Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 265 of 402
Found at i:25747622 original size:26 final size:26
Alignment explanation
Indices: 25747586--25747638 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25747576 CTGGTCCAAT
25747586 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25747612 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25747638 C
1 C
25747639 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25747958 original size:26 final size:26
Alignment explanation
Indices: 25747929--25747978 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
25747919 CCGATCTGAT
25747929 CTTAGACTGGGAATGAACTCCGTACA
1 CTTAGACTGGGAATGAACTCCGTACA
*
25747955 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
25747979 TGCCTGAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACA
Found at i:25748047 original size:343 final size:341
Alignment explanation
Indices: 25747270--25748053 Score: 869
Period size: 343 Copynumber: 2.3 Consensus size: 341
25747260 CTAGTCTGAT
* * * * *
25747270 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAA-CCATAAAACGAGCATGCAGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGC
* * * * *
25747334 CGACCGAAGAGACATAATACGCAAGTCGAGGATCAGCCCGGTCCTCCTCTGTGTGTTGCTGATCC
66 CGACCGAA-AGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCTCCTCTGCGTGCTGCTGATCC
* * *
25747399 CACTACTACAATCCTCGGTCCGACTGGGGCTTAAACATGGAATGAGCTCCCTATGCCTAAGCCAA
130 CACTACCACAACCCTCGGTCCGACTAGGGCTTAAACATGGAATGA-CTCCCTATGCCTAAGCCAA
*** * *
25747464 CCCACGAAATGGGCGTGCGGCTGCTCAGCCAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA
194 CCCACGAAACAAGCGTGCGGCTGCTCAACCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGA
* * ** * * * *
25747529 CCCGATCCCCACTGCGTGTTCTCGTTCCCACTGTCATAACCCTCGGTCTGGTCCAATCTTAGACT
259 CCCGATCCCCACTGCGTGTACTCGATCCCACTACCACAACCCTCGATCCGATCCAATCTTAGACT
**
25747594 GGGAATGAACTCCGTATG
324 GGGAATGAACTCCGTACA
*
25747612 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGC
* * * * * *
25747677 CGGTCGGAGAGGCATAATGCACAAGCCGGGGATCAGCCCGGT-TTCCTTCTGCGTGCTG-TCGAT
66 C-GACCGAAAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCTCC-TCTGCGTGCTGCT-GAT
** * * * * * **
25747740 CCTGCTGCCACAACCCTTGGTTCGACTAGGGCTTAGATATGGAATGTA-TCCCGTATTTCTAAGC
128 CCCACTACCACAACCCTCGGTCCGACTAGGGCTTAAACATGGAATG-ACTCCC-TATGCCTAAGC
* * * * * *
25747804 CAACCCATGAAACAAGTGTGCGGGTGCTCAACCAGCCAGAGAGGTAGAATGTGTAAGCCGAGGAT
191 CAACCCACGAAACAAGCGTGCGGCTGCTCAACCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGAT
* ** * **
25747869 CGACCCAGTTCCCC-CTGCGTGGTAC-CGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTT
256 CGACCC-GATCCCCACTGCGT-GTACTCGATCCCACTACCACAACCCTCGATCCGATCCAATCTT
25747932 AGACTGGGAATGAACTCCGTACA
319 AGACTGGGAATGAACTCCGTACA
* * * * *
25747955 CTTAGACTGGGGATGAACTCCGTATGCCTGAGTCAACCCACGAAACGAGCGTGCGGGCGGTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGC
**
25748020 CGACCAGAAAGGCAGGATGCGCAAGCCGAGGATC
66 CGACC-GAAAGGCATAATGCGCAAGCCGAGGATC
25748054 GAACGGGTGG
Statistics
Matches: 364, Mismatches: 69, Indels: 17
0.81 0.15 0.04
Matches are distributed among these distances:
342 44 0.12
343 306 0.84
344 14 0.04
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (341 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGC
CGACCGAAAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCTCCTCTGCGTGCTGCTGATCCC
ACTACCACAACCCTCGGTCCGACTAGGGCTTAAACATGGAATGACTCCCTATGCCTAAGCCAACC
CACGAAACAAGCGTGCGGCTGCTCAACCAGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACC
CGATCCCCACTGCGTGTACTCGATCCCACTACCACAACCCTCGATCCGATCCAATCTTAGACTGG
GAATGAACTCCGTACA
Found at i:25749101 original size:159 final size:157
Alignment explanation
Indices: 25748677--25749117 Score: 440
Period size: 159 Copynumber: 2.8 Consensus size: 157
25748667 AGCTTCGTAT
**
25748677 GCTTAGACATGGAATGAACTCCGTATGCCTAA-CCAACCCATGAAACGAGCGTGCGATCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
25748741 CCAGCCAGAGAGGCAAAACGCGTC-AGTCGGGGATCGACTCGGTCCCCCCTGCGTGTTGTCGGTC
66 CCGGCCGGAGAGGC-TAATGCG-CAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGGTC
25748805 CTGCTCCCACAACCCTCAGTCCGGTCTGA
129 CTGCTCCCACAACCCTCAGTCCGGTCTGA
* * * * * * * * *
25748834 TCTTAGA-TTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGTGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
25748898 GCCGGTCGAAGTGACATAATGCGCAAGCCGGAGATCGGCCCGGTCCCCATCTGCGTGCTGCCGGT
65 GCCGGCCGGAGAGGC-TAATGCGCAAGTCGGGGATCGGCTCGGTCCCC-CCTGCGTGCTGCCGGT
* * * * *
25748963 CCTGCTGCCACAACCTTCGGTTCGG-CTGGG
128 CCTGCTCCCACAACCCTCAGTCCGGTCT-GA
* * *
25748993 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
25749058 CTGGCCGGAGAGGCTGAATGCGCAAGTCGGGGACCGGTTCGGTCCCCCCTACATGCTGCC
66 CCGGCCGGAGAGGCT-AATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCC
25749118 AATCCGGTTC
Statistics
Matches: 221, Mismatches: 56, Indels: 13
0.76 0.19 0.04
Matches are distributed among these distances:
156 1 0.00
157 27 0.12
158 71 0.32
159 121 0.55
160 1 0.00
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCTAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGGTCCT
GCTCCCACAACCCTCAGTCCGGTCTGA
Found at i:25749167 original size:26 final size:26
Alignment explanation
Indices: 25749131--25749183 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25749121 CCGGTTCGAT
25749131 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25749157 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25749183 C
1 C
25749184 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25750899 original size:26 final size:26
Alignment explanation
Indices: 25750869--25750919 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25750859 GTTCAAAATA
*
25750869 TTAGAC-TGGGAATGAGCTCCATATGT
1 TTAGACAT-GGAATGAACTCCATATGT
*
25750895 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCATATG
25750920 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCATATGT
Found at i:25751288 original size:159 final size:153
Alignment explanation
Indices: 25750895--25751396 Score: 411
Period size: 159 Copynumber: 3.2 Consensus size: 153
25750885 CTCCATATGT
*
25750895 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAACAAGCATGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC-CACGAAACGAGCATGC-GGTGCTCAGCC
* * *
25750960 GGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTTGCGTGCTGTCGATCTT
64 GGCC-GAGAGGCAGAATGCGTAAGCCGGGGATCG-CCCGGTCCCCCCTTACGTGCTGCCGATCCT
* ** *
25751025 ACTGCTGCAACCCTCAGTCTGGTCCAA
127 ACTACCACAACCCTCAGTCCGGTCCAA
* ** * *
25751052 TCTGAGAC-TGGGAATGAACTCCGTATGCATAAGTTAACCCACAAAACGAGCATGCGAGTGCTGA
1 T-T-AGACAT-GGAATGAACTCCGTATGCCTAAGCCAA-CCACGAAACGAGCATGCG-GTGCTCA
* * * * *
25751116 GCCGACCGAAGAGGTATAATGCGCAAGCCGGGGATCAGCCCGGT-CCCCCTCTACGTGTTGCC-A
61 GCCGGCCG-AGAGGCAGAATGCGTAAGCCGGGGATC-GCCCGGTCCCCCCT-TACGTGCTGCCGA
* * * ***
25751179 GTCCTGCTACCACAATCCTCGGTCCGGTTGGGGA
123 -TCCTACTACCACAACCCTCAGTCCGG-T-CCAA
* * * *
25751213 TTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCAACGAAACGAGCATGCGGCCGCTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC-ACGAAACGAGCATGCGG-TGCTCAGCC
* * * * *
25751278 GGCCAGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGG-CCCCCCCTGCGTGCTGTCGATCAT
64 GGCC-GAGAGGCAGAATGCGTAAGCCGGGGATC-GCCCGGTCCCCCCTTACGTGCTGCCGATCCT
** * * * *
25751342 ACTACTGCAACCCTCGGTCCTGTCTGATC
127 ACTACCACAACCCTCAGTCCGGTC-CA-A
*
25751371 TTAGAC-TGGGAATGAACTCCATATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
25751397 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 54, Indels: 39
0.74 0.15 0.11
Matches are distributed among these distances:
157 4 0.01
158 64 0.24
159 195 0.72
160 6 0.02
161 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (153 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCACGAAACGAGCATGCGGTGCTCAGCCGG
CCGAGAGGCAGAATGCGTAAGCCGGGGATCGCCCGGTCCCCCCTTACGTGCTGCCGATCCTACTA
CCACAACCCTCAGTCCGGTCCAA
Found at i:25751778 original size:26 final size:26
Alignment explanation
Indices: 25751737--25751789 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25751727 TCTGTCCAAT
*
25751737 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25751763 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
25751789 C
1 C
25751790 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25752496 original size:26 final size:26
Alignment explanation
Indices: 25752458--25752510 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25752448 GGCTCAAAAT
25752458 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
25752484 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGA-ATGGGAATGAACTCCGTATG
25752510 C
1 C
25752511 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:25752838 original size:159 final size:158
Alignment explanation
Indices: 25752483--25752914 Score: 415
Period size: 159 Copynumber: 2.7 Consensus size: 158
25752473 AACTCCGTAT
* **
25752483 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGGGCGCTCAG
* * * * * *
25752548 TCAGTCGGAGAGGTAGAATGCACAAGCTGGGGATCGGCCCAATCCCCCCTACATGCTGTCGATCA
66 CCAGTCGAAAAGGCAGAATGCACAAGCTGAGGATCGGCCCAATCCCCCCTACATGCTGCCGATCA
* * *
25752613 TGCTACTACAACCCTCGGTCCGGTCTGA
131 TGCTACCACAACCCTCAGTCCGGACTGA
* * * * *
25752641 TCTTAGAC-TGGGAATGAGCTGCGTATGCCTAAGTCAACCCATGAAATAAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAGCTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGGGCGCTCA
* * * *** *
25752705 GCCGGTCGAAAAGGCATAATGCGCAAGCTGAGGATCGGCCTGGTCCCCCTCTTCATGCTGCC-AG
65 GCCAGTCGAAAAGGCAGAATGCACAAGCTGAGGATCGGCCCAATCCCCC-CTACATGCTGCCGA-
* * *
25752769 TCCTGCTGCCACAACCCTCAGTCC-GACTAGG
128 TCATGCTACCACAACCCTCAGTCCGGACT-GA
* * ** * * **
25752800 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCATACGGGCATTCAG
1 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGGGCGCTCAG
* * * **
25752865 CC-GATCGAAGAGGTAGAATGCACAAG-TAGGGGATCGGCCCGGTCCCCCCT
66 CCAG-TCGAAAAGGCAGAATGCACAAGCT-GAGGATCGGCCCAATCCCCCCT
25752915 GTGTGCTGTC
Statistics
Matches: 221, Mismatches: 46, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 100 0.45
159 119 0.54
160 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGGGCGCTCAG
CCAGTCGAAAAGGCAGAATGCACAAGCTGAGGATCGGCCCAATCCCCCCTACATGCTGCCGATCA
TGCTACCACAACCCTCAGTCCGGACTGA
Found at i:25753010 original size:26 final size:26
Alignment explanation
Indices: 25752959--25753011 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25752949 CCAATCCGAT
* *
25752959 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25752985 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
25753011 C
1 C
25753012 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25753345 original size:26 final size:26
Alignment explanation
Indices: 25753316--25753368 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25753306 CCGGTCCAAT
*
25753316 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCAAATG
*
25753342 CTTAGACTAGGGATGAACTCCAAATG
1 CTTAGACTAGGAATGAACTCCAAATG
25753368 C
1 C
25753369 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCAAATG
Found at i:25758445 original size:11 final size:11
Alignment explanation
Indices: 25758429--25758461 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
25758419 CGATTAGGCT
25758429 CTCCGACGATG
1 CTCCGACGATG
25758440 CTCCGACGATG
1 CTCCGACGATG
25758451 CTCCGACGATG
1 CTCCGACGATG
25758462 GTGCCCTGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:25758878 original size:158 final size:158
Alignment explanation
Indices: 25758558--25758996 Score: 447
Period size: 158 Copynumber: 2.8 Consensus size: 158
25758548 TTCATATGCT
* * *
25758558 TAGACATTGAGTGAACTCCGTATG-ACTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
1 TAGACATGGAATGAACTCCGTATGCA-TAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * * * **
25758622 GGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGGTCCCCC-CTATGTGCTGTCGATCTT
65 GGCCGGAGAGGCAGAATGCGCAAG-CGGGGATCGGCCCGATCCCCCTCTGTGTGCTGCCGATCCC
** * * * *
25758686 ACTACTGCAACCTTTGGTCTGGTCCGATCT
129 ACTACCACAACCCTTGCTCTGCTCCGATCG
* * * * *
25758716 TAGAC-TGTGAATGAACTCTGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGTGTTGAGCC
1 TAGACATG-GAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * *
25758780 GGCCGAAGAGGCATAATGCGCAAGACAGGGATCGGCCCGATCCCCCTCTGTGTGCTGCCGATCCC
65 GGCCGGAGAGGCAGAATGCGCAAG-CGGGGATCGGCCCGATCCCCCTCTGTGTGCTGCCGATCCC
* * ** *
25758845 GCTGCCACAACCCTTGCTCTGCTGGGGT-G
129 ACTACCACAACCCTTGCTCTGCTCCGATCG
* * * * * *
25758874 TAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGTCG
1 TAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
* * *
25758939 ACCGGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGAT-CCCCTCTGCGTGCTGCCG
66 GCCGGAGAGGCAGAATGCGCAAGC-GGGGATCGGCCCGATCCCCCTCTGTGTGCTGCCG
25758997 TAACCCTCGG
Statistics
Matches: 228, Mismatches: 48, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
157 19 0.08
158 174 0.76
159 35 0.15
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
GCCGGAGAGGCAGAATGCGCAAGCGGGGATCGGCCCGATCCCCCTCTGTGTGCTGCCGATCCCAC
TACCACAACCCTTGCTCTGCTCCGATCG
Found at i:25759543 original size:26 final size:26
Alignment explanation
Indices: 25759514--25759564 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
25759504 GGTCCGATCG
25759514 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
* * * *
25759540 TAGATTGGGGATGAACTCTGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
25759565 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:25759906 original size:26 final size:26
Alignment explanation
Indices: 25759877--25759929 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25759867 CCGATCTGAT
*
25759877 CTTAGATTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
**
25759903 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
25759929 C
1 C
25759930 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:25760628 original size:26 final size:26
Alignment explanation
Indices: 25760599--25760649 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25760589 GGCTCAAAAT
*
25760599 CTTAGAC-TGGGAAAGAGCTCCGTATG
1 CTTAGACAT-GGAAAGAACTCCGTATG
*
25760625 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAAAGAACTCCGTAT
25760650 CCCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAAAGAACTCCGTATG
Found at i:25761101 original size:26 final size:26
Alignment explanation
Indices: 25761065--25761115 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25761055 TCGGTCTGAT
25761065 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
* *
25761091 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
25761116 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:25762173 original size:26 final size:26
Alignment explanation
Indices: 25762144--25762196 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25762134 GGCTCAAAAT
* *
25762144 CTTAGAC-TGGGAATGAGCTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25762170 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25762196 C
1 C
25762197 CTAGGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25762530 original size:159 final size:156
Alignment explanation
Indices: 25762169--25762611 Score: 465
Period size: 159 Copynumber: 2.8 Consensus size: 156
25762159 AGCTCTGTAT
* * * *
25762169 GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAA-GAGCGTGCGGGCGCTCAG
** * * *
25762234 CCGGTCGGAGAGGCAGAATGCGCACGTCAGGGATCGACCCGATCCCCTCTGTGTGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCG-CCCGATCCCCTCTGTGTGCTGTCGATCA
* * *
25762299 TACTGCCATAACACTTAATCCGGTCTGA
129 TACTGCCACAACACTCAATCCGGACTGA
* * * * *
25762327 TCTTAGACTTGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAA-GAGCGTGCGGGCGCTCAG
* * * * *
25762392 CCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCAGTCCGATCCCCCTCTGTGTGCTGTCGGTC
65 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATC-GCCCGAT-CCCCTCTGTGTGCTGTCGATC
* * ** * *
25762457 ATGCTGCCACAACCCTCGGT-CTGACTGGG
128 ATACTGCCACAACACTCAATCCGGACT-GA
* * * * *
25762486 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCTACGAAACAGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAGA-GCGTGCGGGCGCTCAG
* * * * *
25762551 TCGACCGGAGAGGCAGAACGCGTAAGTCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCG
65 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATC-GCCCGATCCCCTCTGTGTGCTGTCG
25762612 CAACCCTCGA
Statistics
Matches: 232, Mismatches: 49, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
158 110 0.47
159 122 0.53
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGCCCGATCCCCTCTGTGTGCTGTCGATCATA
CTGCCACAACACTCAATCCGGACTGA
Found at i:25762669 original size:26 final size:26
Alignment explanation
