Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 264 of 402
Found at i:25677883 original size:26 final size:26
Alignment explanation
Indices: 25677854--25677928 Score: 141
Period size: 26 Copynumber: 2.9 Consensus size: 26
25677844 TCCGATCTTA
25677854 GACTGGGGATGAACTCCGTATGCTTG
1 GACTGGGGATGAACTCCGTATGCTTG
*
25677880 GACTGGGGATGAACTCCATATGCTTG
1 GACTGGGGATGAACTCCGTATGCTTG
25677906 GACTGGGGATGAACTCCGTATGC
1 GACTGGGGATGAACTCCGTATGC
25677929 CTCAGTCAAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.25
Consensus pattern (26 bp):
GACTGGGGATGAACTCCGTATGCTTG
Found at i:25678300 original size:356 final size:357
Alignment explanation
Indices: 25677685--25678760 Score: 952
Period size: 368 Copynumber: 3.0 Consensus size: 357
25677675 TGTCAGTCTC
* * * * **
25677685 GCTACCACAACCCTCGGTCCGACTAGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAAC
1 GCTACCACAACCATCAGTCCGGCTAGGGCTTAGACATGGAATGTACTCCATATGCCTAAGCCAAC
* * * * * * * ** * *
25677750 CCACGAAACGAGCATGCGGGTGTTAAGCTGACCAGAGAGGCAGAATGTGCAAGCCAAGGATCGGC
66 CCACTAAACGAGCGTTCGGGAGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGAC
* * * * **** *
25677815 CTAGTCCCCCCCACGTGCTACCGATCC-AAT-CCGATCTTAGACTGGGGAT--GAACTCCGTATG
131 CTGGTCCACCCTACGTGCTACCGATCCTACTGCCG--C--A-ACCCTCGATCCG-A-TCTG-AT-
* * * * *
25677876 CTTGGACTGGGGATGAACTCCATATGCTTGGACTGGGGATGAACTCCGTATGCCTCAGTCAACCC
187 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
*
25677941 ACGAAACGAGCATGCAGGTGCTCAACCGACCAGAGAGGCAGGATGCGCAAGTCAGGGATCGAACG
252 ACGAAACGAGCGTGC-GG-GCTCAACCGACCAGAGAGGCAGGATGCGCAAGTCAGGGATCGAACG
25678006 GGTGGTAGGTGGGTTCAAGCACATCTTCATATGC-CTAAGTCCT
315 GGTGGTAGGTGGGTTCAAGCACATCTTCATATGCTC-AAGTCCT
* **
25678049 GCTGCCACAACCATCAGTCCGGCTAGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAAC
1 GCTACCACAACCATCAGTCCGGCTAGGGCTTAGACATGGAATGTACTCCATATGCCTAAGCCAAC
* * * *
25678114 CCA-TGAAATGAGCG-TGGGGCA-CTCAGCC-AGCCAGAG-GGCAGAATGCATAAGCCGGGGATC
66 CCACT-AAACGAGCGTTCGGG-AGCTCAGCCGA-CCAGAGAGGCAGAATGCACAAGCCAGGGATC
* * * * * *
25678174 GACTTGGT-CACCCTACGTGCTATCGATCCTGCTGCTGTAACCCTCGATCCGGTCTGATCTTAGA
128 GACCTGGTCCACCCTACGTGCTACCGATCCTACTGCCGCAACCCTCGATCCGATCTGATCTTAGA
** *
25678238 CTGGGAATGAACTCCGTATGCTTAGACCAGGGATGAACTCCGTATGTCTAAGTCAACCCACGAAA
193 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
** *
25678303 CGAGCGTGCGGGCATTCAACCGGTCAGAGAGGCA-G--GC-CAGAG--AGGCATAACATGCAAGC
258 CGAGCGTGCGGGC--TCAACCGACCAGAGAGGCAGGATGCGCA-AGTCAGGGAT--C--G-AA--
* * *** ** *
25678362 CGAG-GATCAGCCCGGTCCTC-CTCTACGAGCTGTCGATCCA-GCTGCAAGTCCT
313 CGGGTGGT-AGGTGGGT--TCAAGC-AC-ATCT-TC-AT--ATGCT-CAAGTCCT
* * * *
25678414 GCTACCACAACCCTCAGTTCGGCTGGGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAAC
1 GCTACCACAACCATCAGTCCGGCTAGGGCTTAGACATGGAATGTACTCCATATGCCTAAGCCAAC
* * * *
25678479 CCACTAAACGAGCGTTCGGGAGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCTAGGGATCGGC
66 CCACTAAACGAGCGTTCGGGAGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGAC
* * * * * *
25678544 CTGGTCCCCCCTGCGTGCTGCCGATCTTACTGCCGCAACCCTCGATCTGATCTGATCTTAGACAG
131 CTGGTCCACCCTACGTGCTACCGATCCTACTGCCGCAACCCTCGATCCGATCTGATCTTAGACTG
* * * *
25678609 GGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCCGTATGCCCAAGTCAACCCATGAAACAA
196 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * *
25678674 GCGTGCGGGCACTCAACC-ACCAGAGAGGCAGGATACGTAAGTCGGGGATCGAACGGGTGGTAGG
261 GCGTGCGGG--CTCAACCGACCAGAGAGGCAGGATGCGCAAGTCAGGGATCGAACGGGTGGTAGG
25678738 TGGGTTCAAGCACATCTTCATAT
324 TGGGTTCAAGCACATCTTCATAT
25678761 TTTTGCCATG
Statistics
Matches: 564, Mismatches: 103, Indels: 95
0.74 0.14 0.12
Matches are distributed among these distances:
351 5 0.01
352 2 0.00
353 5 0.01
354 2 0.00
355 4 0.01
356 90 0.16
357 4 0.01
358 17 0.03
359 2 0.00
360 7 0.01
361 23 0.04
362 31 0.05
363 21 0.04
364 73 0.13
365 86 0.15
366 19 0.03
367 40 0.07
368 123 0.22
370 5 0.01
371 1 0.00
372 4 0.01
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.20
Consensus pattern (357 bp):
GCTACCACAACCATCAGTCCGGCTAGGGCTTAGACATGGAATGTACTCCATATGCCTAAGCCAAC
CCACTAAACGAGCGTTCGGGAGCTCAGCCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGAC
CTGGTCCACCCTACGTGCTACCGATCCTACTGCCGCAACCCTCGATCCGATCTGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCGGGCTCAACCGACCAGAGAGGCAGGATGCGCAAGTCAGGGATCGAACGGGTGGTAGGTG
GGTTCAAGCACATCTTCATATGCTCAAGTCCT
Found at i:25679418 original size:26 final size:26
Alignment explanation
Indices: 25679382--25679434 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25679372 CTGATCCGAT
25679382 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
25679408 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
25679434 C
1 C
25679435 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:25679789 original size:26 final size:26
Alignment explanation
Indices: 25679753--25679805 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
25679743 GATCTGTCTA
25679753 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
25679779 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
25679805 C
1 C
25679806 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:25683404 original size:26 final size:26
Alignment explanation
Indices: 25683366--25683418 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25683356 GGCACAAAAT
* *
25683366 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25683392 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
25683418 C
1 C
25683419 CTAAGCCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25684376 original size:159 final size:158
Alignment explanation
Indices: 25683991--25684451 Score: 383
Period size: 159 Copynumber: 2.9 Consensus size: 158
25683981 GTCTTATTGC
** * *
25683991 CACAACCCTCGGTCCGACTGGGGCTCAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACG
1 CACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * *
25684056 AAATGAGCGTGCGGGCACTCAACCGGCCTGAGAGGTAGAATGTGCAAGTCGAGGATCGATCCGGT
66 AAATGAGCGTGCGAGCACTCAACCAGCCTGAGAGGTAGAATGCGCAAGTCGAGGATCGATCCGGT
* *
25684121 CCCCCCTGCGTGCTATCGATCCTACTGA
131 CCCCCCTGCGTGCTATAGATCCCACTGA
* * ** ** ** * * ***
25684149 CGCAACCCTCAGTCTAGTCCGATCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCTGT
1 CACAACCCTCGGTCCGGTTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAC
* ** * * * *
25684213 GAAATGAGCGTGTGAGTGCTGAGCCAGCC-GAAGAGGTATAATGCGCAAG-CTGAGGATC-AGCT
65 GAAATGAGCGTGCGAGCACTCAACCAGCCTG-AGAGGTAGAATGCGCAAGTC-GAGGATCGATC-
* * * * *
25684275 CGGTCCCCCTCTGTGTGCTGTAGGTCCCGCTGG
127 CGGTCCCCC-CTGCGTGCTATAGATCCCACTGA
** *
25684308 CACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGGGCTCCCTATGCCTAAGCCAACCCACG
1 CACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * * * * * * * **
25684373 AAATGGGCGTGCGGGCACGCAGCC-GAACAGAGAGGTAGAATGTGCAAGCCGGGGATCGACCCAT
66 AAATGAGCGTGCGAGCACTCAACCAG-CCTGAGAGGTAGAATGCGCAAGTCGAGGATCGATCCGG
*
25684437 TCCCCTCTGCGTGCT
130 TCCCCCCTGCGTGCT
25684452 GCCAATCCTG
Statistics
Matches: 227, Mismatches: 66, Indels: 20
0.73 0.21 0.06
Matches are distributed among these distances:
157 5 0.02
158 108 0.48
159 109 0.48
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
CACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
AAATGAGCGTGCGAGCACTCAACCAGCCTGAGAGGTAGAATGCGCAAGTCGAGGATCGATCCGGT
CCCCCCTGCGTGCTATAGATCCCACTGA
Found at i:25684828 original size:684 final size:674
Alignment explanation
Indices: 25683624--25684882 Score: 1625
Period size: 684 Copynumber: 1.9 Consensus size: 674
25683614 CGTGCTACCC
*
25683624 GTCCCACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAG
1 GTCCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAG
* * * * * *
25683689 CCAACCCAAGAAACGGGGGTGCCCAGCGCTCAGCCGACCGAAGAGGCTGAATGCGTAATCCGGGG
66 CCAACCCAAGAAACGGGCGTGCCCAGCACGCAGCCGACAGAAGAGGCTGAATGCGCAAGCCGGGG
* *
25683754 ATCGACCCGGTCCCCCTTGCGTGCTGCCGTAGCCCTCGATCCAATTCGATCTTAGACTAGGAATG
131 ATCGACCCAGTCCCCCTTGCGTGCTGCCGTAGCCCTCGATCCAATCCGATCTTAGACTAGGAATG
* * *
25683819 AACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCCAAAGCCAACCCATGAAACGAGCATGC
196 AACTCCATATGCTTAGACTGGAGATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCATGC
* * *
25683884 GGGTGCTCAGTCGACCAGAGAGGTCGATCGGAGAGGCATAATGTGCAAGTTGGGGATAAGCCCGA
261 GGGTGCTCAGCCGACCAGAGAGGTCGATCGGAGAGGCATAATGCGCAAGTCGGGGATAAGCCCGA
* * * * *
25683949 TCGCCCTCTATGTGCTGTCGATCCCGCTACCTGTCTTATTGCCACAACCCTCGGTCCGACTGGGG
326 TCGCCCTCTATGTGCTGCCGATCCCGCTACCGGTCCTACTACCACAACCCTCGGTCCGACTGGGG
*
25684014 CTCAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAAC
391 CTCAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* * *
25684079 CGGCCTGAGAGGTAGAATGTGCAAGTCGAGGATCGATCCGGTCCCCCCTGCGTGCTATCGATCCT
456 CGGCCTGAGAGGCAGAATGCGCAAGTCGAGGATCGATCCGGTCCCCCCTGCGTGCTAGCGATCCT
*
25684144 ACTGA-CGCAACCCTC-AGTCTAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCA
521 ACT-ATCGCAACCCTCGA-TCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCA
25684207 ACCTGTGAAATGAGCGTGTGAGTGCTGAGCCAGCCGAAGAGGTATAATGCGCAAGCTGAGGATCA
584 ACCTGTGAAATGAGCGTGTGAGTGCTGAGCCAGCCGAAGAGGTATAATGCGCAAGCTGAGGATCA
25684272 GCTCGGTCCCCCTCTGTGTGCTGTAG
649 GCTCGGTCCCCCTCTGTGTGCTGTAG
* * * *
25684298 GTCCCGCTGGCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGGGCTCCCTATGCCTAAG
1 GTCCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAG
* * ** *
25684363 CCAACCCACGAAATGGGCGTG-CGGGCACGCAGCCGAACAG-AGAGG-TAGAATGTGCAAGCCGG
66 CCAACCCAAGAAACGGGCGTGCCCAGCACGCAGCCG-ACAGAAGAGGCT-GAATGCGCAAGCCGG
* * *
25684425 GGATCGACCCA-TTCCCCTCTGCGTGCTGCCAATCCTGTTGTCGTAACCTTC-AGTCCAGTCCGA
129 GGATCGACCCAGTCCCCCT-TGCGTGCTG-----CC-GTAG-C----CC-TCGA-TCCAATCCGA
* * * *
25684488 TCTTAGACTGGGAATGAACTCTATAT-CTTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAAC
180 TCTTAGACTAGGAATGAACTCCATATGC-TTAGACTGGAGATGAACTCCGTATGCCAAAGCCAAC
* * *
25684552 CCACGAAACGAGCGTGCGGGTGCTCGGCCGACC-GAAGAGGTCGGTCGGAGAGGCATAATGCGCA
244 CCACGAAACGAGCATGCGGGTGCTCAGCCGACCAG-AGAGGTCGATCGGAGAGGCATAATGCGCA
* * * * *
25684616 AGTCGGGGATCAA-CTCGATC-CCC-CTTTGCATGTTGCCGAT-CTGCTACCGGTCCTGCTACCA
308 AGTCGGGGAT-AAGCCCGATCGCCCTCTATG--TGCTGCCGATCCCGCTACCGGTCCTACTACCA
* * *
25684677 CAACCCTCGGTCC-AGCTGGGGCTTAGACATGGAATGTACTCCGTATGCTTAAGCCAACCCATGA
370 CAACCCTCGGTCCGA-CTGGGGCTCAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGA
** *
25684741 AACGAGCG-GACGGGTGCTCAGCCGG-CTGGAGAGGCAGAATGCGCAAGTCGAGGATCGATCCGG
434 AACGAGCGTG-CGGGCACTCAACCGGCCT-GAGAGGCAGAATGCGCAAGTCGAGGATCGATCCGG
* * * *
25684804 TCCCCCCTGCGTGC-AGCTGATCCTACTATCGTAACCCTCGATCCAGTTCGATCTTAGATTGGGA
497 TCCCCCCTGCGTGCTAGC-GATCCTACTATCGCAACCCTCGATCCAGTCCGATCTTAGACTAGGA
25684868 ATGAACTCCGTATGC
561 ATGAACTCCGTATGC
25684883 TTAGACTGGG
Statistics
Matches: 499, Mismatches: 59, Indels: 44
0.83 0.10 0.07
Matches are distributed among these distances:
672 7 0.01
673 46 0.09
674 81 0.16
678 2 0.00
679 3 0.01
680 1 0.00
683 11 0.02
684 200 0.40
685 146 0.29
686 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (674 bp):
GTCCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAG
CCAACCCAAGAAACGGGCGTGCCCAGCACGCAGCCGACAGAAGAGGCTGAATGCGCAAGCCGGGG
ATCGACCCAGTCCCCCTTGCGTGCTGCCGTAGCCCTCGATCCAATCCGATCTTAGACTAGGAATG
AACTCCATATGCTTAGACTGGAGATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCATGC
GGGTGCTCAGCCGACCAGAGAGGTCGATCGGAGAGGCATAATGCGCAAGTCGGGGATAAGCCCGA
TCGCCCTCTATGTGCTGCCGATCCCGCTACCGGTCCTACTACCACAACCCTCGGTCCGACTGGGG
CTCAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAC
CGGCCTGAGAGGCAGAATGCGCAAGTCGAGGATCGATCCGGTCCCCCCTGCGTGCTAGCGATCCT
ACTATCGCAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCATAAGTCAAC
CTGTGAAATGAGCGTGTGAGTGCTGAGCCAGCCGAAGAGGTATAATGCGCAAGCTGAGGATCAGC
TCGGTCCCCCTCTGTGTGCTGTAG
Found at i:25685606 original size:26 final size:26
Alignment explanation
Indices: 25685577--25685629 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25685567 GGCTCAAAAT
** *
25685577 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
25685603 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
25685629 C
1 C
25685630 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:25686113 original size:26 final size:26
Alignment explanation
Indices: 25686077--25686129 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25686067 CTGATTCGAT
25686077 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25686103 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25686129 C
1 C
25686130 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25686481 original size:26 final size:26
Alignment explanation
Indices: 25686445--25686497 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25686435 CCAGTCTGAT
* *
25686445 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
25686471 CTTAGACTGGGGATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
25686497 C
1 C
25686498 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:25687185 original size:26 final size:26
Alignment explanation
Indices: 25687155--25687207 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25687145 AGCTCAAAAT
*
25687155 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
25687181 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25687207 C
1 C
25687208 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25687554 original size:159 final size:159
Alignment explanation
Indices: 25687180--25687682 Score: 404
Period size: 159 Copynumber: 3.2 Consensus size: 159
25687170 AGCTCCGTAT
* * *
25687180 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTAAG
* * * * * *
25687245 TCGACCGGAGAGGTAGAATGTGCAAGCCGGAGATCGACCCGGTCCCCTCCTGTGTGCTGTCGATC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGGAGATCGACCCGATCCCCTCCTGCGTGCTGTCGATC
** * * ***
25687310 ATGCTACCGCAACCCTCAGTCTGGTCTGA
131 ACACTACCACAACACTCAGTCCAATCTGA
* * * *
25687339 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTAA
* * * * * *
25687403 GCCGACTGAAGATGCATAATGCGCAAGCCGGGGATCGGCCCGATCCTCCT-CTGCGTGCTGTCGG
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCGGAGATCGACCCGATCC-CCTCCTGCGTGCTGTCGA
* * *
25687467 TCCCACTACCACAACACTCGGTCCAAT-TGGG
129 TCACACTACCACAACACTCAGTCCAATCT-GA
* * * * *
25687498 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATG-AACTGGGCATGCGGGCGC-AC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GAGCGTGCGGGCACTA-
* * * * * *
25687561 AG-CTAGCAGGAGAGGCAGAATGCGCAAGTC-GAGGATCGGCCC--TGCCCC-CCTGCGTGCTGC
64 AGCCGA-CCGAAGAGGCAGAATGCGCAAGCCGGA-GATCGACCCGAT-CCCCTCCTGCGTGCTGT
* *
25687621 CGATC-CTGCTGCCACAAC-CTTC-GATCCAATCTGA
126 CGATCAC-ACTACCACAACAC-TCAG-TCCAATCTGA
* *
25687655 TCTTAGGC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
25687683 TCAGATTGGG
Statistics
Matches: 275, Mismatches: 54, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
156 4 0.01
157 57 0.21
158 12 0.04
159 198 0.72
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTAAG
CCGACCGAAGAGGCAGAATGCGCAAGCCGGAGATCGACCCGATCCCCTCCTGCGTGCTGTCGATC
ACACTACCACAACACTCAGTCCAATCTGA
Found at i:25688043 original size:26 final size:26
Alignment explanation
Indices: 25688001--25688052 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25687991 TCCAGTCTGA
25688001 TCTTAGACTAGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
* * *
25688027 TCTTAGACTGGGGATGAACTCTGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
25688053 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCGTAT
Found at i:25688659 original size:26 final size:26
Alignment explanation
Indices: 25688630--25688685 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
25688620 GGCTCAAAAT
*
25688630 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25688656 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25688682 CTTA
1 CTTA
25688686 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25689160 original size:26 final size:26
Alignment explanation
Indices: 25689131--25689183 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25689121 CCGGTTCGAT
25689131 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
25689157 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25689183 C
1 C
25689184 GTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25690405 original size:27 final size:26
Alignment explanation
Indices: 25690351--25690401 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25690341 ATCCGATTTT
25690351 AGACTGGGAATGAACTCTATATGCTA
1 AGACTGGGAATGAACTCTATATGCTA
* *
25690377 AGACTGGGGATGAACTCTGTATGCT
1 AGACTGGGAATGAACTCTATATGCT
25690402 TAAGTCAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
AGACTGGGAATGAACTCTATATGCTA
Found at i:25691648 original size:26 final size:26
Alignment explanation
Indices: 25691607--25691659 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25691597 TCGATCCAAT
*
25691607 CTTAGACTAGGAATGAACGGCGTATG
1 CTTAGACTAGGAATGAACGCCGTATG
* * *
25691633 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACGCCGTATG
25691659 C
1 C
25691660 CTAAGTCAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACGCCGTATG
Found at i:25692003 original size:26 final size:26
Alignment explanation
Indices: 25691974--25692026 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25691964 CCGGTCTGAT
25691974 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*** *
25692000 CTTAGACTTTTAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25692026 C
1 C
25692027 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25692312 original size:356 final size:358
Alignment explanation
Indices: 25691451--25692503 Score: 1185
Period size: 356 Copynumber: 2.9 Consensus size: 358
25691441 TCCATATGCG
* * * * * **
