Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 267 of 402
Found at i:25892054 original size:26 final size:26
Alignment explanation
Indices: 25892025--25892075 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
25892015 CGGTTTGATC
* * *
25892025 TTAGATTGGGAATGATCTTCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
*
25892051 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
25892076 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:25892797 original size:26 final size:26
Alignment explanation
Indices: 25892747--25892798 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25892737 GGCTCAAAAT
* * * *
25892747 CTTAGACTTGGAATGAGCTCTGTATG
1 CTTAGACATGGAATAAACTCCGTATG
25892773 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
25892799 TCTAAGCTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:25893134 original size:159 final size:158
Alignment explanation
Indices: 25892772--25893209 Score: 422
Period size: 159 Copynumber: 2.8 Consensus size: 158
25892762 AGCTCTGTAT
* * * * * *
25892772 GCTTAGACATGGAATAAACTCCGTATGTCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAG
* *
25892837 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGCTGTCGATCC
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCATGCTGCCGATCC
* ** * * * *
25892902 TGCTGCCGTAACCTTTGGTCCGGTCCGA
131 CGCTGCCACAACCCTCGGTCCGCTCAGA
* * * * * * *
25892930 TCTTAGGC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACAAGCGTACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCA
* * * * *
25892994 GCCGG-CTGAAGAGGCATAATGCGCAAGTCGGGGATC-AGCCCGGTCCCCGTCTGCATGCTGCCG
65 GCCGGCCAG-AGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCAGTCCCC-CCTGCATGCTGCCG
* *
25893057 GTCCCGCTGCCACAACCCTCGGTCCAGCT-AGG
127 ATCCCGCTGCCACAACCCTCGGTCC-GCTCAGA
* * * * *
25893089 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAG
* * * *
25893154 TCAGCCAGAGAGGCAGAATGCGCAAGCTGGGG-TC-AGCCC-GATCCCCCCTGCGTGCT
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCAG-TCCCCCCTGCATGCT
25893210 ACTGGTCCTA
Statistics
Matches: 223, Mismatches: 49, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
157 13 0.06
158 100 0.45
159 105 0.47
160 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCGCTCAG
CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCATGCTGCCGATCC
CGCTGCCACAACCCTCGGTCCGCTCAGA
Found at i:25893288 original size:26 final size:26
Alignment explanation
Indices: 25893247--25893299 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25893237 CTGATCCGAT
25893247 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
* *
25893273 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
25893299 C
1 C
25893300 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:25893631 original size:26 final size:26
Alignment explanation
Indices: 25893602--25893654 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25893592 CCGGTCCAAT
25893602 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
25893628 CTTAGACTAGGGATGAACTCCTTATG
1 CTTAGACTAGGGATGAACTCCGTATG
25893654 C
1 C
25893655 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:25897132 original size:159 final size:158
Alignment explanation
Indices: 25896800--25897240 Score: 485
Period size: 159 Copynumber: 2.8 Consensus size: 158
25896790 AGCTTCGAAT
* *
25896800 GCTTAGAAATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAG
* * * * *
25896865 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATGCACCCT-TGCGTGCTGTAGAT
66 CCGACCGGAGAGGCAGAATGCGCAAG-CCGGGATCGGCCCGAT-CCCCCTCTACGTGCTGCAGAT
*** * * * *
25896929 CCTGTTGCCATAAACCTCAGTTCGGTCTGA
129 CCCACTGCCAGAAACCTCAGGTCCGACTGA
* * * * *
25896959 TCTTAAAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCA
* * * * *
25897023 GCCGACCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTACGTTCTGCCGGT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCG-GGATCGGCCCGATCCCCCTCTACGTGCTGCAGAT
* ** *
25897088 CCCACTGCTAGAGCCCTC-GGTCCGACTGGG
129 CCCACTGCCAGAAACCTCAGGTCCGACT-GA
* * * * *
25897118 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAG
* *
25897183 CCGACCGGAGAGGTAGAATGCGCAAGCCGGAGATCGGCCCAATCCCCC-CTACGTGCTG
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGG-GATCGGCCCGATCCCCCTCTACGTGCTG
25897241 TCGATCCTGC
Statistics
Matches: 233, Mismatches: 43, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
158 24 0.10
159 208 0.89
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGATCGGCCCGATCCCCCTCTACGTGCTGCAGATCC
CACTGCCAGAAACCTCAGGTCCGACTGA
Found at i:25897674 original size:26 final size:26
Alignment explanation
Indices: 25897645--25897697 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25897635 CTGGTCTGAT
25897645 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCTGTATG
*
25897671 CTTAGACTAGGGATGAACTTTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
25897697 C
1 C
25897698 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATG
Found at i:25898729 original size:26 final size:26
Alignment explanation
Indices: 25898700--25898751 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
25898690 CGGTCTGATT
25898700 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
25898726 TTAGGCTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
25898752 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:25898990 original size:355 final size:355
Alignment explanation
Indices: 25898330--25898994 Score: 901
Period size: 355 Copynumber: 1.8 Consensus size: 355
25898320 CGGTCCAGTT
*
25898330 TGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCA
1 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCA
* * *
25898395 ACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCTGAGAGGCAGGCCGGAGAGGCATAATGTGT
66 ACCCACGAAACGAGCGTACGGGCGCTCAGTCAGCCT----GGCA-----GAGAGGCATAATGTGC
* * ** * * *
25898460 AAGCTACGGATCAGCCTGGTCCCCGTCTGTATGCTGTTGATCCTGCTGTCGATACTGGCACTACC
122 AAGC-ACGGATCAGCCTCGTCCCCCTCTACATGCTGTCGATCCCGCTGCCGATACTGGCACTACC
* *
25898525 CTCGCTTTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAG
186 CTCGCTTTGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAG
* *
25898590 TGTGCAAGAGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATCAACCCGATCCCCCAT
251 CGTGCAAGAGCTCAGCCGGCCGGAGAGATAGAATGCGCAAGTCGGGGATCAACCCGATCCCCCAT
25898655 AGGTGCTGCCGATCCTGCTGTCACAACCCTCAATCCGGTC
316 AGGTGCTGCCGATCCTGCTGTCACAACCCTCAATCCGGTC
* * *
25898695 TGATTTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGGATGAACTCCGTATGCCTAAGTCA
1 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCA
* *
25898760 ACCCATGAAACGAGCGTACGGTCGCTCAGTCAG-CT-G-A-AGAGGCATAATGTGCAAGC-CGGC
66 ACCCACGAAACGAGCGTACGGGCGCTCAGTCAGCCTGGCAGAGAGGCATAATGTGCAAGCACGG-
* * *
25898820 AATCAGCCTCGTCCCCCTCTACGTGCTGTCGATCCCGGTGCCGAT-CTTGCTACCATAACCCTCG
130 -ATCAGCCTCGTCCCCCTCTACATGCTGTCGATCCCGCTGCCGATACTGGC-A-C-T-ACCCTCG
*
25898884 GTTTGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG
190 CTTTGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG
* * *
25898949 CAGGCGCTCAGCCGGTCGGAGAGATAGAATGCGCAAGTCGGGGATC
255 CAAGAGCTCAGCCGGCCGGAGAGATAGAATGCGCAAGTCGGGGATC
25898995 GGCACGGTCC
Statistics
Matches: 267, Mismatches: 27, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
350 3 0.01
351 4 0.01
352 54 0.20
353 1 0.00
354 1 0.00
355 110 0.41
358 1 0.00
359 1 0.00
364 2 0.01
365 90 0.34
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (355 bp):
TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTACGGGCGCTCAGTCAGCCTGGCAGAGAGGCATAATGTGCAAGCACGGA
TCAGCCTCGTCCCCCTCTACATGCTGTCGATCCCGCTGCCGATACTGGCACTACCCTCGCTTTGA
CTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGAG
CTCAGCCGGCCGGAGAGATAGAATGCGCAAGTCGGGGATCAACCCGATCCCCCATAGGTGCTGCC
GATCCTGCTGTCACAACCCTCAATCCGGTC
Found at i:25899189 original size:158 final size:158
Alignment explanation
Indices: 25898895--25899204 Score: 408
Period size: 158 Copynumber: 2.0 Consensus size: 158
25898885 TTTGACTGGG
* * *
25898895 GCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGAAGTGGAATGTACTCCGTATACCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAG
* * * * * *
25898960 CCGGTCGGAGAGATAGAATGCGCAAGTCGGGGATCGGCACGGTCCCCCCTGCGTGCTATCGATCT
66 CCGGCCGGAGAGACAGAATGCGCAAGTCGGGGATCAGCACGGTCCCCCCTGCGTGCTACCCATCC
* *
25899025 TGCTGTCGTAACCCTCGATCCGGTTAGT
131 TACTGTCGCAACCCTCGATCCGGTTAGT
* * *
25899053 GCTTAGAAGTGGAATGTACTCCGTATACCTAAGCCAACCCATGAAACAAGCTTGCGGGCGCTCAG
1 GCTTAGAAGTGGAATGTACTCCGTATACCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAG
* * ** *
25899118 CTGGCCGGAGAGGCAGAATGCGCAAG-CTGGGGATCAGTTCGG-CCCCTCCTGCGTGCTGCCCAT
66 CCGGCCGGAGAGACAGAATGCGCAAGTC-GGGGATCAGCACGGTCCCC-CCTGCGTGCTACCCAT
*
25899181 CCTACTGTCGCAACCTTCGATCCG
129 CCTACTGTCGCAACCCTCGATCCG
25899205 ATCTGATCTT
Statistics
Matches: 130, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
157 5 0.04
158 125 0.96
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGAAGTGGAATGTACTCCGTATACCTAAGCCAACCCACGAAACAAGCGTGCAGGCGCTCAG
CCGGCCGGAGAGACAGAATGCGCAAGTCGGGGATCAGCACGGTCCCCCCTGCGTGCTACCCATCC
TACTGTCGCAACCCTCGATCCGGTTAGT
Found at i:25899614 original size:26 final size:26
Alignment explanation
Indices: 25899578--25899628 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
25899568 CTGGTTTGAT
25899578 CTTAGACTGGGAATGAACTCCATATA
1 CTTAGACTGGGAATGAACTCCATATA
*
25899604 CTTAGACTGGGGATGAACTCCATAT
1 CTTAGACTGGGAATGAACTCCATAT
25899629 GCCTATGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATA
Found at i:25900867 original size:26 final size:26
Alignment explanation
Indices: 25900826--25900876 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25900816 AATCTGATCG
25900826 TAGACTGGGAACGAACTCCGTATGCT
1 TAGACTGGGAACGAACTCCGTATGCT
* *
25900852 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAACGAACTCCGTATGC
25900877 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAACGAACTCCGTATGCT
Found at i:25901199 original size:26 final size:26
Alignment explanation
Indices: 25901170--25901219 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
25901160 GTCTGATCTG
25901170 AGACTGGGAATGAA-TTCTGTATGCTT
1 AGACTGGGAATGAACTTC-GTATGCTT
*
25901196 AGACTGGGGATGAACTTCGTATGC
1 AGACTGGGAATGAACTTCGTATGC
25901220 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (26 bp):
AGACTGGGAATGAACTTCGTATGCTT
Found at i:25903102 original size:26 final size:26
Alignment explanation
Indices: 25903073--25903125 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25903063 CCGATCCGAT
*
25903073 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25903099 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25903125 C
1 C
25903126 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25903481 original size:26 final size:26
Alignment explanation
Indices: 25903440--25903492 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
25903430 CCGATCTGAT
25903440 CTTAGACTGGGAATGAAC-CCCGTATG
1 CTTAGACTGGGAATGAACTCCC-TATG
25903466 CTTAGACTAGGG-ATGAACTCCCTATG
1 CTTAGACT-GGGAATGAACTCCCTATG
25903492 C
1 C
25903493 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:25903650 original size:185 final size:184
Alignment explanation
Indices: 25903298--25903651 Score: 451
Period size: 184 Copynumber: 1.9 Consensus size: 184
25903288 CGTGGAATTT
* * *
25903298 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCTACCGACCAGAGAGGCAGA
1 ACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCTACCGACCAGAGAGGCAGA
* * * * *
25903363 ATGCATAAGTCGAGGATCGGCCCGATCCCTCCTGCGTGCTACCGATCCTGCTACTGCAACCCTTA
66 ATGCATAAGTAGAGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTGCTACCGCAACCCTCA
* *
25903428 ATCCGATCTGATCTTAGACTGGGAATGAACCCCGTATGCTTAGACTAGGGATGA
131 ATCCGATCTGATCTTAGACTAGGAATGAAACCCGTATGCTTAGACTAGGGATGA
* * * *
25903482 ACTCCCTATGCCTAAGCCAACTCACAAAATGAGCGTGCGGGCGCTC-AGCCTACCGGAGAGGCAG
1 ACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCTA-CCGACCAGAGAGGCAG
* * * * * * *
25903546 AATGCGTAAGCTAG-GGATTGACCTGATCCCCCCCTGCGTGCTATCGATCCTGTTGCCGTAACCC
65 AATGCATAAG-TAGAGGATCGACCCGAT-CCCCCCTGCGTGCTACCGATCCTGCTACCGCAACCC
** *
25903610 TCGGTCCGATCTGATCTTAGACTAGGAATGAAATCCGTATGC
128 TCAATCCGATCTGATCTTAGACTAGGAATGAAACCCGTATGC
25903652 ATAAGTCAAC
Statistics
Matches: 143, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
183 1 0.01
184 74 0.52
185 68 0.48
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (184 bp):
ACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCTACCGACCAGAGAGGCAGA
ATGCATAAGTAGAGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTGCTACCGCAACCCTCA
ATCCGATCTGATCTTAGACTAGGAATGAAACCCGTATGCTTAGACTAGGGATGA
Found at i:25903992 original size:26 final size:26
Alignment explanation
Indices: 25903941--25903993 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25903931 CCGGTGTGAT
* *
25903941 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
25903967 CTTAGACTGGGGATAAACTCTATATG
1 CTTAGACTGGGAATAAACTCCATATG
25903993 C
1 C
25903994 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:25904605 original size:341 final size:341
Alignment explanation
Indices: 25903967--25904675 Score: 818
Period size: 341 Copynumber: 2.1 Consensus size: 341
25903957 ACTCCGTATG
* ** *
25903967 CTTAGACTGGGGATAAACTCTATATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAGC
* * * * * *
25904032 CAGTCAGAGAGGCCGATCGAAGAGGGATAATGCGTAAGCCGAGGATCAGTCCGATCCCCCTCTAC