Indices: 25762633--25762685 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25762623 CCGATCTGAT
*
25762633 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25762659 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25762685 C
1 C
25762686 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25763885 original size:158 final size:157
Alignment explanation
Indices: 25763384--25763885 Score: 490
Period size: 158 Copynumber: 3.2 Consensus size: 157
25763374 GCTTCGTATG
* * * * *
25763384 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACAAGCGTACAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
** * * * * * *
25763449 CGGTCGGAGAGGCAGAATACGCAAGCCGGGGATCGACTCGGTCCCCCCTGCGTACTGTCGATCCT
66 CGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTTCGTGCTGTCGATCCT
* *
25763514 ACTGTCGCAACCCTCGGTCCGATCTAAT
131 GCTGTCGCAACCCTCGGTCCG-TCTGAT
** * * * * * * *
25763542 CTTAGAC-TGGGAATGAACTCCGTATGTATAGGTCAATCGACGAAATGAGCGTACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * *
25763606 CCGACCGAAGAGGCATAATGTGCAAG-TCGGGGATCGACCCAGTCCCCCTCTGT-GTGCTGTCGA
65 CCGACCGAAGAGGCAGAATGCGCAAGCT-GGGGATCGACCCGGTCCCCC-CT-TCGTGCTGTCGA
* * * * **
25763669 TCCCGCTGCCACAACCCTCGGTCCGGCTGGGG
127 TCCTGCTGTCGCAACCCTCGGTCCGTCT-GAT
* * * * * * * *
25763701 CTTAGACATGGAATGAGCTCCCTATGCCTATGCCAACCCATGAAACGGGCATGCGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
* * **
25763766 CGACCGAAGAGGTAGAATGCACAAGCTGGGGATCGACCCGGTCCCCCCTTCGTGCTACCGATCCT
66 CGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTTCGTGCTGTCGATCCT
*
25763831 GCTGTCGCAACCCTCGATCCAGTCTGAT
131 GCTGTCGCAACCCTCGGTCC-GTCTGAT
25763859 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
25763886 TTAGATTGGG
Statistics
Matches: 269, Mismatches: 65, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 142 0.53
159 122 0.45
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTTCGTGCTGTCGATCCT
GCTGTCGCAACCCTCGGTCCGTCTGAT
Found at i:25764427 original size:26 final size:26
Alignment explanation
Indices: 25764398--25764450 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25764388 CCGATCTGAT
25764398 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25764424 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25764450 C
1 C
25764451 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25764802 original size:26 final size:26
Alignment explanation
Indices: 25764766--25764818 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25764756 CCGATCCGAT
25764766 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25764792 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25764818 C
1 C
25764819 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25765498 original size:374 final size:374
Alignment explanation
Indices: 25764799--25765547 Score: 1167
Period size: 374 Copynumber: 2.0 Consensus size: 374
25764789 ATGCTTAGAC
* *
25764799 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGTGGGCACTCAGCCGACCAG
1 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGCCGACCAG
* * * **
25764864 AGAGGTAGGATGCGCAAGCCGGGGATCGAACGGGTGGTAAGTGGGTTCAAGCACATCTTCATATT
66 AGAGGCAGGATGCGCAAACCGGGGATCGAACAGGTGGTAAGCAGGTTCAAGCACATCTTCATATT
* *
25764929 TCTGCCATGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGT
131 TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCATGT
* *
25764994 GAAGTTTCATGGCAAGATATCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGG
196 GAAGTTTCATGGCAAGAGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGG
* * * *
25765059 ATTTTTTTAAATTTTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGAGGTGACCCTTATATTTT
261 ATTTTTTTAAATTTTTTTAAAAAGAGTTTTGACACCAAATTTGGTAGAAGTGACCCTTATATTTT
* * *
25765124 TGTTGGCATGCACAAAAAAATGCAGCAAAAAACTCGATGTGGAGAAGAT
326 TGTTGGCAAGCACAAAAAAATGCAGCAAAAAACTCGAAGTAGAGAAGAT
* * *
25765173 TGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAG
1 TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGCCGACCAG
* *
25765238 AGAGGCAGGATGCGTAAACCGGGGATCGAACAGGTGGTAGGCAGGTTCAAGCACATCTTCATATT
66 AGAGGCAGGATGCGCAAACCGGGGATCGAACAGGTGGTAAGCAGGTTCAAGCACATCTTCATATT
25765303 TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCATGT
131 TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCATGT
* * * *
25765368 GAGGTTTCGTGGCAAGACGACCCGTTTT-TTTTTTTCATGATTTTTGAAACTTTTTACGGTTCGG
196 GAAGTTTCATGGCAAGA-GACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGG
* * *
25765432 GATTTTTTTAAATTTTTTTAAAAAGATTTTTGACACCAAATTTGGTAGAAGTGATCCTTGTATTT
260 GATTTTTTTAAATTTTTTTAAAAAGAGTTTTGACACCAAATTTGGTAGAAGTGACCCTTATATTT
* * * * *
25765497 TTTTTTGCAAGCACAAAAAAATTCAGCTAAAAACTTGAAGTAGAGAAGAT
325 TTGTTGGCAAGCACAAAAAAATGCAGCAAAAAACTCGAAGTAGAGAAGAT
25765547 T
1 T
25765548 TTGTGACCGT
Statistics
Matches: 339, Mismatches: 35, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
374 331 0.98
375 8 0.02
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (374 bp):
TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGCCGACCAG
AGAGGCAGGATGCGCAAACCGGGGATCGAACAGGTGGTAAGCAGGTTCAAGCACATCTTCATATT
TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCATGT
GAAGTTTCATGGCAAGAGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGG
ATTTTTTTAAATTTTTTTAAAAAGAGTTTTGACACCAAATTTGGTAGAAGTGACCCTTATATTTT
TGTTGGCAAGCACAAAAAAATGCAGCAAAAAACTCGAAGTAGAGAAGAT
Found at i:25765803 original size:11 final size:11
Alignment explanation
Indices: 25765787--25765813 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
25765777 CGGTTAAGCT
25765787 CTCCGGTGATG
1 CTCCGGTGATG
25765798 CTCCGGTGATG
1 CTCCGGTGATG
25765809 CTCCG
1 CTCCG
25765814 ACGATGGTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.33, G:0.33, T:0.26
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:25766419 original size:26 final size:26
Alignment explanation
Indices: 25766390--25766442 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25766380 CCGGTTTGAT
25766390 CTTAGACTAGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
* *
25766416 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
25766442 C
1 C
25766443 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:25766809 original size:26 final size:26
Alignment explanation
Indices: 25766757--25766809 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25766747 CTAGTTTGAT
**
25766757 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCACATG
* *
25766783 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
25766809 C
1 C
25766810 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:25767402 original size:368 final size:359
Alignment explanation
Indices: 25766204--25767424 Score: 1119
Period size: 368 Copynumber: 3.4 Consensus size: 359
25766194 TACCAATCCC
* * *
25766204 GCTGCCACAACCCTCTGTCT-GGCTGGGGCTTAGACATGGAATG-AGCTCCCTATGTCTAAGCCA
1 GCTGCCACAACCCT-TGTCTCGGCTTGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCA
* * * ** * ** *
25766267 ACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGTCGAAGAGGCAGAATACGTAAGCTGGGGATCG
64 ACCCACGAAATGAGCGTGCGGGCGCTCAGCCAATCGGAGAGGCAGAATACACAAGCCGGGGATC-
* * * *
25766332 GCCCGGTCCCCCCTACGTGCTACCGGTCCTGCTACCGTAACCCTCAGTCCGGTTTGATCTTAGAC
128 GACCGGT-CCCCCTACGTGCTACCGATCCTGCTA-CATAACCCTCA-TCTGGTTTGATCTTAGAC
* * *
25766397 TAGGAATGAACTCCGCATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCTATAAAAC
190 TAGGAATGAACTCTGCATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAAC
* * * * * * * *
25766462 AAGCATGTGGGTGCTCAGCCGATCGGAGGGGCCGGTCGGAGAGGCATAATACGCAAGTC-AGGGA
255 GAGCA--TGCGAGCTCAGTCGATCGGA-GCGTC-G-CAGAGAGGCATAATACGCAAGCCGA-GGA
* * * * *
25766526 TCAACCCCATCCCTCTCTGCGTGCTGCCGATCCCGCTGTTGGTCCT
314 TCAACCCGATCCCTCTCTACGTGCTGTCGATCTCGCTGTCGGTCCT
* * * * * *
25766572 GCTACCACAA-CCTTCTCTCAGGC-TGGGAATTAGACGTGCAATGTACTTCGT-TGCCTAAGCCA
1 GCTGCCACAACCCTTGTCTC-GGCTTGGG-CTTAGACATGGAATGTACTCCGTATGCCTAAGCCA
* * * *
25766634 ACCTACGAAATGAGCGTGCGGGCACTCAGCCGA-CTGGAGAGGCAGAATACACAAGCCGGAGATT
64 ACCCACGAAATGAGCGTGCGGGCGCTCAGCCAATC-GGAGAGGCAGAATACACAAGCCGGGGA-T
* * * * * ** * * * *
25766698 GGTCTGGTCCACCCTGCATGCTGTCGATCCTACTGCAGTAACCTTCAATCTAGTTTGATCTTAGA
127 CGACCGGTCC-CCCTACGTGCTACCGATCCTGCTACA-TAACCCTC-ATCTGGTTTGATCTTAGA
* * * *
25766763 CTGGGAATGAACTCTGCATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTTAACCCATGAAA
189 CTAGGAATGAACTCTGCATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAA
* * * *
25766828 CGAG-AGTGCGAG--CACTCAATC-G-GC-T-G-A-AGAGGCATAATACGCAAGCTGGGGATCAA
254 CGAGCA-TGCGAGCTCAGTCGATCGGAGCGTCGCAGAGAGGCATAATACGCAAGCCGAGGATCAA
* * * *
25766884 CCCGATCCCCCTCTACGTGCTGTCGATCTCACTGCCAGTCCT
318 CCCGATCCCTCTCTACGTGCTGTCGATCTCGCTGTCGGTCCT
* *
25766926 GCTGCCACAACCCTCGAT-TCGGCTTGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGCCAA
1 GCTGCCACAACCCTTG-TCTCGGCTTGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAA
* * * * * * * * * * *
25766990 CCCATGAAATGAGCTTGCAGGTGATCAACCAGTCGGACAGGCAGAATGCACAAGTCGAGGATCGA
65 CCCACGAAATGAGCGTGCGGGCGCTCAGCCAATCGGAGAGGCAGAATACACAAGCCGGGGATCGA
* * **
25767055 CACGGTCCCTCTTACGTGCTACCGATCCTGCTACTACAACCCTCGATCTGGTTCAATCTTAGACT
130 C-CGGTCCC-CCTACGTGCTACCGATCCTGCTAC-ATAACCCTC-ATCTGGTTTGATCTTAGACT
* * * * *
25767120 AGGAACGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATGCCGAAGTCAACCCACAAAACG
191 AGGAATGAACTCTGCATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACG
* * * *
25767185 AGCATACAGACGCTCAGTCGATCGGAGCGATCGCCCAGAGAGGCATAATGCGTAAGCCGAGGATT
256 AGCATGC-GA-GCTCAGTCGATCGGAGCG-TCG--CAGAGAGGCATAATACGCAAGCCGAGGATC
* * * *
25767250 AGCCTGATCCCTCTCTATGTGCTGTCGATCTCGCTATCGGTCCT
316 AACCCGATCCCTCTCTACGTGCTGTCGATCTCGCTGTCGGTCCT
* *
25767294 GCTGCCATAACCCTTGGTCT-GGCTTGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAA
1 GCTGCCACAACCCTT-GTCTCGGCTTGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAA
* * ***
25767358 CCCATGAAATGAGCGTACGGGCGCTCAGCCAATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGA
65 CCCACGAAATGAGCGTGCGGGCGCTCAGCCAATCGGAGAGGCAGAATACACAAGCCGGGGATCGA
25767423 CC
130 CC
25767425 CGATCTCCCC
Statistics
Matches: 679, Mismatches: 140, Indels: 69
0.76 0.16 0.08
Matches are distributed among these distances:
354 94 0.14
355 170 0.25
356 6 0.01
357 2 0.00
359 7 0.01
360 2 0.00
361 2 0.00
362 1 0.00
363 7 0.01
364 1 0.00
365 5 0.01
366 9 0.01
367 172 0.25
368 198 0.29
369 3 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (359 bp):
GCTGCCACAACCCTTGTCTCGGCTTGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAAC
CCACGAAATGAGCGTGCGGGCGCTCAGCCAATCGGAGAGGCAGAATACACAAGCCGGGGATCGAC
CGGTCCCCCTACGTGCTACCGATCCTGCTACATAACCCTCATCTGGTTTGATCTTAGACTAGGAA
TGAACTCTGCATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCAT
GCGAGCTCAGTCGATCGGAGCGTCGCAGAGAGGCATAATACGCAAGCCGAGGATCAACCCGATCC
CTCTCTACGTGCTGTCGATCTCGCTGTCGGTCCT
Found at i:25767780 original size:158 final size:153
Alignment explanation
Indices: 25767290--25767823 Score: 478
Period size: 158 Copynumber: 3.4 Consensus size: 153
25767280 TCGCTATCGG
** * *
25767290 TCCTGCTGCCATAACCCTTGGTCTGGCTTGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGC
1 TCCTGCTGCCGCAACCCTCGGTCTGG-TTGGGCTTAGAC-TGGAATG-ACTCCATATGCCTAAGC
* * * * *
25767355 CAACCCATGAAATGAGCGTACGGGCGCTCAGCCAATCGGAGAGGCAGAATGTGCAAGCCGGGGAT
63 CAACCCACGAAATGAGCGTGCGGGCGCTCAGCC-AGCCGAGAGGCAGAATGCGCAAGCCGGGGAT
* * *
25767420 CGACCCGATCTCCCCCTACATGCTGTCAA
127 CG-CCCGATC-CCCTCTGCGTGCTGTCAA
* * * * * * ** * * *
25767449 TCTTGCTACCGAAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCATATGCATAAGT
1 TCCTGCTGCCGCAACCCTCGGTCTGGT-TGGGCTTAGACT-GGAATG-ACTCCATATGCCTAAGC
* * * * *
25767514 CAACCCACGAAATGAGCGTGCGAGCGTTGAGCCAGCCGAAGAGGCATAATGCGCAAGCC-GAGAT
63 CAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCG-AGAGGCAGAATGCGCAAGCCGGGGAT
* **
25767578 CGGCCCGATCCCCCTCTGTGTGCTGTCGG
127 C-GCCCGAT-CCCCTCTGCGTGCTGTCAA
* * *
25767607 TCCCGCTG-TGACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAG
1 TCCTGCTGCCG-CAACCCTCGGTCTGGTT-GGGCTTAGAC-TGGAATGA-CTCCATATGCCTAAG
* *
25767671 CCAACCTACGAAATGGGCGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCGGGGA
62 CCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCC-GAGAGGCAGAATGCGCAAGCCGGGGA
*
25767736 TCAGCCCGATCCCCTCTGCGTGCTGCCAA
126 TC-GCCCGATCCCCTCTGCGTGCTGTCAA
* * * ** *
25767765 TCCTACTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTACATATGC
1 TCCTGCTGCCGCAACCCTCGGTCTGGT-TGGGCTTAGACT-GGAATG-ACTCCATATGC
25767824 TTAGACTGGG
Statistics
Matches: 294, Mismatches: 66, Indels: 31
0.75 0.17 0.08
Matches are distributed among these distances:
157 3 0.01
158 180 0.61
159 111 0.38
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (153 bp):
TCCTGCTGCCGCAACCCTCGGTCTGGTTGGGCTTAGACTGGAATGACTCCATATGCCTAAGCCAA
CCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCGAGAGGCAGAATGCGCAAGCCGGGGATCGCC
CGATCCCCTCTGCGTGCTGTCAA
Found at i:25768193 original size:26 final size:26
Alignment explanation
Indices: 25768152--25768203 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25768142 CCGGTCCGAT
*
25768152 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25768178 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
25768204 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25768709 original size:159 final size:155
Alignment explanation
Indices: 25768307--25768814 Score: 400
Period size: 158 Copynumber: 3.2 Consensus size: 155
25768297 CTGTTAATCC
* * *
25768307 TGCTGCCGGTCTTGCTGCCACAACCCTC-GATCCGGCTAGGGCTTAGACGTGAAATGTACTCCGT
1 TGCTGCC-GTCCTGCTGCCACAACCCTCAG-TCCGGCT-GGGCTTAGACATGGAATG-ACTCCGT
* ** * * *
25768371 ATGCCTAAGCCAACCCACAAAACGAGCGTGTGGGCGCTCAGTCGGTCGGAGAGGCAAAATGCGCA
62 ATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGCTCGAAGAGGCAAAATGCGCA
*
25768436 AGCCAGGGATCGACCTGGTCCCTCCTGCG
127 AGCCAGGGATCGACCTGGTCCCTCCTACG
** * * * ** * *
25768465 TGCTATCGATCCTGCTGTCGCAACCCTCAGTCCGATCTGATCTTAGA-TTGGGGATGAACTCCGT
1 TGCTGCCG-TCCTGCTGCCACAACCCTCAGTCCG-GCTGGGCTTAGACAT-GGAATG-ACTCCGT
* * * * * * *
25768529 ATGCATAAGTCAACCCTCGAAACTAGCGTACGGGCGCTGAGCCAGCT-GAAGAGGTATAATGCGC
62 ATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCC-GCTCGAAGAGGCAAAATGCGC
*
25768593 AAGCCAGGGATCGACCTGGTCTCGCT-CTATG
126 AAGCCAGGGATCGACCTGGTC-C-CTCCTACG
* * * *
25768624 TGCTGCCAGTCCTGCTGCCACAACCTTCAGTCTGGCTGGGGCTTAGACATGGAATGAGCCCCCTA
1 TGCTGCC-GTCCTGCTGCCACAACCCTCAGTCCGGCT-GGGCTTAGACATGGAATGA-CTCCGTA
* * * * * *
25768689 TGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGTCAG-TC-AGAGAGGCAAAATGCAC
63 TGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG-CCGCTCGA-AGAGGCAAAATGCGC
* * * *
25768752 AAGCCAGGGATCGCCCCGATCCCT-CTGCG
126 AAGCCAGGGATCGACCTGGTCCCTCCTACG
* * * **
25768781 TGCTGTCGATCCTGTTGTCGTAACCCTCAGTCCG
1 TGCTGCCG-TCCTGCTGCCACAACCCTCAGTCCG
25768815 ATCCGATCTT
Statistics
Matches: 270, Mismatches: 65, Indels: 31
0.74 0.18 0.08
Matches are distributed among these distances:
156 1 0.00
157 32 0.12
158 118 0.44
159 114 0.42
160 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (155 bp):
TGCTGCCGTCCTGCTGCCACAACCCTCAGTCCGGCTGGGCTTAGACATGGAATGACTCCGTATGC
CTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGCTCGAAGAGGCAAAATGCGCAAGCC
AGGGATCGACCTGGTCCCTCCTACG
Found at i:25769232 original size:26 final size:26
Alignment explanation
Indices: 25769195--25769246 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25769185 TTCAATCTTG
25769195 GACTGGGAATGAACTCCATATGCTTA
1 GACTGGGAATGAACTCCATATGCTTA
* * *
25769221 GACTGGGGATGAACTCCGTATTCTTA
1 GACTGGGAATGAACTCCATATGCTTA
25769247 AGTCAACCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
GACTGGGAATGAACTCCATATGCTTA
Found at i:25769581 original size:26 final size:26
Alignment explanation
Indices: 25769545--25769597 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25769535 CCAGTTTGAT
* *
25769545 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
25769571 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
25769597 C
1 C
25769598 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:25769645 original size:354 final size:351
Alignment explanation
Indices: 25768927--25770038 Score: 1210
Period size: 354 Copynumber: 3.1 Consensus size: 351
25768917 CCGAAGAGGC
* * * * * *
25768927 CGATCGGAGAGGAATAATGTGCAAGCCGGGGATCAGCTCGGTCCCC-CT-CTATGTGCTGTCGAT
1 CGATCGGAGAGGCATAATGCGTAAGCCGGGGATCAACCCGATCCCCTCTGC-ATGT-C-GTCGAT
* * *
25768990 CTCGCTGTCGGTCCTGCTGCCATAACCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTACCCCG
63 CCCGCTGTC-GTCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCG
* * * * ** * *
25769055 TATGCGTAAGCCAACCCATGAAACGAACGTGCGGGTGCTCAGCC-GACCAGAGACGTAGAATGCA
127 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CTGGAGAGGCAGAATGCA
* * * *