25691451 TAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCACGAAACAGGCATGCAGGCTTTCAGCC
1 TAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAACCCACGAAAGA-GCGTGCGGGCGCTCAGCC
* * *
25691515 AACCGGAGAGGCAGAATGCGCAAG-TCGAGGATCGGCCTGATCCCCCTTGCGTGCTGTCGATCCT
64 GATCGGAGAGGCAGAATGCGCAAGCT-GAGGATCGGCC-GATCCCCCTTGCGTGCTGCCGATCCT
* * * ** ** *
25691579 GCTGCCGCAACCCTTGGTTCGATCCAATCTTAGACTAGGAATGAACGGCGTATGCTTAGACTGGG
127 GCTACCGCAACCCTTGATTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTTGG
* * *
25691644 GATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTACGGGCGCTCAACCAGTTGGAAAG
192 GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCAGTCGGAAAG
* * * * *
25691709 GCCGGCTGGAGAGGGA-AATGAACAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGAT
257 GCTGGCTGGAGAGGCATAATGCACAAGCCAGGGATCAGCTCGATCCCCCTCTGCGTGCTGCCGAT
*
25691773 CCTGCTGCTGGTCCTACTACCACAACCCTTGGTCCGACTGGGGCT
322 CC-GCTGCTGG-----C--CCACAACCCTCGGTCCGACTGGGGCT
* *
25691818 TAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCCCAGTCG
1 TAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAA-GAGCGTGCGGGCGCTCAGCCG
* * * * * * *
25691883 GTCGAAGAGGCAAAATGCGCAAGCTGAGGATCGACCCGATCCCCTTTGCGTGCTACCGATCCTAC
65 ATCGGAGAGGCAGAATGCGCAAGCTGAGGATCG-GCCGATCCCCCTTGCGTGCTGCCGATCCTGC
* * ***
25691948 -AGCCGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTTTA
129 TA-CCGCAACCCTTGATTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTTGGG
* * * * *
25692012 ATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAGCATGCGGGCACTCAGCCAGTCGGAAAGG
193 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCAGTCGGAAAGG
* * ** * *
25692077 TTGGTTGGAGAGGCATAATGCGTAAGCC-GAGGATCAGCTCGATCCCCCTCTGTGTGCTGTCGAT
258 CTGGCTGGAGAGGCATAATGCACAAGCCAG-GGATCAGCTCGATCCCCCTCTGCGTGCTGCCGAT
25692141 -C-CTGCT-G-CCACAACCCTCGGTCCGACTGGGGCT
322 CCGCTGCTGGCCCACAACCCTCGGTCCGACTGGGGCT
* *
25692174 TAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCG
1 TAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAA-GAGCGTGCGGGCGCTCAGCCG
* * * * *
25692239 ATCGGAGAGGCAGAATGCGCAAGCT-AGGGATCGGTCCGGTCCCCCCTGTGTACTGGCGATCCTG
65 ATCGGAGAGGCAGAATGCGCAAGCTGA-GGATCGG-CCGATCCCCCTTGCGTGCTGCCGATCCTG
** * *
25692303 CTACCGCAACCCTCAATTCGGTTTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGA-TTGGG
128 CTACCGCAACCCTTGATTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTT-GG
* * * * * *
25692367 GATGAACTCCATATGCCTAAGTCAATCCATGAAACGAGCGTGCAGACGCTCAACC-GATCGGAGA
192 GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCAG-TCGGAAA
* *
25692431 GGCTGGCCGGAGAGGCATAATGCACAAGCCAGGGATCAGCTCGATCCCCCTCTGCGTGCTACCGA
256 GGCTGGCTGGAGAGGCATAATGCACAAGCCAGGGATCAGCTCGATCCCCCTCTGCGTGCTGCCGA
25692496 TCCCGCTG
321 T-CCGCTG
25692504 TCGGTCCTGC
Statistics
Matches: 573, Mismatches: 97, Indels: 40
0.81 0.14 0.06
Matches are distributed among these distances:
355 4 0.01
356 291 0.51
357 2 0.00
358 1 0.00
359 3 0.01
364 1 0.00
365 5 0.01
367 222 0.39
368 44 0.08
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (358 bp):
TAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAAGAGCGTGCGGGCGCTCAGCCGA
TCGGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCGATCCCCCTTGCGTGCTGCCGATCCTGCTA
CCGCAACCCTTGATTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTTGGGATG
AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCAGTCGGAAAGGCTG
GCTGGAGAGGCATAATGCACAAGCCAGGGATCAGCTCGATCCCCCTCTGCGTGCTGCCGATCCGC
TGCTGGCCCACAACCCTCGGTCCGACTGGGGCT
Found at i:25693120 original size:26 final size:26
Alignment explanation
Indices: 25693091--25693143 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25693081 CCGGTCCAAT
25693091 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
25693117 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
25693143 C
1 C
25693144 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:25693427 original size:26 final size:26
Alignment explanation
Indices: 25693398--25693450 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25693388 CCGGTCTGAT
25693398 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25693424 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25693450 C
1 C
25693451 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25693681 original size:159 final size:158
Alignment explanation
Indices: 25693423--25693767 Score: 372
Period size: 159 Copynumber: 2.2 Consensus size: 158
25693413 AACTCCGTAT
* * * * *
25693423 GCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTCAA
1 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAAGAGCATGCGGGCACTCAA
* ** * * * *
25693488 TCGGTCGAAAAGGCATAATGCGCAAGCCAGGGATCAGCCTAGTCCCCCTCTGCGTTCTACCGGTC
66 CCGACCGAAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCAGTCCCCC-CTGCGTGCTACCGATC
25693553 CTGCTACCACAACTCTCGATCTGGCTGGG
130 CTGCTACCACAACTCTCGATCTGGCTGGG
* **
25693582 GCTTAGAC-GTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAAAGAGCATGCGGGTGCTCA
1 GCTTAGACTG-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAAGAGCATGCGGGCACTCA
* * * * *
25693646 GCCGACCGGAGAGGCAGAATGCGCAAGCC-GAGGATCAGCCCGGTCCCTCCTGCGTGCTACCGAT
65 ACCGACCGAAAAGGCAGAATGCGCAAGCCAG-GGATCAGCCCAGTCCCCCCTGCGTGCTACCGAT
** * * * *
25693710 CCTGCTGTCGCAACCCTCGATCTAGACT-GA
129 CCTGCTACCACAACTCTCGATCT-GGCTGGG
* * *
25693740 TCTTAGACTGGGGATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCTGTATGC
25693768 TTAGACTGGG
Statistics
Matches: 152, Mismatches: 30, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
158 57 0.38
159 95 0.62
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAAGAGCATGCGGGCACTCAA
CCGACCGAAAAGGCAGAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCCTGCGTGCTACCGATCC
TGCTACCACAACTCTCGATCTGGCTGGG
Found at i:25693777 original size:26 final size:26
Alignment explanation
Indices: 25693741--25693819 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
25693731 CTAGACTGAT
25693741 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
**
25693767 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGGATGAACTCCGTATG
25693793 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
25693819 C
1 C
25693820 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:25694847 original size:159 final size:158
Alignment explanation
Indices: 25694515--25695018 Score: 428
Period size: 159 Copynumber: 3.2 Consensus size: 158
25694505 AGCTCCGTAT
* *
25694515 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * *
25694580 TCGGCTAGAGAGGTAGAATGCGCAAGCTGGGGATCGACCCAGTCCCCCCTACGTGCTGTCAATCC
66 CCGGCGAGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCAATCC
* * **
25694645 TGCTACAGCAACCCTCGGTCTGGTCTGA
131 CGCTACAACAACCCTCGGTCCAGTCTGA
* * * * * * * *
25694673 TCTTAGACATGGGAATGAACTCCATAAGCATAAGTCAACCCATGAAACGAGCGTGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* * * * * *
25694738 GCCGGTCGA-AAAGGCATAATGCGCATGCCGGGGATC-AGCCC-GATCCCTCTCTGCGTGTTTTC
65 GCCGG-CGAGAAAGGCAGAATGCGCAAGCCGGGGATCGA-CCCAG-TCCC-CCCTACGTGCTGTC
* *
25694800 AGTCCCGCTACAACAACCCTCGGTCCAG-CTGGG
126 AATCCCGCTACAACAACCCTCGGTCCAGTCT-GA
* * * * * *
25694833 GCTTAGACATGGAATGAGCTCCTTATGCCTAAGGCAACCCACAAAATGGGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * * * *
25694898 CCGATC-AGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGT-CCCCCTGACGTGCTGTCGAT
66 CCG-GCGAGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCT-ACGTGCTGTCAAT
** * * * ***
25694961 CCTACTGCCACAACCCTCGATATGGTCTGA
129 CCCGCTACAACAACCCTCGGTCCAGTCTGA
* *
25694991 TCTTAGAC-TGGGAATGAACTCCTTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
25695019 TTAGACTAGG
Statistics
Matches: 269, Mismatches: 64, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
157 4 0.01
158 64 0.24
159 155 0.58
160 46 0.17
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
CCGGCGAGAAAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCAATCC
CGCTACAACAACCCTCGGTCCAGTCTGA
Found at i:25695033 original size:26 final size:26
Alignment explanation
Indices: 25694992--25695044 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25694982 ATGGTCTGAT
*
25694992 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25695018 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
25695044 C
1 C
25695045 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25695352 original size:26 final size:26
Alignment explanation
Indices: 25695316--25695371 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
25695306 CCGGTTCGAT
*
25695316 CTTAGACT-GGGAGTGAACTCTGTATG
1 CTTAGACTGGGGA-CGAACTCTGTATG
25695342 CTTAGACTGGGGACGAACTCTGTATG
1 CTTAGACTGGGGACGAACTCTGTATG
25695368 CTTA
1 CTTA
25695372 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGACGAACTCTGTATG
Found at i:25696024 original size:26 final size:26
Alignment explanation
Indices: 25695988--25696040 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25695978 CTGATCTGAT
25695988 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
25696014 CTTAGATTGGGCATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
25696040 C
1 C
25696041 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:25696372 original size:26 final size:26
Alignment explanation
Indices: 25696343--25696395 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25696333 CCGATCCTAT
25696343 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25696369 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25696395 C
1 C
25696396 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25696665 original size:368 final size:362
Alignment explanation
Indices: 25695803--25696813 Score: 1190
Period size: 368 Copynumber: 2.8 Consensus size: 362
25695793 GTCGGTCCCA
25695803 CTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAAC
1 CTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGTA-CTCCCTATGCCTAAGCCAA-
* * * *
25695867 CAATGAAACGGGCATGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGC
64 CAATGAAACGAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGACGAGGATCGGC
* * * *
25695932 CCGGTCCCCCCTGCGTGCTACTGATCCTACTGTA-GCAACCCTC-AGTCTGATCTGATCTTAGAT
129 CTGGTCCCCCCTGCGTGCTACCGATCCTACTG-ACGTAACCCTCGA-TCTGATCTGATCTTAGAC
* *
25695995 TGGGAATGAACTCCGTATGCTTAGATTGGGCATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
192 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
* * * * *
25696060 GAGCGTGCGGGCACTCA---G-CC----GGTCGGAGAGGCATAATGTGCAAGCCAAGCATCAGCT
257 GAGCGTGCGGGCGCTCAGCCGACCGAGAGGTCGGAGAGGCATAAAGCGCAAGCCAAGCACCAGCC
* * **
25696117 CGATCCCCCTTTGCATGCTATCAATCTCGTTGCCGATCTTG
322 CGATCCCCCTCTGCATGCTATCAATCCCACTGCCGATCTTG
* * *
25696158 CTGCCACAACCCTCGGT-CTAGCTAGGGCTTAGACATGGAATGTACTCCCTATGCCTAAGCCAAC
1 CTGCCACAACCCTCGGTCCGA-TTGGGGCTTAGACATGGAATGTACTCCCTATGCCTAAGCCAA-
* * * * * * *
25696222 CCATGAAACGAGCGTGCAGGCGCTCAGTCGGCCGGAGAGGCAGAATGCACAA-ACTAGGGATCGG
64 CAATGAAACGAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGACGA-GGATCGG
* * * *
25696286 TCTGGTCCCCCCTACGTGCTGCCGATCCTAC-GACCGTAACCCTCGATCCGATCCT-ATCTTAGA
128 CCTGGTCCCCCCTGCGTGCTACCGATCCTACTGA-CGTAACCCTCGATCTGAT-CTGATCTTAGA
25696349 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAA
191 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * * *
25696414 CGAGCATGCAGGCGCTCAGCCGACCGGAGAGGTCGGTCGAAGAGGCATAAAGCGTAAGCCGAGGA
256 CGAGCGTGCGGGCGCTCAGCCGACC-GAGAGGTC-G--G-AGAGGCATAAAGCGCAAGCCAAGCA
* * * * *
25696479 CCTGCCCGATCCCCCTCTGCGTGCTGTCGATCCCACTGCCGGTCTTG
316 CCAGCCCGATCCCCCTCTGCATGCTATCAATCCCACTGCCGATCTTG
* * ** *
25696526 CTGTCACAACCCTCGATCCGATTGGGGCTTAGACATGGAATGTACTCTGTAGGCCTAAGCCAACA
1 CTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGTACTCCCTATGCCTAAGCCAACA
* * * * * *
25696591 TACGAAACGAGCATGCGGGGGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCGAAGATCGGCC
66 -ATGAAACGAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGACGAGGATCGGCC
* * * *
25696656 TGATCCCCCCTGCGTGCTATCGATCCTGCTG-CTGTAACCCTCGATCTGATCTGATCTTAGGCTG
130 TGGTCCCCCCTGCGTGCTACCGATCCTACTGAC-GTAACCCTCGATCTGATCTGATCTTAGACTG
* * * **
25696720 AGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATTA
194 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
25696785 GCGTGCGGGCGCTCAGCCGACCAGAGAGG
259 GCGTGCGGGCGCTCAGCCGACC-GAGAGG
25696814 CAAGATGCGT
Statistics
Matches: 550, Mismatches: 80, Indels: 39
0.82 0.12 0.06
Matches are distributed among these distances:
353 1 0.00
354 4 0.01
355 231 0.42
356 4 0.01
358 1 0.00
359 2 0.00
364 4 0.01
365 1 0.00
367 5 0.01
368 292 0.53
369 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (362 bp):
CTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGTACTCCCTATGCCTAAGCCAACA
ATGAAACGAGCATGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGACGAGGATCGGCCT
GGTCCCCCCTGCGTGCTACCGATCCTACTGACGTAACCCTCGATCTGATCTGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
GTGCGGGCGCTCAGCCGACCGAGAGGTCGGAGAGGCATAAAGCGCAAGCCAAGCACCAGCCCGAT
CCCCCTCTGCATGCTATCAATCCCACTGCCGATCTTG
Found at i:25697357 original size:11 final size:11
Alignment explanation
Indices: 25697341--25697367 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
25697331 CGGTTAGGCT
25697341 CTCCGGTGATG
1 CTCCGGTGATG
25697352 CTCCGGTGATG
1 CTCCGGTGATG
25697363 CTCCG
1 CTCCG
25697368 ACGATGGTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.33, G:0.33, T:0.26
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:25698758 original size:26 final size:26
Alignment explanation
Indices: 25698729--25698781 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25698719 CCGGTCTGAT
*
25698729 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
25698755 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
25698781 C
1 C
25698782 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:25699132 original size:26 final size:26
Alignment explanation
Indices: 25699096--25699148 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25699086 CCGGTTCGAT
25699096 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25699122 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25699148 C
1 C
25699149 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25699492 original size:26 final size:26
Alignment explanation
Indices: 25699463--25699515 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25699453 CCGGTCCGAT
25699463 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
25699489 CTTAGACTGGGGATGACCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25699515 C
1 C
25699516 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25699832 original size:366 final size:366
Alignment explanation
Indices: 25698540--25699905 Score: 1479
Period size: 367 Copynumber: 3.7 Consensus size: 366
25698530 GTGCTGTCGA
* *
25698540 TCCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAG
1 TCCTGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACGTGGAATGTA-CT-CCTATGCCTAAG
* * ** *
25698604 CCAACCCATGAAAC-AGGCGTGCGGGTGCTCAACCGACTC-GAGAGGCAGAATGCGTAAGT-TGA
64 CCAACCCACGAAACGA-GCGTGCGGGTGCTCAACCGGC-CGGAGAGGCAGAATGCACAAGTCAG-
* * * * *
25698666 GGATCGGCCCGGT-CCCCCTACGTGGTGTCAATCCTGCTGTCGTAACCCTCTG-TCCGGTCTGAT
126 GGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTC-GATCCGGTCTGAT
* **
25698729 CTTAAACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
190 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* ** * * * * * * **
25698794 ATGAAA-AATGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCCTACCGGAGAGTCATAACGCACAAG
255 ATGAAACGA-GCGTGCGGGCATTCAACCGGTCAGAGAGGCCAACCGGAGAGGCATAATGCGTAAG
* * * * *
25698858 -CTGGGGATCAGTCCGTTCCTCCTTTACGTGCTATCGATCCTGCAAT-CGG
319 CCT-GGGATCAGTCCGATCCCCCTCTACGTGCTATCGATCC--CACTGCAG
* * * *
25698907 TGCTGCTGCCACAACCCTCGATCCGGCT-GTGCTTAGACGTGGAATGTACTTCGTATGCCTAAGG
1 TCCTGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACGTGGAATGTAC-TCCTATGCCTAAGC
* * * * * * *
25698971 CAACCCATGAAACAAACGTGCAGGG-GCTCAGCCGGCCGGAGAGGTAGAATGAACAAGCCAGGGA
65 CAACCCACGAAACGAGCGTGC-GGGTGCTCAACCGGCCGGAGAGGCAGAATGCACAAGTCAGGGA
* * * * * * *
25699035 T-GGCCTCGATCCCTCCTGCGTGCTATCGATCCTACTGCCGCAACCCTTGATCCGGT-TCGATCT
129 TCGACC-CGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCT-GATCT
25699098 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAT
192 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAT
** * *
25699163 GAAACGAGCGTGCGGGCATTCAACCGACCAGAGAGGCCAACCGAAGAGGCATAATACGTAAGCC-
257 GAAACGAGCGTGCGGGCATTCAACCGGTCAGAGAGGCCAACCGGAGAGGCATAATGCGTAAGCCT
* * ** * * *
25699227 GAGGATAAGTCTGATCCCCCTCTGTGAGCTGTCGATCCCGCTGCCAG
322 G-GGATCAGTCCGATCCCCCTCTACGTGCTATCGATCCCACTG-CAG
* * * ** * *
25699274 TCTTGCTACCACAACCCTCGGTCTAGCTAGGGCTTAAACGTGGAATGTACTCCTATGCCTAAGCC
1 TCCTGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACGTGGAATGTACTCCTATGCCTAAGCC
* ** * ** * * **
25699339 AACCCACGAAATGAGTATGCAGGCACTCAGCCAGCCGGAGAGGCAGAATGCGTAAGTCAGGGATC
66 AACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCGGAGAGGCAGAATGCACAAGTCAGGGATC
* * * * * * * * *
25699404 GATCTGGTCCCGCCTACGTGCTGCCGATCCTGGTGTCGCAACCTTTGATCCGGTCCGATCTTAGA
131 GACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGA
* * *
25699469 CTAGGAATGAACTCCGTATGCTTAGACTGGGGATGACCTCCGTATGCCTAAGTCAACCCATGAAA
196 CTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * *
25699534 CGAGCGTGCGGGCATTCAACCGGTC-GAAAGGCCGATCGGAGAGGAATAATGCGTAAGCCTGGGA
261 CGAGCGTGCGGGCATTCAACCGGTCAGAGAGGCCAACCGGAGAGGCATAATGCGTAAGCCTGGGA
* *
25699598 TCAGCCCAATCCCCCTCTACGTGCTATCGATCCCACTGCTAG
326 TCAGTCCGATCCCCCTCTACGTGCTATCGATCCCACTGC-AG
* * * *
25699640 TCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTGGATGTGGAATCTACTCCATATGCCTAAGC
1 TCCTGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACGTGGAATGTACTCC-TATGCCTAAGC
