Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 266 of 402
Found at i:25821959 original size:26 final size:26
Alignment explanation
Indices: 25821930--25821982 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25821920 GGCTCAAAAT
*
25821930 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
25821956 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25821982 C
1 C
25821983 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25822325 original size:159 final size:157
Alignment explanation
Indices: 25821955--25822393 Score: 452
Period size: 159 Copynumber: 2.8 Consensus size: 157
25821945 AGCTCCGTAT
* * *
25821955 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGTACTCAG
* * * * **
25822020 CCGCCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCTACGTGCTGTCAATCC
66 CCGACCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCGA-TCCCCCCTGCGTGCTACCAATCC
* * * * *
25822085 TGCTGCCACAACCCTCAGTCTGGTCTGA
130 CGCTACCACAACCCTCAGTCAGATCGGA
* * * * * * *
25822113 TCTTAGAC-TGGGAATAAACTCCGTATGCATAAG-TCAACCCATGAGATGAGCGTGCGGGTACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCGTGCGGGTACTC
** * * **
25822176 AGCCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGATCCGATCCCCCACTGCGTGCTACCGG
64 AGCCGACCGGAGAGGCAAAATGCGCAAGCCAGGGATCGA-CCGATCCCCC-CTGCGTGCTACCAA
* *
25822241 TCCCGCTACCACAACCCTCGGTCCAGAT-GGG
127 TCCCGCTACCACAACCCTCAGT-CAGATCGGA
* * * * * *
25822272 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTGCAGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGTACTCAG
* * *
25822337 CCGACCGGAGAGGCAAAATGCTCAGGCCAGGGATCGGCCCGATCCCCCCTGCGTGCT
66 CCGACCGGAGAGGCAAAATGCGCAAGCCAGGGATC-GACCGATCCCCCCTGCGTGCT
25822394 GTCGATCCTA
Statistics
Matches: 226, Mismatches: 47, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 100 0.44
159 119 0.53
160 6 0.03
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGTACTCAG
CCGACCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCGATCCCCCCTGCGTGCTACCAATCCC
GCTACCACAACCCTCAGTCAGATCGGA
Found at i:25825928 original size:136 final size:136
Alignment explanation
Indices: 25825684--25825932 Score: 327
Period size: 136 Copynumber: 1.8 Consensus size: 136
25825674 AGCTCTGAAT
* * ** *
25825684 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCACTCAA
* ** * * *
25825749 TCGGTCGGAGAGGCAGAATGTGCAAGTCGGAGATTGACTCGGTCCCCCTACATGTTGTAGATCCT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGAGATCGACTCGGTCCCCCTACATGTTGTAGATCCT
25825814 GCTAGG
131 GCTAGG
** * *
25825820 GCTTAGATGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCACTCAA
* * * *
25825885 CCGACCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGAGATCGACTCGGTCCCCC
25825933 CTACGTGCTA
Statistics
Matches: 94, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
136 94 1.00
ACGTcount: A:0.25, C:0.26, G:0.30, T:0.20
Consensus pattern (136 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCACTCAA
CCGACCGGAGAGGCAGAATGCGCAAGCCGGAGATCGACTCGGTCCCCCTACATGTTGTAGATCCT
GCTAGG
Found at i:25827355 original size:159 final size:156
Alignment explanation
Indices: 25827054--25828205 Score: 738
Period size: 159 Copynumber: 7.1 Consensus size: 156
25827044 GCTCCGTATG
* * *
25827054 CTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
25827119 CTACC-AGAGAGGTAGAATGCGCAAGCCGGGGATTAACCCGGTCCTCCTCTACGTGCTGTCAATC
65 CGACCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCC-CCTCTGCGTGCTGTCGATC
* *** * *
25827183 CTTCTATTGCAACCCTTGGTCCGGTATGAT
128 CTACTACCACAACCCTCGGTCCGGT-GGAT
* * ** *
25827213 CTTAGACTGGGAATGAACTCTGTATGCATAAGTTAACCCACGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
25827278 CGACCGAAGAGGCATAATGTGCAAGCCGGGGATCGACCCGGTCCCCTTCTGCGTGCTGTCGGTCC
65 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCC-TCTGCGTGCTGTCGATCC
* * * * **
25827343 CACTGCCACAACCTTCGATCCGGTTGGGG
129 TACTACCACAACCCTCGGTCCGG-TGGAT
* * * * * *
25827372 CTTAGACAAGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** *
25827437 CGA-CTAGAGAGGCAGAATACGCAAGACGGGGAACGACCTGGT-CCCTCATGCGTGCTACCAATC
65 CGACCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTC-TGCGTGCTGTCGATC
** ** * * *
25827500 CTACTGTCGTAACCCTCAGTCTGGTCTGAT
128 CTACTACCACAACCCTCGGTCCGGT-GGAT
*
25827530 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGAGCTTAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC--G-G----G-
* * * ** *
25827595 CGACTGGAGAGGCCGATCGAAGAGGCATAATGCATAAGCCGAGGATC-AGCCCGGTCCCCCTCTG
57 CG-CT---CA-GCCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGT-CCCCTCTG
* * *
25827659 CGTGCTGCTGATCCCGCTACCGGTCCTACTACCACAACCCTCGGTTCGACTAGGGT
115 C--G-TGCTG-T--CG--A----TCCTACTACCACAACCCTCGGTCCG-GT-GGAT
* * * *
25827715 -TTAGACTTGGAGTGTACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
25827778 TGGCCGAAGAGGCAGAATGTGCAGGCCGGGGATCAACCCGATCCCCCCTACGTGCTGTCGATCCT
65 CGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCTGCGTGCTGTCGATCCT
* * * * **
25827843 GCTATCTCAACCCTCAGTCTAGTCGGAT
130 ACTACCACAACCCTCGGTCCGGT-GGAT
* * * *
25827871 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
25827936 C-AGTCAAAGAGGCATAATACGCAAGCCAGGGATCGATCTGGTGCCTCTCTGCGTGCTGTCGGTC
65 CGA-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT-CCCCTCTGCGTGCTGTCGATC
** * * **
25828000 CCGCTGCCACAACCTTCGGTCCGGCTGGGG
128 CTACTACCACAACCCTCGGTCCGG-TGGAT
* * * * * * *
25828030 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGTCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * **
25828095 CGATC-AGAGAGGCAGAATGCGCAAGCCGGGGATC-AGCCCGGTCCCCCCTATGTGCTGTCGATC
65 CGACCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCTCTGCGTGCTGTCGATC
* * * *** *
25828158 CTGCTATCGCAACCCTCGGTCTTATTCGAT
128 CTACTACCACAACCCTCGGTC-CGGTGGAT
25828188 CTTAGACTGGGAATGAAC
1 CTTAGACT-GGAATGAAC
25828206 ATCATATGCT
Statistics
Matches: 755, Mismatches: 185, Indels: 107
0.72 0.18 0.10
Matches are distributed among these distances:
156 5 0.01
157 48 0.06
158 192 0.25
159 324 0.43
160 5 0.01
161 2 0.00
163 2 0.00
165 2 0.00
166 7 0.01
167 3 0.00
169 7 0.01
170 34 0.05
171 32 0.04
172 5 0.01
173 5 0.01
174 3 0.00
175 5 0.01
176 1 0.00
178 1 0.00
180 2 0.00
181 1 0.00
183 20 0.03
184 45 0.06
185 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCTGCGTGCTGTCGATCCTA
CTACCACAACCCTCGGTCCGGTGGAT
Found at i:25828592 original size:26 final size:26
Alignment explanation
Indices: 25828556--25828608 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25828546 CTGGTCTGAT
*
25828556 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25828582 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25828608 C
1 C
25828609 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25828935 original size:26 final size:26
Alignment explanation
Indices: 25828899--25828951 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25828889 CCAGTCTGAT
* *
25828899 CTTAGCCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25828925 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25828951 C
1 C
25828952 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25829278 original size:26 final size:26
Alignment explanation
Indices: 25829249--25829301 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25829239 CTAGTCCGAT
25829249 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25829275 CTTAGACTGGGGATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25829301 C
1 C
25829302 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25829536 original size:337 final size:343
Alignment explanation
Indices: 25828854--25829695 Score: 858
Period size: 337 Copynumber: 2.4 Consensus size: 343
25828844 TAGTCCCCCC
* * * * * *
25828854 TGCGTGCTGCCGATCATGTTGTCGCAACCCTCGATCCAGTCTGATCTTAGCCTGGGAATGAACTC
1 TGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACTC
* * * * *
25828919 CGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGTCG
66 CGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCG
* ** *
25828984 CTTAACCGACCGAAGAGGCTGGCCAGAGAGGCATAATGCGTAAGCCAGGGATCAACCCGATCCCT
131 C-T--CAG-CC--A-AGGCT-G-CAGAGAGGCATAATGCACAAGCCAGGGATCAACCCGATCCCC
* * *
25829049 CTCTGCATGTTACCGATCCCACTGCCTATCCTGCTACCACAACCCTCAGTTTGGCTGGGGCTTAG
187 CTCTGCATGTTACCGATCCCACTGCCTATCCTGCTACCACAACCCCCAGTTCGACTGGGGCTTAG
* * ** * *
25829114 ACGTGGAATGTACTCCGTATGCCTAAACCAACCCACGAACCGAGCGTGCGGGCACTCAGTCGGCT
252 ACATGGAATGTACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACC
* * *
25829179 GGAGAGGCAGAATGCACAAGC-CA-GG
317 GGAGAGCCAGAATACACAAGCGAACGG
25829204 TGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACTC
1 TGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACTC
* * *
25829269 CGTATGCTTAGACTGGGGATGAACTCGGTATGCCTAAGTGAACCCACAAAACAAGCGTGCGGGCG
66 CGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCG
* * * * *
25829334 CTCAGCC-A-G-T-CGGAGAGGCATAATTCACAAGTC-GTGGATCAGCCC-AGTCCCCCTCTGCG
131 CTCAGCCAAGGCTGCAGAGAGGCATAATGCACAAGCCAG-GGATCAACCCGA-TCCCCCTCTGCA
* * * * *
25829393 TG-TAGTCGATCCCATTG-CTAATCTTGCTACCACAACCCCCGGTTCGACTGTGGCTTAGACATG
194 TGTTA-CCGATCCCACTGCCT-ATCCTGCTACCACAACCCCCAGTTCGACTGGGGCTTAGACATG
* * *
25829456 GAATGTACTCCGTATGCCTAAGCCAACCCACGAAACTAGCGTGCGGGCATTCAACCGACCGGAGA
257 GAATGTACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGGAGA
25829521 GCCAGAATACACAAGCTGGGAATCGG
322 GCCAGAATACACAAGC---GAA-CGG
* * * * * * * * *
25829547 TCCGGTCCCTCCTGCGTGCTACCGATCCTACTATCGTAACCCCCAATTTGGTCCAATCTTAGACT
1 T---G-----CGTGC-TG-T--CGATCCTGCTGTCGCAACCCTCGATCTAGTCCGATCTTAGACT
* *
25829612 AGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
54 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
*
25829677 AGCGTGTGGGCGCTCAGCC
119 AGCGTGCGGGCGCTCAGCC
25829696 GACCAGGGAG
Statistics
Matches: 412, Mismatches: 58, Indels: 39
0.81 0.11 0.08
Matches are distributed among these distances:
336 6 0.01
337 156 0.38
340 1 0.00
341 2 0.00
342 1 0.00
343 3 0.01
346 3 0.01
347 2 0.00
349 1 0.00
350 117 0.28
351 4 0.01
352 2 0.00
353 1 0.00
355 113 0.27
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.21
Consensus pattern (343 bp):
TGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACTC
CGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCG
CTCAGCCAAGGCTGCAGAGAGGCATAATGCACAAGCCAGGGATCAACCCGATCCCCCTCTGCATG
TTACCGATCCCACTGCCTATCCTGCTACCACAACCCCCAGTTCGACTGGGGCTTAGACATGGAAT
GTACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGCCA
GAATACACAAGCGAACGG
Found at i:25829645 original size:26 final size:26
Alignment explanation
Indices: 25829604--25829656 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25829594 TTGGTCCAAT
*
25829604 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
25829630 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25829656 C
1 C
25829657 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25829648 original size:705 final size:698
Alignment explanation
Indices: 25827871--25829692 Score: 1661
Period size: 711 Copynumber: 2.6 Consensus size: 698
25827861 CTAGTCGGAT
* * * * * * * *
25827871 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGAGGGCGCTCAGC
* * * * * * * * * * * *
25827936 C-AGTCAAAGAGGCATAATACGCAAG-CCAGGGATC-GATCTGGTGCCTCTCTGCGTGCTGTCGG
66 CGA-CCGAAGAGGCATAATGCACAAGTCGA-GGATCAG-CCCGATCCCCCTCTGCGTGCTGCCGA
** * * * * *
25827998 TCCCGCTGCCACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAGCTCCCT-ATGCCTAAG
128 TCCCGCTGCCACAACCCCCGATTCGACTGGGGCTTAAACATGGAATGAGCTCCCTCA-ACCTAAG
* * * * * * * * * * * * *
25828062 CCAACCCATGAAACGGGCATACGGTCGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGCCGGGGA
192 CCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGCCAGAATACACAAGCCGGGAA
** ** ** * * * ** * * *
25828127 TC-AGCCCGGTCCCCCCTATGTGCTGTCGATCCTGCTATCGCAACCCTCGGTCTTA-TTCGATCT
257 TCGA-CCTAGTCCCCCCTGCGTGCTACCGATCATACTATCGCAACCCCCAATC-CAGTCCAATCT
* * * *
25828190 TAGACTGGGAATGAACATCATATGCTTAGACTGGGGATGAATTTCGTATGCCTAAGCCAACCCAC
320 TAGACTGGGAATGAAC-TCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* ** * * * * *
25828255 AAAACGAGTGTGTGGGCGCTCAGCCAGTCGGAGAGGACGGCCAGAGAGGCATAATGCGCAAGCCG
384 GAAACGAGCATGCGGGCGCTCAACCAGCCGAAGAGGACGGCCAGAGAGGCATAATGCGCAAGCCA
* * * * *** * * *
25828320 GGGATCAGCCCGGTCCCCCTCTGCGTGCTATCGATCCTGTTGCCGGTCTTGCTACTACAACCATC
449 GGGATCAACCCGATCCCCCTCTGCATGCTACCGATCCCACTGCCGATCCTGCTACCACAACCATC
* * * *
25828385 GGTCTGGCTAGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCAT
514 AGTCTGGCTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAACCAACCCACGAAACGAGCAT
** * * * *
25828450 GCGGGTGCTTAGCCGGTCGGAGAGGCAGGATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACG
579 GCGGGCACTCAGCCGGTCGGAGAGGCAGAAT-CGCAAG-C---GA-CAGCCAGG------CTACG
* * *
25828515 TGCTGTCGATCCTGCTGCCACAACCCTCCATCTGGTCTGATCTTAGATTGGGAATGAACTCCATA
632 TGCTGTCGATCCTGCTGCCACAACCCTCCATCTAGTCCGATCTTAGACTGGGAATGAACTCCATA
25828580 TG
697 TG
** ** *
25828582 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGAGGGCGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGAGGGCGCTCAGC
** * * *
25828647 CGACCGAAGAGGCATAATGCGTAAGTCGAGGATCGGCTCGATCCCCTTCTGCGTGCTGCCGATCC
66 CGACCGAAGAGGCATAATGCACAAGTCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCC
*
25828712 CGCTGCCACAACCCTCGATTCGACTGGGGCTTAAACATGGAATGAGCTCCCTCAACCTAAGCCAA
131 CGCTGCCACAACCCCCGATTCGACTGGGGCTTAAACATGGAATGAGCTCCCTCAACCTAAGCCAA
* * * * * *
25828777 CCCACGAAACGAGCGTGCGGGCGCTCAATCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
196 CCCACGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGCCAGAATACACAAGCCGGGAATCGA
* ** * * * ** *
25828842 CCTAGTCCCCCCTGCGTGCTGCCGATCATGTTGTCGCAACCCTCGATCCAGTCTGATCTTAGCCT
261 CCTAGTCCCCCCTGCGTGCTACCGATCATACTATCGCAACCCCCAATCCAGTCCAATCTTAGACT
* *
25828907 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACG
326 GGGAATGAACT-CGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * *
25828972 AGCATGCGGTCGCTTAACC-GACCGAAGAGG-CTGGCCAGAGAGGCATAATGCGTAAGCCAGGGA
390 AGCATGCGGGCGCTCAACCAG-CCGAAGAGGAC-GGCCAGAGAGGCATAATGCGCAAGCCAGGGA
* * * * *
25829035 TCAACCCGATCCCTCTCTGCATGTTACCGATCCCACTGCCTATCCTGCTACCACAACCCTCAGTT
453 TCAACCCGATCCCCCTCTGCATGCTACCGATCCCACTGCCGATCCTGCTACCACAACCATCAGTC
* * *
25829100 TGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAACCAACCCACGAACCGAGCGTGCGG
518 TGGCTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAACCAACCCACGAAACGAGCATGCGG
* *
25829165 GCACTCAGTCGG-CTGGAGAGGCAGAAT-GC-A-C-A-AGCCAGG-TGCGTGCTGTCGATCCTGC
583 GCACTCAGCCGGTC-GGAGAGGCAGAATCGCAAGCGACAGCCAGGCTACGTGCTGTCGATCCTGC
* * * *
25829223 TGTCGCAACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
647 TGCCACAACCCTCCATCTAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * *
25829275 CTTAGACTGGGGATGAACTCGGTATGCCTAAGTGAACCCACAAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGAGGGCGCTCAGC
* * * * *
25829340 C-AGTCGGAGAGGCATAATTCACAAGTCGTGGATCAGCCC-AGTCCCCCTCTGCGTG-TAGTCGA
66 CGA-CCGAAGAGGCATAATGCACAAGTCGAGGATCAGCCCGA-TCCCCCTCTGCGTGCT-GCCGA
* * *
25829402 TCCCATTGCTAATCTTGCTACCACAACCCCCGGTTCGACTGTGGCTTAGACATGGAATGTA-CTC
128 TCCC---G-----C-TG---CCACAACCCCCGATTCGACTGGGGCTTAAACATGGAATG-AGCTC
* * * *
25829466 CGT-ATGCCTAAGCCAACCCACGAAACTAGCGTGCGGGCATTCAACCGACCGGAGAGCCAGAATA
180 CCTCA-ACCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGCCAGAATA
* * * * * *
25829530 CACAAGCTGGGAATCGGTCC-GGTCCCTCCTGCGTGCTACCGATCCTACTATCGTAACCCCCAAT
244 CACAAGCCGGGAATC-GACCTAGTCCCCCCTGCGTGCTACCGATCATACTATCGCAACCCCCAAT
*** *
25829594 TTGGTCCAATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCT
308 CCAGTCCAATCTTAGACTGGGAATGAACTC-GTATGCTTAGACTGGGGATGAACTCCGTATGCCT
* * *
25829659 AAGTCAACCCACGAAACAAGCGTGTGGGCGCTCA
372 AAGTCAACCCACGAAACGAGCATGCGGGCGCTCA
25829693 GCCGACCAGG
Statistics
Matches: 919, Mismatches: 163, Indels: 64
0.80 0.14 0.06
Matches are distributed among these distances:
692 3 0.00
693 170 0.18
696 1 0.00
700 5 0.01
701 1 0.00
702 3 0.00
704 2 0.00
705 221 0.24
706 5 0.01
708 1 0.00
709 2 0.00
710 5 0.01
711 494 0.54
712 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (698 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGAGGGCGCTCAGC
CGACCGAAGAGGCATAATGCACAAGTCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCC
CGCTGCCACAACCCCCGATTCGACTGGGGCTTAAACATGGAATGAGCTCCCTCAACCTAAGCCAA
CCCACGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGCCAGAATACACAAGCCGGGAATCGA
CCTAGTCCCCCCTGCGTGCTACCGATCATACTATCGCAACCCCCAATCCAGTCCAATCTTAGACT
GGGAATGAACTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCATGCGGGCGCTCAACCAGCCGAAGAGGACGGCCAGAGAGGCATAATGCGCAAGCCAGGGATCA
ACCCGATCCCCCTCTGCATGCTACCGATCCCACTGCCGATCCTGCTACCACAACCATCAGTCTGG
CTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAACCAACCCACGAAACGAGCATGCGGGCA
CTCAGCCGGTCGGAGAGGCAGAATCGCAAGCGACAGCCAGGCTACGTGCTGTCGATCCTGCTGCC
ACAACCCTCCATCTAGTCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:25830253 original size:11 final size:11
Alignment explanation
Indices: 25830237--25830275 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
25830227 AGGCTGTCTA
25830237 GTGATGCTCCG
1 GTGATGCTCCG
*
25830248 GTGATGCTTCG
1 GTGATGCTCCG
25830259 GTGATGCTCCG
1 GTGATGCTCCG
25830270 GTGATG
1 GTGATG
25830276 GTGCCCCGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.10, C:0.21, G:0.38, T:0.31
Consensus pattern (11 bp):
GTGATGCTCCG
Found at i:25830324 original size:17 final size:17
Alignment explanation
Indices: 25830302--25830341 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
25830292 AAATGTGGCA
25830302 CCAGCACATGCCCGAGC
1 CCAGCACATGCCCGAGC
25830319 CCAGCACATGCCCGAGC