66 CAGCCAGAGAGGCCAATCGAAGAGGCATAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTAC
* * * * * *
25904097 GTGCTGCCGATCTCGCTGCCAGTCCTACTGCCATAACCCTCAATCCGGCTGGGGCTTAGACATGG
131 GTGCTGCCGATCCCACTACCAGTCCTACTGCCACAACCCTCAATCCGACTAGGGCTTAGACATGG
* * * * * * * *
25904162 AATGTACTCCGTATGCCTAAGCCAATCCATGAAACATGCGTGCAGGCGCTCAGTCGGTCGGAGAG
196 AATGCACTCCGTATGCCTAAGCCAACCCACGAAACATGCGTACAGGCGCTCAGTCAGCCGAAAAG
* * * * *
25904227 GTAGAATGCCCAAGTCAGGGATCAGTCTGGTCCCCCTGCGTGCTATCGATCCTGTTGCCGCAACC
261 GTAGAATGCCCAAGCCAGGGATCACTCTGGTCCCCCTGCGTGCTACCGATCCTGCTACCGCAACC
* *
25904292 CTTGATCCAGTTTGAT
326 CTCGATCCAGTCTGAT
* * * *
25904308 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAG-
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAGC
* * *
25904372 CTGACCGGAGAGGCCAATCGAAGAGGCATAATGCGCAAGCCAAGGATCAGCCCGATCCCCTTCTA
66 CAG-CCAGAGAGGCCAATCGAAGAGGCATAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTA
** * *** * *
25904437 CGTGCTGTTGATCCCACTACC-GATCCTACTGCCACAACCTTTGGTCTGACTAGGG-TTAGACGT
130 CGTGCTGCCGATCCCACTACCAG-TCCTACTGCCACAACCCTCAATCCGACTAGGGCTTAGACAT
*
25904500 GGAATGCACTCCGTATGCCTAAGCCAACCCACGAAA-A-GAACGTACAGGTGCTCAGTCAGCCGA
194 GGAATGCACTCCGTATGCCTAAGCCAACCCACGAAACATG--CGTACAGGCGCTCAGTCAGCCGA
** * * **
25904563 AAAGGTAGAATGTGCAAGCCAGGGATCGACTC-GGTCCCCCCTGCGTGTTGCCGATCCTGCTATT
257 AAAGGTAGAATGCCCAAGCCAGGGATC-ACTCTGGT-CCCCCTGCGTGCTACCGATCCTGCTACC
*
25904627 GCAACCCTCGATCCGGTCTGAT
320 GCAACCCTCGATCCAGTCTGAT
* *
25904649 CTTAGATTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGGATGAACTCCGTATGC
25904676 TTAGAATAGG
Statistics
Matches: 306, Mismatches: 56, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
338 1 0.00
339 1 0.00
340 87 0.28
341 217 0.71
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (341 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAGC
CAGCCAGAGAGGCCAATCGAAGAGGCATAATGCGCAAGCCAAGGATCAGCCCGATCCCCCTCTAC
GTGCTGCCGATCCCACTACCAGTCCTACTGCCACAACCCTCAATCCGACTAGGGCTTAGACATGG
AATGCACTCCGTATGCCTAAGCCAACCCACGAAACATGCGTACAGGCGCTCAGTCAGCCGAAAAG
GTAGAATGCCCAAGCCAGGGATCACTCTGGTCCCCCTGCGTGCTACCGATCCTGCTACCGCAACC
CTCGATCCAGTCTGAT
Found at i:25905556 original size:26 final size:26
Alignment explanation
Indices: 25905520--25905572 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25905510 CCGGTCTAAT
*
25905520 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25905546 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25905572 C
1 C
25905573 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25905991 original size:368 final size:368
Alignment explanation
Indices: 25905297--25905971 Score: 978
Period size: 368 Copynumber: 1.8 Consensus size: 368
25905287 AGGCTCCTGG
* * * * *
25905297 TCCCCCTCTGCGTGCTGTCGATCCCGCTGCTGGTCCTGTTGCCACAACCCTCGGTCCGGCTGGGG
1 TCCCCCTCTACGTGCTGTCAATCCCGCTGCTGGTCCTGTTACCACAACCCTCGGTCCGACTGAGG
* * * *
25905362 CTTAGAGATGGAATGTACTCCTTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGC
66 CTTAGAGATGGAATATACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAAC
** * * * *
25905427 CGACCGGAGAGGCAAAATGTGCAAGCTTGGGATCAGCTCGGTCCCCCCTACGTGCTGTCGATCCT
131 CGACCGGAGAGGCAAAATGCACAAGATCGGAATCAGCTCGGTCCCCCCTACGTGCTGCCGATCCT
* * *
25905492 GCTACCGCAACTCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGG
196 GCTACCGCAACCCTCGATCCAGTCTAATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGG
* ** ** * *
25905557 GATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACCCAGTCAGTCGGAGAG
261 GATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACCCAACCACTCAGAGAG
25905622 GCCAGTCGGAAAGGCATAATGCGCAAGCCGGGGATCAGCCCGA
326 GCCAGTCGGAAAGGCATAATGCGCAAGCCGGGGATCAGCCCGA
* *
25905665 TCCCCCTCTACGTGCTGTCAATCCTGCTGCTGGTCCTGTTACCACAACCCTCTGTCCGACTGAGG
1 TCCCCCTCTACGTGCTGTCAATCCCGCTGCTGGTCCTGTTACCACAACCCTCGGTCCGACTGAGG
* **
25905730 CTTAGACG-TGGAATATACTACGTATGCCTAAGCCAACCCACGGAACGAGCGTGTGGGCACTCAA
66 CTTAGA-GATGGAATATACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAA
* * * *
25905794 CCGGCCGGAGAGGCAGAATGCACAA-ATCGAGAATC-GGTCCGGTCCCCCTTACGTGCTGCCGAT
130 CCGACCGGAGAGGCAAAATGCACAAGATCG-GAATCAGCT-CGGTCCCCCCTACGTGCTGCCGAT
* *
25905857 CCTGCTACCGCAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTTTGTATGCTTAGACT
193 CCTGCTACCGCAACCCTCGATCCAGTCTAATCTTAGACTAGGAATGAACTCTGTATGCTTAGACT
25905922 GGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGC
258 GGGGATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGC
25905972 GCTTAACCGA
Statistics
Matches: 272, Mismatches: 32, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
367 4 0.01
368 267 0.98
369 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (368 bp):
TCCCCCTCTACGTGCTGTCAATCCCGCTGCTGGTCCTGTTACCACAACCCTCGGTCCGACTGAGG
CTTAGAGATGGAATATACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAAC
CGACCGGAGAGGCAAAATGCACAAGATCGGAATCAGCTCGGTCCCCCCTACGTGCTGCCGATCCT
GCTACCGCAACCCTCGATCCAGTCTAATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGG
GATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACCCAACCACTCAGAGAG
GCCAGTCGGAAAGGCATAATGCGCAAGCCGGGGATCAGCCCGA
Found at i:25907166 original size:25 final size:26
Alignment explanation
Indices: 25907132--25907183 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25907122 CTGGTCTGAT
25907132 CTTAGACT-GGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
* *
25907157 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
25907183 C
1 C
25907184 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:25907534 original size:26 final size:26
Alignment explanation
Indices: 25907498--25907550 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25907488 TCGGCCCGAT
25907498 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
** *
25907524 CTTAGACTGGGGTTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25907550 C
1 C
25907551 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25907677 original size:367 final size:367
Alignment explanation
Indices: 25906950--25909398 Score: 1891
Period size: 367 Copynumber: 6.8 Consensus size: 367
25906940 GGTTTCGCTA
** * *
25906950 CCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCA
1 CCACAACCCTCGATCCGACTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAACCCA
* * * * * * * *
25907014 CAAAATGGGA-GTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGCATCGGCCT
65 CGAAA-CGAACGTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC
* * * * * *
25907078 GGTCCCCCCTGCGTGCT-GTCGATCTTACTACCGCAATCCTCGATCTGG-TCTGATCTTAGACT-
129 GATCCCCCCTGCGTGCTACT-GATCCTGCTACCGCAAACCTCGATCCGGTTC-GATCTTAGACTG
* *
25907140 GGAATGAACTTCATATGCTTAGACTGGGGATGAACT-TCGTATGCCTAAGTCAACCCACGAAACG
192 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCT-GTATGCCTAAGTCAACCCACGAAACG
* * * ** *
25907204 AGCGTGCGGGCGCTTAGCCGACCGGAGAGGCCGATCGGAGAGGCATAATTTGCAAGCCGGGGTCA
256 AGCATGCGGGCGCTCAGCCGATCGGAGAGGCCGATCGGAGAGGCATAATACGCAAGCCGGGATCA
*** * * * *
25907269 GTTTGGTCACCTTCTGCGTGCTGCCGATCCCGTCT-CCGGTCCTGCTG
321 GCCCGGTCCCCTTCTACATGCTGTCGATCCCG-CTGCCGGTCCTGCTG
* * * * * *
25907316 CCATAACCCTTGATCCGGCTGGGGCTTAAATGTGGAATGTACTCTGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGATCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
** * * * *
25907381 GAAACGAACGTGCGGGCGCTCAGCTGATCGGAGAGGGAGAATGCGTAAGCCGAGGATCGACCCGG
66 GAAACGAACGTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA
* * * ** * * * * * * **
25907446 TCCACCTTACGAACCATTGATCCTGCTATCGCAAAACTCAATTCGGCCCGATCTTAGACTGGGAA
131 TCCCCCCTGCGTGCTACTGATCCTGCTACCGCAAACCTCGATCCGGTTCGATCTTAGACTGGGAA
* *
25907511 TGAACTCCGTATGCTTAGACTGGGGTTGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCAT
196 TGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCAT
* * *
25907576 GAGGGCGCTCAGCC-AGTCGGAGAGGCCGATCGGAGAGGTATAATACGTAAGCCGAGGATCAGCC
261 GCGGGCGCTCAGCCGA-TCGGAGAGGCCGATCGGAGAGGCATAATACGCAAGCCG-GGATCAGCC
* *
25907640 CGGTCCCCTTCTACATGCTATCGAT-CCGCTGCCGGTCCTGTTG
324 CGGTCCCCTTCTACATGCTGTCGATCCCGCTGCCGGTCCTGCTG
* * * *
25907683 CCACAACCCTCGGTCCGACTGGGCCTTAGACG-GGAAATTTACTCTGTATGCCTAAGCCAACCCA
1 CCACAACCCTCGATCCGACTGGGGCTTAGACGTGG-AATGTACTCCGTATGCCTAAGCCAACCCA
* * * * * * * *
25907747 CGAAACGAACGTGCAGGCACTCTG-TCGGCCAGAAAGGCAGAATGCACAAGCTGGGGATCGACCT
65 CGAAACGAACGTGCGGGCGCTCAGCT-GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC
* * * * *
25907811 GATCCCCCCTGCGTGCTGCTGATCCTGCTGCCAC-AACCTTCGATCCGATTTGATCTTAGACTGG
129 GATCCCCCCTGCGTGCTACTGATCCTGCTACCGCAAACC-TCGATCCGGTTCGATCTTAGACTGG
* * * *
25907875 GAATGAACTCC-TAAAGCTTAGACTGGGGATGAACTCCGTATGCTTAAGTCAACCCA-TAAAGCG
193 GAATGAACTCCGT-ATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAA-CG
* * * * * *
25907938 AGCATGTGGGTGCTCA---G-TC-----GG-C---CGGATAGGCATAATCCACAAGTC-GGATTT
256 AGCATGCGGGCGCTCAGCCGATCGGAGAGGCCGATCGGAGAGGCATAATACGCAAGCCGGGA--T
* * * * * *
25907989 CAACCCGATCCCCCTCTACATGCTGTCGATCCTGTTACCGGTCCTGCTG
319 CAGCCCGGTCCCCTTCTACATGCTGTCGATCCCGCTGCCGGTCCTGCTG
* * *
25908038 CCACAACCCTC-AGTCTGATTGGGGCTTAGACGGGGAATGTACTCCGTATGCCTAAGCCAACCCA
1 CCACAACCCTCGA-TCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCA
** * * *
25908102 TAAAACGAACGTGCGGGTGCTCAGCTGGCCGGAGAGGCTGAATGTGCAAGCCGGGGATC-AGCCC
65 CGAAACGAACGTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCC
* * * * * * *
25908166 GATCCCCCCTGTGTGCTACCGATCCTGCTACCGTAACCCTTGATCCGGTTCGATCTTAGACTAGA
129 GATCCCCCCTGCGTGCTACTGATCCTGCTACCGCAAACCTCGATCCGGTTCGATCTTAGACTGGG
* * * *
25908231 AATGAACTTCGTATGCATACACTGAGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
194 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * * *
25908296 GTGCGAGTGCTCAGCCGATCGGGGAGGCCGATCAGAGAGGCATAATGCGTAAGCTGGGGATCAGC
259 ATGCGGGCGCTCAGCCGATCGGAGAGGCCGATCGGAGAGGCATAATACGCAAGC-CGGGATCAGC
* * * * *
25908361 CCGTTCCCCCTT-TGCATGCTGTCGATCCCGCTGTCGATGCTGCTG
323 CCGGT-CCCCTTCTACATGCTGTCGATCCCGCTGCCGGTCCTGCTG
* ** *
25908406 CCACAACCCTCGGTCCGGTTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGATCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
* * * * * * * * * * **
25908471 TAAATGAGCGTACGTGG-GATTAG-TCGACCGGAGAGGCAAAATGTGCAAGCCAGGGATCGAGTC
66 GAAACGAACGTGCG-GGCGCTCAGCT-GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC
* * *
25908534 GATCCCCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCGATCCGG-TC---C----A----G
129 GATCCCCCCTGCGTGCTACTGATCCTGCTACCGCAAACCTCGATCCGGTTCGATCTTAGACTGGG
* * * * *
25908587 --T---CT---TA-G---AG--TTGGAATGAACTCCGTATGCCTAGGTCAACGCACGAAACGAGC
194 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * * * * *
25908638 GTGCGGGCGCTCAGTCGACCGAAGAGGTCGGTCGAAGAGGCATAATGCGCTAGTCGAGGATCAGC
259 ATGCGGGCGCTCAGCCGATCGGAGAGGCCGATCGGAGAGGCATAATACGCAAGCCG-GGATCAGC
* * * * * * * * *
25908703 CTGATCCCCCTT-TGCATGCTATCAATCTCACTGCCGGTCTTGCTT
323 CCGGT-CCCCTTCTACATGCTGTCGATCCCGCTGCCGGTCCTGCTG
* * * * * * * *
25908748 CTACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCAAT
1 CCACAACCCTCGATCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
* * * * * ** ** *
25908813 TAAACGAGA-GTGCGGGCACTCAGCTGGCCAGAGAGGCAGAATGCACAAGTC-GATATCGGTCTG
66 GAAACGA-ACGTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCG
* * * * * * * * * * * * *
25908876 GTCCCTCATACGTGCTGCCGATGCTACTACCGTAACCCTCGATCCGGTCCAATCTTAGACTAGGA
130 ATCCCCCCTGCGTGCTACTGATCCTGCTACCGCAAACCTCGATCCGGTTCGATCTTAGACTGGGA
* * *
25908941 ATGAACTCTGTA-ACTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCG
195 ATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCA
* * * * * * * * * *
25909005 TGCGAGCACTCAGTCGGT-TGAAAGGCCGA-CTGTAGAGGCATAATATGTAAGCCAGGGATCTGC
260 TGCGGGCGCTCAGCCGATCGGAGAGGCCGATC-GGAGAGGCATAATACGCAAGCC-GGGATCAGC
* * * * * * * * *
25909068 CCGATCCCCCTCTGCGTGCTATCGATCTCGTTGCCAGTCTTGCTG
323 CCGGTCCCCTTCTACATGCTGTCGATCCCGCTGCCGGTCCTGCTG
* * * * * * *
25909113 CCACAACCCTTGGTTCGATTGGGGCTTAGACATGGAATGTACCCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGATCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
** * * * * * * * * *
25909178 GAAACGAGTGTACGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGCCGGGCATCGGCTCGG
66 GAAACGAACGTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA
* * * * *
25909243 TCCCCCTTACGTGCT-GTCGATCCTGCTACCGCAACCCTCGATCCAG-TCTGATCTTAGACTGGG
131 TCCCCCCTGCGTGCTACT-GATCCTGCTACCGCAAACCTCGATCCGGTTC-GATCTTAGACTGGG
*
25909306 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
194 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
* * * *
25909371 ATGCAGGTGCTCAGCCGAGCAGAGAGGC
259 ATGCGGGCGCTCAGCCGATCGGAGAGGC
25909399 AAGATGCGCA
Statistics
Matches: 1657, Mismatches: 343, Indels: 164
0.77 0.16 0.08
Matches are distributed among these distances:
341 47 0.03
342 213 0.13
343 1 0.00
344 1 0.00
345 1 0.00
347 1 0.00
348 2 0.00
349 1 0.00
351 2 0.00
352 3 0.00
353 1 0.00
354 46 0.03
355 226 0.14
356 10 0.01
357 1 0.00
358 5 0.00
359 2 0.00
360 1 0.00
361 2 0.00
363 2 0.00
364 11 0.01
365 161 0.10
366 280 0.17
367 396 0.24
368 230 0.14
369 8 0.00
370 3 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (367 bp):
CCACAACCCTCGATCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
GAAACGAACGTGCGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA
TCCCCCCTGCGTGCTACTGATCCTGCTACCGCAAACCTCGATCCGGTTCGATCTTAGACTGGGAA
TGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCAT
GCGGGCGCTCAGCCGATCGGAGAGGCCGATCGGAGAGGCATAATACGCAAGCCGGGATCAGCCCG
