Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 268 of 402
Found at i:25974208 original size:26 final size:25
Alignment explanation
Indices: 25974179--25974237 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
25974169 GGCTCAAAAT
*
25974179 CTTAAGCTGGGAATGAGCTCCGTATG
1 CTTAAGCT-GGAATGAACTCCGTATG
*
25974205 CTTAGAGATGGAATGAACTCCGTATG
1 CTTA-AGCTGGAATGAACTCCGTATG
*
25974231 CCTAAGC
1 CTTAAGC
25974238 CAACCCACGA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 2 0.07
26 23 0.82
27 3 0.11
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (25 bp):
CTTAAGCTGGAATGAACTCCGTATG
Found at i:25974558 original size:159 final size:158
Alignment explanation
Indices: 25974204--25974635 Score: 437
Period size: 159 Copynumber: 2.7 Consensus size: 158
25974194 AGCTCCGTAT
* * * * *
25974204 GCTTAGAGATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-GGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGTGTGCGGGCGCTAAA
* * * *
25974268 CCGGTCGAAGGGGTAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCC
* ***
25974333 TGCTGTGACAACCCTCGGTCCAATACGA
131 CGCTACCACAACCCTCGGTCCAATACGA
* * *
25974361 TCTTAGAC-TGGGAATGAACTCCGTACGCATAAGTCAACCCACGAAACGAGTGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGTGTGCGGGCGCTAA
* * * * *
25974425 ACCGGTCGAAGAGGCATAATGCGTAAGCGGGGGATC-AGCCCAGTCCCCCTCTGCATGCTGTTGG
65 ACCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCAGTCCCCC-CTGCATGCTGTCGA
* * *
25974489 TCCCGCTACCACAACCCTCGGTCCGACT-GGG
128 TCCCGCTACCACAACCCTCGGTCC-AATACGA
* * * * * * * *
25974520 GCTTAGACATGGAATGAGCTCCCTATGCGTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGTGTGCGGGCGCTAAA
* * * *
25974585 CTGG-CTGGAGAGGCA-AATGTGCAAGCCGAGGATCGACCC-GATCCCCCCTGC
66 CCGGTC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAG-TCCCCCCTGC
25974636 GTGCCGCCAA
Statistics
Matches: 225, Mismatches: 41, Indels: 18
0.79 0.14 0.06
Matches are distributed among these distances:
156 1 0.00
157 52 0.23
158 73 0.32
159 96 0.43
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGTGTGCGGGCGCTAAA
CCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAGTCCCCCCTGCATGCTGTCGATCC
CGCTACCACAACCCTCGGTCCAATACGA
Found at i:25975656 original size:26 final size:26
Alignment explanation
Indices: 25975627--25975694 Score: 109
Period size: 26 Copynumber: 2.6 Consensus size: 26
25975617 TCTCAGACTG
*
25975627 GGAATGAGCTCCGTATGCTTAGATAT
1 GGAATGAACTCCGTATGCTTAGATAT
25975653 GGAATGAACTCCGTATGCTTAGATAT
1 GGAATGAACTCCGTATGCTTAGATAT
* *
25975679 AGAATGAACTCTGTAT
1 GGAATGAACTCCGTAT
25975695 CCCTAAGCCA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGATAT
Found at i:25976000 original size:159 final size:158
Alignment explanation
Indices: 25975680--25976169 Score: 499
Period size: 159 Copynumber: 3.1 Consensus size: 158
25975670 CTTAGATATA
* * * * * * * * * *
25975680 GAATGAACTCTGTATCCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCAGTCGGAGA
1 GAATGAACTCCGTATACATAAGCAAACCCACAAAACGAGCGTGCGGGCACTCAGCCA-CCCGAGA
*** * * * *
25975745 GGCAGAATGCGCAA-ATGGGGATCGACCCAGTCCCCCCCTGTGTGCTATCGATCCTGCTGCCACA
65 GGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACA
25975809 ACCCTCAGTCCGGTCTGATCTTAGACTAG
130 ACCCTCAGTCCGGTCTGATCTTAGACTAG
* * * *
25975838 GAATGAACTCCGTATACATAAGTC-AGCCCACAAAACGAGCGTGCGGGCGCTGAGCTGA-CCGAA
1 GAATGAACTCCGTATACATAAG-CAAACCCACAAAACGAGCGTGCGGGCACTCAGC-CACCCG-A
* * ** *
25975901 GAGGCATAATGCTG-AAGTCAGGGATCGGTCCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGCC
63 GAGGCAGAATGC-GCAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCC
* * *
25975965 ACAACCTTCAGTCCGG-CTTGAGCTTTGAC-ATG
127 ACAACCCTCAGTCCGGTC-TGATCTTAGACTA-G
* * * * *
25975997 GAATGAGCTCCCTATGCCTAAGCAAACCCACGAAACGAGCGTGCGGGCACTCAGCCACCCCGAGA
1 GAATGAACTCCGTATACATAAGCAAACCCACAAAACGAGCGTGCGGGCACTCAGCCA-CCCGAGA
* * *
25976062 GGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCT-TGCGTGCTGCCGATCCTACTGTCACA
65 GGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACA
* * *
25976126 ACCCTCGGTGCGGTCTGATCTTAGACTGG
130 ACCCTCAGTCCGGTCTGATCTTAGACTAG
25976155 GAATGAACTCCGTAT
1 GAATGAACTCCGTAT
25976170 GCTTAGACTG
Statistics
Matches: 270, Mismatches: 49, Indels: 26
0.78 0.14 0.08
Matches are distributed among these distances:
157 2 0.01
158 119 0.44
159 146 0.54
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (158 bp):
GAATGAACTCCGTATACATAAGCAAACCCACAAAACGAGCGTGCGGGCACTCAGCCACCCGAGAG
GCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAA
CCCTCAGTCCGGTCTGATCTTAGACTAG
Found at i:25976181 original size:26 final size:26
Alignment explanation
Indices: 25976145--25976195 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
25976135 GCGGTCTGAT
25976145 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25976171 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
25976196 ACCTAGGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25976483 original size:355 final size:360
Alignment explanation
Indices: 25975946--25976948 Score: 1220
Period size: 355 Copynumber: 2.8 Consensus size: 360
25975936 CCCCTCTGCG
* * * * * * *
25975946 TGCTGTCGGTCCTGCTGCCACAACCTTCAGTCCGGCTTGAGCTTTGACATGGAATGAGCTCCCTA
1 TGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGA-CTCCGTA
* * *
25976011 TGCCTAAGCAAACCCACGAAACGAGCGTGCGGGCACTCAGCC-ACCCCGAGAGGCAGAATGCGCA
65 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCGGAGAGGCAGAATGCGCA
* * * * * * * *
25976075 AGCC-AGGGATCGACCCGGTCCCCCTTGCGTGCTGCCGATCCTACTGTCACAACCCTCGGTGCGG
129 AGCCGA-GGATCGGCCCTGTCCCCC-TGTGTGCTGCCGATCTTGCTGTCACAACCCTCGATCCAG
* *
25976139 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAGGT
192 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
* * * *
25976204 CAACCCATGAAACTAGTGTGCGGACGCTCAG-C-C-A-A-CC-G-GAGAGGCATAATGCGTAAGT
257 CAACCCATGAAACGAGCGTGCGGACGCTCAGTCGCGAGAGCCAGCGAGAGGCAAAATGCGCAAGT
* * * **
25976262 CGGGGATTAGCCCGGTTTCCCTCTGCGTGCTGCCGAT-C
322 CGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCC
* *
25976300 TCGCTGTCAGTCCTACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGCACTCCGT
1 T-GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATG-ACTCCGT
* * * * * *
25976365 GTGCCTAAGCCAACCCACGTAATGAGCGTGCGGGCGCTTAGCCGGCCGGAGAGGCAGAATGCGTA
64 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCA
* * *
25976430 AGCCGAGGATCGGCCCTGTCCACCCTGTGTGCTACCGATCTTGCTGCCACAACCCTTGATCCAGT
129 AGCCGAGGATCGGCCCTGTCC-CCCTGTGTGCTGCCGATCTTGCTGTCACAACCCTCGATCCAGT
* * *
25976495 CTGATCTTAGACTGGGAATGCACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTC
193 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
* *
25976560 AACCCATGAAACGAGCGTGCGGGCGCTCTGTCGGTCGGAGAGGCCAGCCAGAGAGGCAAAATGCG
258 AACCCATGAAACGAGCGTGCGGACGCTCAGTC-G-C-GAGA-GCCAG-C-GAGAGGCAAAATGCG
*
25976625 CAAGTCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCC
317 CAAGTCGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCC
** *
25976669 TGCTACCGGTCCTGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGTACTCCGTA
1 TGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATG-ACTCCGTA
* * * *
25976734 TGCCTAAGCCAACCCATGAAACGACCGTGCGGGTGCTCAGCCGACCGGAGAGGCAGAATGCACAA
65 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAA
* * * * * *
25976799 -TCGAGGATC-GACCTGATCCCCCCTGTGTACTGTCGATCTTGCTATCGCAACCCTCGATCCAGT
130 GCCGAGGATCGGCCCTG-T-CCCCCTGTGTGCTGCCGATCTTGCTGTCACAACCCTCGATCCAGT
*
25976862 CTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
193 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
* *
25976927 AACCCACGAAATGAGCGTGCGG
258 AACCCATGAAACGAGCGTGCGG
25976949 GCACTCAGCC
Statistics
Matches: 551, Mismatches: 77, Indels: 29
0.84 0.12 0.04
Matches are distributed among these distances:
354 1 0.00
355 241 0.44
356 6 0.01
359 1 0.00
361 1 0.00
362 1 0.00
364 2 0.00
365 1 0.00
366 5 0.01
367 126 0.23
368 164 0.30
369 2 0.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (360 bp):
TGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGACTCCGTAT
GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG
CCGAGGATCGGCCCTGTCCCCCTGTGTGCTGCCGATCTTGCTGTCACAACCCTCGATCCAGTCTG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
CCATGAAACGAGCGTGCGGACGCTCAGTCGCGAGAGCCAGCGAGAGGCAAAATGCGCAAGTCGAG
GATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCC
Found at i:25976529 original size:26 final size:26
Alignment explanation
Indices: 25976500--25976552 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25976490 CCAGTCTGAT
* *
25976500 CTTAGACT-GGGAATGCACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
25976526 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
25976552 C
1 C
25976553 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:25976903 original size:26 final size:26
Alignment explanation
Indices: 25976867--25976919 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25976857 CCAGTCTGAT
*
25976867 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25976893 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25976919 C
1 C
25976920 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25977626 original size:26 final size:26
Alignment explanation
Indices: 25977588--25977640 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25977578 GGCTTAAAAT
*
25977588 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25977614 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
25977640 C
1 C
25977641 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25978210 original size:158 final size:158
Alignment explanation
Indices: 25977614--25978443 Score: 639
Period size: 158 Copynumber: 5.2 Consensus size: 158
25977604 GCTCCGTATG
* * * * *
25977614 CTTAGAC-ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * * * * *
25977678 CCGGTCGGAGACGCAGAAAGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCT-TGTTGTCGATC
65 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTG-TGTGCTGTCGATC
* * * *
25977742 CTGCTATCACAACCCTC-AGTCTGGTCCGAT
129 CTGCTGTCGCAACCCTCGA-TCCGGTCTGAT
* * * * * * ** * **
25977772 CCTAGATTGGGAATGAACTCCGTATGCATAAGACAACTCACGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAT
* * * * * * * * *
25977837 CGGTCGAAGAGGCATAAGGCACAAGCCGAGTATCGGCCCGGTCCCCTCTACATGCTACCGATCTT
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCC-C--C-TG-T---G----T
* * * * * **
25977902 GCTGTCGGTCCTGCTGCCTCAACCCTCGAACTGG-CTGGGG
119 GCTGTCGATCCTGCTGTCGCAACCCTCGATCCGGTCT-GAT
* * * * * *
25977942 CTTACAC-ATGGAATGTACTTCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
** * * *
25978006 TCGGCCGGAGAGGCAGAATGCGCAAGTTGGGGATCGGCCCGGTCCCCCCTGTGTGCTATCGATCC
65 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGTGTGCTGTCGATCC
* * *
25978071 TGGTGTCGTAACCCTCGATCCGATCTGAT
130 TGCTGTCGCAACCCTCGATCCGGTCTGAT
* * * * **
25978100 CTTAGACTAGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTACGGGCACTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAT
* * * * * * * *
25978165 CAGCCGAAGAGGCATAACGCGTAAGCCGGGGATCGGCTCGATCCCCCTTTGTGTACTGTCGGTCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCC-CTGTGTGCTGTCGATCC
* * * **
25978230 TGCTGCCCCAACCCTCGATCTGGT-TGGGG
130 TGCTGTCGCAACCCTCGATCCGGTCT-GAT
* * * *
25978259 CTTAGAC-ATGCAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * *
25978323 TCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATCC
65 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGTGTGCTGTCGATCC
* * * * *
25978388 TGCTATCGCAACCCTTGGTCCGGTCCGCT
130 TGCTGTCGCAACCCTCGATCCGGTCTGAT
25978417 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
25978444 TTAGACTGGG
Statistics
Matches: 517, Mismatches: 132, Indels: 46
0.74 0.19 0.07
Matches are distributed among these distances:
158 259 0.50
159 131 0.25
161 1 0.00
162 5 0.01
165 1 0.00
166 2 0.00
167 1 0.00
169 2 0.00
170 114 0.22
171 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAT
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGTGTGCTGTCGATCCT
GCTGTCGCAACCCTCGATCCGGTCTGAT
Found at i:25978357 original size:317 final size:322
Alignment explanation
Indices: 25977613--25978446 Score: 991
Period size: 328 Copynumber: 2.6 Consensus size: 322
25977603 AGCTCCGTAT
** * * *
25977613 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACAGGCGCTCAA
1 GCTTAGACATGGAATG-ACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * *
25977678 CCGGTCGGAGACGCAGAAAGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCT-TGTTGTCGATC
65 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTG-TGTGCTGTCGATC
* * * * * *
25977742 CTGCTATCACAACCCTC-AGTCTGGTCCGATCCTAGATTGGGAATGAACTCCGTATGCATAAGAC
129 CTGCTATCGCAACCCTCGA-TCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAAGAC
* * ** * * * *
25977806 AACTCACGAAACGAGCGTGCGGGTGCTGAGCCGGTCGAAGAGGCATAAGGCACAAGCCGAGTATC
193 AACCCACGAAACGAGCGTACGGGCACTGAGCCAGCCGAAGAGGCATAACGCACAAGCCGAGGATC
* * * *
25977871 GGCCCGGTCCCCTCTACATGCTACCGATCTTGCTGTCGGTCCTGCTGCCTCAACCCTCGAACTGG
258 GGCCCGATCCCCTCT--AT-CT--CGATCGTACTGTCGGTCCTGCTGCCCCAACCCTCGAACTGG
25977936 CTGGG
318 CTGGG
* * *
25977941 GCTTACACATGGAATGTACTTCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATG-ACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
** * *
25978006 TCGGCCGGAGAGGCAGAATGCGCAAGTTGGGGATCGGCCCGGTCCCCCCTGTGTGCTATCGATCC
65 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTGTCGATCC
* * * * * *
25978071 TGGTGTCGTAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAAGTCAA
130 TGCTATCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAAGACAA
** *
25978136 CCCACGAAACGAGCGTACGGGCACTGAGCCAGCCGAAGAGGCATAACGCGTAAGCCGGGGATCGG
195 CCCACGAAACGAGCGTACGGGCACTGAGCCAGCCGAAGAGGCATAACGCACAAGCCGAGGATCGG
* * *
25978201 CTCGATCCCC-CT-T-T-G-T-GTACTGTCGGTCCTGCTGCCCCAACCCTCGATCTGGTTGGG
260 CCCGATCCCCTCTATCTCGATCGTACTGTCGGTCCTGCTGCCCCAACCCTCGAACTGGCTGGG
* * * *
25978258 GCTTAGACATGCAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGA-CTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * *
25978323 TCGGCCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTGCCGATCC
65 TCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTGTCGATCC
* * *
25978388 TGCTATCGCAACCCTTGGTCCGGTCCGCTCTTAGACTAGGAATGAACTCCGTATGCTTA
130 TGCTATCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTA
25978447 GACTGGGGAT
Statistics
Matches: 431, Mismatches: 72, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
316 1 0.00
317 200 0.46
318 1 0.00
319 1 0.00
322 1 0.00
324 1 0.00
327 3 0.01
328 222 0.52
329 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (322 bp):
GCTTAGACATGGAATGACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAT
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGCTGTCGATCCT
GCTATCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAAGACAAC
CCACGAAACGAGCGTACGGGCACTGAGCCAGCCGAAGAGGCATAACGCACAAGCCGAGGATCGGC
CCGATCCCCTCTATCTCGATCGTACTGTCGGTCCTGCTGCCCCAACCCTCGAACTGGCTGGG
Found at i:25978446 original size:26 final size:26
Alignment explanation
Indices: 25978417--25978469 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25978407 CCGGTCCGCT
25978417 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
25978443 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25978469 C
1 C
25978470 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25978814 original size:26 final size:26
Alignment explanation
Indices: 25978785--25978837 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25978775 CCAGTCTGAT
25978785 CTTAGACTG-GGAATGAACTCTGTATG
1 CTTAGACTGAGG-ATGAACTCTGTATG
25978811 CTTAGACTGAGGATGAACTCTGTATG
1 CTTAGACTGAGGATGAACTCTGTATG
25978837 C
1 C
25978838 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCTGTATG
Found at i:25979654 original size:26 final size:26
Alignment explanation
Indices: 25979618--25979670 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25979608 CCGGTCCGAT
*
25979618 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25979644 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25979670 C
1 C
25979671 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25981236 original size:26 final size:26
Alignment explanation
Indices: 25981207--25981259 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25981197 CTAGTCCGAT
25981207 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25981233 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25981259 C
1 C
25981260 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25982902 original size:157 final size:158
Alignment explanation
Indices: 25982573--25983024 Score: 381
Period size: 157 Copynumber: 2.9 Consensus size: 158
25982563 CCCTCGATCC
* ** * * * * *
25982573 GACTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGG
1 GACTAGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGG
* * ** * * * * * ** * *
25982638 CGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCGTTGCATGCTA
66 CGCTCAACCGAACGGAGAGGCAGAATGCACAAGCCGAGGATCGACCTGATCCCCCCTGCGTGCTG
* * * * *** *
25982703 TCAATCCTGCTGCTGTAACCCTCAGTCT
131 CCGATCCCGTTGCCACAACCCACAGTCT
* ** * * *
25982731 AGTCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCG
1 -GACTAGGGCTTAGACAT-GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCG
* * * * * * * *
25982794 GGTGTTGAGCCGAAC-GAGAGGCATAATGCACAAGCTGAGGATCGATC-GGTCCCCCTCTGCGTG
64 GGCGCTCAACCGAACGGAGAGGCAGAATGCACAAGCCGAGGATCGACCTGATCCCCC-CTGCGTG
25982857 CTGCCGATCCCGTTGCCACAACCCACAGTCT
128 CTGCCGATCCCGTTGCCACAACCCACAGTCT
* * * *
25982888 GACTAGGGCTTAGACATGGAATGCATTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGG
1 GACTAGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGG
* * * * *
25982953 CGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCTTCGTGCTG
66 CGCTCAACCGAACGGAGAGGCAGAATGCACAAGCCGAGGATCGACCTGATCCCCCCTGCGTGCTG
25983018 CCGATCC
131 CCGATCC
25983025 TACTGTCGCA
Statistics
Matches: 230, Mismatches: 57, Indels: 13
0.77 0.19 0.04
Matches are distributed among these distances:
156 10 0.04
157 111 0.48
158 99 0.43
159 10 0.04
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
GACTAGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGG
CGCTCAACCGAACGGAGAGGCAGAATGCACAAGCCGAGGATCGACCTGATCCCCCCTGCGTGCTG
CCGATCCCGTTGCCACAACCCACAGTCT
Found at i:25983447 original size:26 final size:26
Alignment explanation