25769119 TAAGTCGAGCATCGACCCGATCCCTCC-AGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCC
191 CAAG-CCAGGATCGACCCGATCCC-CCTA-CGTGCTGTCGATCCTACTACCGCAACCCTCGATCC
** * * * *
25769183 GGTTCAATCTTGGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATTCTTAA
253 GGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
* * * *
25769248 GTCAACCCATGAAACGAGCATGTGGGCGCTTAGT
318 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* *
25769282 CGGTCGGAGAGGCATAATGCGTAAGTCGGGGATCAACCCGATCCCCTCTGCATGTCGTCGATCCC
1 CGATCGGAGAGGCATAATGCGTAAGCCGGGGATCAACCCGATCCCCTCTGCATGTCGTCGATCCC
* *
25769347 GCTCG-CAGTCCTGCTGCCATAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATTTACTCCGTA
66 GCT-GTC-GTCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTA
*
25769411 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGATCAGCCAGCTGGAGAGGCAGAATGCACAA
129 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCTGGAGAGGCAGAATGCACAA
* * * *
25769476 ACCTAGGATCGACTCGATCCCCCTTACGTGCTGTCGATCCTACTATCGCAACCCTCGATCCAGTT
194 GCC-AGGATCGACCCGATCCCCC-TACGTGCTGTCGATCCTACTACCGCAACCCTCGATCCGGTT
* * *
25769541 TGATCTTAGATTGGGAATGAACTCTGTATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCA
257 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* *
25769606 ACCCACGAAACAAGCGTGCGGGGGCTCAGTCGAT
322 ACCCACGAAACGAGCGTGCGGGCGCTCA---G-T
*
25769640 CGGAGAGGTCGGCTGGAGAGGCATAATGCGTAAGCCGAGGATCAACCCGATCCCCCTCTGCATGT
1 C---GA--T---C-GGAGAGGCATAATGCGTAAGCCGGGGATCAACCCGAT-CCCCTCTGCATGT
* * * * * * *
25769705 TGCCAATCCCACTGTCGATCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGATGTGGAATG
56 CGTCGATCCCGCTGTCG-TCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATG
* * *
25769770 TACTCCATATGCCTTAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCA-ATCGGAGAGGCA
120 TACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCT-GGAGAGGCA
* * ** * * * *
25769834 GAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGTGTGCTGCCAATCCTATTGCCGCAACCCT
184 GAATGCACAAGCCA-GGATCGACCCGAT-CCCCCTACGTGCTGTCGATCCTACTACCGCAACCCT
* * **
25769899 CCATCCGGTCTGATCTTAGACTGAAAATGAACTCCGTATGCTTAGACTGGGAGATGAACTCCGTA
247 CGATCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG-GATGAACTCCGTA
* **
25769964 TGCCTAAGTCAACCCACGAAGCGAGCGTGCGGGTACTCAGT
311 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * ** * *
25770005 CGACCAGAGAGGCAGGATGTGCAAGCCGGGGATC
1 CGATCGGAGAGGCATAATGCGTAAGCCGGGGATC
25770039 GAATGGGTAG
Statistics
Matches: 638, Mismatches: 92, Indels: 53
0.81 0.12 0.07
Matches are distributed among these distances:
353 3 0.00
354 247 0.39
355 42 0.07
356 29 0.05
357 3 0.00
358 2 0.00
361 1 0.00
362 2 0.00
363 1 0.00
365 2 0.00
366 2 0.00
367 39 0.06
368 212 0.33
369 53 0.08
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (351 bp):
CGATCGGAGAGGCATAATGCGTAAGCCGGGGATCAACCCGATCCCCTCTGCATGTCGTCGATCCC
GCTGTCGTCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATG
CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCTGGAGAGGCAGAATGCACAAGC
CAGGATCGACCCGATCCCCCTACGTGCTGTCGATCCTACTACCGCAACCCTCGATCCGGTTTGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGT
Found at i:25769942 original size:26 final size:27
Alignment explanation
Indices: 25769913--25769966 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
25769903 CCGGTCTGAT
25769913 CTTAGACT-GAAAATGAACTCCGTATG
1 CTTAGACTGGAAAATGAACTCCGTATG
* *
25769939 CTTAGACTGGGAGATGAACTCCGTATG
1 CTTAGACTGGAAAATGAACTCCGTATG
25769966 C
1 C
25769967 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 8 0.32
27 17 0.68
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (27 bp):
CTTAGACTGGAAAATGAACTCCGTATG
Found at i:25770665 original size:26 final size:26
Alignment explanation
Indices: 25770636--25770687 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25770626 TGGCTCAAAA
*
25770636 TCTTAGA-ATGGGAATGAGCTCCGTAT
1 TCTTAGACAT-GGAATGAACTCCGTAT
*
25770662 TCTTAGACATGGAATGAACTTCGTAT
1 TCTTAGACATGGAATGAACTCCGTAT
25770688 GCCAAAGCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (26 bp):
TCTTAGACATGGAATGAACTCCGTAT
Found at i:25770956 original size:159 final size:159
Alignment explanation
Indices: 25770662--25770956 Score: 341
Period size: 159 Copynumber: 1.9 Consensus size: 159
25770652 AGCTCCGTAT
* *
25770662 TCTTAGACATGGAATGAACTTCGTATGCCAAAGCTAACCCACGAAACAAGCGTACGGGCGCTCAA
1 TCTTAGACATGGAATGAACTTCGTATGCCAAAGCTAACCCACGAAACAAGCGTACAGGCACTCAA
* * ** *
25770727 CCGATCAGACAAGCAGAATGCGCAAGCTGGGGATCGACCCAATCCCCCCCTGTGTTTTGTCGATC
66 CCGATCAGACAAGCAGAATGCGCAAGCAGGGGATCGACCCAATCCCCCCCTGCGTGCTGCCGATC
*
25770792 TTGCTGTCGCAACCCTCGTTCCAATCCGA
131 CTGCTGTCGCAACCCTCGTTCCAATCCGA
* *
25770821 TCTTAGACCA-GGAATGAAC-TCTGTATG-CATAAG-TCAACCCATGAAACGAGCGTACAGGCAC
1 TCTTAGA-CATGGAATGAACTTC-GTATGCCA-AAGCT-AACCCACGAAACAAGCGTACAGGCAC
* * * ** *
25770882 T-AAGCCGATC-GAAGAAGCATAATGCGCAAGCAGGGGATCGGCCTGATCCCCCTCTGCGTGCTG
62 TCAA-CCGATCAG-ACAAGCAGAATGCGCAAGCAGGGGATCGACCCAATCCCCCCCTGCGTGCTG
*
25770945 CCGGTCCTGCTG
125 CCGATCCTGCTG
25770957 CCACAACCTT
Statistics
Matches: 113, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
158 8 0.07
159 103 0.91
160 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.20
Consensus pattern (159 bp):
TCTTAGACATGGAATGAACTTCGTATGCCAAAGCTAACCCACGAAACAAGCGTACAGGCACTCAA
CCGATCAGACAAGCAGAATGCGCAAGCAGGGGATCGACCCAATCCCCCCCTGCGTGCTGCCGATC
CTGCTGTCGCAACCCTCGTTCCAATCCGA
Found at i:25771202 original size:158 final size:158
Alignment explanation
Indices: 25770990--25771323 Score: 357
Period size: 158 Copynumber: 2.1 Consensus size: 158
25770980 GCTTAGACAT
* * ** * * ** *
25770990 GGAATGAGCTCCCTATGCCTAAGCCAACCAATGAAATGGGCGTGTGGGCATTCAGTCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCAACAAAATGAGCATACGGGCATTCAGCCGATCGGAG
* * * * * *
25771055 AGGTAGAATAC-CAAGCCGGGGATTGGCCCGGTCCCCCCTTGCATGCTACCGAACCTACTGTCAC
66 AGGCAGAATACGCAAGCCAGGGATCGACCCAGTCCCCCC-TGCATACTACCGAACCTACTGTCAC
*
25771119 AACCCTCTG-TCCGGTCTGATCATAGACTA
130 AACCCTC-GATCCGGTCCGATCATAGACTA
* * * *
25771148 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATACGGGCGTTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCAACAAAATGAGCATACGGGCATTCAGCCGATCGGAG
* * * * ** * *
25771213 AGGCAGAATGCGCAAGCCAGGGATCGATCCAGTGCCCCCTGCGTACTGTCGATCCTACTGTCGCA
66 AGGCAGAATACGCAAGCCAGGGATCGACCCAGTCCCCCCTGCATACTACCGAACCTACTGTCACA
* *
25771278 ACCCTCGATCCGGTCCGATCTTAGACTG
131 ACCCTCGATCCGGTCCGATCATAGACTA
*
25771306 GGAATGAACTCTGTATGC
1 GGAATGAACTCCGTATGC
25771324 TTAAAATGGG
Statistics
Matches: 143, Mismatches: 31, Indels: 4
0.80 0.17 0.02
Matches are distributed among these distances:
157 1 0.01
158 121 0.85
159 21 0.15
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCAACAAAATGAGCATACGGGCATTCAGCCGATCGGAG
AGGCAGAATACGCAAGCCAGGGATCGACCCAGTCCCCCCTGCATACTACCGAACCTACTGTCACA
ACCCTCGATCCGGTCCGATCATAGACTA
Found at i:25772716 original size:26 final size:26
Alignment explanation
Indices: 25772680--25772732 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25772670 TCGGTCCAAT
25772680 CTTAGACTGGGAATGAA-TGCCGTATG
1 CTTAGACTGGGAATGAACT-CCGTATG
*
25772706 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25772732 C
1 C
25772733 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25773310 original size:368 final size:366
Alignment explanation
Indices: 25772495--25773518 Score: 1338
Period size: 368 Copynumber: 2.8 Consensus size: 366
25772485 TGTCGGTTCA
* * * *
25772495 ACTGCCACAACCCTCGATTCGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAAC
1 ACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCATATGCCTAAGCCAAC
**** * * *
25772560 ATGTGAAACGGGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCGTAAGCC-GAGGATCGG
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGG
* * * * *
25772624 CTCGG-CCCCCCTGTGTGCTGTCGATCTTGCTGCCGTAACCCTTGGTTCGGTCCAATCTTAGACT
130 CTCGGTCCCCCTTGTGTGCTGTCGATCCTGCTG-CGCAACCCTCGATTCGGTCCAATCTTAGACT
*
25772688 GGGAATGAA-TGCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
194 GGGAATGAACT-CCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* ** * * *
25772752 GAGTGTGCGGGCGCTCAGCTGGCTGGAGAGGCCGACTGGAGAGGCAAATGCGCAAGCTGGGGATC
258 GAGTGTGCGGGCGCTCAGCCGGCCAGAGAGGCCGACTAGAGAGGCAAATGCGCAAGCCGAGGATC
* * *
25772817 AGCCCGATCGCCCTCGACGTGCTGTCGATCTTGTTGCTGGTCCT
323 AGCCCGATCCCCCTCGACGTGCTGTCGATCTCGTTGCCGGTCCT
* * *
25772861 ACTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAAC
1 ACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCATATGCCTAAGCCAAC
* * * *
25772926 CCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAAAATGCACAAGCCAGGGATCGGC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGC
* * * * *
25772991 TCGGTCCCCCTTGCGTGCTGTCGATCCTGCTGTCGCAACCCTC-AATCTGATCCAATCTTAAAAT
131 TCGGTCCCCCTTGTGTGCTGTCGATCCTGCTG-CGCAACCCTCGATTC-GGTCCAATCTTAGACT
** *
25773055 GGGAATGAACTCCGTATGCTTAGACTTTGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
194 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * *
25773120 AGTGTGCGGGCGCTCAGCCGGCCAGAAAGGCCG-GTCAGATAGGCATAATGCGCAAGCCGAGGAT
259 AGTGTGCGGGCGCTCAGCCGGCCAGAGAGGCCGACT-AGAGAGGCA-AATGCGCAAGCCGAGGAT
* * *
25773184 TAGCTCGATCCCCCTCTACGTGCTGTCGATCTCGTTGCCGGTCCT
322 CAGCCCGATCCCCCTCGACGTGCTGTCGATCTCGTTGCCGGTCCT
* * *
25773229 GCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAAC
1 ACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCATATGCCTAAGCCAAC
* * * * *
25773294 CCACGAAATGAGCGTGCGGGCACTCAGCCGATCAGAGAGGCAGAATGCGCAAGTCAGGGATCGGC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGC
* * ** * ** *
25773359 ACGATCCCCCTTGTGTGCTACCGATCCTACTGCTGCAACCCTCGATTCGGTCTGATTTTAGACTG
131 TCGGTCCCCCTTGTGTGCTGTCGATCCTGCTGC-GCAACCCTCGATTCGGTCCAATCTTAGACTG
* *
25773424 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGAATGCCTAAGTCAACCCACGAAATGA
195 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* *
25773489 GCGTGCGGGCGCTCAGCCGACCAGAGAGGC
260 GTGTGCGGGCGCTCAGCCGGCCAGAGAGGC
25773519 AGGATGCACA
Statistics
Matches: 567, Mismatches: 83, Indels: 14
0.85 0.12 0.02
Matches are distributed among these distances:
366 118 0.21
367 142 0.25
368 304 0.54
369 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (366 bp):
ACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCATATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGC
TCGGTCCCCCTTGTGTGCTGTCGATCCTGCTGCGCAACCCTCGATTCGGTCCAATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
TGTGCGGGCGCTCAGCCGGCCAGAGAGGCCGACTAGAGAGGCAAATGCGCAAGCCGAGGATCAGC
CCGATCCCCCTCGACGTGCTGTCGATCTCGTTGCCGGTCCT
Found at i:25773446 original size:184 final size:182
Alignment explanation
Indices: 25773256--25773694 Score: 569
Period size: 184 Copynumber: 2.4 Consensus size: 182
25773246 TCCGGCTAGG
* * *
25773256 GCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGAC-TGG-ATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * **
25773321 CCGATCAGAGAGGCAGAATGCGCAAGTCAGGGATCGGCACGATCCCCCTTGTGTGCTACCGATCC
64 CCGACCAGAGAGGCAGAATGCACAAGTCAGGGATCGGCACGATCCCCCTTACGTGCTACCGATCC
* ** * * *
25773386 TACTG-CTGCAACCCTCGAT-TCGGTCTGATTTTAGACTGGGAATGAACTCCGTAT
129 TACTGTC-GCAACCCTCGATCT-GATCCAATCTTAAAATGGGAATGAACTCCGTAT
25773440 GCTTAGACTGGGGATGAACTCCGA-ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCA
1 GCTTAGACT--GGATGAACTCC-ATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * ** *
25773504 GCCGACCAGAGAGGCAGGATGCACAAGTCGGGGATCGGCTTGATCCCCCTTACGTGCTGCCGATC
63 GCCGACCAGAGAGGCAGAATGCACAAGTCAGGGATCGGCACGATCCCCCTTACGTGCTACCGATC
**
25773569 CTGTTGTCGCAACCCTCGATCTGATCCAATCTTAAAATGGGAATGAACTCCGTAT
128 CTACTGTCGCAACCCTCGATCTGATCCAATCTTAAAATGGGAATGAACTCCGTAT
* * *
25773624 GCTTAGACTTTGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAG
1 GCTTAGAC--TGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
25773689 CCGACC
64 CCGACC
25773695 GAAAAGGTCG
Statistics
Matches: 224, Mismatches: 23, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
183 1 0.00
184 217 0.97
185 5 0.02
186 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (182 bp):
GCTTAGACTGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
GACCAGAGAGGCAGAATGCACAAGTCAGGGATCGGCACGATCCCCCTTACGTGCTACCGATCCTA
CTGTCGCAACCCTCGATCTGATCCAATCTTAAAATGGGAATGAACTCCGTAT
Found at i:25773456 original size:26 final size:26
Alignment explanation
Indices: 25773416--25773467 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
25773406 CGGTCTGATT
*
25773416 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGAATGC
*
25773442 TTAGACTGGGGATGAACTCCGAATGC
1 TTAGACTGGGAATGAACTCCGAATGC
25773468 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGAATGC
Found at i:25773570 original size:552 final size:548
Alignment explanation
Indices: 25772888--25774056 Score: 1777
Period size: 552 Copynumber: 2.1 Consensus size: 548
25772878 TCCGGTTGGG
* * * *
25772888 GCTTAGACAT-GGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
25772952 GCCGGCCGGAGAGGCAAAATGCACAAGCCAGGGATCGGCTCGGTCCCCCTTGCGTGCTGTCGATC
65 GCCGACCAGAGAGGCAAAATGCACAAGCCAGGGATCGGCTCGATCCCCCTTACGTGCTGCCGATC
25773017 CTGCTGTCGCAACCCTCAATCTGATCCAATCTTAAAATGGGAATGAACTCCGTATGCTTAGACTT
130 CTGCTGTCGCAACCCTCAATCTGATCCAATCTTAAAATGGGAATGAACTCCGTATGCTTAGACTT
* * *
25773082 TGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCGGGCGCTCAGCCGGCC-AGA
195 TGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGCCGACCGA-A
* * *
25773146 AAGGCCGGTCAGATAGGCATAATGCGCAAGCCGAGGATTAGCTCGATCCCCCTCTACGTGCTGTC
259 AAGGCCGGTCAGAAAGGCATAATGCGCAAGCCGAGGATCAGCTCGATCCCCCTCTACGTGCTGCC
* * *
25773211 GATCTCGTTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCTAG-GGCTTAGACGTGGAATGTAC
324 GATCCCGCTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCT-GCGG----GACGTGGAATGTAC
* *
25773275 TCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGATCAGAGAGGCAGAAT
384 TCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGATCAGAGAGGCAGAAT
** * * *
25773340 GCGCAAGTCAGGGATCGGCACGATCCCCCTTGTGTGCTACCGATCCTACTGCTGCAACCCTCGAT
449 GCGCAAGTCAGGGATCAACACGATCCCCCCTGTGTGCTACCGATCCTACTACCGCAACCCTCGAT
* *
25773405 TCGGTCTGATTTTAGACTGGGAATGAACTCCGTAT
514 TCGGTCTGATCTTAGACTGAGAATGAACTCCGTAT
* *
25773440 GCTTAGACTGGGGATGAACTCCGAATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * *
25773505 CCGACCAGAGAGGCAGGATGCACAAGTCGGGGATCGGCTTGATCCCCCTTACGTGCTGCCGATCC
66 CCGACCAGAGAGGCAAAATGCACAAGCCAGGGATCGGCTCGATCCCCCTTACGTGCTGCCGATCC
* *
25773570 TGTTGTCGCAACCCTCGATCTGATCCAATCTTAAAATGGGAATGAACTCCGTATGCTTAGACTTT
131 TGCTGTCGCAACCCTCAATCTGATCCAATCTTAAAATGGGAATGAACTCCGTATGCTTAGACTTT
** *
25773635 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAGCCGACCGAAAA
196 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGCCGACCGAAAA
* * *
25773700 GGTCGGTCGGAAAGGCATAATGCGTAAGCCGAGGATCAGCTCGATCCCCCTCTACGTGCTGCCGA
261 GGCCGGTCAGAAAGGCATAATGCGCAAGCCGAGGATCAGCTCGATCCCCCTCTACGTGCTGCCGA
* *
25773765 TCCCGCTATCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGCGGGACGTGGAATGTACTCCGTAT
326 TCCCGCTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGCGGGACGTGGAATGTACTCCATAT
* * * * *
25773830 GCCTCAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATTAGAGAGGCAGAATGCGTAAG
391 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGATCAGAGAGGCAGAATGCGCAAG
*
25773895 TCAGGGATCAACACGATCCCCCCTGTGTGCTACCGATCCTACTACCGTAACCCTCGATTCGGTCT
456 TCAGGGATCAACACGATCCCCCCTGTGTGCTACCGATCCTACTACCGCAACCCTCGATTCGGTCT
*
25773960 GATCTTAGACTGAGAATGAACTCTGTAT
521 GATCTTAGACTGAGAATGAACTCCGTAT
**
25773988 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
25774053 CCGA
66 CCGA
25774057 TCGTAGAGGC
Statistics
Matches: 559, Mismatches: 55, Indels: 10
0.90 0.09 0.02
Matches are distributed among these distances:
548 227 0.41
551 2 0.00
552 329 0.59
553 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (548 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCAGAGAGGCAAAATGCACAAGCCAGGGATCGGCTCGATCCCCCTTACGTGCTGCCGATCC
TGCTGTCGCAACCCTCAATCTGATCCAATCTTAAAATGGGAATGAACTCCGTATGCTTAGACTTT
GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGCCGACCGAAAA
GGCCGGTCAGAAAGGCATAATGCGCAAGCCGAGGATCAGCTCGATCCCCCTCTACGTGCTGCCGA
TCCCGCTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGCGGGACGTGGAATGTACTCCATAT
GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGATCAGAGAGGCAGAATGCGCAAG
TCAGGGATCAACACGATCCCCCCTGTGTGCTACCGATCCTACTACCGCAACCCTCGATTCGGTCT
GATCTTAGACTGAGAATGAACTCCGTAT
Found at i:25773979 original size:364 final size:364
Alignment explanation
Indices: 25773457--25774161 Score: 912
Period size: 364 Copynumber: 1.9 Consensus size: 364
25773447 CTGGGGATGA
* * *
25773457 ACTCCGAATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGG
1 ACTCCGAATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGA
* ** ** * * ** **
25773522 ATGCACAAGTCGGGGATCGGCTTGATCCCCCTTACGTGCTGCCGATCCTGTTGTCGCAACCCTCG
66 ATGCACAAGTCAGGGATCAACACGATCCCCCCTACGTGCTACCGATCCTACTACCGCAACCCTCG
* **
25773587 ATCTGATCCAATCTTAAAATGGGAATGAACTCCGTATGCTTAGACTTTGGATGAACTCCGTATGC
131 ATCTGATCCAATCTTAAAATGAGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGC
* * * * *
25773652 CTAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAGCCGACCGAAAAGGTCGGTCGGAAAGGCA
196 CTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAAAGGCCAGCCGGAAAGGCA
* * * * **
25773717 TAATGCGTAAGCC-GAGGATCAGCTCGATCCCCCTCTACGTGCTGCCGATCCCGCTATCGGTCCT
261 TAATGCATAAGCCAG-GGATCAGCTCGATCCCCCTCTACATGCTACCGATCCCGCTACCAATCCT
25773781 GCTGCCACAACCCTCGGTCCGGCTGCGGGACGTGGAATGT
325 GCTGCCACAACCCTCGGTCCGGCTGCGGGACGTGGAATGT
* * **
25773821 ACTCCGTATGCCTCAG-CTAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATTAGAGAGGCAG
1 ACTCCGAATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAG
** ** *
25773885 AATGCGTAAGTCAGGGATCAACACGATCCCCCCTGTGTGCTACCGATCCTACTACCGTAACCCTC
65 AATGCACAAGTCAGGGATCAACACGATCCCCCCTACGTGCTACCGATCCTACTACCGCAACCCTC
* ** * * *
25773950 GAT-TCGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTAT
130 GATCT-GATCCAATCTTAAAATGAGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTAT
* * * * *
25774014 GCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTCAGCCGATCGTAGAGGCCAGCCGGAGAGG
194 GCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAAAGGCCAGCCGGAAAGG
* *
25774079 CATAATGCATAAGCCAGGGATCAGCTCGATCCCCCTCTGCATGCTACCGATCTCGCTACCAATCC
259 CATAATGCATAAGCCAGGGATCAGCTCGATCCCCCTCTACATGCTACCGATCCCGCTACCAATCC
25774144 TGCTGCCACAACCCTCGG
324 TGCTGCCACAACCCTCGG
25774162 GCAAAACAAA
Statistics
Matches: 288, Mismatches: 50, Indels: 6
0.84 0.15 0.02
Matches are distributed among these distances:
363 2 0.01
364 285 0.99
365 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (364 bp):
ACTCCGAATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGA
ATGCACAAGTCAGGGATCAACACGATCCCCCCTACGTGCTACCGATCCTACTACCGCAACCCTCG
ATCTGATCCAATCTTAAAATGAGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGC
CTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAAAGGCCAGCCGGAAAGGCA
TAATGCATAAGCCAGGGATCAGCTCGATCCCCCTCTACATGCTACCGATCCCGCTACCAATCCTG
CTGCCACAACCCTCGGTCCGGCTGCGGGACGTGGAATGT
Found at i:25773992 original size:26 final size:26
Alignment explanation
Indices: 25773963--25774015 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25773953 TCGGTCTGAT
*
25773963 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
25773989 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
25774015 C
1 C
25774016 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:25775614 original size:26 final size:26
Alignment explanation
Indices: 25775578--25775630 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25775568 TTGGTCTGAT
*
25775578 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
25775604 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
25775630 C
1 C
25775631 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:25776412 original size:158 final size:158
Alignment explanation
Indices: 25775874--25776442 Score: 484
Period size: 158 Copynumber: 3.6 Consensus size: 158
25775864 TTAGACATAA
* * * * * * *
25775874 AATGAACTCCATATGCCTAAGCCAACCTATGAAACGAGCATGCGGGCGCTCAGCCAGCCAGAGAG
1 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCAACCGGCCGGAGAG
* * * * * *
25775939 GTAGAATACACAAGCCGGGGATCGACCCGGTCCC-CCTACGTGCTGTCGATCCTGCTGCCACAAC
66 GCAAAATACGCAAGCCAGGGATCGGCCCGGTCCCTCTTACGTGCTGTCGATCCTGCTGCCACAAC
* * * *
25776003 ACTCGGTCCAGTCCGATCTTAGACTGGG
131 CCTCGATCCGGTCTGATCTTAGACTGGG
* * * * * * *
25776031 AATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCATACAGGCACTGAACAGGTCGAAAGA
1 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCAACCGGCCG-GAGA
* * * * * * ** *
25776096 GGCATAATGCGCAAGTCAGGGATCGGCCCGATCCCTCTCTGCATGCTACCGAT-CTCGCTACCAC
65 GGCAAAATACGCAAGCCAGGGATCGGCCCGGTCCCTCT-TACGTGCTGTCGATCCT-GCTGCCAC
* * * **
25776160 AACCCCCGAT-TGGGCTGGGGCTTAGACAT-GG
128 AACCCTCGATCCGGTCT-GATCTTAGAC-TGGG
** * * * * * * *
25776191 AATGGGCTCCCTATGCCTAAGTCAAACCACGAAAC-AGACGTGCGGACACTCAGCTGGCCGGAGA
1 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG-CATGCGGGCACTCAACCGGCCGGAGA
* * * **
25776255 GGTAAAATGCGCAAGCCAGGGATCGGCCCGGTCCCTCTTACGTGCTGTCGATCCTGCTGTCGTAA
65 GGCAAAATACGCAAGCCAGGGATCGGCCCGGTCCCTCTTACGTGCTGTCGATCCTGCTGCCACAA
*
25776320 CCCTCAATCCGGTCTGATCTTAGACTGGG
130 CCCTCGATCCGGTCTGATCTTAGACTGGG
* * * ** **
25776349 AATCAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAACCGGTTGGAGAG
1 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCAACCGGCCGGAGAG
*
25776414 GCAAAATACGTAAGCC-GAGGATCGGCCCG
66 GCAAAATACGCAAGCCAG-GGATCGGCCCG
25776443 ACCGCACGCA
Statistics
Matches: 313, Mismatches: 87, Indels: 23
0.74 0.21 0.05
Matches are distributed among these distances:
157 49 0.16
158 134 0.43
159 52 0.17
160 77 0.25
161 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.18
Consensus pattern (158 bp):
AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCAACCGGCCGGAGAG
GCAAAATACGCAAGCCAGGGATCGGCCCGGTCCCTCTTACGTGCTGTCGATCCTGCTGCCACAAC
CCTCGATCCGGTCTGATCTTAGACTGGG
Found at i:25777090 original size:26 final size:26
Alignment explanation
Indices: 25777039--25777091 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
25777029 CTGGTCTGAT
* *
25777039 CTTAGATTGGGACTGAACTCTATATG
1 CTTAGATGGGGACTGAACTCCATATG
*
25777065 CTTAGACTGGGGA-TGAACTCCGTATG
1 CTTAGA-TGGGGACTGAACTCCATATG
25777091 C
1 C
25777092 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATGGGGACTGAACTCCATATG
Found at i:25778673 original size:26 final size:26
Alignment explanation
Indices: 25778637--25778689 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25778627 CCTATCTGAT
*
25778637 CTTAGACTAGGAATGACCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
25778663 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25778689 C
1 C
25778690 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25778853 original size:183 final size:184
Alignment explanation
Indices: 25778478--25778895 Score: 488
Period size: 183 Copynumber: 2.3 Consensus size: 184
25778468 TCCGGCTGGA
* * * * *
25778478 GCTTAGAC-ATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCTGGCACTTA
1 GCTTAGACTA-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCACTTA
* ** *
25778542 GCCGATCGGAGTGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCTCCTGCATGCTACTGATT
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCTCCTGCATGCTACTGATC
* * * *
25778607 CTGCTACCGTAACCCTCGATCCTATCTGATCTTAGACTAGGAATGACCTCCGTAT
130 CTACTACCGTAACCCTCAATCCTATCTGATCTTAGACTAGGAATGAACTCCATAT
* * *
25778662 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGC-GTTCA
1 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCACTT-A
* * ** * * *
25778726 GCCGGTCGGAGAGGCAGAATGCGTAAGCCAGGG-TCGGCTTGGTCCC-CTCTGCGTGCTGCTGAT
65 GCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCTC-CTGCATGCTACTGAT
* * *
25778789 CCTACTGCCAG-AACCCTCAATCC-AGTCTGATCTTAGATTGGGAATGAACTCCATAT
129 CCTACTACC-GTAACCCTCAATCCTA-TCTGATCTTAGACTAGGAATGAACTCCATAT
* * *
25778845 GCTTAGACTGGGGATGAACTCTGTATGACTAAGTCAACCCACGAAACAAGC
1 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGC
25778896 ATGCGGGTGA
Statistics
Matches: 198, Mismatches: 31, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
182 2 0.01
183 115 0.58
184 80 0.40
185 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (184 bp):
GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCACTTAG
CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCTCCTGCATGCTACTGATCC
TACTACCGTAACCCTCAATCCTATCTGATCTTAGACTAGGAATGAACTCCATAT
Found at i:25779009 original size:551 final size:549
Alignment explanation
Indices: 25778133--25780281 Score: 2161
Period size: 551 Copynumber: 3.9 Consensus size: 549
25778123 ATGTACTTTG
* * *
25778133 TATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGT
1 TATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGT
* * ** * * * * **
25778198 AAGTCAGGGATC-GACACGATCCCCCCTTTGTGCTACCGATCCTACTG-CTGTAACCTTCGATTT
66 AAGCCAGGGATCAG-CCCGATCCCCCCTGCGTGCTGCTGATCCTACTGTC-GTAACCCTCAATCC
* * * *
25778261 GGTCTGATTTTAGACTGGGAATGAACTTCGA-ATGCTTAGACTGGGGATGAACTCTATATGCCTA
129 AGTCTGATCTTAGACTGGGAATGAAC-TCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTA
* * * * *
25778325 AGCCAACCCATGAAATGAGCGTACGGACGCTCAGTAGGCCGGAGAGGCCGACCGAAGAGGCATAA
193 AGTCAACCCATGAAACGAGCATACGGGCGCTCAGT-GG-CGGAGAGGCCGACCGGAGAGGCATAA
* * * * * * * * *
25778390 TGCGCAAGCCGAGTATCAGCCCGGTCCTCCTCTGCCTACTGCCGATACT-ACTACTGGACATGCT
256 TGCGCAAGTCGAGGATCAGCCCGGTCCCCCTCTACCTGCTGCCGAT-CTCACTGCCGGTCCTGCT
*
25778454 GCCACAACCCCCGGTCCGGCT-GGAGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCC
320 GCCACAACCCTCGGTCCGGCTAGG-GCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCC
* * * * * * * * *
25778518 ACGAAACAAGCGTGCTGGCACTTAGCCGATCGGAGTGGCAGAATGCGCAAGCTGGGGATCGGCCC
384 ACGAAACGAGCGTGCGGGCGCTCAGTCG-GCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC
* * * ** *
25778583 GATCCCTCCTGCATGCTACTGATTCTGCTACCGTAACCCTCGATCCTATCTGATCTTAGACTAGG
448 GATCCCCCCTGCGTGCTACTGATTCTGCTGCCACAACCCTCGATCCTGTCTGATCTTAGACTAGG
* * *
25778648 AATGACCTCCGTATGCTTAGACTAGGGATGAACTCCG
513 AATGAACTCCATATGCTTAGACTAGGGATGAACTCCA
* * * * *
25778685 TATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGTTCAGCCGGTCGGAGAGGCAGAATGCGT
1 TATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGT
* ** * * *
25778750 AAGCCAGGG-TCGGCTTGGTCCCCTCTGCGTGCTGCTGATCCTACTGCCAG-AACCCTCAATCCA
66 AAGCCAGGGATCAGCCCGATCCCCCCTGCGTGCTGCTGATCCTACTGTC-GTAACCCTCAATCCA
* *
25778813 GTCTGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGACTAAG
130 GTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAG
* * * * * * * *
25778878 TCAACCCACGAAACAAGCATGCGGGTGATCAGTTGGTCGGAGAGGTCGACCAGAGAGGCATAATA
195 TCAACCCATGAAACGAGCATACGGGCGCTCAG-TGG-CGGAGAGGCCGACCGGAGAGGCATAATG
* * * * ** * * * *
25778943 CGCAAGTCGAGGATCAACCCGATCCCCCTCTGCGTGCTGTTGATCTCGCTCCCAGT-CTCACTGC
258 CGCAAGTCGAGGATCAGCCCGGTCCCCCTCTACCTGCTGCCGATCTCACTGCCGGTCCT-GCTGC
* * * * * * *
25779007 CACAACCCTCGGTTCGACTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAGGCCAACCCATG
322 CACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACG
* * * * *
25779072 AAACGAGTGTGCGGGCGCTCAGTCGGGCAAAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGT
387 AAACGAGCGTGCGGGCGCTCAGTC-GGCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT
* * * * *
25779137 CCCCCCTGTGTGCTGCCGATCCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTAGGAAT
451 CCCCCCTGCGTGCTACTGATTCTGCTGCCACAACCCTCGATCCTGTCTGATCTTAGACTAGGAAT
* *
25779202 GAACTTCATATGCTTAGACTGGGGATGAACTCCA
516 GAACTCCATATGCTTAGACTAGGGATGAACTCCA
* * * * * **
25779236 TATGCCTAAGTCAACCCACGAAACAAACGTGCGGGTGCTCAGCCGACCAGAGAGGCAGGATGCAC
1 TATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGT
* * * *
25779301 AAGCCGGGGATCAGCCC-AGTCCCCCCTACGTGCTGCTGATCCTGCTGTCGTAACCCTCGATCC-
66 AAGCCAGGGATCAGCCCGA-TCCCCCCTGCGTGCTGCTGATCCTACTGTCGTAACCCTCAATCCA
* *
25779364 GATCTGATCTTAGACTGAGAATGAACTCCATATGCTTAGACT-GGGATGAACTCTGTAAGCCTAA
130 G-TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAA
* * ** * * * *
25779428 GTCAACCCATGAAATGAGCGTACGGGCGCTCAACCGACTGGAGAAGTC-AGTCGGAGAGGCATAA
194 GTCAACCCATGAAACGAGCATACGGGCGCTC-AGTGGC-GGAGAGGCCGA-CCGGAGAGGCATAA
* ** * *
25779492 TGCGCAAG-CCAGGGATCAGCTTGGTCCCCCTCTACCTGCTACCGAT-TCCACTGCTGGTCCTGC
256 TGCGCAAGTCGA-GGATCAGCCCGGTCCCCCTCTACCTGCTGCCGATCT-CACTGCCGGTCCTGC
* **
25779555 TGCCACAACCCTCGGTCTGGCTAGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCC
319 TGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCC
* * * *
25779620 ACGAAATGAGCGTGCGGGCGCTCAGTCGGCTGAAGAGGTAGAATACGCAAGCCAGGGATCGGCCC
384 ACGAAACGAGCGTGCGGGCGCTCAGTCGGC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC
* *
25779685 GATCCCCCCTGCGTGCTACTGA-TCTTGCTGCCACAACCCTCAAT-CTGGTCTGATCTTAGA-TG
448 GATCCCCCCTGCGTGCTACTGATTC-TGCTGCCACAACCCTCGATCCT-GTCTGATCTTAGACTA
*
25779747 GGAATGAACTCTATATGCTTAGACTA-GGATGAACTCCA
511 GGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCA
** * * * * * * *
25779785 TATGCCTAAGTCAACCCATAAAATGAATGTGCGGGCACTCAACCGATTGGAGAGGCAGAATGTGA
1 TATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGT
* * ** *
25779850 AAG-CTGAGGATTAGCCCGATCCCCCCTGCGTGCTGCTGATCCTGTTGTCGCAACCCTCAATCCA
66 AAGCCAG-GGATCAGCCCGATCCCCCCTGCGTGCTGCTGATCCTACTGTCGTAACCCTCAATCCA
* * *
25779914 ATCTAATCTTAGACTGGGAATGAACTCCATACGCTTAGACTGGGGATGAACT-TCGTATGCCTAA
130 GTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCT-GTATGCCTAA
** * * *
25779978 GTCAACCCATGAAACGAGTGTGCGGGCG--C--T--C----A-GCCGGCCGGAGAGGTATAATGC
194 GTCAACCCATGAAACGAGCATACGGGCGCTCAGTGGCGGAGAGGCCGACCGGAGAGGCATAATGC
* * * ** * * *
25780032 ACAAGTCGAGGATCAGTCCGTTCCCCCTCTATGTGCTGCCGATCCCGCTGCCGGTCCTGCTACCA
259 GCAAGTCGAGGATCAGCCCGGTCCCCCTCTACCTGCTGCCGATCTCACTGCCGGTCCTGCTGCCA
* *
25780097 CAACCCTCGGTCCGGCTAGGGATTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAA
324 CAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAA
* ** * ** * *
25780162 ACGAGCGTGCGGGTGCTCAGTCAACTGAAGAGGCAGAATGTGCAAGCCAAGGATCAGCTCGATCC
389 ACGAGCGTGCGGGCGCTCAGTCGGC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCC
* * * * * *
25780227 CACCTACGTGCTA-TCGATCCTGCTGTCGA-AACCCTCAATCC-GATTTGATCTTAGA
453 CCCCTGCGTGCTACT-GATTCTGCTG-CCACAACCCTCGATCCTG-TCTGATCTTAGA
25780282 ATGAGGGTGA
Statistics
Matches: 1321, Mismatches: 242, Indels: 83
0.80 0.15 0.05
Matches are distributed among these distances:
536 2 0.00
537 219 0.17
538 7 0.01
543 1 0.00
548 3 0.00
549 152 0.12
550 85 0.06
551 696 0.53
552 156 0.12
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (549 bp):
TATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGT
AAGCCAGGGATCAGCCCGATCCCCCCTGCGTGCTGCTGATCCTACTGTCGTAACCCTCAATCCAG
TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGT
CAACCCATGAAACGAGCATACGGGCGCTCAGTGGCGGAGAGGCCGACCGGAGAGGCATAATGCGC
AAGTCGAGGATCAGCCCGGTCCCCCTCTACCTGCTGCCGATCTCACTGCCGGTCCTGCTGCCACA
ACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGTCGGCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC
CTGCGTGCTACTGATTCTGCTGCCACAACCCTCGATCCTGTCTGATCTTAGACTAGGAATGAACT
CCATATGCTTAGACTAGGGATGAACTCCA
Found at i:25779229 original size:26 final size:26
Alignment explanation
Indices: 25779188--25779240 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25779178 CCGGTCTGAT
*
25779188 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
25779214 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
25779240 C
1 C
25779241 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:25779344 original size:184 final size:183
Alignment explanation
Indices: 25779029--25779465 Score: 509
Period size: 184 Copynumber: 2.4 Consensus size: 183
25779019 TTCGACTGGG
* * ** * * * **
25779029 GCTTAGACGTGGAATGTACTCTGTATGCCTAGGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGAC-TGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACAAACGTGCGGGCGCTCAG
* ** ** * **
25779094 TCGGGCAAAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTGCCGATCC
65 CCGACCAAAGAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCC
* *
25779159 TGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACT-AGGAATGAACTTCATAT
130 TGCTGCCACAACCCTCGATCCGATCTGATCTTAGACTGA-GAATGAACTCCATAT
* *
25779213 GCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACAAACGTGCGGGTGCTCAG
1 GCTTAGACT-GGGATGAACTCCATATGCCTAAGTCAACCCATGAAACAAACGTGCGGGCGCTCAG
* * *
25779278 CCGACCAGAGAGGCAGGATGCACAAGCCGGGGATC-AGCCCAGTCCCCCCTACGTGCTGCTGATC
65 CCGACCAAAGAGGCAGAATGCACAAGCCGGGGATCGA-CCCAGTCCCCCCTACGTGCTGCCGATC
* **
25779342 CTGCTGTCGTAACCCTCGATCCGATCTGATCTTAGACTGAGAATGAACTCCATAT
129 CTGCTGCCACAACCCTCGATCCGATCTGATCTTAGACTGAGAATGAACTCCATAT
** * ** * * *
25779397 GCTTAGACTGGGATGAACTCTGTAAGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGCTCAAC
1 GCTTAGACTGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACAAACGTGCGGGCGCTCAGC
25779462 CGAC
66 CGAC
25779466 TGGAGAAGTC
Statistics
Matches: 213, Mismatches: 37, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
183 52 0.24
184 160 0.75
185 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (183 bp):
GCTTAGACTGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACAAACGTGCGGGCGCTCAGC
CGACCAAAGAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCCTACGTGCTGCCGATCCT
GCTGCCACAACCCTCGATCCGATCTGATCTTAGACTGAGAATGAACTCCATAT
Found at i:25780023 original size:184 final size:182
Alignment explanation