GTCCCCTTCTACATGCTGTCGATCCCGCTGCCGGTCCTGCTG
Found at i:25908969 original size:25 final size:25
Alignment explanation
Indices: 25908929--25908977 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
25908919 CCGGTCCAAT
25908929 CTTAGACTAGGAATGAACTCTGTAA
1 CTTAGACTAGGAATGAACTCTGTAA
* *
25908954 CTTAGACTGGGGATGAACTCTGTA
1 CTTAGACTAGGAATGAACTCTGTA
25908978 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (25 bp):
CTTAGACTAGGAATGAACTCTGTAA
Found at i:25909331 original size:26 final size:26
Alignment explanation
Indices: 25909295--25909347 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25909285 CCAGTCTGAT
25909295 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25909321 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25909347 C
1 C
25909348 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25910178 original size:69 final size:69
Alignment explanation
Indices: 25910059--25910190 Score: 201
Period size: 69 Copynumber: 1.9 Consensus size: 69
25910049 CATCGAATGC
* * *
25910059 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAACCGAAGAGGCAGA
1 ACTCAGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCCCTCAGCCAACCGAAGAGGCAGA
25910124 ATTA
66 ATTA
* * * *
25910128 ACTCAGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCCCTGAGCCAGCCGAAGAGGCA
1 ACTCAGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCCCTCAGCCAACCGAAGAGGCA
25910191 TAATGCGCAA
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
69 56 1.00
ACGTcount: A:0.31, C:0.31, G:0.27, T:0.11
Consensus pattern (69 bp):
ACTCAGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCCCTCAGCCAACCGAAGAGGCAGA
ATTA
Found at i:25910475 original size:25 final size:25
Alignment explanation
Indices: 25910429--25910506 Score: 138
Period size: 26 Copynumber: 3.0 Consensus size: 25
25910419 CCGGTCTGAT
25910429 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
25910455 CTTAGACTGGGATGAACTCCGTATG
1 CTTAGACTGGGATGAACTCCGTATG
25910480 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
25910506 C
1 C
25910507 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
25 22 0.43
26 29 0.57
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:25910609 original size:21 final size:24
Alignment explanation
Indices: 25910583--25910630 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
25910573 AGGATCAGCT
*
25910583 CAATCCC-CT-TCAG-CGTGCTGC
1 CAATCCCGCTGTCAGTCCTGCTGC
25910604 CAATCCCGCTGTCAGTCCTGCTGC
1 CAATCCCGCTGTCAGTCCTGCTGC
25910628 CAA
1 CAA
25910631 AACCCTCGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 7 0.30
22 2 0.09
23 4 0.17
24 10 0.43
ACGTcount: A:0.17, C:0.42, G:0.19, T:0.23
Consensus pattern (24 bp):
CAATCCCGCTGTCAGTCCTGCTGC
Found at i:25910845 original size:26 final size:26
Alignment explanation
Indices: 25910809--25910861 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25910799 CTGGTTTAAT
25910809 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
* * *
25910835 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
25910861 C
1 C
25910862 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:25911333 original size:21 final size:21
Alignment explanation
Indices: 25911292--25911333 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
25911282 GGGATCAGCC
* *
25911292 CGATCCCCTTCTGCGTGCTGT
1 CGATCCCCTGCTGCGTCCTGT
25911313 CGATCCCACTGCTG-GTCCTGT
1 CGATCCC-CTGCTGCGTCCTGT
25911334 TGCCATAACC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.07, C:0.38, G:0.24, T:0.31
Consensus pattern (21 bp):
CGATCCCCTGCTGCGTCCTGT
Found at i:25911553 original size:26 final size:26
Alignment explanation
Indices: 25911517--25911568 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
25911507 TCTGGTCTGA
25911517 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
25911543 TCTTAGACTGGGGATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
25911569 GCCTAAATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:25913785 original size:159 final size:156
Alignment explanation
Indices: 25913505--25913991 Score: 483
Period size: 159 Copynumber: 3.1 Consensus size: 156
25913495 GCTTAGACAT
* ** *
25913505 GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCATTCAGCCGGCTGGAG
1 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * * ** *
25913570 AGGCAGAATGCGCAAGCCGGGGATT-GACTCGGTCCCCCCCTGCGTACTGTCGATCCTACTGCCA
66 AGGCAGAATGTGCAAGCCGAGGATTGGCCT-GGT-CCCCCCTGCGTACTACCGATCCTGCTGCCA
25913634 CAACCTTCGGTCCAGTCTGATCTTAGATGG
129 CAACCTTCGGTCC-GTCTGATCTTAGAT-G
* * * * * * *
25913664 GGAATGAACTCTGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAACCGGCCGAAG
1 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * * * * *
25913729 AGGCATAATGTGCAAGCCGAGGATTGGCCTAGTCCCCTTCTGCATGCTACCGATCCTGCTACCAC
66 AGGCAGAATGTGCAAGCCGAGGATTGGCCTGGTCCCC-CCTGCGTACTACCGATCCTGCTGCCAC
* * **
25913794 AACCCTCGGTCCGACTGGGGCTTAGACAT-
130 AACCTTCGGTCCGTCT-GATCTTAG--ATG
* ** * * *
25913823 GGAACGAACTCCCTATGCCTAAGCCAACCTACGAAACGAGCGTGCAGGCGCTCAGCCGGCCGGAG
1 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * * * * ***
25913888 AGGCAGAATGTGCAAGTCGAAGATCGACCTGGTCCCCCCTGCGTTCTACCGATCCTGCTGTGGCA
66 AGGCAGAATGTGCAAGCCGAGGATTGGCCTGGTCCCCCCTGCGTACTACCGATCCTGCTGCCACA
*
25913953 ACCTTCGGTCCGATCCGATCTTAGACTG
131 ACCTTCGGTCCG-TCTGATCTTAGA-TG
*
25913981 GGAATGTACTC
1 GGAATGAACTC
25913992 CATATGCTTA
Statistics
Matches: 260, Mismatches: 60, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
156 1 0.00
157 1 0.00
158 54 0.21
159 199 0.77
160 3 0.01
161 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAG
AGGCAGAATGTGCAAGCCGAGGATTGGCCTGGTCCCCCCTGCGTACTACCGATCCTGCTGCCACA
ACCTTCGGTCCGTCTGATCTTAGATG
Found at i:25914008 original size:26 final size:26
Alignment explanation
Indices: 25913972--25914024 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25913962 CCGATCCGAT
*
25913972 CTTAGACTGGGAATGTACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
25913998 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25914024 C
1 C
25914025 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25914367 original size:26 final size:26
Alignment explanation
Indices: 25914338--25914390 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25914328 CCGATTCGAT
25914338 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25914364 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25914390 C
1 C
25914391 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25915514 original size:159 final size:157
Alignment explanation
Indices: 25915086--25915516 Score: 411
Period size: 159 Copynumber: 2.7 Consensus size: 157
25915076 AGTTTCGTAT
* *
25915086 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** * * * *
25915151 CCGGCCAGAGAGGCAGAATGTGCAAGCCAGGGATCGACCAGGTCCCCCCCTTCATGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCACAAG-CTGGGATCGACC-GATCCCCCCCTGCATGCTGCCGATC
* * * * *
25915216 CTGCTGCCGCAACCCTTGGTCTGGTCCGA
129 CCGCTGCCGCAACCCTCGGCCCGCTCCGA
* * * * * *
25915245 TCTTAGAC-TGGGAAAGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * *
25915309 GCCGACCGAAGAGGCATAATGCATAAGCTGCGGATCGACCCAATCCCCCTCTGCATGCTGCC-AG
65 GCCGGCCGGAGAGGCAGAATGCACAAGCTG-GGATCGA-CCGATCCCCCCCTGCATGCTGCCGA-
* *
25915373 TCCCGCTGCCAG-AACCCTCGGCCCGACT-GGG
127 TCCCGCTGCC-GCAACCCTCGGCCCG-CTCCGA
* * * * * *
25915404 GCTTAGACATGGAATGAGCTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
25915469 CCGGCCGGAGAAGTAGAATGCACAAGCTTGGGATCGGCTCGATCCCCC
66 CCGGCCGGAGAGGCAGAATGCACAAGC-TGGGATCGAC-CGATCCCCC
25915517 ATATGTGCTA
Statistics
Matches: 216, Mismatches: 47, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
158 5 0.02
159 204 0.94
160 7 0.03
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCACAAGCTGGGATCGACCGATCCCCCCCTGCATGCTGCCGATCCC
GCTGCCGCAACCCTCGGCCCGCTCCGA
Found at i:25915967 original size:26 final size:26
Alignment explanation
Indices: 25915931--25915983 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25915921 CCGATCCGAT
*
25915931 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
25915957 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
25915983 C
1 C
25915984 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:25916587 original size:10 final size:11
Alignment explanation
Indices: 25916560--25916600 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
25916550 GCATCTCTAG
25916560 CGATGCTCCGA
1 CGATGCTCCGA
25916571 CGATGCTCCGA
1 CGATGCTCCGA
25916582 -GATGCT-CGA
1 CGATGCTCCGA
*
25916591 TGATGCTCCG
1 CGATGCTCCG
25916601 GTGTATGGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 3 0.11
10 12 0.43
11 13 0.46
ACGTcount: A:0.17, C:0.32, G:0.29, T:0.22
Consensus pattern (11 bp):
CGATGCTCCGA
Found at i:25916597 original size:20 final size:21
Alignment explanation
Indices: 25916561--25916600 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
25916551 CATCTCTAGC
25916561 GATGCTCCGACGATGCTCCGA
1 GATGCTCCGACGATGCTCCGA
*
25916582 GATGCT-CGATGATGCTCCG
1 GATGCTCCGACGATGCTCCG
25916601 GTGTATGGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (21 bp):
GATGCTCCGACGATGCTCCGA
Found at i:25922900 original size:26 final size:26
Alignment explanation
Indices: 25922864--25922916 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25922854 CCGGTCTGAT
25922864 CTTAGACTGGGAATGAACACCGCATG
1 CTTAGACTGGGAATGAACACCGCATG
* * *
25922890 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGCATG
25922916 C
1 C
25922917 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGCATG
Found at i:25923251 original size:26 final size:26
Alignment explanation
Indices: 25923222--25923274 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25923212 CCGGTTCGAT
*
25923222 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
**
25923248 CTTAGACTAGCGATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
25923274 C
1 C
25923275 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:25924719 original size:26 final size:26
Alignment explanation
Indices: 25924690--25924742 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25924680 CTGGTCCGAT
25924690 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25924716 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25924742 C
1 C
25924743 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25925991 original size:26 final size:26
Alignment explanation
Indices: 25925951--25926002 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25925941 TGGTCTGACT
* *
25925951 TTAGATTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
25925977 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
25926003 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:25926176 original size:26 final size:26
Alignment explanation
Indices: 25926147--25926199 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25926137 CTGGTCCGAT
*
25926147 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
25926173 CTTAGACTAGGCATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25926199 C
1 C
25926200 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25926286 original size:197 final size:198
Alignment explanation
Indices: 25925951--25926315 Score: 475
Period size: 197 Copynumber: 1.8 Consensus size: 198
25925941 TGGTCTGACT
* * * *
25925951 TTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGCATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * *
25926016 TGGAACGATCGTGCGGGCACTCAGTCGGTCGGAGAGGCCGACCAAAGAGGCATAATGCACGAGCC
66 TGAAACGAGCGTACAGGCACTCAGCCGCTCAGAGAGGCCGACCAAAGAGGCATAATGCACAAGCC
*
25926081 AGGGATCAACCCGATCCCCC-CTGTGTGCTATCGATCCTGCTACCATAACCCTCGATCTGGTCCG
131 AGGGATCAACCCGATCCCCCTCTGCGTGCTATCGATCCTGCTACCATAACCCTCGATCTGGTCCG
25926145 ATC
196 ATC
*
25926148 TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGCATGAACTCCGTATGCCTAAGTGAACCCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGCATGAACTCCGTATGCCTAAGTCAACCCA
* ** * * *
25926213 TGAAACGAGCGTACAGGCACTCAGCCGACT-AGAGAGGCCGATCGGAGTGGCATAATGCGCAAGT
66 TGAAACGAGCGTACAGGCACTCAGCCG-CTCAGAGAGGCCGACCAAAGAGGCATAATGCACAAGC
** * *
25926277 C-GAGGATCAACTTGGTCCCCCTCTGCGTGCTGTCGATCC
130 CAG-GGATCAACCCGATCCCCCTCTGCGTGCTATCGATCC
25926316 CGCTGTCGGT
Statistics
Matches: 141, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
196 1 0.01
197 124 0.88
198 16 0.11
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (198 bp):
TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGCATGAACTCCGTATGCCTAAGTCAACCCA
TGAAACGAGCGTACAGGCACTCAGCCGCTCAGAGAGGCCGACCAAAGAGGCATAATGCACAAGCC
AGGGATCAACCCGATCCCCCTCTGCGTGCTATCGATCCTGCTACCATAACCCTCGATCTGGTCCG
ATC
Found at i:25926511 original size:26 final size:26
Alignment explanation
Indices: 25926482--25926534 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25926472 CCTGTCCGAT
25926482 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
25926508 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
25926534 C
1 C
25926535 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:25926669 original size:335 final size:335
Alignment explanation
Indices: 25926052--25926714 Score: 845
Period size: 335 Copynumber: 2.0 Consensus size: 335
25926042 GGTCGGAGAG
* * *
25926052 GCCGACCAAAGAGGCATAATGCACGAGCCAGGGATCAACCCGATCCCCCCTGTGTGCTATCGATC
1 GCCGACCAAAGAGGCATAATGCACAAGCCAGGGATCAACCCGATCCCCCATGCGTGCTATCGATC
*
25926117 CTGCTACCATAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
66 CTGCTACCATAACCCTAGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
*
25926182 GGCATGAACTCCGTATGCCTAAGTGAACCCATGAAACGAGCGTACAGGCACTCAGCCGACTAGAG
131 GGCATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGCACTCAGCCGACTAGAG
* * * * ** * * *
25926247 AGGCCGATCGGAGTGGCATAATGCGCAAGTCGAGGATCAACTTGGTCCCCCTCTGCGTGCTGTCG
196 AGGCAGACCGGAGAGGCATAACGCGCAAGTCGAGGATCAACCCGATCCCCCTCTACGTGCTGTCA
* **
25926312 ATCCCGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGGCTAG-GGTTTAGACGTGGAATGTACT
261 ATCCCGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGACT-GTGACTTAGACGTGGAATGTACT
25926376 CCATGCGCTCA
325 CCATGCGCTCA
* * * ** *
25926387 GCCGACCAGAGAGGC-TGAATGCGCAAGCTAGGGATCGGCCC-AGTCCCCCATGCGTGCTGTCGA
1 GCCGACCAAAGAGGCAT-AATGCACAAGCCAGGGATCAACCCGA-TCCCCCATGCGTGCTATCGA
*
25926450 TCCTGCTACCGTAACCCTTAG-TCCT-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
64 TCCTGCTACCATAACCC-TAGAT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * ** * ** *
25926513 ACT-GGAGATGAACTCCGTATGCCTAAGTCAACCCGTGAAATGAGTTTACGGGCGTTCAGCCGGC
127 ACTAGG-CATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGCACTCAGCCGAC
* * * * *
25926577 TGGAGAGGCAGGCCGGAGAGGCATAACGTGCAAGTCGAGGATCAGCCCGATCCCCTTCTACGTGC
191 TAGAGAGGCAGACCGGAGAGGCATAACGCGCAAGTCGAGGATCAACCCGATCCCCCTCTACGTGC
** *
25926642 TGTCAATCCCGCTG-CTGGTTTTGCTACCACAACCCTCGGTCTGACTGTGACTTAGACGTGGAAT
256 TGTCAATCCCGCTGTC-GGTCCTGCTACCACAACCCTCGGTCCGACTGTGACTTAGACGTGGAAT
25926706 GTACTCCAT
320 GTACTCCAT
25926715 ATGCCCAAGC
Statistics
Matches: 280, Mismatches: 41, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
334 6 0.02
335 270 0.96
336 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (335 bp):
GCCGACCAAAGAGGCATAATGCACAAGCCAGGGATCAACCCGATCCCCCATGCGTGCTATCGATC
CTGCTACCATAACCCTAGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
GGCATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACAGGCACTCAGCCGACTAGAG
AGGCAGACCGGAGAGGCATAACGCGCAAGTCGAGGATCAACCCGATCCCCCTCTACGTGCTGTCA
ATCCCGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGACTGTGACTTAGACGTGGAATGTACTC
CATGCGCTCA
Found at i:25927080 original size:368 final size:363
Alignment explanation
Indices: 25926478--25927668 Score: 1382
Period size: 368 Copynumber: 3.2 Consensus size: 363
25926468 TAGTCCTGTC
*
25926478 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCA
1 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* * ** * * ** * *
25926543 ACCCGTGAAATGAGTTTACGGGCGTTCAGCCGGCTGGAGAGGCAGGCCGGAGAGGCATAACGTGC
66 ACCCATGAAACGAGCGTGCGGGCGCTCAGCC-TATGGAGAGGCAGGCCGGAGAGGCATAATGCGC
* * *
25926608 AAGTCGAGGATCAGCCCGATCCCCTTCTACGTGCTGTCAATCCCGCTGCTGGTTTTGCTACCACA
130 AAGCCG-GGATCAGCCCGATCCCCCTCTACGTGCTGTCAATCCCGCTGC-GGTCTTGCTACCACA
* * * * *
25926673 ACCCTCGGTCTGACTGTGACTTAGACGTGGAATGTACTCCATATGCCCAAGCCAACCCACGAAAT
193 ACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAAT
* * * * * *
25926738 GGGTGTGCGGGCACTCAGTCGGTCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCAGGCGCCC
258 GAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCGACC-GGC-CCC
* *
25926803 CCTACATGCTGTCAATCCTACTGTAGTAACCCTCGATCCGATT
321 CCTACATGCTGTCGATCCTACTGTAGCAACCCTCGATCCGATT
** *
25926846 TAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTCTGCCTAAGTCA
1 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* * * * *
25926911 ACTCATGAAACAAGCGTGCGGGCGCTCAGCCTATAGGAGAGGCCGGTCGGAGAGGCATAATGCAC
66 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCTAT-GGAGAGGCAGGCCGGAGAGGCATAATGCGC
* * * * *
25926976 AAGCCAGGGATCAACCCGGTCCCCCTCTACGTGCTGCCAATCCCACTGTCGGTCCTGCTACCACA
130 AAGCC-GGGATCAGCCCGATCCCCCTCTACGTGCTGTCAATCCCGCTG-CGGTCTTGCTACCACA
* * *
25927041 ACCATCGGTCCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACAAAAT
193 ACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAAT
* * * * ** *
25927106 GAACGTGCGGGCGCTCAGCCGGCCGGTGAGGTAGAATACGTAAGCCGGGGATCGGTTCGGTCCTC
258 GAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATC-GACCGG-CCCC
* * * * *
25927171 CCTGCATGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGGTC
321 CCTACATGCTGTCGATCCTACTGTAGCAACCCTCGATCCGATT
* *
25927214 CGATCTTAGACTGGGAATTAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCA
1 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* * ** * * * *
25927279 ACCCATGAAATGAGCATGCGGATGCTCAG-CTGATCGAAGAGGCTGACCGGAGAGGCATAATACG
66 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCT-AT-GGAGAGGCAGGCCGGAGAGGCATAATGCG
* * ** ** *
25927343 CAAGCCGGGGATCAGCCCGATCCCCCTCTGCCTATTGTTGATCCCGCTACCGGTCTTGCTACCAC
129 CAAGCC-GGGATCAGCCCGATCCCCCTCTACGTGCTGTCAATCCCGCT-GCGGTCTTGCTACCAC
* * * *
25927408 AACCCTCGATCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCTAACCCACGAGA
192 AACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * * * * *
25927473 TGAGCATGCAGGTGCTC-GTCGACCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACTCGATCCC
257 TGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCGAC-CG-GCCC
* **
25927537 CCCTACGTGCTACCGATCCTACTGTCA-CAACCCTCGATCCGATT
320 CCCTACATGCTGTCGATCCTACTGT-AGCAACCCTCGATCCGATT
* *
25927581 CGATCTTAGA-TGGGGAATGAACTCTGTATGTTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
1 CGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
*
25927645 AACCCACGAAACGAGCGTGCGGGC
65 AACCCATGAAACGAGCGTGCGGGC
25927669 ATTCAGCCAA
Statistics
Matches: 687, Mismatches: 125, Indels: 23
0.82 0.15 0.03
Matches are distributed among these distances:
366 2 0.00
367 148 0.22
368 532 0.77
369 5 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (363 bp):
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
ACCCATGAAACGAGCGTGCGGGCGCTCAGCCTATGGAGAGGCAGGCCGGAGAGGCATAATGCGCA
AGCCGGGATCAGCCCGATCCCCCTCTACGTGCTGTCAATCCCGCTGCGGTCTTGCTACCACAACC
CTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAG
CGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGTAAGCCGGGGATCGACCGGCCCCCCTAC
ATGCTGTCGATCCTACTGTAGCAACCCTCGATCCGATT
Found at i:25927247 original size:26 final size:26
Alignment explanation
Indices: 25927218--25927270 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25927208 CCGGTCCGAT
*
25927218 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25927244 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25927270 C
1 C
25927271 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25927626 original size:26 final size:26
Alignment explanation
Indices: 25927586--25927636 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
25927576 CGATTCGATC
*
25927586 TTAGATGGGGAATGAACTCTGTATGT
1 TTAGATGGGGAATGAACTCCGTATGT
25927612 TTAGACTGGGG-ATGAACTCCGTATG
1 TTAGA-TGGGGAATGAACTCCGTATG
25927637 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.25, C:0.12, G:0.31, T:0.31
Consensus pattern (26 bp):
TTAGATGGGGAATGAACTCCGTATGT
Found at i:25927811 original size:26 final size:26
Alignment explanation
Indices: 25927782--25927834 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25927772 CTGATCCGAT
*
25927782 CTTAGA-TCGGGAATGAAGTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
*
25927808 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25927834 C
1 C
25927835 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25927834 original size:197 final size:197
Alignment explanation
Indices: 25927521--25928053 Score: 685
Period size: 196 Copynumber: 2.7 Consensus size: 197
25927511 CGTAAGCCGA
* * * * * * *
25927521 GGATCGACTCGATCCCCCCTACGTGCTACCGATCCTACTGTCACAACCCTCGATCCGATTCGATC
1 GGATCGGCTCGGTCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCCGATCCGATC
* * *
25927586 TTAGATGGGGAATGAACTCTGTATGTTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
66 TTAGATCGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
25927651 CGAAACGAGCGTGCGGGCATTCAGCCAACCATAAAAG-CC-AACAGGAGAGGCATAATGCATAAG
131 CGAAACGAGCGTGCGAGCATTCAGCCAACC-GAAAAGACCGAAC-GGAGAAGCAAAATGCACAAG
25927714 CTAG
194 CTAG
** * * *
25927718 GGATTTGCTCGGTCCCCCCTGCGTGCTACCGATCCTAATACCGCAACCCTCGGTCTGATCCGATC
1 GGATCGGCTCGGTCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCCGATCCGATC
*
25927783 TTAGATCGGGAATGAAGTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
66 TTAGATCGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* * * ** *
25927848 CGAAACGAG-GTGTGAGCTTTCAGCCAACCGAAGAGACCGGTCGGAGAAGCAAAATGCGCAAGCT
131 CGAAACGAGCGTGCGAGCATTCAGCCAACCGAAAAGACCGAACGGAGAAGCAAAATGCACAAGCT
*
25927912 GG
196 AG
* * * * * * *
25927914 GGATCGGCCCAGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGTAACCCTCGGTCCGGTCTGATC
1 GGATCGGCTCGGTCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCCGATCCGATC
* *
25927979 TTAGACCGAGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
66 TTAGATCGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
*
25928044 CGAAATGAGC
131 CGAAACGAGC
25928054 ATACGGGAAC
Statistics
Matches: 289, Mismatches: 44, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
195 4 0.01
196 161 0.56
197 124 0.43
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (197 bp):
GGATCGGCTCGGTCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCCGATCCGATC
TTAGATCGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGAGCATTCAGCCAACCGAAAAGACCGAACGGAGAAGCAAAATGCACAAGCT
AG
Found at i:25928007 original size:26 final size:26
Alignment explanation
Indices: 25927978--25928030 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25927968 CCGGTCTGAT
25927978 CTTAGACCGAGAATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
* * *
25928004 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
25928030 C
1 C
25928031 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCCGTATG
Found at i:25929709 original size:11 final size:11
Alignment explanation
Indices: 25929693--25929725 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
25929683 CGGTTAGCCT
*
25929693 CTCCGATGATG
1 CTCCGACGATG
25929704 CTCCGACGATG
1 CTCCGACGATG
25929715 CTCCGACGATG
1 CTCCGACGATG
25929726 GCACCCCGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:25929823 original size:26 final size:26
Alignment explanation
Indices: 25929794--25929846 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25929784 GGCTCAAAAT
*
25929794 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
25929820 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
25929846 C
1 C
25929847 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:25930331 original size:26 final size:26
Alignment explanation
Indices: 25930295--25930347 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25930285 CTGATCCCAT
*
25930295 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25930321 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25930347 C
1 C
25930348 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25930691 original size:26 final size:26
Alignment explanation
Indices: 25930662--25930712 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25930652 CCGGTCTGAT
*
25930662 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25930688 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
25930713 TCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25931926 original size:26 final size:25
Alignment explanation
Indices: 25931897--25931948 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
25931887 CCGATCCGAT
25931897 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACT-GGAATGAACTCCGTATG
* *
25931923 CTTAGACTGGGATGAACTCCGTATG
1 CTTAAACTGGAATGAACTCCGTATG
25931948 C
1 C
25931949 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAAACTGGAATGAACTCCGTATG
Found at i:25932281 original size:26 final size:26
Alignment explanation
Indices: 25932252--25932330 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
25932242 CCGGTCTGAT
* *
25932252 CTTAGATCGAGAATGAACTCCGTATG
1 CTTAGATCGGGGATGAACTCCGTATG
*
25932278 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATCGGGGATGAACTCCGTATG
25932304 CTTAGA-CTGGGGATGAACTCCGTATG
1 CTTAGATC-GGGGATGAACTCCGTATG
25932330 C
1 C
25932331 CAAAGTCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGATCGGGGATGAACTCCGTATG
Found at i:25934245 original size:26 final size:26
Alignment explanation
Indices: 25934209--25934261 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25934199 CTGGTTCGAT
25934209 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25934235 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25934261 C
1 C
25934262 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25935466 original size:25 final size:26
Alignment explanation
Indices: 25935417--25935468 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
25935407 CTGGTCTGAT
* *
25935417 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
25935443 CTTAGACTGGG-ATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
25935468 C
1 C
25935469 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:25936011 original size:355 final size:358
Alignment explanation
Indices: 25935257--25936081 Score: 914
Period size: 355 Copynumber: 2.3 Consensus size: 358
25935247 AGCTCTGTAT
* * *
25935257 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAACAACGAAA-GAAGGGTACGGGCGCTCA
1 GCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCAACGAAACG-AGCGTACGGGCGCTCA
* *
25935321 GCCCACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCCTGGGTGCTGTTGAT
65 ACCCACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCCTAGGTGCTGTTGAT
* * * ** *
25935386 CCTACTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT
130 CCTACTGCCACAACCCTCGATCCGGTCCAATCTTAGACTGAGAATGAACTTCG-ATGCTTAGACT
* *
25935451 GGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAA
194 GGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCA--CGACC----
* * *
25935516 GGGCCGACCAGAGAGGCATAATGCGTAAGCCGAGGACCAGCCCAATCCCCCTCTGTATGCTGTCG
253 GGGCCG---AGAGAGGCATAATGCGCAAGCCGAGGACAAGCCCAATCCCCCTCTGCATGCTGTCG
*
25935581 ATCCCACTGCCGGTCCTGCTACCACAACCCTCGGTCCGACTAGG
315 ATCCCACTGCCGGTCCTGCTACCACAACCCTCAGTCCGACTAGG
* ** * * * ** *
25935625 GTTTAGATGTCGAATGTACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAA
1 GCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCAACGAAACGAGCGTACGGGCGCTCAA
* * * * * *
25935690 CCGATCGGAGAGGCAGATTGCGCAAGTCAGGGATC-AGCTC-GAT-CCCCCCTATGTGCTGTTGA
66 CCCACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGA-CCCAG-TCCCCCCCTAGGTGCTGTTGA
*
25935752 TCCTGCTGCCACAACCCTCGATCCGGTCCAATCTTAGACTGAGAATGAACTCTAC-ATGCTTAGA
129 TCCTACTGCCACAACCCTCGATCCGGTCCAATCTTAGACTGAGAATGAACT-T-CGATGCTTAGA
* * * * *
25935816 CTGGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACAGGTGCTCA-G-TC-GG
192 CTGG-GATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCACGACCGGG
* * * ** *
25935878 CCG-GAGAGGCATAATGTGCAAGTCGAGGATAAGCCTGATCCCCCTCTGCGTGCTGTCGATCCCA
256 CCGAGAGAGGCATAATGCGCAAGCCGAGGACAAGCCCAATCCCCCTCTGCATGCTGTCGATCCCA
* *
25935942 CTGCCGGTCCTGCTGCCACAACCCTCAGTCCGACTGGG
321 CTGCCGGTCCTGCTACCACAACCCTCAGTCCGACTAGG
* * * * * *
25935980 GCTTAGACATGGAATGTTCTCCGTATGCCTAAGTCAACCGACGAAACAAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCAACGAAACGAGCGTACGGGCGCTCAA
* * ** *
25936045 TCGACTAGAGAGGCAGGATGCGCAAGCC-GAGGATCGA
66 CCCACCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGA
25936082 ACGGGTGGTG
Statistics
Matches: 382, Mismatches: 67, Indels: 28
0.80 0.14 0.06
Matches are distributed among these distances:
354 1 0.00
355 164 0.43
356 1 0.00
359 5 0.01
364 1 0.00
365 1 0.00
367 76 0.20
368 131 0.34
369 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (358 bp):
GCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCAACGAAACGAGCGTACGGGCGCTCAA
CCCACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCCTAGGTGCTGTTGATC
CTACTGCCACAACCCTCGATCCGGTCCAATCTTAGACTGAGAATGAACTTCGATGCTTAGACTGG
GATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCACGACCGGGCCGAG
AGAGGCATAATGCGCAAGCCGAGGACAAGCCCAATCCCCCTCTGCATGCTGTCGATCCCACTGCC
GGTCCTGCTACCACAACCCTCAGTCCGACTAGG
Found at i:25936607 original size:11 final size:11
Alignment explanation
Indices: 25936593--25936629 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
25936583 GCTCTCCGGG
25936593 GATGCTCCGAT
1 GATGCTCCGAT
25936604 GATGCTCCGAT
1 GATGCTCCGAT
*
25936615 AATGCTCCGAT
1 GATGCTCCGAT
25936626 GATG
1 GATG
25936630 GTGCCTCAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (11 bp):
GATGCTCCGAT
Found at i:25937013 original size:26 final size:26
Alignment explanation
Indices: 25936984--25937036 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25936974 CTGGTCCGAT
25936984 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25937010 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25937036 C
1 C
25937037 CGAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25937380 original size:26 final size:26
Alignment explanation
Indices: 25937339--25937391 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25937329 TCGGTTCGAT
25937339 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
25937365 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
25937391 C
1 C
25937392 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:25938075 original size:25 final size:26
Alignment explanation
Indices: 25938025--25938076 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
25938015 CCGATCCGAT
* *
25938025 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25938051 CTTAGACTGGG-ATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25938076 C
1 C
25938077 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25939050 original size:14 final size:11
Alignment explanation
Indices: 25939019--25939043 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
25939009 CGATTAGGCT
25939019 CTCCGATGATG
1 CTCCGATGATG
25939030 CTCCGATGATG
1 CTCCGATGATG
25939041 CTC
1 CTC
25939044 TGACGATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.32, G:0.24, T:0.28
Consensus pattern (11 bp):
CTCCGATGATG
Found at i:25940629 original size:159 final size:158
Alignment explanation
Indices: 25940452--25940752 Score: 342
Period size: 158 Copynumber: 1.9 Consensus size: 158
25940442 GAAAAGGCGT
* * * * * * *
25940452 AATGCGTAAGCTGGGGATCGGCTCGATCCCCCTCTACATGCTGCCGGTCCCGCTGCCACAACCCT
1 AATGCGGAAGCCGAGGATCGGCCCGAT-CCACACTACATGCTGCCGATCCCGCTGCCACAACCCT
* *
25940517 CGTTCCG-GCTGGGGCTTAGACAT-GGAATG-AGCTCCC-TATGCCTAAGCCAACCCATGAAACG
65 CGATCCGAGCT-GAGCTTAGAC-TGGGAATGTA-C-CCCGTATGCCTAAGCCAACCCATGAAACG
25940578 -GACGTACAGGCACTCAGCTAGCCAGAGAGGCAG
126 AG-CGTACAGGCACTCAGCTAGCCAGAGAGGCAG
* * * *
25940611 AATGCGGAAGCCGAGGATCGGCCCGATGCACACTGCATGCTGTCGATCCTGCTGCCACAACCCTC
1 AATGCGGAAGCCGAGGATCGGCCCGATCCACACTACATGCTGCCGATCCCGCTGCCACAACCCTC
* * * *
25940676 GATCTGATCTGATCTTAGACTGGGAATGTACCCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
66 GATCCGAGCTGAGCTTAGACTGGGAATGTACCCCGTATGCCTAAGCCAACCCATGAAACGAGCGT
* *
25940741 GCGGGCACTCAG
131 ACAGGCACTCAG
25940753 TCTATCGGAG
Statistics
Matches: 118, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
157 4 0.03
158 87 0.74
159 27 0.23
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.19
Consensus pattern (158 bp):
AATGCGGAAGCCGAGGATCGGCCCGATCCACACTACATGCTGCCGATCCCGCTGCCACAACCCTC
GATCCGAGCTGAGCTTAGACTGGGAATGTACCCCGTATGCCTAAGCCAACCCATGAAACGAGCGT
ACAGGCACTCAGCTAGCCAGAGAGGCAG
Found at i:25942230 original size:25 final size:26
Alignment explanation
Indices: 25942180--25942230 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
25942170 CCTATCCGTT
*
25942180 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAACGAACTCCATATG
* *
25942206 CTTAGACTGGG-ACGAACTCCGTATG
1 CTTAAACTGGGAACGAACTCCATATG
25942231 GCTACGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (26 bp):
CTTAAACTGGGAACGAACTCCATATG
Found at i:25942563 original size:26 final size:26
Alignment explanation
Indices: 25942534--25942586 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25942524 CCGATCTGAT
*
25942534 CTTAAACTGGGAATGAATTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
25942560 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
25942586 C
1 C
25942587 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:25942931 original size:26 final size:26
Alignment explanation
Indices: 25942902--25942954 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25942892 CCAGTCTGAT
25942902 CTTAGACTGG-GAATGAACTCCATATG
1 CTTAGACTGGTG-ATGAACTCCATATG
*
25942928 CTTAGACTGGTGATGAACTCCGTATG
1 CTTAGACTGGTGATGAACTCCATATG
25942954 C
1 C
25942955 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTGATGAACTCCATATG
Found at i:25943838 original size:26 final size:26
Alignment explanation
Indices: 25943809--25943861 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25943799 TCGGTCTGAT
*
25943809 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25943835 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25943861 C
1 C
25943862 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25943943 original size:184 final size:185
Alignment explanation
Indices: 25943623--25943963 Score: 458
Period size: 184 Copynumber: 1.8 Consensus size: 185
25943613 GTGTCCCAAA
* *
25943623 ATCTTAGATTGGGAATGAGCTCTGTATGCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCTGTATGCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
25943688 CCACGAAATGAGCGTGCGGGCGCTCAACCAGCCGGAGAGGTAGAATGCGCAAGCCGAGGATCGAA
66 CCACAAAACGAGCGTGCGGGCGCTCAACCAGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGAA
25943753 CCGGTCCCCC-CTGCATGCTGTCGATCCTGTTGCCACAACCCTTTGTTCGGTCTG
131 CCGGTCCCCCTCTGCATGCTGTCGATCCTGTTGCCACAACCCTTTGTTCGGTCTG
* *
25943807 ATCTTAGACTGGGAATGAACT-TCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGCCA
1 ATCTTAGACTGGGAATGAACTCT-GTATGCTTAAACAT-GGAATGAACTCCGTATGCCTAAGCCA
* * * ** * *
25943870 ACCCATAAAACGAGCGTTCGGGCGCT-TAGTAGGCCGGAGAGGCATAATGCACAAGCCGAGGGTC
64 ACCCACAAAACGAGCGTGCGGGCGCTCAACCA-GCCGGAGAGGCAGAATGCACAAGCCGAGGATC
* *
25943934 -AGCCCGGTCCCCCTCTGCGTGCTGTCGATC
128 GA-ACCGGTCCCCCTCTGCATGCTGTCGATC
25943964 TCGCTGCCAG
Statistics
Matches: 135, Mismatches: 17, Indels: 9
0.84 0.11 0.06
Matches are distributed among these distances:
183 5 0.04
184 115 0.85
185 15 0.11
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (185 bp):
ATCTTAGACTGGGAATGAACTCTGTATGCTTAAACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACAAAACGAGCGTGCGGGCGCTCAACCAGCCGGAGAGGCAGAATGCACAAGCCGAGGATCGAA
CCGGTCCCCCTCTGCATGCTGTCGATCCTGTTGCCACAACCCTTTGTTCGGTCTG
Found at i:25946394 original size:159 final size:159
Alignment explanation
Indices: 25946092--25946594 Score: 352
Period size: 159 Copynumber: 3.2 Consensus size: 159
25946082 GCTCCGTATG
* * * * * * *
25946092 CTTAGACTGGGGATGAATTTCGTATGCCTAAGCCAACCTACGAAACGATCGTATGGGCACTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGC
* * * *
25946157 CGATCGGAGAGGCAGAATACGTAAGCCGGGGATCGACTCGATCCCCCCCTGCGTGCTGTCGATCC
66 CGATCGAAGAGGCAGAATACGCAAGCCGGGGATCGACTCGATCCCCCACTGCGTGCTGCCGATCC
* **
25946222 TGCTACCGTAACCCTCAGTCCGATCTGAT
131 TGCCACCACAACCCTCAGTCCGATCTGAT
* * * * * *
25946251 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAGCCCATAAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGC
* * * * * *
25946316 TGATCGAAGAGGCATAATGCGCAAGCCGGGGACTGGGC-CGATCCCCCACTGTGTGCTGCC-AGT
66 CGATCGAAGAGGCAGAATACGCAAGCCGGGGA-TCGACTCGATCCCCCACTGCGTGCTGCCGA-T
* * * **
25946379 CCTGCCGCCACAACCCTCGGTCCG-GCTGGGG
129 CCTGCCACCACAACCCTCAGTCCGATCT-GAT
* * * * * * * * ** *
25946410 CTTAGACAT-GGAATGAGCTCCCTATTCGTAAGCTAACCCACGAAACGGGCGTACGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTTCGTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCAG
* ** * * * ** * * ** * * * *
25946474 CTGGCCGGAGAGGTAAAATGTGAAATCCGGATATCGACTCGGTCCCCC-CTGCATGTTGTCGATC
65 CCGATCGAAGAGGCAGAATACGCAAGCCGGGGATCGACTCGATCCCCCACTGCGTGCTGCCGATC
** * * *
25946538 CTGCTGCCACAACCCTCGGTCTGGTCTGAT
130 CTGCCACCACAACCCTCAGTCCGATCTGAT
25946568 CTTAGACTGGGAATGAAC-TCTGTATGC
1 CTTAGACTGGGAATGAACTTC-GTATGC
25946595 TTAGACTCGG
Statistics
Matches: 263, Mismatches: 72, Indels: 19
0.74 0.20 0.05
Matches are distributed among these distances:
157 2 0.01
158 57 0.22
159 200 0.76
160 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTTCGTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCAGC
CGATCGAAGAGGCAGAATACGCAAGCCGGGGATCGACTCGATCCCCCACTGCGTGCTGCCGATCC
TGCCACCACAACCCTCAGTCCGATCTGAT
Found at i:25946597 original size:26 final size:25
Alignment explanation
Indices: 25946568--25946646 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 25
25946558 CTGGTCTGAT
*
25946568 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
*
25946594 CTTAGACTCGGGATAAACTCCGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
25946620 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTG-GGATGAACTCCGTATG
25946646 C
1 C
25946647 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
25 1 0.02
26 44 0.92
27 3 0.06
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:25946827 original size:26 final size:26
Alignment explanation
Indices: 25946791--25946843 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25946781 CCGGTTCGAT
*
25946791 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
25946817 CTTAGACTGGGGATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
25946843 C
1 C
25946844 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:25947195 original size:26 final size:26
Alignment explanation
Indices: 25947159--25947211 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25947149 CTGACCCGAT
*
25947159 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
25947185 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
25947211 C
1 C
25947212 CTAAGACAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:25947807 original size:11 final size:11
Alignment explanation
Indices: 25947791--25947815 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
25947781 CGGTTAGGCT
25947791 CTCCGACGATG
1 CTCCGACGATG
25947802 CTCCGACGATG
1 CTCCGACGATG
25947813 CTC
1 CTC
25947816 GGCAATGGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.40, G:0.24, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:25948291 original size:159 final size:157
Alignment explanation
Indices: 25947916--25948318 Score: 449
Period size: 158 Copynumber: 2.5 Consensus size: 157
25947906 AGCTCCGTAT
* *
25947916 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
25947981 CCAGCTGGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
66 CCAGCTGGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
* *
25948046 TACTGTTGTAAACCTTGGTCTGGTCCGA
131 -ACTGTTGTAAACCTCGGTCAGGTCCGA
* * * * * * *
25948074 TCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAG
1 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