1 CCAGCACATGCCCGAGC
25830336 CCAGCA
1 CCAGCA
25830342 TGTGCACCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.25, C:0.47, G:0.23, T:0.05
Consensus pattern (17 bp):
CCAGCACATGCCCGAGC
Found at i:25830575 original size:26 final size:26
Alignment explanation
Indices: 25830546--25830598 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25830536 CCGGTCTGAT
25830546 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
25830572 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25830598 C
1 C
25830599 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25830949 original size:26 final size:26
Alignment explanation
Indices: 25830913--25830964 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
25830903 CCGGTCCAAT
*
25830913 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25830939 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25830965 GCTAAGTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25832202 original size:26 final size:26
Alignment explanation
Indices: 25832173--25832225 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25832163 CCAGTCCGAT
*
25832173 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25832199 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25832225 C
1 C
25832226 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25832557 original size:26 final size:26
Alignment explanation
Indices: 25832528--25832578 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25832518 GGTTCGATCA
25832528 TAGAATGGGAATGAACTCCGTATGCT
1 TAGAATGGGAATGAACTCCGTATGCT
* *
25832554 TAGACTGGGGATGAACTCCGTATGC
1 TAGAATGGGAATGAACTCCGTATGC
25832579 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGAATGGGAATGAACTCCGTATGCT
Found at i:25832629 original size:353 final size:354
Alignment explanation
Indices: 25831976--25832629 Score: 857
Period size: 353 Copynumber: 1.9 Consensus size: 354
25831966 CCCTCTGCCT
* * **
25831976 GCTGCCAGTCCCGCTGCCACAACCCTTGGTCCGGTTGGGGCTTAGACATGGAATGAGCTCCCTAT
1 GCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATCAAATGAGCTCCCTAT
** ** * *
25832041 GCCTAAGCCAACCCACGAAACGGGCGTGCGAGCGCTCAGTCGGCCGGAGAGGCAAAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGAACGTGCGAGCGCTCAACCGGCCGGAGAGGCAAAATACACAAG
* * *
25832106 CCAGGGATCGGCCCGGTCCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCGGTCCAGTCCG
131 CCAGGGATAGGCCCGATCCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCAGTCCG
* *
25832171 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAAC
196 ATCATAGAATGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAAC
* ** ** *
25832236 CCATGAAAAGACTGTATTGGCGCTTAGCCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGAC
261 CCACGAAAAGACTGTACGGGCGCTTAGCCGACCAGAGAGGCATAATGCGCAAGTCGGGGATCGAC
25832301 TCGGTCCCCCTCTATGAGCTACCGATCCC
326 TCGGTCCCCCTCTATGAGCTACCGATCCC
* * ** * *
25832330 GCTGCCAGTCCTGCTGCCACAACCCTCGGTCGGGCT-GGGCTTAGATGTCAAATGTA-CTTCGTA
1 GCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATCAAATG-AGCTCCCTA
* * * * * * * *
25832393 TGCCTAAGTCAACCCATGAAACGAATGTTCGGGCGCTCAACCGGTCGGAGAGGCAGAATACATAA
65 TGCCTAAGCCAACCCACGAAACGAACGTGCGAGCGCTCAACCGGCCGGAGAGGCAAAATACACAA
* * * * * *
25832458 GCCGGGGATAGGCTCGATCCCCCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGGTTC
130 GCCAGGGATAGGCCCGATCCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCAGTCC
*
25832523 GATCATAGAATGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
195 GATCATAGAATGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAA
* *
25832588 CCCACGAAATGAGC-GTGCGGGCG-TTCAGCCGACCAGAGAGGC
260 CCCACGAAAAGA-CTGTACGGGCGCTT-AGCCGACCAGAGAGGC
25832630 CGGTCAGAGA
Statistics
Matches: 253, Mismatches: 44, Indels: 7
0.83 0.14 0.02
Matches are distributed among these distances:
352 2 0.01
353 217 0.86
354 34 0.13
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (354 bp):
GCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATCAAATGAGCTCCCTAT
GCCTAAGCCAACCCACGAAACGAACGTGCGAGCGCTCAACCGGCCGGAGAGGCAAAATACACAAG
CCAGGGATAGGCCCGATCCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCGATCCAGTCCG
ATCATAGAATGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAAC
CCACGAAAAGACTGTACGGGCGCTTAGCCGACCAGAGAGGCATAATGCGCAAGTCGGGGATCGAC
TCGGTCCCCCTCTATGAGCTACCGATCCC
Found at i:25833263 original size:26 final size:26
Alignment explanation
Indices: 25833212--25833264 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25833202 CCGATTTGAT
* * *
25833212 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25833238 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25833264 C
1 C
25833265 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25833527 original size:344 final size:344
Alignment explanation
Indices: 25833026--25833659 Score: 873
Period size: 344 Copynumber: 1.8 Consensus size: 344
25833016 TGCCGATCCC
* *
25833026 GCTGCCACAACCCTCAGTCCAGTTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAGCTCCATATGCCTAAGCCAAC
* * * * *** * * *
25833091 CCATGAAACGAGCGTGCAGGCTTTCAGTTAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGT
66 CCACGAAACGAGCGTACAGGCCTTAACCGAGCCGAAGAGGCAGAATGAGCAAGCCAGGGATCGGC
* * * * * *
25833156 TCGGTCACCCCTGCGTGCTGTCGATCCTACTGTCGTAACCCTCGATCCGATTTGATCTTAGACTG
131 TCGATCACCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGATCCAATTCGATCTTAGACTG
* *
25833221 GGAATGAA-TTTCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTTAACCCATGAAACG
196 GGAATGAACTTT-GTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACG
* * *
25833285 AGCGTGCGGGTGCTCAACGGACCAGAGAGGCTGGTCGGAGAGGCATAATGCGCAAGCTGGGGATT
260 AGAGTGCGGGCGCTCAACCGACCAGAGAGGCTGGTCGGAGAGGCATAATGCGCAAGCTGGGGATT
25833350 AGCCTAGTCCCCCTCTGCGT
325 AGCCTAGTCCCCCTCTGCGT
* * * *
25833370 GCTGCCACAACCCTCAGTTC-GACTGGGGCTTAGACGTGGAATGTA-CTCCATATGCCTAAGTCG
1 GCTGCCACAACCCTCAGTCCAG-CTGGGGCTTAGACATGGAATG-AGCTCCATATGCCTAAGCCA
* * *
25833433 ACCCACGAAACGAGCGTACGGGCGCTTAACCGA-CCGAAGAGGTAGAATGAGCAAGCCAGGGATT
64 ACCCACGAAACGAGCGTACAGGC-CTTAACCGAGCCGAAGAGGCAGAATGAGCAAGCCAGGGATC
* *
25833497 GGCTCGATCCCCCCTACGTGCTAG-CGATCCTATTGCCGCAACCCTCGATCCAATTCGATCTTAG
128 GGCTCGATCACCCCTACGTGCT-GTCGATCCTACTGCCGCAACCCTCGATCCAATTCGATCTTAG
* *
25833561 ACTGGGAATGAACTTTGTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
192 ACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAA
*
25833626 ACGTGAGTGCGGGCGCTCAACCGACCAGAGAGGC
257 ACGAGAGTGCGGGCGCTCAACCGACCAGAGAGGC
25833660 AGGATGCGTA
Statistics
Matches: 250, Mismatches: 35, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
343 1 0.00
344 240 0.96
345 9 0.04
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (344 bp):
GCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAGCTCCATATGCCTAAGCCAAC
CCACGAAACGAGCGTACAGGCCTTAACCGAGCCGAAGAGGCAGAATGAGCAAGCCAGGGATCGGC
TCGATCACCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGATCCAATTCGATCTTAGACTG
GGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGA
GAGTGCGGGCGCTCAACCGACCAGAGAGGCTGGTCGGAGAGGCATAATGCGCAAGCTGGGGATTA
GCCTAGTCCCCCTCTGCGT
Found at i:25833606 original size:26 final size:26
Alignment explanation
Indices: 25833556--25833608 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25833546 CCAATTCGAT
**
25833556 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25833582 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25833608 C
1 C
25833609 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25835893 original size:26 final size:26
Alignment explanation
Indices: 25835864--25835916 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25835854 CCGATCCAAT
*
25835864 CTTAGGCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25835890 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25835916 C
1 C
25835917 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25837755 original size:26 final size:26
Alignment explanation
Indices: 25837719--25837771 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25837709 CTGGTCTGAT
*
25837719 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25837745 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25837771 C
1 C
25837772 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25838663 original size:26 final size:26
Alignment explanation
Indices: 25838627--25838678 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
25838617 TCGGTTCGAT
25838627 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
25838653 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
25838679 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:25840074 original size:26 final size:26
Alignment explanation
Indices: 25840045--25840097 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25840035 GGCTCAAAAT
*
25840045 CTTAGAC-TAGGAATGAGCTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
25840071 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
25840097 C
1 C
25840098 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:25840561 original size:26 final size:26
Alignment explanation
Indices: 25840525--25840577 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25840515 CCGATCCGAT
* *
25840525 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
25840551 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
25840577 C
1 C
25840578 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:25840922 original size:26 final size:26
Alignment explanation
Indices: 25840893--25840945 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25840883 CTGATCCAAT
*
25840893 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25840919 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25840945 C
1 C
25840946 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25841936 original size:159 final size:159
Alignment explanation
Indices: 25841642--25842144 Score: 372
Period size: 159 Copynumber: 3.2 Consensus size: 159
25841632 GCTCCGTATG
* *
25841642 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * **
25841707 CGGCTGAGGAGGCAAAATGCGCAAGCCGGGGATCGACCCAATCCCCCACTTCGTGCTATTAATCC
66 CAGCCGAAGAGGCAAAATGCACAAGCCAGGGATCGACCCAATCCCCCACTGCGTGCTACCAATCC
**
25841772 TACTGCCGTAACCCTCGATCTGGTCAGAT
131 TACTGCCACAACCCTCGATCTGGTCAGAT
* * * * *
25841801 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGTGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * ** * **
25841865 CCAGCCGAAGAGGCATAATGCACAAGCTAGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGGTC
65 CCAGCCGAAGAGGCAAAATGCACAAGCCAGGGATCGACCCAATCCCCCACTGCGTGCTACCAATC
* * * * **
25841930 GC-ACTGCCACAACCCTCAGACCAGCT-GGGG
130 -CTACTGCCACAACCCTC-GATCTGGTCAGAT
* * ** * * * * * * *
25841960 CTTAGACATGGAATGAGCTCCCTATGCCCAAACCAACCAACGAAACGGGCGTACGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* ** * ** * ** * *
25842025 CGGCC-AGAGAGATAGAATGCGTAAG-TAGGGGATCGACCCGGTCCCCC-CTGCGTGCTATCGAT
66 CAGCCGA-AGAGGCAAAATGCACAAGCCA-GGGATCGACCCAATCCCCCACTGCGTGCTACCAAT
** * * *
25842087 CCTACTATCGCAACCCTCGGTCTGGTCTGAT
129 CCTACTGCCACAACCCTCGATCTGGTCAGAT
*
25842118 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
25842145 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 68, Indels: 19
0.75 0.19 0.05
Matches are distributed among these distances:
157 6 0.02
158 54 0.20
159 200 0.75
160 7 0.03
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CAGCCGAAGAGGCAAAATGCACAAGCCAGGGATCGACCCAATCCCCCACTGCGTGCTACCAATCC
TACTGCCACAACCCTCGATCTGGTCAGAT
Found at i:25842154 original size:26 final size:26
Alignment explanation
Indices: 25842118--25842170 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25842108 CTGGTCTGAT
25842118 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25842144 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25842170 C
1 C
25842171 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25842537 original size:26 final size:26
Alignment explanation
Indices: 25842487--25842537 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
25842477 CGCTCTGATT
*
25842487 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
25842513 TTAGACTGGGGATGAACTCTATATG
1 TTAGACTGGGAATGAACTCCATATG
25842538 TCTAAGTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:25842890 original size:26 final size:26
Alignment explanation
Indices: 25842840--25842892 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25842830 TCGGTCTGAT
*
25842840 CTTAGACTGGGAATGATCTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
25842866 CTTAGACTGGGGATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
25842892 C
1 C
25842893 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:25842972 original size:354 final size:354
Alignment explanation
Indices: 25842068--25842995 Score: 939
Period size: 354 Copynumber: 2.6 Consensus size: 354
25842058 CGACCCGGTC
* * * *
25842068 CCCCCTGCGTGCTATCGATCCTACTATCGCAACCCTCG-GTCTGGTCTGATCTTAGACTGGGAAT
1 CCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTTGATTC-GGTCTGATCTTAGACTGGGAAT
* * *
25842132 GAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTG
65 GAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * * **
25842197 CGGACGCTCAGCCGGTCGGAGAGGCCAGCCAGAGAGGCATATTATGCAAGTCGGGGATCAGCTTG
130 CGGGCGCTCAGCCGGCCGGAGA-G---G-CAGA-ATGCGTA--A-GC---T-GGGGATTAACCCG
* ** ** * *
25842262 ATCCCCCTCTGCATGCTGTCGATGTCGCTGCCAGTCCTACTACCACAACCCTCGGTCTGACTGGG
182 ATCCCCCTCTACATGCTACCGATCCCGCTACCAGTCCTACTACCACAACCCTCAGTCTGACTGGG
* *
25842327 GCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGATCGTGTGAGCGCTCAG
247 GCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACCCATGAAACGATCGTGCGAGCGCTCAG
* * * * * *
25842392 CCGGTCAGAGAGGCAGAATGCGTAAATCGAGGATCGATCTGGT
312 CCGGTCAGAGAGGCAAAATACGTAAAGCCAGGATCGAGCTAGT
* * * * * *
25842435 CTCCCCTGCGTGCCGTCGATCCTGCTGTCACAATCCTTGATTCGCTCTGATTTTAGACTGGGAAT
1 C-CCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTTGATTCGGTCTGATCTTAGACTGGGAAT
* * * * *
25842500 GAACTCCGTATGCTTAGACTGGGGATGAAC-TCTATATGTCTAAGTTAACCCATGAAACGAGCAT
65 GAACTCCGTATGCTTAGACTGGGGATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGT
** * * * * ** * * *
25842564 GTAGGTGCTCAGCTGGCCGAAGAGGCATAATAAGCAAGCCGGGGATCAACCCGATCCCCCT-TAC
129 GCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCTGGGGATTAACCCGATCCCCCTCTAC
* * * * * * *
25842628 GTGGTACCGATCCCTCTACCGGTCCTGCTGCCACAACCCTCAGTCTGATTGGGGCTTAGACGTGG
194 ATGCTACCGATCCCGCTACCAGTCCTACTACCACAACCCTCAGTCTGACTGGGGCTTAGACGTGG
* * * *
25842693 AATGTACTCCATATGCCTAAGCCAACCCATGAAATGAGT-GTGCGGGCGCTTAGCCGGTCGGAGA
259 AATGTACTCCATATGCCTAAGCCAACCCATGAAACGA-TCGTGCGAGCGCTCAGCCGGTCAGAGA
* * **
25842757 GGCAAAATACG-CAAGCCAGGGTTTAGCTCAGT
323 GGCAAAATACGTAAAGCCAGGATCGAGCT-AGT
* * *
25842789 CCCTCCTGGGTGCTGCCGATCCTGCTACCGCAACCCTTGATTCGGTCTGATCTTAGACTGGGAAT
1 CCC-CCTGCGTGCTGTCGATCCTGCTATCGCAACCCTTGATTCGGTCTGATCTTAGACTGGGAAT
* * *
25842854 GATCTCTGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTG
65 GAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * *
25842919 CGGGCGCTCAACCGGCCGGAGAGGCAGAATGCGTAAGCTGGGGATTGACCCGATCCCCCCCTGCG
130 CGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCTGGGGATTAACCCGATCCCCCTCTACA
*
25842984 TGCTATCGATCC
195 TGCTACCGATCC
25842996 TGCTGCTGTA
Statistics
Matches: 454, Mismatches: 99, Indels: 28
0.78 0.17 0.05
Matches are distributed among these distances:
353 12 0.03
354 274 0.60
355 34 0.07
359 2 0.00
360 1 0.00
362 2 0.00
363 3 0.01
364 1 0.00
367 3 0.01
368 120 0.26
369 2 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (354 bp):
CCCCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTTGATTCGGTCTGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
GGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCTGGGGATTAACCCGATCCCCCTCTACAT
GCTACCGATCCCGCTACCAGTCCTACTACCACAACCCTCAGTCTGACTGGGGCTTAGACGTGGAA
TGTACTCCATATGCCTAAGCCAACCCATGAAACGATCGTGCGAGCGCTCAGCCGGTCAGAGAGGC
AAAATACGTAAAGCCAGGATCGAGCTAGT
Found at i:25843168 original size:159 final size:155
Alignment explanation
Indices: 25842866--25843417 Score: 561
Period size: 159 Copynumber: 3.5 Consensus size: 155
25842856 TCTCTGTATG
* * * *
25842866 CTTAGACTGGGGATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
** * * *
25842931 CGGCCGGAGAGGCAGAATGCGTAAGCTGGGGATTGACCCGATCCCCCCCTGCGTGCTATCGATCC
66 CGATCGGAGAGGTAGAATGCGTAAGCCGGGGA-TGACCCGAT--CCCCCTGCGTGCTGTCGATCC
* * *
25842996 TGCTGCTGTAACCCTCAGTTTGATCTGAT
128 TACTGCCGCAACCCTCAGTTTGAT-TGAT
* * * * * *
25843025 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTACGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * *
25843090 CGATCGAAGAGGTATAATGCGCAAGCCGGGGATCGACCCGATCCCTCTCTGTGTGCTGTCGGTCC
66 CGATCGGAGAGGTAGAATGCGTAAGCCGGGGAT-GACCCGATCCC-C-CTGCGTGCTGTCGATCC
* * * **
25843155 CACTGCCACAACCCTCAGTCTGATTGGGG
128 TACTGCCGCAACCCTCAGTTTGATT-GAT
* * * * *
25843184 CTTAGACAT-GGAATGAGCTCCCTATTCCTAAGCCAACCCATGAAACGAGCGTCCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* *
25843248 CCGATCGGAGAGGTAGAATGCGTAATCCGGGGATTAGCCCGATCCCCCTGCGTGCTGTCGATCCT
65 CCGATCGGAGAGGTAGAATGCGTAAGCCGGGGATGA-CCCGATCCCCCTGCGTGCTGTCGATCCT
* ** *
25843313 ACTGCCGCAACCCT-TGATCCAGTTTGAT
129 ACTGCCGCAACCCTCAG-T-TTGATTGAT
* * * * * *
25843341 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
25843406 CGA-CTGGAGAGG
66 CGATC-GGAGAGG
25843418 CCGATCGGAG
Statistics
Matches: 322, Mismatches: 61, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
156 3 0.01
157 98 0.30
158 9 0.03
159 211 0.66
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (155 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGATCGGAGAGGTAGAATGCGTAAGCCGGGGATGACCCGATCCCCCTGCGTGCTGTCGATCCTAC