Indices: 25779597--25780023 Score: 514
Period size: 182 Copynumber: 2.3 Consensus size: 182
25779587 TGTGGAATGT
* * * * * *
25779597 ACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCTGAAGAGGTAGA
1 ACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAGCCGGCTGGAGAGGCAGA
* * *
25779662 ATACGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTACTGATCTTGCTGCCACAACCCTCA
66 ATACGAAAGCCAGGGATCAGCCCGATCCCCCCTGCGTGCTACTGATCCTGCTGCCACAACCCTCA
*** * * *
25779727 ATCTGGTCTGATCTTAGATGGGAATGAACTCTATATGCTTAGACTAGGATGA
131 ATCCAATCTAATCTTAGATGGGAATGAACTCCATACGCTTAGACTAGGATGA
* * * * * **
25779779 ACTCCATATGCCTAAGTCAACCCATAAAATGAATGTGCGGGCACTCAACCGATTGGAGAGGCAGA
1 ACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAGCCGGCTGGAGAGGCAGA
** * * * * * *
25779844 ATGTGAAAG-CTGAGGATTAGCCCGATCCCCCCTGCGTGCTGCTGATCCTGTTGTCGCAACCCTC
66 ATACGAAAGCCAG-GGATCAGCCCGATCCCCCCTGCGTGCTACTGATCCTGCTGCCACAACCCTC
*
25779908 AATCCAATCTAATCTTAGACTGGGAATGAACTCCATACGCTTAGACTGGGGATGA
130 AATCCAATCTAATCTTAGA-TGGGAATGAACTCCATACGCTTAGACT-AGGATGA
* * *
25779963 ACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAGAGG
1 ACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAGCCGGCTGGAGAGG
25780024 TATAATGCAC
Statistics
Matches: 201, Mismatches: 41, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
181 2 0.01
182 117 0.58
183 25 0.12
184 57 0.28
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (182 bp):
ACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAGCCGGCTGGAGAGGCAGA
ATACGAAAGCCAGGGATCAGCCCGATCCCCCCTGCGTGCTACTGATCCTGCTGCCACAACCCTCA
ATCCAATCTAATCTTAGATGGGAATGAACTCCATACGCTTAGACTAGGATGA
Found at i:25780654 original size:26 final size:26
Alignment explanation
Indices: 25780618--25780670 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25780608 TCGGACTGAT
*
25780618 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
25780644 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
25780670 C
1 C
25780671 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:25782382 original size:26 final size:26
Alignment explanation
Indices: 25782346--25782398 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25782336 CCAGTCCAAT
*
25782346 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
25782372 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
25782398 C
1 C
25782399 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:25782516 original size:21 final size:21
Alignment explanation
Indices: 25782475--25782516 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
25782465 GGGATCAGCT
*
25782475 CGATCCCCCTATGCGTGCTGC
1 CGATCCCCCTATGCGTCCTGC
*
25782496 CGATCCCGCTACTG-GTCCTGC
1 CGATCCCCCTA-TGCGTCCTGC
25782517 TGCCACAACC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.10, C:0.43, G:0.24, T:0.24
Consensus pattern (21 bp):
CGATCCCCCTATGCGTCCTGC
Found at i:25782804 original size:354 final size:353
Alignment explanation
Indices: 25781669--25783808 Score: 1340
Period size: 347 Copynumber: 6.0 Consensus size: 353
25781659 TCTGGCTGTG
* * * * * *
25781669 GCTTAGAC-GTGGAATGTACTCCGTATGCCTAGGCCAACCCATGAAACGAGCGT-ACGGGCGCTC
1 GCTTAGACTG-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGA--GGCGCTC
* * ** * * * * * * *
25781732 AGTCGATCAAAGAGACATAATGTGCAAGCCGGGGATCAACCTGATCCCCCTCTGCATGCTACCGA
63 AGCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCC-GATCCCCCTATGCGTGCTGCCGA
* * ** * **
25781797 TCCAGCTGCCAGTCTTA-TGGCCACAACCCTCGGTCCGACTGGGGCTTAGATGTGGAATGTACTC
127 TCCCGCTACTGGTCCTACT-GCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTC
* * * * * * *
25781861 TGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGTCGGCC-GAAAGGGCAGAATG
191 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGA-GGTAGAATG
* * ** * * * *
25781925 CGCAAGCTGGGGATC-AATCCAGTCCCCCCTGCGTGCTGTCGATCTTGCTG-TCGCAACCCTCTA
255 TGCAAGCTAGGGATCGGCTCGA-TCCCCCCTGCGTGCTGCCGATCCTGCTGCT-GCAACCCTCAA
** *
25781988 TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
318 TCCGGTCTGATCTTAGACTGGGAATGAACTTCGTAT
* * **** ** *** ** * * ***
25782024 GCTTAGACTGGCGATCCAA-TAAAAATG----AG-CGTGCGGGCG-CTC-AGC-CG-GTCGGAGA
1 GCTTAGACTGGGGAT-GAACTCCGTATGCCTAAGTC-AACCCACGAAACAAGCGTGAGGCGCTCA
* * * * *
25782079 GGCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCAGTTCCCCTCTACGTGCTACCGA
64 -GCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCGA-TCCCCCTATGCGTGCTGCCGA
* * * * * * * *
25782144 TCCCGTTACCGGTCCTACTACCACAACGCTCTGTCCGGCAGGGGCTTAGACGTGGAATGTACTCC
127 TCCCGCTACTGGTCCTACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCC
* * * * * * * * * **
25782209 GTATGCCTAAGCCAACCTACAAAACGAGCATGCGGGTGCTCAACCGACCGGAGAAGCAAAATGCA
192 GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGTG
* ** * * * * * * * * *
25782274 TAAGCCGGGGATCAGCTTGATCCCCCCTGTGTGCTGCCAATCCTACTACCGCAACCCTCGATCCA
257 CAAGCTAGGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAATCCG
** *
25782339 GTCCAATCTTAGACTGGGGATGAACTTCGTAT
322 GTCTGATCTTAGACTGGGAATGAACTTCGTAT
* * *
25782371 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGT-ACGGGCACTCA
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGA--GGCGCTCA
* **
25782435 GCCGACCAGAGAGGCAGGATGCGCAAGTCGGGGATCAGCTCGATCCCCCTATGCGTGCTGCCGAT
64 GCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAGC-CGATCCCCCTATGCGTGCTGCCGAT
* * * * *
25782500 CCCGCTACTGGTCCTGCTGCCACAACCTTCAGTCCGACTGGGGCTTAAACATGGAATTTACTCCG
128 CCCGCTACTGGTCCTACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCG
* * * * ** * *
25782565 TATGCTTAAGCCAACCCACGAAACAAGCGTACAGGCGCTCAGCCGGCCGGAGAGCCAAAATTTGC
193 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGTGC
* * * * * *
25782630 AAGCTAGGGATTGGCTCGGTCCCTCCTACGTG-TGCCGATCCTACTGCTGCAACCCTTAATCCGG
258 AAGCTAGGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAATCCGG
* ** *
25782694 TCCGATCTTAGACTATGAATGAACTTTGTAT
323 TCTGATCTTAGACTGGGAATGAACTTCGTAT
* * *
25782725 GCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAATCCATGAAACAAGCGTGCAGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTG-AGGCGCTCAG
* * * * ** * * * * * *
25782790 CTGGCCGGAGAGGCATAATACGTAAG-CTGAAGATCAGCCCAGTCCCTCTCTGTGTGCTACCAAT
65 CCGACCGGAGAGGCATAATGCGCAAGTC-GGGGATCAGCCGA-TCCCCCTATGCGTGCTGCCGAT
* * * *
25782854 CCCGCTACCGATCCTACTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCA
128 CCCGCTACTGGTCCTACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCG
* * * * * **
25782919 TATGCTTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACTGATCGGAGAGGTAGAATGTGC
193 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGTGC
* * ** * * *
25782984 AAG-TCGAGGATCGGCCCGATCGGCCCTGCGTGCTACCGATCCTGCTGTTGCAACCCTCGATCCG
258 AAGCTAG-GGATCGGCTCGATCCCCCCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAATCCG
* *
25783048 GTCTGATCTTAGATTGGGAATGAACTTTGTAT
322 GTCTGATCTTAGACTGGGAATGAACTTCGTAT
** * * * * * *
25783080 GCTTAGACTGGGGATGAACTTTGTATGCTTAGACTGGGGATGAACTC-TGTATGAATAA--GTCA
1 GCTTAGACTGGGGATGAACTCCGTATGCCTA-A-----G-TCAACCCACG-A--AACAAGCGTGA
* * * ** * * * *
25783142 -ACCCATGAAACGAGCGTGAGAGTGC-TCA-GCCGACCAGAG-AGGCAGGATGCGCAAGTCGAGG
56 GGCGC-TCAGCCGACCG-GAGAG-GCATAATG-CG--CA-AGTCGG--GGAT---C-AG-C--CG
* * * * * * * * ** *
25783203 ATCAGCCCGATCCCCCTATGCGTGCTG-T--CGATCCCGTTGCTGGTCCTGCTGCCACAACCCTC
105 ATC-CCCCTAT---GC-GTGC-TGCCGATCCCGCT-AC--TGGTCCT---ACTGCCACAACCCTC
* * *
25783265 GGTCCAACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTATGTCAACCCACGAAACGAGCGT
158 GGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
* * * * * * *
25783330 AC-GGCACTCAGCCGGTCGGAGAGGTAGAAT-T-CATAAGCTAGGGATCGACCCGGTCCCCCCTA
223 GCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGTGC--AAGCTAGGGATCGGCTCGATCCCCCCTG
* * * *
25783392 CGTGTTGCCGATCCTGCTGCTGCAACCCTCAATTCGGTCTGATCATAGACTGTGAATGAACTTCG
286 CGTGCTGCCGATCCTGCTGCTGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTTCG
25783457 TAT
351 TAT
*
25783460 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG--A-AA---TGA-GCGTTCAG-
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGAGGCGCTCAGC
* * * * * * **
25783517 CTAGCCGGAGAGGCATAATACGCAAGCCGGGGATCAGCCCAGTCCCTCTCTGCGTGCTGTGGATC
66 CGA-CCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCGA-TCCCCCTATGCGTGCTGCCGATC
* * * * * * * *
25783582 CCGCT-GTCGATCCTACTGCCATAACCCTCCGTCTGGCTAGGGCTTAGACATGGAATGTACTTCG
129 CCGCTACT-GGTCCTACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCG
* * * * *
25783646 TATGCCTAAGCTAACCCATGAAACGAGCGTGTGGGTGCTCAGTCGGCCGGAGAGGTAGAATGTGC
193 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGTGC
* * * *
25783711 AAGCTGGGGATCGGCTCGATCCCCCCTGCGTGCTGCCAATCCTGTTGGTGCAACCCTCAATCCGG
258 AAGCTAGGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAATCCGG
*
25783776 TCTGATCTTAGACTGGGAATGAACTCCGTAT
323 TCTGATCTTAGACTGGGAATGAACTTCGTAT
25783807 GC
1 GC
25783809 CTAAGTCAAC
Statistics
Matches: 1360, Mismatches: 342, Indels: 174
0.72 0.18 0.09
Matches are distributed among these distances:
346 75 0.06
347 351 0.26
348 8 0.01
349 10 0.01
350 6 0.00
351 9 0.01
352 5 0.00
353 7 0.01
354 285 0.21
355 279 0.21
356 10 0.01
357 2 0.00
358 1 0.00
360 2 0.00
361 13 0.01
362 18 0.01
363 6 0.00
364 8 0.01
365 13 0.01
366 7 0.01
367 3 0.00
368 2 0.00
369 2 0.00
370 2 0.00
371 1 0.00
372 2 0.00
373 9 0.01
374 2 0.00
375 3 0.00
376 1 0.00
377 4 0.00
378 6 0.00
379 2 0.00
380 131 0.10
381 75 0.06
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (353 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGAGGCGCTCAGC
CGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCGATCCCCCTATGCGTGCTGCCGATCCC
GCTACTGGTCCTACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTAT
GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGTGCAAG
CTAGGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCAATCCGGTCT
GATCTTAGACTGGGAATGAACTTCGTAT
Found at i:25783091 original size:26 final size:26
Alignment explanation
Indices: 25783055--25783132 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
25783045 CCGGTCTGAT
* *
25783055 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGACTGGGGATGAACTTTGTATG
25783081 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGGATGAACTTTGTATG
*
25783107 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTTTGTATG
25783133 AATAAGTCAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.35
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTTTGTATG
Found at i:25783466 original size:26 final size:26
Alignment explanation
Indices: 25783437--25783487 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
25783427 GGTCTGATCA
* *
25783437 TAGACTGTGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
25783463 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
25783488 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:25784368 original size:159 final size:157
Alignment explanation
Indices: 25783977--25784405 Score: 405
Period size: 159 Copynumber: 2.7 Consensus size: 157
25783967 TCCATATGCT
* * * *
25783977 TAGACATGGAATGAACTCCGTATGCCTAAGCCAAACAATGAAACGAGCGTGTGGGTGCTCAACCG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGTGCTC-AGCG
* ** * *
25784042 ATCGGAGAGGCAGAATGCGTAAGTCGAGGATCGACCCGATCCCCCCTGCGTACTATCGATCCCGC
65 GTTAGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCCTACGTACTATCGATCCCGC
** * * *
25784107 TACCGTAACCCTCGGTCCAGTCTGATCT
130 TACCACAACCCTCGGTCCAGGCTGAGCA
* * ** * ** * *
25784135 TAGTC-TGTGAATGAACTCCAAATGCAAAAGACAAACCATGAAACGAGCGTGCGGGCACTGAGCC
1 TAGACATG-GAATGAACTCCATATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGTGCTCAGCG
* * * * * *
25784199 GATCGAAGAGGCATAATGCGTAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTATCGGTCCT
65 GTTAG-AGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCC-CTACGTACTATCGATCCC
* * *
25784264 GCTGCCACAACCCTCGGT-CTGGCTGGGGCA
128 GCTACCACAACCCTCGGTCCAGGCT-GAGCA
* * * * *
25784294 TAGACATGGAATGAGCTCCTTATGCCTAAGCCAACCCATAAAACGGGCGTGCGGGTGCTCAGTCG
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGTGCTCAG-CG
* * * *
25784359 GTTAGAGAGGTAGAATGGGCAAGCC-AGGGATCGACCCGGTCCCCCCT
65 GTTAGAGAGGCAGAATGCGTAAGCCGA-GGATCGACCCGATCCCCCCT
25784406 GCATGCTGCC
Statistics
Matches: 212, Mismatches: 52, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
157 5 0.02
158 91 0.43
159 110 0.52
160 6 0.03
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.18
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCATATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGTGCTCAGCGG
TTAGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCCTACGTACTATCGATCCCGCT
ACCACAACCCTCGGTCCAGGCTGAGCA
Found at i:25784852 original size:26 final size:26
Alignment explanation
Indices: 25784816--25784868 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25784806 CCGATCTAAT
25784816 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25784842 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25784868 C
1 C
25784869 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25786117 original size:13 final size:13
Alignment explanation
Indices: 25786099--25786126 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
25786089 CGGGCGCTCA
25786099 GCCGGTCGGAGAG
1 GCCGGTCGGAGAG
25786112 GCCGGTCGGAGAG
1 GCCGGTCGGAGAG
25786125 GC
1 GC
25786127 ATAATGCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.25, G:0.54, T:0.07
Consensus pattern (13 bp):
GCCGGTCGGAGAG
Found at i:25786406 original size:26 final size:26
Alignment explanation
Indices: 25786377--25786429 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25786367 CCAATCCGAT
*
25786377 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATAAACTCCGTATG
* *
25786403 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACAGGGAATAAACTCCGTATG
25786429 C
1 C
25786430 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATAAACTCCGTATG
Found at i:25787775 original size:26 final size:26
Alignment explanation
Indices: 25787734--25787786 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25787724 CCAGTTTTAT
25787734 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
25787760 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25787786 C
1 C
25787787 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25788974 original size:26 final size:26
Alignment explanation
Indices: 25788945--25788995 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
25788935 GGTCTGATCA
*
25788945 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCATATGCT
* *
25788971 TAGACTGGGGATGAACTCCATATGC
1 TAGACTAGGAATGAACTCCATATGC
25788996 CTAAGTCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCT
Found at i:25789513 original size:158 final size:157
Alignment explanation
Indices: 25789148--25789526 Score: 446
Period size: 157 Copynumber: 2.4 Consensus size: 157
25789138 TCAGTCCGGT
* * *
25789148 TGGGGCTTAGACATGGAATGATCTCCGTATGCCTAAGCCAACCCATGAAATGAATGTGCGGGTGC
1 TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGC-GG-GC
* * * * **
25789213 -TTAGCCGATCGAAGAGGCAGAATGCACAAGCCGAAGATCGACCCGGTCCCCCTTACGTGCTGTC
64 ATTAGCCGACCGAAGAGGCAGAATGCACAAGCCGAAGATCGACCCAGTCCCACTTACATGCTACC
** *
25789277 GATCTGCTGCCGCAACCCTCGGTCTGGAC
129 GATCCACTGCCACAACCCTCGGTCTGGAC
** * * *
25789306 T-GATCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCA
1 TGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCA
* * *
25789369 TTGAGCC-AGCCGAAGAGGCATAATGCGCAAGCCGATGATCGACCCAGTCCCACTCTACATGCTA
65 TT-AGCCGA-CCGAAGAGGCAGAATGCACAAGCCGAAGATCGACCCAGTCCCACT-TACATGCTA
25789433 CCGATCCACTGCCACAACCCTCGGTCTGG-C
127 CCGATCCACTGCCACAACCCTCGGTCTGGAC
* * *
25789463 TGGGGCTTAGACATGG-ATAGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCA
1 TGGGGCTTAGACATGGAAT-GAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCA
25789527 CTCAATCGAC
Statistics
Matches: 185, Mismatches: 28, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
155 2 0.01
156 6 0.03
157 94 0.51
158 82 0.44
159 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCAT
TAGCCGACCGAAGAGGCAGAATGCACAAGCCGAAGATCGACCCAGTCCCACTTACATGCTACCGA
TCCACTGCCACAACCCTCGGTCTGGAC
Found at i:25789828 original size:26 final size:26
Alignment explanation
Indices: 25789799--25789851 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25789789 CCGGTCCGAT
*
25789799 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25789825 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25789851 C
1 C
25789852 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25790929 original size:159 final size:158
Alignment explanation
Indices: 25790545--25790929 Score: 341
Period size: 158 Copynumber: 2.4 Consensus size: 158
25790535 AGCTCCGTAT
* * ** * *