25948139 CC-GACT-GAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGA
66 CCAG-CTGGAA-AGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCC-CTACGTGCTGTCGA
* * *
25948202 TCC-C-GTTGCCATAACCCTCGGTCCAGGT-GGG
128 TCCACTGTTG---TAAACCTCGGT-CAGGTCCGA
* * * *
25948233 GCTTAGACAGGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC-A
* * *
25948298 CCCA-CCGGAGAGGCAGAATGC
65 GCCAGCTGGAAAGGCAGAATGC
25948319 ACACAGAATG
Statistics
Matches: 201, Mismatches: 34, Indels: 19
0.79 0.13 0.07
Matches are distributed among these distances:
156 4 0.02
157 5 0.02
158 94 0.47
159 89 0.44
160 9 0.04
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGCTGGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
ACTGTTGTAAACCTCGGTCAGGTCCGA
Found at i:25948453 original size:26 final size:26
Alignment explanation
Indices: 25948403--25948455 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25948393 CCGATCTGAT
* *
25948403 CTTAGACTGGGAATGAACACTGTATG
1 CTTAGACTGGGAATAAACACCGTATG
* *
25948429 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACACCGTATG
25948455 C
1 C
25948456 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACACCGTATG
Found at i:25949149 original size:26 final size:26
Alignment explanation
Indices: 25949111--25949163 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25949101 CACTCACATT
**
25949111 CTTAGACTAGGAATGTGCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25949137 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
25949163 C
1 C
25949164 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25949506 original size:159 final size:158
Alignment explanation
Indices: 25949136--25949575 Score: 401
Period size: 159 Copynumber: 2.8 Consensus size: 158
25949126 TGCTCCGTAT
* * * *
25949136 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGGAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** ** *
25949201 CAGGCCGGAGAGGCTAAATGCGCAAGCTGGGGATCGACCTGGTCCCCCCTGCGTGCTGTAGATCT
66 CAGGCCAAAGAGGCTAAATGCGCAAGCCAGGGATCGACCTGGTCCCCCCTGCGTGCTGTAGATCC
** * * * *
25949266 TGCTGCCGCAACCTTCGGTCCGATCTGA
131 CACTGCCACAACCCTCAGTCCGAGCTGA
* * * * * *
25949294 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
25949358 GCCGGCTAAAGTGGC-ATAATGCGCAAGCCAGGGATCGACCCT-GTCCCCCTCTGCGTGTTGCT-
65 GCAGGCCAAAGAGGCTA-AATGCGCAAGCCAGGGATCGA-CCTGGTCCCCC-CTGCGTGCTG-TA
* *
25949420 GGTCCCACTGCCACAACCCTCAGTCC-AGCTGGG
126 GATCCCACTGCCACAACCCTCAGTCCGAGCT-GA
* * * *
25949453 GCTTAGACATGGAATGAGCTCCCTATTCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * * *
25949518 CTGGCCGGAGAGG-TAGAATGCACAAGCC-GAAGATCGA-CTCGGTCCACCCTACGTGCTG
66 CAGGCCAAAGAGGCTA-AATGCGCAAGCCAG-GGATCGACCT-GGTCCCCCCTGCGTGCTG
25949576 CCGATCCTGC
Statistics
Matches: 223, Mismatches: 48, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
157 4 0.02
158 100 0.45
159 117 0.52
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CAGGCCAAAGAGGCTAAATGCGCAAGCCAGGGATCGACCTGGTCCCCCCTGCGTGCTGTAGATCC
CACTGCCACAACCCTCAGTCCGAGCTGA
Found at i:25950654 original size:26 final size:26
Alignment explanation
Indices: 25950618--25950669 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25950608 TTAGTTCAAT
* *
25950618 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
* *
25950644 CTTAGATTGGGGACGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
25950670 TCTAAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:25951188 original size:368 final size:359
Alignment explanation
Indices: 25950431--25951792 Score: 1227
Period size: 368 Copynumber: 3.8 Consensus size: 359
25950421 CTGCCAATCT
* * * * * * *
25950431 TGCTGCCACAACCCTCGATCCGGTTAGGGCTTAGACTTAGAATG-AGCTCCCTATGCCTAAGCCA
1 TGCTGCCACAACCCACGGTCCGGCTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCA
* * * * * * * * * * **
25950495 ACACACGAAACGGGCGTGCGGGCACCT-AACCGATCGGAGAGGTAGAATGTGCAAGCCGAGGATC
65 ACCCATGAAATGAGCGTACGGG-AGCTCAGCAGGTCGGAGAGGCAGAATGCACAAGCCGAGGATC
* * * * * ** * * ** *
25950559 GGCCTGGTCCCCCCTACGTGTTGTCGATCCAGCTGCTGCAACCCTCGTTTTAGT-TCAATCTTAG
129 GGCCCGATCCCCCCTGCATGCTACCGATCCAGCTGCCGCAACCCTCGATCCAGTCT-GATCTTAG
* * * * *
25950623 ACTGGGAATGAACTCCGTATGCTTAGATTGGGGACGAACTCCATATGTCTAAATCAACCCACGAA
193 ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * ** *
25950688 ACGAGTGTACGGGCACTCAATCGGCAGGAGAAGCCGATCGGAGAGGTGTAATGCACAAGTCGGGG
258 ACGAGCGTACGGGC-GTC-A-CGGCA-GAG-AGCCGATCGGAGAGGCATAATGCACAAGTCGAGG
* * * *
25950753 ATCAA-CCCGGTCCCCATCTTCGTGCTGCCGACCCCGTTGCCAGTGC
318 AT-AAGCCC-GTCCCC-T-TTCGTGCTACCGATCCCGCTGCCGGT-C
* *
25950799 TGCTGTCC-CAACCCACGGTCCGGCTAGGGCTTAGGCATGGAATGTACTCCGTATGCCTAAGCCA
1 TGCTG-CCACAACCCACGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCA
* * * * * *
25950863 ACCCGTGAAACGAGCGTACGAGTGCTCAGCAGGTCAGAGAGGCAGAATGCACAAGCCGAGGATCA
65 ACCCATGAAATGAGCGTACGGGAGCTCAGCAGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCG
* * * * * * * *
25950928 GCCCGGTCCCCCCTGCATGCTGCCGATCCTGCTGTCGTAACCCTCGATTCGGTCTGATCTTAGAT
130 GCCCGATCCCCCCTGCATGCTACCGATCCAGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGAC
* *
25950993 TGTGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
195 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * *
25951058 GAGCGTGCGGGCGTTCACCCGGCCAGAGAGGCCAATCGGAGAGGCATAATGCACAAGCCAAGGAT
260 GAGCGTACGGGCG-TCA--CGG-CAGAGA-GCCGATCGGAGAGGCATAATGCACAAGTCGAGGAT
*
25951123 AAGCCCAGTCCCTCTTTATGTGCTACCGATCCCGCTGCCGGTC
320 AAGCCC-GTCCC-CTTT-CGTGCTACCGATCCCGCTGCCGGTC
* *
25951166 TTGCTGCCACAACCTC-CGGTCCGACTGGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCC
1 -TGCTGCCACAACC-CACGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCC
* * *
25951230 AACCCATGAAATGAGCG-AGCGGGCA-CTCAGCTGGTCGGAGAGGTAGAATGCGA-AAGCCGGGG
64 AACCCATGAAATGAGCGTA-CGGG-AGCTCAGCAGGTCGGAGAGGCAGAATGC-ACAAGCCGAGG
* *
25951292 ATCGGCTCGATCCCCCCTGCATGCTACCGATCCAGCTGCCGCAACCCTCGATCC-GATCCGATCT
126 ATCGGCCCGATCCCCCCTGCATGCTACCGATCCAGCTGCCGCAACCCTCGATCCAG-TCTGATCT
*
25951356 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGTGATGAACTCCGTATGCCTAAGTCAACCCAC
190 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *** *
25951421 GAAACGAGCATGC-GGC--CAC-TC--A-A-CCGGTCGGAGAGGCATAATGTGTAAGTTGAGGAT
255 GAAACGAGCGTACGGGCGTCACGGCAGAGAGCCGATCGGAGAGGCATAATGCACAAGTCGAGGAT
* * * * ** *
25951478 CAGCTCGATCCCCCTCTGCATGCTACCGATCCTACTGTCGGTCC
320 AAGCCCG-T-CCCCT-TTCGTGCTACCGATCCCGCTGCCGGT-C
* * * *
25951522 TGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAACGTACTCCGTATGGCTAAGCCAA
1 TGCTGCCACAACCCACGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAA
* * * ** * * * *
25951587 CCCAAGAAATGAGCCTGCGGGAGCTCAGCCA-ACCGGAGAGGCAGAATACGCAAGTCGGGGATCG
66 CCCATGAAATGAGCGTACGGGAGCTCAG-CAGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCG
** * ** * * **
25951651 GCCCGAT-CCCCCTGTGTACTACCGATCCTA-CTGCCTTAACCCTTGATCCAGTTTGATCTTTTA
130 GCCCGATCCCCCCTGCATGCTACCGATCC-AGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGA
* *
25951714 CTGGGAATGAACTCCGTATGCTTCGACTGGGGATGAACTCCGTATGCCTAAGTGAACCCACGAAA
194 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
*
25951779 CGAACGTACGGGCG
259 CGAGCGTACGGGCG
25951793 CTCAGTCGGA
Statistics
Matches: 828, Mismatches: 135, Indels: 74
0.80 0.13 0.07
Matches are distributed among these distances:
354 113 0.14
355 169 0.20
356 6 0.01
357 1 0.00
358 1 0.00
360 1 0.00
362 1 0.00
364 2 0.00
367 16 0.02
368 509 0.61
369 9 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (359 bp):
TGCTGCCACAACCCACGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAA
CCCATGAAATGAGCGTACGGGAGCTCAGCAGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGG
CCCGATCCCCCCTGCATGCTACCGATCCAGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTACGGGCGTCACGGCAGAGAGCCGATCGGAGAGGCATAATGCACAAGTCGAGGATAAGCCC
GTCCCCTTTCGTGCTACCGATCCCGCTGCCGGTC
Found at i:25951383 original size:26 final size:26
Alignment explanation
Indices: 25951354--25951406 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25951344 CCGATCCGAT
25951354 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGTG-ATGAACTCCGTATG
25951380 CTTAGACTGGTGATGAACTCCGTATG
1 CTTAGACTGGTGATGAACTCCGTATG
25951406 C
1 C
25951407 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTGATGAACTCCGTATG
Found at i:25952250 original size:26 final size:26
Alignment explanation
Indices: 25952209--25952310 Score: 170
Period size: 26 Copynumber: 3.9 Consensus size: 26
25952199 CTGGTCTGAT
*
25952209 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACTTGGG-ATGAACTCCGTACG
25952235 CTTAGACTTGGGATGAACTCCGTACG
1 CTTAGACTTGGGATGAACTCCGTACG
25952261 CTTAGACTTGGGATGAACTCCGTACG
1 CTTAGACTTGGGATGAACTCCGTACG
*
25952287 CTTAGACTTGGGATGAACTTCGTA
1 CTTAGACTTGGGATGAACTCCGTA
25952311 TGCCTAAGTC
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
26 69 0.95
27 4 0.05
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTTGGGATGAACTCCGTACG
Found at i:25952848 original size:11 final size:11
Alignment explanation
Indices: 25952829--25952861 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
25952819 CGGTTAGGTT
25952829 CTCCGGCGATG
1 CTCCGGCGATG
*
25952840 CTCCAGCGATG
1 CTCCGGCGATG
25952851 CTCCGGCGATG
1 CTCCGGCGATG
25952862 GTGCCCTAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.12, C:0.36, G:0.33, T:0.18
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:25953474 original size:26 final size:26
Alignment explanation
Indices: 25953423--25953475 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25953413 CCGATCTGAT
* *
25953423 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25953449 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
25953475 C
1 C
25953476 CTAAGTGATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25953824 original size:26 final size:26
Alignment explanation
Indices: 25953788--25953840 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25953778 CCAGTCCAAT
*
25953788 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25953814 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25953840 C
1 C
25953841 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25957444 original size:26 final size:26
Alignment explanation
Indices: 25957415--25957465 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25957405 GGCTCAAAAT
*
25957415 CTTAGAC-TGGGAATGAGCTCCGTATA
1 CTTAGACAT-GGAATGAACTCCGTATA
*
25957441 CTTAGACATGGAATGAACTTCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
25957466 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATA
Found at i:25958752 original size:685 final size:685
Alignment explanation
Indices: 25957441--25958817 Score: 1786
Period size: 685 Copynumber: 2.0 Consensus size: 685
25957431 GCTCCGTATA
* *
25957441 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
**
25957506 AGGCTGGAGAGCCAAAATGCGTAAGCCGAAGATCGACCCGGTCCCCCCTACATGCTGTCAATCCT
66 AGGCCAGAGAGCCAAAATGCGTAAGCCGAAGATCGACCCGGTCCCCCCTACATGCTGTCAATCCT
* * * *
25957571 ACTGCCACAACCCTTGGTCCGATCTGATCTTAGATTGGGAATGAACTCTGTATGCATAAGTCAAC
131 ACTGACACAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
* * ** * * *
25957636 CCACGAAACGAGTGTGCAGGTGCTGAGCCGGTCGAAGCGACATAATGCGCAAGCCAGGGATCAGC
196 CCACGAAACGAGCGTGCAGGTGCTGAGCCGGTCAAAAAGACATAACGCACAAGCCAGGGATCAAC
* * * * * * *
25957701 CCGGTCCCCTTCTGCATGCTGCCCGTCCTGTTGTCACAACCCTCGGTCTGGCTGGGGCTTAGACA
261 CCGGTCCCCCTCTGCATGCTGCCCATCCTGCTGCCACAACCCTCGATCCGGCTAGGGCTTAGACA
** * *
25957766 TGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGTTCAGCCGATCGAA
326 TGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGCCGAGCCAA
* * * * * * * * * *
25957831 GAGGCTGAATGTGCAAGTCGGGGATCGACCCGGTCCCTCCTGCGTGCTGTCGATCCTGCTGCTGT
391 GAGGCAGAATGCGCAAGCCAGAGATCGACCCGATCCCTCCTGCGTACTGCCAATCCTGCTGCTGC
* ** *
25957896 AGCCCTCGGTCTGGTTCGATCTTAGATTGGAAATGAACTCCATATGCTTAGACTGGGGATGAACT
456 AACCCTCGGTCCAGTCCGATCTTAGATTGGAAATGAACTCCATATGCTTAGACTGGGGATGAACT
* * * * *
25957961 CCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGAGGTCAGCCG
521 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAACCGACCAGAGACGCCAGCCG
* * ** * *
25958026 GAGAGGCATAATGTGCAAGCCGGGGATCAGCCCGATCCCCCTCTACATGCTGTCGATCCCGCTGT
586 GAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTACATGCTACCGATCCCACTGC
*
25958091 CGGTCCTGCTACCACAACCCTCGATCAGACTGGGG
651 CGATCCTGCTACCACAACCCTCGATCAGACTGGGG
* *
25958126 CTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
* * * * * * *
25958191 C-GGCCATAGAGGCAGAATGCGTAAGTCGAGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
65 CAGGCCAGAGAGCCAAAATGCGTAAGCCGAAGATCGACCCGGTCCCCCCTACATGCTGTCAATCC
** * *
25958255 TACTGATGCAA-CCTTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
130 TACTGACACAACCCTT-GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* *
25958319 ACCCACGAAATGAGCGTGCAGGTGCTGAGCCGGTCAAAAAGGCATAACGCACAAGCC-GAGGATC
194 ACCCACGAAACGAGCGTGCAGGTGCTGAGCCGGTCAAAAAGACATAACGCACAAGCCAG-GGATC
** * * * * *
25958383 AACCCGGTCCCCCTCTGTGTGTTGTCTAT-CTCGCTGCCAGAACCCTCTATCCGGCTAGGGCTTA
258 AACCCGGTCCCCCTCTGCATGCTGCCCATCCT-GCTGCCACAACCCTCGATCCGGCTAGGGCTTA
*
25958447 GACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCACTCAGCC-AG
322 GACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGCCGAG
*
25958511 CCAGAGAGGCAGAATGCGCAAGCCAGAGATC-AGCCCGATCCC-CTCTGCGTACTGCCAATCTTG
387 CCA-AGAGGCAGAATGCGCAAGCCAGAGATCGA-CCCGATCCCTC-CTGCGTACTGCCAATCCTG
* * *