* * *
25699705 CAA-CCACGAAACGAGCGTGCGGGTGCTTAACCGGTCGGAGAGGCAGAATGCACAA-TCCGGGGA
65 CAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCGGAGAGGCAGAATGCACAAGT-CAGGGA
* * * *
25699768 TCGATCCGGTCCCCCCTACGTGCTGTCGATCCTGTTACCGCAACCCTCGATCCGATCTGATCTTA
129 TCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTA
*
25699833 GACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
194 GACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGA
25699898 AACGAGCG
259 AACGAGCG
25699906 CGTAGGCGCT
Statistics
Matches: 828, Mismatches: 148, Indels: 47
0.81 0.14 0.05
Matches are distributed among these distances:
365 9 0.01
366 357 0.43
367 439 0.53
368 23 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (366 bp):
TCCTGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACGTGGAATGTACTCCTATGCCTAAGCC
AACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCCGGAGAGGCAGAATGCACAAGTCAGGGATC
GACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGA
CTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAA
CGAGCGTGCGGGCATTCAACCGGTCAGAGAGGCCAACCGGAGAGGCATAATGCGTAAGCCTGGGA
TCAGTCCGATCCCCCTCTACGTGCTATCGATCCCACTGCAG
Found at i:25699865 original size:26 final size:26
Alignment explanation
Indices: 25699829--25699881 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25699819 CCGATCTGAT
25699829 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25699855 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25699881 C
1 C
25699882 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25701214 original size:319 final size:318
Alignment explanation
Indices: 25700564--25701371 Score: 771
Period size: 319 Copynumber: 2.5 Consensus size: 318
25700554 AGCTTCATAT
* * * * *
25700564 GCTTAGACATGGAAT-ACACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTTCGGGCGTTTA
1 GCTTAGACATGGAATGA-GCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTCA
* * * * *
25700628 GCTGGCCGGAGAGGCAGAATGCGTAAGCCGGAGATCGACCCAGTCTCCCCCTCTGTGCTGTCAAT
65 GCCGGCCGAAAAGGCAGAATGCGTAACCCGGAGATCAACCCAGTCTCCCCCTCTGTGCTGTCAAT
* * * * *
25700693 CCTGCTACCGTAACCCTCGATCCGGTCCGATCTTAGATTGGGAATGAACTCAGTATGCATATGTC
130 CCTGCTACCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAAAGAACTCAGTATGCATAAGTC
** **
25700758 AACCCACGAAACGAGCGTACAGGCACTGAACCGACCGAAGAGGCATAATGTGCAAGCCGGGGATC
195 AACCCACGAAACGAGCGTACAGGCACTGAACCGACCGAAGACACATAATGCACAAGCCGGGGATC
* * * * * * * * *
25700823 AGCTCAGTCCCCCTCTACATGCTGTCGGTATCGTTGCCATAACACTCGGTCTGACTATG
260 ACCTCAGTCCCCCTCTACATACTGCCGGTACCGCTGCCACAACACTCAGTCCGACTAGG
* *
25700882 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGC-TATCA
1 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGT-TCA
* * *
25700946 GCCGGCCGAAAAGGCATAATGCGTAAACCCAGG-GATCAACCCGGTC-CCCTCT-TGCATGCTGT
65 GCCGGCCGAAAAGGCAGAATGCGT-AACCC-GGAGATCAACCCAGTCTCCCCCTCTG--TGCTGT
* * * * *
25701008 CGATCCTGCTACTGCAACCTTC-AGTTCGGTCCAATCTTAGACTGGGAAAGAAGTTC-GTATGCA
126 CAATCCTGCTACCGCAACCCTCGA-TCCGGTCCAATCTTAGACTGGGAAAGAA-CTCAGTATGCA
* * * ** *
25701071 TTAAGTTCAACCCACGAAACGAGCGTGCGGGCGCTGAGTCGA-CGAAGACACATAATGCACAAGT
189 -TAAG-TCAACCCACGAAACGAGCGTACAGGCACTGAACCGACCGAAGACACATAATGCACAAGC
* * * *
25701135 CGGGGATCGACCTGA-TCCCCCTCTACGTACTGCCGGTCCCGCTGCCACAACCCTCAGTCCGACT
252 CGGGGATC-ACCTCAGTCCCCCTCTACATACTGCCGGTACCGCTGCCACAACACTCAGTCCGACT
25701199 -GG
316 AGG
* * * * *
25701201 GTTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACG-GCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTCAG
* * * ** * ** * *
25701265 CCGGTCGGAGAGGCAGAATGCACAAGCCAGG-GATCGGCCC-GATC-CCCCCTATGTGCTGTCGA
66 CCGGCCGAAAAGGCAGAATGCGTAA-CCCGGAGATCAACCCAG-TCTCCCCCTCTGTGCTGTCAA
* * * * * * *
25701327 TCCTACTGCCGCAACACTCGGTCTGATCCGATCTTAGACTGGGAA
129 TCCTGCTACCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAA
25701372 TAAACCCCAT
Statistics
Matches: 400, Mismatches: 74, Indels: 34
0.79 0.15 0.07
Matches are distributed among these distances:
316 44 0.11
317 21 0.05
318 111 0.28
319 118 0.29
320 71 0.18
321 35 0.09
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (318 bp):
GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGTTCAG
CCGGCCGAAAAGGCAGAATGCGTAACCCGGAGATCAACCCAGTCTCCCCCTCTGTGCTGTCAATC
CTGCTACCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAAAGAACTCAGTATGCATAAGTCA
ACCCACGAAACGAGCGTACAGGCACTGAACCGACCGAAGACACATAATGCACAAGCCGGGGATCA
CCTCAGTCCCCCTCTACATACTGCCGGTACCGCTGCCACAACACTCAGTCCGACTAGG
Found at i:25701756 original size:26 final size:26
Alignment explanation
Indices: 25701727--25701779 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25701717 CCGGTCCGAT
25701727 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
25701753 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
25701779 C
1 C
25701780 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:25702842 original size:26 final size:26
Alignment explanation
Indices: 25702806--25702858 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25702796 CTGGTCCAAT
25702806 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25702832 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25702858 C
1 C
25702859 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25703210 original size:26 final size:26
Alignment explanation
Indices: 25703174--25703226 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25703164 CCAATCCAAT
25703174 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25703200 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25703226 C
1 C
25703227 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25703550 original size:158 final size:157
Alignment explanation
Indices: 25703366--25703812 Score: 436
Period size: 158 Copynumber: 2.8 Consensus size: 157
25703356 TCTGACTGGG
* * *
25703366 GCTTAGAC-GTGGAATGTACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCACTCA
1 GCTTAGACTG-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * *
25703430 GCCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCACGTCCCCCCTACGCGCTGTCGATC
65 GCCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-CGTCCCCCCTGCGTGCTGTCGATC
*** * *
25703495 CTGCTGTTGCCACCCTCAATCAGG-TCCGA
129 CTGCTGCCACAACCCACAATCAGGCT-CGA
* * * * ** *
25703524 TCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGTGCTAAG
1 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
25703589 TCAATCGAAGAGGCATAAT-CGCAAGCCGGAGATCGGCCCGGTCCCTCTCTGCGTGCTG-CTGAT
66 CCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC-GTCCC-CCCTGCGTGCTGTC-GAT
** * * *
25703652 CCTGCTGCCACAACCCACGGTCCGGCTGGG
128 CCTGCTGCCACAACCCACAATCAGGCTCGA
* ** * *
25703682 GCTTAGACAT-GGAATGAGCTCCATATGCCCAAGCTAACCCACGAAACGAGCGTGCGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * *
25703746 ACCGGTCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTATCGATC
65 GCCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCG-TCCCCCCTGCGTGCTGTCGATC
25703811 CT
129 CT
25703813 ACTACCGTAA
Statistics
Matches: 229, Mismatches: 51, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 23 0.10
158 179 0.78
159 26 0.11
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCAGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCACAATCAGGCTCGA
Found at i:25703825 original size:158 final size:153
Alignment explanation
Indices: 25703331--25703828 Score: 428
Period size: 158 Copynumber: 3.2 Consensus size: 153
25703321 GATCCCGCTG
* *
25703331 TCGATCCTACTACCACAACCCTCGGTCTGACTGGGGCTTAGACGTGGAATGTACTCTGTATGCCT
1 TCGATCCTACTACCACAACCCTCGGTCAGGCTGGGGCTTAGAC-TGGAATG-ACTCTGTATGCCT
* * * *
25703396 AAGCCAACCCACAAAATGAGCGTGCGGGCACTCAGCCAGTCGAAGAGGCAGAATGCGCAAGCCGG
64 AAGCTAACCCACGAAACGAGCGTGCGGGCACTCAACCAGTCGAAGAGGCAGAATGCGCAAGCC-G
* * *
25703461 GGATCGACCACGTCCCCCCTACGCGCT
128 GGATCGGCC-CGTCCCCCCTGCGTGCT
* **** * ** * **
25703488 GTCGATCCTGCTGTTGCCACCCTCAATCAGG-TCCGATCTTAGACTGGGAATGAACTCTGTATGC
1 -TCGATCCTACTACCACAACCCTCGGTCAGGCT-GGGGCTTAGACT-GGAATG-ACTCTGTATGC
* * ** * * *
25703552 ATAAG-TCAACCCATGAAACGAGCGTGCGGGTGCT-AAGTCAATCGAAGAGGCATAAT-CGCAAG
62 CTAAGCT-AACCCACGAAACGAGCGTGCGGGCACTCAA-CCAGTCGAAGAGGCAGAATGCGCAAG
*
25703614 CCGGAGATCGGCCCGGTCCCTCTCTGCGTGCT
125 CCGG-GATCGGCCC-GTCCC-CCCTGCGTGCT
* * * * * **
25703646 GCTGATCCTGCTGCCACAACCCACGGTCCGGCTGGGGCTTAGACATGGAATGAGCTCCATATGCC
1 TC-GATCCTACTACCACAACCCTCGGTCAGGCTGGGGCTTAGAC-TGGAATGA-CTCTGTATGCC
* * * *
25703711 CAAGCTAACCCACGAAACGAGCGTGCGGGCACTCAACCGGTCGGAGAGGTAGAATGCGCAAGCCG
63 TAAGCTAACCCACGAAACGAGCGTGCGGGCACTCAACCAGTCGAAGAGGCAGAATGCGCAAGCCG
25703776 AGGATCGGCCCGATCCCCCCTGCGTGCT
128 -GGATCGGCCCG-TCCCCCCTGCGTGCT
**
25703804 ATCGATCCTACTACCGTAACCCTCG
1 -TCGATCCTACTACCACAACCCTCG
25703829 ATCGAGTCCA
Statistics
Matches: 262, Mismatches: 61, Indels: 34
0.73 0.17 0.10
Matches are distributed among these distances:
156 3 0.01
157 25 0.10
158 205 0.78
159 28 0.11
160 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (153 bp):
TCGATCCTACTACCACAACCCTCGGTCAGGCTGGGGCTTAGACTGGAATGACTCTGTATGCCTAA
GCTAACCCACGAAACGAGCGTGCGGGCACTCAACCAGTCGAAGAGGCAGAATGCGCAAGCCGGGA
TCGGCCCGTCCCCCCTGCGTGCT
Found at i:25704765 original size:25 final size:26
Alignment explanation
Indices: 25704731--25704782 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25704721 CTGGTCCAAT
25704731 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25704756 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25704782 C
1 C
25704783 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25705879 original size:159 final size:160
Alignment explanation
Indices: 25705467--25705906 Score: 431
Period size: 159 Copynumber: 2.8 Consensus size: 160
25705457 TTGGGAATGA
* * *
25705467 GCTCCATATGCTTAAACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCG
1 GCTCCA-AT-CTTAGACATGGAATGAGCTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCG
* * * *
25705532 GGCGCTCAACCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCAACCCGGT-CCCCTCTTGCAT
64 GGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTTACAT
* * * ** * *
25705596 GCTGTCGATCCTGCTGCTGCAACCTTCAGTTC
129 ACTGCCGATCCCGCTGCCACAACCCTCAGTCC
* * * * * *
25705628 GGTCCAATCTTAGAC-TGGGAAAGAAG-TTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCG
1 GCTCCAATCTTAGACAT-GGAATG-AGCTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCG
* ** * ** * * * * *
25705691 GGCGCTGAGTCGACCGAAGACACATAATGCGCAAGCCGGGGATCGACCTGATCCCCCTC-TACGT
64 GGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTTACAT
*
25705755 ACTGCCGGTCCCGCTGCCACAACCCTCAGTCC
129 ACTGCCGATCCCGCTGCCACAACCCTCAGTCC
**** * * *
25705787 GACTGGGGT-TTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGG
1 G-CTCCAATCTTAGACATGGAATGAGCTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGG
* *
25705851 GCGCTCAACCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCC
65 GCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCC
25705907 CTATGTGCTG
Statistics
Matches: 217, Mismatches: 56, Indels: 14
0.76 0.20 0.05
Matches are distributed among these distances:
158 3 0.01
159 197 0.91
160 12 0.06
161 5 0.02
ACGTcount: A:0.26, C:0.32, G:0.26, T:0.17
Consensus pattern (160 bp):
GCTCCAATCTTAGACATGGAATGAGCTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG
CGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTTACATAC
TGCCGATCCCGCTGCCACAACCCTCAGTCC
Found at i:25706350 original size:26 final size:26
Alignment explanation
Indices: 25706321--25706373 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25706311 CCGGTCCGAT
25706321 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
25706347 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
25706373 C
1 C
25706374 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:25707576 original size:26 final size:26
Alignment explanation
Indices: 25707540--25707618 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
25707530 CCGATCCGAT
*
25707540 CTTAGACTGGGAGTGAACTCTATATG
1 CTTAGACTGGGAGTGAACTCCATATG
25707566 CTTAGACTGGGAGTGAACTCCATATG
1 CTTAGACTGGGAGTGAACTCCATATG
*
25707592 CTTAGACTGGG-GATGAACTCCGTATG
1 CTTAGACTGGGAG-TGAACTCCATATG
25707618 C
1 C
25707619 CTAAGCCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
25 1 0.02
26 49 0.98
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAGTGAACTCCATATG
Found at i:25707975 original size:26 final size:26
Alignment explanation
Indices: 25707934--25707986 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25707924 CCAGTCTGAT
25707934 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
25707960 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25707986 C
1 C
25707987 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25708248 original size:355 final size:355
Alignment explanation
Indices: 25707566--25708769 Score: 1282
Period size: 355 Copynumber: 3.3 Consensus size: 355
25707556 ACTCTATATG
* * *
25707566 CTTAGACTGGGAGTGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
25707631 ACGAAACAAGCGTGCGAGCGCTCAGCGGGCCGAAGAGGCCAGTCAGAGAGGCATAATGTGTAGGT
66 ACGAAACGAGCGTGCGGGCACTCA----ACC--AGA-G-C---CAGAGAGGCATAATGCGTAAGC
* * * * * *
25707696 CGGGGATCAGCCCGATCCCTCTTTGCGTGCTGTCGATCTCACTGCCGGTCCTACTACCACAACCC
120 CGAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCTTACCG-CGATCCTACTACCACAACCC
* * * * * *
25707761 TCAGTCCGGTTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAACCACGAAACGAGC
184 TCGGTCTGGTTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAATGAGT
* * * *
25707826 GTGCGGGCGCTCAGCTGGTCGAAGAGGCAGAATGCGCAAGCC-AGAGATC-GACTTGGTCCCTCC
249 GTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAG-GATCAG-C-TGATCCCCCC
* *
25707889 TGCGTGCTATCGATCCTGCTGTCGCAACCCTTGATCCAGTCTGAT
311 TGCGTGCTACCGATCCTGCTGCCGCAACCCTTGATCCAGTCTGAT
* * * * *
25707934 CTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAGGTCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCC
* *
25707999 ACGAAACGAGCGTGCGGGCACTCAACC-GA-CCAGAGAGGCATAATGCGCAAGCCGAGGACCAGC
66 ACGAAACGAGCGTGCGGGCACTCAACCAGAGCCAGAGAGGCATAATGCGTAAGCCGAGGATCAGC
* * *
25708062 CCGATCCCCCTCGGCATGCTGTCGATCTTACCGTCGATCCTACTACCACAACCCTCGGTTTGGTT
131 CCGATCCCCCTCTGCGTGCTGTCGATCTTACCG-CGATCCTACTACCACAACCCTCGGTCTGGTT
*
25708127 GGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCACT
195 GGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCT
* * * * *
25708192 CATCC-GACTGGAGAGGTAGAATGCACAAGCCGAGGATCAGCTCGATCCCCCCTGCGTGCTGCCG
260 CAGCCGGTC-GGAGAGGCAGAATGCGCAAGCCGAGGATCAGCT-GATCCCCCCTGCGTGCTACCG
* * *
25708256 ATCTTGCAGCCGCAACCCTTGATCCAGTCCGAT
323 ATCCTGCTGCCGCAACCCTTGATCCAGTCTGAT
* * *
25708289 CTTAGACTGGAAATGAACTCTATATGCTTAGACTAGGGATGAACTCCGTATGACTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
25708354 ATGAAACGAGCATGCAGGCGCTCAACCGACTGAAGACGCCAGTCGGAAAGGCATAAGGTGTAAGC
66 ACGAAACGAGCGTGCGGGCACTCAA-C--C---AGA-GCCA----GAGAGGCATAATGCGTAAGC
* * * *
25708419 C-AGGAATCAGCCCGATCCCCCTCTGCGTGCT-ACCA--AT-CC-CGATCCTACTGCCACAACCC
120 CGAGG-ATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCTTACCGCGATCCTACTACCACAACCC
* * *
25708478 TCGGTCTGGCTAGGGCTTAGATGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAATGAGT
184 TCGGTCTGGTTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAATGAGT
* * * * * *
25708543 GTACGGGTGTTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATTGACCTGATCCCCTCTG
249 GTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGA-TCAGCTGATCCCCCCTG
* * * **
25708608 TGTGCTACCGATCCTGCTACCGCAACCCTCGATCTGGTCTGAT
313 CGTGCTACCGATCCTGCTGCCGCAACCCTTGATCCAGTCTGAT
* ***
25708651 CTTAGACTGGGAATAAACTCTGCATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * **
25708716 ATGAAACGAGCGCGCGGGCACTCAGCC-GA-CCAGAGAGGCAGGATGCGTAAGCCG
66 ACGAAACGAGCGTGCGGGCACTCAACCAGAGCCAGAGAGGCATAATGCGTAAGCCG
25708770 GAGATCGAAC
Statistics
Matches: 707, Mismatches: 108, Indels: 60
0.81 0.12 0.07
Matches are distributed among these distances:
349 16 0.02
353 3 0.00
354 3 0.00
355 294 0.42
356 4 0.01
358 2 0.00
359 1 0.00
361 3 0.00
362 242 0.34
363 6 0.01
364 7 0.01
365 1 0.00
367 5 0.01
368 120 0.17
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (355 bp):
CTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCACTCAACCAGAGCCAGAGAGGCATAATGCGTAAGCCGAGGATCAGC
CCGATCCCCCTCTGCGTGCTGTCGATCTTACCGCGATCCTACTACCACAACCCTCGGTCTGGTTG
GGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTC
AGCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCTGATCCCCCCTGCGTGCTACCGATC
CTGCTGCCGCAACCCTTGATCCAGTCTGAT
Found at i:25708703 original size:26 final size:26
Alignment explanation
Indices: 25708651--25708703 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
25708641 CTGGTCTGAT
*
25708651 CTTAGACTGGGAATAAACTCTGCATG
1 CTTAGACTGGGAATAAACTCCGCATG
* *
25708677 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATAAACTCCGCATG
25708703 C
1 C
25708704 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGCATG
Found at i:25709828 original size:159 final size:157
Alignment explanation
Indices: 25709398--25709819 Score: 436
Period size: 159 Copynumber: 2.7 Consensus size: 157
25709388 AGCTCCATAT
* *
25709398 GCTTAGACATGGAATAAACTTCGTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAG-GCGTGCGGGCGCTCA
* * * * * * *
25709462 ACCGGCCGGATAGGCAGAATGCGCAAGCCGGGGATCGACCCAACCCCCCCTGCGTGCTGTCGATC
65 GCCGGCC-GAGAGGCAGAATGCGCAAGCCGGGGATCGACCGATCCCCCTCTACGTGCTATCGATC
* * * *
25709527 CTACTGCCATAACCCTCAGTCTGGTTTGA
129 CCACTGCCACAACCCTCAGTCCGGTTGGA
* * * * * *
25709556 TCTTAGAC-TGGGAATGAACTCCGTATGCATAGGTCAACCCACGAAACCA-GCGTGCGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-CAGGCGTGCGGGCGCTC
* * * * * * *
