 bp):
ATGAACTCCGTATGCCTAAGCCAACCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGC
ATAATGCGTAAGCCGAGGATCAACCTGGTCTCCCTCTACGTGCTATCGATCCCGCTACCAGTCCT
ACTACCACAACCCTCGATCCGACTAGGGCTTAGACATGAA
Found at i:25614310 original size:133 final size:133
Alignment explanation
Indices: 25614063--25614315 Score: 384
Period size: 133 Copynumber: 1.9 Consensus size: 133
25614053 CAGCTTGGTT
* * *
25614063 CCCCTCTGCGTGCTGTCGATCCCGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGACT
1 CCCCTCTGCATGCTGTCAATCCCGCTACCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGACT
* * *
25614128 TAGAAGTGGAATGTACTCCGTATGCCTAAGCCAACCTATGAAATAAGCGTGCGGGTGCTCAACCG
66 TAGAAGTGGAATGTACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAACCG
25614193 ATC
131 ATC
*
25614196 CCCCTCTGCATGCTGTCAATCCCGCTACC-GATCCTGCTGCCACAACCCTCGGTCCGACTGGGGC
1 CCCCTCTGCATGCTGTCAATCCCGCTACCAG-TCCTGCTGCCACAACCCTCGGTCCGACTGGGAC
* * *
25614260 TTAGTCA-TGGAATGTACTCCATATGCCTAAGCCAACCCATGACACGAGCGTGCGGG
65 TTAG-AAGTGGAATGTACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGG
25614316 CACTCAGCTC
Statistics
Matches: 108, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
132 1 0.01
133 106 0.98
134 1 0.01
ACGTcount: A:0.20, C:0.34, G:0.24, T:0.21
Consensus pattern (133 bp):
CCCCTCTGCATGCTGTCAATCCCGCTACCAGTCCTGCTGCCACAACCCTCGGTCCGACTGGGACT
TAGAAGTGGAATGTACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAACCG
ATC
Found at i:25614514 original size:159 final size:159
Alignment explanation
Indices: 25614219--25614515 Score: 425
Period size: 159 Copynumber: 1.9 Consensus size: 159
25614209 TGTCAATCCC
* * * *
25614219 GCTACCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGTCATGGAATGTACTCCATAT
1 GCTACAGATCCTGCTGCCACAACCCTCGATCCGACTGGGGCCTAGACATGGAATGTACTCCATAT
* * * * *
25614284 GCCTAAGCCAACCCATGACACGAGCGTGCGGGCACTCAGCTCGTCGGAGAGGCAAAATGCGCAGG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCTCGCCCGAGAGGCAAAATGCGCAAG
*
25614349 TTGGGGATCGGCCTGGTCCCCCTCAATGT
131 TCGGGGATCGGCCTGGTCCCCCTCAATGT
* **
25614378 GCTACAGATCCTGCTGCCACAACCCTCGATCCGGCTGGGGCCTAGACATGGAATGTACTCTGTAT
1 GCTACAGATCCTGCTGCCACAACCCTCGATCCGACTGGGGCCTAGACATGGAATGTACTCCATAT
* * * *
25614443 GCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAG-TCGGCCCGAGAGGCAGAATGCGCAA
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCTC-GCCCGAGAGGCAAAATGCGCAA
25614507 GTCGGGGAT
130 GTCGGGGAT
25614516 TGACCCGATC
Statistics
Matches: 120, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
158 2 0.02
159 118 0.98
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTACAGATCCTGCTGCCACAACCCTCGATCCGACTGGGGCCTAGACATGGAATGTACTCCATAT
GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCTCGCCCGAGAGGCAAAATGCGCAAG
TCGGGGATCGGCCTGGTCCCCCTCAATGT
Found at i:25615587 original size:26 final size:26
Alignment explanation
Indices: 25615558--25615610 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25615548 CCGGTCCGAT
* *
25615558 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
25615584 CTTAGACTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
25615610 C
1 C
25615611 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:25616139 original size:158 final size:158
Alignment explanation
Indices: 25615765--25616150 Score: 357
Period size: 158 Copynumber: 2.4 Consensus size: 158
25615755 TCGCCCCCTA
* * ** * *
25615765 CGTGTTGTTGATCCTGCTGTCGCAACCCTTAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTG
1 CGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * *
25615830 TATGCATAAGTCAACCCACAAAATGAGCATGCGGGCACTGAGCCAGCCAAAGATGAATAATGTGC
66 TATGCATAAGTCAACCCACAAAACGAGCATGCGGGCACTCAGCCAGCCAAAGAGGAAGAATGTGC
*
25615895 AAGTTAGGGATCGGCTCGGTCCCCTCTG
131 AAGTCAGGGATCGGCTCGGTCCCCTCTG
* * * * * * * * ** * * *
25615923 CGAGCTGCCGGTCCCGCTGCCACAACCCTGGGTCTGGAT-GGGGCTTAGAGAT-GCAATGAGCTC
1 CGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGG-TCCGATCTTAGA-CTGGGAATGAACTC
* * * * * ** ** * * *
25615986 CCTATGCCTACGGT-AACCCACTAAACGGGTGTGCGGGTGCTCAGCCGGCCGAAGAGGTAGAATG
64 CGTATGCATA-AGTCAACCCACAAAACGAGCATGCGGGCACTCAGCCAGCCAAAGAGGAAGAATG
*
25616050 TGCAAGTCGGGGATCGGCTCGGT-CCCTCTTG
128 TGCAAGTCAGGGATCGGCTCGGTCCCCTC-TG
* *
25616081 CGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
1 CGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
25616146 TATGC
66 TATGC
25616151 TTAGACTGGG
Statistics
Matches: 171, Mismatches: 51, Indels: 12
0.73 0.22 0.05
Matches are distributed among these distances:
157 7 0.04
158 160 0.94
159 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
CGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCG
TATGCATAAGTCAACCCACAAAACGAGCATGCGGGCACTCAGCCAGCCAAAGAGGAAGAATGTGC
AAGTCAGGGATCGGCTCGGTCCCCTCTG
Found at i:25616175 original size:26 final size:26
Alignment explanation
Indices: 25616124--25616176 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25616114 CTGGTCTGAT
*
25616124 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25616150 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25616176 C
1 C
25616177 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25616231 original size:13 final size:13
Alignment explanation
Indices: 25616213--25616240 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
25616203 CAGGTGCTCA
25616213 GCCGATCGGAGAG
1 GCCGATCGGAGAG
25616226 GCCGATCGGAGAG
1 GCCGATCGGAGAG
25616239 GC
1 GC
25616241 ATAATGCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.25, G:0.46, T:0.07
Consensus pattern (13 bp):
GCCGATCGGAGAG
Found at i:25616486 original size:26 final size:26
Alignment explanation
Indices: 25616457--25616509 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25616447 TCGGTCCGAT
*
25616457 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTACGTATG
* *
25616483 CTTAGACTGGGGATGAACTACGTATG
1 CTTAGACTAGGAATGAACTACGTATG
25616509 C
1 C
25616510 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:25616840 original size:26 final size:26
Alignment explanation
Indices: 25616811--25616863 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25616801 CCGGTCCGAT
*
25616811 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* *
25616837 CTTAGACTGGGGATCAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
25616863 C
1 C
25616864 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:25619735 original size:26 final size:26
Alignment explanation
Indices: 25619706--25619758 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25619696 CCGATCCGAT
25619706 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25619732 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25619758 C
1 C
25619759 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25620107 original size:26 final size:26
Alignment explanation
Indices: 25620078--25620127 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
25620068 GTCTGATCTC
*
25620078 AGACT-GGGAATGAACTCCGTATGCTT
1 AGACTAGGG-ATGAACTCCATATGCTT
25620104 AGACTAGGGATGAACTCCATATGC
1 AGACTAGGGATGAACTCCATATGC
25620128 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
AGACTAGGGATGAACTCCATATGCTT
Found at i:25621315 original size:157 final size:159
Alignment explanation
Indices: 25620929--25621318 Score: 374
Period size: 159 Copynumber: 2.5 Consensus size: 159
25620919 GATCGACCTG
* * * * *
25620929 GTGTGCTGTCGATCCTACTGTCGCAACCAT-TGATTTGATCCGATCATAGACTGGGAATGAACTC
1 GTGTGCTATCGATCCTGCTGTCGCAACCCTCTG-TTTGATTCGATCTTAGACTGGGAATGAACTC
* ** * * * * *
25620993 CGTATGCATAAGTCAACCCATGAAACGAGTGTGCGGGCCCTGAGCCGGTCGAACAGGCATAATGC
65 CGTATGCTTAAACCAACCCATGAAACGAGCGTGCGGGCACTCAGCCAGTCGAACAGGCAGAATGC
* *
25621058 GCAAGCCGGGGATCAGCCCGATCCCTCTCT
130 GCAAGCCGGAGATCAGCCCGATCCCGCTCT
* * * * * * ** * ** *
25621088 GGGTGCTACCGATCCCGCTGCCACAACCCTCGGTTTGGCTGGGGCTTAGACAT-GGAATGAGCTC
1 GTGTGCTATCGATCCTGCTGTCGCAACCCTCTGTTTGATTCGATCTTAGAC-TGGGAATGAACTC
* * * * *
25621152 CCTATGCTTAAACCAACCCATGAAATGGGCGTGGGGGCACTCAGCCAGTCGAAGAGGCAGAATGC
65 CGTATGCTTAAACCAACCCATGAAACGAGCGTGCGGGCACTCAGCCAGTCGAACAGGCAGAATGC
* * * *
25621217 GTAAGTC-GATATCGGCCCGATCCCGC-CT
130 GCAAGCCGGAGATCAGCCCGATCCCGCTCT
* ** *
25621245 GTGTGCTATCGATCTTGCTGTCGCAACCCTCTGTCCGATTCGATCTTAGACTGGGAATGAACTCT
1 GTGTGCTATCGATCCTGCTGTCGCAACCCTCTGTTTGATTCGATCTTAGACTGGGAATGAACTCC
25621310 GTATGCTTA
66 GTATGCTTA
25621319 GATTGGGGAT
Statistics
Matches: 175, Mismatches: 53, Indels: 8
0.74 0.22 0.03
Matches are distributed among these distances:
156 1 0.01
157 57 0.33
158 15 0.09
159 100 0.57
160 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (159 bp):
GTGTGCTATCGATCCTGCTGTCGCAACCCTCTGTTTGATTCGATCTTAGACTGGGAATGAACTCC
GTATGCTTAAACCAACCCATGAAACGAGCGTGCGGGCACTCAGCCAGTCGAACAGGCAGAATGCG
CAAGCCGGAGATCAGCCCGATCCCGCTCT
Found at i:25621325 original size:26 final size:26
Alignment explanation
Indices: 25621289--25621341 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25621279 CCGATTCGAT
25621289 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
25621315 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
25621341 C
1 C
25621342 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:25621504 original size:26 final size:26
Alignment explanation
Indices: 25621475--25621528 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
25621465 GGTCTGATCT
25621475 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCTGTATGCC
*
25621501 TAGACTGGGGATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCTGTATGCC
25621527 TA
1 TA
25621529 TGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCC
Found at i:25621890 original size:26 final size:26
Alignment explanation
Indices: 25621840--25621892 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25621830 CCGTTTTGAT
**
25621840 CTTAGACTGGGAATGAACTTTGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
* *
25621866 CTTAGATTGGGGATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
25621892 C
1 C
25621893 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:25622152 original size:12 final size:11
Alignment explanation
Indices: 25622134--25622164 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
25622124 GCGGTTCGGG
25622134 ATTTTTTTAAA
1 ATTTTTTTAAA
25622145 ATTTTTTTAAA
1 ATTTTTTTAAA
25622156 ATTTTTTTA
1 ATTTTTTTA
25622165 GAAAGAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
ATTTTTTTAAA
Found at i:25622994 original size:159 final size:158
Alignment explanation
Indices: 25622600--25623040 Score: 397
Period size: 159 Copynumber: 2.8 Consensus size: 158
25622590 AGCTTCGTAT
* *
25622600 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACAAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * *
25622665 CCGGCCGGAGAGGCAAAATGCACAAGCCGGGGATTGACCCAGTCCCCCCTACGTGCTGTCGATCT
66 CCGGCCAGAGAGGCAAAATGCACAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCCAGCC
* ** * * ** *
25622730 TGCTGTCGCAACACTCGATCCGGTTTGA
131 CGCTACCACAACACTCGATCAGACTAGA
* * * * * * *
25622758 TCTTAGA-ATGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * **
25622822 GCCGATG-GA-AGAGGCATAATGCCCAAGCCGGGGATCGACCCGGTCACCCTCTGTGTGCTG-CC
65 ACCG--GCCAGAGAGGCAAAATGCACAAGCCGGGGATCGACCCAGTC-CCCCCTACGTGCTGTCC
* * * *
25622884 AGCGCCGCTACCACAACCCTGGGTCAGACTAGG
127 AGC-CCGCTACCACAACACTCGATCAGACTAGA
* ** *
25622917 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* ** * * *
25622982 CCGGCCAGAGAGGCAGAATGTGCAAGCCAGGGATCGA-CCTGATCCCCCTTACGTGCTGT
66 CCGGCCAGAGAGGCAAAATGCACAAGCCGGGGATCGACCCAG-TCCCCCCTACGTGCTGT
25623041 TGATCCTGCT
Statistics
Matches: 217, Mismatches: 56, Indels: 19
0.74 0.19 0.07
Matches are distributed among these distances:
157 3 0.01
158 104 0.48
159 107 0.49
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGCCAGAGAGGCAAAATGCACAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCCAGCC
CGCTACCACAACACTCGATCAGACTAGA
Found at i:25623474 original size:26 final size:26
Alignment explanation
Indices: 25623438--25623498 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
25623428 CTCGATCCGG
*
25623438 TCCGTATGCTTAGACTGGGGATGAGC
1 TCCGTATGCTTAGACTGGGGATGAAC
25623464 TCCGTATGCTTAGACTGGGGATGAAC
1 TCCGTATGCTTAGACTGGGGATGAAC
25623490 TCCGTATGC
1 TCCGTATGC
25623499 CTAAGTCAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGGATGAAC
Found at i:25624287 original size:871 final size:869
Alignment explanation
Indices: 25622573--25624403 Score: 2332
Period size: 871 Copynumber: 2.1 Consensus size: 869
25622563 GTGGCTCAAA
*
25622573 ATCTTAGATTGGGAATGAGCTTCGTATGCTTAGACAT-GGAATGAACTCTGTATGCCTAAG-CTA
1 ATCTTAGATTGGGAATGAGCTTCGTATGCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTC-A
* *
25622636 ACCCACAAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAAAATGCACAAGCCGGGGATTG
64 ACCCACAAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAAAATGCACAAGCCGGGGATTG
* * * * *
25622701 ACCCAGTCCCCCCTACGTGCTGTCGATCTTGCTGTCGCAACACTCGATCCGGTTTGATCTTAGAA
129 ACCCAGTCCCACCTACGTGCTGTCGATCCTACTGCCGCAACACTCGATCCGGTTCGATCTTAGAA
* * * *
25622766 TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTGTGGGCGCTGAGCCGATGGA
194 TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCATGCGGGCGCTAAGCCGATGGA
* * * *
25622831 AGAGGCATAATGCCCAAGCCGGGGATCGACCCGGTCACCCTCTGTGTGCTGCCAGCGCCGCTACC
259 AGACGCATAATGCCCAAGCCGGGGATCGACCCAGTCACCCTCTGCGTGCTGCCAGCGCCGCTAAC
* * * *
25622896 ACAACCCTGGGTCAGACTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGA
324 ACAACCCTCGATCAGACTAGGGCTTAGACATGGAATGAGCTCCCTATACCTAAGCCAACACACGA
* * * *
25622961 AACGGGCGTGCGGGCGCTCAACCGGCCAGAGAGGCAGAATGTGCAAGCCAGGGATCGACCTGATC
389 AACCGACGTGCGGGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGACC
* * * * * * *
25623026 CCCCTTACGTGCTGTTGATCCTGCTGTCGCAACCCTCGGTTCGGTCCGATCTTAGGCTGTGAATG
454 CCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAATG
* * * ** * *
25623091 AACTCCGTATGCTTAGACTAGGGATGAACTTCGTATGCCTAACTCAACCCATTAAATGAGCGTGT
519 AACTCCATATGCTTAGACTAGGGATGAACTCCATATGCCTAACTCAACCCACAAAACGAGCGTGA
* **
25623156 GGGCGCTCAGTCGGCCAGAGAGGCCAACCGGAGAGGCATAATGCGCAAGCTGGGGATCAGTCCGA
584 GGGCGCTCAGTCGGCCAGAGAGGCCAACCGAAGAGGCATAATGCGCAAGCTGGGGATCAACCCGA
* * * * * *
25623221 TCCCCCTTTGTGTGCTGTCGATCCCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGG
649 TCCCCCTCTGCGTGCTGTCGATCCCGCTGCCAGCCCGGCTGCCACAACCCTCGGTCCGACTGGGG
* * *
25623286 CTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
714 CTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACACACAAAACGAGCATGCGGGCGCTCAGC
* ***
25623351 CGACCAAAGAGGTAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTTACGTGCTGTTGATCCT
779 CGACCAAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTTACGTGCTACCGATCCT
* * *
25623416 ACTATTGTAACCCTCGATCCGGTCCG
844 ACCATCGTAACCCTCGATCCAGTCCG
* * * *
25623442 TATGCTTAGACTGGGGATGAGCTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
1 -AT-CTTAGATTGGGAATGAGCTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCA
* * ** * * **
25623507 ACCCACAAAATGAGCATGCGGGCGCTCGGCCGACCATAGAGGCAGAATGTGCAAGCCGGGGATTG
64 ACCCACAAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAAAATGCACAAGCCGGGGATTG
* * * * * * * *
25623572 GCTCGGTCCCACTTGCGTGCTGTCGATCCTACTGCCGCAAC-CTTTGGTCTGGTTCGATCTTAGA
129 ACCCAGTCCCACCTACGTGCTGTCGATCCTACTGCCGCAACAC-TCGATCCGGTTCGATCTTAGA
* * * *
25623636 CTGGGAATGAACT-TCGTATGCGTAAGTGAACCCATGAAACGAGCATGCGGGCGCTAAGCCGATT
193 ATGGGAATGAACTCT-GTATGCATAAGTCAACCCATGAAACGAGCATGCGGGCGCTAAGCCGATG
* * * * * * *
25623700 GAAGACGCATAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTCTGCGTGCTATCGATC-CCGTT
257 GAAGACGCATAATGCCCAAGCCGGGGATCGACCCAGTCACCCTCTGCGTGCT-GCCAGCGCCGCT
* *
25623764 AACATAACCTTCGATCTAG-CTAGGGCTTAGACATGGAATGAGCTCCCTATACCTAAGCCAACAC
321 AACACAACCCTCGATC-AGACTAGGGCTTAGACATGGAATGAGCTCCCTATACCTAAGCCAACAC
* * * * * *
25623828 ACGAAACCGACGTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCTAGGGATTGGTCC
385 ACGAAACCGACGTGCGGGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGA-TCGACC
* * *
25623893 -GACCCCCCCTGCGTGCTGTCGATCTTACTGCCGTAACCCTCGGTTCGATCCGATCTTAGACTGG
449 TGACCCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTTCGATCCGATCTTAGACTGG
* * * *
25623957 GAGTGGACTCCATATGCTTAGATTAGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAG
514 GAATGAACTCCATATGCTTAGACTAGGGATGAACTCCATATGCCTAACTCAACCCACAAAACGAG
*** *
25624022 CGTGAGGGCGCTCAG-CTGGCC-GAAGAGGCCGGTCGAAGAGGCATAATGTGCAAGCTGGGGATC
579 CGTGAGGGCGCTCAGTC-GGCCAG-AGAGGCCAACCGAAGAGGCATAATGCGCAAGCTGGGGATC
* * * *
25624085 AACCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTTCTAGCCCGGCTGTCACAACCCTCGGTCCG
642 AACCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCAGCCCGGCTGCCACAACCCTCGGTCCG
** *
25624150 ACTGGGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACACACGGAATGAGCATGCGGGC
707 ACTGGGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACACACAAAACGAGCATGCGGGC
* * ** * * *
25624215 GCTCAGTCGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCTCC-TATGTGCTA
772 GCTCAGCCGACCAAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCC-CCTTACGTGCTA
*
25624279 CCGATCCTACCATCGTAACCCTTGATCCAGTCCG
836 CCGATCCTACCATCGTAACCCTCGATCCAGTCCG
** *
25624313 ATCTTAGATTGGGAACAAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAAC
1 ATCTTAGATTGGGAATGAGCTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAAC
* **
25624378 CTAGGAAACGAGCGTGCGGGCGCTCA
66 CCACAAAACGAGCGTGCGGGCGCTCA
25624404 GCTGGTCGGA
Statistics
Matches: 815, Mismatches: 135, Indels: 23
0.84 0.14 0.02
Matches are distributed among these distances:
869 76 0.09
870 9 0.01
871 718 0.88
872 12 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (869 bp):
ATCTTAGATTGGGAATGAGCTTCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAAC
CCACAAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAAAATGCACAAGCCGGGGATTGAC
CCAGTCCCACCTACGTGCTGTCGATCCTACTGCCGCAACACTCGATCCGGTTCGATCTTAGAATG
GGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCATGCGGGCGCTAAGCCGATGGAAG
ACGCATAATGCCCAAGCCGGGGATCGACCCAGTCACCCTCTGCGTGCTGCCAGCGCCGCTAACAC
AACCCTCGATCAGACTAGGGCTTAGACATGGAATGAGCTCCCTATACCTAAGCCAACACACGAAA
CCGACGTGCGGGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGACCCC
CCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAA
CTCCATATGCTTAGACTAGGGATGAACTCCATATGCCTAACTCAACCCACAAAACGAGCGTGAGG
GCGCTCAGTCGGCCAGAGAGGCCAACCGAAGAGGCATAATGCGCAAGCTGGGGATCAACCCGATC
CCCCTCTGCGTGCTGTCGATCCCGCTGCCAGCCCGGCTGCCACAACCCTCGGTCCGACTGGGGCT
TAGACGTGGAATGTACTCCATATGCCTAAGCCAACACACAAAACGAGCATGCGGGCGCTCAGCCG
ACCAAAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTTACGTGCTACCGATCCTAC
CATCGTAACCCTCGATCCAGTCCG
Found at i:25624371 original size:368 final size:364
Alignment explanation
Indices: 25623786--25624773 Score: 1171
Period size: 368 Copynumber: 2.7 Consensus size: 364
25623776 GATCTAGCTA
* * * *
25623786 GGGCTTAGACATGGAATG-AGCTCCCTATACCTAAGCCAACACAC-GAAACCGA-CGTGCGGGCG
1 GGGCTTAGACGTGGAATGTA-CTCCATATGCCTAAGCCAACACACGGAAA--GAGCATGCGGGCG
* * * * *
25623848 CTCAG-CTGGCCGGAGAGGCAGAATGCGCAAGCTAGGGATTGGTCCGACCCCCCCTGCGTGCTGT
63 CTCAGTC-GGCCGGAGAGGCAGAATGCGTAAGC-GGGGATCGGCCCGATCCCCCCTGCGTGCTGT
* * * * * * *
25623912 CGATCTTACTGCCGTAACCCTCGGTTCGATCCGATCTTAGACTGGGAGTGGACTCCATATGCTTA
126 CGATCCTAC--CCGTAACCCTCGATCCG-TCCGATCTTAGACTGGGAATGAACTTCGTATGCTTA
* * * *
25623977 GATTAGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGAGGGCGCTCAGCTGGC
188 GACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGC
* * * * *
25624042 CGAAGAGGCCGGTCGAAGAGGCATAATGTGCAAG-CTGGGGATCAACCCGGTCCCCCTCTGCGTG
253 CGAAGAGGCCAGCCGAAGAGGCATAATGCGCAAGTC-GGGGATCAACCCGATCCCCCTCTACGTG
* * * * *
25624106 CTGTCGATCCCGCTTCTAG-CCCGGCTGTCACAACCCTCGGTCCGACTG
317 CTGTCGATCCCGCTGCCAGTCCC-ACTGCCACAACCCTCGATCCGACTG
*
25624154 GGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACACACGGAATGAGCATGCGGGCGCTC
1 GGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACACACGGAAAGAGCATGCGGGCGCTC
* ** **
25624219 AGTCGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCTCCTATGTGCTACCGAT
66 AGTCGGCCGGAGAGGCAGAATGCGTAAG-CGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGAT
* * **
25624284 CCTACCATCGTAACCCTTGATCCAGTCCGATCTTAGATTGGGAACAAACTTCGTATGCTTAGACT
130 CCTACC--CGTAACCCTCGATCC-GTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT
* * * * * *
25624349 GGGGATGAACTCTGTATGCCTAAGTCAACCTAGGAAACGAGCGTGCGGGCGCTCAGCTGGTCGGA
192 AGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGAA
* * * * *
25624414 GAGGCCAGCCGGAGAGGCATAATGCGCAAGTCGGTGATCAGCCCTATCCCTCTCTACGTGCTGTC
257 GAGGCCAGCCGAAGAGGCATAATGCGCAAGTCGGGGATCAACCCGATCCCCCTCTACGTGCTGTC
* * *
25624479 GATCCTGCTGCCGGTCTCACTGCCACAACCCTCGATCCGACTG
322 GATCCCGCTGCCAGTCCCACTGCCACAACCCTCGATCCGACTG
* ** *
25624522 GGGCTTAGACGTGGAATGTACACCGCATGCCTAAGCCAACCCACGGAAAGAGCATGCGGGCGCTC
1 GGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACACACGGAAAGAGCATGCGGGCGCTC
* * * * *
25624587 AGTCGACTGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCCTGCATGCTGTCGAT
66 AGTCGGCCGGAGAGGCAGAATGCGTAAG-CGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGAT
* *
25624652 CCTATTCCCGCAACCCTCGATCCGGTCCGATCATAGACTGGGAATGAAC-TCTGTATGCTTAGAC
130 CCTA--CCCGTAACCCTCGATCC-GTCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGAC
25624716 TAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
191 TAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
25624774 CGACCAGAGA
Statistics
Matches: 526, Mismatches: 81, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
366 1 0.00
367 4 0.01
368 509 0.97
369 10 0.02
370 2 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (364 bp):
GGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACACACGGAAAGAGCATGCGGGCGCTC
AGTCGGCCGGAGAGGCAGAATGCGTAAGCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
CTACCCGTAACCCTCGATCCGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGG
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGAAGAGG
CCAGCCGAAGAGGCATAATGCGCAAGTCGGGGATCAACCCGATCCCCCTCTACGTGCTGTCGATC
CCGCTGCCAGTCCCACTGCCACAACCCTCGATCCGACTG
Found at i:25624724 original size:26 final size:26
Alignment explanation
Indices: 25624685--25624735 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25624675 GGTCCGATCA
*
25624685 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
25624711 TAGACTAGGG-ATGAACTCCGTATGC
1 TAGACT-GGGAATGAACTCCGTATGC
25624736 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:25626241 original size:159 final size:158
Alignment explanation
Indices: 25625797--25626257 Score: 413
Period size: 158 Copynumber: 2.9 Consensus size: 158
25625787 ACAATGGTCC
* *
25625797 GGTCCCCCTCTACGTGCTACCGGTCCCGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACATG
1 GGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGGTCC-GCTAGGGCTTAGACATG
* * * * * *
25625862 GAATGAGCTCCCGATGCCTAAGCCAACCCACGAAACGGGCATACGGGCACTCAACCGGCTGGAGA
65 GAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAGCCGGCCGAAGA
* * * *
25625927 GGCAGAATACGTAAGCCGGGGATTGACCA
130 GGCAAAATACGCAAGCCGAGGATCGACCA
* *** * * ** * * ** * *
25625956 GGTCCCCC-CTGCATGCTGTTGATCCTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGATAGG
1 GGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGGTCCGCT-AGGGCTTAGACATG
* * * * * * * * * * * ** * * *
25626020 GAATAAACTCCGTACGCATAAGTCAAGCCGTGAAACGAGCTTGTGGGTGCTGAGCTGACCGAAGA
65 GAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAGCCGGCCGAAGA
* *
25626085 GGCATAATGCGCAAGCCGAGGATCGACCCA
130 GGCAAAATACGCAAGCCGAGGATCGA-CCA
* ** *
25626115 -GTCCCCCTTTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGGTTTGACTGGGGCTTAGACATG
1 GGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGGTCCG-CTAGGGCTTAGACATG
* * *
25626179 GAATGAGCTCCCTATGCCTAAGCCAATCCATGAAATGGGCGTGCGGGCACTCAGCCGGCCGAAGA
65 GAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAGCCGGCCGAAGA
25626244 GGCAAAATACGCAA
130 GGCAAAATACGCAA
25626258 ACTGGGAATC
Statistics
Matches: 219, Mismatches: 79, Indels: 8
0.72 0.26 0.03
Matches are distributed among these distances:
157 2 0.01
158 108 0.49
159 108 0.49
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCACAACCCTCGGTCCGCTAGGGCTTAGACATGG
AATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAGCCGGCCGAAGAG
GCAAAATACGCAAGCCGAGGATCGACCA
Found at i:25626965 original size:159 final size:158
Alignment explanation
Indices: 25626721--25627064 Score: 379
Period size: 159 Copynumber: 2.2 Consensus size: 158
25626711 ACTTCGCATG
* * * * * * *
25626721 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCATGCGGGTGCTCAGT
1 CTTAGAGTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACAAGCATGAGGGCGCTCAGC
* * * * **
25626786 CGATCGGAGAGGTAGAATGCATAAACC-GAGGATCGACCTGGTCCCTCCCTGTGTGCTGTCGATC
66 CGACCGGAGAGATAGAATGCACAAACCTG-GGATCGACCCGGTCCC-CCCTACGTGCTGTCGATC
25626850 CTACTATCGCAACCCTTGATTCGATCTGAT
129 CTACTATCGCAACCCTTGATTCGATCTGAT
* **
25626880 CTTAGAGTGGGAATGAACTCCGTAT-CCATAAGTCAAACCATGAAACAAGTGTGAGGGCGCTCAG
1 CTTAGAGTGGGAATGAACTCCGTATGCC-TAAGTCAAACCACGAAACAAGCATGAGGGCGCTCAG
* * * *
25626944 CCGGCCGGAGAGATAGAATGCACAAGCCTGGGATTGGCCCGGTCCCCCCTACGTGCTGTCGATCC
65 CCGACCGGAGAGATAGAATGCACAAACCTGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
* * * **
25627009 TGCTATCGCAACCCTCGA-TCAGGTCCAAT
130 TACTATCGCAACCCTTGATTC-GATCTGAT
* * *
25627038 TTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGAGTGGGAATGAACTCCGTATGC
25627065 TTAGACTGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 62 0.41