25958574 CTG-TCGCAACCCTCGGTCCAGTCCGATCTTAGACTTTG-AATGAACTTCGTATGCTTAGACTGG
449 CTGCT-GCAACCCTCGGTCCAGTCCGATCTTAGA-TTGGAAATGAACTCCATATGCTTAGACTGG
* *
25958637 GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGAGCGCTCAACTGACC-GAAG
512 GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAACCGACCAG-AG
* *
25958701 ACGCC-GACCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCTCTACGTGCTACC
576 ACGCCAG-CCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTACATGCTACC
* * * * *
25958765 GATCCCACTGCCGATCCTGCTGCCACAACCCTCGGTCCGGCTGTGG
640 GATCCCACTGCCGATCCTGCTACCACAACCCTCGATCAGACTGGGG
25958811 CTTAGAC
1 CTTAGAC
25958818 TAGGGATGAG
Statistics
Matches: 593, Mismatches: 88, Indels: 22
0.84 0.13 0.03
Matches are distributed among these distances:
684 15 0.03
685 574 0.97
686 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (685 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
AGGCCAGAGAGCCAAAATGCGTAAGCCGAAGATCGACCCGGTCCCCCCTACATGCTGTCAATCCT
ACTGACACAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
CCACGAAACGAGCGTGCAGGTGCTGAGCCGGTCAAAAAGACATAACGCACAAGCCAGGGATCAAC
CCGGTCCCCCTCTGCATGCTGCCCATCCTGCTGCCACAACCCTCGATCCGGCTAGGGCTTAGACA
TGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGCCGAGCCAA
GAGGCAGAATGCGCAAGCCAGAGATCGACCCGATCCCTCCTGCGTACTGCCAATCCTGCTGCTGC
AACCCTCGGTCCAGTCCGATCTTAGATTGGAAATGAACTCCATATGCTTAGACTGGGGATGAACT
CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAACCGACCAGAGACGCCAGCCG
GAGAGGCATAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTACATGCTACCGATCCCACTGC
CGATCCTGCTACCACAACCCTCGATCAGACTGGGG
Found at i:25959009 original size:15 final size:14
Alignment explanation
Indices: 25958991--25959024 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
25958981 TTTAATTATT
25958991 TATTTATATATATAA
1 TATTTATATA-ATAA
*
25959006 TATTTATATAATGA
1 TATTTATATAATAA
25959020 TATTT
1 TATTT
25959025 TTAAATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (14 bp):
TATTTATATAATAA
Found at i:25960150 original size:26 final size:26
Alignment explanation
Indices: 25960121--25960172 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25960111 GCTCAAAATG
*
25960121 TTAGAC-TGGGAATGAGCTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
25960147 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCGTATGC
25960173 CTAAGCCGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGC
Found at i:25960333 original size:26 final size:26
Alignment explanation
Indices: 25960304--25960354 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
25960294 CCGATCTGAT
25960304 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
25960330 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAAACTGGGAATGAACTCCGTAT
25960355 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:25960701 original size:26 final size:26
Alignment explanation
Indices: 25960672--25960724 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25960662 CCAGTCTGAT
25960672 CTTAGACTGG-GAATGAACTCCATATG
1 CTTAGACTGGTG-ATGAACTCCATATG
*
25960698 CTTAGACTGGTGATGAACTCCGTATG
1 CTTAGACTGGTGATGAACTCCATATG
25960724 C
1 C
25960725 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTGATGAACTCCATATG
Found at i:25961606 original size:26 final size:26
Alignment explanation
Indices: 25961577--25961632 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
25961567 TCGGTCCGAT
*
25961577 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25961603 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25961629 CTTA
1 CTTA
25961633 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25961921 original size:26 final size:26
Alignment explanation
Indices: 25961881--25961932 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25961871 CGGTTTGATT
25961881 TTAGACTGAGAATGAA-TTCAGTATGC
1 TTAGACTGAGAATGAACTTC-GTATGC
* *
25961907 TTAGACTGGGGATGAACTTCGTATGC
1 TTAGACTGAGAATGAACTTCGTATGC
25961933 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTTCGTATGC
Found at i:25963536 original size:26 final size:26
Alignment explanation
Indices: 25963481--25963536 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
25963471 TCAGTCCGAT
**
25963481 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATAAC
** *
25963507 CTTAGACTGGGGTTGAACTCTGTAAC
1 CTTAGACTGGGAATGAACTCTATAAC
25963533 CTTA
1 CTTA
25963537 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATAAC
Found at i:25963864 original size:26 final size:26
Alignment explanation
Indices: 25963835--25963887 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25963825 CCGGTCCGAT
*
25963835 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
25963861 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25963887 C
1 C
25963888 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25964365 original size:26 final size:25
Alignment explanation
Indices: 25964336--25964414 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 25
25964326 CTGGTCTGAT
*
25964336 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
*
25964362 CTTAGACTCGGGATAAACTCCGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
25964388 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACT-GGGATGAACTCCGTATG
25964414 C
1 C
25964415 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 45 0.94
27 3 0.06
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:25964595 original size:26 final size:26
Alignment explanation
Indices: 25964559--25964611 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25964549 CCGATTCGAT
25964559 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
25964585 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
25964611 C
1 C
25964612 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:25964956 original size:26 final size:26
Alignment explanation
Indices: 25964927--25964979 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25964917 CCGACCCGAT
*
25964927 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
25964953 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
25964979 C
1 C
25964980 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:25965575 original size:11 final size:11
Alignment explanation
Indices: 25965559--25965583 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
25965549 CGGTTAGGCT
25965559 CTCCGACGATG
1 CTCCGACGATG
25965570 CTCCGACGATG
1 CTCCGACGATG
25965581 CTC
1 CTC
25965584 GGCAATGGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.40, G:0.24, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:25966054 original size:159 final size:158
Alignment explanation
Indices: 25965674--25966086 Score: 447
Period size: 158 Copynumber: 2.6 Consensus size: 158
25965664 ATTGGGATTG
*
25965674 AGCTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
1 AGCTCCG-A-GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTAC
* *
25965739 GGGTGCTCAGCCAGCTGGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACGTG
64 GGGCGCTCAGCCAGCTGGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTG
* **** **
25965804 CTGTCGATCCTGCTGTTGTAACCCTTGGTC
129 CTGTCGATCCCGCTGCCACAACCCTCAGTC
* * * * *
25965834 TGGTCCGATCTTAGAC-TGAGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTACG
1 AGCTCCGAGCTTAGACATG-GAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACG
* ** * * * *
25965898 GGCGCTGAGCTGGCT-GAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGATCCCCCTCTGCGT
65 GGCGCTCAGCCAGCTGGAA-AGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCC-CTACGT
25965962 GCTGTCGATCCCGCTGCCACAACCCTCAGTCC
128 GCTGTCGATCCCGCTGCCACAACCCTCAGT-C
* * * * * * *
25965994 AGCT-GGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGG
1 AGCTCCGAGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGG
* * *
25966058 GCGCTCAACCCA-CCGGAGAGGCAGAATGC
66 GCGCTC-AGCCAGCTGGAAAGGCAGAATGC
25966087 ACACAAAATG
Statistics
Matches: 205, Mismatches: 41, Indels: 15
0.79 0.16 0.06
Matches are distributed among these distances:
157 5 0.02
158 94 0.46
159 92 0.45
160 14 0.07
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
AGCTCCGAGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGG
GCGCTCAGCCAGCTGGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCT
GTCGATCCCGCTGCCACAACCCTCAGTC
Found at i:25966221 original size:26 final size:26
Alignment explanation
Indices: 25966171--25966223 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25966161 CTGATCTGAT
* *
25966171 CTTAGACTGGGAATGAACACTGTATG
1 CTTAGACTGGGAATAAACACCGTATG
* *
25966197 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACACCGTATG
25966223 C
1 C
25966224 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACACCGTATG
Found at i:25966916 original size:26 final size:26
Alignment explanation
Indices: 25966878--25966930 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25966868 CACTCACATT
**
25966878 CTTAGACTAGGAATGTGCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25966904 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
25966930 C
1 C
25966931 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25967273 original size:159 final size:159
Alignment explanation
Indices: 25966903--25967349 Score: 440
Period size: 159 Copynumber: 2.8 Consensus size: 159
25966893 TGCTCCGTAT
* * * * *
25966903 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGGATCGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
25966968 CAGGCCGGAGAGGC-TAAATGCGCAAGCTGGGGATCGA-CCTGGTCCCCC-CTGCGTGCTGTAGA
66 CAGGCCGGAGAGGCAT-AATGCGCAAGCCGGGGATCGACCCT-GTCCCCCTCTGCGTGCTGCAGA
*** * * * *
25967030 TCTTGCTGCCGCAACCTTCGGTCCGATCTGA
129 TCCCACTGCCACAACCCTCAGTCCGAGCTGA
* * * * * *
25967061 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * * *
25967125 GCCGG-CTAAAATGGCATAATGCGCAAGCCGGGGATCGACCCTGTCCCCCTCTGCGTGTTGCCGG
65 GCAGGCCGGAGA-GGCATAATGCGCAAGCCGGGGATCGACCCTGTCCCCCTCTGCGTGCTGCAGA
*
25967189 TCCCACTGCCACAACCCTCAGTCC-AGCTGGG
129 TCCCACTGCCACAACCCTCAGTCCGAGCT-GA
* * * *
25967220 GCTTAGACATGGAATGAGCTCCCTATTCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
25967285 CTGGCCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGGTCCACC-CTACGTGCTGCCGATC
66 CAGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCTGTCCCCCTCTGCGTGCTGCAGATC
25967349 C
131 C
25967350 TGCTGTCGTA
Statistics
Matches: 231, Mismatches: 50, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 4 0.02
158 102 0.44
159 121 0.52
160 4 0.02
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CAGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCTGTCCCCCTCTGCGTGCTGCAGATC
CCACTGCCACAACCCTCAGTCCGAGCTGA
Found at i:25967415 original size:26 final size:26
Alignment explanation
Indices: 25967379--25967431 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25967369 TTGATCAGAT
*
25967379 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
25967405 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
25967431 C
1 C
25967432 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:25967788 original size:26 final size:26
Alignment explanation
Indices: 25967747--25967799 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25967737 CCAGTCTGAT
*
25967747 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25967773 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25967799 C
1 C
25967800 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25968500 original size:26 final size:26
Alignment explanation
Indices: 25968471--25968526 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
25968461 GGCTCAAAAT
*
25968471 CTTAGACT-GGGAATGAGCTCCGTATG
1 CTTAGA-TAGGGAATGAACTCCGTATG
*
25968497 CTTAGATATGGAATGAACTCCGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
25968523 CTTA
1 CTTA
25968527 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATG
Found at i:25968893 original size:159 final size:159
Alignment explanation
Indices: 25968496--25968900 Score: 467
Period size: 159 Copynumber: 2.5 Consensus size: 159
25968486 AGCTCCGTAT
* * * *
25968496 GCTTAGATATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAGCTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** **
25968561 -CGGACCGGAGAGGCAGAATGCGCAAGTTGGGGATCAACTTGGTCCCCCCTTGCGTGCTGTCAAT
66 TCGG-CCGGAGAGGCAGAATACGCAAACTGGGGATCAACCCGGTCCCCCCTTGCGTGCTGTCAAT
* * *
25968625 CCTGCTGCCACATCCCTCAGTCCAGTCTGA
130 CCCGCTGCCACAACCCTCAGTCCAGTCGGA
* * * * *
25968655 TCTTAGAC-TGGGAATGAGCTCCGTATGCATAAGTCAACCCACGAAATGAACGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAGCTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * * * *
25968719 GTCGACCAAAAAGGCATAATACGCAAACTGGGGATCAGCCCGGT-CCCCCTCTGCGTGTTGTCGA
65 GTCGGCCGGAGAGGCAGAATACGCAAACTGGGGATCAACCCGGTCCCCCCT-TGCGTGCTGTCAA
* *
25968783 TCCCGCTGCCACAACCCTCGGTCCGAGT-GGG
129 TCCCGCTGCCACAACCCTCAGTCC-AGTCGGA
* * *
25968814 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAGCTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
25968879 TTGGCCGGAGAGGCAGAATACG
66 TCGGCCGGAGAGGCAGAATACG
25968901 TAAATCGAGG
Statistics
Matches: 200, Mismatches: 41, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
158 7 0.04
159 187 0.94
160 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAGCTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGGCCGGAGAGGCAGAATACGCAAACTGGGGATCAACCCGGTCCCCCCTTGCGTGCTGTCAATC
CCGCTGCCACAACCCTCAGTCCAGTCGGA
Found at i:25969002 original size:26 final size:26
Alignment explanation