25790545 GCTTAGACATGGAATGAACTCTATATGCCTAAGCTAACTAACGAAACGAGA-ATGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGCTCA
** * * * * *
25790609 ACCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACTCGGTCCCCCCTACGTGCTGTCGATC
65 GTCGACCGAAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTGTCAATC
* ** * *
25790674 CTGCTGCTGCAACCTTTGGTCCAGTGTGA
130 CTACTGCCACAACCCTCGGTCCAGTGTGA
* * * * * * * **
25790703 TCTTAGA-TTGGGAATGAACTTCGTATGCATAAGTCAACCCA-GAAAAC-GAGCGTACGGGTACT
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACG-AAACGGA-CGTGCGGGCGCT
* * * * *
25790765 GAGTCGACCGAAGAGGCATAATGTGCAAGCCGAGGATCGGCCCGGTCCCCCTTTGCGTG-TGGTC
63 CAGTCGACCGAAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGGTCCCCC-CTACGTGCT-GTC
* *
25790829 AATCCTACTGCCACAACCCTCGGTCCGGCTG-GG
126 AATCCTACTGCCACAACCCTCGGTCCAG-TGTGA
* *
25790862 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAG
25790927 TCG
66 TCG
25790930 GCCGGAAAGG
Statistics
Matches: 172, Mismatches: 45, Indels: 19
0.73 0.19 0.08
Matches are distributed among these distances:
156 2 0.01
157 2 0.01
158 82 0.48
159 80 0.47
160 6 0.03
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAG
TCGACCGAAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGGTCCCCCCTACGTGCTGTCAATCC
TACTGCCACAACCCTCGGTCCAGTGTGA
Found at i:25791062 original size:25 final size:26
Alignment explanation
Indices: 25791021--25791072 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
25791011 CCGGTTCGAT
25791021 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
25791047 CTTAGA-TGGGGATGAAGTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
25791072 C
1 C
25791073 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.25, C:0.13, G:0.31, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:25791602 original size:368 final size:368
Alignment explanation
Indices: 25790831--25792211 Score: 1527
Period size: 368 Copynumber: 3.8 Consensus size: 368
25790821 GTGTGGTCAA
* * ** *
25790831 TCCTACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAG
1 TCCTACTGCCACAACCCTCGGTCCAGCTAGGGCTTAGATGTGGAATGTA-CTCCGTATGCCTAAG
* * * * * *
25790895 CCAACCCACGAAACG-GACGTGCGGGCGCTCAGTCGGCCGGAAAGGTAAAATGCGCAAG-T-AGG
65 CCAACCCACGAAAAGAG-CGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCTGA-G
* * * * **
25790957 AGATTGGA-CCGGTCCCCTCTGCATGT-CGTCGATCCTGCTGTCGCAACCCTCGATCCGGTTCGA
128 -GA-TCGACCCGGTCCCCCCTACGTGTACG-CGATCCTGCTACCGCAACCCTCGATCCGGTTCGA
* * *
25791020 TCTTAGACTGGGAATGAACTCTGTATGCTTAGA-TGGGGATGAAGTCTGTATGCCTAAGTTAACC
190 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACC
* * * * * *
25791084 CACGAAACGAGCGTGCGGGTGCTCAACCGGCCGAAGAGG-TCGG-CTGGAGAGGCATAATATGCA
255 CACGAAACGAGCGTGCGGGCGCTCAATCGACCGGAGAGGCT-GGTC-GAAGAGGCATAATGTGCA
*
25791147 AGCTC-GAGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCGCTGTCGG
318 AGC-CGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCGCTGTCGG
* * * * * *
25791198 TCTTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGATGTGAAATGTACTCCATATGCCTAAGC
1 TCCTACTGCCACAACCCTCGGTCCAGCTAGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGC
* * ** *
25791263 TAACCCACGAAAAGAGCGTGCGGGTGCTCAGTTGGCCGGAGAGGCAGAATGCGCAAGCTGAGGAT
66 CAACCCACGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCTGAGGAT
* * ** * *
25791328 CGACTCGGTCCCCTCTACGTGCTAC-CGATCCTGCTACCATAACCCTCGATCC-ATTATGATCTT
131 CGACCCGGTCCCCCCTACGTG-TACGCGATCCTGCTACCGCAACCCTCGATCCGGTT-CGATCTT
* * * *
25791391 AGACTGGGAATAAACTCCGTATGTTTAAACTGGGGATGAACTCCGTATGCCTAAGTTAACCCACA
194 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCACG
* *
25791456 AAACGAGCGTACGGGCGCTCAATCGACCGGAGAGGCTGGTCGAAGAAGCATAATGTGCAAGCCGG
259 AAACGAGCGTGCGGGCGCTCAATCGACCGGAGAGGCTGGTCGAAGAGGCATAATGTGCAAGCCGG
* * ** * *
25791521 GGATCAGCTCGGTCCCTTTCTATGTGCTGTCGATCCCACTGTCGG
324 GGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCGCTGTCGG
* * *
25791566 TCCTACTGCCACAACCCTCCGTCCAGCTAGGGCTTAGATGTGGAATGTACTTCGTATGCCCAAGC
1 TCCTACTGCCACAACCCTCGGTCCAGCTAGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGC
** * * * * * * *
25791631 CAACCCACGAAAAGAATGTACGGGTGCTCAGCTGGCTAGAGAGGCAGAATACGTAAGCTGGGGAT
66 CAACCCACGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCTGAGGAT
* * * * *
25791696 AGACCCGGTCCCCCCTA--TGTGCTGTCAATCCTGCTATCGCAACCCTCGATCCGGTCCGATCTT
131 CGACCCGGTCCCCCCTACGTGTAC-G-CGATCCTGCTACCGCAACCCTCGATCCGGTTCGATCTT
* * * * *
25791759 AGACTGAGAATGAACTTCGTATGCTTAGACAGGGGATGAACTCCGTATGCCTAAGTCAACCCATG
194 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCACG
* * * *
25791824 AAACGAGCGTGCGGGCGCTCAATCGATCAGAGAGGCCGGTCGAAGAGGCATAATGTGCAAGCTGG
259 AAACGAGCGTGCGGGCGCTCAATCGACCGGAGAGGCTGGTCGAAGAGGCATAATGTGCAAGCCGG
* ** * * *
25791889 GGATCAGCCCGATCCCCCTCTACATGCTACCGATCTCGCTGCCGA
324 GGATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCGCTGTCGG
* * * *
25791934 TCCTACTGCCACAACCTTTGGACCAGCTAGGGCTTAGATGTGGAATGTACTCCGTATGCTTAAGC
1 TCCTACTGCCACAACCCTCGGTCCAGCTAGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGC
* * * * * *
25791999 CAACCCACGAAATGAGCGTGCGGGCACTCAACCGGCCAGAGAGACAGAATGCGCAAGCCGGGGAT
66 CAACCCACGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCTGAGGAT
* * * * * * *
25792064 CGGCCCAGTCCCCCCT--GTGTACGGCCATCTTGGTGCCGTAACCCTCGATCCGGTTCGATCTTA
131 CGACCCGGTCCCCCCTACGTGTAC-GCGATCCTGCTACCGCAACCCTCGATCCGGTTCGATCTTA
* * * *
25792127 GACTGGGAATGAACTCCATATGCTTAGACTAGGGATG-ACTTCCGTATGCCTAAGTGAACCCATG
195 GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC-TCCGTATGCCTAAGTTAACCCACG
25792191 AAACGAGCGTGCGGGCGCTCA
259 AAACGAGCGTGCGGGCGCTCA
25792212 GCCGACCAAA
Statistics
Matches: 856, Mismatches: 140, Indels: 36
0.83 0.14 0.03
Matches are distributed among these distances:
365 2 0.00
366 9 0.01
367 284 0.33
368 556 0.65
369 5 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (368 bp):
TCCTACTGCCACAACCCTCGGTCCAGCTAGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGC
CAACCCACGAAAAGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCTGAGGAT
CGACCCGGTCCCCCCTACGTGTACGCGATCCTGCTACCGCAACCCTCGATCCGGTTCGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTTAACCCACGAA
ACGAGCGTGCGGGCGCTCAATCGACCGGAGAGGCTGGTCGAAGAGGCATAATGTGCAAGCCGGGG
ATCAGCCCGATCCCCCTCTACGTGCTGTCGATCCCGCTGTCGG
Found at i:25793162 original size:159 final size:159
Alignment explanation
Indices: 25792871--25793329 Score: 465
Period size: 171 Copynumber: 2.8 Consensus size: 159
25792861 AGCTCCGTAT
* * * * * *
25792871 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACAAGCGTGCGGGCACTGAG
1 GCTTAGACATGGAATG-ACTCCATATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAA
* * * * * ** * *
25792936 CCTGCTAAAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCATGCTGCTGGTC
65 CCGGCTAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGT-CCCCTCTGTGTGCTACTGATC
* *
25793001 TCG-A-TGCCACAACCCTCGGTTCGGTTGGG
129 TCGCACTGCCACAACCCTCGGTCCGGCTGGG
* *
25793030 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGA-CTCCATATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAA
25793095 CCGGCTAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCTCTCTGTGTGCTACTGATC
65 CCGGCTAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCC-CTCTGTGTGCTACTGATC
25793160 TCGCTACCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGG
129 TCGC-A---------CTGCCACAACCCTCGGTCCGGCTGGG
* * * *
25793201 GCTTAGATAGGGAATGTAATCCATATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCGCTTA
1 GCTTAGACATGGAATG-ACTCCATATGCCTAAGCCAACCCACGAAACAG-GCGTGCGGGCGCTCA
* ** * * * * * *
25793265 ACCGACCGGAGAGGTAGAATGCGCAAGCCAGGGATCAGTTCGATCCCCCCTGTGTGCTACCGATC
64 ACCGGCTAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCTCTGTGTGCTACTGATC
25793330 CTACTACCGT
Statistics
Matches: 251, Mismatches: 33, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
158 4 0.02
159 111 0.44
161 1 0.00
170 17 0.07
171 117 0.47
172 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGACTCCATATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAAC
CGGCTAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGGTCCCCTCTGTGTGCTACTGATCTC
GCACTGCCACAACCCTCGGTCCGGCTGGG
Found at i:25793408 original size:26 final size:25
Alignment explanation
Indices: 25793362--25793411 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
25793352 GATCTGATCC
25793362 TAGATTGGAATGAACTCCGTATGCT
1 TAGATTGGAATGAACTCCGTATGCT
*
25793387 TAGATTGGAGATGAACTTCGTATGC
1 TAGATTGGA-ATGAACTCCGTATGC
25793412 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (25 bp):
TAGATTGGAATGAACTCCGTATGCT
Found at i:25793728 original size:354 final size:354
Alignment explanation
Indices: 25793053--25793744 Score: 829
Period size: 354 Copynumber: 2.0 Consensus size: 354
25793043 ATGAGCTCCC
* * *
25793053 TATGCCTAAGCCAACCCACGAAACAGGCGTACGGGCGCTCAACCGGCTAGAGAGGCAGAATGCGC
1 TATGCCTAAGCCAACCCACGAAACAGGCGTACGGGCACTCAACCAGCCAGAGAGGCAGAATGCGC
* * * * * * *
25793118 AAGCCGGGGATCAGCTCGGTCCCTCTCTGTGTGCTACTGATCTCGCTACCGGTCCTGCTGCCACA
66 AAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGATCCCGCTACCGATCCTGCTGCCACA
25793183 ACCCTCGGTCCGGCTGGGGCTTAGATAGGGAATGTAATCCATATGCCTAAGCCAACCCACGAAAC
131 ACCCTCGGTCCGGCTGGGGCTTAGATAGGGAATGTAATCCATATGCCTAAGCCAACCCACGAAAC
* * * * * **
25793248 GAGCGTGCGGGCGCTTAACCGACCGGAGAGGTAGAATGCGCAAGCCAGGGATCAGTTCGATCCCC
196 GAGCGTACGGGCACTCAACCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCC
** * * * * *
25793313 CCTGTGTGCTACCGATCCTACTACCGTAATCCTTGTCCGGATCTGATCCTAGATTGGAATGAACT
261 CCTACGTGCTACAGATCCTACTACCGCAACCCTCGTCCGGATCTGATCCTAGATGGGAATGAACT
25793378 CCGTATGCTTAGATTGGAGATGAACTTCG
326 CCGTATGCTTAGATTGGAGATGAACTTCG
* * * * *
25793407 TATGCCTAAGTCAACCCACGAAAC-GAGCGTACGGGCATTCAACTAGCCGGAGAGGCATAATGCG
1 TATGCCTAAGCCAACCCACGAAACAG-GCGTACGGGCACTCAACCAGCCAGAGAGGCAGAATGCG
* * * *
25793471 CAAGCCATGGATCAGCCCGGTCCCCCTCTGCGTG-TCGCCGATCCCGCTGCCGATCCTGTTGCCA
65 CAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCT-ACCGATCCCGCTACCGATCCTGCTGCCA
* * * * * *
25793535 CAACCCTCGGTCCGGTTGGGGCTTAGAT-GTGGAATGTACTCCGTAT-CCTAAGCTAACCTATGA
129 CAACCCTCGGTCCGGCTGGGGCTTAGATAG-GGAATGTAATCCATATGCCTAAGCCAACCCACGA
* * * * *
25793598 AACGAGTGTACGGGCACTCATCCGATCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCC-AGT
193 AACGAGCGTACGGGCACTCAACCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGA-T
* * * * * *
25793662 CCCCCCTACGTGTTATAGATCCTGCTGCCGCAACCCTCGAT-CTGATCTGATCTTAGACTGGGAA
257 CCCCCCTACGTGCTACAGATCCTACTACCGCAACCCTCG-TCCGGATCTGATCCTAGA-TGGGAA
*
25793726 TGAACTCCGTGTGCTTAGA
320 TGAACTCCGTATGCTTAGA
25793745 CTGGGGAAGA
Statistics
Matches: 281, Mismatches: 51, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
352 1 0.00
353 110 0.39
354 170 0.60
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (354 bp):
TATGCCTAAGCCAACCCACGAAACAGGCGTACGGGCACTCAACCAGCCAGAGAGGCAGAATGCGC
AAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGATCCCGCTACCGATCCTGCTGCCACA
ACCCTCGGTCCGGCTGGGGCTTAGATAGGGAATGTAATCCATATGCCTAAGCCAACCCACGAAAC
GAGCGTACGGGCACTCAACCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCC
CCTACGTGCTACAGATCCTACTACCGCAACCCTCGTCCGGATCTGATCCTAGATGGGAATGAACT
CCGTATGCTTAGATTGGAGATGAACTTCG
Found at i:25793749 original size:26 final size:26
Alignment explanation
Indices: 25793713--25793817 Score: 142
Period size: 26 Copynumber: 4.0 Consensus size: 26
25793703 CTGATCTGAT
* *
25793713 CTTAGACT-GGGAATGAACTCCGTGTG
1 CTTAGACTGGGGAA-GAACTCTGTATG
25793739 CTTAGACTGGGGAAGAACTCTGTATG
1 CTTAGACTGGGGAAGAACTCTGTATG
25793765 CTTAGACTGGGGAAGAACTCTGTATG
1 CTTAGACTGGGGAAGAACTCTGTATG
* *
25793791 CCTAGACTGGGGATGAACT-TCGTATG
1 CTTAGACTGGGGAAGAACTCT-GTATG
25793817 C
1 C
25793818 CTAAGTCAAC
Statistics
Matches: 73, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
25 1 0.01
26 67 0.92
27 5 0.07
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGAAGAACTCTGTATG
Found at i:25795004 original size:26 final size:26
Alignment explanation
Indices: 25794975--25795027 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25794965 CCCGTTCAAT
*
25794975 CTTAGACTAGGAATGAAATCCGTATG
1 CTTAGACTAGGAATGAAATCCATATG
* * *
25795001 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAAATCCATATG
25795027 C
1 C
25795028 CTAAGACAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCATATG
Found at i:25795382 original size:26 final size:26
Alignment explanation
Indices: 25795331--25795383 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25795321 CCGGTCTGAT
**
25795331 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25795357 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25795383 C
1 C
25795384 CTAAGTCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25795414 original size:356 final size:355
Alignment explanation
Indices: 25794735--25795428 Score: 883
Period size: 355 Copynumber: 2.0 Consensus size: 355
25794725 GGTCGAAGAT
* * * ** * *
25794735 GCATAATGCGCAAGCCAGGGATCGGCCTGATCCACCTCTGCGTGCTGTCGGTCCCGCTGCCACAA
1 GCATAATGCACAAGCCACGGATCAGCCTGATCCACCTCTGCGTGCTACCGATCCCACTGCCACAA
*
25794800 CCCTCGGTCCGACTGGGGCTTAGACATCGAATGAGCACCATATGAATAAGCCAACCCATGAAACG
66 CCCTCGGTCCGACTGGGGCTTAGACATCGAATGAGCACCATATGAATAAGCCAACCCACGAAACG
* * * * * *
25794865 GGCGTGCGGGCGCTCAACCGATCGGAGAGGCAAAATGCACAAGCTGGGGATCGGCCCGGTCCCCC
131 AGCGTACGGGCGCTCAACCGATCGAAGAGGCAAAATGCACAAGATGGGGATCGACCCGATCCCCC
25794930 TGCGTGCTGGCCATCCTGATGTCGCAACCCTCAGTCCCGTTCAATCTTAGACTAGGAATGAAATC
196 TGCGTGCTGGCCATCCTGATGTCGCAACCCTCAGTCCCGTTCAATCTTAGACTAGGAATGAAATC
*
25794995 CGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGACAACTCACGAAACGAGCTTGCGGGTG
261 CGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGACAACTCACGAAACGAGCGTGCGGGTG
* *
25795060 GTCAGCCGGCCAGGGAGGCTAGCCGGGGAG
326 CTCAGCCGACCAGGGAGGCTAGCCGGGGAG
* * * *
25795090 GCATAATGCATAAGCCACGGATCAGCCTGATCCCCCTCTGCGTGCTACCGATCCCATTGCGACAA
1 GCATAATGCACAAGCCACGGATCAGCCTGATCCACCTCTGCGTGCTACCGATCCCACTGCCACAA
* * ** * ** *
25795155 CCCTCGGTCTGACTGGGGCTTAGACATGGAATGTA-TTCCGTATGCCTAAGCCAACCCACGAAAT
66 CCCTCGGTCCGACTGGGGCTTAGACATCGAATG-AGCACCATATGAATAAGCCAACCCACGAAAC
* * * * ** *
25795219 GAGCGTACGGGCGCTCAATCGGTCGAAGAGGTAGAATGTGCAAGATGGGGATCGACTCGATCCCC
130 GAGCGTACGGGCGCTCAACCGATCGAAGAGGCAAAATGCACAAGATGGGGATCGACCCGATCCCC
*** * * * *
25795284 CATGCGTGCTGTTGATCCTGCTGTCGCAACCCTC-GAT-CCGGTCTGATCTTAGACTGGGAATGA
195 C-TGCGTGCTGGCCATCCTGATGTCGCAACCCTCAG-TCCCGTTC-AATCTTAGACTAGGAATGA
* * * * *
25795347 ACTCTGTATGCTTAGATTGGGGATGAACTCCATATGCCTAAGTCAAAC-CATGAAACGAGCGTGC
257 AATCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGAC-AACTCACGAAACGAGCGTGC
25795411 GGGTGCTCAGCCGACCAG
321 GGGTGCTCAGCCGACCAG
25795429 AGAGAGGCAG
Statistics
Matches: 286, Mismatches: 48, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
355 166 0.58
356 117 0.41
357 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (355 bp):
GCATAATGCACAAGCCACGGATCAGCCTGATCCACCTCTGCGTGCTACCGATCCCACTGCCACAA
CCCTCGGTCCGACTGGGGCTTAGACATCGAATGAGCACCATATGAATAAGCCAACCCACGAAACG
AGCGTACGGGCGCTCAACCGATCGAAGAGGCAAAATGCACAAGATGGGGATCGACCCGATCCCCC
TGCGTGCTGGCCATCCTGATGTCGCAACCCTCAGTCCCGTTCAATCTTAGACTAGGAATGAAATC
CGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGACAACTCACGAAACGAGCGTGCGGGTG
CTCAGCCGACCAGGGAGGCTAGCCGGGGAG
Found at i:25796600 original size:26 final size:26
Alignment explanation
Indices: 25796556--25796608 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25796546 CTGGTCTAAT
*
25796556 CTTAGACTGGGAATTAAC-TCTGTATG
1 CTTAGACTGGGAATAAACTTC-GTATG
*
25796582 CTTAGACTGGGGATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
25796608 C
1 C
25796609 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:25796954 original size:26 final size:26
Alignment explanation
Indices: 25796925--25796977 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25796915 CCGATCCGAT
*
25796925 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25796951 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25796977 C
1 C
25796978 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25797321 original size:26 final size:26
Alignment explanation
Indices: 25797280--25797332 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25797270 CCGGTGTGAT
25797280 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
25797306 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
25797332 C
1 C
25797333 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:25797363 original size:355 final size:348
Alignment explanation
Indices: 25796239--25797398 Score: 1074
Period size: 356 Copynumber: 3.3 Consensus size: 348
25796229 CTGGTTCGAT
* * * * * *
25796239 CTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGAGCACTGAGC
1 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* * * * * *