Indices: 25983396--25983448 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25983386 CCAGTTTGAT
**
25983396 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
25983422 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
25983448 C
1 C
25983449 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25984454 original size:159 final size:159
Alignment explanation
Indices: 25984163--25984455 Score: 403
Period size: 159 Copynumber: 1.8 Consensus size: 159
25984153 GCTCAGACAT
* * *
25984163 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGATCGGAG
1 GGAATGAACTCCGTATACATAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGATCGAAG
* * *
25984228 AGGCAGAATGCGAAAGTCGGGGATCGACCTGATCTCCCCCTACGTGCTGTCGATCCTGCTACTAC
66 AGGCAGAATGCGAAAGTCAGGGATCGACCTGATCTCCCCCTACGTGCTGCCGATCCTGCTACCAC
25984293 AACCCTCAGTCCGATCCGATCTTAGATTG
131 AACCCTCAGTCCGATCCGATCTTAGATTG
* * * *
25984322 GGAATGAACTCCGTATACATAAGTCAACCCACAAAATGAGCGTGCGGGTGTTGAGCCGA-CTGAA
1 GGAATGAACTCCGTATACATAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGATC-GAA
* * * * *
25984386 GAGGCATAATGCGTAAGTCAGGGATTGGCCTGATC-CCCCTCTACGTGCTGCCGGT-CTCGCTAC
65 GAGGCAGAATGCGAAAGTCAGGGATCGACCTGATCTCCCC-CTACGTGCTGCCGATCCT-GCTAC
25984449 CACAACC
128 CACAACC
25984456 TTCGGTCCCG
Statistics
Matches: 116, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
158 7 0.06
159 109 0.94
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
GGAATGAACTCCGTATACATAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGATCGAAG
AGGCAGAATGCGAAAGTCAGGGATCGACCTGATCTCCCCCTACGTGCTGCCGATCCTGCTACCAC
AACCCTCAGTCCGATCCGATCTTAGATTG
Found at i:25984485 original size:159 final size:159
Alignment explanation
Indices: 25984157--25984535 Score: 392
Period size: 159 Copynumber: 2.4 Consensus size: 159
25984147 CCGTATGCTC
* *
25984157 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGA
1 AGACATGGAATGAACTCCGTATACATAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGA
* * *
25984222 TCGGAGAGGCAGAATGCGAAAGTCGGGGATCGACCTGATCTCCCCCTACGTGCTGTCGATCCTGC
66 TCGAAGAGGCAGAATGCGAAAGTCAGGGATCGACCTGATCTCCCCCTACGTGCTGCCGATCCTGC
* * *
25984287 TACTACAACCCTCAGTCCGATCCGATCTT
131 TACCACAACCCTCAGTCCGATCAGAGCTT
* * * * *
25984316 AGA-TTGGGAATGAACTCCGTATACATAAGTCAACCCACAAAATGAGCGTGCGGGTGTTGAGCCG
1 AGACAT-GGAATGAACTCCGTATACATAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCG
* * * * *
25984380 A-CTGAAGAGGCATAATGCGTAAGTCAGGGATTGGCCTGATC-CCCCTCTACGTGCTGCCGGT-C
65 ATC-GAAGAGGCAGAATGCGAAAGTCAGGGATCGACCTGATCTCCCC-CTACGTGCTGCCGATCC
* * * *
25984442 TCGCTACCACAACCTTCGGTCCCGCT-AGGGCTT
128 T-GCTACCACAACCCTCAGT-CCGATCAGAGCTT
* * * * * ** *
25984475 AGACATGGAATGAGCTCCCTATACCTAGGCCATCCCATGAAAT-AGGCGTGCAGGCGCTCAG
1 AGACATGGAATGAACTCCGTATACATAAGCCAACCCACAAAATGA-GCGTGCGGGCGCTCAG
25984536 TTGGCTAGAG
Statistics
Matches: 178, Mismatches: 35, Indels: 14
0.78 0.15 0.06
Matches are distributed among these distances:
158 9 0.05
159 164 0.92
160 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
AGACATGGAATGAACTCCGTATACATAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGA
TCGAAGAGGCAGAATGCGAAAGTCAGGGATCGACCTGATCTCCCCCTACGTGCTGCCGATCCTGC
TACCACAACCCTCAGTCCGATCAGAGCTT
Found at i:25984661 original size:26 final size:26
Alignment explanation
Indices: 25984632--25984682 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
25984622 GATCTGATCC
*
25984632 TAGACTAGGAATGAACTCTGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
* *
25984658 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
25984683 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:25984956 original size:343 final size:342
Alignment explanation
Indices: 25984313--25985465 Score: 1095
Period size: 343 Copynumber: 3.3 Consensus size: 342
25984303 CCGATCCGAT
* * * * * *
25984313 CTTAGATTGGGAATGAACTCCGTATACATAAGTCAACCCACAAAATGAGCGTGCGGGTGTTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAGC
* * ** * * * *
25984378 C-GACTGAAGAGGCATAATGCGTAAG-TCAGGGATTGGCCTGATCCCCCTCTACGTGCTGCCGGT
66 CGGAC-GGAGAGGCATAATGCGCAAGCTCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGAT
* * * * * * *
25984441 CTCGCTACCACAACCTTCGGTCCCGCTAGGGCTTAGACATGGAATG-AGCTCCCTATACCTAGGC
130 CTTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTA-CTCCCTATGCCTAAGC
* * * * * * * *
25984505 CATCCCATGAAA-TAGGCGTGCAGGCGCTCAGTTGGCTAGAGAGGCAGAATGCGCAATCCGAGGA
194 CAACCCACGAAACGA-GCGTGC-GGCGCTCAGTCGACTGGAGAGGCAGAATGCGCAAGCCGGGGA
* ** * * *
25984569 TCGGCCC-AGTCCCCCCTGCGTGCTACCGATCCTGCTGTCGTAACCTTTGGTCTGATCTGATCCT
257 TCGGCCCGA-TCCCCCCTGCGTGCTGCCGATCCTGCTACCGTAACCCTTGATC-GATCTGATCTT
* *
25984633 AGACTAGGAATGAACTCTGTATG
320 AGACTGGGAATGAACTCCGTATG
* *
25984656 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTACGGGTGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAGC
* * * **
25984721 CGGTCGGAGAGACATAATGCGCAAGCTGA-GGATCAGCCCGATCCCCCTCTGTATGCTGTCGATC
66 CGGACGGAGAGGCATAATGCGCAAGCTCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATC
* * * * *
25984785 TTGCTGCCACAACCCTCGATCCGGTTGGGGCTTAGACGTAGAATGTACTCCTTATGCCTAAGCCA
131 TTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCCTATGCCTAAGCCA
* * *
25984850 ACCCACGAAACGAGCGTACGGACGCTCAGTCGA-TCGGAAAGGCAGAATGCACAAGCCGGGGATC
196 ACCCACGAAACGAGCGTGCGG-CGCTCAGTCGACT-GGAGAGGCAGAATGCGCAAGCCGGGGATC
* * * * *
25984914 GGCCCGATCCCCCCTGCGTGTTGCCAATCCTACTACCGTAACCCTCGATCCGGTCTGATCTTAGA
259 GGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTACCGTAACCCTTGAT-CGATCTGATCTTAGA
* *
25984979 CTGGGAAGGAACTCCATATG
323 CTGGGAATGAACTCCGTATG
* * *
25984999 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGATGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCA--
* *
25985064 CGACCTGAGAGGCCGACTGCAGAGGCATAATGCGCAAGC-CAGGGATCAGCTCGGTCCCCCTCTG
64 -G-CC-G-GA---CG---G-AGAGGCATAATGCGCAAGCTCAGGGATCAGCCCGATCCCCCTCTG
* * *
25985128 CGTGCTGTCGATCCCGCTGCCGGTCCTGCTGCCACAACTCTCGGTCTGACTGGGGCTTAGACATG
118 CGTGCTGTCGA------T--C--T--TGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATG
* * * * *
25985193 GAATGTACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGGTTAATCGACTGGAGA
171 GAATGTACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCAGTCGACTGGAGA
* * * * * *
25985258 GGCAGAATGTGCAAGCCGGGGATCGGCCAGGTCCCCGCTGCGTGCTGTCGATCCTGCTACCGCAA
235 GGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTACCGTAA
* *
25985323 CCCTTGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTACG
300 CCCTTGATCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
25985367 CTTAGACTAGGGATGAA-TGCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGGATGAACT-CCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAG
* * ** *
25985431 TC-GACCAGAGAGGCAGGATGCGCAAGC-CGGGGATC
65 CCGGA-CGGAGAGGCATAATGCGCAAGCTCAGGGATC
25985466 GAACGGGTGG
Statistics
Matches: 662, Mismatches: 110, Indels: 64
0.79 0.13 0.08
Matches are distributed among these distances:
342 3 0.00
343 323 0.49
344 8 0.01
346 1 0.00
347 2 0.00
348 1 0.00
349 1 0.00
352 2 0.00
355 26 0.04
356 48 0.07
359 2 0.00
361 2 0.00
362 1 0.00
364 2 0.00
365 1 0.00
366 1 0.00
367 2 0.00
368 233 0.35
369 3 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (342 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAGC
CGGACGGAGAGGCATAATGCGCAAGCTCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATC
TTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCCTATGCCTAAGCCA
ACCCACGAAACGAGCGTGCGGCGCTCAGTCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGG
CCCGATCCCCCCTGCGTGCTGCCGATCCTGCTACCGTAACCCTTGATCGATCTGATCTTAGACTG
GGAATGAACTCCGTATG
Found at i:25986282 original size:26 final size:26
Alignment explanation
Indices: 25986244--25986296 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25986234 CTAATCTGAT
*
25986244 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
25986270 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
25986296 C
1 C
25986297 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:25988022 original size:185 final size:185
Alignment explanation
Indices: 25987669--25988023 Score: 460
Period size: 185 Copynumber: 1.9 Consensus size: 185
25987659 CTCAAAATCA
25987669 TAGATTGGGAATGAGCTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCAC
1 TAGATTGGGAATGAGCTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCAC
* * * * *
25987734 GAAACAAACGTGCAGGCATTCAGCCGGCTGGAGAGGCACAATGGGCAAGCCGGGGATCGACCTGG
66 GAAACAAACGTACAGGCACTCAGCCGGCTGCAGAGGCACAATGCGCAAGCCAGGGATCGACCTGG
* * ** * **
25987799 TCCCCCCCTGCTTGCTATCGATCCTGCTGCTGCAACCCTCGTTTCGGTCCGATCT
131 TCCCCCCCTACGTGCTATCGATCCCACTACCACAACCCTCGTTTCGGTCCGATCT
* *
25987854 TAGATTGGGAATGAGCTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCAT
1 TAGATTGGGAATGAGCTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCAC
* * * ** * * * *
25987919 GAAACGAGCGTACGGGTGCTGAGCC-GATCGCAGAGGCATAATGCGCAAGTCAGGGATCGACCTG
66 GAAACAAACGTACAGGCACTCAGCCGGCT-GCAGAGGCACAATGCGCAAGCCAGGGATCGACCTG
* * *
25987983 GTCCCCCTCTACGTGCTGTCGGTCCCACTACCACAACCCTC
130 GTCCCCCCCTACGTGCTATCGATCCCACTACCACAACCCTC
25988024 ATTCTGACTG
Statistics
Matches: 143, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
184 2 0.01
185 141 0.99
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (185 bp):
TAGATTGGGAATGAGCTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCAC
GAAACAAACGTACAGGCACTCAGCCGGCTGCAGAGGCACAATGCGCAAGCCAGGGATCGACCTGG
TCCCCCCCTACGTGCTATCGATCCCACTACCACAACCCTCGTTTCGGTCCGATCT
Found at i:25988052 original size:185 final size:185
Alignment explanation
Indices: 25987669--25988063 Score: 427
Period size: 185 Copynumber: 2.1 Consensus size: 185
25987659 CTCAAAATCA
*
25987669 TAGATTGGGAATGAGCTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCAC
1 TAGAATGGGAATGAGCTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCAC
* * * * *
25987734 GAAACAAACGTGCAGGCATTCAGCCGGCTGGAGAGGCACAATGGGCAAGCCGGGGATCGACCTGG
66 GAAACAAACGTACAGGCACTCAGCCGGCTGCAGAGGCACAATGCGCAAGCCAGGGATCGACCTGG
* * ** * ** * * *
25987799 TCCCCCCCTGCTTGCTATCGATCCTGCTGCTGCAACCCTCGTTTCGGTCCGATCT
131 TCCCCCCCTACGTGCTATCGATCCCACTACCACAACCCTCGATTCGGACCGAGCT
* * *
25987854 TAGATTGGGAATGAGCTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCAT
1 TAGAATGGGAATGAGCTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCAC
* * * ** * * * *
25987919 GAAACGAGCGTACGGGTGCTGAGCC-GATCGCAGAGGCATAATGCGCAAGTCAGGGATCGACCTG
66 GAAACAAACGTACAGGCACTCAGCCGGCT-GCAGAGGCACAATGCGCAAGCCAGGGATCGACCTG
* * * * * *
25987983 GTCCCCCTCTACGTGCTGTCGGTCCCACTACCACAACCCTC-ATTCTGACTGGGGCT
130 GTCCCCCCCTACGTGCTATCGATCCCACTACCACAACCCTCGATTCGGAC-CGAGCT
*
25988039 TAGACAT-GGAATGAGCTCCCTATGC
1 TAGA-ATGGGAATGAGCTCCGTATGC
25988064 CTAAGCCAAC
Statistics
Matches: 173, Mismatches: 34, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
184 7 0.04
185 165 0.95
186 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (185 bp):
TAGAATGGGAATGAGCTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCAC
GAAACAAACGTACAGGCACTCAGCCGGCTGCAGAGGCACAATGCGCAAGCCAGGGATCGACCTGG
TCCCCCCCTACGTGCTATCGATCCCACTACCACAACCCTCGATTCGGACCGAGCT
Found at i:25988236 original size:26 final size:26
Alignment explanation
Indices: 25988197--25988250 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
25988187 GATTTGATCT
25988197 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
* **
25988223 TAGACTGGGGATGAACTTTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
25988249 TA
1 TA
25988251 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:25988604 original size:26 final size:26
Alignment explanation
Indices: 25988563--25988615 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
25988553 CTAGTCTGAT
25988563 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25988589 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
25988615 C
1 C
25988616 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25988682 original size:368 final size:358
Alignment explanation
Indices: 25987692--25988907 Score: 1222
Period size: 368 Copynumber: 3.4 Consensus size: 358
25987682 AGCTCCGTAT
* * * * **
25987692 GCTTAGACATGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACAAACGTGCAGGCATTCAG
1 GCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAAGCGCTCAG
** * * * * * *
25987757 CCGGCTGGAGAGGCACAATGGGCAAGCCGGGGATCGACCTGGTCCCCCCCTGCTTGCTATCGATC
66 CCGGCCAGAGAGGCAGAATGAGCAAGCCGGGGATCGGCCCGAT-CCCCCCTGCATGCTATCGATC
* * * * * *
25987822 CTGCTGCTGCAACCCTCGTTTCGGTCCGATCTTAGATTGGGAATGAGCTCCGTATGCTTAGAC-A
130 CTGCTGCCGCAACCCTCG-ATCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
* * *
25987886 TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGC-T-G-AGCC--GA
194 -GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT--GGGGGCTTAGCAACCGAGA
* *
25987946 --TC-GC--AGAGGCATAATGCGCAAGTCAGGGATCGACCT-GGTCCCCCTCTACGTGCTGTCG-
256 GGCCAGCTGAGAGGCATAATGCGCAAGTCAGGGATC-AGCTCGGTCCCCCTCTACGTGCTGTCGA
* *
25988004 -GTCC--C-A--CTAC-CACAACCCTC-ATTCTGACTGGG
320 TCTCCTGCGATCCTACTCACAACCCTCGA-TCCGACTGGG
*
25988036 GCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCAAGCGCTCA
1 GCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAAGCGCTCA
* * * * *
25988100 ACCGGCCAGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATC
65 GCCGGCCAGAGAGGCAGAATGAGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTATCGATC
* * * * *
25988165 CTGCTACCGCAACCATCGATCTGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTG
130 CTGCTGCCGCAACCCTCGATCTG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA
** * * * *
25988230 GGGATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGGGGGCATTCAACCGATCGGAG
194 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGGGGGC-TT--AGC-AACCGAG
* * *
25988295 AGGCCAGTTGAAAAGGCATAATGCGCAAG-CTGGGGATCAGCTCGGTCCCCCTCTACGTGCTGTC
255 AGGCCAGCTG-AGAGGCATAATGCGCAAGTC-AGGGATCAGCTCGGTCCCCCTCTACGTGCTGTC
*
25988359 GATCTCGCTGTCGATCCTACTGTGACAACCCTCGATCCGACTGGG
318 GATCTC-CTG-CGATCCTAC--TCACAACCCTCGATCCGACTGGG
* * * * * * **
25988404 GCTTAGACGTCGAATGTACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAAGCGCTCAG
* * * * * *
25988469 CTGGCCAGAGAGGCAGAATGAGCAAGCCGAGGATTGGCACGATCCCCCCTGCATGCTGTTGATCC
66 CCGGCCAGAGAGGCAGAATGAGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTATCGATCC
25988534 TGCTGCCGCAACCCTCGATCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG
131 TGCTGCCGCAACCCTCGATCT-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG
25988599 GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTTAGCTAACCAGAGA
195 GGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG-GGG-GCTTAGC-AACC-GAGA
* * * * * * *
25988664 GGCCAGCTGGAGAGGCATAATGCGCAAGTCAGGGATCCGCCCGATCCTCTTCTGCGTGCTATCGA
256 GGCCAGCT-GAGAGGCATAATGCGCAAGTCAGGGATCAGCTCGGTCCCCCTCTACGTGCTGTCGA
* * * *
25988729 TCCCACTGCAGGTCGTGCTAC-CACAACCCTCGGTACGACTGGG
320 TCTC-CTGC-GATC---CTACTCACAACCCTCGATCCGACTGGG
* *
25988772 GCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCAG
1 GCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAAGCGCTCAG
* * * * * * *
25988837 TCGGCCGGAGAGGCATAATGCA-TAAGCCGGGGATCAGCCCGATCCCTCTCTGCATGCTGTCGAT
66 CCGGCCAGAGAGGCAGAATG-AGCAAGCCGGGGATCGGCCCGATCCC-CCCTGCATGCTATCGAT
*
25988901 CCCGCTG
129 CCTGCTG
25988908 TCGGTCCTGC
Statistics
Matches: 716, Mismatches: 110, Indels: 67
0.80 0.12 0.08
Matches are distributed among these distances:
341 5 0.01
342 3 0.00
343 110 0.15
344 90 0.13
348 2 0.00
350 2 0.00
352 1 0.00
353 1 0.00
355 4 0.01
356 45 0.06
358 2 0.00
359 1 0.00
362 1 0.00
363 1 0.00
365 4 0.01
367 5 0.01
368 401 0.56
369 32 0.04
370 2 0.00
371 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (358 bp):
GCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAAGCGCTCAG
CCGGCCAGAGAGGCAGAATGAGCAAGCCGGGGATCGGCCCGATCCCCCCTGCATGCTATCGATCC
TGCTGCCGCAACCCTCGATCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGG
GATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGGGGGCTTAGCAACCGAGAGGCCA
GCTGAGAGGCATAATGCGCAAGTCAGGGATCAGCTCGGTCCCCCTCTACGTGCTGTCGATCTCCT
GCGATCCTACTCACAACCCTCGATCCGACTGGG
Found at i:25988957 original size:171 final size:171
Alignment explanation
Indices: 25988672--25989052 Score: 473
Period size: 171 Copynumber: 2.2 Consensus size: 171
25988662 GAGGCCAGCT
* * * *
25988672 GGAGAGGCATAATGCGCAAGTCAGGGATCCGCCCGATCCTCTTCTGCGTGCTATCGATCCCACTG
1 GGAGAGGCATAATGCACAAGCCAGGGATCAGCCCGATCCTCTTCTGCATGCTATCGATCCCACTG
* * *
25988737 CAGGTCGTGCTACCACAACCCTCGGTACGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCT
66 CAGGTCCTGCTACCACAACCCTCGGTACGACTGGGGCATAGACGTGGAATGTACTCCGTAAGCCT
*
25988802 AAGCCAACCCACGAAACGAGCGTGCAAGCGCTCAGTCGGCC
131 AAGCCAACCCACAAAACGAGCGTGCAAGCGCTCAGTCGGCC
* * * *
25988843 GGAGAGGCATAATGCATAAGCCGGGGATCAGCCCGATCC-CTCTCTGCATGCTGTCGATCCCGCT
1 GGAGAGGCATAATGCACAAGCCAGGGATCAGCCCGATCCTCT-TCTGCATGCTATCGATCCCACT
* *
25988907 GTC-GGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCATAGACGTGGAATGTACTCTGTAAGC
65 G-CAGGTCCTGCTACCACAACCCTCGGTACGACTGGGGCATAGACGTGGAATGTACTCCGTAAGC
** * ** * *
25988971 CTAAGCCAATGCACAAAATGAGCGTGCGGGTGCTCAG-CTGGTC
129 CTAAGCCAACCCACAAAACGAGCGTGCAAGCGCTCAGTC-GGCC
* ** *
25989014 GGAGAGGCAAAATGTGCAAGCTAGGGATC-GACCCGATCC
1 GGAGAGGCATAATGCACAAGCCAGGGATCAG-CCCGATCC
25989053 CCCCTGTGGG
Statistics
Matches: 179, Mismatches: 27, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
170 4 0.02
171 174 0.97
172 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.19
Consensus pattern (171 bp):
GGAGAGGCATAATGCACAAGCCAGGGATCAGCCCGATCCTCTTCTGCATGCTATCGATCCCACTG
CAGGTCCTGCTACCACAACCCTCGGTACGACTGGGGCATAGACGTGGAATGTACTCCGTAAGCCT
AAGCCAACCCACAAAACGAGCGTGCAAGCGCTCAGTCGGCC
Found at i:25989087 original size:539 final size:526
Alignment explanation
Indices: 25988308--25989397 Score: 1360
Period size: 539 Copynumber: 2.0 Consensus size: 526
25988298 CCAGTTGAAA
* * * * * *
25988308 AGGCATAATGCGCAAGCTGGGGATCAGCTCGGTCCCCCTCTACGTGCTGTCGATCTCGCTGTCGA
1 AGGCATAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTACATGCTGTCGATCCCGCTGTCGA
*** * *
25988373 TCCTACTGTGACAACCCTCGATCCGACTGGGGCTTAGACGTCGAATGTACTCTGTATGCCTAAGC
66 TCCTACTACCACAACCCTCGATCCGACTGGGGCATAGACGTCGAATGTACTCTGTAAGCCTAAGC
** * *
25988438 CAACCCATGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGAGGCAGAATGAGCAAGCCGAGGAT
131 CAACCCACAAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGAGGCAAAATGAGCAAGCAGAGGAT
* * * * * *