159 88 0.58
160 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.23
Consensus pattern (158 bp):
CTTAGAGTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACAAGCATGAGGGCGCTCAGC
CGACCGGAGAGATAGAATGCACAAACCTGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCT
ACTATCGCAACCCTTGATTCGATCTGAT
Found at i:25627082 original size:26 final size:26
Alignment explanation
Indices: 25627039--25627090 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25627029 AGGTCCAATT
25627039 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
* * *
25627065 TTAGACTGGGGATTAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
25627091 CTAAGTCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:25627270 original size:25 final size:26
Alignment explanation
Indices: 25627236--25627287 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
25627226 TCGGTCCGAT
25627236 CTTAGACTGGGAATGAAC-CCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25627261 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25627287 C
1 C
25627288 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25628340 original size:159 final size:158
Alignment explanation
Indices: 25627981--25628483 Score: 406
Period size: 158 Copynumber: 3.2 Consensus size: 158
25627971 AGCTTCGTAT
* * * * * *
25627981 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGAGTGCGGGCACTCAG
** * * *
25628046 TTGGCTGGAGATACAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTATCGATCC
66 CCGGCTGAAGAGACAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTATCGATCC
* * * *
25628111 TGCTGCCGCAACCCTTGGTCTAGTCCGA
131 CGCTGCCACAACCCTCGGTCCAGTCCGA
* * * *
25628139 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAATCCATGAAACGAGAGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGAGTGCGGGCACTCA
* * * * * ** * *
25628203 GCCGGCTGAAGAGGCATAATGTGCAAGCCAGGGATC-AGCCTGATCCCCTTCTGTGTGCTGTCGG
65 GCCGGCTGAAGAGACAGAATGCGCAAGCCAGGGATCGA-CCCGATCCCC-CCTACGTGCTATCGA
** *
25628267 TCCCGCTGCCACAACCCTCGGTCCAGTTGGG
128 TCCCGCTGCCACAACCCTCGGTCCAGTCCGA
* * * * *
25628298 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGAGTGCGGGCACTCAG
** * * * ** * * *
25628363 TTGGC-CAGAGAGGCAGAATGCGTAAATCGGGGATCAGTA--CGGTCCCCCCTACGTGCTACCGA
66 CCGGCTGA-AGAGACAGAATGCGCAAGCCAGGGATC-G-ACCCGATCCCCCCTACGTGCTATCGA
** * * * *
25628425 TCCTACTGCCGCAACCTTCAGTCCGGTCCGA
128 TCCCGCTGCCACAACCCTCGGTCCAGTCCGA
* * *
25628456 TCTTAGA-TTGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
25628484 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 70, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
157 3 0.01
158 143 0.54
159 118 0.44
160 1 0.00
162 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGAGTGCGGGCACTCAG
CCGGCTGAAGAGACAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTATCGATCC
CGCTGCCACAACCCTCGGTCCAGTCCGA
Found at i:25628486 original size:26 final size:26
Alignment explanation
Indices: 25628457--25628509 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25628447 CCGGTCCGAT
*
25628457 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25628483 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25628509 C
1 C
25628510 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25628854 original size:26 final size:26
Alignment explanation
Indices: 25628825--25628877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25628815 CCGATCTAAT
25628825 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
25628851 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
25628877 C
1 C
25628878 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:25628943 original size:368 final size:366
Alignment explanation
Indices: 25628259--25629148 Score: 1059
Period size: 368 Copynumber: 2.4 Consensus size: 366
25628249 CCTTCTGTGT
* * *
25628259 GCTGTCGGTCCCGCTGCCACAACCCTCGGTCCAGTTGGGGCTTAGACATGGAATG-AGCTCCCTA
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTACAGTTGGGGCTTAGACATGGAATGTA-CT-CGTA
* * * * * *
25628323 TGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCACTCAGTTGGCCAGAGAGGCAGAATGCGTAA
64 TGCCTAAGCCAACCCATGAAATGAGAGTGCGGGCACTCAGTCGGCCGGAGAGGCAGAATGCGCAA
** * ** * * *
25628388 ATCGGGGATCAGTACGGTCCCCCCTACGTGCTACCGATCCTACTGCCGCAACCTTCAGTCCGGTC
129 GCCGGGGATCGGCCCGGTCCCCCTTACGTGCTACCGATCCTACTGCCGCAACCCTCAGTCCGATC
* * *
25628453 CGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
194 CAATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* * ** * **
25628518 ACCCATGAAACGAGTGTGCAGGCACTCAGCCGATCGGAGAGGCAGGTCGGGGAGGCATAATGCGT
259 ACCCATGAAACGAGTGTG-AGGCACTCAGCCGACCGGAAAGGCAGACCGGAGAGGCATAATGCAC
* * ** * *
25628583 AAGTCGAGGTTCAACCCGGTCTTCCTCTGCGTGTTGTCGATCCC
323 AAGTCGAGGATCAACCCGATCCCCCTCTGCATGCTGTCGATCCC
* * * *
25628627 GCTGTCGGTCCTGCTGCCACAACCCTCGATACAGTTGAGGTTTAGACATGGATTGTACTCTGTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTACAGTTGGGGCTTAGACATGGAATGTACTC-GTAT
* * * *
25628692 GCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGTCGGCCGGAGAGGTAGAATGCACAAG
65 GCCTAAGCCAACCCATGAAATGAGAGTGCGGGCACTCAGTCGGCCGGAGAGGCAGAATGCGCAAG
* * * *
25628757 CCAGGGATCGGCCCGGTCCCCCTTGCGTGCTATCGATCCTGCTGCCGCAACCCTC-GATCCGATC
130 CCGGGGATCGGCCCGGTCCCCCTTACGTGCTACCGATCCTACTGCCGCAACCCTCAG-TCCGATC
*
25628821 TAATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
194 CAATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* * * * * *
25628886 ACCCATGAAATGAGCATGTG-GGCGCTCATCCGGCCGTAAAGGCCGACCGGAGAGGCATAATGCA
259 ACCCATGAAACGAG--TGTGAGGCACTCAGCCGACCGGAAAGGCAGACCGGAGAGGCATAATGCA
*
25628950 CAAGTCGAGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCCC
322 CAAGTCGAGGATCAACCCGATCCCCCTCTGCATGCTGTCGATCCC
* ** *
25628995 GCTGTCGGTCCTGCTGCCACAACCCTCGGTAC-GACTGGGGCTTAGACGCGAAATGTACGTCGTA
1 GCTGTCGGTCCTGCTGCCACAACCCTCGGTACAG-TTGGGGCTTAGACATGGAATGTAC-TCGTA
* * * ** * ** *
25629059 TGCCTTAGCCATCCCATGAAATGAGAGTACGGGTGCTCAGCCGATCGGAGAGACAGAATGCGCAA
64 TGCCTAAGCCAACCCATGAAATGAGAGTGCGGGCACTCAGTCGGCCGGAGAGGCAGAATGCGCAA
*
25629124 GCCGGGGATCGGCCTGGTCTCCCCT
129 GCCGGGGATCGGCCCGGTC-CCCCT
25629149 GCGCTCAGCC
Statistics
Matches: 439, Mismatches: 75, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
367 3 0.01
368 424 0.97
369 8 0.02
370 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (366 bp):
GCTGTCGGTCCTGCTGCCACAACCCTCGGTACAGTTGGGGCTTAGACATGGAATGTACTCGTATG
CCTAAGCCAACCCATGAAATGAGAGTGCGGGCACTCAGTCGGCCGGAGAGGCAGAATGCGCAAGC
CGGGGATCGGCCCGGTCCCCCTTACGTGCTACCGATCCTACTGCCGCAACCCTCAGTCCGATCCA
ATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
CCATGAAACGAGTGTGAGGCACTCAGCCGACCGGAAAGGCAGACCGGAGAGGCATAATGCACAAG
TCGAGGATCAACCCGATCCCCCTCTGCATGCTGTCGATCCC
Found at i:25630219 original size:159 final size:157
Alignment explanation
Indices: 25629811--25630252 Score: 448
Period size: 159 Copynumber: 2.8 Consensus size: 157
25629801 AGCTCCGCAT
* * * * * *
25629811 GCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
25629876 CCGACCGAAGAGGCAGAATGCGCAAGCTAGGGATCGACCTGGTCCACCCC-GACGTGCTG-TAGA
66 CCGACCGAAGAGGCAGAATGCGTAAGCGA-GGATCGACCT-GTCC-CCCCTG-CGTGCTGCTAGA
* * *
25629939 TCCTGCTGTCACAACCCTCAGTCCCGTCTGA
127 TCCCGCTGCCACAACCCTCAGTCCCGGCTGA
* * *
25629970 TCTTA-ATC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTG
1 GCTTAGA-CAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * *
25630033 AGCCGATCGAAGAGGCATATTGCGTAAGCCGAGGATCGACTCTGTCCCCCTCTGCGTGCTGCT-G
64 AGCCGACCGAAGAGGCAGAATGCGTAAG-CGAGGATCGAC-CTGTCCCCC-CTGCGTGCTGCTAG
* *
25630097 GTCCCGCTGCCACAACCCTC-GAT-CCGGCTAGG
126 ATCCCGCTGCCACAACCCTCAG-TCCCGGCT-GA
* * * * *
25630129 GCTTAGACATGGAATGATCTCCCTATGCATAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
25630194 CCGACCGAAGAGCCAGAATGAGTAAGTCGAAGATCGGCCCGGTCCCCCCTCCGTGCTGC
66 CCGACCGAAGAGGCAGAATGCGTAAG-CGAGGATC-GACCTGTCCCCCCTGCGTGCTGC
25630253 CGCAACCCTC
Statistics
Matches: 234, Mismatches: 37, Indels: 25
0.79 0.12 0.08
Matches are distributed among these distances:
158 21 0.09
159 203 0.87
160 10 0.04
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATGCGTAAGCGAGGATCGACCTGTCCCCCCTGCGTGCTGCTAGATCCC
GCTGCCACAACCCTCAGTCCCGGCTGA
Found at i:25630305 original size:26 final size:26
Alignment explanation
Indices: 25630276--25630328 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25630266 CTGGTCCGAT
*
25630276 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
25630302 CTTAGACTGGGGATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
25630328 C
1 C
25630329 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:25636365 original size:26 final size:26
Alignment explanation
Indices: 25636314--25636366 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25636304 CCGGTCTGAT
* *
25636314 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
25636340 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
25636366 C
1 C
25636367 CTAAGCCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:25637614 original size:159 final size:158
Alignment explanation
Indices: 25637065--25637685 Score: 549
Period size: 159 Copynumber: 3.9 Consensus size: 158
25637055 TTCGTATGTT
* * * *
25637065 TAGACATGCAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCG
1 TAGACATGGAATGAACCCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTCG
* * * ** * * *
25637130 ACCGGAAAGGCAGAATGTGCAAGCC-AGGGATCGACCCGGTCCCTCTTTGTGTGTTG-CAACTCC
66 ACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACTCGGTCCC-CCCTGCGTGCTGTCGA-TCC
* *
25637193 CGCTACCACAACCCTTGGTACGGCTGGGGCA
128 CGCTACCACAACCCTCGGTACGACTGGGGCA
* * * * * *
25637224 TAGACATGGAATGAGGCCCC-TATTCCTAAGCCAACCCACGAAACGGGTATGTGGGCACTCAGTC
1 TAGACATGGAATGA-ACCCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTC
* * * * * * **
25637288 GATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCTCTGT-CCCCCTGCGTGCTGCCGATCCTA
65 GACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCCG
* * * *** *
25637352 CTACCTCAACCCTTGGT-CTGGTCT-AATCT
130 CTACCACAACCCTCGGTAC--GACTGGGGCA
* * * * * * * *
25637381 TAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAACATACGGGCGCTGAGCC
1 TAGACAT-GGAATGAACCCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTC
** * * * * *
25637445 GATAGAAGAGGCATAATGCGCAAGCCGAGGATCGGCTCGGTCCCCCTCTGCATGCTGTCGGTCCC
65 GACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCC-CTGCGTGCTGTCGATCCC
*
25637510 GCTGCCACAACCCTCGGTACGACTGGGGCA
129 GCTACCACAACCCTCGGTACGACTGGGGCA
* * * * *
25637540 TAGACATGGAATGAGCCCCTTATACCTAAGCCAACCCACAAAACTG-GCGTGCGGGCGCTCAGTC
1 TAGACATGGAATGAACCCCGTATGCCTAAGCCAACCCACGAAAC-GAGCATGCGGGCGCTCAGTC
* * * *
25637604 GACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGAC-CTGGTCTCCCCTGCGTACTGTCGATCCT
65 GACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTC-GGTCCCCCCTGCGTGCTGTCGATCCC
25637668 GCTACCACAACCCTCGGT
129 GCTACCACAACCCTCGGT
25637686 CCGGTCTGAT
Statistics
Matches: 360, Mismatches: 88, Indels: 29
0.75 0.18 0.06
Matches are distributed among these distances:
156 5 0.01
157 108 0.30
158 46 0.13
159 195 0.54
160 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
TAGACATGGAATGAACCCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGTCG
ACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCCGC
TACCACAACCCTCGGTACGACTGGGGCA
Found at i:25637746 original size:26 final size:26
Alignment explanation
Indices: 25637696--25637748 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25637686 CCGGTCTGAT
**
25637696 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
25637722 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25637748 C
1 C
25637749 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25638164 original size:355 final size:355
Alignment explanation
Indices: 25637498--25638166 Score: 864
Period size: 355 Copynumber: 1.9 Consensus size: 355
25637488 CCCTCTGCAT
* * *
25637498 GCTGTCGGTCCCGCTGCCACAACCCTCGGTACGACTGGGGCATAGACATGGAATGAGCCCCTTAT
1 GCTGCCGGTCCCGCTGCCACAACCCTCGGTACGACTGGGGCATAGACATGGAATGAGCACCGTAT
* * * * *
25637563 ACCTAAGCCAACCCACAAAACTGGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGTAAG
66 ACCTAAGCCAACCCACAAAACTGGCGTACAGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAG
* * * * *
25637628 CCGAGGATCGACCTGGTCTCCCCTGCGTACTGTCGATCCTGCTACCACAACCCTCGGTCCGGTCT
131 CCGAGGATCGACCTGGTCCCCCCTACGTACTATCGATCCTGCTACCACAACCCTCGATCCGATCT
*** *
25637693 GATCTTAGACTAGGAATGAACTTTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAA
196 GATCTTAGACTAGGAATGAACTCCCTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAA
* * * *
25637758 CCCATGAAACGAGCATGCAGACGCTCAACCGGCCGGAAAGGCATAATGCGTAAGTCAGGGATCAG
261 CCCATGAAACGAGCAAGCAGACGCTCAACCGACCAGAAAGGCAGAATGCGTAAGTCAGGGATCAG