25796304 CGGCCGAAGAGGCATAATACGCAAGTCGAGGATCGACCCGGTCCCCCTCTGCGTGTTGTCGAT-C
66 CGACCGGAGAGGCATAATGCGCAAGCCGAGGATCG-CCCGGTCCCCCTCTGCGTGCTGCCGATCC
** ** * * *
25796368 C--CG-CTG---CCACAACCCTCAATCCGACTAGGGCTTAGGCA-TGGAATG-AGCTCCCTATGC
130 CTGCGTCTGCTACCACAACCCTCGGTCCGGTTGGGGCTTA-GAAGTGGAATGTA-CTCCATATGC
* * * * *
25796425 CTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAGTC-AGCCTG-AGAGGCAGAATACGCAAG
193 CTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGA-CC-GAAAAGGCAGAATACGAAAG
* * * * * ** *
25796488 CCAGGGATCGACCTGGTCCCCCCTGCGTACTGT-CGATCCTGCTGCCACAACCCTCGATCTGGTC
256 CGA-GGATCGACCCGGTCCCCCTTGCGTGCT-TCCGATCCTGCTGTCGTAACCCTCGATCCGGTC
* * *
25796552 TAATCTTAGACTGGGAATTAACTCTGTATG
319 TGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
25796582 CTTAGACTGGGGATAAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGC-CAAG
1 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAA-
** * * *
25796646 CCGATTGGAAAGGCCGGTTGGAGAGGCATAATTTGCAAGCAGGGGATCTGCCTGGTCCCCCTCTG
65 CC-----G--A--CC----GGAGAGGCATAATGCGCAAGCCGAGGATC-GCCCGGTCCCCCTCTG
* * * *
25796711 CGTGCTGCCGATCCCGCTGCCAGTCCTGCTACAATAACCCTCGGTCCAGTTGGGGCTTAGATGTG
116 CGTGCTGCCGAT-CC-CTG-C-GT-CTGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGAAGTG
* * * *
25796776 GAATGTACTCCATATGCCTAATCCAACCCATGAAACGAGCGTGCAGGCGCTCAG-CTG-GCTAAA
176 GAATGTACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTC-GACCGAAA
* * * ** * * *
25796839 GAGGCACAATGA-GCAAAGCCGGGGATTGGTCCGATCCCCCTTGTGTGCTACCGATCCTGCTGTC
240 -AGGCAGAAT-ACG-AAAG-CGAGGATCGACCCGGTCCCCCTTGCGTGCTTCCGATCCTGCTGTC
* * * *
25796903 GTAACCCTCAATCCGATCCGATCTTAGATTGGGAATGAACTCCGTATG
301 GTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
*
25796951 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* *
25797016 CGACCGGAGAGGCATAATGCGCAAGCCGAAGATCAGCCCGGTCCCCCTCTACGTGCTGCCGATCC
66 CGACCGGAGAGGCATAATGCGCAAGCCGAGGATC-GCCCGGTCCCCCTCTGCGTGCTGCCGATCC
*
25797081 TACTGTCGGTCTTGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGAAGTGGAATGTACTCCGTA
130 --CTG-C-GTC-TGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGAAGTGGAATGTACTCCATA
* * *
25797146 TGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAGTCGACCGAAAAGGCAGAATACGTAA
190 TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCGAAAAGGCAGAATACGAAA
* * * * * *
25797211 GTCGAGGATCGACCCGGTGCCCCTTGCGTGCTTCCGATCCTACTATCGTAACCCTTGGTCCGGTG
255 G-CGAGGATCGACCCGGTCCCCCTTGCGTGCTTCCGATCCTGCTGTCGTAACCCTCGATCCGGTC
* *
25797276 TGATCTTAGACTGGAAATGAACTCCATATG
319 TGATCTTAGACTGGGAATGAACTCCGTATG
* ** *
25797306 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* ** *
25797371 CGACCAGAGAGGCAGGATGCGCATGCCG
66 CGACCGGAGAGGCATAATGCGCAAGCCG
25797399 GTTATCGAAC
Statistics
Matches: 653, Mismatches: 121, Indels: 74
0.77 0.14 0.09
Matches are distributed among these distances:
342 1 0.00
343 54 0.08
348 1 0.00
352 2 0.00
355 165 0.25
356 197 0.30
357 6 0.01
358 1 0.00
359 1 0.00
360 2 0.00
362 2 0.00
363 1 0.00
364 1 0.00
365 3 0.00
367 4 0.01
368 77 0.12
369 131 0.20
370 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (348 bp):
CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
CGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGCCCGGTCCCCCTCTGCGTGCTGCCGATCCC
TGCGTCTGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGAAGTGGAATGTACTCCATATGCCTA
AGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCGAAAAGGCAGAATACGAAAGCGAGG
ATCGACCCGGTCCCCCTTGCGTGCTTCCGATCCTGCTGTCGTAACCCTCGATCCGGTCTGATCTT
AGACTGGGAATGAACTCCGTATG
Found at i:25799317 original size:184 final size:184
Alignment explanation
Indices: 25798894--25799318 Score: 462
Period size: 184 Copynumber: 2.3 Consensus size: 184
25798884 ATGAACTCTA
* * * * * * * *
25798894 TATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGTTCAGTTGGCCGAAGAGGCCGGTTAGAG
1 TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTAAG-TCGACGGAGAGGCCGGTCAGAG
* * * * * * * *
25798959 AGGCATAATGCGAAAGTCGGGGTTTAGCCCAGTTACCCTCTGAGGTGCTACCGATCCCGCTGTCG
65 AGGCATAATGCGAAAGCCGGGGATCAGCCCAGTCACCCTCTGACGTGCTACCGATCCCACTGCCA
* * * **
25799024 GTCCTGCTGCCACAACCCTCAATCCGACTGGGGCTTAGACGTGGAATGTACTTTG
130 GTCCTGCTACCACAACCCTCAATCCGACTGGGGCTTAGACATGAAATGTACTCCG
* ** * *
25799079 TATGCCTAAGCCAACCCATGAAACGAGCGTGGGGGCAC-ACAGTCGACTGGAGAGGCCGGTCGGA
1 TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTA-AGTCGAC-GGAGAGGCCGGTCAGA
* * * *
25799143 GAGGCATAATGTGTAAGCCGGGGATCAGCTC-GATCCCCCTCTG-CGTGCTACCGATCCCACTGC
64 GAGGCATAATGCGAAAGCCGGGGATCAGCCCAG-TCACCCTCTGACGTGCTACCGATCCCACTGC
* * *
25799206 CAGTTCTGCTACCACAACCCT-AGGTTCGACTGGGGCTTAGACATGAAATGTACTCCG
128 CAGTCCTGCTACCACAACCCTCA-ATCCGACTGGGGCTTAGACATGAAATGTACTCCG
*
25799263 TATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTAAGTCGATCGGAGAGGC
1 TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTAAGTCGA-CGGAGAGGC
25799319 AAAATACGCA
Statistics
Matches: 197, Mismatches: 37, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
183 1 0.01
184 114 0.58
185 82 0.42
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.20
Consensus pattern (184 bp):
TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTAAGTCGACGGAGAGGCCGGTCAGAGA
GGCATAATGCGAAAGCCGGGGATCAGCCCAGTCACCCTCTGACGTGCTACCGATCCCACTGCCAG
TCCTGCTACCACAACCCTCAATCCGACTGGGGCTTAGACATGAAATGTACTCCG
Found at i:25800615 original size:26 final size:26
Alignment explanation
Indices: 25800579--25800631 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25800569 CTAGTCTGAT
25800579 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
25800605 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25800631 C
1 C
25800632 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25800998 original size:26 final size:26
Alignment explanation
Indices: 25800947--25800999 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25800937 CCGATCCGAT
* *
25800947 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25800973 CTTAGACT-GGAGATGAACTCCATATG
1 CTTAGACTGGGA-ATGAACTCCATATG
25800999 C
1 C
25801000 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25801706 original size:26 final size:26
Alignment explanation
Indices: 25801668--25801720 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25801658 GGCTCAAAAT
*
25801668 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
25801694 CTTAGACAT-GGAATGAGCTCCCTATG
1 CTTAGAC-TGGGAATGAACTCCCTATG
25801720 C
1 C
25801721 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:25801903 original size:26 final size:26
Alignment explanation
Indices: 25801852--25801904 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
25801842 CCGGTCTGAT
* **
25801852 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCATATG
25801878 CTTAGACTAGGG-ATAAACTCCATATG
1 CTTAGACT-GGGAATAAACTCCATATG
25801904 C
1 C
25801905 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:25803488 original size:26 final size:26
Alignment explanation
Indices: 25803452--25803504 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25803442 CCGGTCTGAT
25803452 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25803478 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25803504 C
1 C
25803505 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25803773 original size:354 final size:353
Alignment explanation
Indices: 25803268--25803923 Score: 940
Period size: 354 Copynumber: 1.9 Consensus size: 353
25803258 GCCAGTCTCG
* *
25803268 CTGCCACAACCCTCCGTCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACC
* * * * * ** *
25803333 CACGGAACGGGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCTCAGTCGGGGATCGACCC
66 CACGGAACGAGCGTACGGGCGCTCAACCGACCGAAGAGGCAGAATGCGCAACCCGGGATCGACCC
* * * *
25803398 GATCCCCCCTACGTTCTGTCGATCCTGTTGCCACAACCCTCAATCCGGTCTGATCTTAGACTGGG
131 GATCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAATCCAGTCCGATCTTAGACTGGG
* * * *
25803463 AATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
196 AATGAACTCCATAGGCTTAGAATGCGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGC
* * *
25803528 GTGCGGGTGCTCAGCCGGCCGGAGAGGCATAATGCGTAAGTCGAGGGTCAGCCCGATCCCTCTCT
261 GTGCGGGCGCTCAG-CAGCCGGAGAGGCAGAATGCGTAAGTCGAGGGTCAGCCCGATCCCTCTCT
25803593 GCATGCTGTCGATCCCGCTGCTGGTCCTA
325 GCATGCTGTCGATCCCGCTGCTGGTCCTA
* * *
25803622 CTGCCACAACCCTCAGTCCGGCTAGGGTTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAA-
1 CTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAAC
** *
25803685 CCA-GTGAAACGAGCGTGTGGGCGCTCAACCGACCGAATAGGCAGAATGCGCAACCCGGGATCGA
65 CCACG-G-AACGAGCGTACGGGCGCTCAACCGACCGAAGAGGCAGAATGCGCAACCCGGGATCGA
* * * *
25803749 CCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCACAACCCTCGATCCAGTCCGATCTTAGACT
128 CCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAATCCAGTCCGATCTTAGACT
* *
25803814 GGGAATGAACTCCGTAGGCTTAGAATGCGGATGAACTCCATATGCCTAAGTCAACCCATGAAATG
193 GGGAATGAACTCCATAGGCTTAGAATGCGGATGAACTCCATATGCCTAAGTCAACCCATGAAACG
* *
25803879 AGCGTGCGGGCGCTCAGCAGTCGGAGAGGTAGAATGCGTAAGTCG
258 AGCGTGCGGGCGCTCAGCAGCCGGAGAGGCAGAATGCGTAAGTCG
25803924 GGGATCGACC
Statistics
Matches: 264, Mismatches: 35, Indels: 7
0.86 0.11 0.02
Matches are distributed among these distances:
352 1 0.00
353 28 0.11
354 234 0.89
355 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (353 bp):
CTGCCACAACCCTCAGTCCGACTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACC
CACGGAACGAGCGTACGGGCGCTCAACCGACCGAAGAGGCAGAATGCGCAACCCGGGATCGACCC
GATCCCCCCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAATCCAGTCCGATCTTAGACTGGG
AATGAACTCCATAGGCTTAGAATGCGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGC
GTGCGGGCGCTCAGCAGCCGGAGAGGCAGAATGCGTAAGTCGAGGGTCAGCCCGATCCCTCTCTG
CATGCTGTCGATCCCGCTGCTGGTCCTA
Found at i:25804046 original size:182 final size:184
Alignment explanation
Indices: 25803665--25804114 Score: 500
Period size: 183 Copynumber: 2.5 Consensus size: 184
25803655 CATGGAATGT
* * * * *
25803665 ACTCCGTATGCCTAAGCCAA-CCAGTGAAACGAGCGTGTGGGCGCTCAACCGACCGAATAGGCAG
1 ACTCCGTATGCCTAAGTCAACCCA-TGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAG
* ** ** *
25803729 AATGCGCAA-CCCGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCACAACCCTC
65 AATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCACGCTACCGATCCTGCTCTCACAACCCTC
* *
25803793 GATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAGGCTTAGAATGCGGATGA
130 GATCCAGTCCGATATTAGACTGGGAATGAACTCCGTAGGCTTAGAATGCAGATGA
* * * * *
25803848 ACTCCATATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCAG-TCGGAGAGGTAGA
1 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGA
* * ** *
25803912 ATGCGTAAGTCGGGGATCGACCCGGTCCCCCCTGCACGCTACCGATCCTGCTC-CTGTAACCCTT
66 ATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCACGCTACCGATCCTGCTCTC-ACAACCCTC
** * * * * * *
25803976 GATCTGGT-TGATATTCGATTGGGAATGAACTCTGTATGCTTAGACTAG-AGATGA
130 GATCCAGTCCGATATTAGACTGGGAATGAACTCCGTAGGCTTAGAAT-GCAGATGA
* * *
25804030 ACTCCGTATGCCTAAGTCAACCCA-CAGAACGAGCGCGCGGGCGCTCAGCCGACCAGAGAGGCAG
1 ACTCCGTATGCCTAAGTCAACCCATGA-AACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAG
*
25804094 GATGCGCAAGCCGGGGATCGA
65 AATGCGCAAGCCGGGGATCGA
25804115 ACGGGTGGTA
Statistics
Matches: 219, Mismatches: 42, Indels: 12
0.80 0.15 0.04
Matches are distributed among these distances:
181 1 0.00
182 97 0.44
183 118 0.54
184 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (184 bp):
ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGA
ATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCACGCTACCGATCCTGCTCTCACAACCCTCG
ATCCAGTCCGATATTAGACTGGGAATGAACTCCGTAGGCTTAGAATGCAGATGA
Found at i:25805394 original size:26 final size:26
Alignment explanation
Indices: 25805343--25805395 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25805333 CCGGTCTTCT
* * * *
25805343 CTTAGACTGGGGATGAATTTCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
25805369 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
25805395 C
1 C
25805396 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:25805730 original size:26 final size:26
Alignment explanation
Indices: 25805701--25805751 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25805691 GGCTCAAAAT
25805701 CTTAGAC-TGGAAAT-GAGCTCCGTATG
1 CTTAGACATGG-AATGGA-CTCCGTATG
25805727 CTTAGACATGGAATGGACTCCGTAT
1 CTTAGACATGGAATGGACTCCGTAT
25805752 ACCTAAGTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGGACTCCGTATG
Found at i:25806247 original size:158 final size:157
Alignment explanation
Indices: 25805727--25806254 Score: 488
Period size: 158 Copynumber: 3.3 Consensus size: 157
25805717 GCTCCGTATG
* * * * *
25805727 CTTAGACAT-GGAATGGACTCCGTATACCTAAGTCGACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCA-
* * ** * * * * *
25805791 T-CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATAAACTCGGTCACCTCTACGTGCTATCGATC
64 TCCGG-CAGAAAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCCCCCCTGCGTGCTGTCGATC
* * *
25805855 CTACTGCCACAACCCTCGGTTTGGTCCGAT
128 TTACTGCCACAACCCTCGGTCTGGTCTGAT
* ** * * *
25805885 CTTCGACTGGGAATGAACTCCGTATGTATAAGTCAACCCACGAAACGAGCGTGCTGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCATC
* * * * * * * *
25805950 CAGCCGAAGAGGCATAATGCGCAAGCCAGGTATCGGCCCGGTCCCCCTCTGCATGCTGTCGGTCT
66 CGGCAGAA-AGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCCCCC-CTGCGTGCTGTCGATCT
* * * **
25806015 CATTGCCACAACCCTCGGTCCGG-CTGGGG
129 TACTGCCACAACCCTCGGTCTGGTCT-GAT
* * * * *
25806044 CTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCACTCAT
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAT
* * *
25806108 CCGGTCAGAAAGGCAGAATGCGCAAGTCGGGGATTGGCCCGATCCCCCCTGCGTGCTGTCGATCT
65 CCGG-CAGAAAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCCCCCCTGCGTGCTGTCGATCT
* * * *
25806173 TGCTACCGCAACCCTCGGTCTGGTCTGTT
129 TACTGCCACAACCCTCGGTCTGGTCTGAT
* * * *
25806202 CTTAGACTGGGGATAAACTGCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
25806255 TGGGTGCTCA
Statistics
Matches: 290, Mismatches: 71, Indels: 18
0.77 0.19 0.05
Matches are distributed among these distances:
157 5 0.02
158 160 0.55
159 120 0.41
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCATC
CGGCAGAAAGGCAGAATGCGCAAGCCGGGGATAGGCCCGGTCCCCCCTGCGTGCTGTCGATCTTA
CTGCCACAACCCTCGGTCTGGTCTGAT
Found at i:25806573 original size:26 final size:26
Alignment explanation
Indices: 25806544--25806596 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25806534 CCGGTCTGAT
*
25806544 CTTAGTCTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
25806570 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25806596 C
1 C
25806597 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25807305 original size:26 final size:26
Alignment explanation
Indices: 25807267--25807319 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25807257 GGATAAAAAT
*
25807267 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25807293 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25807319 C
1 C
25807320 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25807804 original size:26 final size:26
Alignment explanation
Indices: 25807768--25807820 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25807758 CCGGTCCGAT
25807768 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25807794 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25807820 C
1 C
25807821 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25808872 original size:26 final size:26
Alignment explanation
Indices: 25808834--25808886 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25808824 GGCTCAAAAT
25808834 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25808860 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
25808886 C
1 C
25808887 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25809372 original size:26 final size:26
Alignment explanation
Indices: 25809321--25809373 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25809311 CCAGTTCGAT
*
25809321 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
25809347 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25809373 C
1 C
25809374 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25811081 original size:159 final size:159
Alignment explanation
Indices: 25810791--25811084 Score: 349
Period size: 159 Copynumber: 1.8 Consensus size: 159
25810781 TTAGAAATGG
* * ** * *
25810791 AATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGACCAAAGAT
1 AATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCAACCAAAGAG
* * ** * ** * **
25810856 TCAGAATGCGCAAGTCGGGGATCGACCCGGTCCACCCCTGAATGCTGTAGATCCTGCTACTGCAA
66 GCAGAATGCGCAAGCCAAGGATCGACCCGATCCACCCCTGAATGCTACAGATCCCGCTACCACAA