25988503 TGGCACGATCCCCCCTGCATGCTGTTGATCCTGCTGCCGCAACCCTCGA-TCTAG-TCTGATCTT
196 CGACACGATCCCCCCTGCAGGCTGTCGATCCTGCTACCACAACCCTCGATTC-AGTTC-GATCTT
*
25988566 AGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATG
259 AGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACG
* *
25988631 AAACGAGCGTGTGGGCGCTTAGCTAACCAGAGAGGCCAGCTGGAGAGGCATAATGCGCAAGTCAG
324 AAACGAGCGTGCGGGCGC-T--C-AACC-----GG-C--C-GGAGAGGCATAATGCGCAAGCCAG
* * * * * * * *
25988696 GGATCCGCCCGATCCTCTTCTGCGTGCTATCGATCCCACTGC-AGGTCGTGCTACCACAACCCTC
376 GGATCAGCCCGATCCCCCTCTACATGCTATCAATCCCACTACTA-GTCGTGCTACCACAACCCCC
**
25988760 GGTACGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT
440 GGTACGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCAC
* * *
25988825 GCAAGCGCTCAGTCGGCCGGAG
505 GCAAGCACTCAGCCGGCCAGAG
* * * *
25988847 AGGCATAATGCATAAGCCGGGGATCAGCCCGATCCCTCTCTGCATGCTGTCGATCCCGCTGTCGG
1 AGGCATAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTACATGCTGTCGATCCCGCTGTCGA
* * *
25988912 TCCTGCTACCACAACCCTCGGTCCGACTGGGGCATAGACGTGGAATGTACTCTGTAAGCCTAAGC
66 TCCTACTACCACAACCCTCGATCCGACTGGGGCATAGACGTCGAATGTACTCTGTAAGCCTAAGC
** * * * *
25988977 CAATGCACAAAATGAGCGTGCGGGTGCTCAGCTGGTCGGAGAGGCAAAATGTGCAAGCTAG-GGA
131 CAACCCACAAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGAGGCAAAATGAGCAAGC-AGAGGA
* ** * *
25989041 TCGACCCGATCCCCCCTGTGGGCTGTCGATCGTGCTACCACAACCCTCGATTCGGTTCGATCTTA
195 TCGACACGATCCCCCCTGCAGGCTGTCGATCCTGCTACCACAACCCTCGATTCAGTTCGATCTTA
*
25989106 GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
260 GACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
* * *
25989171 AACGAGTGTGCGGGCGCTCAGCCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGTCCGATC
325 AACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATC
* * ** * * * *
25989236 CCCCTCTACATGTTGTCAATCCCGTTACTAGTCTTGCTACCATAACCCCCGGTTCGGCTGGGGCT
390 CCCCTCTACATGCTATCAATCCCACTACTAGTCGTGCTACCACAACCCCCGGTACGACTGGGGCT
**
25989301 TAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCACGCGGGCACTCAGCCG
455 TAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCACGCAAGCACTCAGCCG
25989366 GCCAGAG
520 GCCAGAG
**
25989373 AGGCGGAATGCACAAGCCGGGGATC
1 AGGCATAATGCACAAGCCGGGGATC
25989398 GACCTAGTCC
Statistics
Matches: 475, Mismatches: 72, Indels: 21
0.84 0.13 0.04
Matches are distributed among these distances:
526 170 0.36
527 2 0.00
529 1 0.00
530 2 0.00
535 3 0.01
536 1 0.00
538 1 0.00
539 290 0.61
540 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (526 bp):
AGGCATAATGCACAAGCCGGGGATCAGCCCGATCCCCCTCTACATGCTGTCGATCCCGCTGTCGA
TCCTACTACCACAACCCTCGATCCGACTGGGGCATAGACGTCGAATGTACTCTGTAAGCCTAAGC
CAACCCACAAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGAGGCAAAATGAGCAAGCAGAGGAT
CGACACGATCCCCCCTGCAGGCTGTCGATCCTGCTACCACAACCCTCGATTCAGTTCGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCC
CCCTCTACATGCTATCAATCCCACTACTAGTCGTGCTACCACAACCCCCGGTACGACTGGGGCTT
AGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCACGCAAGCACTCAGCCGG
CCAGAG
Found at i:25989138 original size:26 final size:26
Alignment explanation
Indices: 25989102--25989154 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25989092 TCGGTTCGAT
25989102 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25989128 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25989154 C
1 C
25989155 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25989175 original size:355 final size:353
Alignment explanation
Indices: 25988772--25989932 Score: 1382
Period size: 355 Copynumber: 3.3 Consensus size: 353
25988762 TACGACTGGG
* * * **
25988772 GCTTAGAC-GTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCA
1 GCTTAGACTG-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * * *
25988836 GTCGGCCGGAGAGGCATAATGCATAAGCCGGGGATCAGCCCGATCCCTCTCTGCATGCTGTCGAT
65 G-CGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACATGCTGTCAAT
*
25988901 CCCGCTGTCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCATAGACGTGGAATGTACTCTG
129 CCCGCT-TCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCTG
* ** * * * * * * * *
25988966 TAAGCCTAAGCCAATGCACAAAATGAGCGTGCGGGTGCTCAGCTGGTCGGAGAGGCAAAATGTGC
193 TATGCCTAAGCCAAACCACGAAACGAGCGCGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGC
** * * * * * *
25989031 AAGCTAGGGATCGACCCGATCCCCCCTGTGGGCTGTCGATCGTGCTACCACAACCCTCGATTCGG
258 AAGCCGGGGATCGACCCGATCCCTCCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGA
*
25989096 TTCGATCTTAGACTGGGAATGAACTCCGTAT
323 TCCGATCTTAGACTGGGAATGAACTCCGTAT
*
25989127 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
25989192 CCGGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGTCCGATCCCCCTCTACATGTTGTCAATC
66 -CGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACATGCTGTCAATC
* * * * * * *
25989257 CCG-TTACTAGTCTTGCTACCATAACCCCCGGTTCGGCTGGGGCTTAGACGTGGAATGTACTCCG
130 CCGCTT-C-GGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCTG
* * * * * *
25989321 TATGCCTAAGCCAACCCACGAAACGAGCACGCGGGCACTCAGCCGGCCAGAGAGGCGGAATGCAC
193 TATGCCTAAGCCAAACCACGAAACGAGCGCGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGC
* * * * *
25989386 AAGCCGGGGATCGA-CCTAGTCCCTCCTGTGTCCTATCAATCCAGCTACCGCAACCCTCGATCCG
258 AAGCCGGGGATCGACCCGA-TCCCTCCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCG
*
25989450 ATCCTATCTTAGACTGGGAATGAAGC-CCGTAT
322 ATCCGATCTTAGACTGGGAATGAA-CTCCGTAT
* *
25989482 GGTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
25989547 CTGGCTGGAGAGGCAAAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTACATGCTGCCAATC
66 C-GGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACATGCTGTCAATC
* * * * * *
25989612 TCACTACCGGTCCTGCTGCCACAACCTTCGGTCTGACTGGGGCTTAGACGTGGAATGTACT-TCG
130 CCGCT-TCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCT-G
* ** * * *
25989676 TATGCCTAAGCCAAACCACGAAACAAGCGCGCGCCCGCCCAGCCGACCGGAGAGGCAGAATACGC
193 TATGCCTAAGCCAAACCACGAAACGAGCGCGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGC
* * * *
25989741 AAGCCGGGGATCGGCCCGATCCCTCTTGCGTGCTGTCGATCCTACTACCGCAA-CCTCCGATCCG
258 AAGCCGGGGATCGACCCGATCCCTCCTGTGTGCTGTCGATCCTGCTACCGCAACCCT-CGATCCG