25637823 CCCGATCCCCCTCTACGTGCTGCCAATTCC
326 CCCGATCCCCCTCTACGTGCTGCCAATTCC
* *
25637853 GCTGCCGGTCCTGCTGCCACAACCCTCGGT-CTGACTGGGGCTTAGACATGGAATGTA-CACCGT
1 GCTGCCGGTCCCGCTGCCACAACCCTCGGTAC-GACTGGGGCATAGACATGGAATG-AGCACCGT
* * *
25637916 ATGCCTAAGCCAACCCACGAAAC-GAGCGTACAGGCGCTCAGCCGATCGAAGAGGCAGAATGCGC
64 ATACCTAAGCCAACCCACAAAACTG-GCGTACAGGCGCTCAGCCGACCGAAGAGGCAGAATGCGC
* * *****
25637980 AAGCCGGGGATCGA-CTCGGTCCCCCCTACGTGCTATCGATCCTGCTGTTGTAACCCTCGATCCG
128 AAGCCGAGGATCGACCT-GGTCCCCCCTACGTACTATCGATCCTGCTACCACAACCCTCGATCCG
* * *
25638044 ATCTGATCTTAGATTGGGAATGAACTCCCTATGCTTAGACT-GAGGATGAACTCTATATGCCTAA
192 ATCTGATCTTAGACTAGGAATGAACTCCCTATGCTTAGACTAG-GGATGAACTCCATATGCCTAA
* * ** * *
25638108 GTCAACCCACT-AAACGAGCAAGCGGGCGCTCAGTCGACCAGAGAGGCAGGATGCGTAAG
256 GTCAACCCA-TGAAACGAGCAAGCAGACGCTCAACCGACCAGAAAGGCAGAATGCGTAAG
25638167 CCGAGGATCG
Statistics
Matches: 266, Mismatches: 42, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
354 5 0.02
355 259 0.97
356 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (355 bp):
GCTGCCGGTCCCGCTGCCACAACCCTCGGTACGACTGGGGCATAGACATGGAATGAGCACCGTAT
ACCTAAGCCAACCCACAAAACTGGCGTACAGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAG
CCGAGGATCGACCTGGTCCCCCCTACGTACTATCGATCCTGCTACCACAACCCTCGATCCGATCT
GATCTTAGACTAGGAATGAACTCCCTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAA
CCCATGAAACGAGCAAGCAGACGCTCAACCGACCAGAAAGGCAGAATGCGTAAGTCAGGGATCAG
CCCGATCCCCCTCTACGTGCTGCCAATTCC
Found at i:25639163 original size:26 final size:26
Alignment explanation
Indices: 25639127--25639179 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25639117 CCTGTTCGAT
*
25639127 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
25639153 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
25639179 C
1 C
25639180 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:25640073 original size:26 final size:26
Alignment explanation
Indices: 25640044--25640094 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
25640034 GATCTAATCA
*
25640044 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
* *
25640070 TAGATTGGGGATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
25640095 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:25641279 original size:26 final size:26
Alignment explanation
Indices: 25641250--25641302 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25641240 CCAGTCCGAT
25641250 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25641276 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25641302 C
1 C
25641303 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25641810 original size:368 final size:368
Alignment explanation
Indices: 25641123--25642077 Score: 1209
Period size: 368 Copynumber: 2.6 Consensus size: 368
25641113 TCAAAATCTT
* * ** *
25641123 AGCCAACCCATGAAAGGAGCATGCGGGTGCTCAGTCGGCCAGAGAGGCAGAATGTGCAAGCCAGG
1 AGCCAACCCATGAAACGAGCATGCGGGTGCTCAGTCGGTCAGAGAGGCAGAATGCACAAGCCAAG
* * * * * * *
25641188 GATCGCCTCGATCCCCCTGCGTGCTGTCGATTCTACTGTCGCAACCCTCAGTCCAGTCCGATCTT
66 GATCGCCTCGGTCCCCCTACGTGCTGCCGATCCTGCTGTCGCAACCCTCAATCCAGTCTGATCTT
** *
25641253 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATG
131 AGACTGGGAATGAACTCCGTATGCTTAGACCAGGGATGAACTCCGTATGCCTAAGTCAACCCATG
* * * * *
25641318 ACACGAGCATGCGGGCACTCAGCCGGCCGGAGAGGTCGATCGAAAAGGCATAATGCGCAAGCCGG
196 AAACGAGCATGCGGGCGCTCAACCGGCCGGAGAGGCCGATCGAAAAGGCATAATGCGCAAGCCGA
* * * * * * *
25641383 GGATCAGCCCAGTCCTTCTCTACGTGTTGTCGATCTCGCTGTCGATCTTGCTGCCACAACCCTCG
261 GGATCAGCCCAGTCCCTCTCTACGTGCTGTCGATCCCACTATCGATCCTGCTACCACAACCCTCG
*
25641448 ATCCAACTGGGGCTTAGACATGGAATGTACTCCATATGCCT-A
326 ATCCAACTGAGGCTTAGACATGGAATGTACTCCATATGCCTCA
* ** *
25641490 AGCCAACCCATGAAACGAGCATGCGGGTGCTCAGCCAATCTGAGAGGCAGAATGCACAAGCCAAG
1 AGCCAACCCATGAAACGAGCATGCGGGTGCTCAGTCGGTCAGAGAGGCAGAATGCACAAGCCAAG
* * * * *
25641555 GATCGACTCGGTCTCCCCTACGTGCTACCGATCCTGCTGCCGTAACCCTCAATCCAGTTTGATCT
66 GATCGCCTCGGTC-CCCCTACGTGCTGCCGATCCTGCTGTCGCAACCCTCAATCCAGTCTGATCT
* * *
25641620 TAGATTAGGAATGAACTCCGTATGCTTAGACCAGGGATGAACTCCATATGCCTAAGTCAACCCAT
130 TAGACTGGGAATGAACTCCGTATGCTTAGACCAGGGATGAACTCCGTATGCCTAAGTCAACCCAT
* * * * * * *
25641685 GAAACGAGCATGTGGGCGCTTAACCGGCTGGAGAGGCCGGTCGGAGAGGCATAATGTGCAAGCCG
195 GAAACGAGCATGCGGGCGCTCAACCGGCCGGAGAGGCCGATCGAAAAGGCATAATGCGCAAGCCG
* *
25641750 AGGATCAGCCCAGTCCC-CTTCTACGTGCTGTTGATCCCACTATCGGTCCTGCTACCACAACCCT
260 AGGATCAGCCCAGTCCCTC-TCTACGTGCTGTCGATCCCACTATCGATCCTGCTACCACAACCCT
* * *** *
25641814 TGGTCTGGCTGAGGCTTAGACATGGAATGTACTCCGTATGCCTCA
324 CGATCCAACTGAGGCTTAGACATGGAATGTACTCCATATGCCTCA
* * * * * *
25641859 A-CCAACCCATGAAACGAGCGTACGGGTGCTCAATCGGTCGGAGAGGCAGAATACACAAGCCGAG
1 AGCCAACCCATGAAACGAGCATGCGGGTGCTCAGTCGGTCAGAGAGGCAGAATGCACAAGCCAAG
* * * * *
25641923 GATCAGCCT-GGTCCCTCAAGCGTACTGCCAATCCTGCTGTCGCAACCCTCGATCCAGTCTGATC
66 GATC-GCCTCGGTCCCCCTA-CGTGCTGCCGATCCTGCTGTCGCAACCCTCAATCCAGTCTGATC
* *
25641987 TTAGACTGGGAATGAACTCTGTATGCTTAGA-CTGGAGATGAACTCCGTATGCCTAAGTCAACCC
129 TTAGACTGGGAATGAACTCCGTATGCTTAGACCAGG-GATGAACTCCGTATGCCTAAGTCAACCC
*
25642051 ATGAAACGAGCGTGCGGGCGCTCAACC
193 ATGAAACGAGCATGCGGGCGCTCAACC
25642078 AAGCAGAGAT
Statistics
Matches: 500, Mismatches: 82, Indels: 11
0.84 0.14 0.02
Matches are distributed among these distances:
367 75 0.15
368 420 0.84
369 5 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (368 bp):
AGCCAACCCATGAAACGAGCATGCGGGTGCTCAGTCGGTCAGAGAGGCAGAATGCACAAGCCAAG
GATCGCCTCGGTCCCCCTACGTGCTGCCGATCCTGCTGTCGCAACCCTCAATCCAGTCTGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACCAGGGATGAACTCCGTATGCCTAAGTCAACCCATG
AAACGAGCATGCGGGCGCTCAACCGGCCGGAGAGGCCGATCGAAAAGGCATAATGCGCAAGCCGA
GGATCAGCCCAGTCCCTCTCTACGTGCTGTCGATCCCACTATCGATCCTGCTACCACAACCCTCG
ATCCAACTGAGGCTTAGACATGGAATGTACTCCATATGCCTCA
Found at i:25642015 original size:26 final size:26
Alignment explanation
Indices: 25641986--25642038 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25641976 CCAGTCTGAT
*
25641986 CTTAGACTGG-GAATGAACTCTGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
25642012 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
25642038 C
1 C
25642039 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:25643273 original size:26 final size:26
Alignment explanation
Indices: 25643244--25643294 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25643234 CCGATTTGAT
25643244 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
* *
25643270 CTTAGATTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
25643295 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:25644296 original size:159 final size:156
Alignment explanation
Indices: 25644001--25644497 Score: 473
Period size: 159 Copynumber: 3.1 Consensus size: 156
25643991 GCTCCATATG
* *
25644001 CTTAGAC-GTGGAATGAACTCCGTATGCCTAA-ACTAACCCACGAAACGAGCGTGCGGGTGATCA
1 CTTAGACTG-GGAATGAACTCCGTATGCCTAAGAC-AACCCACAAAACGAGCGTGCGGGTGCTCA
* * * * * *
25644064 ACCGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTTACGTGTTGTCGAT
64 GCCAGCCGGAGAGGCAGAATGCGCAAGCGA-GGATCGACCCGGTCCCCCC-TACGTGCTGCCGAT
25644129 CCTGCTGCCACAACCCTCGGTCCAGTCTGAT
127 CCTGCTGCCACAACCCTCGGTCC-GTCTGAT
* * * *
25644160 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGAGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCGGGTGCTCAGC
* * * * * * *
25644225 CAACCGAAGAGGCATAATGGGCGAGACGAGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGTCC
66 CAGCCGGAGAGGCAGAATGCGCAAG-CGAGGATCGACCCGGTCCCCC-CTACGTGCTGCCGATCC
* * * * **
25644290 TACTGCCATAACCCTTGGTCCGGCTGGGG
129 TGCTGCCACAACCCTCGGTCCGTCT-GAT
* * * *
25644319 CTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAAC-AGGCGTGCGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGACAACCCACAAAACGA-GCGTGCGGGTGCTCA
* * * * * * *
25644382 GCCAGTCGGAGAGTCAGAATGCG-ATAGTCGGGGATCGACCCGATCCCTCCTACTTGCTGCTGAT
64 GCCAGCCGGAGAGGCAGAATGCGCA-AG-CGAGGATCGACCCGGTCCCCCCTACGTGCTGCCGAT
* * * *
25644446 CCTGCTGCCGCAACGCTCGATCCGGTCCGAT
127 CCTGCTGCCACAACCCTCGGTCC-GTCTGAT
*
25644477 CTTAGATTGGGAATGAACTCC
1 CTTAGACTGGGAATGAACTCC
25644498 ATATCCTTAG
Statistics
Matches: 269, Mismatches: 59, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 50 0.19
159 212 0.79
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCCACAAAACGAGCGTGCGGGTGCTCAGC
CAGCCGGAGAGGCAGAATGCGCAAGCGAGGATCGACCCGGTCCCCCCTACGTGCTGCCGATCCTG
CTGCCACAACCCTCGGTCCGTCTGAT
Found at i:25645944 original size:159 final size:157
Alignment explanation
Indices: 25645563--25646022 Score: 435
Period size: 159 Copynumber: 2.9 Consensus size: 157
25645553 GCTGGTCCTA
* * *
25645563 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCAGTCCGGCTGGGGCTTAGAC-TGGAATG-ACTCCATATGCCTAAGCCAACC
* * * * * *
25645628 TACGAAACGAGTGTGCGGGCGCTCAGCTAGT-TGGAGAGGCAAAATGCACAAGCCGAGGATCGAC
64 CACGAAACGAGTGTGCGGGCGCTCAGCCA-TCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGC
** * * *
25645692 TTGG-TCCCCTCTGCATGCTGTCGATCCTG
128 CCGGTTCCCCTCTGCATGATGCCGATCCCG
** ** * *** * *
25645721 CTATCGTAACCCTCAGTCTGGTCT-TATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAAC
1 CTGCCACAACCCTCAGTCCGG-CTGGGGCTTAGACT-GGAATG-ACTCCATATGCCTAAGCCAAC
* * * * * *
25645785 CCATGAAACGAGTGTGCGGGCACTGAGCCATCCGAAGAGGCATAATGTGCAAGCCGGGGATCGGC
63 CCACGAAACGAGTGTGCGGGCGCTCAGCCATCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGC
** *
25645850 CCGGTTCCCCTCTGTGTGATGCCGGTCCCG
128 CCGGTTCCCCTCTGCATGATGCCGATCCCG
* *
25645880 CTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATACCTAAGCCAACC
1 CTGCCACAACCCTCAGTCCGGCTGGGGCTTAGAC-TGGAATGA-CTCCATATGCCTAAGCCAACC
* ** * *
25645945 CACGAAACGGGCATGCGGGCGCTCAGTCGA-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGC
64 CACGAAACGAGTGTGCGGGCGCTCAG-CCATCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGC
*
25646009 CCGG-TCCCCCCTGC
128 CCGGTTCCCCTCTGC
25646023 GTGCTATCGA
Statistics
Matches: 236, Mismatches: 58, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 2 0.01
158 109 0.46
159 122 0.52
160 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACTGGAATGACTCCATATGCCTAAGCCAACCCA
CGAAACGAGTGTGCGGGCGCTCAGCCATCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCG
GTTCCCCTCTGCATGATGCCGATCCCG
Found at i:25646492 original size:158 final size:158
Alignment explanation
Indices: 25646324--25646791 Score: 492
Period size: 159 Copynumber: 2.9 Consensus size: 158
25646314 TGCTATAACT
* * *
25646324 ACCCACGAAACGAGCGTGCAGGCGCTCAGCTGGTCGGAGAGGTAGAATACGCAAGCC-GAGGATC
1 ACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGTCGGAGAGGCAGAATACGCAAGCCAG-GGATC
* * * *
25646388 GACCCGATCCCCCTTACGTGCTGTTGATCCTGCTATCACAACCCTTGGTCCGATCCGATCTTAGA
65 GACCCGATCCCCCTTGCGTGCTGTTGATCCTGCTACCACAACCCTTGATCCGGTCCGATCTTAGA
* *
25646453 CTGGGAATGAACTCTGTATGCATAAGTCA
130 CTGGGAATGAACTCCGTATGCATAAGCCA
* * * * * *
25646482 ACCCACGAAACGAGCGTGCGGGTGCTGAGCTGGTCGAAGAGGCATAATGCGCAAGCTAGGGACCG
1 ACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGTCGGAGAGGCAGAATACGCAAGCCAGGGATCG
* * ** * ** **
25646547 ACCCGATCCCCCTCTGCGTGCTGTTGGTCCCGCTACCACAACCCTCAATTCGGTTGGGGCTTAGA
66 ACCCGATCCCCCT-TGCGTGCTGTTGATCCTGCTACCACAACCCTTGATCCGGTCCGATCTTAGA
* *
25646612 CAT-GGAATGAAACTCCCTATGCCTAAGCCA
130 C-TGGGAATG-AACTCCGTATGCATAAGCCA
* * * * * * * *
25646642 ACCCATGAAACGGGCGTGCGGGTGCTCAGCCGGCCAGAGAGGCAGCATACGTAAGCCAGGGATTG
1 ACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGTCGGAGAGGCAGAATACGCAAGCCAGGGATCG
* * * * * * *
25646707 GCCCGGTCCCCTTTGCGTGCTGTCGATCTTGCTGCCGCAA-CCTTCGATCCGGTCCGATCTTAGA
66 ACCCGATCCCCCTTGCGTGCTGTTGATCCTGCTACCACAACCCTT-GATCCGGTCCGATCTTAGA
*
25646771 GTGGGAATGAACTCCGTATGC
130 CTGGGAATGAACTCCGTATGC
25646792 TTAGACTGGG
Statistics
Matches: 246, Mismatches: 58, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
158 82 0.33
159 86 0.35
160 78 0.32
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
ACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGTCGGAGAGGCAGAATACGCAAGCCAGGGATCG
ACCCGATCCCCCTTGCGTGCTGTTGATCCTGCTACCACAACCCTTGATCCGGTCCGATCTTAGAC
TGGGAATGAACTCCGTATGCATAAGCCA
Found at i:25646748 original size:159 final size:159
Alignment explanation
Indices: 25646324--25646734 Score: 382
Period size: 160 Copynumber: 2.6 Consensus size: 159
25646314 TGCTATAACT
* * * * * * *
25646324 ACCCACGAAACGAGCGTGCAGGCGCTCAGCTGGTCGGAGAGGTAGAATACGCAAGCC-GAGGATC
1 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGAAGAGGCAGAATACGCAAGCCAG-GGACC
* * * * *** * * ** **
25646388 GACCCGATCCCCCT-TACGTGCTGTTGATCCTGCTATCACAACCCTTGGTCCGATCCGATCTTAG
65 GACCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTACCACAACCCTCAATTCGGTTGGGGCTTAG
** *
25646452 ACTGGGAATGAACTCTGTATGCATAAGTCA
130 ACTGGGAATGAACTCCCTATGCATAAGCCA
* * * * * *