TGCCGCAACCCTCAGTTTGATTGAT
Found at i:25844457 original size:157 final size:158
Alignment explanation
Indices: 25844074--25844523 Score: 498
Period size: 157 Copynumber: 2.8 Consensus size: 158
25844064 AGCTCCGTAT
* * * *
25844074 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
25844139 CCTGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCCAGCATGCCGTCGATC
66 CCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTC-GCGTGCTGTCGATC
** * *
25844204 CTGCTGCTGCAACCCTCAGTCTATTCTGA
130 CTGCTGCCACAACCCTCAGTCCATGCTGA
* ** * * * * *
25844233 TCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
25844298 CCGGCTGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTCGTGCTGTCGATCC
66 CCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCGCGTGCTGTCGATCC
*
25844363 TGCTGCCACAA-CCTC-GATCCA-GCTGGG
131 TGCTGCCACAACCCTCAG-TCCATGCT-GA
* *
25844390 GCTTAGACAAGGAATGAGA-TCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCA
1 GCTTAGACAAGGAATGA-ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
25844454 GCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATC-AGCTC-AGTCCCCTTGGCGTGCTGTCGA
65 GCCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGA-TCCCCCTCGCGTGCTGTCGA
25844517 TCCTGCT
128 TCCTGCT
25844524 ATCGCAACAC
Statistics
Matches: 241, Mismatches: 45, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
156 5 0.02
157 116 0.48
158 22 0.09
159 98 0.41
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCGCGTGCTGTCGATCC
TGCTGCCACAACCCTCAGTCCATGCTGA
Found at i:25844933 original size:26 final size:26
Alignment explanation
Indices: 25844904--25844956 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25844894 CCGGTCTGAT
*
25844904 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25844930 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25844956 C
1 C
25844957 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25845040 original size:355 final size:343
Alignment explanation
Indices: 25844234--25845075 Score: 981
Period size: 355 Copynumber: 2.4 Consensus size: 343
25844224 CTATTCTGAT
* * * * * *
25844234 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * *
25844299 CGGCTGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTCGTGCTGTCGAT--C
66 CGGCTGAAGAGGCATAATGCGCAAGCCGGGGATCGACTCGATCCCCCTCTCGTACTGTCGATCCC
25844362 CTGCTGCCACAACCTCGATCCAGCTGGGGCTTAGACAAGGAATGAGATCCCTATGCCTAAGCCAA
131 CTGCTGCCACAACCTCGATCCAGCTGGGGCTTAGACAAGGAATGAGATCCCTATGCCTAAGCCAA
* * * * * *
25844427 CCCACGAAACGAGCGTGCGGACGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCAG
196 CCCACGAAACAAGCGTGCGGACACTCAGCCGACCGGAAAGGCAGAATACGCAAGCCGGGGATCAC
* * **
25844492 CTCAGTCCCCTTGGCGTGCTGTCGATCCTGCTATCGCAACACTTGATTTGGTCTGATCTTAGATC
261 CTCAGTCCCCCTGGCGTGCTGTCGATCCTGCTATCGCAACACTCGATCCGGTCTGATCTTAGATC
25844557 GGGAATGAACTCCGTATG
326 GGGAATGAACTCCGTATG
* * * * *
25844575 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGTGCTCCGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * ** * *
25844640 CGACTAAAGAGGCATAATATGCAAGTCGGGGATCAGCCT-GATCCCCCTCTACGTACTGTCGATC
66 CGGCTGAAGAGGCATAATGCGCAAGCCGGGGATC-GACTCGATCCCCCTCT-CGTACTGTCGATC
* *
25844704 CCGCTGCAGGTCCTGTTGCCACAACCCTCTG-TCC-GACTGGGGCTTAGACATGGAATG-TA-CC
129 CC-CT----G--C---TGCCACAA-CCTC-GATCCAG-CTGGGGCTTAGACAAGGAATGAGATCC
* * *
25844765 CTGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAGCCGATCGGAAAGGCAGAATA
181 C--TATGCCTAAGCCAACCCACGAAACAAGCGTGCGGACACTCAGCCGACCGGAAAGGCAGAATA
* * *
25844830 CGCAAGCCGGGGATCGACCT-GGTCCCTCCTGG-GTGCTGTCGATCCTGCT-GCTGCAACCCTCG
244 CGCAAGCCGGGGATC-ACCTCAGTCCC-CCTGGCGTGCTGTCGATCCTGCTATC-GCAACACTCG
*
25844892 ATCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATG
306 ATCCGGTCTGATCTTAGATCGGGAATGAACTCCGTATG
* *
25844930 CTTAGACTGGGGATGAACTCCGTATGCCTAAG-CTAACCCACGAAACGAGTGTGCGGGCGCTCAA
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
25844994 TCGGCTGAAGAGGTAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCCCTGCGTACTGTCGAT-
65 TCGGCTGAAGAGGCATAATGCGCAAGCCGGGGATCGACTCGATCCCCCTCT-CGTACTGTCGATC
* *
25845058 -CCTGCTACCGCAACCTCG
129 CCCTGCTGCCACAACCTCG
25845076 GTCTGATTTG
Statistics
Matches: 419, Mismatches: 58, Indels: 48
0.80 0.11 0.09
Matches are distributed among these distances:
341 94 0.22
342 17 0.04
343 6 0.01
344 1 0.00
345 2 0.00
346 1 0.00
348 1 0.00
349 1 0.00
351 1 0.00
352 2 0.00
353 4 0.01
354 15 0.04
355 266 0.63
356 8 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGGCTGAAGAGGCATAATGCGCAAGCCGGGGATCGACTCGATCCCCCTCTCGTACTGTCGATCCC
CTGCTGCCACAACCTCGATCCAGCTGGGGCTTAGACAAGGAATGAGATCCCTATGCCTAAGCCAA
CCCACGAAACAAGCGTGCGGACACTCAGCCGACCGGAAAGGCAGAATACGCAAGCCGGGGATCAC
CTCAGTCCCCCTGGCGTGCTGTCGATCCTGCTATCGCAACACTCGATCCGGTCTGATCTTAGATC
GGGAATGAACTCCGTATG
Found at i:25845090 original size:184 final size:184
Alignment explanation
Indices: 25844767--25845114 Score: 432
Period size: 184 Copynumber: 1.9 Consensus size: 184
25844757 AATGTACCCT
* * *
25844767 GTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAGCCGATCGGAAAGGCAGAATACG
1 GTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGAGCGGAAAGGCAGAATACG
* * * * * *
25844832 CAAGCCGGGGATCGACCTGGTCCCTCCTGGGTGCTGTCGATCCTGCTGCTGCAACCCTCGATCCG
66 CAAGCCGGGGATCGACCTGATCCCCCCTGCGTACTGTCGATCCTGCTACCGCAACCCTCGATCCG
* * *
25844897 GTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCC
131 ATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCC
* * * * * * * *
25844951 GTATGCCTAAGCTAACCCACGAAACGAGTGTGCGGGCGCTCAATCG-GCTGAAGAGGTAGAATGC
1 GTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGAGCGGAA-AGGCAGAATAC
*
25845015 GCAAGCCGGGGATCGA-CTCGATCCCCCCCTGCGTACTGTCGATCCTGCTACCGCAA-CCTCGGT
65 GCAAGCCGGGGATCGACCT-GAT-CCCCCCTGCGTACTGTCGATCCTGCTACCGCAACCCTCGAT
* * *
25845078 CTGATTTGATCTTAGACTAGGAATGAACTCTGTATGC
128 CCGATCTGATCTTAGACTAGGAATGAACTCCGTATGC
25845115 ATAAGTCAAC
Statistics
Matches: 137, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
183 6 0.04
184 103 0.75
185 28 0.20
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (184 bp):
GTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGAGCGGAAAGGCAGAATACG
CAAGCCGGGGATCGACCTGATCCCCCCTGCGTACTGTCGATCCTGCTACCGCAACCCTCGATCCG
ATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCC
Found at i:25846155 original size:367 final size:355
Alignment explanation
Indices: 25845224--25846197 Score: 971
Period size: 353 Copynumber: 2.7 Consensus size: 355
25845214 CGGTCCTGCT
* ** * ** *
25845224 GGGGCTTAGACATGAAATG-AGCTCCCTATTCCTAAGCCAACCCATGAAACG-GACGTATAGGCC
1 GGGGCTTAGACATGGAATGCA-CTCTGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCAGGCA
* * ** * * *
25845287 CTCAGCTGGCTAGAGAGGCAGAATGCGTAATTCGAGGATCGGCCCAGTCCCCCCTGTATGCTGCC
64 CTCAGCTGGCTCGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTCCCCCCTGTATGCTGTC
* * * * *
25845352 AATCCTGCATCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
129 GATCCTGCATCGCAACCCTCGATCCGGTCT-ATCTTAGACTGGGAATGAACTCTATATGCTTAGA
* * * * *
25845417 CTAGGGATGAACTCCGTATACCTAAGTCAACCAACAAAATGAGCGTGCGGGCGCT---CTGCCGA
193 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGCCGA
* * * * * * * *
25845479 CCGGAGAGGCATAATGCACAAGTCGAGGATAACCTTGGTCCGCGTTTGCGTGCTGTCGATTTTGC
258 CCGGAGAGGCATAATGCACAAGCCGAGGATAACCTCGATCCGCCTCTGCGTGCTATCGATCTCGC
* *
25845544 TACCGATCATGCTGCCACAACCCTCGGTCTGAC
323 TACCGATCATGCTGCCACAACCCTCGATCGGAC
* * * * * *
25845577 GGGGCTTGGACGTGGAATGTACTCTGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCACT
1 GGGGCTTAGACATGGAATGCACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACT
* * * * * * *
25845642 CAGC-CGATCGGAGAGGCAGAATGCGCACGCTAAGTATCGGCCTGGT-CCCCCTGTATACTGTCG
66 CAGCTGGCTC-GAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTCCCCCCTGTATGCTGTCG
* * *
25845705 ATCCTGC-TGCCGCAACCCTCGATTCGGTTCGATCTTAGACTGGGAATGAACTCTATACGCTTAG
130 ATCCTGCAT--CGCAACCCTCGATCCGG-TCTATCTTAGACTGGGAATGAACTCTATATGCTTAG
* *
25845769 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGTGCTCAGCCGACC
192 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCG-CC
* * *
25845834 GGAGAGGCCGGTTGAAGAGGCATAATGCGCAAGCCGGGGATCAGCC-CGATCC-CCTCTGCGTGC
256 ---GA--CC-G--G-AGAGGCATAATGCACAAGCCGAGGAT-AACCTCGATCCGCCTCTGCGTGC
* * * ** **
25845897 TATCGATCTCGCTGCCGGTCTTGCTGCTGCAACCCTCGATCCGGTT
311 TATCGATCTCGCTACCGATCATGCTGCCACAACCCTCGAT-CGGAC
* * * * **
25845943 GGGTCTTAGACATGGAATGCACT-TCGTATGCCTACGCCTACTCATGAAACGAGCGTGCAGGTGC
1 GGGGCTTAGACATGGAATGCACTCT-GTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCAC
** **
25846007 TCAGCTGGCTCGAGAGGCAGAATGCGCAAGCCAAGGATCACCCCGGTCCCCCCTGCGTGCTGTCG
65 TCAGCTGGCTCGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTCCCCCCTGTATGCTGTCG
* **
25846072 ATCCTGCAATCGCAACCCTCGATCCGGTCCTATCTTAGACTAGGAATGAACTCTGCATGCTTAGA
130 ATCCTGC-ATCGCAACCCTCGATCCGGT-CTATCTTAGACTGGGAATGAACTCTATATGCTTAGA
* * *
25846137 ATGGGGATGAACTCCGTATGCCTAGGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
193 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCG
25846198 GCTGAAGAGG
Statistics
Matches: 499, Mismatches: 95, Indels: 40
0.79 0.15 0.06
Matches are distributed among these distances:
351 1 0.00
352 23 0.05
353 174 0.35
354 4 0.01
356 2 0.00
357 2 0.00
360 2 0.00
362 2 0.00
363 1 0.00
365 42 0.08
366 115 0.23
367 130 0.26
369 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (355 bp):
GGGGCTTAGACATGGAATGCACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACT
CAGCTGGCTCGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTCCCCCCTGTATGCTGTCGA
TCCTGCATCGCAACCCTCGATCCGGTCTATCTTAGACTGGGAATGAACTCTATATGCTTAGACTG
GGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGCCGACCG
GAGAGGCATAATGCACAAGCCGAGGATAACCTCGATCCGCCTCTGCGTGCTATCGATCTCGCTAC
CGATCATGCTGCCACAACCCTCGATCGGAC
Found at i:25847672 original size:159 final size:159
Alignment explanation
Indices: 25847377--25847742 Score: 364
Period size: 159 Copynumber: 2.3 Consensus size: 159
25847367 GCTTAAACAT
* * * * *
25847377 GGAATGAACTCCGTATGCCTAAGCGAACCCACGAAACGAGTGTGCGGGCACTTAGCAAGCTGGAT
1 GGAATGAACTCCGTATGCATAAGCGAACCCACGAAACGAGCGTGCGGGCACTGAGCAAGCTGAAG
** * * * * *
25847442 AGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCCCCGACGTGCTATCGATCCTGCTGCCGC
66 AGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCCGACATGCTATCGATCCCGCCGCCAC
*
25847507 ATCCCTCGGTCCGATCTGATCTTATACTG
131 AACCCTCGGTCCGATCTGATCTTATACTG
* * **
25847536 GGAATGAACTTCGTATGCATAAGTC-AACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGCTGAA
1 GGAATGAACTCCGTATGCATAAG-CGAACCCACGAAACGAGCGTGCGGGCACTGAGCAAGCTGAA
* * * * * *
25847600 GAGGCATAATGCACAAGTCGAGGATCGACCCGGTCCCCCTCTG-CATGCTGTCGGTCCCGCCGCC
65 GAGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCC-CCGACATGCTATCGATCCCGCCGCC
* ** *
25847664 ACAACCCTCGGTCC-AGCTGGGGCTTAGACAT-
129 ACAACCCTCGGTCCGATCT-GATCTTATAC-TG
* * * * *
25847695 GGAAT-AAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGG
1 GGAATGAA-CTCCGTATGCATAAGCGAACCCACGAAACGAGCGTGCGGG
25847743 AGCTCAGTCG
Statistics
Matches: 169, Mismatches: 32, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
158 6 0.04
159 159 0.94
160 4 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCATAAGCGAACCCACGAAACGAGCGTGCGGGCACTGAGCAAGCTGAAG
AGGCAGAATGCACAAGCCGAGGATCGACCCGATCCCCCCCGACATGCTATCGATCCCGCCGCCAC
AACCCTCGGTCCGATCTGATCTTATACTG
Found at i:25847880 original size:26 final size:26
Alignment explanation
Indices: 25847844--25847896 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25847834 CCGGTCCGAT
* *
25847844 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
25847870 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
25847896 C
1 C
25847897 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:25848584 original size:26 final size:26
Alignment explanation
Indices: 25848555--25848604 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
25848545 GGCTCAAAAT
**
25848555 CTTAGAC-TGGGAATGTGCTCCGTACG
1 CTTAGACAT-GGAATGAACTCCGTACG
25848581 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
25848605 TGCCTATGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTACG
Found at i:25849441 original size:26 final size:26
Alignment explanation
Indices: 25849412--25849464 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25849402 CCGGTTCGAT
25849412 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25849438 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25849464 C
1 C
25849465 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25850552 original size:159 final size:157
Alignment explanation
Indices: 25850161--25850609 Score: 458
Period size: 159 Copynumber: 2.8 Consensus size: 157
25850151 AGCTCTATAT
* * *
25850161 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
25850226 CCGATCGGAGAGGCAGAATGCGCAAGTTGGGGATC-GACTCGATCCACCCAC-ACGTGCTGTCAA
66 CCGA-CCGAAAGGCATAATGCGCAAG-TCGGGATCAG-CCCGATCC-CCCTCTGCGTGCTGTCAA
* * *
25850289 TCCTGCTGCCACATCCCTCGATTGGGTCTGA
127 TCCCGCTGCCACAACCCTCGATTGGCTCTGA
* * * * *
25850320 TCTTAGAC-TGGGAATGAGCTCCGTATGCATAAGTCAACCCATAAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAGCTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCA
* * *
25850384 GCCGGCCGAAATGGCATAATGCGCAAGGCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCAAT
65 GCCGACCGAAA-GGCATAATGCGCAAGTC-GGGATCAGCCCGATCCCCCTCTGCGTGCTGTCAAT
*
25850449 CCCGCTGCCACAACCCTC-AGTCTGGCT-TGG
128 CCCGCTGCCACAACCCTCGA-T-TGGCTCTGA
* * * ** * *
25850479 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTATGGGTGCTCAA
1 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAG
* * * * *
25850544 CCGACCGAAGAGGGATAATACGCAAGTCGAGGATCAACCCGATCCCCTTCTGCGTGCTGTCGATC
66 CCGACCGAA-AGGCATAATGCGCAAGTCG-GGATCAGCCCGATCCCCCTCTGCGTGCTGTCAATC
25850609 C
129 C
25850610 TGCTACCGGT
Statistics
Matches: 238, Mismatches: 42, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
158 11 0.05
159 220 0.92
160 7 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAAGGCATAATGCGCAAGTCGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCAATCCC
GCTGCCACAACCCTCGATTGGCTCTGA
Found at i:25851035 original size:26 final size:26
Alignment explanation
Indices: 25850999--25851051 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25850989 CCAGTTCGAT
*
25850999 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
* *
25851025 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
25851051 C
1 C
25851052 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:25852117 original size:159 final size:157
Alignment explanation
Indices: 25851748--25852178 Score: 560
Period size: 159 Copynumber: 2.7 Consensus size: 157
25851738 AGCTCTGTAT
* * * *
25851748 GCTTAGACATGGATTGAGCTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGTAGGCGCTCAG
1 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
* * * *
25851813 CCGGTCGGAGAGGCAGAGTGCGCAAGCCGGGGATCGACCCAATCCCCCCTGCATGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCC
* *
25851878 TGCTACCACACCCTCAGTCTGATCTGA
131 CGCTACCACACCCTCAGTCCGATCTGA
* * * * * *
25851905 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGTGGGCATTTA
1 GCTTAGACAT-GGAATGAGCTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCA
* * * * * * *
25851969 GCCAGTCGAACAGGCATAATGCGTAAGTCGGGGATCGACCCGGTCCCCCGCTGCATGTTGTCGGT
65 GCCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCC-CTGCATGCTGTCGAT
*
25852034 CCCGCTACCACAACCCTCAGTCCGA-CTGGG
129 CCCGCTACCAC-ACCCTCAGTCCGATCT-GA
* * *
25852064 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
*
25852129 CCGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCT
66 CCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCT
25852179 ATGTGCTGTC
Statistics
Matches: 230, Mismatches: 39, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
156 1 0.00
157 92 0.40
158 27 0.12
159 109 0.47
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
CCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCC
CGCTACCACACCCTCAGTCCGATCTGA
Found at i:25852240 original size:26 final size:27
Alignment explanation
Indices: 25852211--25852270 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 27
25852201 CCGATCGAAT
25852211 CTTAGTCTGGGAATGAACTCCGTAT-C
1 CTTAGTCTGGGAATGAACTCCGTATGC
* *
25852237 CTTAGACTGGGGATGAACTCCGTATGC
1 CTTAGTCTGGGAATGAACTCCGTATGC
*
25852264 CTAAGTC
1 CTTAGTC
25852271 AACCCACGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.28
Consensus pattern (27 bp):
CTTAGTCTGGGAATGAACTCCGTATGC
Found at i:25852606 original size:26 final size:26
Alignment explanation
Indices: 25852577--25852629 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25852567 CCGGTTCGAT
*
25852577 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
25852603 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
25852629 C
1 C
25852630 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:25853684 original size:159 final size:157
Alignment explanation
Indices: 25853325--25853756 Score: 492
Period size: 159 Copynumber: 2.7 Consensus size: 157
25853315 AGCTCCGTAT
* * * *
25853325 GCTTAGACATGGATTGAGCTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * *
25853390 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCTACATGCTGTTGATCC
66 CCGGTCGAACAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCTACATGCTGTAGATCC
* * *
25853455 TGCTGCCACACCCTCGGTCCGGTCCGA
131 CGCTGCCACACCCTCGGTCCGCTCAGA
* * * * * *
25853482 TCTTAGAC-TGGGAATGAACTCCCTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTTA
1 GCTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * * * *
25853546 GCCGGTCGAACAGGCATAATGCGCAAGCCGGGGATTGGCTCGATCCACCTCTGCATGTTGTAGGT
65 GCCGGTCGAACAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCC-CCCCTACATGCTGTAGAT
*
25853611 CCCGCTGCCACAACCCTCGGTCCGACT-AGG
129 CCCGCTGCCAC-ACCCTCGGTCCG-CTCAGA
* * *
25853641 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGAGCACTCAG
1 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
25853706 CCGGTC-AGAGAGGCAGAATGCGTAAGTCAGGGATCGACCCGATCCCCCCTA
66 CCGGTCGA-ACAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCTA
25853757 TGTGCTGCCG
Statistics
Matches: 224, Mismatches: 45, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
156 1 0.00
157 91 0.41
158 28 0.12
159 102 0.46
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGGTCGAACAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCCTACATGCTGTAGATCC
CGCTGCCACACCCTCGGTCCGCTCAGA
Found at i:25854190 original size:26 final size:26
Alignment explanation
Indices: 25854154--25854206 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25854144 CCGATCCGAT
*
25854154 CTTAGAATGGGAATAAACTCTGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
* * *
25854180 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
25854206 C
1 C
25854207 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATAAACTCCGTATG
Found at i:25855416 original size:26 final size:26
Alignment explanation
Indices: 25855378--25855427 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
25855368 GTCCGATCTA
*
25855378 AGACTAGGAATGAACTTCGTATGCTT
1 AGACTAGGAATGAACTCCGTATGCTT
*
25855404 AGACTAGGGATGAACTCCGTATGC
1 AGACTAGGAATGAACTCCGTATGC
25855428 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCGTATGCTT
Found at i:25855771 original size:26 final size:26
Alignment explanation
Indices: 25855730--25855785 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
25855720 CCAGTCTGAT
25855730 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25855756 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
25855782 CTTA
1 CTTA
25855786 AGTGAACACA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 27 0.93
27 2 0.07
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25856677 original size:491 final size:492
Alignment explanation
Indices: 25855754--25856738 Score: 1544
Period size: 491 Copynumber: 2.0 Consensus size: 492
25855744 GAACTCCGTA
* * *
25855754 TGCTTAGACTGAGGATGAACTCCGTATGCTTAAGTGAACACACGAAACGAGCGTGTGGGTGCTCA
1 TGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGTGCTCA
*
25855819 GCCGACCAGAGAGGCAGGATGCACAAGCCAAGGATCAAACGGGTGGTAGGTGGGTTCAAGCACAT
66 GCCGACCAGAGAGGCAGGATGCACAAGCCAAGGATCAAACGGGTGGTAGGTGGGTTCAACCACAT
* *
25855884 CTTCATATTTCTGCAGTACCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAG
131 CTTCATATTTCTGCAGTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAA
* *
25855949 CCTTCATGTGAAGTTTCGTGGCAAAACGACCCATTTTTTATTTTTCATGATTTTCAAAACTTTTA
196 CCTTCATGTGAAGTTTCGTGGCAAAACGACCCATTTTCTATTTTTCATAATTTTCAAAACTTTTA
**
25856014 CTGTTCGGGATTTTTTTAAATTTTTTTAGAAAGATTTTTGTCCTCAAATTTGGTAGAGGTGATCC
261 CTGTTCGGGATTTTTTTAAATTTTTTTAGAAAGATTTTTGTCAGCAAATTTGGTAGAGGTGATCC
* * *
25856079 TTGTATGTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGA
326 TCGTATGTTTTTTGGCATGCACAAAAAAAGTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGA
*
25856144 TCGTTTGAAAAAAGTGTCCCCATTTCAAACACTGTAATGGCTACTGGCAGCAAACCTATAAAATC
391 CCGTTTGAAAAAAGTGTCCCCATTTCAAACACTGTAATGGCTACTGGCAGCAAACCTATAAAATC
*
25856209 TCAAATGCTCTTTAAAGG-GGTGTTAGTTCTCAAGGTT
456 TCAAATGCTCTTT-AAGGAGGTGTGAGTTCTCAAGGTT
* * *
25856246 TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCA
1 TGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGTGCTCA
* * ** * **
25856311 GCTGACCAGAGAGG-ATGATGCGTAAGTCGGGGATCAAACGGGTGGTAGGTGGGTTCAACCACAT
66 GCCGACCAGAGAGGCAGGATGCACAAGCCAAGGATCAAACGGGTGGTAGGTGGGTTCAACCACAT
* *
25856375 CTTCATATTTCTGTC-GTGCCAATGCCATTTTTATGTCTTGTAAATTCATACAATGGTCCCCTAA
131 CTTCATATTTCTG-CAGTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAA
* * * ** *
25856439 ACCTTCATGTTAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCATAATTTTTGAAATTTTT
195 ACCTTCATGTGAAGTTTCGTGGCAAAACGACCCATTTTCTATTTTTCATAATTTTCAAAACTTTT
* *
25856504 GCTGTTCGTGATTTTTTTAAATTTTTTTAGAAAGATTTTTGTCAGCAAATTTGGTAGAGGTGATC
260 ACTGTTCGGGATTTTTTTAAATTTTTTTAGAAAGATTTTTGTCAGCAAATTTGGTAGAGGTGATC
* * **
25856569 CTCGTATTTTTTTTGGCATGCATAAAAAAAGTCAGCTAAAAACTTGAAGTGGAGAAGATTTTGTG
325 CTCGTATGTTTTTTGGCATGCACAAAAAAAGTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTG
* *
25856634 ACCGTTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGTAAACCTATAAAAT
390 ACCGTTTGAAAAAAGTGTCCCCATTTCAAACACTGTAATGGCTACTGGCAGCAAACCTATAAAAT
* *
25856699 CTCAAATGCTCTTTAAGGATGTGTGAGTTCTCGAGGTT
455 CTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTT
25856737 TG
1 TG
25856739 ATGAGGGATA
Statistics
Matches: 448, Mismatches: 43, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
490 4 0.01
491 371 0.83
492 73 0.16
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33
Consensus pattern (492 bp):
TGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGTGCTCA
GCCGACCAGAGAGGCAGGATGCACAAGCCAAGGATCAAACGGGTGGTAGGTGGGTTCAACCACAT
CTTCATATTTCTGCAGTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAA
CCTTCATGTGAAGTTTCGTGGCAAAACGACCCATTTTCTATTTTTCATAATTTTCAAAACTTTTA
CTGTTCGGGATTTTTTTAAATTTTTTTAGAAAGATTTTTGTCAGCAAATTTGGTAGAGGTGATCC
TCGTATGTTTTTTGGCATGCACAAAAAAAGTCAGCTAAAAACTCAAAGTGGAGAAGATTTTGTGA
CCGTTTGAAAAAAGTGTCCCCATTTCAAACACTGTAATGGCTACTGGCAGCAAACCTATAAAATC
TCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTT
Found at i:25856972 original size:26 final size:26
Alignment explanation
Indices: 25856943--25856995 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25856933 GGCTCAAAAT
* *
25856943 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
25856969 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
25856995 C
1 C
25856996 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:25857266 original size:159 final size:159
Alignment explanation
Indices: 25856978--25857276 Score: 372
Period size: 159 Copynumber: 1.9 Consensus size: 159
25856968 GCTTAGACAT
* **
25856978 GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGTGCTCGGCTGGTCAAAG
1 GGAATGAACTCCATATGCATAAGCCAACCCACAAAACAAGCGTGCAGGTGCTCGGCTGACCAAAG
* * *
25857043 AGGCAGAATGTGCAAACCGGGGATCAACCCAGTCCCCCTCGGTGTGCTGTCGATCCTGTGGCCAC
66 AGGCAGAATGCGCAAACCGGGGATCAACCCAGTCCCCCTCGGCGTGCTGTCGATCCCGTGGCCAC
*
25857108 AACCTTCGGTCCGCTCTGATCTTAGATTA
131 AACCCTCGGTCCGCTCTGATCTTAGATTA
* * *
25857137 GGAATGAACTCTATATGCATAAGTCAACCCACAAAACAAGCGTGC-GAGTGCT-GAG-TCGACCG
1 GGAATGAACTCCATATGCATAAGCCAACCCACAAAACAAGCGTGCAG-GTGCTCG-GCT-GACCA
* * ** * * * *
25857199 AAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCT-G
63 AAGAGGCAGAATGCGCAAACCGGGGATCAACCCAGTCCCCCTCGGCGTGCTGTCGATCCCG-TGG
25857263 CCACAACCCTCGGT
127 CCACAACCCTCGGT
25857277 TCGGCTGGGG
Statistics
Matches: 118, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
158 3 0.03
159 114 0.97
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCATATGCATAAGCCAACCCACAAAACAAGCGTGCAGGTGCTCGGCTGACCAAAG
AGGCAGAATGCGCAAACCGGGGATCAACCCAGTCCCCCTCGGCGTGCTGTCGATCCCGTGGCCAC
AACCCTCGGTCCGCTCTGATCTTAGATTA
Found at i:25857292 original size:159 final size:159
Alignment explanation
Indices: 25856978--25857327 Score: 363
Period size: 159 Copynumber: 2.2 Consensus size: 159
25856968 GCTTAGACAT
* **
25856978 GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACAAGCGTGCAGGTGCTCGGCTGGTCAAAG
1 GGAATGAACTCCATATGCATAAGCCAACCCACAAAACAAGCGTGCAGGTGCTCGGCTGACCAAAG
* * *
25857043 AGGCAGAATGTGCAAACCGGGGATCAACCCAGTCCCCCTCGGTGTGCTGTCGATCCTGTGGCCAC
66 AGGCAGAATGCGCAAACCGGGGATCAACCCAGTCCCCCTCGGCGTGCTGTCGATCCCGTGGCCAC
* *
25857108 AACCTTCGGTCCGCTCTGATCTTAGATTA
131 AACCCTCGGTCCGCTCGGATCTTAGATTA
* * *
25857137 GGAATGAACTCTATATGCATAAGTCAACCCACAAAACAAGCGTGC-GAGTGCT-GAG-TCGACCG
1 GGAATGAACTCCATATGCATAAGCCAACCCACAAAACAAGCGTGCAG-GTGCTCG-GCT-GACCA
* * ** * * * *
25857199 AAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCT-G
63 AAGAGGCAGAATGCGCAAACCGGGGATCAACCCAGTCCCCCTCGGCGTGCTGTCGATCCCG-TGG
* * * *
25857263 CCACAACCCTCGGTTCGGCTGGGGT-TTAGA-CA
127 CCACAACCCTCGG-TCCGCTCGGATCTTAGATTA
* *
25857295 TGGAATGAGCTTCC-TATGCCTAAGCCAACCCAC
1 -GGAATGAAC-TCCATATGCATAAGCCAACCCAC
25857328 GAAATGGGCG
Statistics
Matches: 157, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
158 4 0.03
159 143 0.91
160 10 0.06
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
GGAATGAACTCCATATGCATAAGCCAACCCACAAAACAAGCGTGCAGGTGCTCGGCTGACCAAAG
AGGCAGAATGCGCAAACCGGGGATCAACCCAGTCCCCCTCGGCGTGCTGTCGATCCCGTGGCCAC
AACCCTCGGTCCGCTCGGATCTTAGATTA
Found at i:25857486 original size:26 final size:26
Alignment explanation
Indices: 25857445--25857497 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25857435 CCGATCCGAT
*
25857445 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25857471 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25857497 C
1 C
25857498 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25857829 original size:26 final size:26
Alignment explanation
Indices: 25857800--25857852 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25857790 CCGGTCCGAT
*
25857800 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25857826 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25857852 C
1 C
25857853 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25857970 original size:184 final size:184
Alignment explanation
Indices: 25857641--25858010 Score: 476
Period size: 184 Copynumber: 2.0 Consensus size: 184
25857631 TCTGATTGGG
* * *
25857641 GCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTCCGGGTGTTCAA
1 GCTTAGATGTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTCCGGGCGCTCAA
* * ** *
25857706 CCGGTAAGAGAGGCAGAATACGCAGGTCGGGGATCGGCCCGATCCCTCTTAGGAGCTGCCGATCC
66 CCGGTAAGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGATCCCTCTTACGAGCTGCCGATCC
* * *
25857771 TGCTGCCGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAA-TTCCGTAT
131 TACTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTT-CGTAT
* * *
25857825 GCTTAGACTG-GGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGA-TGTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTCCGGGCGCTCA
* ** * * * *
25857889 GCCGGTTGGAGAGGTAGAATGCGCAAGCCGGGGATCAACCCGATCCC-CTTTACGTGCTGTCGAT
65 ACCGGTAAGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGATCCCTC-TTACGAGCTGCCGAT
* * *
25857953 CCTACTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTAT
129 CCTACTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTAT
25858009 GC
1 GC
25858011 ATAAGTCAAC
Statistics
Matches: 159, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
183 1 0.01
184 154 0.97
185 4 0.03
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (184 bp):
GCTTAGATGTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTCCGGGCGCTCAA
CCGGTAAGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGATCCCTCTTACGAGCTGCCGATCC
TACTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTTCGTAT
Found at i:25858198 original size:159 final size:158
Alignment explanation
Indices: 25857825--25858327 Score: 431
Period size: 158 Copynumber: 3.2 Consensus size: 158
25857815 AATTCCGTAT
* * * ** * * *
25857825 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACGAGTGTACGGGCACTCAG
* * * * * *
25857890 CCGGTTGGAGAGGTAGAATGCGCAAGCCGGGGATCAACCCGATCCCCTTTACGTGCTGTCGATCC
66 CCGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCTTTACGTGCTGTCGATCC
* * * * * *
25857955 TACTGCCGCAACCCTCGGTCTGATCTGA
131 CACTGCCACAACCCTCGATCCGACCGGA
* * * * ** *
25857983 TCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACAAAACGAGTGTACGGGCGGTGAG
1 GCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACGAGTGTACGGGCACTCAG
* ** *
25858048 CCGATCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGATCCCCTTCTGGGTGCTGTCGGTC
66 CCGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCTT-TACGTGCTGTCGATC
*
25858113 CCGCTGCCACAACCCTCGATCCGACCGGA
130 CCACTGCCACAACCCTCGATCCGACCGGA
* * * * *
25858142 GCTTAGACAT-GGAATGAGCTCCCTATTCCTAAGCCAACCCACAAAATGGGCT-TACGGGCACTC
1 GCTTAGAC-TGGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACGAG-TGTACGGGCACTC
* * * * * * * *
25858205 AGCCGGTCGGAGAGGTAGAATGCTCAA-TCCGAGGATCGACCCGATCCCCCTTGA-ATGCTATCG
64 AGCCGATCGAAGAGGCAGAATGCGCAAGT-CGGGGATCGACCCGAT-CCCCTTTACGTGCTGTCG
** * * * **
25858268 ATCCTGCTGCTATAACCCTCGGTCCGGTTC-GA
127 ATCCCACTGCCACAACCCTCGATCC-GACCGGA
* *
25858300 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCCTATGC
25858328 TTAGACTAGG
Statistics
Matches: 277, Mismatches: 61, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 148 0.53
159 120 0.43
160 8 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACAAAACGAGTGTACGGGCACTCAG
CCGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCTTTACGTGCTGTCGATCC
CACTGCCACAACCCTCGATCCGACCGGA
Found at i:25858330 original size:26 final size:26
Alignment explanation
Indices: 25858301--25858353 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25858291 CCGGTTCGAT
25858301 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
25858327 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
25858353 C
1 C
25858354 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:25858688 original size:26 final size:26
Alignment explanation
Indices: 25858652--25858704 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25858642 CCGGTTCGAT
25858652 CTTAGAATGGGAATGAACACTGTATG
1 CTTAGAATGGGAATGAACACTGTATG
* * *
25858678 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGAATGGGAATGAACACTGTATG
25858704 C
1 C
25858705 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACACTGTATG
Found at i:25859297 original size:356 final size:353
Alignment explanation
Indices: 25858103--25859465 Score: 1210
Period size: 355 Copynumber: 3.8 Consensus size: 353
25858093 CCTTCTGGGT
* * * * * *
25858103 GCTGTCGGTCCCGCTGCCACAACCCTC-GATCCGACCGGAGCTTAGACATGGAATG-AGCTCCCT
1 GCTGACGGTCCTGCTGCCACAACCCTCAG-TCCGACTGGGGCTTAGACGTGGAATGTA-CTCCAT
* * * * * ** * * *
25858166 ATTCCTAAGCCAACCCAC-AAAATGGGCTTACGG-GCACTCAGCCGGTCGGAGAGGTAGAATGCT
64 ATGCCTAAGCCAACCCACGAAAA-GAGCGTGCGGTG--CTCAGTCGACCGGAGAGGCAGAATACG
* * * * ** * *** *
25858229 CAATCCGAGGATCGACCCGATCCCCCTTGAATGCTATCGATCCTGCTGCTATAACCCTCGGTCCG
126 CAAGCCGGGGATCG-CCTGGTCCCCCTTGCGTGCTGTCGAT-CTGCTGCCGCAACCCTCGATCCG
* *
25858294 GTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAG
189 GTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
** * * * *
25858359 TCAACCAACGAAACGAGCGAGTGGGCACTCAGCCGGCCGGAGAGGCATAATGCACAAGCCGGGGA
254 TCAACCAACGAAACGAGCTTGCGGGCGCTCAGCAGGCCGAAGAGGCATAATGCACAAGCCGGGGA
* * **
25858424 TCAGCTCGATCCCCCTCTGCGTGC-TACCAATTTC
319 TCAGCCCGATCCCCCTCTGCGTGCTTACCGATCCC
25858458 GCT-ATCGGTCCTGCTGCCACAACCCTCAGTCCGA-TGGGGCTTAGACGTGGAATGTACTCCATA
1 GCTGA-CGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACTCCATA
* * ** * *** * *
25858521 TGCCTACGCCAACCCACGAAATGAGCGTGCGGCACTCAGCCGGTTGGAGAGGTAGAATGCGC-AG
65 TGCCTAAGCCAACCCACGAAAAGAGCGTGCGGTGCTCAGTCGACCGGAGAGGCAGAATACGCAAG
* * * *
25858585 TCAGGGATCGGCCTGG-CCCCCCTGCGTGCTGTTGATGCTGCTGCCGCAACCCTCGATCCGGTTC
130 CCGGGGATC-GCCTGGTCCCCCTTGCGTGCTGTCGAT-CTGCTGCCGCAACCCTCGATCCGGTTC
* * * *
25858649 GATCTTAGAATGGGAATGAACACTGTATGCTTAGATTGGGGATGAACTCTGTATGCCTAAGTCAA
193 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * * *
25858714 CCCACGAAATGAG-TGTGCGGGTGCTCAGCCGACCGGAAAGGCCGGTCAGAGAGGCATAATGCGC
258 CCAACGAAACGAGCT-TGCGGGCGCTCA---G--C----AGGCC-G--A-AGAGGCATAATGCAC
* * * * * *
25858778 AAGGCAGGGATCAGCCCGGTCCCCCTTTGTGTGATGT--CGATCCC
309 AAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCT-TACCGATCCC
* * ** * * * *
25858822 GCTGACGGCCCTACTGCCACAACCCTCAAACCGGCTGGGGCTTAGACATGGAATGCACTCCGTAT
1 GCTGACGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACTCCATAT
* ** * * *
25858887 GCCTAAGCCTACCCACGAATCGAGCGTGCAAGTGCTCAGTCGACCGAAGAGGCAGAATCCGCAAG
66 GCCTAAGCCAACCCACGAAAAGAGCGTGC-GGTGCTCAGTCGACCGGAGAGGCAGAATACGCAAG
* ** ** * *
25858952 CCGGGGATCGCCTTGGTCCCCCTTGTGTGCTACCGATCATGCTATCGCAACCCTCGATTCGGTCC
130 CCGGGGATCGCC-TGGTCCCCCTTGCGTGCTGTCGATC-TGCTGCCGCAACCCTCGATCCGGTTC
* * * *
25859017 AATCTTAGACTGAGAATGAACTCTGTATGCTTAGAATGGGGATGAACTCCATATGCCTAAGTCAA
193 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
** * * * * * *
25859082 CCAATAAAACGAGCTTCCAGGCGCTCAGCAGGTCGAATAGGCATAATGTACAAGTCGGGGATCAG
258 CCAACGAAACGAGCTTGCGGGCGCTCAGCAGGCCGAAGAGGCATAATGCACAAGCCGGGGATCAG
*
25859147 CCCGATCCCCCTCTACGTGCTTACCGATCCC
323 CCCGATCCCCCTCTGCGTGCTTACCGATCCC
* **
25859178 GCTGCCGGTCCTGCTGCCACAACCCTTGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCATAT
1 GCTGACGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACTCCATAT
* * * *
25859243 GCCTAAGCCAACCCACGAAAAAAGCGTCCGGGTGCTCAGTCGACCGGTGAGGCAGAATACGTAAG
66 GCCTAAGCCAACCCACGAAAAGAGCGTGC-GGTGCTCAGTCGACCGGAGAGGCAGAATACGCAAG
*** * * * **
25859308 CCGGGGATCGGCAC-GGTCCATTTTGGGTGCTGTCGATCCTACTGCCGTAACCCT-GATCTAGTT
130 CCGGGGATC-GC-CTGGTCCCCCTTGCGTGCTGTCGAT-CTGCTGCCGCAACCCTCGATCCGGTT
*
25859371 CGATCTTAGACTGGGAATGAACT-TCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTCAG-C
192 CGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
* * * * *
25859434 TAACCCACGAAAGGAGCGTGCAGGTGCTCAGC
256 -AACCAACGAAACGAGCTTGCGGGCGCTCAGC
25859466 CTACCAGACA
Statistics
Matches: 808, Mismatches: 163, Indels: 74
0.77 0.16 0.07
Matches are distributed among these distances:
351 116 0.14
352 10 0.01
353 27 0.03
354 49 0.06
355 157 0.19
356 155 0.19
357 3 0.00
358 2 0.00
359 4 0.00
360 4 0.00
361 1 0.00
363 1 0.00
364 72 0.09
365 54 0.07
366 26 0.03
367 13 0.02
368 113 0.14
369 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (353 bp):
GCTGACGGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACTCCATAT
GCCTAAGCCAACCCACGAAAAGAGCGTGCGGTGCTCAGTCGACCGGAGAGGCAGAATACGCAAGC
CGGGGATCGCCTGGTCCCCCTTGCGTGCTGTCGATCTGCTGCCGCAACCCTCGATCCGGTTCGAT
CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCA
ACGAAACGAGCTTGCGGGCGCTCAGCAGGCCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCC
GATCCCCCTCTGCGTGCTTACCGATCCC
Found at i:25859404 original size:26 final size:26
Alignment explanation
Indices: 25859375--25859427 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25859365 CTAGTTCGAT
*
25859375 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25859401 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25859427 C
1 C
25859428 CTCAGCTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25859915 original size:26 final size:26
Alignment explanation
Indices: 25859874--25859926 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25859864 CCGGTCCGAT
25859874 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
25859900 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
25859926 C
1 C
25859927 CTAATTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:25860276 original size:26 final size:26
Alignment explanation
Indices: 25860240--25860292 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25860230 TCGGTTCAAT
25860240 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* * *
25860266 CTTAGACTGGGGATGGATTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
25860292 C
1 C
25860293 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:25860358 original size:366 final size:364
Alignment explanation
Indices: 25859686--25860708 Score: 1124
Period size: 366 Copynumber: 2.8 Consensus size: 364
25859676 GTGCTGCTGG
* * * * * * *
25859686 TCCTGCTGCCACAACCCTCGGTCCGACTGGTGCTTAAACATGGAATGAGCTCCCTATTCCTACGC
1 TCCTGCTGCCACAACCCTCGATCTGACAGG-GCTTAAACGTGGAATGA-CTCCGTATGCCTAAGC
* * * * * * * *
25859751 TAACCCATGAAACGGGCGTACGGGGGCTCAGCTGGTCGGAG-GGCAGAATGCGCAATCCAGGGAT
64 AAACCCATGAAACGAGTGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGAT
* *
25859815 CGGCCCGATCCCCCCTGCATGCTATCGATCCTGCTGCCACAACCCTC-ATCCGGTCCGATCTTAG
129 CGGCCTG-GCCCCCCTGCATGCTATCGATCCTGCTGCCACAACCCTCGATCCGGTCCGATCTTAG
* * * *
25859879 ACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAATTCAACCAATGAA
193 ACTGGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAA-TCAACCCACGAA
* * *
25859944 ATGACCGTGCGGGCGCTCAGTCGACCGGAGAGGCTGACTGAAGAGGCATAATGCACAAGTCGGGG
257 ATGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCCGACTGAAGAGGCATAATGCACAAGTCGAGG
* * ** *
25860009 CTCAGCTCGGTCCCCCTCTACATGCTGCCAAT-TTCACTATCGA
322 ATCAGCCCGGTCCCCCTCTACATAATGCCAATCCT-ACTATCGA
* * * *
25860052 TCCTGCTACCATAACCCTCGATCTGACAGGGCTTACACGTGGAATGTACTCCGTATGCCTAAGCC
1 TCCTGCTGCCACAACCCTCGATCTGACAGGGCTTAAACGTGGAATG-ACTCCGTATGCCTAAGCA
* * * *
25860117 AACCCATGAAACGAGTGTACGGGCGCTCAACCGATCGGAGAGGCAGAATGTGCAAGCTGGGGATT
65 AACCCATGAAACGAGTGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATC
* * * * * * *
25860182 GGCCTGGCCCCCCTGCGTGCTGTCGATCCTGCTGCCTCAACCCTCGTTTCGGTTCAATCTTAGAC
130 GGCCTGGCCCCCCTGCATGCTATCGATCCTGCTGCCACAACCCTCGATCCGGTCCGATCTTAGAC
* * * * *
25860247 TGGGAATGAACTCTGTATGCTTAGACTGGGGATGGATTCTGTATGCCTAAGTCAACCCACGAAAC
195 TGGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAA-TCAACCCACGAAAT
* * *
25860312 GAGCGTGCGGGTGCTCAATCGACCGGAGAGGCCGA-TCGAAGAGGCATAATGCGCAAGTCGAGGA
259 GAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCCGACT-GAAGAGGCATAATGCACAAGTCGAGGA
* * * * * * * * *
25860376 TCAGCCCGGTCCCTCTTTGCGTAATGTCGATCCTGCTGTCGG
323 TCAGCCCGGTCCCCCTCTACATAATGCCAATCCTACTATCGA
* * *** * *
25860418 TCCTACTGCCACAACCCTCGATTTGGTTGGGGCTTAGATGTGGAATGCACT-CGTATGCCTAAG-
1 TCCTGCTGCCACAACCCTCGATCT-GACAGGGCTTAAACGTGGAATG-ACTCCGTATGCCTAAGC
* *** * * *
25860481 AATACCCACGAAACGAGTGTGTAGGTGCTTAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGA
64 AA-ACCCATGAAACGAGTGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGA
* * ** *
25860546 TCGCCCTGGTCCCCCCTGCATGCTACCGATCCTGCTATCGCAA-CCTCCGATCCGGTCCGATCTT
128 TCGGCCTGG-CCCCCCTGCATGCTATCGATCCTGCTGCCACAACCCT-CGATCCGGTCCGATCTT
* *
25860610 AGACTGGGAATGAACTCTCTATGCTTAGAATGGGGATGAACTCCGTATGCCTATATCAACCCACG
191 AGACTGGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCCGTATGCCTA-ATCAACCCACG
*
25860675 AAATGAGCGTGCGGGCGCTCAGTCGACCAGAGAG
255 AAATGAGCGTGCGGGCGCTCAGTCGACCGGAGAG
25860709 CCAGGATGCG
Statistics
Matches: 544, Mismatches: 103, Indels: 19
0.82 0.15 0.03
Matches are distributed among these distances:
365 98 0.18
366 296 0.54
367 149 0.27
368 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (364 bp):
TCCTGCTGCCACAACCCTCGATCTGACAGGGCTTAAACGTGGAATGACTCCGTATGCCTAAGCAA
ACCCATGAAACGAGTGTACGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
GCCTGGCCCCCCTGCATGCTATCGATCCTGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACT
GGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCCGTATGCCTAATCAACCCACGAAATGA
GCGTGCGGGCGCTCAGTCGACCGGAGAGGCCGACTGAAGAGGCATAATGCACAAGTCGAGGATCA
GCCCGGTCCCCCTCTACATAATGCCAATCCTACTATCGA
Found at i:25862078 original size:26 final size:26
Alignment explanation
Indices: 25862040--25862092 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25862030 GGCTGAAAAT
**
25862040 CTTAGACTGGGAATGTGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25862066 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25862092 C
1 C
25862093 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25862348 original size:184 final size:185
Alignment explanation
Indices: 25862038--25862387 Score: 440
Period size: 184 Copynumber: 1.9 Consensus size: 185
25862028 ATGGCTGAAA
**
25862038 ATCTTAGACTGGGAATGTGCTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * * *
25862103 CCACGGAACGAGCGTGCAGGCGCTCAGCCGGCCGGAGAGGCAAAATGCACAAGCTGGGGATCGGC
66 CCACGAAACGAGCATACAGGCGCTCAACAGGCCGAAAAGGCAAAATGCACAAGCTGGGGATCAGC
* * *
25862168 TCGGTCCCCC-CTGCATGCTGTCGATCCTACTGTCGCAACATTCGGTCCAGTCCG
131 CCGGTCCCCCTCTACATGCTGCCGATCCTACTGTCGCAACATTCGGTCCAGTCCG
* *
25862222 ATCTTAGACTGGGAATGAACT-CGATATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCA
1 ATCTTAGACTGGGAATGAACTCCG-TATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCA
* * **
25862285 ACCCACGAAACGAGCATAC-GAGCGCTCAACAGGCTGAAAAGGCATAATGTGCAAG-TCGGGGAT
64 ACCCACGAAACGAGCATACAG-GCGCTCAACAGGCCGAAAAGGCAAAATGCACAAGCT-GGGGAT
* *
25862348 CAGCCCGGTCCCCCTCTACGTGCTGCCGATCCTGCTGTCG
127 CAGCCCGGTCCCCCTCTACATGCTGCCGATCCTACTGTCG
25862388 ATCCTGCTAC
Statistics
Matches: 140, Mismatches: 21, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
183 5 0.04
184 114 0.81
185 21 0.15
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (185 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCATACAGGCGCTCAACAGGCCGAAAAGGCAAAATGCACAAGCTGGGGATCAGC
CCGGTCCCCCTCTACATGCTGCCGATCCTACTGTCGCAACATTCGGTCCAGTCCG
Found at i:25862608 original size:26 final size:26
Alignment explanation
Indices: 25862579--25862631 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25862569 CCGGTCCGAT
25862579 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
25862605 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25862631 C
1 C
25862632 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25862717 original size:355 final size:354
Alignment explanation
Indices: 25862066--25862735 Score: 895
Period size: 355 Copynumber: 1.9 Consensus size: 354
25862056 GCTCCGTATG
* * *
25862066 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTCCAGGCGCTCAGC
* * *
25862131 CGGCCGGAGAGGCAAAATGCACAAGCTGGGGATCGGCTCGGTCCCCCCTGCATGCTGTCGATCCT
66 CGACCGGAGAGGCAAAATG-ACAAGCTGGGGATCAGCTCGGTCCCCCCTGCATGCTGCCGATCCT
* * *
25862196 ACTGTCGCAACATTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCGATATGCTTAGACTGGG
130 ACTGTCGCAACACTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCGATATGCTTAGACTGGG
*
25862261 GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGAGCGCTCAACAGGCTGAAAAG
195 GATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCAACAGGCTGAAAAG
* * * * **
25862326 GCATAATGTGCAAGTCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGCCGATCCTGCTGTCGATC
260 GCAGAATGCGCAAGCCGGGGATCAACCCAATCCCCCTCTACGTGCTGCCGATCCTGCTGTCGATC
25862391 CTGCTACCACAACCCTCGGTCTGACTGGCC
325 CTGCTACCACAACCCTCGGTCTGACTGGCC
* * * *
25862421 CTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTCCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTCCAGGCGCTCAGC
* * *
25862486 CGACCGGAGAGGCAGAATATG-C-AGGTCGGGGATCAGC-CGGGTCCCTCCTGGGA-GCTGCCGA
66 CGACCGGAGAGGCA-AA-ATGACAAGCT-GGGGATCAGCTC-GGTCCCCCCT-GCATGCTGCCGA
* *
25862547 TCCTGA-TG-CAGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCG-TATGCTTA
126 TCCT-ACTGTC-GCAACACTCGATCCAGTCCGATCTTAGACTAGGAATGAACT-CGATATGCTTA
* * * * *
25862609 GACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGC
188 GACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCAACAGGC
* * * * *
25862674 TGGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCAATCCCCCTTTGCGTGCTGTCGATCCT
253 TGAAAAGGCAGAATGCGCAAGCCGGGGATCAACCCAATCCCCCTCTACGTGCTGCCGATCCT
25862736 ACTGCCGCAA
Statistics
Matches: 272, Mismatches: 35, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
354 5 0.02
355 257 0.94
356 7 0.03
357 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (354 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTCCAGGCGCTCAGC
CGACCGGAGAGGCAAAATGACAAGCTGGGGATCAGCTCGGTCCCCCCTGCATGCTGCCGATCCTA
CTGTCGCAACACTCGATCCAGTCCGATCTTAGACTAGGAATGAACTCGATATGCTTAGACTGGGG
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCAACAGGCTGAAAAGG
CAGAATGCGCAAGCCGGGGATCAACCCAATCCCCCTCTACGTGCTGCCGATCCTGCTGTCGATCC
TGCTACCACAACCCTCGGTCTGACTGGCC
Found at i:25863104 original size:26 final size:26
Alignment explanation
Indices: 25863075--25863127 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25863065 CCGGTTCGAT
*
25863075 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25863101 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25863127 C
1 C
25863128 CTAAGTCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25864144 original size:26 final size:26
Alignment explanation
Indices: 25864115--25864167 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25864105 CCGATACGAT
25864115 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25864141 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25864167 C
1 C
25864168 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25865362 original size:26 final size:26
Alignment explanation
Indices: 25865326--25865378 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25865316 CCGATCCGAT
25865326 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25865352 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25865378 C
1 C
25865379 GTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25865730 original size:26 final size:26
Alignment explanation
Indices: 25865694--25865744 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
25865684 CCGGTTCGAT
* *
25865694 CTTAGACTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATAAACTCCGTATA
*
25865720 CTTAGACTGGGGATAAACTCCGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
25865745 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATA
Found at i:25865850 original size:184 final size:184
Alignment explanation
Indices: 25865552--25865902 Score: 472
Period size: 184 Copynumber: 1.9 Consensus size: 184
25865542 CATGGAATGT
* * * *
25865552 ACTCTGTATGACTAAGCCAACCCACGAAACGAACGTGCGGGCCCTCAATCGACCGAAGAGTTAGA
1 ACTCCGTATGACTAAGCCAACCCACGAAACGAACGTGCGGGCCCTCAACCAACCGAAGAGGTAGA
* * * *
25865617 ATGCGCAAGTCAGGGATCGGCTCGGTCCCCCCTGCGTGTTGTCGATCCTACTACCGCAACCCTCG
66 ATGCGAAAGTCAGGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTACTACCACAACCCTCG
*
25865682 ATCCGGT-TCGATCTTAGACTGGGAATGAACTCTGTATACTTAGACTGGGGATAA
131 ATCCGGTCT-GATCTTAGACTGGGAATGAACCCTGTATACTTAGACTGGGGATAA
* * * * * *
25865736 ACTCCGTATGCCTAAGTCAACCCATGAAAC-AAGCGTGCGGGCGCTCAGCCAACCGGAGAGGTAG
1 ACTCCGTATGACTAAGCCAACCCACGAAACGAA-CGTGCGGGCCCTCAACCAACCGAAGAGGTAG
** * *
25865800 AATGCGAAAGTTGGGGATCGACTCGGTCCCCCCTGCGTGCTGTTGATCCTACTACCACATCCCTC
65 AATGCGAAAGTCAGGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTACTACCACAACCCTC
* * *
25865865 GGTCTGGTCTGATCTTAGACTGGGAATGAGCCCTGTAT
130 GATCCGGTCTGATCTTAGACTGGGAATGAACCCTGTAT
25865903 GCATAAGTCA
Statistics
Matches: 143, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
183 2 0.01
184 140 0.98
185 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
ACTCCGTATGACTAAGCCAACCCACGAAACGAACGTGCGGGCCCTCAACCAACCGAAGAGGTAGA
ATGCGAAAGTCAGGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTACTACCACAACCCTCG
ATCCGGTCTGATCTTAGACTGGGAATGAACCCTGTATACTTAGACTGGGGATAA
Found at i:25866231 original size:26 final size:26
Alignment explanation
Indices: 25866195--25866247 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25866185 CCAATCCGAT
* *
25866195 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
25866221 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
25866247 C
1 C
25866248 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:25866553 original size:355 final size:352
Alignment explanation
Indices: 25865878--25867035 Score: 1108
Period size: 368 Copynumber: 3.3 Consensus size: 352
25865868 CTGGTCTGAT
* * * * * * * *
25865878 CTTAGACTGGGAATGAGCCCTGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGTACTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * ** * *
25865943 CGATCGAAAAGGCATAATGTGCAAGTCGGGGATC-GACCCGGTCCTCCTCTGCGTGC--T-G-T-
66 CGACCGGAGAGGCATAATGCGCAAGCCAAGGATCAG-CCCGATCCCCCTCTGCGTGCTATCGATC
* * *
25866002 -CG-----GTCCTGCTGCCAGAACCCTCGGTTCGACTGGGGCTTAGACATGGAATG-AGCTCCCT
130 CCGCTACCGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTA-CTCCAT
* * * * *
25866060 ATGCCTAAGCCAACCCATAAAACGGACATGCGGGCACTCA-ACGGGCCGGAGAGGTAGAATGCGC
194 ATGCCTAAGCCAACCCATAAAACGAACGTGCGGGCACTCAGTC-CGCTGGAGA-GTAGAATGCGC
** * ** * * * * **
25866124 AAGCCGGGGATCGGCTTGATCCCCCCTGCATGCTACCGGTCCTGTTACTGCAACCCTCGGTCCAA
257 AAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGG
*
25866189 TCCGATCTTAGACTGGGAATGAACTTCGTATG
322 T-TGATCTTAGACTGGGAATGAACTTCGTATG
* *
25866221 CTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* *
25866286 CGACCGGAGAGGCATAATGCGCAAGCCAAGGTTTAGCCCGATCCCCCTCTGCGTGCTATCGATCC
66 CGACCGGAGAGGCATAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTATCGATCC
* *
25866351 CGCTACCAGTCCTGCTGCCACAGCCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCTATA
131 CGCTACC-GTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCATA
* * * *
25866416 TGCCTAAGCCAACCCACAAAACAAACGTGCGAGC-CTTCAGTCCGCTGGAGAGTAAGAATGTGCA
195 TGCCTAAGCCAACCCATAAAACGAACGTGCGGGCAC-TCAGTCCGCTGGAGAGT-AGAATGCGCA
* * * * *
25866480 AGCCGGGGATCGGCCCGTTCCCTCATGCGTGCTGTCGATCCTGCTACCGCAACCTTCCATCCGGT
258 AGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGT
25866545 TAGATCTTAGACTGGGAATGAAC-TCTGTATG
323 T-GATCTTAGACTGGGAATGAACTTC-GTATG
* * * ** * *
25866576 CATAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCATAAAACGAGTGTACGGGCACTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCA--
* * * * *
25866641 CGACCAGAGAGGCTGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGGTCCCCCTTTGT
64 -G-CC---GA------CCGGAGAGGCATAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTGC
* ** * ** *
25866706 GTGCTGTCGATCCCGCTGTCGATCCTGCTACCACAACATTCGGTCTGACTGGGGCTTAGACATGG
118 GTGCTATCGATCCCGCTACCG-TCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGG
* * * * * * *
25866771 AATGTACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGTTCGGGCGCTCAGT-CGACTGGAGA
182 AATGTACTCCATATGCCTAAGCCAACCCATAAAACGAACGTGCGGGCACTCAGTCCG-CTGGAGA
* * * * * **
25866835 GGCAGAATGCGCAAGCCAGGGATCGGTCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAA
246 -GTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAA
* *
25866900 CCCTCGATCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATG
310 CCCTCGATCCGGT-TGATCTTAGACTGGGAATGAACTTCGTATG
* **
25866944 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGTTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * **
25867009 CAACCAGAGAGGCAGGATGCGCAAGCC
66 CGACCGGAGAGGCATAATGCGCAAGCC
25867036 GGGGATCGAA
Statistics
Matches: 663, Mismatches: 114, Indels: 64
0.79 0.14 0.08
Matches are distributed among these distances:
343 98 0.15
344 1 0.00
345 1 0.00
346 1 0.00
347 1 0.00
349 2 0.00
354 5 0.01
355 248 0.37
356 2 0.00
358 1 0.00
359 2 0.00
361 1 0.00
362 2 0.00
364 2 0.00
365 1 0.00
367 3 0.00
368 288 0.43
369 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (352 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGACCGGAGAGGCATAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTATCGATCC
CGCTACCGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCATAT
GCCTAAGCCAACCCATAAAACGAACGTGCGGGCACTCAGTCCGCTGGAGAGTAGAATGCGCAAGC
CGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTTGA
TCTTAGACTGGGAATGAACTTCGTATG
Found at i:25866588 original size:26 final size:26
Alignment explanation
Indices: 25866552--25866602 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
25866542 GGTTAGATCT
*
25866552 TAGACTGGGAATGAACTCTGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
25866578 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
25866603 TTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:25866641 original size:856 final size:863
Alignment explanation
Indices: 25864944--25866652 Score: 2299
Period size: 856 Copynumber: 2.0 Consensus size: 863
25864934 GCCCAAGTAA
* * * * *
25864944 GGGATCGACTCGTTCCCCCCCTTCGTGCGGTTGATCCTGCTGCCACATCCCTTGGTCCGATCTGA
1 GGGATCGACTCGGTCCCCCCCTGCGTGCGGTTGATCCTACTACCACATCCCTCGGTCCGATCTGA
* * *
25865009 TCTTAGACTGGGAATGAGCTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCAGGCGCTGAG
66 TCTTAGACTGGGAATGAGCTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACAGGCACTGAG
25865074 CCGACCGAAAAGGCATAATGTGCAAGCCGGGGATCCGCCCGGTCCCCCTCTGCCTACTGCCAGTC
131 CCGACCGAAAAGGCATAATGTGCAAGCCGGGGATCCGCCCGGTCCCCCTCTGCCTACTGCCAGTC
* * *
25865139 CCGCTGCCACAACCCTCTGTTCGGCTGGGGCTTAGAGATGGAATGAGCTCCCTAAGCCTAAGCCA
196 CCGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAGCTCCCTAAGCCTAAGCCA
* * * * * *
25865204 ACCCACGAAACAGGCGTGCGGGTACTCAGCCGACTGGAGAGACAAAATGCGCAAGCCGGGGTTGG
261 ACCCACAAAACAGGCATGCGGGCACTCAACCGACCGGAGAGACAAAATGCGCAAGCCGGGGTCGG
* * *
25865269 CCTAATCCCCCCTGCGTGCTACCGGTCCTGCTACCGTAACCCTCAGTCCGATCCGATCTTAGACT
326 CCTAATCCCCCCTGCATGCTACCGGTCCTGCTACCGCAACCCTCAGTCCAATCCGATCTTAGACT
* * * * *
25865334 GGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCGTAGGTCAACCCATGAAACG
391 GGGAATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACA
** *
25865399 AGCGTGCGAGCGCTCAACTGACCGGAGAGACCGGTCGGAGAGGCATAATGCACAAACCGAGGATC
456 AGCGTGCGAGCGC-CAACT-A-C---GAGACCGACCGGAGAGGCATAATGCACAAACCAAGGATC
* * * * * *
25865464 GGCCTGATCCCCCTCTGCGTGCTGCCGATCCCGCTGCCGGTCCTACTGCCATAACCCTCGGTCCG
515 AGCCCGATCCCCCTCTGCGTGCTACCGATCCCGCTACCAGTCCTACTGCCACAACCCTCGGTCCG
* * * *
25865529 ACTAGGGCTTAGACATGGAATGTACTCTGTATGACTAAGCCAACCCACGAAACGAACGTGCGGGC
580 ACTAGGGCTTAGACATGGAATGTACTCTATATGACTAAGCCAACCCACAAAACAAACGTGCGAGC
* * * * *
25865594 CCTCAATCGACCGAAGAGTTAGAATGCGCAAGTCAGGGATCGGCTCGGTCCCCCCTGCGTGTTGT
645 CCTCAATCGACCGAAGAGTAAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCATGCGTGCTGT
* * *
25865659 CGATCCTACTACCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCTGTATACTTA
710 CGATCCTACTACCGCAACCCTCCATCCGGTTAGATCTTAGACTGGGAATGAACTCTGTATACATA
* * * *
25865724 GACTGGGGATAAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCAAC
775 GACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATAAAACAAGCGTACGGGCACTCAGCCAAC
*
25865789 CGGAGAGGTAGAATGCGAAAGTTG
840 CAGAGAGGTAGAATGCGAAAGTTG
* * *
25865813 GGGATCGACTCGGT-CCCCCCTGCGTGCTGTTGATCCTACTACCACATCCCTCGGTCTGGTCTGA
1 GGGATCGACTCGGTCCCCCCCTGCGTGCGGTTGATCCTACTACCACATCCCTCGGTCCGATCTGA
* *
25865877 TCTTAGACTGGGAATGAGC-CCTGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGTACTGA
66 TCTTAGACTGGGAATGAGCTCC-GTATGCATAAGTCAACCCACGAAACGAGCGTACAGGCACTGA
* * * * * * *
25865941 GCCGATCGAAAAGGCATAATGTGCAAGTCGGGGAT-CGACCCGGTCCTCCTCTGCGTGCTGTCGG
130 GCCGACCGAAAAGGCATAATGTGCAAGCCGGGGATCCG-CCCGGTCCCCCTCTGCCTACTGCCAG
* * *
25866005 TCCTGCTGCCAGAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGC
194 TCCCGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAGCTCCCTAAGCCTAAGC
* * * ** *
25866070 CAACCCATAAAAC-GGACATGCGGGCACTCAACGGGCCGGAGAGGTAGAATGCGCAAGCCGGGGA
259 CAACCCACAAAACAGG-CATGCGGGCACTCAACCGACCGGAGAGACAAAATGCGCAAGCCGGGG-
* * * * *
25866134 TCGGCTTGATCCCCCCTGCATGCTACCGGTCCTGTTACTGCAACCCTCGGTCCAATCCGATCTTA
322 TCGGCCTAATCCCCCCTGCATGCTACCGGTCCTGCTACCGCAACCCTCAGTCCAATCCGATCTTA
* *
25866199 GACTGGGAATGAACTTCGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGA
387 GACTGGGAATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGA
* * * *
25866264 AACAAGCGTGCG-G-G-C-ACT-C-AG-CCGACCGGAGAGGCATAATGCGCAAGCCAAGGTTTAG
452 AACAAGCGTGCGAGCGCCAACTACGAGACCGACCGGAGAGGCATAATGCACAAACCAAGGATCAG
* * *
25866322 CCCGATCCCCCTCTGCGTGCTATCGATCCCGCTACCAGTCCTGCTGCCACAGCCCTCGGTCCGAC
517 CCCGATCCCCCTCTGCGTGCTACCGATCCCGCTACCAGTCCTACTGCCACAACCCTCGGTCCGAC
* * *
25866387 TGGGGCTTAGACATGGAATGTACTCTATATGCCTAAGCCAACCCACAAAACAAACGTGCGAGCCT
582 TAGGGCTTAGACATGGAATGTACTCTATATGACTAAGCCAACCCACAAAACAAACGTGCGAGCCC
* * * * * * *
25866452 TCAGTCCG-CTGGAGAGTAAGAATGTGCAAGCCGGGGATCGGCCCGTTCCCTCATGCGTGCTGTC
647 TCAAT-CGACCGAAGAGTAAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCATGCGTGCTGTC
* * *
25866516 GATCCTGCTACCGCAACCTTCCATCCGGTTAGATCTTAGACTGGGAATGAACTCTGTATGCATAG
711 GATCCTACTACCGCAACCCTCCATCCGGTTAGATCTTAGACTGGGAATGAACTCTGTATACATAG
* * * * *
25866581 ACTGGGAATGAACTCCGTATGCTTAAGTCAACCCATAAAACGAGTGTACGGGCACTCAGCCGACC
776 ACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATAAAACAAGCGTACGGGCACTCAGCCAACC
25866646 AGAGAGG
841 AGAGAGG
25866653 CTGGCCGGAG
Statistics
Matches: 731, Mismatches: 104, Indels: 23
0.85 0.12 0.03
Matches are distributed among these distances:
856 314 0.43
857 4 0.01
861 1 0.00
864 3 0.00
865 1 0.00
867 7 0.01
868 262 0.36
869 139 0.19
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (863 bp):
GGGATCGACTCGGTCCCCCCCTGCGTGCGGTTGATCCTACTACCACATCCCTCGGTCCGATCTGA
TCTTAGACTGGGAATGAGCTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACAGGCACTGAG
CCGACCGAAAAGGCATAATGTGCAAGCCGGGGATCCGCCCGGTCCCCCTCTGCCTACTGCCAGTC
CCGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAGCTCCCTAAGCCTAAGCCA
ACCCACAAAACAGGCATGCGGGCACTCAACCGACCGGAGAGACAAAATGCGCAAGCCGGGGTCGG
CCTAATCCCCCCTGCATGCTACCGGTCCTGCTACCGCAACCCTCAGTCCAATCCGATCTTAGACT
GGGAATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACA
AGCGTGCGAGCGCCAACTACGAGACCGACCGGAGAGGCATAATGCACAAACCAAGGATCAGCCCG
ATCCCCCTCTGCGTGCTACCGATCCCGCTACCAGTCCTACTGCCACAACCCTCGGTCCGACTAGG
GCTTAGACATGGAATGTACTCTATATGACTAAGCCAACCCACAAAACAAACGTGCGAGCCCTCAA
TCGACCGAAGAGTAAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCATGCGTGCTGTCGATCC
TACTACCGCAACCCTCCATCCGGTTAGATCTTAGACTGGGAATGAACTCTGTATACATAGACTGG
GAATAAACTCCGTATGCCTAAGTCAACCCATAAAACAAGCGTACGGGCACTCAGCCAACCAGAGA
GGTAGAATGCGAAAGTTG
Found at i:25866834 original size:368 final size:361
Alignment explanation
Indices: 25865997--25867021 Score: 1110
Period size: 368 Copynumber: 2.8 Consensus size: 361
25865987 TCCTCTGCGT
* * *
25865997 GCTGTCGGTCCTGCTGCCAGAACCCTCGGT-TCGACTGGGGCTTAGACATGGAATG-AGCTCCCT
1 GCTGTCGATCCTGCTGCCACAACCCTCGGTCT-GACTGGGGCTTAGACATGGAATGTA-CTCCAT
* * *
25866060 ATGCCTAAGCCAACCCATAAAACG-GACATGCGGGCACTCAACG-GGCCGGAGAGGTAGAATGCG
64 ATGCCTAAGCCAACCCATAAAACGAG-CGTGCGGGC-CTC-A-GTCGCTGGAGA-GTAGAATGCG
** * ** * * * * *
25866123 CAAGCCGGGGATCGGCTTGATCCCCCCTGCATGCTACCGGTCCTGTTACTGCAACCCTCGGTCCA
124 CAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCG
* * *
25866188 ATCCGATCTTAGACTGGGAATGAACT-TCGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAA
189 GT-TGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
*
25866252 GTCAACCCACGAAACAAGCGTGCGGGCACTCA---G-CC---GA---CCGGAGAGGCATAATGCG
252 GTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGAGGCCCGGAGAGGCATAATGCG
* *
25866307 CAAGCCAAGGTTTAGCCCGATCCCCCTCTGCGTGCTATCGATCCC
317 CAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTATCGATCCC
* * * * *
25866352 GCT-ACCAGTCCTGCTGCCACAGCCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCTATA
1 GCTGTCGA-TCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGTACTCCATA
* * * * *
25866416 TGCCTAAGCCAACCCACAAAACAAACGTGCGAGCCTTCAGTCCGCTGGAGAGTAAGAATGTGCAA
65 TGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCC-TCAGT-CGCTGGAGAGT-AGAATGCGCAA
* * * * *
25866481 GCCGGGGATCGGCCCGTTCCCTCATGCGTGCTGTCGATCCTGCTACCGCAACCTTCCATCCGGTT
127 GCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTT
* * *
25866546 AGATCTTAGACTGGGAATGAACTCTGTATGCATAGACTGGGAATGAACTCCGTATGCTTAAGTCA
192 -GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
** * *
25866611 ACCCATAAAACGAGTGTACGGGCACTCAGCCGACCAGAGAGGCTGGCCGGAGAGGCATAATGCGC
256 ACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGAGGC---CCGGAGAGGCATAATGCGC
* * * * * *
25866676 AAGCCGAGGATCAGCTCGGTCCCCCTTTGTGTGCTGTCGATCCC
318 AAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTATCGATCCC
* ** *
25866720 GCTGTCGATCCTGCTACCACAACATTCGGTCTGACTGGGGCTTAGACATGGAATGTACTCCGTAT
1 GCTGTCGATCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGTACTCCATAT
* * * * *
25866785 GCCTAAGCCAACCGATGAAATGAGCGTTCGGGCGCTCAGTCGACTGGAGAGGCAGAATGCGCAAG
66 GCCTAAGCCAACCCATAAAACGAGCGTGCGGGC-CTCAGTCG-CTGGAGA-GTAGAATGCGCAAG
* * * * **
25866850 CCAGGGATCGGTCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATCCGGTCT
128 CCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGT-T
* *
25866915 GATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
192 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* ** *
25866980 CCCACGAAACGAGCGTGCGGACGTTCAGCCAACCAGAGAGGC
257 CCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGAGGC
25867022 AGGATGCGCA
Statistics
Matches: 550, Mismatches: 92, Indels: 43
0.80 0.13 0.06
Matches are distributed among these distances:
353 1 0.00
354 5 0.01
355 227 0.41
356 2 0.00
358 1 0.00
359 2 0.00
362 2 0.00
367 2 0.00
368 303 0.55
369 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (361 bp):
GCTGTCGATCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGTACTCCATAT
GCCTAAGCCAACCCATAAAACGAGCGTGCGGGCCTCAGTCGCTGGAGAGTAGAATGCGCAAGCCG
GGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTTGATC
TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGAGGCCCGGAGAGGCATAATGCGCAAGCCAAG
GATCAGCCCGATCCCCCTCTGCGTGCTATCGATCCC
Found at i:25866947 original size:26 final size:26
Alignment explanation
Indices: 25866918--25866970 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25866908 CCGGTCTGAT
25866918 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
25866944 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
25866970 C
1 C
25866971 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:25867864 original size:26 final size:26
Alignment explanation
Indices: 25867823--25867875 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25867813 CTGGTCTAAT
*
25867823 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25867849 CTTAGACTGAGG-ATGAACTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
25867875 C
1 C
25867876 GCAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25868207 original size:26 final size:26
Alignment explanation
Indices: 25868178--25868230 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25868168 TCGGTCCAAT
25868178 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25868204 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25868230 C
1 C
25868231 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25868301 original size:355 final size:354
Alignment explanation
Indices: 25867642--25868302 Score: 900
Period size: 355 Copynumber: 1.9 Consensus size: 354
25867632 GGTCTTGCTA
* *
25867642 CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGATTGAGCTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCAC
* * * * *
25867707 AAAACGGGCGTGCGGGCGCTCAACTGGTCGAAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCGG
66 AAAACGAGCGTGCGGGCGCTCAACCGATCGAAGAGGCAGAATACGCAAGCCAGGGATCAGCCCGG
* ** * *
25867772 CCCCCCTACGTTCTACCGATCCTACTGTCACAACCCTCGGTCTGGTCTAATCTTAGACTGGGAAT
131 CCCCCCTACGTGCTACCGATCCTACTACCACAACCCTAGGTCTGGTCCAATCTTAGACTGGGAAT
* * **
25867837 GAACTCCGTATGCTTAGACTGAGGATGAACTCCATATGCGCAAGTCAACCCACGAAACGTGCGTG
196 GAACTCCATATGCTTAGACTGAGGATGAACTCCATATGCGCAAGTCAACCCACGAAACGAGAATG
* * * * *
25867902 CGAGTGCTCAGCCGATCGGAGAGCCATAATGCGAAAGTCGGGGATCAGCCCTATCCCCCTCTGTG
261 CGAGCGCTCAGCCGACCAGAGAGCCAGAATGCGAAAGCCGGGGATCAGCCCTATCCCCCTCTGTG
25867967 TGCTGTCGATCCCACTGTTGGTCCTGTTG
326 TGCTGTCGATCCCACTGTTGGTCCTGTTG
* * *
25867996 CCACAACCCTCTATTCGGCTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCA
1 CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCA
* * * * **
25868060 CGAAACGAGCGTGCGGGCGCTCAGCCGATCTG-AGAGGCAGAATACGCAAGCCCGGGATCTGGTC
65 CAAAACGAGCGTGCGGGCGCTCAACCGATC-GAAGAGGCAGAATACGCAAGCCAGGGATCAGCCC
* * *
25868124 GGTCCCCCCTGCGTGCTGCCGATCCTACTACCGCAACCC-AGGAT-TCGGTCCAATCTTAGACTG
129 GG-CCCCCCTACGTGCTACCGATCCTACTACCACAACCCTAGG-TCT-GGTCCAATCTTAGACTG
* *
25868187 GGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGC-CTAAGTCAACCCACGAAATG
191 GGAATGAACTCCATATGCTTAGACTGAGGATGAACTCCATATGCGC-AAGTCAACCCACGAAACG
* *
25868251 AGAATGCGAGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATC
255 AGAATGCGAGCGCTCAGCCGACCAGAGAGCCAGAATGCGAAAGCCGGGGATC
25868303 GAACGGCTGG
Statistics
Matches: 264, Mismatches: 37, Indels: 11
0.85 0.12 0.04
Matches are distributed among these distances:
354 114 0.43
355 150 0.57
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (354 bp):
CCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCAC
AAAACGAGCGTGCGGGCGCTCAACCGATCGAAGAGGCAGAATACGCAAGCCAGGGATCAGCCCGG
CCCCCCTACGTGCTACCGATCCTACTACCACAACCCTAGGTCTGGTCCAATCTTAGACTGGGAAT
GAACTCCATATGCTTAGACTGAGGATGAACTCCATATGCGCAAGTCAACCCACGAAACGAGAATG
CGAGCGCTCAGCCGACCAGAGAGCCAGAATGCGAAAGCCGGGGATCAGCCCTATCCCCCTCTGTG
TGCTGTCGATCCCACTGTTGGTCCTGTTG
Found at i:25869282 original size:159 final size:155
Alignment explanation
Indices: 25868926--25869424 Score: 391
Period size: 159 Copynumber: 3.2 Consensus size: 155
25868916 AGCTCCATAT
* * * * *
25868926 GCTTAG-CATGGAATTAACTCCGTATGCCTAAGCTAACCCACGAAATGAGTGTATAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAG
* * * * * *
25868990 CCGATCGAAGAGGCAGAATACGCAATCCGGGGATCGACCCGCCCCCTGTGTGCTATCGATCCTGC
66 CCGACCAAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGCCCCCTGCGTGCTATCGATCCCGC
* *
25869055 TGCCACAACCCTCGATCCGGTCTGA
131 TACCACAACCCTCGATCCGGTCAGA
* * * * * * * * *
25869080 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAGCACACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCA
* * * * *
25869144 GCCGACCAAAGAGGCATAATGCTCAAGCCGAGGATCGACCCGGTCCCCTTCTGCGTGCTGTCGGT
65 GCCGACCAAAGAGGCAGAATACGCAAGCCGAGGATCGACCC-G-CCCC--CTGCGTGCTATCGAT
*
25869209 CCCGCTACCACAACCCTCGGTCCGGCTCAG-
126 CCCGCTACCACAACCCTCGATCCGG-TCAGA
* * * * * **
25869239 GCTTTGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAAC-AGGTGTACGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTACAGGCACTCA
** * * * * * * *
25869303 GCC-ACCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCTCTCTTGCGTGCTACCGAT
65 GCCGA-CCAAAGAGGCAGAATACGCAAGCCGAGGATCGACCCG--C-CCCCTGCGTGCTATCGAT
** *
25869367 CCTACTACCACAACCCTCGGTCCGGTTC-GA
126 CCCGCTACCACAACCCTCGATCCGG-TCAGA
* *
25869397 TCTTAGAC-TGGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
25869425 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
154 6 0.02
155 76 0.28
156 1 0.00
157 6 0.02
158 61 0.23
159 114 0.42
160 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAG
CCGACCAAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGCCCCCTGCGTGCTATCGATCCCGC
TACCACAACCCTCGATCCGGTCAGA
Found at i:25869434 original size:26 final size:26
Alignment explanation
Indices: 25869398--25869450 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25869388 CCGGTTCGAT
25869398 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25869424 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25869450 C
1 C
25869451 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25869794 original size:26 final size:26
Alignment explanation
Indices: 25869754--25869804 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25869744 CAGTCTGATC
*
25869754 TTAGAGTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
25869780 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
25869805 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.33, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:25870091 original size:367 final size:353
Alignment explanation
Indices: 25869081--25870246 Score: 1138
Period size: 367 Copynumber: 3.3 Consensus size: 353
25869071 CCGGTCTGAT
* * * * * * * * * *
25869081 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAGCACACGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACCAGCGTACGGACGCTCAGC
* ** * *
25869146 CGACCAAAGAGGCATAATGCTCAAGCCGAGGATC-GACCCGGTCCCCTTCTGCGTGC--T-G---
66 CAACCGGAGAGGCATAATGCGCAAGCCGAGGATCAG-CCCGGTTCCCTTCTGCGTGCTGTAGATC
* * ** * *
25869204 T--C-G---GTCCCGCTACCACAACCCTCGGTCCGGCTCAGGCTTTGACATGGAATG-AGCTCCC
130 TCGCTGCCAGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTA-CTCCG
* * *
25869262 TATGCCTAAGCCAACCCACGAAACAGGT-GTACGGGTGCTCAGCCACCCGGAGAGGCAGAATGCG
194 TATGCCTAAGCCAACCCACGAAAC-GATCGTGCGGGTGCTCAG-C-CTCGGAGAGGCAGAATGCG
* * * * * *
25869326 CAAGCTGGGGATCGGCCCGATCTCTCTTGCGTGCTACCGATCCTACTACCACAACCCTCGGTCCG
256 CAAGCTGGGGATCGGCCCGATCCCACCTGCGTGCTACCGATCCTGCTACCACAACCCTCGATCCA
*
25869391 GT-TCGATCTTAGACTGGGAATGAACTCCATATG
321 GTCT-GATCTTAGACTGGGAATGAACTCCGTATG
* *
25869424 CTTAGACTGGGGATGAACTCCGTATGCCTAGGTCAACCCACGAAACCAGCGTGCGGACGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACCAGCGTACGGACGCTCAGC
* * *
25869489 CAACCGGAGAGGCATATTGCGCAAGCCGGGGATCAGCCCGGTTCCCTTCTGCGTGCTGTCGATCT
66 CAACCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTTCCCTTCTGCGTGCTGTAGATCT
* ** * * * * *
25869554 CGCTGTCAGTCCTATTGCCACAACCCTCGGT-CTGACTGGGGTTTAGATATGGAATGTACTCTGT
131 CGCTGCCAGTCCTGCTACCACAACCCTCGGTCCAG-CTGGGGCTTAGACATGGAATGTACTCCGT
* * * * ** *
25869618 ATGCCGAAGCCAACCCACGTAATGATCATGCGGGCACTTAGCCTACTGGAGAGGCAGAATGCGCA
195 ATGCCTAAGCCAACCCACGAAACGATCGTGCGGGTGCTCAGCCT-C-GGAGAGGCAGAATGCGCA
* * * *
25869683 AGCTGGGGATCGGCCCGGT-CCACCTTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAATCCAG
258 AGCTGGGGATCGGCCCGATCCCACC-TGCGTGCTACCGATCCTGCTACCACAACCCTCGATCCAG
*
25869747 TCTGATCTTAGAGTGGGAATGAACTCCGTATG
322 TCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
25869779 GTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGATCGTACAGG-CGCTCAG
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACCAGCGTAC-GGACGCTCA-
25869843 TCGGCCAGAGAGGCCAGCCGGAGAGGCATAATGCGCAAGCC-AGGATCAGCCCGGTCTCCC-TCT
64 ---GCC----A----A-CCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGT-TCCCTTCT
*
25869906 GCGTGCTGTAGATC-CTGCTGCCAGTCCTGCTACCACAACCCTCAGTCCAGCTGGGGCTTAGACA
116 GCGTGCTGTAGATCTC-GCTGCCAGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACA
* * *
25869970 TGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGATCGTGCGGTTGCTCAACCGGTCGAA
180 TGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGATCGTGCGGGTGCTCAGCC--TCGGA
* * * * **
25870035 GAGGCAGATTGCGCAAGCTGAGGATCGACCCGATCCCACCTGCATGCTGTCGATCCTGCTACCAC
243 GAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCACCTGCGTGCTACCGATCCTGCTACCAC
* **
25870100 AACCCTCGATCCCA-TCTGATCTTAGACTTGGAATGAACTTTGTATG
308 AACCCTCGAT-CCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** * *
25870146 CTTAGACTGGGGATGAACTCAGTATGCCTAAGTCAATCCACAAAATGAGCGTGCGG-CACTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACCAGCGTACGGACGCTCAGC
* * ** **
25870210 CGATCAAAGAGGCAGGATGCGCAAGCCGAGGATCAGC
66 CAACCGGAGAGGCATAATGCGCAAGCCGAGGATCAGC
25870247 GGGTGGTAGG
Statistics
Matches: 675, Mismatches: 106, Indels: 73
0.79 0.12 0.09
Matches are distributed among these distances:
343 102 0.15
344 1 0.00
345 1 0.00
346 1 0.00
349 1 0.00
351 1 0.00
352 1 0.00
353 20 0.03
354 18 0.03
355 220 0.33
356 4 0.01
359 3 0.00
362 3 0.00
363 1 0.00
366 8 0.01
367 251 0.37
368 38 0.06
369 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (353 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACCAGCGTACGGACGCTCAGC
CAACCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTTCCCTTCTGCGTGCTGTAGATCT
CGCTGCCAGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCGTA
TGCCTAAGCCAACCCACGAAACGATCGTGCGGGTGCTCAGCCTCGGAGAGGCAGAATGCGCAAGC
TGGGGATCGGCCCGATCCCACCTGCGTGCTACCGATCCTGCTACCACAACCCTCGATCCAGTCTG
ATCTTAGACTGGGAATGAACTCCGTATG
Found at i:25870170 original size:26 final size:26
Alignment explanation
Indices: 25870120--25870172 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25870110 CCCATCTGAT
* **
25870120 CTTAGACTTGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
25870146 CTTAGACTGGGGATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
25870172 C
1 C
25870173 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:25870859 original size:26 final size:26
Alignment explanation
Indices: 25870830--25870882 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25870820 GGCTCAAAAT
*
25870830 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
25870856 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25870882 C
1 C
25870883 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25871560 original size:316 final size:320
Alignment explanation
Indices: 25870855--25871682 Score: 782
Period size: 316 Copynumber: 2.6 Consensus size: 320
25870845 AGCTCCGTAT
* * * * *
25870855 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATAAGTGTGCCGGCGCTTAG
1 GCTTAGACAT-GAATG-ACTCCGTATGCCTAAGCCAACCCATGAAA-AGGCGTGCGGGCGCTCAG
* * * * **
25870920 CCGACCAGAGAGACAGAATGTGCAAGCCGGGGAACGACCCGATCCCCCCTACCTGCTGTCGATCC
63 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACCTGCTACCGATCC
* **
25870985 TGCTGCCACAACCCTCGGTCCGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
128 TGCTGCCACAACCCTCGATCCAATCCGATCCTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
* * * * ** * * *
25871050 CTCAAAAAATGAGCGTGTGGCTGTTGAGCCGGTCGAAGAGGCATAATACACAAGCCGAGGATCAG
193 CCCAAAAAACGAGCATGAGGCTACTGAGCCAGCCAAAGAGGCATAATACACAAGCCGAGGATCAG
* * * *
25871115 CCCGGTCCCCTCTACATGCTACCGATCTCACTACCAGTCCTGCTACCTCAACCCTCAGTCTGGCT
258 CCCGATCCCCTCTACATG---CCGA--TCACTACCAGTCCCGCTACCCCAACCCTCAGTCCGGCT
25871180 GGG
318 GGG
* * *
25871183 GCTTAGACGTTGAATGTACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCAG
1 GCTTAGAC-ATGAATG-ACTCCGTATGCCTAAGCCAACCCATGAAAAG-GCGTGCGGGCGCTCAG
* * * * *
25871248 CCGACCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTACCCCC-GCGTGCTACCGATCT
63 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACCTGCTACCGATCC
* * * * * * *
25871312 TGCTGTCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAATTCTGTATGCTTAAGTCAA
128 TGCTGCCACAACCCTCGATCCAATCCGATCCTAGACTGGGAATGAACTCCGTATGCATAAGTCAA
** ** * *
25871377 CCCACGAAACGAGCATGCAGGC-ACTGAGCCAGCCAAAGAGGCATAATACGTAAGCCGGGGATCG
193 CCCAAAAAACGAGCATG-AGGCTACTGAGCCAGCCAAAGAGGCATAATACACAAGCCGAGGATCA
* * * * * *
25871441 GCTCGAT-CCCTCT-C-TG-CG-T-GCTGCCAGTCCCGCTGCCCCAACCCTCGGTCCGGTTGGG
257 GCCCGATCCCCTCTACATGCCGATCACTACCAGTCCCGCTACCCCAACCCTCAGTCCGGCTGGG
* *
25871499 GCTTAGACATGCAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAG
1 GCTTAGACATG-AATGA-CTCCGTATGCCTAAGCCAACCCATGAAA-AGGCGTGCGGGCGCTCAG
* * * * * * *
25871564 CCGGCCGGAGAGGCAGAATGCGCAAGACGGGGATTGGCCCGGTCCCCCCTACATTG-T--TGAGT
63 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTAC-CTGCTACCGA-T
* * *** *
25871626 -CTGCTGCCGCAACCCTCGGTCTGGTCC-ACTCTTAGACTGGGAATGAACTCCGTATGC
126 CCTGCTGCCACAACCCTCGATCCAATCCGA-TCCTAGACTGGGAATGAACTCCGTATGC
25871683 TTAGACTAGG
Statistics
Matches: 411, Mismatches: 79, Indels: 33
0.79 0.15 0.06
Matches are distributed among these distances:
314 1 0.00
315 51 0.12
316 127 0.31
317 4 0.01
318 2 0.00
320 2 0.00
324 2 0.00
325 1 0.00
326 6 0.01
327 115 0.28
328 99 0.24
329 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (320 bp):
GCTTAGACATGAATGACTCCGTATGCCTAAGCCAACCCATGAAAAGGCGTGCGGGCGCTCAGCCG
ACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACCTGCTACCGATCCTGC
TGCCACAACCCTCGATCCAATCCGATCCTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCC
AAAAAACGAGCATGAGGCTACTGAGCCAGCCAAAGAGGCATAATACACAAGCCGAGGATCAGCCC
GATCCCCTCTACATGCCGATCACTACCAGTCCCGCTACCCCAACCCTCAGTCCGGCTGGG
Found at i:25871595 original size:159 final size:154
Alignment explanation
Indices: 25871145--25871597 Score: 401
Period size: 157 Copynumber: 2.9 Consensus size: 154
25871135 ACCGATCTCA
* * * * *
25871145 CTACCAGTCCTGCTACCTCAACCCTCAGTCTGGCTGGGGCTTAGACGTTGAATGTACTCCGTATG
1 CTACCAGTCCTGCTGCCCCAACCCTCGGTCCGGTTGGGGCTTAGAC--TGAATG-ACTCCGTATG
* * * *
25871210 CCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGTAAGC
63 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGTAAGC
*
25871275 CGGGGATCGACCCGGTACCCCCGCGTG
128 CGGGGATCGACCCGATACCCCCGCGTG
* * * * ** ** * *
25871302 CTACC-GATCTTGCTGTCGCAACCCTCGATCCAATCT-GATCTTAGACTGGGAATGAATTCTGTA
1 CTACCAG-TCCTGCTGCCCCAACCCTCGGTCCGGT-TGGGGCTTAGACT--GAATG-ACTCCGTA
* * * * * * * * * *
25871365 TGCTTAAGTCAACCCACGAAACGAGCATGCAGGCACTGAGCCAGCCAAAGAGGCATAATACGTAA
61 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGTAA
* *
25871430 GCCGGGGATCGGCTCGAT-CCCTCTCTGCGTG
126 GCCGGGGATCGACCCGATACCC-C-C-GCGTG
* * *
25871461 CTGCCAGTCCCGCTGCCCCAACCCTCGGTCCGGTTGGGGCTTAGACATGCAATGAGCTCCCTATG
1 CTACCAGTCCTGCTGCCCCAACCCTCGGTCCGGTTGGGGCTTAGAC-TG-AATGA-CTCCGTATG
* *
25871526 CCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAG
63 CCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGTAAG
*
25871590 ACGGGGAT
127 CCGGGGAT
25871598 TGGCCCGGTC
Statistics
Matches: 225, Mismatches: 58, Indels: 24
0.73 0.19 0.08
Matches are distributed among these distances:
155 1 0.00
156 4 0.02
157 108 0.48
158 6 0.03
159 104 0.46
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (154 bp):
CTACCAGTCCTGCTGCCCCAACCCTCGGTCCGGTTGGGGCTTAGACTGAATGACTCCGTATGCCT
AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGTAAGCCGG
GGATCGACCCGATACCCCCGCGTG
Found at i:25871697 original size:26 final size:26
Alignment explanation
Indices: 25871656--25871708 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25871646 CTGGTCCACT
25871656 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25871682 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
25871708 C
1 C
25871709 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25872984 original size:12 final size:12
Alignment explanation
Indices: 25872967--25872992 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
25872957 AACAGGCGTG
25872967 CGGGCGTTCAAC
1 CGGGCGTTCAAC
25872979 CGGGCGTTCAAC
1 CGGGCGTTCAAC
25872991 CG
1 CG
25872993 ATCCCTCCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.35, G:0.35, T:0.15
Consensus pattern (12 bp):
CGGGCGTTCAAC
Found at i:25873087 original size:26 final size:26
Alignment explanation
Indices: 25873046--25873098 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25873036 CCGGTCCGAT
25873046 CTTAGACTGGGAATGAACTCCACATG
1 CTTAGACTGGGAATGAACTCCACATG
*
25873072 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCACATG
25873098 C
1 C
25873099 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:25873425 original size:26 final size:26
Alignment explanation
Indices: 25873374--25873429 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
25873364 CCGGTTCGAT
*
25873374 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
25873400 CTTAGACTAGGG-ATGAAC-TCTATATG
1 CTTAGACT-GGGAATGAACTTC-ATATG
25873426 CTTA
1 CTTA
25873430 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 2 0.07
26 22 0.81
27 3 0.11
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:25873493 original size:328 final size:334
Alignment explanation
Indices: 25873025--25873667 Score: 735
Period size: 328 Copynumber: 1.9 Consensus size: 334
25873015 TTTGCTACCG
**
25873025 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCACATGCTTAGACTAGGGATGAAC
1 CAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCACATGCTTAGACTAGGGATGAAC
* * * *
25873090 TCCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGACGCTTAGCCGACTGAAAAGGTCGACC
66 TCCATATGCCTAAGTCAACCCACAAAACAAGCGTACGGACGCTCAACCGACTGAAAAGGTCGACC
* * *
25873155 GGAAAGGCATAAAACGCAAGTCAGGGATCAGCCC-GATCCCACTCTGCATGCT-GCGATCCCGCT
131 GGAAAGGCATAAAACGAAAGTCAGGGATCAGCCCAG-TCCCACTCTACATGCTACCGATCCCGCT
* * * *
25873218 GCCGGTCCTGCTGCCACAA-CC-C-T-T-GATGTAGCTTAGACGTGGAATGTACTCCGTATGCCT
195 GCCAGTCCTGCTCCCACAACCCTCGTCTGGATGGAGCTTAGACGTGGAATATACTCCGTATGCCT
* *
25873278 AAGCCAACCCACGAAATGAGCATACGGGCGCTTAGCCGATCGAAGAGGCAGAATGTGCTGTCGAT
260 AAGCCAACCCACGAAATGAGCATACGGGCGCTCAACCGATCGAAGAGGCAGAATGTGCTGTCGAT
25873343 CCTGCTGCCA
325 CCTGCTGCCA
* * **
25873353 CAACCCTCAATCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGGATGAAC
1 CAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCACATGCTTAGACTAGGGATGAAC
* * * * ** * *** **
25873418 TCTATATGCTTAAGTCAACCCACAAAACGAGCGTATGGGTGCTCAACCG-GTCGGGGAGGTCGGT
66 TCCATATGCCTAAGTCAACCCACAAAACAAGCGTACGGACGCTCAACCGACT-GAAAAGGTCGAC
* ** ** * * * * *
25873482 CGGAGAGGCATAATGCGAAAGTTGGGGATCAGTCCAGTCCCCCTTTACGTGCTACCGATCTCGCT
130 CGGAAAGGCATAAAACGAAAGTCAGGGATCAGCCCAGTCCCACTCTACATGCTACCGATCCCGCT
* * * **
25873547 GCCAGTCCTGCTCCCATAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATATACTTTGTATGCC
195 GCCAGTCCTGCTCCCACAACCCTC-GTCTGGATGGAGCTTAGACGTGGAATATACTCCGTATGCC
* * * * * *
25873612 TAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGTAGAATG
259 TAAGCCAACCCACGAAATGAGCATACGGGCGCTCAACCGATCGAAGAGGCAGAATG
25873668 CACAAGCCAG
Statistics
Matches: 254, Mismatches: 52, Indels: 11
0.80 0.16 0.03
Matches are distributed among these distances:
327 1 0.00
328 145 0.57
329 26 0.10
330 2 0.01
331 1 0.00
333 1 0.00
334 1 0.00
335 77 0.30
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (334 bp):
CAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCACATGCTTAGACTAGGGATGAAC
TCCATATGCCTAAGTCAACCCACAAAACAAGCGTACGGACGCTCAACCGACTGAAAAGGTCGACC
GGAAAGGCATAAAACGAAAGTCAGGGATCAGCCCAGTCCCACTCTACATGCTACCGATCCCGCTG
CCAGTCCTGCTCCCACAACCCTCGTCTGGATGGAGCTTAGACGTGGAATATACTCCGTATGCCTA
AGCCAACCCACGAAATGAGCATACGGGCGCTCAACCGATCGAAGAGGCAGAATGTGCTGTCGATC
CTGCTGCCA
Found at i:25873771 original size:26 final size:26
Alignment explanation
Indices: 25873742--25873794 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25873732 CCGGTCTGAT
25873742 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
25873768 CTTATATTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25873794 C
1 C
25873795 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25873924 original size:184 final size:184
Alignment explanation
Indices: 25873605--25873949 Score: 433
Period size: 184 Copynumber: 1.9 Consensus size: 184
25873595 AATATACTTT
* ** * *
25873605 GTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGTAGAATGCA
1 GTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGCA
** * * *
25873670 CAAGCCAGGGATCGGGCCGATCCCTCCTACGTGCTGTCGATCCTGCTGCAGCAACCCTCGATCCG
66 CAAGCCAGGGATCGACCCGATCCCCCCTACATGCTGTCGATCCTGCAGCAGCAACCCTCGATCCG
*
25873735 GTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTATATTGGGGATGAACTCC
131 GTCTGATCTTAGACTAGGAATAAACTCCGTATGCTTATATTGGGGATGAACTCC
* * * * *
25873789 GTATGCCTATGTCAACCCAAGAAATGAGTGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCG
1 GTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGCA
* * * ** *
25873854 CAAGTC-GAGGATCGACCC-AGTCCCCCCTGCATGCTGTTGATCCTGCAGTTGCAACCCTCGGTC
66 CAAGCCAG-GGATCGACCCGA-TCCCCCCTACATGCTGTCGATCCTGCAGCAGCAACCCTCGATC
* * *
25873917 TGGTCTGATCTTAGATTGGGAATAAACTCCGTA
129 CGGTCTGATCTTAGACTAGGAATAAACTCCGTA
25873950 AGCATAAGTT
Statistics
Matches: 134, Mismatches: 25, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
183 2 0.01
184 132 0.99
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (184 bp):
GTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAGAATGCA
CAAGCCAGGGATCGACCCGATCCCCCCTACATGCTGTCGATCCTGCAGCAGCAACCCTCGATCCG
GTCTGATCTTAGACTAGGAATAAACTCCGTATGCTTATATTGGGGATGAACTCC
Found at i:25875523 original size:26 final size:26
Alignment explanation
Indices: 25875487--25875539 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25875477 TCCAATTGAT
25875487 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTTCGTATG
*
25875513 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTTCGTATG
25875539 C
1 C
25875540 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTTCGTATG
Found at i:25875895 original size:26 final size:26
Alignment explanation
Indices: 25875866--25875918 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25875856 CCGGTCCGAT
*
25875866 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25875892 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25875918 C
1 C
25875919 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25876186 original size:159 final size:159
Alignment explanation
Indices: 25875891--25876226 Score: 349
Period size: 159 Copynumber: 2.1 Consensus size: 159
25875881 AACTCCGTAT
* * *
25875891 GCTTAGACTGGGGATGAACTCCGTATGCCCAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAG
1 GCTTAGACTGGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
** * ** * * *
25875956 TCGGTCAAAGAGACATAATGCGCAAGCTCGGTTTCGGCCCGGTCCCCCTCTGCGTGCTGCCGGTC
66 TCGACCAAAGAGACAGAATGCGCAAGCTCGGGATCGGCCCGGTCCCCCTCTACATGCTGCCGATC
25876021 CCGCTGCCACAACCCTTGGTCCGGTTGGG
131 CCGCTGCCACAACCCTTGGTCCGGTTGGG
* * * * *
25876050 GCTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAA
** * *
25876114 GTCGACCGGAG-GGCAGAATGCGCAAGCT-GAGGATCGGCCCGGT-CCCC-CTACATGCTGTCGA
65 GTCGACCAAAGAGACAGAATGCGCAAGCTCG-GGATCGGCCCGGTCCCCCTCTACATGCTGCCGA
* ** * * ** *
25876175 TCCTGCTGCTGCAACTCTCGGTCCGGTCCGA
129 TCCCGCTGCCACAACCCTTGGTCCGGTTGGG
* *
25876206 TCTTACACTGGGAATGAACTC
1 GCTTAGACTGGGAATGAACTC
25876227 TATATGCTTA
Statistics
Matches: 143, Mismatches: 31, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
155 1 0.01
156 49 0.34
157 5 0.03
158 26 0.18
159 61 0.43
160 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
TCGACCAAAGAGACAGAATGCGCAAGCTCGGGATCGGCCCGGTCCCCCTCTACATGCTGCCGATC
CCGCTGCCACAACCCTTGGTCCGGTTGGG
Found at i:25883694 original size:158 final size:158
Alignment explanation
Indices: 25883362--25883699 Score: 344
Period size: 158 Copynumber: 2.1 Consensus size: 158
25883352 GTCCGGCCCG
* ** * * * *
25883362 ATCTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCACTGA
1 ATCTTAGACTGGGAATGAACTCCCCATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCA
* * ** * * *
25883427 GCCGACCGAAGAGGCATAATGCGGAAGTCGGGGATATGCCCGGTCCCCCTCTACGTGCTGTCGAT
66 GCCGACAGAAGAGGCAGAATGCACAAGTCGGGGATACGCCCGATCCCCCTCTACATGCTGTCGAT
* **
25883492 CCTGCTGCCACAACCCTCAGTCTAGCTG
131 CCTGCTGCCACAACCCTCAGTCAAGCCA
** * * * *
25883520 GGCTTAGACAT-CGAATGAGCTCCCCATGCCTAAGCCAACCCACAAAACGGGCGTACGGGCACTC
1 ATCTTAGAC-TGGGAATGAACTCCCCATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTC
*
25883584 AGCCGGCTAG-AGAGGCAGAATGCACAAG-CTGGGGAT-CGACCCGATCCCCC-CTACATGCTGT
65 AGCCGAC-AGAAGAGGCAGAATGCACAAGTC-GGGGATACG-CCCGATCCCCCTCTACATGCTGT
* * * *
25883645 CGATCCTGCTGTCGCAACCCTCGGTCCAATCCA
127 CGATCCTGCTGCCACAACCCTCAGT-CAAGCCA
25883678 ATCTTAGACTGGGAATGAACTC
1 ATCTTAGACTGGGAATGAACTC
25883700 TATATGCTTA
Statistics
Matches: 142, Mismatches: 32, Indels: 12
0.76 0.17 0.06
Matches are distributed among these distances:
157 35 0.25
158 105 0.74
159 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (158 bp):
ATCTTAGACTGGGAATGAACTCCCCATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCA
GCCGACAGAAGAGGCAGAATGCACAAGTCGGGGATACGCCCGATCCCCCTCTACATGCTGTCGAT
CCTGCTGCCACAACCCTCAGTCAAGCCA
Found at i:25883731 original size:26 final size:26