25709619 AGCCGGTCGAAGAGGCATAATGCACAAGCCGAGGATTGGCCCGATCCCCCTCTACGTGCTATCGG
64 AGCCGGCCG-AGAGGCAGAATGCGCAAGCCGGGGA-TCGACCGATCCCCCTCTACGTGCTATCGA
** ** *
25709684 TCCCGTTGCCACAACCCTTGGTCCGGTTGGG
127 TCCCACTGCCACAACCCTCAGTCCGGTTGGA
* * *
25709715 GGTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAG
* *
25709780 CTGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACCG
66 CCGGCC-GAGAGGCAGAATGCGCAAGCCGGGGATCGACCG
25709820 GTTGCCCCTG
Statistics
Matches: 208, Mismatches: 48, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 84 0.40
159 120 0.58
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAG
CCGGCCGAGAGGCAGAATGCGCAAGCCGGGGATCGACCGATCCCCCTCTACGTGCTATCGATCCC
ACTGCCACAACCCTCAGTCCGGTTGGA
Found at i:25709909 original size:26 final size:26
Alignment explanation
Indices: 25709873--25709925 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25709863 CCGGTTTGAT
* * *
25709873 CTTAGATTGGGAATGGACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25709899 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25709925 C
1 C
25709926 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25710331 original size:355 final size:353
Alignment explanation
Indices: 25709675--25710671 Score: 1243
Period size: 355 Copynumber: 2.8 Consensus size: 353
25709665 CCCCTCTACG
* * * * * *
25709675 TGCTATCGGTCCCGTTGCCACAACCCTTGGTCCGGTTGGGGGTTAGACATGGAATG-AGCTCCCT
1 TGCTATCGGTCCTGTTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAGA-GGAATGTA-CTCCGT
* *
25709739 ATGCCTAAGCCAACCCAC-GAAAC-AGGCGTGCGGGCGCTCAG-CTGGCCAGAGAGGTAGAATGC
64 ATGCCTAAGCCAACCCACAG-AACGA-GCGTGCGGGCGCTCAGTC-GGCCGGAGAGGCAGAATGC
* * * * * *
25709801 GCAAGCCGGGGATCGACCGGTTGCCCCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCG
126 GCAAGCCGGGGATCGGCCGGTCGCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCG
** * * **
25709866 GTTTGATCTTAGATTGGGAATG-GACT-CTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTA
191 GTCCGATCTTAGACTGGGAATGAG-CTCCT-TATGCTTAGATTGGGGATGAACTCTATATGCCTA
* * * * *
25709929 AGTCAACCCATGAAATGAGCGTGCGGGTGCTCAGCTGGCCAGAGAGGCATAATGCGTAAGCCGAG
254 AGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCGGGCCAGAGAGGCATAATGCGCAAGCCGAG
*
25709994 GATCAGCCTGATCCCCCTATGCGTGTTGCCGATCC
319 GATCAGCCCGATCCCCCTATGCGTGTTGCCGATCC
* *
25710029 TGCTATCGGTCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGATGAGGAATGTACTCCGTA
1 TGCTATCGGTCCTGTTGCCACAACCCTCGGTCCGGCTGGGGCTTAGA-GAGGAATGTACTCCGTA
*
25710094 TGCCTAAGCCAACCCACAGAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAA
65 TGCCTAAGCCAACCCACAGAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAA
* * * * * * *
25710159 GCCGAGGATCGGCCTGATCCCCCCTGTGTGTTACCGTTCCTACTACCGTAACCCTCGATCCGGTC
130 GCCGGGGATCGGCC-GGTCGCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCGGTC
* *
25710224 CGATCTTAGACTAGGAATGAGCTCCTTATGCTTAGATTAGGGATGAACTCTATATGCCTAAGTCA
194 CGATCTTAGACTGGGAATGAGCTCCTTATGCTTAGATTGGGGATGAACTCTATATGCCTAAGTCA
* * *
25710289 ACCCATGAAACGAGCATGCGTGCGCTCAGCGGGCCGGAGAGGCATAATGCGCAAGTCGAGGATCA
259 ACCCATGAAACGAGCATGCGGGCGCTCAGCGGGCCAGAGAGGCATAATGCGCAAGCCGAGGATCA
* *
25710354 GCCCGGTCCCCCTCTGCGTGTTGCCGATCC
324 GCCCGATCCCCCTATGCGTGTTGCCGATCC
* ** * * **
25710384 CGCTGCCGATCCTGTTGCCACAACCCTCGATCCGGCTGGGGCTTAGACGTTGAATGTACTCCGTA
1 TGCTATCGGTCCTGTTGCCACAACCCTCGGTCCGGCTGGGGCTTAGA-GAGGAATGTACTCCGTA
* * * * *
25710449 TGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAGTCGACCGGAGGGGCAGAATACGCAA
65 TGCCTAAGCCAACCCACAGAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAA
* * * **
25710514 GCCGGGGATCGGCCCGGTCGCCCCTACGTGCTAACGATCCTATTGTCGCAACCCTCGATCCGGTC
130 GCCGGGGATCGG-CCGGTCGCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCGGTC
* * * *
25710579 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATAAACT-TCATATGCCTAAGTT
194 CGATCTTAGACTGGGAATGAGCTCCTTATGCTTAGATTGGGGATGAACTCT-ATATGCCTAAGTC
* *
25710643 AACCCATGAAACGAGCATGCAGGCACTCA
258 AACCCATGAAACGAGCATGCGGGCGCTCA
25710672 ATCGACTAGA
Statistics
Matches: 553, Mismatches: 80, Indels: 19
0.85 0.12 0.03
Matches are distributed among these distances:
354 122 0.22
355 426 0.77
356 5 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (353 bp):
TGCTATCGGTCCTGTTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAGAGGAATGTACTCCGTAT
GCCTAAGCCAACCCACAGAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAG
CCGGGGATCGGCCGGTCGCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCGGTCCG
ATCTTAGACTGGGAATGAGCTCCTTATGCTTAGATTGGGGATGAACTCTATATGCCTAAGTCAAC
CCATGAAACGAGCATGCGGGCGCTCAGCGGGCCAGAGAGGCATAATGCGCAAGCCGAGGATCAGC
CCGATCCCCCTATGCGTGTTGCCGATCC
Found at i:25711374 original size:26 final size:26
Alignment explanation
Indices: 25711338--25711390 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25711328 CCGGTCTGAT
*
25711338 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25711364 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25711390 C
1 C
25711391 CTAAGTCCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25711648 original size:26 final size:26
Alignment explanation
Indices: 25711609--25711662 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
25711599 AGTCCAATCT
* * *
25711609 TAGACTGGGAATGAACTTCGTATGCC
1 TAGAATGGGAATGAACTCCGTATCCC
*
25711635 TAGAATGGGGATGAACTCCGTATCCC
1 TAGAATGGGAATGAACTCCGTATCCC
25711661 TA
1 TA
25711663 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGAATGGGAATGAACTCCGTATCCC
Found at i:25711665 original size:269 final size:269
Alignment explanation
Indices: 25711179--25711666 Score: 646
Period size: 269 Copynumber: 1.8 Consensus size: 269
25711169 AGCTCCGTAT
* ** * *
25711179 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGAGGGTGGGCGGTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGAGAGCATGGGCGCTCAA
* * * *
25711244 CCAGTCGGAGAGGCAGAATGCATAAGCCGGGGATCGACCCTGTCCCCCTTGCGTGCTGTCGATCC
66 CCAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCTTGCATGCTGTCGATCC
** * * ** * *
25711309 TACTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG
131 TACTACCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAGAATGG
*
25711374 GGATGAACTCCGTATGCCTAAGTCCCCTTTTACGTGCTGCCGATCCCACTGCCACAACCCTCGGT
196 GGATGAACTCCGTATCCCTAAGTCCCCTTTTACGTGCTGCCGATCCCACTGCCACAACCCTCGGT
25711439 CTGGCTGGG
261 CTGGCTGGG
* ** *
25711448 GCTTAGACGTGGAATGTGCTCCCTATGCCTAAGCCAACCCATGAAACG-G-GCATGCAGGCGCTC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGAGAGCATG--GGCGCTC
* * *
25711511 AACTAGCCGGAGAGGTAGAATGCGCAA-CTCGGGGATCGACCCGGTCCTCCC-TGCATGCTG-CT
64 AACCAGCCGGAGAGGCAGAATGCACAAGC-CGGGGATCGACCCGGTCC-CCCTTGCATGCTGTC-
*
25711573 GATCCTGCTACCGCAACCCTC-AGTCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTA
126 GATCCTACTACCGCAACCCTCGA-TCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTA
25711637 GAATGGGGATGAACTCCGTATCCCTAAGTC
190 GAATGGGGATGAACTCCGTATCCCTAAGTC
25711667 AACCCATGAA
Statistics
Matches: 187, Mismatches: 26, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
267 3 0.02
268 4 0.02
269 177 0.95
270 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (269 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGAGAGCATGGGCGCTCAA
CCAGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCTTGCATGCTGTCGATCC
TACTACCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAGAATGG
GGATGAACTCCGTATCCCTAAGTCCCCTTTTACGTGCTGCCGATCCCACTGCCACAACCCTCGGT
CTGGCTGGG
Found at i:25713099 original size:159 final size:158
Alignment explanation
Indices: 25712915--25713414 Score: 470
Period size: 159 Copynumber: 3.1 Consensus size: 158
25712905 TCCGTAAGTG
* * * * *
25712915 AACCCATGAAATGAGCGTGCGGGCGCTGAGCCTGTCGAAGAGGCATAATGCGCAAGCCTGGGATC
1 AACCCACGAAACGGGCGTGCGGGCGCTGAGCC-GTCGAAGAGGCACAATGCGCAAGCCGGGGATC
* * * *
25712980 GGCCCGGTCCCTCTCGGCGTGCTGTCGGTCCCGCTACCACAACCCTCGATCCGGCTGGGGCTTAG
65 GACCCGGTCCCTCTCTGCGTGCTGTCGGTCCTGCTACCACAACCCTCGATCCGACTGGGGCTTAG
* * *
25713045 ACGTAGAATGAGCTCCCTATGCCTAAGCC
130 ACATGGAATAAGCTCCCTATGCCTAAGCC
* * * * * * * *
25713074 AACCCACAAAACGGGCGTGCAGGCGCTCAGTCGATTGGAGAGGCAGAATGCTCAAGCCGGGGATC
1 AACCCACGAAACGGGCGTGCGGGCGCTGAGCCG-TCGAAGAGGCACAATGCGCAAGCCGGGGATC
* * * * * * **
25713139 GACCCAGTCCC-CCCTGCGTTCTGTCGATCCTGTTGCCACAACCCTCGAATCCGATCT-GATCTT
65 GACCCGGTCCCTCTCTGCGTGCTGTCGGTCCTGCTACCACAACCCTCG-ATCCGA-CTGGGGCTT
* * * *
25713202 AGA-TTGGGAATAAACTCCGTAT-CCATAAGTC
128 AGACAT-GGAATAAGCTCCCTATGCC-TAAGCC
* * * * * * *
25713233 AACCCACGAAATGGGTGTACGGGTGCTGAGCCGACTGAAGATGCACAATGCGCAAGTCGGGGATC
1 AACCCACGAAACGGGCGTGCGGGCGCTGAGCCGTC-GAAGAGGCACAATGCGCAAGCCGGGGATC
* * * * * * *
25713298 GACTCGAT-CCTACTCTACGTGCTGTCGGTCCTGCTACCTCAACCCTCGGTCCAACTGGGGCTTC
65 GACCCGGTCCCT-CTCTGCGTGCTGTCGGTCCTGCTACCACAACCCTCGATCCGACTGGGGCTTA
25713362 GACATGGAATAAGCTCCCTATGCCTAAGCC
129 GACATGGAATAAGCTCCCTATGCCTAAGCC
*
25713392 AACCCATGAAACGGGCGTGCGGG
1 AACCCACGAAACGGGCGTGCGGG
25713415 AACTCAGCTA
Statistics
Matches: 262, Mismatches: 68, Indels: 22
0.74 0.19 0.06
Matches are distributed among these distances:
158 37 0.14
159 191 0.73
160 34 0.13
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
AACCCACGAAACGGGCGTGCGGGCGCTGAGCCGTCGAAGAGGCACAATGCGCAAGCCGGGGATCG
ACCCGGTCCCTCTCTGCGTGCTGTCGGTCCTGCTACCACAACCCTCGATCCGACTGGGGCTTAGA
CATGGAATAAGCTCCCTATGCCTAAGCC
Found at i:25713343 original size:318 final size:317
Alignment explanation
Indices: 25712740--25713540 Score: 827
Period size: 318 Copynumber: 2.5 Consensus size: 317
25712730 AAGGAATGGA
* ** ** * *
25712740 CTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGTACTCAGTCGATCGGAGAGGTAGAA
1 CTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCACTCAGTCGATCGGAGAGGCAGAA
* * * * *** *
25712805 TGCACAAGTCGGGGGTCAACCCGGTCCCCCCTGCATGCTGTTGATCCTACTGCTGTAACCCTCGG
66 TGCACAAGCCGGGGATCAACCCAGTCCCCCCTGCATGCTGTCGATCCTACTGCCACAACCCTCGA
* * * * * * * *
25712870 TCTGATTTGATCTTAGACTGGGAATGAACTTCGTATCCGTAAGTGAACCCATGAAATGAGCGTGC
131 TCCGATCTGATCTTAGACTGGGAATAAACTCCGTATCCATAAGTCAACCCACGAAATGAGCGTAC
* * * * * *
25712935 GGGCGCTGAGCCTGTCGAAGAGGCATAATGCGCAAGCCTGGGATCGGCCCGGTCCCTCTCGGCGT
196 GGGCGCTGAGCCTGACGAAGAGGCACAATGCGCAAGCCGGGGATCGACCCGATCCCTCTCGACGT
** * *
25713000 GCTGTCGGTCCCGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACGTAGAATGAG
261 GCTGTCGGTCCCGCTACCACAACCCTCGATCCAACTGGGGCTTAGACATAGAATAAG
** * *
25713057 CTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCGCTCAGTCGATTGGAGAGGCAGAA
1 CTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCACTCAGTCGATCGGAGAGGCAGAA
* * * * **
25713122 TGCTCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTTCTGTCGATCCTGTTGCCACAACCCTCGA
66 TGCACAAGCCGGGGATCAACCCAGTCCCCCCTGCATGCTGTCGATCCTACTGCCACAACCCTCG-
* * *
25713187 ATCCGATCTGATCTTAGATTGGGAATAAACTCCGTATCCATAAGTCAACCCACGAAATGGGTGTA
130 ATCCGATCTGATCTTAGACTGGGAATAAACTCCGTATCCATAAGTCAACCCACGAAATGAGCGTA
* * * * *
25713252 CGGGTGCTGAGCC-GACTGAAGATGCACAATGCGCAAGTCGGGGATCGACTCGAT-CCTACTCTA
195 CGGGCGCTGAGCCTGAC-GAAGAGGCACAATGCGCAAGCCGGGGATCGACCCGATCCCT-CTCGA
* * * * *
25713315 CGTGCTGTCGGTCCTGCTACCTCAACCCTCGGTCCAACTGGGGCTTCGACATGGAATAAG
258 CGTGCTGTCGGTCCCGCTACCACAACCCTCGATCCAACTGGGGCTTAGACATAGAATAAG
* * * * * * *
25713375 CTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGAACTCAG-CTAGCCAGAAAGGTAGA
1 CTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCACTCAGTCGA-TCGGAGAGGCAGA
* * * * ** * * ** **
25713439 ATGCATAAACCGAGGATCGACCTGGTCCCTCCTGCATGCTGTCGATCCTGCTATCGTAACCCTCG
65 ATGCACAAGCCGGGGATCAACCCAGTCCCCCCTGCATGCTGTCGATCCTACTGCCACAACCCTCG
* * *
25713504 TTCCGATCCGATCTTAGATTGGGAA-AGAACTCCGTAT
130 ATCCGATCTGATCTTAGACTGGGAATA-AACTCCGTAT
25713541 GCTTAGACTG
Statistics
Matches: 396, Mismatches: 83, Indels: 10
0.81 0.17 0.02
Matches are distributed among these distances:
316 1 0.00
317 145 0.37
318 250 0.63
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (317 bp):
CTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCACTCAGTCGATCGGAGAGGCAGAA
TGCACAAGCCGGGGATCAACCCAGTCCCCCCTGCATGCTGTCGATCCTACTGCCACAACCCTCGA
TCCGATCTGATCTTAGACTGGGAATAAACTCCGTATCCATAAGTCAACCCACGAAATGAGCGTAC
GGGCGCTGAGCCTGACGAAGAGGCACAATGCGCAAGCCGGGGATCGACCCGATCCCTCTCGACGT
GCTGTCGGTCCCGCTACCACAACCCTCGATCCAACTGGGGCTTAGACATAGAATAAG
Found at i:25713545 original size:26 final size:26
Alignment explanation
Indices: 25713516--25713568 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25713506 CCGATCCGAT
*
25713516 CTTAGATTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* * *
25713542 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
25713568 C
1 C
25713569 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:25714807 original size:159 final size:155
Alignment explanation
Indices: 25714458--25714823 Score: 387
Period size: 155 Copynumber: 2.3 Consensus size: 155
25714448 GCTTTGACAT
** * * * *
25714458 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGCACTCAGCCGACCGAAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAA
* * * * *
25714523 AGGTAGAATGCGCAAGCTGGGGATCGACCAGGTCCCCCCTACTTGTCGATCCTGCTGCCACAACC
66 AGGAAGAATGCGCAAGCCGGGGATCGACCAGATCCCCCCTACTTGTCGATCCCGCTACCACAACC
*
25714588 CTTGGTCCGGTCTGATCTTAGACTG
131 CTTGGTCCGGTCTGAGCTTAGACTG
* * * * * *
25714613 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGTTGAGCCGACCGAAA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAA
* * *
25714678 AGGAATAATGCGCAAGCCGGGGATCGGCCCA-ATCCCCCTCTACGTGCTGTCGGTCCCGCTACCA
66 AGGAAGAATGCGCAAGCCGGGGATC-GACCAGATCCCCC-CTAC-T--TGTCGATCCCGCTACCA
*
25714742 CAACCCTTGGTCCGG-CTGGGGCTTAGACAT-
126 CAACCCTTGGTCCGGTCT-GAGCTTAGAC-TG
* ** * * * *
25714772 GGAGTGTGCTCCCTATGCCTATGCCAACCCTCGAAATGGGCGTGCGGGCGCT
1 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT
25714824 TAATCGATCA
Statistics
Matches: 172, Mismatches: 32, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
155 83 0.48
156 8 0.05
157 1 0.01
158 2 0.01
159 77 0.45
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (155 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAA
AGGAAGAATGCGCAAGCCGGGGATCGACCAGATCCCCCCTACTTGTCGATCCCGCTACCACAACC
CTTGGTCCGGTCTGAGCTTAGACTG
Found at i:25714957 original size:26 final size:26
Alignment explanation
Indices: 25714921--25714973 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25714911 CTGATTCGAT
25714921 CTTAGACTGGGAATGAACAT-CGTATG
1 CTTAGACTGGGAATGAAC-TCCGTATG
*
25714947 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25714973 C
1 C
25714974 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25717125 original size:159 final size:157
Alignment explanation
Indices: 25716709--25717453 Score: 522
Period size: 159 Copynumber: 4.7 Consensus size: 157
25716699 TCCAGCTGGC
* * * * * *
25716709 GCTTAGACGTGGAATGTACTCCGTATGCCTAAGCTAAACCACGAAATGAGTGTGCGGGCGC-CTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTC-A
* * * ** * * * * * * *
25716773 GTCGGCCGGAGAGAAAGAAGGCGCAAGCTTGGGA-CCAGCCCGGTCCC-CCCTACGTGCTGTTGA
65 GCCAGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGA-CCCGATCCCTCTCTACGTGCTGTCGG
* * * ** *
25716836 TCCTACTACCGCAACCCTCAATCCGG-TCTGA
129 TCCT-CTGCCACAACCTTTGAT-CGGCTC-GG
* * * * * * * *
25716867 TCTTAGTC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGGGTGTGAGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCA
* * * * *
25716931 GCCAGCTC-AAGAGGC-GTAATGCTCAAGCCGGGGATCGACCCGATCCCTCTCGACGTACTGCCG
65 GCCAGC-CGAAGAGGCAG-AATGCGCAAGCTGGGGATCGACCCGATCCCTCTCTACGTGCTGTCG
25716994 GTCCTACTGCCACAACCTTTGATCTGGCTCGG
128 GTCCT-CTGCCACAACCTTTGATC-GGCTCGG
* * * * *
25717026 GCTTAGACATGGAATGAGCTTCGTATGCCTAAGCCAACCCATGAAACAAGTGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
* * * * *
25717091 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCC-CCCTACGTGCTGTCGATC
66 CCAGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCTCTCTACGTGCTGTCGGTC
* * * * *
25717155 CTGCTGTCGCAACCCTCTGTTCGG-TCTGA
131 CT-CTGCCACAA-CCTTTGATCGGCTC-GG
* * * * * * * *
25717184 TCTTCGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCA
* ** * * * *
25717248 GCCGGTTGAAGAGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCTTCTCTATGTGCTGTCGGT
65 GCCAGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCTCTCTACGTGCTGTCGGT
* * * * *
25717313 CCCTCTACCACAACCTTCGGTCCGACTGGG
130 -CCTCTGCCACAACCTTTGAT-CGGCTCGG
* * * * * * *
25717343 GCTTAGACATGGAATGAGCTCCCTATGCTTAATCCAACCCATGAAACGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
* * *
25717408 CCAGCCGGAGAGGTAGAATGCGTAAG-TCGGGGATCGACCCGATCCC
66 CCAGCCGAAGAGGCAGAATGCGCAAGCT-GGGGATCGACCCGATCCC
25717454 CCTTGCGTGC
Statistics
Matches: 453, Mismatches: 114, Indels: 39
0.75 0.19 0.06
Matches are distributed among these distances:
157 5 0.01
158 202 0.45
159 237 0.52
160 9 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
CCAGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCTCTCTACGTGCTGTCGGTC
CTCTGCCACAACCTTTGATCGGCTCGG
Found at i:25717138 original size:317 final size:316
Alignment explanation
Indices: 25716539--25717528 Score: 934
Period size: 317 Copynumber: 3.1 Consensus size: 316
25716529 ACTCTGTATG
* * * * * ** ** * *
25716539 CTTAGACTGGGCATGAACTCCATAAGCCTAAGTCAACCCACGAAATAAGCATGCGGGCACTCCGC
1 CTTAGTCTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGGGTGCGAGCACTCAGC
* * * *
25716604 CGGC-CGAAGAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGTCGATC
66 CAGCTC-AAGAGGCATAATGCGCAAGCCGGGGATCGACCCGAT--CCCTCT-CG-AC-GT--A--
* * * * *
25716668 CTACTATCGGTCCTACTGCCACAACC-CTCAGTCCAGCTGGCGCTTAGACGTGGAATGTA-CTCC
121 CTGC---CGGTCCTACTGCCACAACCTTTGA-TCCGGCTGG-GCTTAGACATGGAATG-AGCTCC
* * * * * * *
25716731 GTATGCCTAAGCTAAACCACGAAATGAGTGTGCGGGCGC-CTAGTCGGCCGGAGAGAAAGAAGGC