25646482 ACCCACGAAACGAGCGTGCGGGTGCTGAGCTGGTCGAAGAGGCATAATGCGCAAGCTAGGGACCG
1 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGAAGAGGCAGAATACGCAAGCCAGGGACCG
* *
25646547 ACCCGATCCCCCTCTGCGTGCTGTTGGTCCCGCTACCACAACCCTCAATTCGGTTGGGGCTTAGA
66 ACCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTACCACAACCCTCAATTCGGTTGGGGCTTAGA
*
25646612 CAT-GGAATGAAACTCCCTATGCCTAAGCCA
131 C-TGGGAATG-AACTCCCTATGCATAAGCCA
* * * * **
25646642 ACCCATGAAACGGGCGTGCGGGTGCTCAGCCGGCC-AGAGAGGCAGCATACGTAAGCCAGGGATT
1 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGA-AGAGGCAGAATACGCAAGCCAGGGACC
* * *
25646706 GGCCCGGT-CCCCTTTGCGTGCTGTCGATC
65 GACCCGATCCCCCTCTGCGTGCTGTCGATC
25646735 TTGCTGCCGC
Statistics
Matches: 205, Mismatches: 43, Indels: 9
0.80 0.17 0.04
Matches are distributed among these distances:
158 67 0.33
159 65 0.32
160 73 0.36
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGAAGAGGCAGAATACGCAAGCCAGGGACCG
ACCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTACCACAACCCTCAATTCGGTTGGGGCTTAGA
CTGGGAATGAACTCCCTATGCATAAGCCA
Found at i:25646794 original size:26 final size:26
Alignment explanation
Indices: 25646765--25646817 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25646755 CCGGTCCGAT
*
25646765 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25646791 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25646817 C
1 C
25646818 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25647164 original size:26 final size:26
Alignment explanation
Indices: 25647135--25647188 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
25647125 GGTCTGATCT
* *
25647135 TAGACTGGGAATGAACTCTGTATACC
1 TAGAATGGGAATGAACTCCGTATACC
* *
25647161 TAGAATGGGGATGAACTCCGTATGCC
1 TAGAATGGGAATGAACTCCGTATACC
25647187 TA
1 TA
25647189 AGTCAGCCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGAATGGGAATGAACTCCGTATACC
Found at i:25647187 original size:184 final size:186
Alignment explanation
Indices: 25646991--25647434 Score: 570
Period size: 185 Copynumber: 2.4 Consensus size: 186
25646981 CATGGATTGT
* * * * *
25646991 ACTCCGTATGCCTAAGACAACCCACGAAGCAAGCGTGCAGACACTCAGCCGACCAGAGAGGCAGA
1 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGAGGCAGA
* * * *
25647056 ATGCGTAAGCT-AACGATCTGTCTGATCCCC-CCTGCGTGCTACCGATCCTGCTGCCATAACCCT
66 ATGCGTAAGCTCAACGATCAGCCCGATCCCCACCTGCGTGCTACCGATCCTGCTGCCACAACCCT
* ** *
25647119 CAATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATACCTAGAATGGGGATGA
131 CAATCCGGTCCAATCTTAGACTGGGAATGAACTCTATATACCTAGAATGGGGATGA
* * * * * *
25647175 ACTCCGTATGCCTAAGTCAGCCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCATA
1 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGAGGCAGA
* * * * ** * *
25647240 ATGCGTAAG-TCGAGGATCAGCCCGGTCCCCATCTGCGTGCTGTCGATCCTGCTGGCGCAACCCT
66 ATGCGTAAGCTCAACGATCAGCCCGATCCCCACCTGCGTGCTACCGATCCTGCTGCCACAACCCT
* * *
25647304 CGATCCGGTCCAATCTTAGACTGGGAATGAACTCTATATGCCTAGACTGGGGATGA
131 CAATCCGGTCCAATCTTAGACTGGGAATGAACTCTATATACCTAGAATGGGGATGA
* *
25647360 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTTAGCCGACCAGAGAGGCAGG
1 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGAGGCAGA
*
25647425 ATGCGCAAGC
66 ATGCGTAAGC
25647435 CGGAGATCGA
Statistics
Matches: 218, Mismatches: 39, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
183 1 0.00
184 76 0.35
185 141 0.65
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (186 bp):
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGAGGCAGA
ATGCGTAAGCTCAACGATCAGCCCGATCCCCACCTGCGTGCTACCGATCCTGCTGCCACAACCCT
CAATCCGGTCCAATCTTAGACTGGGAATGAACTCTATATACCTAGAATGGGGATGA
Found at i:25647359 original size:26 final size:26
Alignment explanation
Indices: 25647320--25647373 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
25647310 GGTCCAATCT
*
25647320 TAGACTGGGAATGAACTCTATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
* *
25647346 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCATATGCC
25647372 TA
1 TA
25647374 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:25648578 original size:26 final size:26
Alignment explanation
Indices: 25648542--25648594 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25648532 CTGGTCCAAT
25648542 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25648568 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25648594 C
1 C
25648595 CTAGGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25650701 original size:26 final size:26
Alignment explanation
Indices: 25650672--25650724 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25650662 CCGATCCGAT
25650672 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25650698 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25650724 C
1 C
25650725 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25651066 original size:26 final size:26
Alignment explanation
Indices: 25651025--25651077 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25651015 TCGATCCGAT
*
25651025 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25651051 CTTAGACT-GGATATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
25651077 C
1 C
25651078 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25651085 original size:353 final size:354
Alignment explanation
Indices: 25650414--25651087 Score: 869
Period size: 352 Copynumber: 1.9 Consensus size: 354
25650404 GGGTTCAATC
* * *
25650414 GGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCAGTCCCTCTCTGCGTGCTGTCGATCCCGCTA
1 GGAGAGCCATAATGCACAAGTCGGGGATCAGCCCAGCCCCTCTCTGCGTGCTGTCGATCCCGCTA
* * * * * *
25650479 CCAGTTCGACTGCCACAACCCTTAGTTCGGCTATGGCTTAGACGTGGAATGTACTCTGTATGCCT
66 CCAGTCCGACTGCCACAACCCTGAGTTCGACTAGGGCTTAGACATGGAATGTACTCCGTATGCCT
* ** * *
25650544 AAGCCAACACACGAAACGAGCGCGCGGGTGCTCAGTCAATCGAAGAGGCAAAATGCGTAAGCCGG
131 AAGCCAACACACGAAACAAGCGCGCGGGCACTCAGCCAATCGAAGAGGCAAAATGCGCAAGCCGG
* * ***
25650609 GGATCAGCCCGGTCCCCCCTGCGTCTGTTGATCCTCTTGCCACAACCCTCGATCCGATCCGATCT
196 GGATCAGCACAGTCCCCCCTGCGTCTACCGATCCTCTTGCCACAACCCTCGATCCGATCCGATCT
*
25650674 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAT
261 TAGACTGGGAATGAACTCCATATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCAT
25650739 GGAACAAGCGTGCGGGCACTTAGCTGACT
326 GGAACAAGCGTGCGGGCACTTAGCTGACT
** * * *
25650768 GGAGAGCCATAAT-CACAAGTCGGGGATCAG-CTTGACCCCTC-CTGTGTGCTGTCGATTCTGCT
1 GGAGAGCCATAATGCACAAGTCGGGGATCAGCCCAG-CCCCTCTCTGCGTGCTGTCGATCCCGCT
* *
25650830 ACCGGTCCTG-CTGCCACAACCCTCGA-TTCGACTGGGGCTTAGACATGGAATGTACTCCGTATG
65 ACCAGTCC-GACTGCCACAACCCT-GAGTTCGACTAGGGCTTAGACATGGAATGTACTCCGTATG
* * * *
25650893 CCTAAGCCAA-ACCACGAAACAAGCGTGCGGGCACTCAGCCAA-CTGGAGAGGTAGAATGCGCAA
128 CCTAAGCCAACA-CACGAAACAAGCGCGCGGGCACTCAGCCAATC-GAAGAGGCAAAATGCGCAA
** * ** *
25650956 GCCGGGGATTGGCACAGTCCCCCCTGCGTGCTACCGATCCTGC-TGTCGTAACCCTCGATTCGAT
191 GCCGGGGATCAGCACAGTCCCCCCTGCGT-CTACCGATCCT-CTTGCCACAACCCTCGATCCGAT
** *
25651020 CCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGATATGAACTCCGTATGCCTAAGTC
254 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTC
25651085 AAC
319 AAC
25651088 GTACAAAATG
Statistics
Matches: 273, Mismatches: 40, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
351 2 0.01
352 146 0.53
353 112 0.41
354 13 0.05
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (354 bp):
GGAGAGCCATAATGCACAAGTCGGGGATCAGCCCAGCCCCTCTCTGCGTGCTGTCGATCCCGCTA
CCAGTCCGACTGCCACAACCCTGAGTTCGACTAGGGCTTAGACATGGAATGTACTCCGTATGCCT
AAGCCAACACACGAAACAAGCGCGCGGGCACTCAGCCAATCGAAGAGGCAAAATGCGCAAGCCGG
GGATCAGCACAGTCCCCCCTGCGTCTACCGATCCTCTTGCCACAACCCTCGATCCGATCCGATCT
TAGACTGGGAATGAACTCCATATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCAT
GGAACAAGCGTGCGGGCACTTAGCTGACT
Found at i:25651532 original size:159 final size:159
Alignment explanation
Indices: 25651238--25651602 Score: 371
Period size: 159 Copynumber: 2.3 Consensus size: 159
25651228 GCTCCGTATG
* *
25651238 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGC
* * * ** *
25651303 CGGTCGGAGAGGCAGAATGAGTAAGCCAGGGATCGACCTGGTCCCCCACTGTGTGCTGTCGATCT
66 CGATCGAAGAGGCAGAATGAGTAAGCCAGGGATCGACCTGATCCCCCACTGCATGCTCTCGATCT
*
25651368 TGCTGCCGTAACCCTTGATCCGATCCAAT
131 CGCTGCCGTAACCCTTGATCCGATCCAAT
* * * *
25651397 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACAGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAG
* * * *
25651461 CCGATCGAAGAGGCATAATGCGTAAGCC-GAGGATCG-GCTCGATCCCCCTCTGCATGCTACT-G
65 CCGATCGAAGAGGCAGAATGAGTAAGCCAG-GGATCGACCT-GATCCCCCACTGCATGCT-CTCG
* ** * * * ****
25651523 GTCTCGCTGCCACAACCCTCGGTCC-AGCTGGGG
127 ATCTCGCTGCCGTAACCCTTGATCCGATC-CAAT
* * * *
25651556 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACG
1 CTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACG
25651603 GGCATGCGGG
Statistics
Matches: 168, Mismatches: 32, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
158 6 0.04
159 160 0.95
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGC
CGATCGAAGAGGCAGAATGAGTAAGCCAGGGATCGACCTGATCCCCCACTGCATGCTCTCGATCT
CGCTGCCGTAACCCTTGATCCGATCCAAT
Found at i:25651704 original size:26 final size:26
Alignment explanation
Indices: 25651675--25651727 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25651665 TTGATCCGAT
*
25651675 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCAGTATG
* *
25651701 CTTAGACTGGGGATGAACTCAGTATG
1 CTTAGACTGAGAATGAACTCAGTATG
25651727 C
1 C
25651728 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCAGTATG
Found at i:25652129 original size:329 final size:327
Alignment explanation
Indices: 25651701--25652376 Score: 906
Period size: 329 Copynumber: 2.1 Consensus size: 327
25651691 ACTCCGTATG
* *
25651701 CTTAGACTGGGGATGAACTCAGTATGCCTAAGTCAACCCATGAAATGAGTGTGAAGACGCTCAAC
1 CTTAGACTGGGAATGAACTCAGTATGCCTAAATCAACCCATGAAATGAGTGTGAAGACGCTCAAC
** * * * * *
25651766 CAGCCGGAGAGGCATAATTCACAAGCCGGGGATCAGCTCGGTCCCCCTCTGCGTGCTACCGATCC
66 CAGCCAAAGAGGCATAATGCACAAGCCAGGGATCAGCCCGATCCCCATCTGCGTGCTACCGATCC
* * * *
25651831 CACTACCGGTCTTGCTGCCACAACCTTCGGTCCGGTTGGGGCTTAGACATGGAATGTACTCCGTA
131 CACTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGTACTCCGTA
* * * * *
25651896 TGCCCAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAGTCGGTCGGAGAGACAGAATGCGTAA
196 TGCCCAAGCCAACCCACAAAACAAGCGCACGGGCACTCAGTCGGTCGGAGAGACAAAATGCGCAA
* * *
25651961 GTCGAGGATCGACCCGATCCCTCTTGCATGCTGTCGATCCTGCTACCGTAACCCTCGATCC-GAT
261 GTCGAGGATCGACCCGATCCCTCCTGCAT--TGTCGATCCTGCTACCGCAACCCTCAATCCAG-T
**
25652025 CTGAT
323 CCAAT
** * ** *
25652030 CTTAGACTGGGAATGAACTTTGTATGCCTAAATCAACCCATGAAATGAGTGT-ACGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCAGTATGCCTAAATCAACCCATGAAATGAGTGTGA-AGACGCTCAA
* * * **
25652094 CCAGCCAAAGAGGCATAATGCGCAAGCTAGGGATCAGCCCGATCCCCATCTGTGTGCTGTCGATC
65 CCAGCCAAAGAGGCATAATGCACAAGCCAGGGATCAGCCCGATCCCCATCTGCGTGCTACCGATC
*
25652159 CCACTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACGTGGAATGTACTCCGT
130 CCACTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGTACTCCGT
* * *
25652224 ATGCCTAAGCCAACCCACAAAACAAGCGCGCGGGCACTCAGTCGGTCGGAGAGGCAAAATGCGCA
195 ATGCCCAAGCCAACCCACAAAACAAGCGCACGGGCACTCAGTCGGTCGGAGAGACAAAATGCGCA
* * * * *
25652289 AGTCGAGGATCGGCTCGGTCCCTCCTGCATTGTCGATCTTGCTGCCGCAACCCTCAATCCAGTCC
260 AGTCGAGGATCGACCCGATCCCTCCTGCATTGTCGATCCTGCTACCGCAACCCTCAATCCAGTCC
25652354 AAT
325 AAT
*
25652357 CTTAGATTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
25652377 CATATGCTTA
Statistics
Matches: 300, Mismatches: 45, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
327 48 0.16
328 2 0.01
329 250 0.83
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (327 bp):
CTTAGACTGGGAATGAACTCAGTATGCCTAAATCAACCCATGAAATGAGTGTGAAGACGCTCAAC
CAGCCAAAGAGGCATAATGCACAAGCCAGGGATCAGCCCGATCCCCATCTGCGTGCTACCGATCC
CACTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGTACTCCGTA
TGCCCAAGCCAACCCACAAAACAAGCGCACGGGCACTCAGTCGGTCGGAGAGACAAAATGCGCAA
GTCGAGGATCGACCCGATCCCTCCTGCATTGTCGATCCTGCTACCGCAACCCTCAATCCAGTCCA
AT
Found at i:25653782 original size:159 final size:157
Alignment explanation
Indices: 25653427--25653844 Score: 428
Period size: 159 Copynumber: 2.6 Consensus size: 157
25653417 AGCTCCATAT
* ** * *
25653427 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCTTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-AGCGTGTGAGCGCTCAG
* * * ** *
25653492 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCT
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACACGGTCCCCCCTGCGTGCTACCGATCC
* *
25653557 TGCTACCACAACCCTCAGTCCAGTCTGA
130 CGCTACCACAACCCTCAGTCCAGGCTGA
* * * *
25653585 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGTGAGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-AGCGTGTGAGCGCTCA