Indices: 25968966--25969024 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
25968956 CTCGGTCTGA
25968966 TCCG-ATG-TTAGACTAGGAATGAAC
1 TCCGTATGCTTAGACTAGGAATGAAC
*
25968990 TCCGTATGCTTAGACTAGGGATGAAC
1 TCCGTATGCTTAGACTAGGAATGAAC
*
25969016 TTCGTATGC
1 TCCGTATGC
25969025 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTAGGAATGAAC
Found at i:25969376 original size:26 final size:26
Alignment explanation
Indices: 25969326--25969378 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25969316 CCGGTTCGAT
**
25969326 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25969352 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25969378 C
1 C
25969379 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25969682 original size:26 final size:26
Alignment explanation
Indices: 25969646--25969698 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25969636 CCAGTCTGAT
25969646 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
25969672 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25969698 C
1 C
25969699 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25970051 original size:26 final size:26
Alignment explanation
Indices: 25970001--25970053 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25969991 CCGGTTCGAT
**
25970001 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25970027 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25970053 C
1 C
25970054 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25970213 original size:675 final size:674
Alignment explanation
Indices: 25968812--25970444 Score: 2770
Period size: 675 Copynumber: 2.4 Consensus size: 674
25968802 GGTCCGAGTG
* * * ** **
25968812 GGGCTTAGACATGGAATG-AGCTCCC-TATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGC
1 GGGCTTAGACGTGGAATGTA-C-CCCATATGCCTAAACCAACCCATGAAACTAGCACGCGGGCGC
** * * * ** * * * * **
25968875 TCAGTTGGCCGGAGAGGCAGAATACGTAAATCGAGGATCGGCCT-GATCTCCCTGCGTGCTACCG
64 TCAGCCGGCTGGAGAGTCAGAATGCGTAAGCCAAGGACCGGCCTGGTTCCCCCTGCGTGCTGTCG
* * ** * * * *
25968939 GTCCTGCTACCGCAACCCTCGGT-CTGATCCGATGTTAGACTAGGAATGAACTCCGTATGCTTAG
129 ATCCTACTGTCGCAACCCTCGATCCAG-TCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAG
25969003 ACTAGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGTGCTCAACCAACC
193 ACTAGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGTGCTCAACCAACC
25969068 GGAAAGGCATAATGCGCAAGCCGAGGATCAGCACGATCCCCCTCTGCATTCTGTCGATCCCGCTG
258 GGAAAGGCATAATGCGCAAGCCGAGGATCAGCACGATCCCCCTCTGCATTCTGTCGATCCCGCTG
25969133 CCGATCCTGCTGCCATAACCCTCGATCCGACTAGGGCTTAGACATGGAATGTACTCTGTATGCCT
323 CCGATCCTGCTGCCATAACCCTCGATCCGACTAGGGCTTAGACATGGAATGTACTCTGTATGCCT
25969198 AAGCCAACCTACGAAACGAACGTGCGGGCCCTCAGTCGATCGAGAGTTAGAATGCGCAAGCCGGG
388 AAGCCAACCTACGAAACGAACGTGCGGGCCCTCAGTCGATCGAGAGTTAGAATGCGCAAGCCGGG
25969263 GATTGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGTAACCCTCGATCCGGTTCGATCT
453 GATTGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGTAACCCTCGATCCGGTTCGATCT
25969328 TAGACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAT
518 TAGACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAT
25969393 GAAACGAGTCTACGGGCGCTCAGCCGACCGGAGAGGCCGGTCAGAGAGGCATAATGCGCAAGCCG
583 GAAACGAGTCTACGGGCGCTCAGCCGACCGGAGAGGCCGGTCAGAGAGGCATAATGCGCAAGCCG
25969458 AGGATCAGCCCGATCCCCCTCTGACTT
648 AGGATCAGCCCGATCCCCCTCTGACTT
25969485 GGGCTTAGACGTGGAATGTACCCCATATGCCTAAACCAACCCATGAAACTAGCACGCGGGCGCTC
1 GGGCTTAGACGTGGAATGTACCCCATATGCCTAAACCAACCCATGAAACTAGCACGCGGGCGCTC
*
25969550 AGCCAGCTGGAGAGTCAGAATGCGTAAGCCAAGGACCGGCCTGGTTCCCCCTGCGTGCTGTCGAT
66 AGCCGGCTGGAGAGTCAGAATGCGTAAGCCAAGGACCGGCCTGGTTCCCCCTGCGTGCTGTCGAT
25969615 CCTACTGTCGCAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
131 CCTACTGTCGCAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
25969680 AGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGTGCTCAACCAACCGGA
196 AGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGTGCTCAACCAACCGGA
25969745 AAGGCATAATGCGCAAGCCGAGGATCAGCACGATCCCCCCTCTGCATTCTGTCGATCCCGCTGCC
261 AAGGCATAATGCGCAAGCCGAGGATCAGCACGAT-CCCCCTCTGCATTCTGTCGATCCCGCTGCC
*
25969810 GATCCTGCTGCCATAACCCTCGATCCGACTAGGGCTTAGACATGGGATGTACTCTGTATGCCTAA
325 GATCCTGCTGCCATAACCCTCGATCCGACTAGGGCTTAGACATGGAATGTACTCTGTATGCCTAA
25969875 GCCAACCTACGAAACGAACGTGCGGGCCCTCAGTCGATCGAGAGTTAGAATGCGCAAGCCGGGGA
390 GCCAACCTACGAAACGAACGTGCGGGCCCTCAGTCGATCGAGAGTTAGAATGCGCAAGCCGGGGA
*
25969940 TTGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGTAACCCTCGATCCGGTTCGATCTTA
455 TTGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGTAACCCTCGATCCGGTTCGATCTTA
25970005 GACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGA
520 GACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGA
* *
25970070 AACGAGTGTACGGGCGCTCAGTCGACCGGAGAGGCCGGTCAGAGAGGCATAATGCGCAAGCCGAG
585 AACGAGTCTACGGGCGCTCAGCCGACCGGAGAGGCCGGTCAGAGAGGCATAATGCGCAAGCCGAG
25970135 GATCAGCCCGATCCCCCTCTGACTT
650 GATCAGCCCGATCCCCCTCTGACTT
25970160 GGGCTTAGACGTGGAATGTACCCCATATGCCTAAACCAACCCATGAAACTAGCACGCGGGCGCTC
1 GGGCTTAGACGTGGAATGTACCCCATATGCCTAAACCAACCCATGAAACTAGCACGCGGGCGCTC
25970225 AGCCGGCTGGAGAGTCAGAATGCGTAAGCCAAGGACCGGCCTGGTTCCCCCTGCGTGCTGTCGAT
66 AGCCGGCTGGAGAGTCAGAATGCGTAAGCCAAGGACCGGCCTGGTTCCCCCTGCGTGCTGTCGAT
*
25970290 CCTACTGTCGCAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGGCT
131 CCTACTGTCGCAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
* ** * * ** * * *
25970355 GGGGATGAACCCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGA
196 AGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGTGCTCAACCAACCGGA
* * **
25970420 GAGACAGGATGCGCAAGCCGAGGAT
261 AAGGCATAATGCGCAAGCCGAGGAT
25970445 TGAACGGGTG
Statistics
Matches: 906, Mismatches: 49, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
672 3 0.00
673 84 0.09
674 172 0.19
675 647 0.71
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (674 bp):
GGGCTTAGACGTGGAATGTACCCCATATGCCTAAACCAACCCATGAAACTAGCACGCGGGCGCTC
AGCCGGCTGGAGAGTCAGAATGCGTAAGCCAAGGACCGGCCTGGTTCCCCCTGCGTGCTGTCGAT
CCTACTGTCGCAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
AGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGTGCTCAACCAACCGGA
AAGGCATAATGCGCAAGCCGAGGATCAGCACGATCCCCCTCTGCATTCTGTCGATCCCGCTGCCG
ATCCTGCTGCCATAACCCTCGATCCGACTAGGGCTTAGACATGGAATGTACTCTGTATGCCTAAG
CCAACCTACGAAACGAACGTGCGGGCCCTCAGTCGATCGAGAGTTAGAATGCGCAAGCCGGGGAT
TGGCCCGGTCCCCCCTACGTGCTATCGATCCTGCTGCCGTAACCCTCGATCCGGTTCGATCTTAG
ACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
ACGAGTCTACGGGCGCTCAGCCGACCGGAGAGGCCGGTCAGAGAGGCATAATGCGCAAGCCGAGG
ATCAGCCCGATCCCCCTCTGACTT
Found at i:25971416 original size:158 final size:156
Alignment explanation
Indices: 25971051--25971505 Score: 428
Period size: 158 Copynumber: 2.9 Consensus size: 156
25971041 TATTATATTG
* * ** *
25971051 GGAATGAGCTCCCTATGGCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGTG
1 GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGTCGAT-
* * * * * * * *
25971116 AGGCAGAATGCACAAGCCAAGGATCAACTCGATCCCCCCTGCATGCTGTCGATCTTGCTACCACA
65 AGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCCTGCTGCCACA
* *
25971181 ACCCTCGG-TCCGATCCGATCTTAGACT
130 A-CCTCGGTTCAGATCCGAGCTTAGACT
* * * * * * * * *
25971208 GAGAATGAACTCCGTATACATAAGTCAACCCAAGAAACAAGCGTGTGGGCACTGAGCCGGTCGAA
1 G-GAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGTCG-A
* * * *
25971273 TAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTACATGCTGTCGGTCCCGCTGCCA
64 TAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCC-CTACATGCTGTCGATCCTGCTGCCA
* * *
25971338 CAACCTCGGTTCAGCT-GGGGCTTAGACAT
128 CAACCTCGGTTCAGATCCGAGCTTAGAC-T
* * * *
25971367 GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCACTCAGCCAGTCGGAG
1 GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGTC-GAT
* * * * * * ** *
25971432 AGGCAGAATGCGTAAGTCAGAGATCGGCCCAGTCCCCCCTACGTGCTACCGATCCTGCTGCCGCA
65 AGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCCTGCTGCCACA
25971497 ACGCTCGGT
130 AC-CTCGGT
25971506 CTGGTCCAAT
Statistics
Matches: 234, Mismatches: 57, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
157 24 0.10
158 179 0.76
159 31 0.13
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (156 bp):
GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGTCGATA
GGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCCTGCTGCCACAA
CCTCGGTTCAGATCCGAGCTTAGACT
Found at i:25971913 original size:26 final size:26
Alignment explanation
Indices: 25971884--25971936 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25971874 CCGGTCCGAT
25971884 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
25971910 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
25971936 C
1 C
25971937 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:25972961 original size:159 final size:157
Alignment explanation
Indices: 25972629--25973035 Score: 451
Period size: 159 Copynumber: 2.6 Consensus size: 157
25972619 AGCTTCGTAT
* * *
25972629 GCTTAGAGATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTG-GGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * ** * **
25972693 CCGATCAGAGGA-GTAGAATGCACAAGCCGGGGATCAACCCGATCCCCCCTGCATGCTGTTGATC
66 CCGA-CTGAAGAGGCA-AATGCGTAAGCAGGGGATCAACCCGATCCCCCCTGCATGCTGCCGATC
** *
25972757 CTGCTGCCACAACCCTCGGTCCAATTCAA
129 CCACTGCCACAACCCTCGGTCCAACTCAA
* * * * *
25972786 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * *
25972850 GCCGACTGAAGAGGCATAATGCGTAAGCAGGGGATCAACCCGGTCCCCCTTTGCATGCTGCCGGT
65 GCCGACTGAAGAGGCA-AATGCGTAAGCAGGGGATCAACCCGATCCCCC-CTGCATGCTGCCGAT
* ** ***
25972915 CCCACTGCCACAACCCTCGGTTCGGCTGGG
128 CCCACTGCCACAACCCTCGGTCCAACTCAA
* * *
25972945 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* *
25973010 CCGACTGGAGAGGCAAATGTGTAAGC
66 CCGACTGAAGAGGCAAATGCGTAAGC
25973036 CAAAGATCGA
Statistics
Matches: 206, Mismatches: 39, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
156 1 0.00
157 51 0.25
158 52 0.25
159 101 0.49
160 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.27, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGACTGAAGAGGCAAATGCGTAAGCAGGGGATCAACCCGATCCCCCCTGCATGCTGCCGATCCC
ACTGCCACAACCCTCGGTCCAACTCAA
Found at i:25973139 original size:26 final size:26
Alignment explanation
Indices: 25973103--25973155 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25973093 CCAGTCCGAT
* *
25973103 CTTATACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25973129 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25973155 C
1 C
25973156 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25973497 original size:355 final size:354
Alignment explanation
Indices: 25972787--25973582 Score: 892
Period size: 355 Copynumber: 2.3 Consensus size: 354
25972777 CCAATTCAAT
* * * * * * * *
25972787 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGTTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
* * * * * ** *
25972852 CGA-CTGAAGAGGCATAATGCGTAAGCAGGGGATCAACCCGGTCCCCCTTTGCATGC---TG---
66 CGACCAG-AGAGGCAGAATGCGCAAGCCGAGGATCAACCTAGTCCCCCTCTGCATGCTGTTGATC
* *
25972910 CCGGTCCCA---CTG---CCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAGCTCCCT
130 CCGCTGCCAGTCCTGCTACCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAGCTCCCT
* * * * *
25972969 ATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGCCGACTGGAGAGGCAAATGTGTAA
195 ATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAGCCGACTGAAAAGGCAAATGTGTAA
* * * * * *
25973034 GCCAAAGATCGACCCGGTCCCCCCTGCGTGCCGTCGATTCTGTTGTCGTAACCCTCGGTCCAGTC
260 GCCAAAGATCGACCCGATCCCCCCTACGTGCCGTCGATGCTGCTGTCGCAACCCTCGATCCAGTC
* *
25973099 CGATCTTATACTGGGAATGAACTTCGTATG
325 CGATCTTAGACTAGGAATGAACTTCGTATG
*
25973129 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
* * * *
25973194 CAGTCGA-AGAGGCATAATGCGCAAGTCGAGGATCAACCTAGTCCCCCTCTGCATGCTGTTGATC
66 C-GACCAGAGAGGCAGAATGCGCAAGCCGAGGATCAACCTAGTCCCCCTCTGCATGCTGTTGATC
25973258 CCGCTGCCAGTCCTGCTACCACAACCCTCGG-TCTGG-TAGGGGCTTAGACATGGAATGTA-CTC
130 CCGCTGCCAGTCCTGCTACCACAACCCTCGGTTC-GGCT-GGGGCTTAGACATGGAATG-AGCTC
* * * * * * *
25973320 CGTATGCCTAGGCCAACCCATGAAACGAGCGTACGGGCACTCAGTCG-GTCGAAAAGGTAGAATG
192 CCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAGCCGACT-GAAAAGGCA-AATG
* * * * * *
25973384 TGTAATCCGAGGATTGACCCGATCCCCCCTATGTGCTGTCGATGCTGCTGTCGCAACCCTCGATC
255 TGTAAGCCAAAGATCGACCCGATCCCCCCTACGTGCCGTCGATGCTGCTGTCGCAACCCTCGATC
25973449 CAGTCCGATCTTAGACTAGGAATGAAC-TCTGTATG
320 CAGTCCGATCTTAGACTAGGAATGAACTTC-GTATG
* * * * *
25973484 CTTAGATTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
*
25973549 CGACCAGAGAGGCAGGATGCGCAAGCCGAGGATC
66 CGACCAGAGAGGCAGAATGCGCAAGCCGAGGATC
25973583 GAACGGGTGG
Statistics
Matches: 375, Mismatches: 58, Indels: 29
0.81 0.13 0.06
Matches are distributed among these distances:
342 99 0.26
343 1 0.00
345 2 0.01
348 7 0.02
351 3 0.01
353 4 0.01
354 87 0.23
355 172 0.46
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (354 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
CGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCAACCTAGTCCCCCTCTGCATGCTGTTGATCC
CGCTGCCAGTCCTGCTACCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAGCTCCCTA
TGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAGCCGACTGAAAAGGCAAATGTGTAAG
CCAAAGATCGACCCGATCCCCCCTACGTGCCGTCGATGCTGCTGTCGCAACCCTCGATCCAGTCC
GATCTTAGACTAGGAATGAACTTCGTATG
Done.