180 GTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTC-AGCCGGCCGGAGAGGAAGAATGC
* * * * * *
25716795 GCAAGCTTGGGA-CCAGCCCGGTCCCCCCTACGTGCTGTTGATCCTACTACCGCAACCCTCAATC
244 GCAAGCTGGGGATCGA-CCCGGTCCCCCCTACGTGCTGTCGATCCTGCTATCGCAACCCTCAATT
25716859 CGGTCTGAT
308 CGGTCTGAT
* * * * **
25716868 CTTAGTCTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGGGTGTGAGTGCTCAGC
1 CTTAGTCTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGGGTGCGAGCACTCAGC
* *
25716933 CAGCTCAAGAGGCGTAATGCTCAAGCCGGGGATCGACCCGATCCCTCTCGACGTACTGCCGGTCC
66 CAGCTCAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCTCTCGACGTACTGCCGGTCC
* *
25716998 TACTGCCACAACCTTTGATCTGGCTCGGGCTTAGACATGGAATGAGCTTCGTATGCCTAAGCCAA
131 TACTGCCACAACCTTTGATCCGGCT-GGGCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAA
* * * *
25717063 CCCATGAAACAAGTGTACGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGA
195 CCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAGAGGAAGAATGCGCAAGCTGGGGATCGA
* **
25717128 CCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCTGTTCGGTCTGAT
260 CCCGGTCCCCCCTACGTGCTGTCGATCCTGCTATCGCAACCCTCAATTCGGTCTGAT
* * * *
25717185 CTTCGAT-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCACTGAG
1 CTTAG-TCTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGGGTGCGAGCACTCAG
* * * * * * * * * *
25717249 CCGGTTGAAGAGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCTTCTCTATGTGCTGTCGGTC
65 CCAGCTCAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCTCTCGACGTACTGCCGGT-
* * * * * * *
25717314 CCT-CTACCACAACCTTCGGTCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCTTAATCC
129 CCTACTGCCACAACCTTTGATCCGGCT-GGGCTTAGACATGGAATGAGCTCCGTATGCCTAAGCC
* * * * * *
25717378 AACCCATGAAACGGGCGTGTGGGCGCTCAGCCAGCCGGAGAGGTAGAATGCGTAAG-TCGGGGAT
193 AACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAGAGGAAGAATGCGCAAGCT-GGGGAT
* * * * * * * *
25717442 CGACCCGATCCCCCTTGCGTGCTGCCGATCCTGCTATCGTAAACCTCGATTTGGTCTGAT
257 CGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTATCGCAACCCTCAATTCGGTCTGAT
* *
25717502 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGTCTGGGAATGAACTCCGTATGC
25717529 TTAGACTGGG
Statistics
Matches: 551, Mismatches: 100, Indels: 32
0.81 0.15 0.05
Matches are distributed among these distances:
316 2 0.00
317 435 0.79
318 11 0.02
320 3 0.01
322 1 0.00
324 2 0.00
325 1 0.00
326 2 0.00
327 6 0.01
329 87 0.16
330 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (316 bp):
CTTAGTCTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGGGTGCGAGCACTCAGC
CAGCTCAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCTCTCGACGTACTGCCGGTCC
TACTGCCACAACCTTTGATCCGGCTGGGCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAAC
CCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAGAGGAAGAATGCGCAAGCTGGGGATCGAC
CCGGTCCCCCCTACGTGCTGTCGATCCTGCTATCGCAACCCTCAATTCGGTCTGAT
Found at i:25717251 original size:158 final size:157
Alignment explanation
Indices: 25716719--25717528 Score: 598
Period size: 158 Copynumber: 5.1 Consensus size: 157
25716709 GCTTAGACGT
* * * * *
25716719 GGAATGTACTCCGTATGCCTAAG-CTAAACCACGAAATGAGTGTGCGGGCGC-CTAGTCGGCCGG
1 GGAATGAACTCCGTATGCCTAAGTC-AACCCATGAAACGAGTGTGCGGGCGCTC-AGCCGGCCGG
** * * * *
25716782 AGAGAAAGAAGGCGCAAGCTTGGGA-CCAGCCCGGTCCCCCCTACGTGCTGTTGATCCTACTACC
64 AGAGGCAGAATGCGCAAGCTGGGGATCGA-CCCGGTCCCCCCTACGTGCTGTCGATCCTACTACC
* * **
25716846 GCAACCCTCAATCCGGTCTGATCTTAGTCTG
128 GCAACCCTC-GTTCGGTCTGATCTTAGAATG
* * * * * * *
25716877 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGGGTGTGAGTGCTCAGCCAGCTC-AA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGC-CGGA
* * * * * * * * *
25716941 GAGGC-GTAATGCTCAAGCCGGGGATCGACCCGATCCCTCTCGACGTACTGCCGGTCCTACTGCC
65 GAGGCAG-AATGCGCAAGCTGGGGATCGACCCGGTCCC-CCCTACGTGCTGTCGATCCTACTACC
* * * * **
25717005 ACAACCTTTGATCTGG-CTCGGGCTTAGACAT-
128 GCAACCCTCGTTC-GGTCT-GATCTTAGA-ATG
* * * * * *
25717036 GGAATGAGCTTCGTATGCCTAAGCCAACCCATGAAACAAGTGTACGGGTGCTCAGCCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAG
* **
25717101 AGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGTCGCA
66 AGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTACTACCGCA
* *
25717166 ACCCTCTGTTCGGTCTGATCTTCGATTG
131 ACCCTC-GTTCGGTCTGATCTTAGAATG
* * * * ** *
25717194 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCACTGAGCCGGTTGAAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAG
* * * * * *
25717259 AGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCTTCTCTATGTGCTGTCGGTCCCT-CTACCA
66 AGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCC-CCCCTACGTGCTGTCGAT-CCTACTACCG
* * * * **
25717323 CAACCTTCGGTCCGACTGGGGCTTAGACAT-
129 CAACCCTCGTTCGGTCT-GATCTTAGA-ATG
* * * * * * *
25717353 GGAATGAGCTCCCTATGCTTAA-TCCAACCCATGAAACGGGCGTGTGGGCGCTCAGCCAGCCGGA
1 GGAATGAACTCCGTATGCCTAAGT-CAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGA
* * * * * * * *
25717417 GAGGTAGAATGCGTAAG-TCGGGGATCGACCCGATCCCCCTTGCGTGCTGCCGATCCTGCTATCG
65 GAGGCAGAATGCGCAAGCT-GGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTACTACCG
* * * *
25717481 TAAACCTCGATTTGGTCTGATCTTAGACTG
129 CAACCCTCG-TTCGGTCTGATCTTAGAATG
*
25717511 GGAATGAACTCCATATGC
1 GGAATGAACTCCGTATGC
25717529 TTAGACTGGG
Statistics
Matches: 498, Mismatches: 131, Indels: 46
0.74 0.19 0.07
Matches are distributed among these distances:
157 6 0.01
158 247 0.50
159 239 0.48
160 6 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAG
AGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTACTACCGCA
ACCCTCGTTCGGTCTGATCTTAGAATG
Found at i:25717538 original size:26 final size:26
Alignment explanation
Indices: 25717502--25717554 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25717492 TTGGTCTGAT
25717502 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25717528 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25717554 C
1 C
25717555 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25717881 original size:26 final size:26
Alignment explanation
Indices: 25717845--25717897 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25717835 CCAATCCGAT
*
25717845 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25717871 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25717897 C
1 C
25717898 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25718963 original size:26 final size:26
Alignment explanation
Indices: 25718934--25718984 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25718924 GGCTCAAAAT
25718934 CTTAGAC-TGGGAAT-AAGCTCTGTATG
1 CTTAGACAT-GGAATGAA-CTCTGTATG
25718960 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCTGTAT
25718985 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:25719488 original size:26 final size:26
Alignment explanation
Indices: 25719459--25719511 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25719449 CCGGTCCGAT
*
25719459 CTTAGACT-GCGAATGAACTCCGTATG
1 CTTAGACTCG-GAATGAACTCCATATG
*
25719485 CTTAGACTCGGGATGAACTCCATATG
1 CTTAGACTCGGAATGAACTCCATATG
25719511 C
1 C
25719512 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCATATG
Found at i:25720801 original size:353 final size:354
Alignment explanation
Indices: 25720155--25720852 Score: 1042
Period size: 353 Copynumber: 2.0 Consensus size: 354
25720145 CGTACGGACA
* * * * * *
25720155 CTCAGCCGACCAGAAAGGTAGGATGCGCAAGTCGGAGATCGAATAGGTGGTAGGTGGGTTCAAGC
1 CTCAGCCGACCAGAAAGGCAAGATGCGCAAGCCGGAGATCGAACAGGTCGTAGGTGGGTGCAAGC
* *
25720220 ACATCTTTATATTTCTGCCATAACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCC
66 ACATCTTCATATTTCTGCCATAACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCC
* * *
25720285 TAAGCCTTCATGCGAAGTTTCGTGGCAAGACAAACCGTTTTCTATTTTTCATGATTTTCGAAACT
131 TAAGCCTTCATGCGAAGTTTCATGGCAAGACAAACCATTTTCTATTTTTCATGATTTTCAAAACT
* * * *
25720350 TTTTACGGTTCGAGATTTTTTAAAATTTTTTTAGATAGAATTTTGTCCTAAAATTTGGTAGAGGT
196 TTTTAAGGTTCGAGATTTTTTAAAATTTTTTTAGAAAGAACTTTGTCCCAAAATTTGGTAGAGGT
*
25720415 GATCCTTGTATTATTTCTGGCATGCACAAAAAAATTCAGCTAAAACCTC-AAGTGGAGAAGATTT
261 GATCCTTGTATTATTTCTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGATTT
25720479 TGTGACCATTTGAAAAAAGTTTGCAGGCG
326 TGTGACCATTTGAAAAAAGTTTGCAGGCG
* * *
25720508 CTCAGCCGACCAGAGAGGCAAGATGCGCAAGCCGGGGATCGAACGGGTCGTAGGTGGGTGCAAGC
1 CTCAGCCGACCAGAAAGGCAAGATGCGCAAGCCGGAGATCGAACAGGTCGTAGGTGGGTGCAAGC
* * **
25720573 ACATCTTCATATTTTTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCC
66 ACATCTTCATATTTCTGCCATAACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCC
* * *
25720638 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCCATTTTCTATTTTTCATGATTTTCAAAACT
131 TAAGCCTTCATGCGAAGTTTCATGGCAAGACAAACCATTTTCTATTTTTCATGATTTTCAAAACT
* **
25720703 TTTTAAGGTTCGGGATTTTTT-AAATTTTTTTAGAAAGCGCTTTGTTCCCAAAA-TTGGTAGAGG
196 TTTTAAGGTTCGAGATTTTTTAAAATTTTTTTAGAAAGAACTTTG-TCCCAAAATTTGGTAGAGG
* * * *
25720766 TGATCCTTGTATTTTTTTTTGGTATGCACAAAAAAATTCATCTAAAAACTCAAAGTGGAGAAGAT
260 TGATCCTTGTA-TTATTTCTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGAT
* *
25720831 TTTGTGATCGTTTGAAAAAAGT
324 TTTGTGACCATTTGAAAAAAGT
25720853 GTCCCCATTT
Statistics
Matches: 307, Mismatches: 35, Indels: 5
0.88 0.10 0.01
Matches are distributed among these distances:
352 40 0.13
353 234 0.76
354 33 0.11
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34
Consensus pattern (354 bp):
CTCAGCCGACCAGAAAGGCAAGATGCGCAAGCCGGAGATCGAACAGGTCGTAGGTGGGTGCAAGC
ACATCTTCATATTTCTGCCATAACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCC
TAAGCCTTCATGCGAAGTTTCATGGCAAGACAAACCATTTTCTATTTTTCATGATTTTCAAAACT
TTTTAAGGTTCGAGATTTTTTAAAATTTTTTTAGAAAGAACTTTGTCCCAAAATTTGGTAGAGGT
GATCCTTGTATTATTTCTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGGAGAAGATTT
TGTGACCATTTGAAAAAAGTTTGCAGGCG
Found at i:25721086 original size:11 final size:11
Alignment explanation
Indices: 25721055--25721087 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
25721045 CGGTTAGGCT
25721055 CTCCGACGATG
1 CTCCGACGATG
25721066 CTCC-AGCGATG
1 CTCCGA-CGATG
25721077 CTCCGACGATG
1 CTCCGACGATG
25721088 GTGCCCCGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 1 0.05
11 18 0.90
12 1 0.05
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:25721662 original size:158 final size:156
Alignment explanation
Indices: 25721183--25721684 Score: 496
Period size: 158 Copynumber: 3.2 Consensus size: 156
25721173 GCTCCGTATG
*
25721183 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * *
25721248 CGGCTAGAGAGGCAGAATGCGCAAGCGGGGGATCGACTCCATCCCCCCCCGCGTGCTGTCGATCA
66 CGACCGGAGAGGCAGAATGAGCAAGCCGGGGATCG-GTCCAT--CCCCCTGCGTGCTGTCGATCC
* *
25721313 TGCTGCCGCAACCCTCGGTCCGGTCTGAC
128 TGCTGCCGCAACCCTCGGTCTGGTCCGAC
* * * *
25721342 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
25721406 CCGACCGAAGAGGCATAATGTGCAAGCCGGGGATCGGGCCACTCCCCTCTGCATGCTGCTTG-TC
65 CCGACCGGAGAGGCAGAATGAGCAAGCCGGGGATCGGTCCA-TCCCC-CTGCGTGCTG-TCGATC
* * * **
25721470 CCGCTGCCACAACCCTCGGTCTGG-CTGGGG
127 CTGCTGCCGCAACCCTCGGTCTGGTC-CGAC
** *
25721500 CTTAGACATGGAAT-AAGCTACC-TACACCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTC
1 CTTAGACATGGAATGAA-CT-CCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCGCTC
* * * *
25721562 AACCGATCGGAGAGGCAGAATGAGTAAGCCGGGGATCGGTCCGATGCCCCCTACGTGCTGTCGAT
63 AGCCGACCGGAGAGGCAGAATGAGCAAGCCGGGGATCGGTCC-AT-CCCCCTGCGTGCTGTCGAT
* * *
25721627 CCTGCTGTCGCAACCCTCGGTTTGGTCCGAT
126 CCTGCTGCCGCAACCCTCGGTCTGGTCCGAC
*
25721658 CTTAGAC-TGGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
25721685 TTAGACTGGG
Statistics
Matches: 276, Mismatches: 51, Indels: 33
0.77 0.14 0.09
Matches are distributed among these distances:
157 12 0.04
158 164 0.59
159 100 0.36
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGAGCAAGCCGGGGATCGGTCCATCCCCCTGCGTGCTGTCGATCCTGC
TGCCGCAACCCTCGGTCTGGTCCGAC
Found at i:25721707 original size:25 final size:26
Alignment explanation
Indices: 25721658--25721709 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
25721648 TTGGTCCGAT
25721658 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
25721684 CTTAGACTGGG-ATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
25721709 C
1 C
25721710 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 2 0.08
25 12 0.48
26 11 0.44
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:25722373 original size:26 final size:26
Alignment explanation
Indices: 25722330--25722379 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
25722320 CGATCTGATC
*
25722330 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATAAACTCCGTATGG
*
25722356 TTAGACT-GGAGATAAACTCTGTAT
1 TTAGACTGGGA-ATAAACTCCGTAT
25722380 CCCTAAGTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 3 0.14
26 18 0.86
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGG
Found at i:25722692 original size:26 final size:26
Alignment explanation
Indices: 25722663--25722715 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25722653 CCGATTCGAT
*
25722663 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
25722689 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
25722715 C
1 C
25722716 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:25723129 original size:158 final size:159
Alignment explanation
Indices: 25722845--25723504 Score: 451
Period size: 159 Copynumber: 4.1 Consensus size: 159
25722835 TACCAGTCCT
** * * * ** *
25722845 GCTACCACAACCCTCGGTCCAACTGGTGCTTAGACGTGGAATGTACTCTGTATGCC-TAATCCAA
1 GCTACCACAACCCTCGGTCCGGCTGGAGCTTAGACATGGAATGAACTCCCTAT-CCATAAGCCAA
* * * ** * * * *
25722909 CCCACGAAACGAGCGTG-CGGGCACTCAACCGACTGGAGAGGTAGAATGCGTAACCCGAGGATCG
65 CCCACGAAACGAGCG-GACAGGCGCTCAGCCGACCAGAGAGGCATAATGCGTAAGCCGGGGATCG
*
25722973 ACCCGATCCCCC-CTGCGTGCTGTCGATCCT
129 ACCCGATCCCCCTCTGCGTGCTGTCGATCCC
* ** * * * * * * *
25723003 GCTGCTGCAACCCTCGGTCCGATCT-GATCTTAGAC-TGGGAATGAACTTCGTTTGCATAAGTCA
1 GCTACCACAACCCTCGGTCCG-GCTGGAGCTTAGACAT-GGAATGAACTCCCTATCCATAAGCCA
* * * * **
25723066 ACCCACGAAACGAGCGTACGGGCGCTGAGCTGGTC-GAAGAGGCATAATGCGTAAGCCGGGGATC
64 ACCCACGAAACGAGCGGACAGGCGCTCAGCCGACCAG-AGAGGCATAATGCGTAAGCCGGGGATC
* * * *
25723130 GGCCCGGTCCCCCTCTGCGTGCCG-CCAGTCCC
128 GACCCGATCCCCCTCTGCGTGCTGTCGA-TCCC
* * *
25723162 GCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATCCCTAAGCCAAC
1 GCTACCACAACCCTCGGTCCGGCTGGAGCTTAGACATGGAATGAACTCCCTATCCATAAGCCAAC
* * * * *
25723227 CCATGAAACGGGCGGGCAGGCGCTCAGCCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCGAC
66 CCACGAAACGAGCGGACAGGCGCTCAGCCGACCAGAGAGGCATAATGCGTAAGCCGGGGATCGAC
*
25723292 CCGATCCCCCTCTGCATGCTGTCGATCCCACTTCCGGTCC
131 CCGATCCCCCTCTGCGTGCTGTCG-----A--T-C---CC
** * * ** * *
25723332 TGCTACCACAACCCTTAGTCCAGCTGGGGCTTAGACATGGGGTGTACTCCGTATGCC-TAAGCCA
1 -GCTACCACAACCCTCGGTCCGGCTGGAGCTTAGACATGGAATGAACTCCCTAT-CCATAAGCCA
* * * * * **
25723396 ACCCACGAAACGAGCGTG-CGGGCACTCAACCGGCCAGAGAGGCAGAATGCACAAGCCGGGGATC
64 ACCCACGAAACGAGCG-GACAGGCGCTCAGCCGACCAGAGAGGCATAATGCGTAAGCCGGGGATC
* * *
25723460 -AGTCCGATCCCCCT-TGCGTGCTGCCGATCCT
128 GA-CCCGATCCCCCTCTGCGTGCTGTCGATCCC
* *
25723491 ACTACCGCAACCCT
1 GCTACCACAACCCT
25723505 TGGTTTGGTC
Statistics
Matches: 393, Mismatches: 84, Indels: 50
0.75 0.16 0.09
Matches are distributed among these distances:
157 3 0.01
158 118 0.30
159 131 0.33
160 3 0.01
162 1 0.00
163 1 0.00
165 2 0.01
166 1 0.00
167 1 0.00
170 13 0.03
171 116 0.30
172 3 0.01
ACGTcount: A:0.22, C:0.33, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTACCACAACCCTCGGTCCGGCTGGAGCTTAGACATGGAATGAACTCCCTATCCATAAGCCAAC
CCACGAAACGAGCGGACAGGCGCTCAGCCGACCAGAGAGGCATAATGCGTAAGCCGGGGATCGAC
CCGATCCCCCTCTGCGTGCTGTCGATCCC
Found at i:25723469 original size:171 final size:170
Alignment explanation
Indices: 25723157--25723489 Score: 436
Period size: 171 Copynumber: 2.0 Consensus size: 170
25723147 CGTGCCGCCA
* *
25723157 GTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATCCCTAAG
1 GTCCCGCTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAGCTCCCTATCCCTAAG
* * * * * *
25723222 CCAACCCATGAAACGGGCGGGCAGGCGCTCAGCCGACCAGAGAGGCATAATGCGCAAGCCAGGGA
66 CCAACCCACGAAACGAGCGGGCAGGCACTCAACCGACCAGAGAGGCAGAATGCACAAGCCAGGGA
*
25723287 TCGACCCGATCCCCCTCTGCATGCTGTCGATCCCACTTCCG
131 TCGACCCGATCCCCCT-TGCATGCTGCCGATCCCACTTCCG
* * ** * *
25723328 GTCCTGCTACCACAACCCTTAGTCCAGCTGGGGCTTAGACATGGGGTGTA-CTCCGTATGCCTAA
1 GTCCCGCTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATG-AGCTCCCTATCCCTAA
* * * *
25723392 GCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGAGGCAGAATGCACAAGCCGGGG
65 GCCAACCCACGAAACGAGCGGGCAGGCACTCAACCGACCAGAGAGGCAGAATGCACAAGCCAGGG
* *
25723457 ATC-AGTCCGATCCCCCTTGCGTGCTGCCGATCC
130 ATCGA-CCCGATCCCCCTTGCATGCTGCCGATCC
25723490 TACTACCGCA
Statistics
Matches: 139, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
170 15 0.11
171 123 0.88
172 1 0.01
ACGTcount: A:0.22, C:0.35, G:0.27, T:0.16
Consensus pattern (170 bp):
GTCCCGCTACCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAGCTCCCTATCCCTAAG
CCAACCCACGAAACGAGCGGGCAGGCACTCAACCGACCAGAGAGGCAGAATGCACAAGCCAGGGA
TCGACCCGATCCCCCTTGCATGCTGCCGATCCCACTTCCG
Found at i:25723548 original size:26 final size:26
Alignment explanation
Indices: 25723519--25723571 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25723509 TTGGTCCGAT
*
25723519 CTTAGACTCGGAATGAACTTTGTATG
1 CTTAGACTCGGAATGAACTCTGTATG
* *
25723545 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTCGGAATGAACTCTGTATG
25723571 C
1 C
25723572 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCTGTATG
Found at i:25724695 original size:158 final size:159
Alignment explanation
Indices: 25724306--25724770 Score: 420
Period size: 157 Copynumber: 2.9 Consensus size: 159