* * * *
25653649 -CCTGGCCGAAGAGGCATAATGCGCAAGCTGGGGATCGACACGGTCCCTCTCTGCGTGCTACCGG
64 GCC-GGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACACGGTCCC-CCCTGCGTGCTACCGA
* *
25653713 TCCCGCTACCACAACCCTCGGTCC-GGCTGGG
127 TCCCGCTACCACAACCCTCAGTCCAGGCT-GA
* * * * * *
25653744 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGTGGGCCCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACA-GCGTGTGAGCGCTCAG
* * * * * * *
25653809 CCGACCGGAGAGGTAAAAGGCACAAGCCGGAGATCG
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCG
25653845 GCTCGATCCC
Statistics
Matches: 212, Mismatches: 41, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
157 3 0.01
158 95 0.45
159 111 0.52
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGCGTGTGAGCGCTCAGC
CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACACGGTCCCCCCTGCGTGCTACCGATCCC
GCTACCACAACCCTCAGTCCAGGCTGA
Found at i:25653939 original size:26 final size:26
Alignment explanation
Indices: 25653903--25653955 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25653893 CTGATTTGAT
25653903 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
* * *
25653929 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
25653955 C
1 C
25653956 GTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:25654996 original size:160 final size:160
Alignment explanation
Indices: 25654589--25655018 Score: 456
Period size: 160 Copynumber: 2.7 Consensus size: 160
25654579 CCGTATGCTT
25654589 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGC-GATCAGCCG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCAG-TCAGCCG
* * * * **
25654653 GCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC-AGTCCCCCC-CTGTGTGCTGTCGATCC
65 ACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGA-TCCCCCCTCTGCATGCTGTCGATCC
* * * *
25654716 AACTGCCACAACCCTCGATCCGATCTGATCTT
129 AACTACCACAACCCTCGATCCGAGCTGAGCTG
* * * * * * *
25654748 AGAC-TGGGAATGAACTCTGTATGCATAAGTCAAACCATGAAACGAGCGTGCGGACACTGAGCCG
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCAGTCAGCCG
* * * *
25654812 ACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTCTGCATGCTGTCGGTCCT
65 ACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTCTGCATGCTGTCGATCCA
* * *
25654877 GCTACCACAACCCTCGGTCCG-GCTGGGGCTG
130 ACTACCACAACCCTCGATCCGAGCT-GAGCTG
* * * * * * * *
25654908 AGACATGAAATGAGCTCCCTATGCCTAAGCCAACCCACGAATCGGGCGTACGGGCAGTCAGTCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCAGTCAGCCGA
* * * * *
25654973 CCGGAGAGACAGAATGAGCAAGCCAAGGATCGGCCCGGTCCTCCCT
66 CCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCT
25655019 ACGTGCTGTC
Statistics
Matches: 219, Mismatches: 46, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
158 1 0.00
159 94 0.43
160 123 0.56
161 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.28, T:0.16
Consensus pattern (160 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCAGTCAGCCGA
CCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTCTGCATGCTGTCGATCCAA
CTACCACAACCCTCGATCCGAGCTGAGCTG
Found at i:25655092 original size:26 final size:26
Alignment explanation
Indices: 25655063--25655115 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25655053 TCGATCTGAT
* *
25655063 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATAAACTCCGTATG
* *
25655089 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACAGGGAATAAACTCCGTATG
25655115 C
1 C
25655116 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATAAACTCCGTATG
Found at i:25655481 original size:26 final size:26
Alignment explanation
Indices: 25655429--25655481 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25655419 CCGGTCCGAT
* *
25655429 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
25655455 CTTAGACTTGGG-ATGAACTCCGCATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
25655481 C
1 C
25655482 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:25655827 original size:26 final size:26
Alignment explanation
Indices: 25655791--25655849 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
25655781 CTCGATCTGA
25655791 TCCG-ATG-TTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
*
25655815 TCCGTATGCTTAGACTGGGGATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
25655841 TCCGTATGC
1 TCCGTATGC
25655850 CTAAGTCAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 25 0.78
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:25655866 original size:368 final size:367
Alignment explanation
Indices: 25654872--25656258 Score: 1467
Period size: 368 Copynumber: 3.8 Consensus size: 367
25654862 CATGCTGTCG
* * * * * **
25654872 GTCCTGCTACCACAACCCTCGGTCCGGCTGGGGCTGAGACATGAAATG-AGCTCCCTATGCCTAA
1 GTCCTGCTACCACAACCCTCGCTCCGACTGGGGCTTAGACGTGGAATGTA-CTCTGTATGCCTAA
* * * * * * * ***
25654936 GCCAACCCACGAATCGGGCGTACGGGCAG-TCAGTCGACCGGAGAGACAGAATGA-GCAAGCCAA
65 GCCAACCCATGAAACGAGCGTACGGGC-GCTCAGCCGGCTGGAGAGGCAGAAT-ACGCAAGCTGG
* * * * * *
25654999 GGATCGGCCCGGT-CCTCCCTACGTGCTGTCAATGCTGCT-GCGCCAACCCTCGAT-TCGATCTG
128 GGATC-GACCTGTCCCT-CCTACGTGCTGTCGATCCTGCTATCG-CAACCCTCGATCT-GATCCG
* * *
25655061 ATCTTAGACAGGGAATGAACTCTGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAAC
189 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* ** * * ** * *
25655126 CCATGAAACGAGCGTACAAGCGCTCAACTGGTTGGAGAGGCCGGCCAGAGAGGCATAATGCACAA
254 CCATGAAACGAGCGTGCGGGCGCTCAGCCGACTGAAGAGGTCGGCCAGAGAGGCATAATGCACAA
* * * * *
25655191 GCCAGGGCTCAGCCCGATCCACCTCTGCGTGCTACCGATCCCATTGTCA
319 GCTAGGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATCCCACTGCCA
* * * *
25655240 GTCCTGCTGCCACAACCCTTGGTTCGACTGGGGCTTAGACGTGGAATGTAC-CTGTATGCCTAAG
1 GTCCTGCTACCACAACCCTCGCTCCGACTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAG
* * * * * *
25655304 CCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCGAAGAGGCAGAATACACAAGCCGGGGA
66 CCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCTGGAGAGGCAGAATACGCAAGCTGGGGA
** * *** * * * * *
25655369 TCGGTCTGGTCCCT-CTATGTAAAGTCGATGCTACTATCGCATCCCTCGATCCGGTCCGATCTTA
131 TCGACCT-GTCCCTCCTACGTGCTGTCGATCCTGCTATCGCAACCCTCGATCTGATCCGATCTTA
* * *
25655433 GACTGGGAATGAACTCTGTATGCTTAGACTTGGGATGAACTCCGCATGCCTAAGTCAACCCATGA
195 GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGA
* * * *
25655498 AACAAGCATGCGGGTGCTCAGCCGACTGAAGAGGTCGGCCAGAGAGGCATAATGCGCAAGCTAGG
260 AACGAGCGTGCGGGCGCTCAGCCGACTGAAGAGGTCGGCCAGAGAGGCATAATGCACAAGCTAGG
* * * * * *
25655563 GATCAGCCTGGTCCCCCTCTGCGTGCTGCCGATCTCGCTACCA
325 GATCAGCCCGATCCCCCTCTGCGTGCTACCGATCCCACTGCCA
* *
25655606 GTCCAGCTACCACAACGCTCGCTCCGACTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAG
1 GTCCTGCTACCACAACCCTCGCTCCGACTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAG
* * * *
25655671 CCAACCCATGAAACGAGCGTTCGGGCGGTCAGCCTGCTGGAGAGGCAGAATACGTAAGCTGGGGA
66 CCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCTGGAGAGGCAGAATACGCAAGCTGGGGA
* * * * *
25655736 TCAACCTGACCCATCCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGATCTGATCCGATGTTA
131 TCGACCTGTCCC-TCCTACGTGCTGTCGATCCTGCTATCGCAACCCTCGATCTGATCCGATCTTA
25655801 GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGA
195 GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGA
* * * * ** * * *
25655866 AACGAGCGTGCGGGAGCTCAGCTGGC-CAGAGAGGTCGGATAGAAAGGCATAATGCACAA-TTCG
260 AACGAGCGTGCGGGCGCTCAGCCGACTGA-AGAGGTCGGCCAGAGAGGCATAATGCACAAGCT-A
* *
25655929 GGGATCAGCCCGAT-CCCTTACTGCATGCTACCGATCCCACTGCC-
323 GGGATCAGCCCGATCCCCCT-CTGCGTGCTACCGATCCCACTGCCA
* **
25655973 GCTCCTGCTACCACAACCCTCAGTTCCG-CTGGGGCTTAGACGTGGAATGTACTCCATATGCCTA
1 G-TCCTGCTACCACAACCCTC-GCTCCGACTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTA
* * * **
25656037 AGCCAACCCACGAAACGAGCGTACGGGCACTCAGCAGGCTGGAGAGGCAGAATGTGCAAG-TCGG
64 AGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCTGGAGAGGCAGAATACGCAAGCT-GG
* * * * * *
25656101 GGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTTGCAGCCCTC-AGTCT-AGTCCGA
128 GGATCGAC-CTGTCCCTCCTACGTGCTGTCGATCCTGCTATCGCAACCCTCGA-TCTGA-TCCGA
* *
25656164 T-TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAGATGAACTTCGTATGCCTAAGTCAACC
190 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
* *
25656228 CACGAAACGAGCGTGCGGGCACTCAGCCGAC
255 CATGAAACGAGCGTGCGGGCGCTCAGCCGAC
25656259 CAGAGAGGCA
Statistics
Matches: 854, Mismatches: 146, Indels: 39
0.82 0.14 0.04
Matches are distributed among these distances:
366 233 0.27
367 239 0.28
368 371 0.43
369 11 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (367 bp):
GTCCTGCTACCACAACCCTCGCTCCGACTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAG
CCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCTGGAGAGGCAGAATACGCAAGCTGGGGA
TCGACCTGTCCCTCCTACGTGCTGTCGATCCTGCTATCGCAACCCTCGATCTGATCCGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
ACGAGCGTGCGGGCGCTCAGCCGACTGAAGAGGTCGGCCAGAGAGGCATAATGCACAAGCTAGGG
ATCAGCCCGATCCCCCTCTGCGTGCTACCGATCCCACTGCCA
Found at i:25656194 original size:26 final size:26
Alignment explanation
Indices: 25656165--25656216 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25656155 CTAGTCCGAT
25656165 TTAGACTGG-GAATGAACTCCGTATGC
1 TTAGACTGGAG-ATGAACTCCGTATGC
*
25656191 TTAGACTGGAGATGAACTTCGTATGC
1 TTAGACTGGAGATGAACTCCGTATGC
25656217 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGAGATGAACTCCGTATGC
Found at i:25657440 original size:26 final size:26
Alignment explanation
Indices: 25657397--25657448 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25657387 TCAGGCAATA
*
25657397 TTAGACTGGGAAAGAACTTTGTATGC
1 TTAGACTGGGAAAGAACTCTGTATGC
*
25657423 TTAGACTGGGGACA-AACTCTGTATGC
1 TTAGACT-GGGAAAGAACTCTGTATGC
25657449 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAAAGAACTCTGTATGC
Found at i:25658146 original size:25 final size:26
Alignment explanation
Indices: 25658118--25658169 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25658108 GGCTCAAAAT
*
25658118 CTTAGAC-TGGAATGAGCTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
25658143 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25658169 C
1 C
25658170 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25660427 original size:26 final size:26
Alignment explanation
Indices: 25660386--25660438 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25660376 CCAGTCCAAT
25660386 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCTATATG
* * *
25660412 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTATATG
25660438 C
1 C
25660439 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTATATG
Found at i:25660547 original size:368 final size:368
Alignment explanation
Indices: 25660016--25660696 Score: 888
Period size: 368 Copynumber: 1.9 Consensus size: 368
25660006 AGTCGGTCTG
* *
25660016 ATCTTAGACTGAGAATGAACTCCATATGCTTAGATTGGGGATGAAATCCGTATGCTTAAGTCAAC
1 ATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGGATGAAATCCGTATGCCTAAGTCAAC
* * * *
25660081 CCATAAAACGAGCGTGCGGGCGCTCAACCGACTAGAGAGGCTGGCTGAAGAGGCATAATACACAA
66 CCACAAAACGAGCGTGCGAGCGCTCAACCGACCAGAGAGGCCGGCTGAAGAGGCATAATACACAA
* * * * ** **
25660146 ATCGGGGATCAGCCCGATCCCTCTTTGCATGCTGTCAATCTCGTTGTTGGTCCAGCTACCACAAC
131 ATCGGGGATCAACCCGATCCCCCTTTACATGCTGTCAATCCCACTGCCGGTCCAGCTACCACAAC
* * * *
25660211 CCTCGATCTGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCCACTA-ACGAAATG
196 CCTCGATCTGACTGAGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC-ACACAAAACG
25660275 AGCGTACGGGCGCTCAGCCGACC-GAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCC
260 AGCGTACGGGCGCTCAGCCGACCAG-AGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCC
25660339 CTTGCGTGTTGCTGATTCCACTACCGCAACCCTTGATCCAGTCCA
324 CTTGCGTGTTGCTGATTCCACTACCGCAACCCTTGATCCAGTCCA
* * *
25660384 ATCTTAGACT-AGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAA
1 ATCTTAGACTGA-GAATGAACTCCATATGCTTAGACTGGGGATGAAATCCGTATGCCTAAGTCAA
* ** * * * *
25660448 CCTACAAAGTGAGCGTGCGAGCGCTCAACTGACCGGAGAGGCCGG-TCGGAGAGGCATAATGCAC
65 CCCACAAAACGAGCGTGCGAGCGCTCAACCGACCAGAGAGGCCGGCT-GAAGAGGCATAATACAC
* * * *
25660512 -AAGCTGGGGATCAACCC-AGTCCCCCTTTACATGCTGTCGATCCCACTGCCGGTCCTGCTGCCA
129 AAATC-GGGGATCAACCCGA-TCCCCCTTTACATGCTGTCAATCCCACTGCCGGTCCAGCTACCA
* * *
25660575 CAACCCTTGGTCTGACTGAGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACACATAAA
192 CAACCCTCGATCTGACTGAGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACACACAAA
** * * * * *
25660640 ACGAGCGTGTGGGCGTTTAGCCGACCAGAGAGGTAGGATGCGCAAGCCGGGGATCGA
257 ACGAGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGA
25660697 ACGGGTGGTA
Statistics
Matches: 265, Mismatches: 42, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
367 7 0.03
368 257 0.97
369 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (368 bp):
ATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGGATGAAATCCGTATGCCTAAGTCAAC
CCACAAAACGAGCGTGCGAGCGCTCAACCGACCAGAGAGGCCGGCTGAAGAGGCATAATACACAA
ATCGGGGATCAACCCGATCCCCCTTTACATGCTGTCAATCCCACTGCCGGTCCAGCTACCACAAC
CCTCGATCTGACTGAGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACACACAAAACGA
GCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCT
TGCGTGTTGCTGATTCCACTACCGCAACCCTTGATCCAGTCCA
Found at i:25661738 original size:26 final size:26
Alignment explanation
Indices: 25661709--25661760 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
25661699 TCCGATCTTC
25661709 GACTGGGAATGAACTCCGTATGCTTA
1 GACTGGGAATGAACTCCGTATGCTTA
*
25661735 GACTGGGGATGAACTCCGTATGCTTA
1 GACTGGGAATGAACTCCGTATGCTTA
25661761 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
GACTGGGAATGAACTCCGTATGCTTA
Found at i:25662076 original size:26 final size:26
Alignment explanation
Indices: 25662040--25662092 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25662030 TCGGTCCGAT
25662040 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
25662066 CTTAGACTAGGGATGAATTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
25662092 C
1 C
25662093 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:25663582 original size:26 final size:26
Alignment explanation
Indices: 25663553--25663603 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
25663543 GATCCGATCA
25663553 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
25663579 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
25663604 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:25663905 original size:341 final size:337
Alignment explanation
Indices: 25663396--25664040 Score: 830
Period size: 341 Copynumber: 1.9 Consensus size: 337
25663386 GGTCTGACTG
* * * **
25663396 GGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACCCATGAACGTGTGGGTGCTCAGTCG
1 GGGCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCCATGAACGTGCGGGCGCTCAACCG
* * * *
25663461 GTCGGAGAGACAGAATATGCAAGTCGGGGATCGGCCCAGTCCCCCTGCATACTACCGATCCTGCT
66 GCCGGAGAGACAGAATACGCAAGTCGGGGATCGACCCAGTCCCCCTGCATACTACCGATCCAGCT
** * *
25663526 ACCGTAACCCTCGATTCGATCCGATCATAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGAT
131 ACCACAACCCTCGATCCGATCCGATCATAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGAT
* * * * *
25663591 GAACTCCGTATGCCTAAGTTAACCCACAAAATGAGCGTGCGGGCTCTGAGCCGAC-AGAGAGGCA
196 GAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGCCGACTAGAGAGACA
* * *
25663655 TAATACGTAAGTCGGGGATCAGTCC-GGTCCCCCTCTGCGTGCTGCCGATCCCACTGGCACAACC
261 TAATACGTAAATCAGGGATCAG-CCTAGTCCCCCTCTGCGTGCTGCCGATCCCACTGGCACAACC
25663719 CTCGGTTTGGCTA
325 CTCGGTTTGGCTA
*
25663732 GGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCT
1 GGGCTTAGACATGGAATGTA-CTCCATATGCCTAAGCCAACCCATG-AA----CGTGCGGGCGCT
* * * * * **
25663796 CAACCGGCCGGAGAGGCAGAATGCGCAAGTC-GGGATCGACCTAGTCCCCCCTGCGTGCTGTCGA
60 CAACCGGCCGGAGAGACAGAATACGCAAGTCGGGGATCGACCCAGT-CCCCCTGCATACTACCGA
* * * * *
25663860 TCCAGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGAC
124 TCCAGCTACCACAACCCTCGATCCGATCCGATCATAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
25663925 TAGGGATGAACTCCATATGCCTAAGTCAAGCCACGAAATTAGCGTGCGGGCACTCAGTCGACTGG
189 TAGGGATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGCCGACTAG
*
25663990 AGAGACATAATCCGTAAATCAGGGATCAGCCTAGTCCCCCTCTGCGTGCTG
254 AGAGACATAATACGTAAATCAGGGATCAGCCTAGTCCCCCTCTGCGTGCTG
25664041 TCAATTCCGT
Statistics
Matches: 260, Mismatches: 40, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
335 1 0.00
336 41 0.16
337 2 0.01
340 12 0.05
341 160 0.62
342 44 0.17
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (337 bp):
GGGCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCCATGAACGTGCGGGCGCTCAACCG
GCCGGAGAGACAGAATACGCAAGTCGGGGATCGACCCAGTCCCCCTGCATACTACCGATCCAGCT
ACCACAACCCTCGATCCGATCCGATCATAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGAT
GAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGCCGACTAGAGAGACA
TAATACGTAAATCAGGGATCAGCCTAGTCCCCCTCTGCGTGCTGCCGATCCCACTGGCACAACCC
TCGGTTTGGCTA
Found at i:25664553 original size:26 final size:26
Alignment explanation
Indices: 25664524--25664576 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25664514 CCGATCTGAT
25664524 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* * *
25664550 CTTAGACTGGGGATGAACTCGGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
25664576 C
1 C
25664577 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:25665287 original size:26 final size:26
Alignment explanation
Indices: 25665258--25665310 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25665248 GGCTCAAAAT
*
25665258 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25665284 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25665310 C
1 C
25665311 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25665627 original size:22 final size:22
Alignment explanation
Indices: 25665592--25665634 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
25665582 CCCTCGGGTC
25665592 TGGCTAGGGGTTGGACATGGAA
1 TGGCTAGGGGTTGGACATGGAA
25665614 TGGCT-GGGGCTTGGACATGGA
1 TGGCTAGGGG-TTGGACATGGA
25665635 CTGGACCGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.19, C:0.12, G:0.47, T:0.23
Consensus pattern (22 bp):
TGGCTAGGGGTTGGACATGGAA
Found at i:25666333 original size:184 final size:182
Alignment explanation
Indices: 25666109--25666539 Score: 453
Period size: 184 Copynumber: 2.3 Consensus size: 182
25666099 AACTTCGTAT
* * *
25666109 GCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACT-GGAATGTACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
25666174 CCGATC-GGAAAGGCCGGTC-AGAGAGGCATAA--TACGAAAGCTGGGGATCAGC-CTGGTTACC
65 CCG-GCAGGAAAGGCCGGTCGA-AGAGGCATAATGTAC--AAGCCGGGGATCAGCTC-GATCACC
* * *
25666234 CTCTGCATGCTGCCGATCCTGCTACCGGTCCTGCTACCACAACCCT-TGGTTCAG-CTAGG
125 CTCTGCAT-CTACCGATCCCGCTACCGGTCCTACTACCACAACCCTCT-G-TCAGACTAGG
* *
25666293 GCTTAGACATGGAATGTACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGAC-TGGAATGTACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
25666358 CTGGCAGGAGAGGCTGGTCGAAGAGGCATAATGTACAAGCCGGGGATCAGCTCGATCCCCCTCTG
65 CCGGCAGGAAAGGCCGGTCGAAGAGGCATAATGTACAAGCCGGGGATCAGCTCGATCACCCTCTG
* * * * * * * *
25666423 CGTCTATCGATCCCGCTACTGGTCTTACTGCCATAACCCTCTGTCCGACTGGG
130 CATCTACCGATCCCGCTACCGGTCCTACTACCACAACCCTCTGTCAGACTAGG
* * * * *
25666476 GCCTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACGCATGAAACGAGCGTACGGGCGCTCA
1 GCTTAGAC-TGGAATGTACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
25666540 ACAGGTCGGA
Statistics
Matches: 207, Mismatches: 32, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
182 3 0.01
183 91 0.44
184 107 0.52
185 3 0.01
186 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (182 bp):
GCTTAGACTGGAATGTACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCAGGAAAGGCCGGTCGAAGAGGCATAATGTACAAGCCGGGGATCAGCTCGATCACCCTCTGC
ATCTACCGATCCCGCTACCGGTCCTACTACCACAACCCTCTGTCAGACTAGG
Found at i:25666553 original size:183 final size:183
Alignment explanation
Indices: 25666130--25666554 Score: 459
Period size: 183 Copynumber: 2.3 Consensus size: 183
25666120 GGATGAACTT
* * * *
25666130 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAAAGGCCGGTCAG
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGGTCGGAGAGGCCGGTCAG
* * * * *
25666195 AGAGGCATAATACGAAAGCTGGGGATCAGCCTGGTTACCCTCTGCATGCTGCCGATCCTGCTACC
66 AGAGGCATAATAC-AAAGCCGGGGATCAGCCTGATCACCCTCTGCATGCTACCGATCCCGCTACC
* * * *
25666260 GGTCCTGCTACCACAACCCTTGGTTCAGCTAGGGCTTAGACATGGAATGTACTT
130 GGTCCTACTACCACAACCCTTGGTCCAGCTAGGGCCTAGACATGGAATGTACTC
* * * *
25666314 CGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCTGG-CAGGAGAGGCTGGTC-
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGGTC-GGAGAGGCCGGTCA
* * *
25666377 GAAGAGGCATAATGTAC-AAGCCGGGGATCAG-CTCGATCCCCCTCTGCGT-CTATCGATCCCGC
65 G-AGAGGCATAA--TACAAAGCCGGGGATCAGCCT-GATCACCCTCTGCATGCTACCGATCCCGC
* * * * * *
25666439 TACTGGTCTTACTGCCATAACCCTCT-GTCC-GACTGGGGCCTAGACGTGGAATGTACTC
126 TACCGGTCCTACTACCACAACCCT-TGGTCCAG-CTAGGGCCTAGACATGGAATGTACTC
* * * *
25666497 CGTATGCCTAAGCCAACGCATGAAACGAGCGTACGGGCGCTCAACAGGTCGGAGAGGC
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGGTCGGAGAGGC
25666555 AGAATGCGCA
Statistics
Matches: 201, Mismatches: 32, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
182 1 0.00
183 107 0.53
184 90 0.45
186 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (183 bp):
CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGGTCGGAGAGGCCGGTCAG
AGAGGCATAATACAAAGCCGGGGATCAGCCTGATCACCCTCTGCATGCTACCGATCCCGCTACCG
GTCCTACTACCACAACCCTTGGTCCAGCTAGGGCCTAGACATGGAATGTACTC
Found at i:25666687 original size:26 final size:26
Alignment explanation
Indices: 25666635--25666687 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25666625 CCGATGGGAT
*
25666635 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
25666661 CTTAGACTGGGGATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
25666687 C
1 C
25666688 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:25667386 original size:26 final size:26
Alignment explanation
Indices: 25667349--25667399 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25667339 GCTTAAAATA
*
25667349 TTAGACTAGGAATGAGCTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
25667375 TTAGAC-ATGGAATGAACTCCGTATG
1 TTAGACTA-GGAATGAACTCCGTATG
25667400 TCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:25667731 original size:159 final size:158
Alignment explanation
Indices: 25667373--25667875 Score: 426
Period size: 158 Copynumber: 3.2 Consensus size: 158
25667363 AGCTCCGTAT
* ** * *
25667373 GCTTAGACATGGAATGAACTCCGTATGTCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTCCGGGCGCTCAG
* * * * * **
25667438 TCGGTCACAGAGGCAGAATGCGCAAGCAGGGGATCGACCCGGTCCCCCTTGTATGTTGTCGATCC
66 CCGGCCACAGAGGCAGAATGCGCAAGCAGAGGATCGACCCGGTCCCCCTTGCATGCTCCCGATCC
*
25667503 TACTACCACAACCCTCGATCCGGTCTGA
131 TACTACCACAACCCTCGATCCAGTCTGA
* * * * * * *
25667531 TCATAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACAAGCGTCCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTCCGGGCGCTCA
* *
25667595 GCCGGCCGA-AGAGGCATAATGCGCAAGTC-GAGGATCGACTCGGTCCCCCTCTGCATGCTCCCG
65 GCCGGCC-ACAGAGGCAGAATGCGCAAG-CAGAGGATCGACCCGGTCCCCCT-TGCATGCTCCCG
* * * *
25667658 ATCCTACTACCATAACCCTTGGTCCAG-CTGGG
127 ATCCTACTACCACAACCCTCGATCCAGTCT-GA
* * * *
25667690 GCTTAGACATGGAATGAGA-TCCCTATGCCTAAGCCAACCCATGAAAC-GGCCGTGCAGGCGCTC
1 GCTTAGACATGGAATGA-ACTCCGTATGCCTAAGCCAACCCATGAAACAAG-CGTCCGGGCGCTC
* * ** * * * * * * * *
25667753 AACCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTACGTGCTGCCAAT
64 AGCCGGCCACAGAGGCAGAATGCGCAAGCAGAGGATCGACCCGGTCCCCCTTGCATGCTCCCGAT
** * * * *
25667818 CCTACTACTGCAACACTCAATTCGGTCTGA
129 CCTACTACCACAACCCTCGATCCAGTCTGA
* * *
25667848 TCTTAGA-TTGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
25667876 TTAGATTGGG
Statistics
Matches: 269, Mismatches: 63, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 142 0.53
159 122 0.45
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTCCGGGCGCTCAG
CCGGCCACAGAGGCAGAATGCGCAAGCAGAGGATCGACCCGGTCCCCCTTGCATGCTCCCGATCC
TACTACCACAACCCTCGATCCAGTCTGA
Found at i:25667878 original size:26 final size:26
Alignment explanation
Indices: 25667849--25667901 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25667839 TCGGTCTGAT
25667849 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCTGTATG
*
25667875 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCTGTATG
25667901 C
1 C
25667902 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCTGTATG
Found at i:25668250 original size:26 final size:26
Alignment explanation
Indices: 25668209--25668261 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25668199 TCAGTCCAAT
25668209 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25668235 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
25668261 C
1 C
25668262 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25668953 original size:26 final size:26
Alignment explanation
Indices: 25668914--25668967 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
25668904 TGGCTCAAAA
* *
25668914 GCTTAGACTTGGAATGAGCCCCGTAT
1 GCTTAGACTGGGAATGAACCCCGTAT
*
25668940 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACCCCGTAT
25668966 GC
1 GC
25668968 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACCCCGTAT
Found at i:25669306 original size:26 final size:25
Alignment explanation
Indices: 25669256--25669307 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
25669246 CCGATTCGCT
* *