Alignment explanation
Indices: 25883680--25883732 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25883670 CCAATCCAAT
*
25883680 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25883706 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
25883732 C
1 C
25883733 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25884033 original size:353 final size:354
Alignment explanation
Indices: 25883488--25884149 Score: 879
Period size: 353 Copynumber: 1.9 Consensus size: 354
25883478 TACGTGCTGT
* *
25883488 CGATCCTGCTGCCACAACCCTCAGTCTAGCTGGGCTTAGACATCGAATGAGCTCCCCATGCCTAA
1 CGATCCAGCTGCCACAACCATCAGTCTAGCTGGGCTTAGACATCGAATGAGCTCCCCATGCCTAA
* *
25883553 GCCAACCCACAAAACGGGCGTACGGGCACTCAGCCGGCTAGAGAGGCAGAATGCACAAGCTGGGG
66 GCCAACCCACAAAACGAGCGTACGGGCACTCAGCCGGCTAGAGAGGCAGAATGCACAAGCCGGGG
* ** * *
25883618 ATCGACCCGATCCCCCCTACATGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCAATCCAATCTT
131 ATCGACCCGATCCCCCCTACATGCTATCGATCCTGCTACCGCAACCCTCGATCCAATCCAATCCT
*
25883683 AGACTGGGAATGAA-CTCTATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAC
196 AGACTGGGAATAAATCTC-ATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
25883747 GAAACAAGCGTGTGGGTGCTCAATCGACCGGAGAGGCATA-ATGCGCAAGCTGGGGATCAACCCT
260 GAAACAAGCGTGCGGGCGCTCAACCGACCAGAGAGGCA-AGATGCGCAAGCTGGGGATCAACCCT
25883811 ATCCCTCTCTGCGTGCTGTCGATCTCACTGC
324 ATCCCTCTCTGCGTGCTGTCGATCTCACTGC
* * * **
25883842 CGATCCAGCTGCCACAACCATCGGTCTGGCTGGGGCTTAGACATGGAAT-A-CTCCGTATGCCTA
1 CGATCCAGCTGCCACAACCATCAGTCTAGCT-GGGCTTAGACATCGAATGAGCTCCCCATGCCTA
* * * *
25883905 AGCCAACCCACGAAACGAGCGTGA-GGGCGCTCAGTCGGCCGTA-A-AGGCAGAATGCGCAAGCC
65 AGCCAACCCACAAAACGAGCGT-ACGGGCACTCAGCCGG-C-TAGAGAGGCAGAATGCACAAGCC
* * * * * * **
25883967 GGGGATTGGCTCGATCCCCCTTACGTGCTATCGATCTTGCTACCGCAACCCTCGATCCGGTCCAA
127 GGGGATCGACCCGATCCCCCCTACATGCTATCGATCCTGCTACCGCAACCCTCGATCCAATCCAA
* * * *
25884032 TCCTAGACTGGGAATAAATTTCGTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACC
192 TCCTAGACTGGGAATAAATCTCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACC
* * *
25884097 CATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAAGATGCGCAAGC
257 CACGAAACAAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAAGATGCGCAAGC
25884150 CAGGGATCGA
Statistics
Matches: 264, Mismatches: 38, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
352 1 0.00
353 212 0.80
354 33 0.12
355 18 0.07
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (354 bp):
CGATCCAGCTGCCACAACCATCAGTCTAGCTGGGCTTAGACATCGAATGAGCTCCCCATGCCTAA
GCCAACCCACAAAACGAGCGTACGGGCACTCAGCCGGCTAGAGAGGCAGAATGCACAAGCCGGGG
ATCGACCCGATCCCCCCTACATGCTATCGATCCTGCTACCGCAACCCTCGATCCAATCCAATCCT
AGACTGGGAATAAATCTCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACG
AAACAAGCGTGCGGGCGCTCAACCGACCAGAGAGGCAAGATGCGCAAGCTGGGGATCAACCCTAT
CCCTCTCTGCGTGCTGTCGATCTCACTGC
Found at i:25885227 original size:26 final size:26
Alignment explanation
Indices: 25885191--25885243 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25885181 CCGGTCCGAT
*
25885191 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
25885217 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25885243 C
1 C
25885244 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25885595 original size:26 final size:26
Alignment explanation
Indices: 25885559--25885611 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25885549 TCTGTTCGAT
*
25885559 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
*
25885585 CTTAGACTAGGGATGAACTCAGTATG
1 CTTAGACTAGGAATGAACTCAGTATG
25885611 C
1 C
25885612 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCAGTATG
Found at i:25886241 original size:21 final size:21
Alignment explanation
Indices: 25886216--25886258 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
25886206 TGCAATGGTG
*
25886216 CCCCTCTACATGCTATCGATC
1 CCCCTCTACATGCTACCGATC
25886237 CCCCTCTACATGCTACCGATC
1 CCCCTCTACATGCTACCGATC
25886258 C
1 C
25886259 TGCTATCGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.47, G:0.09, T:0.26
Consensus pattern (21 bp):
CCCCTCTACATGCTACCGATC
Found at i:25886268 original size:12 final size:12
Alignment explanation
Indices: 25886247--25886287 Score: 73
Period size: 12 Copynumber: 3.4 Consensus size: 12
25886237 CCCCTCTACA
*
25886247 TGCTACCGATCC
1 TGCTATCGATCC
25886259 TGCTATCGATCC
1 TGCTATCGATCC
25886271 TGCTATCGATCC
1 TGCTATCGATCC
25886283 TGCTA
1 TGCTA
25886288 CCATAACCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.17, C:0.34, G:0.17, T:0.32
Consensus pattern (12 bp):
TGCTATCGATCC
Found at i:25886499 original size:26 final size:26
Alignment explanation
Indices: 25886470--25886522 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25886460 CCGGTCTGAT
*
25886470 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25886496 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25886522 C
1 C
25886523 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25887190 original size:26 final size:26
Alignment explanation
Indices: 25887154--25887206 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25887144 CCAGTCTGAT
* *
25887154 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25887180 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25887206 C
1 C
25887207 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25887553 original size:26 final size:26
Alignment explanation
Indices: 25887524--25887577 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
25887514 TGTTCGATCT
* *
25887524 TAGATTGAGAATGAACTCTGTATGCC
1 TAGACTGAGAATGAACTCTGTATACC
* *
25887550 TAGACTGGGGATGAACTCTGTATACC
1 TAGACTGAGAATGAACTCTGTATACC
25887576 TA
1 TA
25887578 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (26 bp):
TAGACTGAGAATGAACTCTGTATACC
Found at i:25887661 original size:368 final size:364
Alignment explanation
Indices: 25886972--25888280 Score: 1224
Period size: 368 Copynumber: 3.6 Consensus size: 364
25886962 GATTCCGTTA
* * * *** *
25886972 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCTAACCCA
1 CCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTA-CTTTGTATGCCTAAGCCAACCCA
* * * ** * ** * * * * * *
25887036 TGAAAGGGGCGAACGGGCGCTCAGCCAG-CTGAAGATGCAAAATGTGTAAGTCGGGGATCAGCCC
65 CGAAACGAGCGTGCGGGCGCTCATCTGGTC-GAAGAGGCAGAATGCGCAAG-CCGGCATCAGCCC
* * * * *
25887100 GATCCCCCCTGCGTGCTGCCGATTCTGCTACCGCAACCTTCAATCCAG-TCTGATCTTAGATTGG
128 GGT-CCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCTT-GATCCTGTTC-GATCTTAGATTGG
** *
25887164 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAG
190 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATACCTAAGTCAACCCACGAAACGAG
* * * * ** * *
25887229 CGTGCGGGCA-TTCAGT-AAACTGGAGAGGCCAATTAAAGAGGCATAATGTGCAAGTCGAGGATC
255 CGTGCGGGCACTT-AGTCGATC-GAAGAGGCCGATCGAAGAGGCATAATGCGCAAGTCGGGGATC
** * *
25887292 AGCCC-AGTCCCCCTCTGCGTGCT-GTGAATCCCGCTACCAGTTCTGTTG
318 AGCCCGA-TCCCCCTCTGCGTGCTACCG-ATCCCGCTGCC-GTTCTGCTG
* ** * *
25887340 CCACAACTCTCAATCTGGTTGGGGCTTAGACGTGGAATGTACTTTGTATCCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTACTTTGTATGCCTAAGCCAACCCAC
* * * ** * *
25887405 AAAATGAGTGTGCGGGCGCTCATCCAGTTGAAGAGGTAGAATGCGCAAGCCGAGCATCAGCCCAG
66 GAAACGAGCGTGCGGGCGCTCATCTGGTCGAAGAGGCAGAATGCGCAAGCCG-GCATCAGCCC-G
* * * * * *
25887470 TTTCGCCTGAGTGCTGTCGATCCTACTACCGCAACCGTTGATCCTGTTCGATCTTAGATTGAGAA
129 GTCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACC-TTGATCCTGTTCGATCTTAGATTGGGAA
* * *
25887535 TGAACTCTGTATGCCTAGACTGGGGATGAACTCTGTATACCTAAGTCAACCCACGAAACAAGCGT
193 TGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATACCTAAGTCAACCCACGAAACGAGCGT
* * * *
25887600 ACGGGCACTTAGTCGATCGAAAAGACCGATCGAAGAGGCATAATGCACAAG-CTGGGGATCAGCC
258 GCGGGCACTTAGTCGATCGAAGAGGCCGATCGAAGAGGCATAATGCGCAAGTC-GGGGATCAGCC
* * * *
25887664 CGATCCCTCTCTACATGCTACCGATCCCGCGGCCGTTCCTGCTG
322 CGATCCCCCTCTGCGTGCTACCGATCCCGCTGCCGTT-CTGCTG
* * * * * * *
25887708 CCACATCCCTCGGTCTGACTAGGGCTTAGACATGGAATGTACTTCGTATGCCTCAGCCAACCCAT
1 CCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTACTTTGTATGCCTAAGCCAACCCAC
* * * * * * * *
25887773 GAAACGAGCGTACGGGCACTTAGCTGGCCGAAGAGGCAGAATGCGTAAGCCCGGGATCGGCCCGG
66 GAAACGAGCGTGCGGGCGCTCATCTGGTCGAAGAGGCAGAATGCGCAAG-CCGGCATCAGCCCGG
* * *
25887838 TCCCCCTTGCGTGCTGTCGATCCTGCTACCACAACCCTCGAT-CTGATTCGATCTTAGACTGGGA
130 TCCCCC-TGCGTGCTGTCGATCCTGCTACCGCAA-CCTTGATCCTG-TTCGATCTTAGATTGGGA
* * *
25887902 ATGAACTCCGTATGCTTAGACTGGGGATGAACTTTGTATTCCTAAGTCAACCCATGAAACGAGCG
192 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATACCTAAGTCAACCCACGAAACGAGCG
* * ** * * * * *
25887967 TGCAGGCACTCAACCGGTC-AGAGAGGCTGATCGAAGCGGCATAATGCGCAAGTCGGTGATCAAC
257 TGCGGGCACTTAGTCGATCGA-AGAGGCCGATCGAAGAGGCATAATGCGCAAGTCGGGGATCAGC
* * *
25888031 CCGATCCCCCTCTGTGTGCTACCGATCTCGCTGCCGGTCCTGCTG
321 CCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCC-GTTCTGCTG
* *
25888076 CCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGCACTATGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTACTTTGTATGCCTAAGCCAACCCAC
* * * * *
25888141 GAAACGAGCGTGC-GGTGCTCAGT-TGGTCGAAGAGGCAGAATGCGCAAGCTGGAGATCGGCCTG
66 GAAACGAGCGTGCGGGCGCTCA-TCTGGTCGAAGAGGCAGAATGCGCAAGCCGG-CATCAGCCCG
* * * ** * * *
25888204 ATCCCCCTGCGT-CTGTAGATCCTACTGTCGCAACCCTCGATCC-GATCCGATCTTAGACTGGGA
129 GTCCCCCTGCGTGCTGTCGATCCTGCTACCGCAA-CCTTGATCCTG-TTCGATCTTAGATTGGGA
25888267 ATGAACTCCGTATG
192 ATGAACTCCGTATG
25888281 AATAAGTCAA
Statistics
Matches: 768, Mismatches: 151, Indels: 47
0.80 0.16 0.05
Matches are distributed among these distances:
365 57 0.07
366 9 0.01
367 58 0.08
368 623 0.81
369 21 0.03
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (364 bp):
CCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTACTTTGTATGCCTAAGCCAACCCAC
GAAACGAGCGTGCGGGCGCTCATCTGGTCGAAGAGGCAGAATGCGCAAGCCGGCATCAGCCCGGT
CCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCTTGATCCTGTTCGATCTTAGATTGGGAATGA
ACTCCGTATGCTTAGACTGGGGATGAACTCTGTATACCTAAGTCAACCCACGAAACGAGCGTGCG
GGCACTTAGTCGATCGAAGAGGCCGATCGAAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGAT
CCCCCTCTGCGTGCTACCGATCCCGCTGCCGTTCTGCTG
Found at i:25888452 original size:159 final size:155
Alignment explanation
Indices: 25888060--25888476 Score: 394
Period size: 159 Copynumber: 2.7 Consensus size: 155
25888050 TACCGATCTC
* **
25888060 GCTGCCGGTCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGCACTATGTAT
1 GCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAC-TGGAATG-ACTCCGTAT
* ** ** *
25888125 GCCTAAGCCAACCCACGAAACGAGCGTGC-GGTGCTCAGTTGGTCGAAGAGGCAGAATGCGCAAG
64 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAACGAAGAGGCAAAATGCGCAAG
*
25888189 CTGGAGATCGGCCTGATCCCCCTGCGT
129 CTGGAGATCGGCCCGATCCCCCTGCGT
** * * * * * * * **
25888216 -CTGTAGATCCTACTGTCGCAACCCTCGATCC-GATCCGATCTTAGACTGGGAATGAACTCCGTA
1 GCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCT-GGGGCTTAGACT-GGAATG-ACTCCGTA
** * * * *
25888279 TGAATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGAACGAAGAGTCAAAATGTGCAA
63 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAACGAAGAGGCAAAATGCGCAA
*
25888344 GTTAGG-GATCGGCCCGATCCCCCTCTGCGT
128 GCT-GGAGATCGGCCCGAT-CCCC-CTGCGT
* * * *
25888374 GCTGCCGGTCCCGTTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTAT
1 GCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAC-TGGAATGA-CTCCGTAT
* *
25888439 GCCTAAGCCAACCCATGAAAC-AGGTGTGCGGGCGCTCA
64 GCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
25888477 ACCAGCTGGA
Statistics
Matches: 200, Mismatches: 50, Indels: 19
0.74 0.19 0.07
Matches are distributed among these distances:
154 3 0.01
155 70 0.35
156 38 0.19
157 6 0.03
158 8 0.04
159 72 0.36
160 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (155 bp):
GCTGCCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACTGGAATGACTCCGTATGC
CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAACGAAGAGGCAAAATGCGCAAGCT
GGAGATCGGCCCGATCCCCCTGCGT
Found at i:25888787 original size:26 final size:26
Alignment explanation
Indices: 25888758--25888811 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
25888748 GGTCTGATCT
* *
25888758 TAGATTGAGAATGAACTCTGTATGCC
1 TAGACTGAGAATGAACTCCGTATGCC
* **
25888784 TAGACTGGGGCTGAACTCCGTATGCC
1 TAGACTGAGAATGAACTCCGTATGCC
25888810 TA
1 TA
25888812 AGTCAACCCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTGAGAATGAACTCCGTATGCC
Found at i:25888821 original size:184 final size:183
Alignment explanation
Indices: 25888416--25888844 Score: 412
Period size: 184 Copynumber: 2.3 Consensus size: 183
25888406 GGCTGGGGCT
* * * * *
25888416 TAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACAGGTGTGCGGGCGCTCAACCA
1 TAGACGTGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGA-GTGTGCGGGCGCTCAACCA
* * * * * * * *
25888481 GCTGGAGAGGCAGAATGTGTAAGCCGGGGATCGGCTAGATCCCCCCTGCATGCTATCGATTCTAC
65 GCTAGAGAGGCAGAATGCGCAAGCCGAGCATCAGCCAGATCCCCCCTGCATGCTATCGATCCTAC
* * *
25888546 TGTCGCAACCCTCGATCCAGTCTGATCTTAGACTGGGGATAAACTCCGTATGCT
130 TGTCGCAACCCTCGATCCAGTCTGATCTTAGACTGAGAATAAACTCCGTATGCC
* * * * *
25888600 TAGACGTGAAATGTACTTCGTATCCCTCAGCCAACCCATGAAATGAGTGTGCGGGCGCTCATCCA
1 TAGACGTGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GAGTGTGCGGGCGCTCAACCA
* * * * ** * * *
25888665 G-TCAGAGAGGTAGAATGCGCAAGCCGAGCATCAGCCCGGTTCTGCCTGCGTGCTGTCGATCCTC
65 GCT-AGAGAGGCAGAATGCGCAAGCCGAGCATCAGCCAGATCCCCCCTGCATGCTATCGATCCTA
* * * * *
25888729 CTGTCGTAACCCTCGATCCGGTCTGATCTTAGATTGAGAATGAACTCTGTATGCC
129 CTGTCGCAACCCTCGATCCAGTCTGATCTTAGACTGAGAATAAACTCCGTATGCC
*** * * * * *
25888784 TAGAC-TGGGGCTGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCA
1 TAGACGT-GAAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-GAGTGTGCGGGCGCTCA
25888845 GTCGACCGGA
Statistics
Matches: 194, Mismatches: 48, Indels: 6
0.78 0.19 0.02
Matches are distributed among these distances:
183 2 0.01
184 191 0.98
185 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (183 bp):
TAGACGTGAAATGAACTCCGTATGCCTAAGCCAACCCATGAAAGAGTGTGCGGGCGCTCAACCAG
CTAGAGAGGCAGAATGCGCAAGCCGAGCATCAGCCAGATCCCCCCTGCATGCTATCGATCCTACT
GTCGCAACCCTCGATCCAGTCTGATCTTAGACTGAGAATAAACTCCGTATGCC
Found at i:25889153 original size:26 final size:26
Alignment explanation
Indices: 25889124--25889176 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25889114 CCGGTTCAAT
25889124 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25889150 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25889176 C
1 C
25889177 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25890464 original size:26 final size:26
Alignment explanation
Indices: 25890428--25890480 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25890418 TCAGTTCAAT
*
25890428 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
* * *
25890454 CTTAGATTGGGGACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
25890480 C
1 C
25890481 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:25890603 original size:12 final size:12
Alignment explanation
Indices: 25890586--25890615 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
25890576 CCATCTGCGT
25890586 GCTGCCGACCCC
1 GCTGCCGACCCC
25890598 GCTGCCGACCCC
1 GCTGCCGACCCC
25890610 GCTGCC
1 GCTGCC
25890616 AGTGCTGCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.07, C:0.57, G:0.27, T:0.10
Consensus pattern (12 bp):
GCTGCCGACCCC
Found at i:25891481 original size:158 final size:157
Alignment explanation
Indices: 25891193--25891682 Score: 493
Period size: 158 Copynumber: 3.1 Consensus size: 157
25891183 TTAGACATGA
* * *
25891193 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGACGCTCAGCCGGTCGAAAAG
1 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGTCGAAGAG
* * * * * * *
25891258 GAAGAATACGCAAACCGAGGATCAACCTGGTTCCCCCTGGGTGCTATCGATCCTGTTGCTGCAAC
66 GCAGAATGCGCAAGCCGAGGATC-ACCTGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAAC
25891323 CCTTGGTCCGGTCCGATCTTAGACTAGG
130 CCTTGGTCCGGTCCGATCTTAGACTAGG
* * * * * *
25891351 AATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAGCCGGTCGAAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGTCGAAGAG
* * * ** * *
25891416 GCATAATGCGCAAGCCGAGGAACGACCCGGTCCCCCTCTGCGTGCTGCCGGTCC-GCTGCCACAA
66 GCAGAATGCGCAAGCCGAGGATC-ACCTGGTCCCCC-CTGCGTGCTATCGATCCTGCTGCCGCAA
* * **
25891480 CCCTTGGTTCGG-CTGGGGCTTAGAC-ATGG
129 CCCTTGGTCCGGTC-CGATCTTAGACTA-GG
* * * * * * * *
25891509 AATGAGCTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTACGGGCGCTCAGTCGGCCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGTCGAAGAG
* * * * *
25891574 GCAGAATGCACAAGCC-AGGGATCAGCCTGGTCCCCCCTGTGTGCTTTCGATCCTACTGTCGCAA
66 GCAGAATGCGCAAGCCGA-GGATCA-CCTGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAA
* * * *
25891638 CCCTCGGTCCAGTCCTATCTTAGACTGGG
129 CCCTTGGTCCGGTCCGATCTTAGACTAGG
25891667 AATGAACTCCGTATGC
1 AATGAACTCCGTATGC
25891683 TTAGACTAGG
Statistics
Matches: 262, Mismatches: 62, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 17 0.06
158 231 0.88
159 14 0.05
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGTCGAAGAG
GCAGAATGCGCAAGCCGAGGATCACCTGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACC
CTTGGTCCGGTCCGATCTTAGACTAGG
Found at i:25891697 original size:26 final size:26
Alignment explanation
Indices: 25891656--25891708 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25891646 CCAGTCCTAT
25891656 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25891682 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
25891708 C
1 C
25891709 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.