25724296 TCTGTTTGCC
** * * * * *
25724306 TAAGCCAACCCACAAAACGAGCGTGCGGGCGTTCAACTGATCGGAGAGGCAGAATGCGCAAGCTG
1 TAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGAAAGCCG
* * *** *** **
25724371 GGGATCGACCCGGTCCCCCT-TGCTTGCTGTTGATCCTACTGTTGCAACCCTCAATCTGGTCTGA
66 GGGATCGGCCCGGTCCCCCTCTGCATGCTGCCAATCCTACTGCCACAACCCTCAATCCAGTCTGA
** *
25724435 TTTTAGACTGGGAATGAACTCCGTATGCA
131 GCTTAGACTGGGAATGAACTCCCTATGCA
* * * * * * ** * * * *
25724464 TAAGTCAA-CCATGAAATGAGCATGCAGGAGCTGAGCCGGCCGAAGAGGCATAATGTGAAAGTCG
1 TAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGAAAGCCG
* * *
25724528 GGGATCGGCCCAGTCCCCCTCTGCATGCTGCCAATCC-GCTGCCACAACCCTCGATCCAG-CTAG
66 GGGATCGGCCCGGTCCCCCTCTGCATGCTGCCAATCCTACTGCCACAACCCTCAATCCAGTCT-G
* * * * *
25724591 GGCTTAGCCTTGGAATGAGCTCCCTATGCT
130 AGCTTAGACTGGGAATGAACTCCCTATGCA
* * *
25724621 TAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGTAAGCCA
1 TAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGAAAGCCG
* * *** *
25724686 GGGATCGGCCCGGTCCCCC-CTGCGTG-TGGCCGATCCTACTGTTGCAACCCTCAGTCCAGTCTG
66 GGGATCGGCCCGGTCCCCCTCTGCATGCT-GCCAATCCTACTGCCACAACCCTCAATCCAGTCTG
*
25724749 ATCTTAGACTGGGAATGAACTC
130 AGCTTAGACTGGGAATGAACTC
25724771 TGTAAGCTTA
Statistics
Matches: 232, Mismatches: 69, Indels: 12
0.74 0.22 0.04
Matches are distributed among these distances:
156 3 0.01
157 114 0.49
158 113 0.49
159 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
TAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGAAAGCCG
GGGATCGGCCCGGTCCCCCTCTGCATGCTGCCAATCCTACTGCCACAACCCTCAATCCAGTCTGA
GCTTAGACTGGGAATGAACTCCCTATGCA
Found at i:25724780 original size:158 final size:158
Alignment explanation
Indices: 25724278--25724780 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 158
25724268 GCTCCGTATG
* * * * ** * *
25724278 CTTAGAC-GTGGAATGATCTCTGTTTGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGTTCAA
1 CTTAGACTG-GGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * **
25724342 CTGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCTTGCTTGCTGTTGATCC
65 CCGATCGGAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGCCGATCC
* **
25724407 TACTGTTGCAACCCTCAATCTGGTCTGAT
130 TACTGTTGCAACCCTCAGTCCAGTCTGAT
* * * * * * * *
25724436 TTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA-CCATGAAATGAGCATGCAGGAGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * *
25724500 CGGCCGAAGAGGCATAATGTGAAAGTCGGGGATCGGCCCAGTCCCCCTCTGCATGCTGCCAATCC
66 CGATCGGAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGGTCCCCC-CTGCATGCTGCCGATCC
* *** **
25724565 -GCTGCCACAACCCTC-GATCCAG-CTAGGG
130 TACTGTTGCAACCCTCAG-TCCAGTCT-GAT
* * * *
25724593 CTTAGCCTTGGAATGAGCTCCCTATGCTTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * *
25724658 CGATCGGAGAGGTAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTG-TGGCCGATCC
66 CGATCGGAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCT-GCCGATCC
25724722 TACTGTTGCAACCCTCAGTCCAGTCTGAT
130 TACTGTTGCAACCCTCAGTCCAGTCTGAT
* *
25724751 CTTAGACTGGGAATGAACTCTGTAAGCTTA
1 CTTAGACTGGGAATGAACTCCGTATGCTTA
25724781 GACTGGGGAT
Statistics
Matches: 260, Mismatches: 76, Indels: 18
0.73 0.21 0.05
Matches are distributed among these distances:
156 3 0.01
157 112 0.43
158 141 0.54
159 4 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGAAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGCCGATCCT
ACTGTTGCAACCCTCAGTCCAGTCTGAT
Found at i:25725318 original size:26 final size:26
Alignment explanation
Indices: 25725289--25725341 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25725279 CCAATCCGAT
25725289 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25725315 CTTAGATTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25725341 C
1 C
25725342 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25726366 original size:21 final size:21
Alignment explanation
Indices: 25726342--25726383 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
25726332 GCGTGCTGTA
25726342 GGTCCCGCTGCCACAACCCTC
1 GGTCCCGCTGCCACAACCCTC
**
25726363 GGTCTGGCTGCCACAACCCTC
1 GGTCCCGCTGCCACAACCCTC
25726384 AGTCTAGCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.48, G:0.21, T:0.17
Consensus pattern (21 bp):
GGTCCCGCTGCCACAACCCTC
Found at i:25726366 original size:159 final size:159
Alignment explanation
Indices: 25726058--25726366 Score: 370
Period size: 159 Copynumber: 1.9 Consensus size: 159
25726048 GCTCTGTATG
* * * *
25726058 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGAGGGCGCTCAGC
1 CTTAGACAAGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGAGGGCACTCAGC
* * * * *
25726123 CGGTCAAAGAGGTAGAATGCACAAGCCGAGGATTGACCCGGTCCCCCCCTGCGTGCTGTTGATCC
66 CGGCCAAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCCTGCGTGCTGTAGATCC
* * * *
25726188 TGCTGTCGCATCCCCCGGTCCAGCCTGAT
131 CGCTGCCACAACCCCCGGTCCAGCCTGAT
** * *
25726217 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGT-ACGGGCACTGAG
1 CTTAGACAAGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGA-GGGCACTCAG
* * * * * *
25726281 CGGGCCGAAGAGGCATAATGCGCAAGCC-AGGGATCGACCCGATCCCCCTCTGCGTGCTGTAGGT
65 CCGGCCAAAGAGGCAGAATGCACAAGCCGA-GGATCGACCCGATCCCCCCCTGCGTGCTGTAGAT
*
25726345 CCCGCTGCCACAACCCTCGGTC
129 CCCGCTGCCACAACCCCCGGTC
25726367 TGGCTGCCAC
Statistics
Matches: 124, Mismatches: 24, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
158 2 0.02
159 122 0.98
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
CTTAGACAAGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGAGGGCACTCAGC
CGGCCAAAGAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCCTGCGTGCTGTAGATCC
CGCTGCCACAACCCCCGGTCCAGCCTGAT
Found at i:25726388 original size:21 final size:21
Alignment explanation
Indices: 25726348--25726393 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
25726338 TGTAGGTCCC
* *
25726348 GCTGCCACAACCCTCGGTCTG
1 GCTGCCACAACCCTCAGTCTA
25726369 GCTGCCACAACCCTCAGTCTA
1 GCTGCCACAACCCTCAGTCTA
25726390 GCTG
1 GCTG
25726394 GGGCTTAGAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.17, C:0.41, G:0.22, T:0.20
Consensus pattern (21 bp):
GCTGCCACAACCCTCAGTCTA
Found at i:25726757 original size:26 final size:26
Alignment explanation
Indices: 25726728--25726780 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25726718 CCGGTCTGAT
25726728 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25726754 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25726780 C
1 C
25726781 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25727037 original size:368 final size:369
Alignment explanation
Indices: 25726468--25727167 Score: 998
Period size: 368 Copynumber: 1.9 Consensus size: 369
25726458 CAGCTGGCCG
* * * *
25726468 GAGAGGCATAATGCACAAGCCGGGGATCAGCCTGATCCCCCTCTACGTGCTGTAGATCCCGCTGC
1 GAGAGGCATAATGCACAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGCAGATCCCGCTAC
* *
25726533 CGGTCCTGCTACCATAACCTTCGGTCCGGCTAGGGGGCTTAGACATGGAATGTACTCCGTATGCC
66 CAGTCCTGCTACCATAACCTTCGGTCCGACTA-GGGGCTTAGACATGGAATGTACTCCGTATGCC
* * * * *
25726598 TAAGCCAACCCATGTAACCAGCATGCGGGTGCTCAGTCAGCTAAAGAGGTAGAATGCGCAAGCAG
130 TAAGCCAACCCACGAAACCAGCATGCGGGCGCTCAGCCAGCTAAAGAGGCAGAATGCGCAAGCAG
* * *
25726663 GGGATCGGCCCGATCCCCCTTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAATCCGG-TCTGA
195 GGGATCGGCCCGATCCCCCTTACGTGCTGCCGATCCTACTACAGCAACCCTCAATCCGGTTC-GA
*
25726727 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT-CTGTATGCCTAAGTCAGC
259 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCT-TATGCCTAAGTCAAC
*
25726791 CCACGAAACGAGGGTGCGGGTGCTCAGCCAGCCGGAGAGGTCGACCA
323 CCACAAAACGAGGGTGCGGGTGCTCAGCCAGCCGGAGAGGTCGACCA
* * * * *
25726838 GAGAGGCATAATGCGCAAGTCGGGGATCAACCCGATCCCTCTCTGCGTGCTGCCGATCCCGCTAC
1 GAGAGGCATAATGCACAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGCAGATCCCGCTAC
* * *
25726903 CAGTCCTGCTGCCACTACCCTT-GGTCTGACTA-GGGCTTAGACATGGAATGTACTCCGTATGCC
66 CAGTCCTGCTACCA-TAACCTTCGGTCCGACTAGGGGCTTAGACATGGAATGTACTCCGTATGCC
* * **
25726966 TAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-TCGGAGAGGCAGAATGCGCAAGCT
130 TAAGCCAACCCACGAAACCAGCATGCGGGCGCTCAGCCAGCT-AAAGAGGCAGAATGCGCAAGC-
* * * *
25727030 A-GGGATCGGCCCGGTCCCCCTTACGTGCTGTCGATCCTACTACAGTAACCCTCGATCCGGTTCG
193 AGGGGATCGGCCCGATCCCCCTTACGTGCTGCCGATCCTACTACAGCAACCCTCAATCCGGTTCG
* *
25727094 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGGATGAACTCCTTATGCCTAAGTCAAC
258 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCTTATGCCTAAGTCAAC
25727159 CCACAAAAC
323 CCACAAAAC
25727168 AAGCGTACGG
Statistics
Matches: 291, Mismatches: 34, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
367 1 0.00
368 203 0.70
369 5 0.02
370 76 0.26
371 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (369 bp):
GAGAGGCATAATGCACAAGCCGGGGATCAACCCGATCCCCCTCTACGTGCTGCAGATCCCGCTAC
CAGTCCTGCTACCATAACCTTCGGTCCGACTAGGGGCTTAGACATGGAATGTACTCCGTATGCCT
AAGCCAACCCACGAAACCAGCATGCGGGCGCTCAGCCAGCTAAAGAGGCAGAATGCGCAAGCAGG
GGATCGGCCCGATCCCCCTTACGTGCTGCCGATCCTACTACAGCAACCCTCAATCCGGTTCGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCTTATGCCTAAGTCAACCCA
CAAAACGAGGGTGCGGGTGCTCAGCCAGCCGGAGAGGTCGACCA
Found at i:25727147 original size:26 final size:26
Alignment explanation
Indices: 25727096--25727148 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25727086 CCGGTTCGAT
*
25727096 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
25727122 CTTAGATTGGGGATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25727148 C
1 C
25727149 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25728292 original size:170 final size:170
Alignment explanation
Indices: 25728004--25728309 Score: 366
Period size: 170 Copynumber: 1.8 Consensus size: 170
25727994 CCGGTCCAAT
* ** * *
25728004 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGTGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAAC
* * *
25728069 CGACCGAAGAGGATAATGCACAAGCCAGGGATTCGCCCGATCCCCCTCTGCGTGCTGTCGATCCT
66 CGACCGAAGAGGAGAATGCACAAGCCAGGGATTCGCCCGATCCCCCTCTGCGTGCTGCCGATCAT
25728134 GCTGTCGGTCCTGCTGCCACAACCCTCAGTCCAGCTGGGG
131 GCTGTCGGTCCTGCTGCCACAACCCTCAGTCCAGCTGGGG
* * * * * *
25728174 CTTAGACGT-GGAATGTACTCCGTCTGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCACTCAA
1 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAA
* * * * * * * *
25728238 TCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGA-TCGACCTGATCCTCC-CTGCGTGTTGCCGAT
65 CCGACCGAAGAGG-AGAATGCACAAGCCAGGGATTCG-CCCGATCCCCCTCTGCGTGCTGCCGAT
25728301 CATGCTGTC
128 CATGCTGTC
25728310 ACAACCCTCG
Statistics
Matches: 111, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
170 85 0.77
171 26 0.23
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (170 bp):
CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAAC
CGACCGAAGAGGAGAATGCACAAGCCAGGGATTCGCCCGATCCCCCTCTGCGTGCTGCCGATCAT
GCTGTCGGTCCTGCTGCCACAACCCTCAGTCCAGCTGGGG
Found at i:25728362 original size:26 final size:26
Alignment explanation
Indices: 25728333--25728383 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
25728323 CGATCCGATC
25728333 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
25728359 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
25728384 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:25728751 original size:26 final size:26
Alignment explanation
Indices: 25728700--25728752 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25728690 TCGGTCCGAT
**
25728700 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25728726 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25728752 C
1 C
25728753 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25729648 original size:26 final size:26
Alignment explanation
Indices: 25729607--25729659 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25729597 TCGATCTGAT
25729607 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
** *
25729633 CTTAGACTGGGGATGAACTCGGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
25729659 C
1 C
25729660 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:25730001 original size:26 final size:26
Alignment explanation
Indices: 25729972--25730021 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
25729962 CTGATCCGAC
25729972 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
25729998 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGAAATGAACTCCGTA
25730022 CGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:25730356 original size:26 final size:26
Alignment explanation
Indices: 25730327--25730379 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25730317 CCTATCCGAT
*
25730327 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25730353 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25730379 C
1 C
25730380 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25730391 original size:355 final size:355
Alignment explanation
Indices: 25729448--25730432 Score: 1074
Period size: 365 Copynumber: 2.7 Consensus size: 355
25729438 AGCTTCATAT
* * * * *
25729448 GCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACCAAACAAACATGCGGGCGCTCAG
1 GCTTAGA-GTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG-TCAG
* *
25729513 CCGATCGGAGAGTCAGAATGTGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTGCTGCTGATCC
64 TCGATCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCC--GTCCCCCCTGCGTGCTGC-GATCC
* * * * *
25729578 TGCTGTCACAACCCTCGATTCGATCTGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGG
126 TGCAGCCGCAACCCTCGA-TCTATCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGG
* * * * *
25729643 GGATGAACTCGGTATGCCTAAGTCAACCCACAAAACGAACGTGCGGGCACTCAG-CTAGTCGGAG
190 GGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACTCGGAG
** * * ** * * *
25729707 AGGTTGGCTGAAGAGGCATAATGTGCAAGTCGAGGATCAGCCCGGTCCCCCTCTATGTGCTGCCG
255 AGGCAGCCAGAAGAGGCATAATGCACAAGTCGAGGATCAGCCCGATCCCCCTCTACGTGATGCCG
* * *
25729772 ATCTCGCTGCCGGTCCTATTGCCACAACCCTTGCTTCAGCTGGG
320 ATCT--CT--C-G-CC--TTGCCACAACACTCGCTCCAGCTGGG
* *
25729816 GCTTAGCGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGTGC-TCAAT
1 GCTTAGAGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-GCGTCAGT
* * * * * * * *
25729880 CGATCGGAAAGGCAGAATGTGTAAGCCGGGGATCGACCGATCCCCTCTACATGCTACCGATCCTG
65 CGATCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCG-TCCCCCCTGCGTGCT-GCGATCCTG
*
25729945 CTA-CCGCAACCCTCGATCTGATCCGACCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGG
128 C-AGCCGCAACCCTCGATCT-ATCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGG
* * * *
25730009 GATGAACTCCGTACGCCTAAGTCAACCCACAAAACGAGCGTTCAGGCGTTCAGCCGACT-GGAGA
191 GATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACTCGGAGA
* *
25730073 GGCCAGCCAG-AGAGGCATAATGCACAAG-CTGAGGATCAGCCCGATCCTCCTCTGCGTGATGCC
256 GG-CAGCCAGAAGAGGCATAATGCACAAGTC-GAGGATCAGCCCGATCCCCCTCTACGTGATGCC
* * *
25730136 GATCT-T-G-C-TGCCACAATACTCGGTCCGGCTGGG
319 GATCTCTCGCCTTGCCACAACACTCGCTCCAGCTGGG
* * *
25730169 GCTTAGAGTGGAAGGTACTCTGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGTTCAGT
1 GCTTAGAGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG-TCAGT
** * * * *
25730234 CGGCCGGAGAGGCAAAATGCGCAAGCCATGGATCGGCTCAGTCCCCCCTGCGTGCTGTCGATCTT
65 CGATCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGC-C-GTCCCCCCTGCGTGCTG-CGATCCT
* *
25730299 GCAGCCGCAACCCTCGATCCTATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGG
127 GCAGCCGCAACCCTCGAT-CTATCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGG
* ** * *
25730364 GATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCTAC-CAGAGA
191 GATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACTCGGAGA
25730428 GGCAG
256 GGCAG
25730433 GATGCGCAAG
Statistics
Matches: 521, Mismatches: 80, Indels: 46
0.81 0.12 0.07
Matches are distributed among these distances:
352 2 0.00
353 71 0.14
354 36 0.07
355 132 0.25
356 4 0.01
358 1 0.00
362 1 0.00
364 4 0.01
365 175 0.34
366 43 0.08
367 44 0.08
368 8 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (355 bp):
GCTTAGAGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTCAGTC
GATCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCGTCCCCCCTGCGTGCTGCGATCCTGCAG
CCGCAACCCTCGATCTATCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGGATGA
ACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACTCGGAGAGGCAG
CCAGAAGAGGCATAATGCACAAGTCGAGGATCAGCCCGATCCCCCTCTACGTGATGCCGATCTCT
CGCCTTGCCACAACACTCGCTCCAGCTGGG
Found at i:25731914 original size:26 final size:26
Alignment explanation
Indices: 25731870--25731922 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
25731860 CCGATCCGAT
* *
25731870 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACGGGGAATAAACTTC-GTATG
*
25731896 CTTAGACGGGGGATAAACTTCGTATG
1 CTTAGACGGGGAATAAACTTCGTATG
25731922 C
1 C
25731923 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACGGGGAATAAACTTCGTATG
Found at i:25733128 original size:158 final size:158
Alignment explanation
Indices: 25732627--25733128 Score: 439
Period size: 158 Copynumber: 3.2 Consensus size: 158
25732617 GCTCCGTATG
* *
25732627 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTCA-G
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGTGCTCAGG
* * * * ** * *
25732691 CTGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATTAAC-CTGATCCCCCCCTGTGTGCTGTCGAT
66 C-GACCGGAAAGGAAGAATGCGCAAGCCGGGGATTGGCTC-GAT-CCCCCCTGCGTGCTGTCAAT
* * *
25732755 CCTACAGCCACAACCCTCGGT-CTGGTCTGAT
128 CCTGCTGCCACAACCCTCGATCCT-GTCTGAT
* * * * *** *
25732786 CTTAGAC-TGGAATGAACTCCGTATGCATAAGTCAACCCA-CAAAACGAGCATGCGGGCATTGAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAA-GAGCGTGCGGGTGCTCAG
* * * * * * * * * *