25669256 CTTAGACTGGGAATGAACTCCTATG
1 CTTAGACTGGGAATAAAATCCTATG
*
25669281 CTTAGACTGGGGATAAAATCCGTATG
1 CTTAGACTGGGAATAAAATCC-TATG
25669307 C
1 C
25669308 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATAAAATCCTATG
Found at i:25669672 original size:25 final size:26
Alignment explanation
Indices: 25669624--25669675 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
25669614 CCGGTTCGAT
*
25669624 CTTAGACTGGGAATGAAATTCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
25669650 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
25669675 C
1 C
25669676 CTATTTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:25669805 original size:367 final size:363
Alignment explanation
Indices: 25669074--25670074 Score: 1062
Period size: 367 Copynumber: 2.7 Consensus size: 363
25669064 TATTCTTGCA
* * *
25669074 GCCACAACCCTTGGTCTGGTTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGA-CTCCGTATGCCTAAGCCAACCCA
* * * * **
25669139 TGAAACGGGCGTGCAGGCGCTCAACCGACCGGAGAGGCAGAATG-ACAAATTGGGGATCGGCTCG
65 TGAAACGAGTGTGC-GGCGCTCAACCGGCC-GAGAGGTAGAATGCACAAGCTGGGGATC-GCTCG
* * *
25669203 GTCCCCTCTCTG-TGCTGTCGATCCTGCTATCGCAACCCTCGATCCGATTCGCTCTTAGACTGGG
127 ATCCCC-C-CTGCTGCTGTCGATCCTGCTATCGCAACCCTTGATCCGATTCGATCTTAGACTGGG
* * * * * *
25669267 AATG-AACTCCTATGCTTAGACTGGGGATAAAATCCGTATGCCTAAGTCAACCCATGAAACAAGC
190 AATGAAATTCATATGCTTAGACT-GGGATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGC
** * * * * * * **
25669331 GCACGGACGCTCAGCCGAATGGAGAGGTCGGTCGGAGAGGCCATCATGCGTAAGCCGAGGATCAG
254 GTGCGGGCACTCAGCCGAATGAAGAGGCCGGCCGGAGAGGCCATAATGCACAAGCCGAGGATCAG
* **
25669396 CCCGATCCCCCTCTACGTGCTGTCGATCCCGCTACCGGTCCTACT
319 CCCGATCCCCATCTACGTGCTACCGATCCCGCTACCGGTCCTACT
* * * *
25669441 GCCACAACCCTCGGTCCGGCTGGGGCTTAGACGTCGAATGCACTTCGTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATG-ACTCCGTATGCCTAAGCCAACCCA
* * *
25669506 TGAAATGAGTGTGCGGATGCTCAGCCGGCCGATGAGGTAGAATGCACAAGCTGGGGATTCGCTCG
65 TGAAACGAGTGTGCGG-CGCTCAACCGGCCGA-GAGGTAGAATGCACAAGCTGGGGA-TCGCTCG
* * * * * *
25669571 ATCCCCCCAGCATACTATCGATCCTGCTGTCGTAACCCTTGATCCGGTTCGATCTTAGACTGGGA
127 ATCCCCCCTGC-TGCTGTCGATCCTGCTATCGCAACCCTTGATCCGATTCGATCTTAGACTGGGA
* * *
25669636 ATGAAATTCGTATGCTTAGACTGGGATGAACTCCGTATGCCTATTTCAACCCATGAAATGAGCGT
191 ATGAAATTCATATGCTTAGACTGGGATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGCGT
* * * *
25669701 GCGGGCACTCAGTCGGCA-GAAGAGGCCGGCCGGAGAGG-CATAATGCACAAGCTGGGGATCAGC
256 GCGGGCACTCAG-CCGAATGAAGAGGCCGGCCGGAGAGGCCATAATGCACAAGCCGAGGATCAGC
** * * * * ***
25669764 TTGGTTCTCATCTGCGTGCTACCGATCCCGCTGTTGGTCCTACT
320 CCGATCCCCATCTACGTGCTACCGATCCCGCTACCGGTCCTACT
* * *
25669808 GCCACAACCCTCGATTCGGTTAGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATG-ACTCCGTATGCCTAAGCCAACCCA
* * * * * *
25669873 TGAAACAAATGTGCGGGCGCTCAACTGGTCGAAGAGGTAGAATGCGCAAGCTGGGGATCGATCCG
65 TGAAACGAGTGTGC-GGCGCTCAACCGGCCG-AGAGGTAGAATGCACAAGCTGGGGATCGCT-CG
** * * * *
25669938 ATCCCCTTTGCGTGCTGCCGATCCTGCTATCGCAA-CCTTCGATCCGATCCGATCTTAGATTAGG
127 ATCCCCCCTGC-TGCTGTCGATCCTGCTATCGCAACCCTT-GATCCGATTCGATCTTAGACTGGG
* * *
25670002 AATGAACTCCATATGCTTAGACTGTGGATGAACTCCGTATGCCTAAGTT-AACCCACGAAACGAG
190 AATGAAATTCATATGCTTAGACTG-GGATGAACTCCGTATGCCTAA-TTCAACCCATGAAACGAG
25670066 CGTGCGGGC
253 CGTGCGGGC
25670075 GCTCTGCTGA
Statistics
Matches: 524, Mismatches: 95, Indels: 29
0.81 0.15 0.04
Matches are distributed among these distances:
366 14 0.03
367 310 0.59
368 177 0.34
369 23 0.04
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (363 bp):
GCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGACTCCGTATGCCTAAGCCAACCCAT
GAAACGAGTGTGCGGCGCTCAACCGGCCGAGAGGTAGAATGCACAAGCTGGGGATCGCTCGATCC
CCCCTGCTGCTGTCGATCCTGCTATCGCAACCCTTGATCCGATTCGATCTTAGACTGGGAATGAA
ATTCATATGCTTAGACTGGGATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGCGTGCGGG
CACTCAGCCGAATGAAGAGGCCGGCCGGAGAGGCCATAATGCACAAGCCGAGGATCAGCCCGATC
CCCATCTACGTGCTACCGATCCCGCTACCGGTCCTACT
Found at i:25671085 original size:26 final size:26
Alignment explanation
Indices: 25671056--25671108 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25671046 CCGGTCTGAT
25671056 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25671082 CTTAGAGTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25671108 C
1 C
25671109 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25671455 original size:26 final size:26
Alignment explanation
Indices: 25671419--25671471 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25671409 CCGATCTGAT
25671419 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25671445 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25671471 C
1 C
25671472 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25671694 original size:367 final size:366
Alignment explanation
Indices: 25670873--25672246 Score: 1437
Period size: 367 Copynumber: 3.8 Consensus size: 366
25670863 ATATCCCGCT
* * *
25670873 ACCACAACCCTC-GGTCTGGCTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACC
1 ACCACAACCCTCAGTTCTGGCTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAACC
* * * * * * * * *
25670936 CATGAAACGGGCATGCGGGCGCTTAGTCGGTCGGAGAGGTAGAATGTGAAAGTCAGGGCTCGGCT
65 CACGAAACGAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCT
* * * * * *
25671001 CGGTCCCCCCTGCGTTCTG-CTGATCCTGCTGTCGTAACCCTCAATCCGGTCTGATCTTAGACTG
130 CGATCCCCCCTGCATGCTGTC-GATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTG
* * *
25671065 GGAATGAACTCCGTATGCTTAGAGTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACTA
194 GGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
* * * * ** * *
25671130 GCGTACAGGCGTTCAACCGACCAGAGAGGCC-A--GAGAGGTATAACGCCCATGCCAGGGATCAG
259 GCGTACAGGCGCTCAGCCGACCGGAGAGGCCGATGGAGAGGTATAATGTGCAAGCCGGGGATCAG
* * *
25671192 TCCGATCCCCCTTTACATGCTACTGATCCTACTGCTAGTCCTGC
324 CCCGATCCCCCTCTACATGCTAC-GATCCCACTGCTAGTCCTGC
* * * ** * * *
25671236 TCCACAACCCTC-GGTCCGATTGTGGCTTAGACGTGGAATGTACTCCATATACCTAAGCCAACCC
1 ACCACAACCCTCAGTTCTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCC
* ** * * * * *
25671300 ACGAAATGAGTGTACGGGCACTCAGCCGGCCTGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTC
66 ACGAAACGAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTC
* * * * *
25671365 GATCCCTCTTGCATGCTATCGATCCTACTG-CTGCAACCCTCGTTCCGATCTGATCTTAGACTGG
131 GATCCCCCCTGCATGCTGTCGATCCTGCTGTC-GCAACCCTCGATCCGATCTGATCTTAGACTGG
*
25671429 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAATCAACCCATGAAACGAG
195 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
*** ** * *
25671494 CGTGTTGGCGCTCAGCCGGTCGGAGAGCCCGATCGGAGAGGTATAATATGCAAGCCGGGGATCAG
260 CGTACAGGCGCTCAGCCGACCGGAGAGGCCGAT-GGAGAGGTATAATGTGCAAGCCGGGGATCAG
* ** * * * *
25671559 CCCGATCCCTCTCTATGTACTATCGATCCCACTTCTGGTCTTGC
324 CCCGATCCCCCTCTACATGCTA-CGATCCCACTGCTAGTCCTGC
* *
25671603 GCCACAACCCTCAGTTC-GGCTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCC
1 ACCACAACCCTCAGTTCTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCC
* * * * * * *
25671667 ACAAAATGAGCGTGCGGGCGCTCAGCC-GACTAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCT
66 ACGAAACGAGCATGCGGGCGCTCAGCCGGTC-GGAGAGGCAGAATGCGCAAGCCAGGGATCGGCT
* * * * * * *
25671731 CGGTCCCCCCTGCATGCTGTGGATCTTGCTGTCGCAACCTTCGGTCTGAT-TCAATCTTAGACTG
130 CGATCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGATCT-GATCTTAGACTG
* * *
25671795 GGAATGAACTCCATATGCTTAGACTGGGGAT-AAGCTTCGTATGCCTAAGTCAACCCACGGAACG
194 GGAATGAACTCCATATGCTTAGACTGGGGATGAA-CTCCGTATGCCTAAGTCAACCCATGAAACG
* * * * * * *
25671859 AGCGTACGGGCGTTCAGCCGACCGGAGTGGTCGATTGGTGAGGCATAATGTGCAAGCCGAGGATC
258 AGCGTACAGGCGCTCAGCCGACCGGAGAGGCCGA-TGGAGAGGTATAATGTGCAAGCCGGGGATC
* * * *
25671924 AACCCGATCCCCCTCTACATGCTGCCGATCCCGCTGCAAGTCCTGC
322 AGCCCGATCCCCCTCTACATGCT-ACGATCCCACTGCTAGTCCTGC
* * * *
25671970 TACCACAACCTTCCA--TCTGGTTGGGGGTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAAC
1 -ACCACAACCCT-CAGTTCTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
* * * * *
25672033 CCACGAAACGAGCATGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAGTCAAGGATTGGC
64 CCACGAAACGAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGC
* * * * * * * * *
25672098 TC-AGTCCCTCCTACGTGCTGTTGATCTTGCTGCCGCAACCTTCGATCCGATCCGATCTTAGATT
129 TCGA-TCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACT
* *
25672162 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATG
193 GGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
**
25672227 AGCGTGTAGGCGCTCAGCCG
258 AGCGTACAGGCGCTCAGCCG
25672247 GCTAGAGAGG
Statistics
Matches: 836, Mismatches: 153, Indels: 39
0.81 0.15 0.04
Matches are distributed among these distances:
362 1 0.00
363 233 0.28
364 3 0.00
366 5 0.01
367 354 0.42
368 235 0.28
369 5 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (366 bp):
ACCACAACCCTCAGTTCTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTC
GATCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGG
AATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
GTACAGGCGCTCAGCCGACCGGAGAGGCCGATGGAGAGGTATAATGTGCAAGCCGGGGATCAGCC
CGATCCCCCTCTACATGCTACGATCCCACTGCTAGTCCTGC
Found at i:25672183 original size:26 final size:26
Alignment explanation
Indices: 25672154--25672206 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25672144 CCGATCCGAT
*
25672154 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25672180 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25672206 C
1 C
25672207 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25673433 original size:26 final size:27
Alignment explanation
Indices: 25673381--25673434 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
25673371 GCGGTTCGAT
25673381 CTTAGACTCGGGAATGAACTCCATATG
1 CTTAGACTCGGGAATGAACTCCATATG
* *
25673408 CTTAGACT-GGGGATGAACTCCGTATG
1 CTTAGACTCGGGAATGAACTCCATATG
25673434 C
1 C
25673435 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 17 0.68
27 8 0.32
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (27 bp):
CTTAGACTCGGGAATGAACTCCATATG
Found at i:25674588 original size:26 final size:26
Alignment explanation
Indices: 25674559--25674609 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25674549 GATCCGATCT
*
25674559 TAGACT-GGGATTGAACTCCGTATGCG
1 TAGACTGGGGA-TGAACTCCATATGCG
25674585 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGGGGATGAACTCCATATGC
25674610 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGGATGAACTCCATATGCG
Found at i:25675251 original size:26 final size:26
Alignment explanation
Indices: 25675222--25675274 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25675212 CTGGTCCGAT
25675222 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
25675248 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25675274 C
1 C
25675275 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25675616 original size:26 final size:26
Alignment explanation
Indices: 25675587--25675639 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25675577 CCGATCCAAT
25675587 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25675613 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25675639 C
1 C
25675640 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25675805 original size:184 final size:183
Alignment explanation
Indices: 25675429--25675861 Score: 573
Period size: 184 Copynumber: 2.4 Consensus size: 183
25675419 TCCGGCTGGG
* * * ** * * *
25675429 GCTTAGAC-GTGGAATGTACTCCATATGCCTAAGCCAACATACGTAACGAGCGTGCGGGTGCTCA
1 GCTTAGACTG-GGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * *
25675493 TCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCACCCTGCGTGCTGTCGATCT
65 GCCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGATCACCCTGCGTGCTGTCGATCC
* * *
25675558 TGCTGCTGAAACCCTTAATCCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
130 TGCTGCCGAAACCCTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
25675612 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
25675677 CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACTCGGTCCCCCCTGTGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGAT-CACCCTGCGTGCTGTCGATCC
* * ** *
25675742 TGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACAT-TATAT
130 TGCTGCCGAAACCCTCAATCCGATCCAATCTTAGACTGGGAATGAAC-TCCATAT
* *
25675796 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
25675861 C
66 C
25675862 TGACCAGAAA
Statistics
Matches: 219, Mismatches: 28, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
183 91 0.42
184 127 0.58
185 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (183 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGATCACCCTGCGTGCTGTCGATCCT
GCTGCCGAAACCCTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
Done.