25810921 CCCTCGGTCTGGTCCGATCTTAAACTAGA
131 CCCTCGGTCTGGTCCGATCTTAAACTAGA
* *
25810950 AATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGTCAACCAAAGAG
1 AATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCAACCAAAGAG
* ** * *
25811015 GCATAATGCGCAAGCCAAGGATC-AGCCCGATCC-CCCTCTGCGTGCTACCGATCCCGCTGCCAC
66 GCAGAATGCGCAAGCCAAGGATCGA-CCCGATCCACCC-CTGAATGCTACAGATCCCGCTACCAC
25811078 AACCCTC
129 AACCCTC
25811085 TATCCAGCTA
Statistics
Matches: 110, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
158 4 0.04
159 106 0.96
ACGTcount: A:0.27, C:0.32, G:0.24, T:0.17
Consensus pattern (159 bp):
AATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCAACCAAAGAG
GCAGAATGCGCAAGCCAAGGATCGACCCGATCCACCCCTGAATGCTACAGATCCCGCTACCACAA
CCCTCGGTCTGGTCCGATCTTAAACTAGA
Found at i:25811285 original size:26 final size:26
Alignment explanation
Indices: 25811256--25811306 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
25811246 CGATCTGATC
25811256 TTAGACT-GGGAATGAACTCTGTATGG
1 TTAGACTAGGG-ATGAACTCTGTATGG
25811282 TTAGACTAGGGATGAACTCTGTATG
1 TTAGACTAGGGATGAACTCTGTATG
25811307 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTAGGGATGAACTCTGTATGG
Found at i:25811653 original size:26 final size:26
Alignment explanation
Indices: 25811624--25811676 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25811614 CCGATTTGAT
25811624 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25811650 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25811676 C
1 C
25811677 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25812968 original size:170 final size:171
Alignment explanation
Indices: 25812650--25812969 Score: 401
Period size: 170 Copynumber: 1.9 Consensus size: 171
25812640 CCTCTGCGTG
* * *
25812650 CTGTCAGTCCCACTACCGCAACCCTCGGTCCGACTGGGGCTTAGACATAGAATGAGCTCCCTATG
1 CTGTCAGTCCCACTACCACAACCCTCGATCCGAATGGGGCTTAGACATAGAATGAGCTCCCTATG
* * * ** ** * *
25812715 CCTAAGCCAACCCATGAAATGGGCGTGCGGGTTCTCAGTCGGCCAGAGAGGCAGAATGTGCAAGC
66 CCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGC
* * *
25812780 CGGGGATCGGCACGGTCCCCTTCTGCGTGCTGCCGAACCCA
131 AGAGGATCGACACGGTCCCCTTCTGCGTGCTGCCGAACCCA
* * * * *
25812821 CTGTCGGTCCTACTACCACAACCCTTGAT-CGAATGGGGCTTAGACATGGAATGTA-CTCCGTAT
1 CTGTCAGTCCCACTACCACAACCCTCGATCCGAATGGGGCTTAGACATAGAATG-AGCTCCCTAT
* * *
25812884 GCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTTAGCCGGTCGGAGAGGCAGAATGCGCAAG
65 GCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAG
*
25812949 CAGAGGATCGACCCGGTCCCC
130 CAGAGGATCGACACGGTCCCC
25812970 CCTGTGTTTT
Statistics
Matches: 124, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
170 99 0.80
171 25 0.20
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.17
Consensus pattern (171 bp):
CTGTCAGTCCCACTACCACAACCCTCGATCCGAATGGGGCTTAGACATAGAATGAGCTCCCTATG
CCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGC
AGAGGATCGACACGGTCCCCTTCTGCGTGCTGCCGAACCCA
Found at i:25813053 original size:26 final size:26
Alignment explanation
Indices: 25813017--25813067 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25813007 CCAGTTTGAT
25813017 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
25813043 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAAACTGGGAATGAACTCCGTAT
25813068 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:25814841 original size:13 final size:13
Alignment explanation
Indices: 25814823--25814847 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25814813 GAGCTCAGCT
25814823 GGTCGGAGAGGCC
1 GGTCGGAGAGGCC
25814836 GGTCGGAGAGGC
1 GGTCGGAGAGGC
25814848 ATAATGCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.20, G:0.56, T:0.08
Consensus pattern (13 bp):
GGTCGGAGAGGCC
Found at i:25815128 original size:26 final size:26
Alignment explanation
Indices: 25815099--25815151 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25815089 CCGATCTGAT
25815099 CTTAGACTGG-GAGTGAACTCCGTATG
1 CTTAGACTGGAGA-TGAACTCCGTATG
25815125 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
25815151 C
1 C
25815152 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:25816004 original size:26 final size:26
Alignment explanation
Indices: 25815975--25816027 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25815965 CCGGTTCAAT
*
25815975 CTTAGACTGGGCATGAACTCCGTATG
1 CTTAGACAGGGCATGAACTCCGTATG
*
25816001 CTTAGACAGGGGATGAACTCCGTATG
1 CTTAGACAGGGCATGAACTCCGTATG
25816027 C
1 C
25816028 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGCATGAACTCCGTATG
Found at i:25816163 original size:184 final size:183
Alignment explanation
Indices: 25815817--25816285 Score: 564
Period size: 184 Copynumber: 2.5 Consensus size: 183
25815807 CTGACTGGGT
* * * * * * *
25815817 CTTAGACATGGAATGTACGCCGTATGCCTAAGCCAACCCACGAAACGAGCGAGCGGGCGCTCAGC
1 CTTAGACAGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* ** **
25815882 TGACTGGAGAGGCAGAATGCGCAAG-TCGATGATCGGTCTGATCCCCCCTGCGTGCTGCCAATCC
66 TGAC-CGAGAGGCAGAATGCGCAAGCT-GGGGATCGACCTGATCCCCCCTGCGTGCTGCCAATCC
* * *
25815946 TGCTACCGCAACACTCAATCCGGTTCAATCTTAGACTGGGCATGAACTCCGTATG
129 TACTACCGCAACACTCAATCCGGTTCAATCTTAGACTAGGAATGAACTCCGTATG
25816001 CTTAGACAGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACAGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
25816066 AT-ACCGACGAGGCAGAATGCACAAGCTGGGGATCGACCTGATCCCCCCTGTGTGCTGCCGATCC
66 -TGACCGA-GAGGCAGAATGCGCAAGCTGGGGATCGACCTGATCCCCCCTGCGTGCTGCCAATCC
* * * * * ** *
25816130 TATTACTGCAACCCTCGATCTGGTTTGATCTTAGACTAGGAATGAACTTCGTATG
129 TACTACCGCAACACTCAATCCGGTTCAATCTTAGACTAGGAATGAACTCCGTATG
* * * * * **
25816185 CTTAGACTGGGGATGAACTCCGCATGCCTAAGTCAACCCGTGAAATGAGCATGCGGGCATTCAGC
1 CTTAGACAGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* *
25816250 TGACCAGAGAGGCAGGATGCGCAAGCCGGGGATCGA
66 TGACC-GAGAGGCAGAATGCGCAAGCTGGGGATCGA
25816286 ACGGGTGGTA
Statistics
Matches: 244, Mismatches: 36, Indels: 10
0.84 0.12 0.03
Matches are distributed among these distances:
183 3 0.01
184 237 0.97
185 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.20
Consensus pattern (183 bp):
CTTAGACAGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
TGACCGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGATCCCCCCTGCGTGCTGCCAATCCTA
CTACCGCAACACTCAATCCGGTTCAATCTTAGACTAGGAATGAACTCCGTATG
Found at i:25816211 original size:26 final size:26
Alignment explanation
Indices: 25816159--25816211 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25816149 CTGGTTTGAT
* *
25816159 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
* *
25816185 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
25816211 C
1 C
25816212 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:25816572 original size:115 final size:116
Alignment explanation
Indices: 25816368--25816591 Score: 288
Period size: 115 Copynumber: 1.9 Consensus size: 116
25816358 TCATACAATG
* * **
25816368 GTCCCCTAAGTCTTCATGTGAAGTTTCATGGCAAGATGACCCGTTTTCTATTTTTCACAATTTTC
1 GTCCCCTAAGCCTTCATCTGAAGTTTCATGGCAAGACAACCCGTTTTCTATTTTTCACAATTTTC
* *
25816433 AAAACTTTTTGCAGTTTCAAATTTTTTTAAA-TTTTTTCAGAAAAAGTTTT
66 AAAACTTTTTACAGTTTCAAATTTTTTAAAAGTTTTTTCAGAAAAAGTTTT
* * ** *
25816483 GTCCCCTAAGCCTTCGTCTGAAGTTTCGTGGCAAGACAACTTGTTTTCTATTTTTCACGATTTTC
1 GTCCCCTAAGCCTTCATCTGAAGTTTCATGGCAAGACAACCCGTTTTCTATTTTTCACAATTTTC
* * *** *
25816548 GAAACTTTTTACGGTTTTGGATTTTTTAAAAGTTTTTTTAGAAA
66 AAAACTTTTTACAGTTTCAAATTTTTTAAAAGTTTTTTCAGAAA
25816592 GATTTTTTTC
Statistics
Matches: 91, Mismatches: 17, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
115 80 0.88
116 11 0.12
ACGTcount: A:0.25, C:0.17, G:0.14, T:0.44
Consensus pattern (116 bp):
GTCCCCTAAGCCTTCATCTGAAGTTTCATGGCAAGACAACCCGTTTTCTATTTTTCACAATTTTC
AAAACTTTTTACAGTTTCAAATTTTTTAAAAGTTTTTTCAGAAAAAGTTTT
Found at i:25817535 original size:26 final size:26
Alignment explanation
Indices: 25817497--25817546 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
25817487 GTCTGATCTC
25817497 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
25817523 AGACTGGGGATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
25817547 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:25818226 original size:26 final size:26
Alignment explanation
Indices: 25818190--25818242 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25818180 CCGATCTAAT
* *
25818190 CTTAGTCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25818216 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25818242 C
1 C
25818243 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25819252 original size:159 final size:157
Alignment explanation
Indices: 25818950--25819452 Score: 503
Period size: 159 Copynumber: 3.2 Consensus size: 157
25818940 GCTCCATATG
25818950 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
25819014 TCGACCGGAGAGGCAGAATGCCCAAGCCGGGGATCGACCCGAT-CCCGTCCTGCATGCTATCGAT
64 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCT-CTGCGTGCTGTCGAT
*** * *
25819078 CCTGCTGCTGTAACCCCCGATCCGGTCCAAT
128 CCTGCTGCAACAACCCTCGGT-CGGTCCAAT
* * * *
25819109 CTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCGCTAAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
25819174 CGGCCGAAGAGGCATAATACACAAGCTGGGGATCGGCTCAATCCCCCTCTGCGTGCTG-CTGATC
65 CGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTC-GATC
*** * * * * * **
25819238 CCAATACCACAACCCTCGGTCTGACGAGGG
129 CTGCTGCAACAACCCTCGGTCGGTCCA-AT
* * *
25819268 CTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
25819332 CCTACCGGAGAGGCAGAATGCGCAAGCCGGAGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATC
64 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATC
*
25819396 TTGCTGCAACAACCCTCGGTTCGGTCCAAT
129 CTGCTGCAACAACCCTCGG-TCGGTCCAAT
* *
25819426 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGAATGGGAATGAACTCCGTATGC
25819453 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 65, Indels: 19
0.76 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 55 0.20
159 209 0.77
160 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCT
GCTGCAACAACCCTCGGTCGGTCCAAT
Found at i:25819455 original size:26 final size:26
Alignment explanation
Indices: 25819426--25819478 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25819416 TCGGTCCAAT
25819426 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
25819452 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
25819478 C
1 C
25819479 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:25820557 original size:26 final size:26
Alignment explanation
Indices: 25820528--25820579 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25820518 GGCTCAAAAT
*
25820528 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25820554 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25820580 AATAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25820897 original size:159 final size:158
Alignment explanation
Indices: 25820555--25821020 Score: 392
Period size: 158 Copynumber: 2.9 Consensus size: 158
25820545 CTCCGTATGC
* *
25820555 TTAGACATGGAATGAACTCCGTATGAATAAGCCAACCCACGAAATGAGCGTGCAGGTGCTCAACC
1 TTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCAGGTGCACAACC
* * * *
25820620 GACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGACCTGGTTCCCCCTGCGTGCTGTCGGTCCTG
66 GACCGAAGAGGCAGAATGCACAAGCCAAGGATCGACCGGGTCCCCCCTGCGTGCTGTCGGTCCCG
** * * **
25820685 CTACCGTAACCCTCAGTCTAGTCTGATC
131 CTACCACAACCCTCAGTCCAGACTGAGA
* *
25820713 TTAGAC-TGGGAATGAACTCCGTATGCATACGTCAACCCACGAAATGAGCGTGC-GG-GCACTAA
1 TTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCAGGTGCAC-AA
** * ** *
25820775 GCCGGTCGAAGAGGCATAATGCACAAGCCGGGGAGT-GGCCGGGTCCCCCTCTGCGTGCTG-CTG
64 -CCGACCGAAGAGGCAGAATGCACAAGCCAAGGA-TCGACCGGGTCCCCC-CTGCGTGCTGTC-G
*
25820838 GTCCCGCTACCACAACCCTCAGTCCA-ACTGGGGA
125 GTCCCGCTACCACAACCCTCAGTCCAGACT-GAGA
* * * * ** *
25820872 TTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACTG-GCACGTG--GGCCCCCA
1 TTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAA-TGAG--CGTGCAGGTGCACA
* * * * * * ** * * * *
25820934 ACCGACCGGAGAGGAAAAATACGCAAGTCGGGGATCGGCCCGGTTCCCCCTGCGTGCTGTCGATC
63 ACCGACCGAAGAGGCAGAATGCACAAGCCAAGGATCGACCGGGTCCCCCCTGCGTGCTGTCGGTC
* * *
25820999 CTGCTACCGCAACCCTCGGTCC
128 CCGCTACCACAACCCTCAGTCC
25821021 GGTCCGATCT
Statistics
Matches: 251, Mismatches: 43, Indels: 28
0.78 0.13 0.09
Matches are distributed among these distances:
156 3 0.01
157 5 0.02
158 121 0.48
159 109 0.43
160 7 0.03
161 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCAGGTGCACAACC
GACCGAAGAGGCAGAATGCACAAGCCAAGGATCGACCGGGTCCCCCCTGCGTGCTGTCGGTCCCG
CTACCACAACCCTCAGTCCAGACTGAGA
Found at i:25821065 original size:26 final size:26
Alignment explanation
Indices: 25821029--25821081 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25821019 CCGGTCCGAT
* * *
25821029 CTTAGATTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25821055 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25821081 C
1 C
25821082 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25821215 original size:184 final size:184
Alignment explanation
Indices: 25820955--25821286 Score: 495
Period size: 184 Copynumber: 1.8 Consensus size: 184
25820945 AGGAAAAATA
* * * * *
25820955 CGCAAGTCGGGGATCGGCCCGGTTCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTC
1 CGCAAGTCGAGGATCGACCCGGATCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATC
* * * * * * *
25821020 CGGTCCGATCTTAGATTGGGAATTAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTA
66 CGATACGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTA
25821085 AGTCAACCCACGAAACGAACGTCCGGACGCTCAGTCGGCCTAGGAGGCAGAATG
131 AGTCAACCCACGAAACGAACGTCCGGACGCTCAGTCGGCCTAGGAGGCAGAATG
* * **
25821139 CGCAAGTCGAGGATCGACCC-GATCCTGCCTGTGTGCTGTCGATCCTACTGTCGCAACCCTCGAT
1 CGCAAGTCGAGGATCGACCCGGATCC-CCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGAT
*
25821203 CCGATACGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGGATGGACTCCGTATGCCT
65 CCGATACGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCT
25821268 AAGTCAACCCACGAAACGA
130 AAGTCAACCCACGAAACGA
25821287 GCGTGTAGGC
Statistics
Matches: 130, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
183 4 0.03
184 126 0.97
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.22
Consensus pattern (184 bp):
CGCAAGTCGAGGATCGACCCGGATCCCCCTGCGTGCTGTCGATCCTACTACCGCAACCCTCGATC
CGATACGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTA
AGTCAACCCACGAAACGAACGTCCGGACGCTCAGTCGGCCTAGGAGGCAGAATG
Found at i:25821242 original size:26 final size:26
Alignment explanation
Indices: 25821213--25821265 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25821203 CCGATACGAT
25821213 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
25821239 CTTAGACTAGGGATGGACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25821265 C
1 C
25821266 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25821318 original size:184 final size:184
Alignment explanation
Indices: 25820935--25821324 Score: 480
Period size: 184 Copynumber: 2.1 Consensus size: 184
25820925 GGGCCCCCAA
* * * * * * *
25820935 CCGACCGGAGAGGAAAAATACGCAAGTCGGGGATCGGCCCGGTTCCCCCTGCGTGCTGTCGATCC
1 CCGACCAGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGATCCCCCTGCGTGCTGTCGATCC
* * * * * * * * *
25821000 TGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATTAACTCTGTATGCTTAGACTGG
66 TACTACCGCAACCCTCGATCCGATACGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAG
*
25821065 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTCCGGACGCTCAG
131 GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTCAGGACGCTCAG
* * * *
25821119 TCGGCCTAG-GAGGCAGAATGCGCAAGTCGAGGATCGACCC-GATCCTGCCTGTGTGCTGTCGAT
1 CCGACC-AGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGATCC-CCCTGCGTGCTGTCGAT
**
25821182 CCTACTGTCGCAACCCTCGATCCGATACGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
64 CCTACTACCGCAACCCTCGATCCGATACGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
* * * *
25821247 AGGGATGGACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTAGG-CGCTTAG
129 AGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGT-CAGGACGCTCAG
*
25821303 CCGACCAGAGAGGCAGGATGCG
1 CCGACCAGAGAGGCAGAATGCG
25821325 GAAACCGGGG
Statistics
Matches: 172, Mismatches: 30, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
183 6 0.03
184 163 0.95
185 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (184 bp):
CCGACCAGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGATCCCCCTGCGTGCTGTCGATCC
TACTACCGCAACCCTCGATCCGATACGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAG
GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTCAGGACGCTCAG
Done.