25732849 CCAATC-GAAGAGGCATAATGCGCAAGCCGGGGATTGG-TCCAGTCCCCCTATACGTGCTGCCAG
65 GCGACCGGAA-AGGAAGAATGCGCAAGCCGGGGATTGGCTCGA-TCCCCC-CTGCGTGCTGTCAA
* * * **
25732912 TCCCGCTGCCACAACCCTTGATCCAG-CTAGGG
127 TCCTGCTGCCACAACCCTCGATCCTGTCT-GAT
* * *
25732944 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCTATGAAATAG-GCGTGCGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-AGAGCGTGCGGGTGCTCAG
** *
25733008 GCGACCGGAAAGGAAGAATGCATAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCAATCC
65 GCGACCGGAAAGGAAGAATGCGCAAGCCGGGGATTGGCTCGATCCCCCCTGCGTGCTGTCAATCC
*
25733073 TGCTGCCACATCCCTCGATCCTGTCTGAT
130 TGCTGCCACAACCCTCGATCCTGTCTGAT
*
25733102 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
25733129 TTAGACTGGG
Statistics
Matches: 261, Mismatches: 67, Indels: 31
0.73 0.19 0.09
Matches are distributed among these distances:
157 14 0.05
158 156 0.60
159 80 0.31
160 10 0.04
161 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAAGAGCGTGCGGGTGCTCAGG
CGACCGGAAAGGAAGAATGCGCAAGCCGGGGATTGGCTCGATCCCCCCTGCGTGCTGTCAATCCT
GCTGCCACAACCCTCGATCCTGTCTGAT
Found at i:25733138 original size:26 final size:26
Alignment explanation
Indices: 25733102--25733154 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25733092 CCTGTCTGAT
25733102 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25733128 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25733154 C
1 C
25733155 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25733315 original size:26 final size:26
Alignment explanation
Indices: 25733286--25733338 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25733276 CCGGTCTGAT
*
25733286 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
25733312 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25733338 C
1 C
25733339 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25733388 original size:184 final size:184
Alignment explanation
Indices: 25733031--25733375 Score: 548
Period size: 184 Copynumber: 1.9 Consensus size: 184
25733021 AAGAATGCAT
* * * * * *
25733031 AAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGTCAATCCTGCTGCCACATCCCTCGATCCTG
1 AAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCAATCCTACTACCACAACCCTCAATCCGG
* *
25733096 TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGTATGAACTCCGTATGCCTAAGT
66 TCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
* *
25733161 CAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCTGGAGAGGCAGAAAGTGC
131 CAACCCACGAAACGACCGTACGGGCACTCAGCCGGCTGGAGAGGCAGAAAGTGC
* *
25733215 AAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTGTCGATCCTACTACCACAACCCTCAATCCGG
1 AAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCAATCCTACTACCACAACCCTCAATCCGG
**
25733280 TCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
66 TCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
25733345 CAACCCACGAAAC-ATCCGTACGGGCACTCAG
131 CAACCCACGAAACGA-CCGTACGGGCACTCAG
25733376 TCGATCGGAG
Statistics
Matches: 146, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
183 1 0.01
184 145 0.99
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.21
Consensus pattern (184 bp):
AAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCAATCCTACTACCACAACCCTCAATCCGG
TCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGACCGTACGGGCACTCAGCCGGCTGGAGAGGCAGAAAGTGC
Found at i:25734399 original size:158 final size:157
Alignment explanation
Indices: 25733899--25734399 Score: 408
Period size: 158 Copynumber: 3.2 Consensus size: 157
25733889 GCTCCGTATG
* *
25733899 CTTAGAC-ATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAA-GGAGCGTGCGGGCACTCA
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGG-GCGTGCGGGCGCTCA
* * * * * * **
25733962 ATCGGCCGGAGAGGCAAAATGCGCAAGCTGAGGATCGACCCAATCCCCCCTGCGTGCTGTCGATC
65 GTCGGTCGGAGAGGC-AAATGCACAAGCCGAGGATCGGCCCAATCCCCCCTGTGTGCTACCGATC
** * * *
25734027 CTATTGCCAGAACCCTTGGTTCGGTCCGAT
129 CTGCTGCC-GAACCCTCGGTCCGGTCTGAT
* * * * * * * *
25734057 CTGAGACT-GGGAATGAACTCCGTATGCATAAGTCAACCCACGTACCGAGCGTGCGGGCGCTGAG
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* * * * * * * * *
25734121 CCAGTCGGAGAGGTATATACGA-AAGTCGAGGATCGGCCCAATCCCCCTCTGTATG-AAGCCGGT
66 TCGGTCGGAGAGGCAAATGC-ACAAGCCGAGGATCGGCCCAATCCCCC-CTGTGTGCTA-CCGAT
* * * **
25734184 CCCGCTGCCACAACCATCGG-CCTGGT-TGGGG
128 CCTGCTGCC-GAACCCTCGGTCC-GGTCT-GAT
* * * * * * *
25734215 CTTAGA-AATTGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGTGCTCAG
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
* *
25734279 TCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAGTCCCCCCTGTGTGCTACCGATCC
66 TCGGTCGGAGAGGCA-AATGCACAAGCCGAGGATCGGCCCAATCCCCCCTGTGTGCTACCGATCC
*
25734344 TGCTGTCGTAACCCTCGGTCCGGTCTGAT
130 TGCTGCCG-AACCCTCGGTCCGGTCTGAT
*
25734373 CTTAGACTA-GGAATGAACTTCGTATGC
1 CTTAGACTATGGAATGAACTCCGTATGC
25734400 TTAGACTGGG
Statistics
Matches: 254, Mismatches: 74, Indels: 30
0.71 0.21 0.08
Matches are distributed among these distances:
157 27 0.11
158 196 0.77
159 31 0.12
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
TCGGTCGGAGAGGCAAATGCACAAGCCGAGGATCGGCCCAATCCCCCCTGTGTGCTACCGATCCT
GCTGCCGAACCCTCGGTCCGGTCTGAT
Found at i:25734414 original size:26 final size:26
Alignment explanation
Indices: 25734373--25734425 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25734363 CCGGTCTGAT
*
25734373 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
25734399 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25734425 C
1 C
25734426 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25734781 original size:26 final size:26
Alignment explanation
Indices: 25734740--25734792 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25734730 CCGGTCTGAT
25734740 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
* *
25734766 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
25734792 C
1 C
25734793 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:25734871 original size:367 final size:365
Alignment explanation
Indices: 25734180--25735183 Score: 1233
Period size: 367 Copynumber: 2.7 Consensus size: 365
25734170 TGTATGAAGC
* * * * * ** * *
25734180 CGGTCCCGCTGCCACAACCATCGGCCTGGTTGGGGCTTAGAAATTGAATG-AGCTCCCTATGCCT
1 CGGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCT
* * * * * *
25734244 AAGCCAACCCATGAAACGGGCGTGTGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCACAAGCCGG
65 AAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG-CCGTCGGAGAGGCAGAATGCGCAAGCCGG
* * * *
25734309 GGATCGGCCC-AGTCCCCCCTGTGTGCTACCGATCCTGCTGTCGTAACCCTCGGTCCGGTCTGAT
129 GG-TCGGCCCGA-TCCCCCCTGCGTGCTGCCAATCCTGCTGTCGTAACCCTCGATCCGGTCTGAT
25734373 CTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACAC
192 CTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC-C
* * * * * * ** *
25734438 ATGAAACGAGCGTGCGGGGGCTCAGCTGGCCGGAGAGGCCGGCTGGAAAGGCATAATACGCAAGC
256 ACGAAACGAGCGTACAGGCGCTCAGCTAGCCGGAGAGCCCGGCCAGAAAGGCATAATACACAAGC
* * * *
25734503 CGGGGATCAACCCGGTCCCCCTCTACGTGCTGCTGATCCCGCTG-
321 CGGGGATCAACCCGATCCCCCTCTACGTGCTACCGATCCAGCTGT
*
25734547 CTGGTCCTGCTACCACAACCCTCAGTCTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCT
1 C-GGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCT
* * * * * *
25734612 AAGCCAACCCACGAAACGAGCGTACAGGCACTCAACCAGTCGGAGAGGCAGATTGCGCAAGCCGG
65 AAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCC-GTCGGAGAGGCAGAATGCGCAAGCCGG
* * * *
25734677 GGTCGACCCGATCCCCCCTGCATGCTGTCAATCTTGCTGTCGTAACCCTCGATCCGGTCTGATCT
129 GGTCGGCCCGATCCCCCCTGCGTGCTGCCAATCCTGCTGTCGTAACCCTCGATCCGGTCTGATCT
*
25734742 TAGACTAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCGAC
194 TAGACTAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC-AC
* * * *
25734807 GAAACGAGCGTATAGGCGCTCAG-TCAGTCGGAGAGCCCGGCCAGAGAGGCATAATGCACAAGCC
258 GAAACGAGCGTACAGGCGCTCAGCT-AGCCGGAGAGCCCGGCCAGAAAGGCATAATACACAAGCC
* * *
25734871 GGGGATCAGCCCGATCCCCCTCTATGTGCTACCGATCCATCTGT
322 GGGGATCAACCCGATCCCCCTCTACGTGCTACCGATCCAGCTGT
* * *
25734915 CGGTCCTGCTACCATAACCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTACTTCGTATGCCTA
1 CGGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTA
* * ** *
25734980 AACCAACCCAAGAAACAAATGTGCGGGCGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCCAGG
66 AGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCGTC-GGAGAGGCAGAATGCGCAAGCC-GG
* * * * ** * * *
25735045 GATTGGCCCGATCTCTCCTGCGTGCTGCCAATCCTGCTGTCGCGACCCTCGATCCGATCCGCTCT
129 GGTCGGCCCGATCCCCCCTGCGTGCTGCCAATCCTGCTGTCGTAACCCTCGATCCGGTCTGATCT
* * *
25735110 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCCC
194 TAGACTAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA-CCAC
25735175 GAAACGAGC
258 GAAACGAGC
25735184 ATGCGGGCGC
Statistics
Matches: 545, Mismatches: 82, Indels: 19
0.84 0.13 0.03
Matches are distributed among these distances:
366 4 0.01
367 310 0.57
368 228 0.42
369 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (365 bp):
CGGTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTA
AGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCGTCGGAGAGGCAGAATGCGCAAGCCGGGG
TCGGCCCGATCCCCCCTGCGTGCTGCCAATCCTGCTGTCGTAACCCTCGATCCGGTCTGATCTTA
GACTAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCACGAA
ACGAGCGTACAGGCGCTCAGCTAGCCGGAGAGCCCGGCCAGAAAGGCATAATACACAAGCCGGGG
ATCAACCCGATCCCCCTCTACGTGCTACCGATCCAGCTGT
Found at i:25735137 original size:26 final size:26
Alignment explanation
Indices: 25735108--25735160 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25735098 CCGATCCGCT
25735108 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25735134 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25735160 C
1 C
25735161 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25736142 original size:159 final size:157
Alignment explanation
Indices: 25735853--25736340 Score: 496
Period size: 159 Copynumber: 3.1 Consensus size: 157
25735843 GCATGGAATG
* *
25735853 AACTCCGTATGCCTAAGCCTACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGTCGAAGAGGCAG
1 AACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CGGTCGAAGAGGCAG
* * * * **
25735918 AATGTGCAAGTCAGGGA-TCGACTCGGTCCCCCCTCACGTGCTGTCGATCCTGCTGCCGTAACCC
65 AATGCGCAAGTCGGGGATTAG-CTCGATCCCCCCT-ACGTGCTGTCGATCCTGCTGCCACAACCC
* *
25735982 TCAGTCCGGTCCAATCTTAAACTGGGAACA
128 TCAATCCGGTCCAATCTTAGACTGGGAACA
* * * *
25736012 AACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCAGGTCGAAGAGGCAT
1 AACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC-GGTCGAAGAGGCAG
** * * ** *
25736077 AACACGCAAGTCGGGGATTAGCTCAATCCCCCTCTACGTGCTGTCGGTCCCACTACCACAACCCT
65 AATGCGCAAGTCGGGGATTAGCTCGATCCCCC-CTACGTGCTGTCGATCCTGCTGCCACAACCCT
* * **** *
25736142 CAAT-CTGACTGGGGCTTAGACAT-GGAAGA
129 CAATCCGGTC-CAATCTTAGAC-TGGGAACA
* * * * *
25736171 AGCTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCTGGTCGGAGAGGCAG
1 AACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC-GGTCGAAGAGGCAG
* ** ** *
25736236 AATGCGCAAGTCGGGGATCAGCTCGATCCCCCCTGTGTGCTACCGATCCTGCTGTCACAACCCTC
65 AATGCGCAAGTCGGGGATTAGCTCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTC
* **
25736301 AATCCGGTCTAATCTTAGACTGGGAATG
130 AATCCGGTCCAATCTTAGACTGGGAACA
*
25736329 AACTCTGTATGC
1 AACTCCGTATGC
25736341 TTAGACTTGG
Statistics
Matches: 260, Mismatches: 62, Indels: 15
0.77 0.18 0.04
Matches are distributed among these distances:
157 1 0.00
158 51 0.20
159 203 0.78
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
AACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCGGTCGAAGAGGCAGA
ATGCGCAAGTCGGGGATTAGCTCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCA
ATCCGGTCCAATCTTAGACTGGGAACA
Found at i:25736355 original size:26 final size:26
Alignment explanation
Indices: 25736314--25736366 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25736304 CCGGTCTAAT
*
25736314 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25736340 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25736366 C
1 C
25736367 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25737323 original size:26 final size:26
Alignment explanation
Indices: 25737294--25737346 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25737284 CTGGTCCGAT
25737294 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
25737320 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25737346 C
1 C
25737347 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25737691 original size:26 final size:26
Alignment explanation
Indices: 25737662--25737740 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
25737652 CCGATCCAAT
*
25737662 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
25737688 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
25737714 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
25737740 C
1 C
25737741 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:25738026 original size:394 final size:393
Alignment explanation
Indices: 25737294--25738108 Score: 1012
Period size: 394 Copynumber: 2.1 Consensus size: 393
25737284 CTGGTCCGAT
* *
25737294 CTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCC
1 CTTAGACTAGGGATGAACT-CGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * * ** *
25737359 ATGAAATGAACGTGCGGACACTCAGCCAATCGGAGAGGCCAGTCGGAGAGGCATAATGCACAAGT
65 ATGAAATGAACGTGCGGACACTCAGCCAACCGAAAAAGCCAGTCAAAGAGGCATAATGCACAAGC
** * *
25737424 TGGGGATCAGTCCGATTCCCTTCTGCGTGCTGCCGATCCCGCTACCGGTCCTACTGCCACAACCC
130 TAAGGATCAGCCCGATTCCCTTCTGCGTGCTGCCGATCCCGCTACCAGTCCTACTGCCACAACCC
* ** *
25737489 TCGGTCTGGTTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGT
195 TCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAACT
* * * * *
25737554 GTACGGGCACTCAACCGATCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGATCCCCCTTA
260 GTACGGGCACTCAACCGATCAGAGAGCCAGAATGCGCAAGACGGGGATCGGCCCGATCCCCCCTA
* * * * *
25737619 TGTGCTACCGATCCTGCTGTCAT-AACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCC
325 CGTGCTACCGATCCTACT-ACATCAACCCTCGATCCGATCCAATCTTAGACCGAGAATGAACTCC
25737683 GTATG
389 GTATG
*
25737688 CTTAGACTGGGGATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTAGGGATGAACTC-GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
** * * * * **
25737753 ATGAAATGAGTGTGTGGGCACTCAGTCGACCGAAAAAAG-CAGGTCAAAGAGGCATAATGGGCAA
65 ATGAAATGAACGTGCGGACACTCAGCCAACCG-AAAAAGCCA-GTCAAAGAGGCATAATGCACAA
* ** *
25737817 GCTAAGGATCAGCCCGA-TCCCTCTCTGCGTGCTGTCGATCCCGCTGTCAGTCCTGCTGCCACAA
128 GCTAAGGATCAGCCCGATTCCCT-TCTGCGTGCTGCCGATCCCGCTACCAGTCCTACTGCCACAA
*
25737881 CCCTCGGTCCGACT-GGGCTTAGACGTGGAATGTATTCCGTATGCCTAA-CCTAACCCACGAAAC
192 CCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCC-AACCCACGAAAC
* * ** * * * *
25737944 GACTGTCCGGGCGTTCAGCCGGTCAGAGAAGCCA-AATGCGCAAGATGGGGATTGGCCCGATCCC
256 AACTGTACGGGCACTCAACCGATCAGAG-AGCCAGAATGCGCAAGACGGGGATCGGCCCGATCCC
* * * * *
25738008 CCCTGCGTGCTGCCGATCCTACTACCTCAACCCTCGATTCGATCCGATCTTAGACCGAGAATGAA
320 CCCTACGTGCTACCGATCCTACTACATCAACCCTCGATCCGATCCAATCTTAGACCGAGAATGAA
25738073 CTCCGTATG
385 CTCCGTATG
*
25738082 CTTAGACTAGTGATGAACTACGTATGC
1 CTTAGACTAGGGATGAACT-CGTATGC
25738109 CTAAGTCAAC
Statistics
Matches: 357, Mismatches: 56, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
393 5 0.01
394 266 0.75
395 86 0.24
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (393 bp):
CTTAGACTAGGGATGAACTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
TGAAATGAACGTGCGGACACTCAGCCAACCGAAAAAGCCAGTCAAAGAGGCATAATGCACAAGCT
AAGGATCAGCCCGATTCCCTTCTGCGTGCTGCCGATCCCGCTACCAGTCCTACTGCCACAACCCT
CGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAACTG
TACGGGCACTCAACCGATCAGAGAGCCAGAATGCGCAAGACGGGGATCGGCCCGATCCCCCCTAC
GTGCTACCGATCCTACTACATCAACCCTCGATCCGATCCAATCTTAGACCGAGAATGAACTCCGT
ATG
Found at i:25740276 original size:26 final size:26
Alignment explanation
Indices: 25740247--25740296 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
25740237 CCATTCCGAT
* *
25740247 CTTAGATTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25740273 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
25740297 CGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25740675 original size:368 final size:365
Alignment explanation
Indices: 25740053--25741441 Score: 1392
Period size: 368 Copynumber: 3.8 Consensus size: 365
25740043 TGCGTGCTGT
** * *
25740053 CGGT-CTGACTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATG-AGGTCCCTATGCC
1 CGGTCCTG-CTACCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTA-CT-CCTATGCC
* * * ** ** * * * * *
25740116 TAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAACCGGTCGGAGAGGCAGAATACGGCAAGCC
63 TAAGCCAACCCACGAAATGAGCGTGC-GGCACTCAGTCGGCCGGAGAGGTAAAATGC-GTAAGCC
* * *** * * * * * * * ** *
25740181 GGAGATCGGCTCGGTCCCCCCTATTTGTTGCCGATCCTGTTGCCACAACCCTTGATCCATTCCGA
126 GGGGATCGCCT-GGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGA
* * *
25740246 TCTTAGATTGGTAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACC
190 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
* ** *
25740311 CATAAAATGAGTGTGCGGGCGCTCAGCCGGCCAGAGAGGCCGGTCGGAGAGGCATAATGTGCAAG
255 CATGAAACAAGTGTGCGGGCGCTCAGCCGGCCAGAGAGGCCGGTCGGAGAGGCATAATGCGCAAG
* * * * *
25740376 CCAAGGATTAGCCCAGTCCCCTTCTGCGTACTGTCGATCCCACTTC
320 CCGAGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCGATCCCACTGC
* ** * *
25740422 CAGTTTTGCTGCTACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTA
1 CGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCC-TATGCCTA
* * * * * * * *
25740487 AGCCAACCCATGAAACGAGCGTGCAGGCACTCAGTAGGCTGAAAAGGCAAAATGCGTAAGTCGGG
65 AGCCAACCCACGAAATGAGCGTGC-GGCACTCAGTCGGCCGGAGAGGTAAAATGCGTAAGCCGGG
*
25740552 GATCGACCTGGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACTCTCGGTCCGGTCTGATCT
129 GATCG-CCTGGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCT
* * * * * ** *
25740617 GATACTGGGAATGAACTCCGTATGCTTAGACTGAGAACGAACTCTATATGCCTAAGTCAACCAAT
193 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAT
* *
25740682 GAAACAAGTGTACGGGCGCT--------C----A-GCCGGTCGGAGAGGCATAATGCGCAAGTCG
258 GAAACAAGTGTGCGGGCGCTCAGCCGGCCAGAGAGGCCGGTCGGAGAGGCATAATGCGCAAGCCG
* * * * *
25740734 GGGATCAGTCGAGTCCCCCTCTGTGTGCTGTCGATCCTACTGC
323 AGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCGATCCCACTGC
* * * *
25740777 CGGTCCTACTACCATAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCCTATGCCTA
1 CGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACT-CCTATGCCT-
* * * *
25740842 AAG-CAACCCACGAAATGAGCGTGCGGGCACTCAGCCGACCGGAGAGGTAGAATGCGTAAGCCAG
64 AAGCCAACCCACGAAATGAGCGTGC-GGCACTCAGTCGGCCGGAGAGGTAAAATGCGTAAGCCGG
* * * * * *
25740906 GGATCGGCCCGATCCCTCATGCATGCTGTCAATCCTGCTGTCGCAACCCTCGGTTCGGTCTGATC
128 GGATC-GCCTGGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATC
* *
25740971 TTAGACTGGGAATGAATTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
192 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* ** * * * * ** **
25741036 TGAAACGAGCATGTGGGCGCTCAGTCGGTCGGAGAGGCCGACCAAAGAGGCATAATGCGCAAGCC
257 TGAAACAAGTGTGCGGGCGCTCAGCCGGCCAGAGAGGCCGGTCGGAGAGGCATAATGCGCAAGCC
*** * *
25741101 GAGGATCAGCCTTTTCCCCCTCTGCATGCTGCCGAT-CCAGCTGC
322 GAGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCGATCCCA-CTGC
* *
25741145 CGGTCCTGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACGTGGAATGTTCTCTCTATGCCTA
1 CGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTC-CTATGCCTA
* *
25741210 AGCCAACCCACGAAATG-GACGTGCGGACGCTCAGTCGGCCGGAGAGGTAAAATGCGCAAGCCGG
65 AGCCAACCCACGAAATGAG-CGTGCGG-CACTCAGTCGGCCGGAGAGGTAAAATGCGTAAGCCGG
* * * * * * * * *
25741274 TGATCGGCTCGGTACCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTTGATCTGATCCGATC
128 GGATCGCCT-GGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATC
*
25741339 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCA
192 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* * * *
25741404 CGAAACAAGTGTGCGGGCGTTCAACCGACCAGAGAGGC
257 TGAAACAAGTGTGCGGGCGCTCAGCCGGCCAGAGAGGC
25741442 AGGATGCGCA
Statistics
Matches: 827, Mismatches: 167, Indels: 53
0.79 0.16 0.05
Matches are distributed among these distances:
355 288 0.35
356 7 0.01
360 1 0.00
363 1 0.00
367 12 0.01
368 424 0.51
369 91 0.11
370 3 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (365 bp):
CGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCTATGCCTAA
GCCAACCCACGAAATGAGCGTGCGGCACTCAGTCGGCCGGAGAGGTAAAATGCGTAAGCCGGGGA
TCGCCTGGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
ACAAGTGTGCGGGCGCTCAGCCGGCCAGAGAGGCCGGTCGGAGAGGCATAATGCGCAAGCCGAGG
ATCAGCCCAGTCCCCCTCTGCGTGCTGTCGATCCCACTGC
Found at i:25740864 original size:355 final size:351
Alignment explanation
Indices: 25740349--25741454 Score: 1219
Period size: 355 Copynumber: 3.1 Consensus size: 351
25740339 GGCCAGAGAG
* * * * *
25740349 GCCGGTCGGAGAGGCATAATGTGCAAGCCAAGGATTAGCCCAGTCCCCTTCTGCGTACTGTCGAT
1 GCCGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCGAT
* * ** * * *
25740414 CCCACTTCCAGTTTTGCTGCTACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCG
66 -CCACTGCCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCC
* * * * * * *
25740479 TATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAGTAGGCTGAAAAGGCAAAATGCGT
130 TATGCCTAAGCCAACCCACGAAATGAGCGTGC-GGCACTCAGTCGGCCGGAGAGGTAAAATGCGT
* *
25740544 AAGTCGGGGATCGACCTGGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACTCTCGGTCCGG
194 AAGCCGGGGATCG-CCTGGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGG
* * * * * **
25740609 TCTGATCTGATACTGGGAATGAACTCCGTATGCTTAGACTGAGAACGAACTCTATATGCCTAAGT
258 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
*
25740674 CAACCAATGAAACAAGTGTACGGGCGCTCA
323 CAACCCATGAAACAAGTGT-CGGGCGCTCA
* * * * *
25740704 GCCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCAGTCGAGTCCCCCTCTGTGTGCTGTCGAT
1 GCCGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCGAT
* * * *
25740769 CCTACTGCCGGTCCTACTACCATAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCC
66 CC-ACTGCCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCC
* * *
25740834 TATGCCTAAAG-CAACCCACGAAATGAGCGTGCGGGCACTCAGCCGACCGGAGAGGTAGAATGCG
130 TATGCCT-AAGCCAACCCACGAAATGAGCGTGC-GGCACTCAGTCGGCCGGAGAGGTAAAATGCG
* * * * * * *
25740898 TAAGCCAGGGATCGGCCCGATCCCTCATGCATGCTGTCAATCCTGCTGTCGCAACCCTCGGTTCG
193 TAAGCCGGGGATC-GCCTGGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCG
* *
25740963 GTCTGATCTTAGACTGGGAATGAATTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
257 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
*
25741028 TCAACCCATGAAACGAGCATGT-GGGCGCTCA
322 TCAACCCATGAAACAAG--TGTCGGGCGCTCA
* ***
25741059 GTCGGTCGGAGAGGCCGACCAAAGAGGCATAATGCGCAAGCCGAGGATCAGCCTTTTCCCCCTCT
1 GCCGGTC------G--G-----AGAGGCATAATGCGCAAGCCGAGGATCAGCCCAGTCCCCCTCT
* * *
25741124 GCATGCTGCCGATCCAGCTGCCGGTCCTGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACGT
53 GCGTGCTGTCGATCCA-CTGCCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACGT
* * *
25741189 GGAATGTTCTCTCTATGCCTAAGCCAACCCACGAAATG-GACGTGCGGACGCTCAGTCGGCCGGA
117 GGAATGTACTCCCTATGCCTAAGCCAACCCACGAAATGAG-CGTGCGG-CACTCAGTCGGCCGGA
* * * * *
25741253 GAGGTAAAATGCGCAAGCCGGTGATCGGCTCGGTACCCCCTGCGTGCTGTCGATCCTGCTGTCGC
180 GAGGTAAAATGCGTAAGCCGGGGATCGCCT-GGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGC
* * * * * *
25741318 AACCCTTGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATAAACT
244 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
* *
25741383 CCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGCGTTCA
309 CCGTATGCCTAAGTCAACCCATGAAACAAGTGT-CGGGCGCTCA
* ** * **
25741427 ACCGACCAGAGAGGCAGGATGCGCAAGC
1 GCCGGTCGGAGAGGCATAATGCGCAAGC
25741455 TAGGGATCGA
Statistics
Matches: 623, Mismatches: 103, Indels: 50
0.80 0.13 0.06
Matches are distributed among these distances:
354 2 0.00
355 312 0.50
356 4 0.01
357 3 0.00
360 1 0.00
361 1 0.00
363 1 0.00
366 3 0.00
367 9 0.01
368 287 0.46
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (351 bp):
GCCGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCGAT
CCACTGCCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCCT
ATGCCTAAGCCAACCCACGAAATGAGCGTGCGGCACTCAGTCGGCCGGAGAGGTAAAATGCGTAA
GCCGGGGATCGCCTGGTCCCCCCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
CCCATGAAACAAGTGTCGGGCGCTCA
Found at i:25740999 original size:26 final size:26
Alignment explanation
Indices: 25740970--25741022 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25740960 TCGGTCTGAT
* *
25740970 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25740996 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25741022 C
1 C
25741023 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25741367 original size:26 final size:26
Alignment explanation
Indices: 25741338--25741390 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25741328 CTGATCCGAT
*
25741338 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
25741364 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
25741390 C
1 C
25741391 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:25742122 original size:26 final size:26
Alignment explanation
Indices: 25742086--25742138 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25742076 TCGGTCTGAT
25742086 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* * *
25742112 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
25742138 C
1 C
25742139 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:25742483 original size:26 final size:26
Alignment explanation
Indices: 25742454--25742506 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25742444 CCAGTCCGAT
25742454 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25742480 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25742506 C
1 C
25742507 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25743922 original size:26 final size:26
Alignment explanation
Indices: 25743871--25743923 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
25743861 CCGATCCGAT
*
25743871 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25743897 CTTAGACTAGGG-ATGAAGTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
25743923 C
1 C
25743924 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25744615 original size:110 final size:110
Alignment explanation
Indices: 25744422--25744642 Score: 424
Period size: 110 Copynumber: 2.0 Consensus size: 110
25744412 CACAACCTTC
* *
25744422 GGTCCGGTTGGGGCTTATACTTGGAATGTACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGT
1 GGTCCGGTTGGGGCTTAGACTTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
25744487 TGTATTTTTGTCCCAAAATTTGGTAGAGGCGATCCTTGTATTTTT
66 TGTATTTTTGTCCCAAAATTTGGTAGAGGCGATCCTTGTATTTTT
25744532 GGTCCGGTTGGGGCTTAGACTTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
1 GGTCCGGTTGGGGCTTAGACTTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
25744597 TGTATTTTTGTCCCAAAATTTGGTAGAGGCGATCCTTGTATTTTT
66 TGTATTTTTGTCCCAAAATTTGGTAGAGGCGATCCTTGTATTTTT
25744642 G
1 G
25744643 TTAGCATGCA
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 109 1.00
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (110 bp):
GGTCCGGTTGGGGCTTAGACTTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
TGTATTTTTGTCCCAAAATTTGGTAGAGGCGATCCTTGTATTTTT
Found at i:25744933 original size:11 final size:11
Alignment explanation
Indices: 25744919--25744944 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
25744909 GCTCTCCGAT
25744919 GATGCTCCAGC
1 GATGCTCCAGC
25744930 GATGCTCCAGC
1 GATGCTCCAGC
25744941 GATG
1 GATG
25744945 GTGCCCCAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
GATGCTCCAGC
Found at i:25745558 original size:26 final size:26
Alignment explanation
Indices: 25745517--25745569 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25745507 CCGATCGGAT
*
25745517 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
25745543 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
25745569 C
1 C
25745570 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:25745690 original size:184 final size:184
Alignment explanation
Indices: 25745371--25745727 Score: 455
Period size: 184 Copynumber: 1.9 Consensus size: 184
25745361 TTGACATGGA
* * * *
25745371 ATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTCTGGGCGTTCAGTCGGCCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTCTGGGCGCTCAGCCGGCCGGAGAGG
* * * * * * * * * *
25745436 TAGAATGCGCAAGATGGGTATCGGTCTGATCCCCCGTGCGTGCTGTCGATCCTGCTGCCGCAACC
66 CAAAATGCACAAGATGGGGATCGGCCCGATCCCCCATGCGTGCTGTCGATCCTACTACCACAACC
*
25745501 CTCGGTCCGATCGGATCTTAGACTGAGAATGAACTCTGTATGCTTAGACTGGGG
131 CTCGGTCCGATCGGATCTTAGACTGAGAATAAACTCTGTATGCTTAGACTGGGG
* * * * * *
25745555 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC-GGGTGCTCAGCCGGTCGGAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGT-CTGGGCGCTCAGCCGGCCGGAGAG
* * * *
25745619 GCAAAATGCACAAGTTGGGGATCGGCCCGGTCCCCTATGCGTGCTGTCGATCTTACTACCACAAC
65 GCAAAATGCACAAGATGGGGATCGGCCCGATCCCCCATGCGTGCTGTCGATCCTACTACCACAAC
* *
25745684 CCTCGGTCCGATCTGATCTTAGACTGGGAATAAACTCTGTATGC
130 CCTCGGTCCGATCGGATCTTAGACTGAGAATAAACTCTGTATGC
25745728 ATAAGTCAAC
Statistics
Matches: 145, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
184 144 0.99
185 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (184 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTCTGGGCGCTCAGCCGGCCGGAGAGG
CAAAATGCACAAGATGGGGATCGGCCCGATCCCCCATGCGTGCTGTCGATCCTACTACCACAACC
CTCGGTCCGATCGGATCTTAGACTGAGAATAAACTCTGTATGCTTAGACTGGGG
Found at i:25745803 original size:158 final size:158
Alignment explanation
Indices: 25745543--25746043 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 158
25745533 ACTCTGTATG
* * *
25745543 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
* **** *
25745608 CGGTCGGAGAGGCAAAATGCACAAGTTGGGGATCGGCCCGGT-CCCCTATGCGTGCTGTCGATCT
66 CTGTCGGAGAGGCAAAATGCACAAGCCAAGGATCGGCCCGGTCCCCCTAT-CGTGCTGCCGATCT
*
25745672 TACTACCACAACCCTCGGTCCGATCTGAT
130 TGCTACCACAACCCTCGGTCCGATCTGAT
* * * ** * *
25745701 CTTAGACTGGGAATAAACTCTGTATGCATAAGTCAACCCATGAAACAAGCGTGCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
** * * * * * * * * *
25745766 CTACCGAAGAGGCATAATGCACAAGCCAAGGAACGGCCCGATCCCCCTCTTCGTACTACCGGTCC
66 CTGTCGGAGAGGCAAAATGCACAAGCCAAGGATCGGCCCGGTCCCCCT-ATCGTGCTGCCGATCT
* * * **
25745831 CGC-AGCCACAACCCTCAGTCCG-GCTGGGG
130 TGCTA-CCACAACCCTCGGTCCGATCT-GAT
* * * *
25745860 CTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * *
25745924 CCTGTCGGAGAGGTAGAATGCACAAGCCAAGGATCGGCCCGGTCCCTCCTA-CGTGCTGCCAATC
65 CCTGTCGGAGAGGCAAAATGCACAAGCCAAGGATCGGCCCGGTCCC-CCTATCGTGCTGCCGATC
** *
25745988 TTGCTACCGTAACCCTCGGTCCGATCCGAT
129 TTGCTACCACAACCCTCGGTCCGATCTGAT
* * *
25746018 CTAAAAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25746044 TTTAGACTTG
Statistics
Matches: 264, Mismatches: 70, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
157 1 0.00
158 134 0.51
159 124 0.47
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
CTGTCGGAGAGGCAAAATGCACAAGCCAAGGATCGGCCCGGTCCCCCTATCGTGCTGCCGATCTT
GCTACCACAACCCTCGGTCCGATCTGAT
Found at i:25746122 original size:501 final size:501
Alignment explanation
Indices: 25745021--25746173 Score: 1348
Period size: 501 Copynumber: 2.3 Consensus size: 501
25745011 AATCTTAGAT
* * * * * *
25745021 TGGGAATGAGCTCCATTTGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAAA
1 TGGGAATGAACTCCGTATGCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCAAG-AAA
* * ** * *
25745086 TGAACGTGCAGGCGCTCAGCCGGTC-AGAGAGGCAGAATGTGCAAGCCGGGGATCGACACGGTCC
65 TGAACGTGCGGGCGCTCAGCCGGTCGA-AGAGGCAAAATGCACAAGCCGGGGATCGGCCCGGTCC
* * ** * * *
25745150 CCTCCTGCGTGTTGTCGATCCTATTGTCACAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATG
129 CCT-CTGCGTGCTGTCGATCCTACTACCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATA
* * * * *
25745215 AACTCCGTATGCACAAGTCAACCCACGAAACGAGCATGCGGGCGTTGAGTCGGCCGAAAAGGCAT
193 AACTCCGTATGCACAAGTCAACCCACGAAACAAGCATGCAGGCGCTGAGCCGACCGAAAAGGCAT
** * * * * * ** * *
25745280 AATGCGTAAGCCAGGGATCGGTCTGATCCCCCTCTGTGTGCTATTAGTCTCGCTGCCACAACCCT
258 AATGCACAAGCCAAGGAACGGCCCGATCCCCCTCTGTGTACTACCAGTCCCGCAGCCACAACCCT
*
25745345 CGATCCGGCTAGGGCTTTGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGCG
323 CGATCCGGCTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGCG
* * * * * * *
25745410 TCTGGGCGTTCAGTCGGCCGGAGAGGTAGAATGCGCAAGATGGGTATCGGTCTGATCCCCCGTGC
388 TCTGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCACAAGATAGGTATCGGCCCGATCCCCCGTAC
* * * * * *
25745475 GTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGATCGGATCTTAGAC
453 GTGCTGCCAATCCTGCTACCGCAACCCTCGGTCCGATCCGATCTAAAAC
* * * *
25745524 TGAGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
1 TGGGAATGAACTCCGTATGCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAAT
* * * **
25745589 GAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAAAATGCACAAGTTGGGGATCGGCCCGGTCCCC
66 GAACGTGCGGGCGCTCAGCCGGTCGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGGTCCCC
* *
25745654 TATGCGTGCTGTCGATCTTACTACCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATAAAC
131 TCTGCGTGCTGTCGATCCTACTACCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATAAAC
* * * * * *
25745719 TCTGTATGCATAAGTCAACCCATGAAACAAGCGTGCAGGCGCTGAGCCTACCGAAGAGGCATAAT
196 TCCGTATGCACAAGTCAACCCACGAAACAAGCATGCAGGCGCTGAGCCGACCGAAAAGGCATAAT
*
25745784 GCACAAGCCAAGGAACGGCCCGATCCCCCTCT-TCGTACTACCGGTCCCGCAGCCACAACCCTC-
261 GCACAAGCCAAGGAACGGCCCGATCCCCCTCTGT-GTACTACCAGTCCCGCAGCCACAACCCTCG
* ** *
25745847 AGTCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAATGGGCGT
325 A-TCCGGCTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGCGT
* * *
25745912 GC-GGGCGCTCAGCCTGTCGGAGAGGTAGAATGCACAAGCCA-AGG-ATCGGCCCGGTCCCTCC-
389 -CTGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCACAAG--ATAGGTATCGGCCCGATCCC-CCG
* * *
25745973 TACGTGCTGCCAATCTTGCTACCGTAACCCTCGGTCCGATCCGATCTAAAAG
450 TACGTGCTGCCAATCCTGCTACCGCAACCCTCGGTCCGATCCGATCTAAAAC
* * *
25746025 TGGGAATGAACTCCGTATGTTTAGACTTGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAAT
1 TGGGAATGAACTCCGTATGCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAAT
* * * ** * * * * *
25746090 GATCGTGCGGGCACTCAACCGACCGAAGAGGCATATTGCATAAGCCGGGGATCAGCCTGGTCCCC
66 GAACGTGCGGGCGCTCAGCCGGTCGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGGT-CCC
*
25746155 CTCTGCATGCTGTCGATCC
130 CTCTGCGTGCTGTCGATCC
25746174 CGCTACCAGT
Statistics
Matches: 542, Mismatches: 100, Indels: 17
0.82 0.15 0.03
Matches are distributed among these distances:
500 2 0.00
501 406 0.75
502 82 0.15
503 52 0.10
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (501 bp):
TGGGAATGAACTCCGTATGCTTAGACTTGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAAT
GAACGTGCGGGCGCTCAGCCGGTCGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGGTCCCC
TCTGCGTGCTGTCGATCCTACTACCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATAAAC
TCCGTATGCACAAGTCAACCCACGAAACAAGCATGCAGGCGCTGAGCCGACCGAAAAGGCATAAT
GCACAAGCCAAGGAACGGCCCGATCCCCCTCTGTGTACTACCAGTCCCGCAGCCACAACCCTCGA
TCCGGCTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTCT
GGGCGCTCAGCCGGCCGGAGAGGTAGAATGCACAAGATAGGTATCGGCCCGATCCCCCGTACGTG
CTGCCAATCCTGCTACCGCAACCCTCGGTCCGATCCGATCTAAAAC
Done.