*
25989805 ATCCGATCTTAGACTGGGAATGAACTTCGTAT
322 ATCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
25989837 GCTTAGACTAGGGG-TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTCA
1 GCTTAGACT-GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-
* * ** **
25989901 ACCGACTAGAGAGGCAGGATGCGCAAGCCGGG
64 AGCGGCCGGAGAGGCATAATGCGCAAGCCGGG
25989933 AATCGAACGG
Statistics
Matches: 682, Mismatches: 110, Indels: 28
0.83 0.13 0.03
Matches are distributed among these distances:
353 1 0.00
354 10 0.01
355 658 0.96
356 13 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (353 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTACATGCTGTCAATCC
CGCTTCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCTGTAT
GCCTAAGCCAAACCACGAAACGAGCGCGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAG
CCGGGGATCGACCCGATCCCTCCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGATCC
GATCTTAGACTGGGAATGAACTCCGTAT
Found at i:25989498 original size:26 final size:26
Alignment explanation
Indices: 25989458--25989508 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25989448 CGATCCTATC
25989458 TTAGACTGGGAATGAAGC-CCGTATGG
1 TTAGACTGGGAATGAA-CTCCGTATGG
* *
25989484 TTAGATTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
25989509 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.25, C:0.14, G:0.33, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:25989854 original size:26 final size:26
Alignment explanation
Indices: 25989812--25989864 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
25989802 CCGATCCGAT
*
25989812 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25989838 CTTAGACTAGGG-GTGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
25989864 C
1 C
25989865 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25991126 original size:13 final size:13
Alignment explanation
Indices: 25991108--25991132 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25991098 GGCGCTCAAC
25991108 CGATCGGAGAGGT
1 CGATCGGAGAGGT
25991121 CGATCGGAGAGG
1 CGATCGGAGAGG
25991133 CATAATATGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.48, T:0.12
Consensus pattern (13 bp):
CGATCGGAGAGGT
Found at i:25991722 original size:355 final size:354
Alignment explanation
Indices: 25990833--25991864 Score: 1068
Period size: 355 Copynumber: 2.9 Consensus size: 354
25990823 CCGGTCCCGT
* * *
25990833 TGCCACAACCCTCGATCCGACTGGGGCTTAGACATCAAATGA-GCTCCCTATGCCTAAGCCAACC
1 TGCCACAACCCTCGATCCGGCTGGGGCTTAGACATCGAAT-ATGCTCCATATGCCTAAGCCAACC
* * * * * *
25990897 CACGAAACGGGCGTACGGGCGCTCAGCCGACCGAAGAGGTAGAATGCGCGAGTCGAGGATCGGTT
65 CACGAAATGAGCGTACGGGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAGACGGGGATCGGCT
* * * * * * *
25990962 CGGTCCCTCCTACGTGCTATCGATCCTGTTACAGCAACCCTTGATCTGGTCTGATCTTAGACTGG
130 CGGTCCC-CTTACGTGCTGTCGATCCTGCTACCGCAACCCTTGATCCGATCTGATCTTAGACTAG
* * ** **
25991027 GAATGAACTCCATATGCTTAGATTGGGGATCAACTCCGTATAACTAAGTCAACCCACAAAACGAG
194 GAATGAACTCCGTATGCTTAGATTGGGGATCAACTTCGTATGCCTAAGTCAACCCATGAAACGAG
* ** *
25991092 CGTACGGGCGCTCAACCGATCGGAGAGGTCGATCGGAGAGGCATAATATGCAAGTCGGGGATCAG
259 CGTGCGGGCGCTC-A--G--C--------CGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAG
* * * * *
25991157 CCCGATCCCCCTCTGCGTACTGTCGATCCCGCTGCCAGTCCTGC
311 CCCGATCCCCCTCTACGTACTGCCGATCCCACTACCAGTCCTAC
* * * * * * * *
25991201 TGCCACAACCCTCGTTTCGGCTAGGGCTTAGACATTGAATGTACTCCGTATGCCTAGGCCAACCC
1 TGCCACAACCCTCGATCCGGCTGGGGCTTAGACATCGAATATGCTCCATATGCCTAAGCCAACCC
* * * * *
25991266 AC-AGAATGAGCGTGCGGGCACTCAGCC-AGCCGAAGAGGCAAAATGCTCAAGACGGGGATCGGC
66 ACGA-AATGAGCGTACGGGCGCTCAGCCGA-CCGAAGAGGTAGAATGCGCAAGACGGGGATCGGC
* * * *
25991329 TCGGTCCCTTCTGCGTGCTGTCGATCCTACTGCCGCAACCCTTGATCCGATCTGATCTTAGACTA
129 TCGGTCCCCT-TACGTGCTGTCGATCCTGCTACCGCAACCCTTGATCCGATCTGATCTTAGACTA
* * *
25991394 GGAATGAACTCCGCATGCTTAGATTGGGGATCAATTTCGTATGCCTAAGTCAACCGATGAAACGA
193 GGAATGAACTCCGTATGCTTAGATTGGGGATCAACTTCGTATGCCTAAGTCAACCCATGAAACGA
* * * * *
25991459 GCATGCGGGCGCTCAGCCGGTCGGAGAGGCATAATGCGCAAGCCGAGGATCAGTCCGGTCCCCCT
258 GCGTGCGGGCGCTCAGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCT
* * *
25991524 CTACGTGCTGCCTATCCCACTACCGGTCCTAC
323 CTACGTACTGCCGATCCCACTACCAGTCCTAC
* *
25991556 TGCCACAACCCTC-AGTCCGGCTGGGGTTTAGACATGGAATATGCTCCATATGCCTAAGCCAACC
1 TGCCACAACCCTCGA-TCCGGCTGGGGCTTAGACATCGAATATGCTCCATATGCCTAAGCCAACC
* * * * * * *
25991620 CACGAAATGAGTGTACGGGTGCTCAGCCGATCGAAAAGGTAGAATGCGAAAGCCGGGGATCGAC-
65 CACGAAATGAGCGTACGGGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAGACGGGGATCGGCT
* * *
25991684 CTGGTCCCCATTACGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTAGGCTA
130 C-GGTCCCC-TTACGTGCTGTCGATCCTGCTACCGCAACCCTTGATCCGATCTGATCTTAGACTA
* * * * * * *
25991749 GGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTCGGATGCCTAATTCAACCCATGAAATGA
193 GGAATGAACTCCGTATGCTTAGATTGGGGATCAACTTCGTATGCCTAAGTCAACCCATGAAACGA
** * * * *
25991814 ATGTGCGGGCCCTCATCCGACCAGAGAGGCA-AGATGCGCAAGCCGGGGATC
258 GCGTGCGGGCGCTCAGCCGATCGGAGAGGCATA-ATGCGCAAGCCGGGGATC
25991865 GAATGGGTGG
Statistics
Matches: 549, Mismatches: 105, Indels: 33
0.80 0.15 0.05
Matches are distributed among these distances:
354 2 0.00
355 316 0.58
356 3 0.01
363 1 0.00
365 1 0.00
367 3 0.01
368 223 0.41
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (354 bp):
TGCCACAACCCTCGATCCGGCTGGGGCTTAGACATCGAATATGCTCCATATGCCTAAGCCAACCC
ACGAAATGAGCGTACGGGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAGACGGGGATCGGCTC
GGTCCCCTTACGTGCTGTCGATCCTGCTACCGCAACCCTTGATCCGATCTGATCTTAGACTAGGA
ATGAACTCCGTATGCTTAGATTGGGGATCAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCG
TGCGGGCGCTCAGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTA
CGTACTGCCGATCCCACTACCAGTCCTAC
Found at i:25991792 original size:26 final size:26
Alignment explanation
Indices: 25991740--25991792 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25991730 CCGATCCGAT
* *
25991740 CTTAGGCTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGGATG
*
25991766 CTTAGACTAGGAATGAACTTCGGATG
1 CTTAGACTAGGAATGAACTCCGGATG
25991792 C
1 C
25991793 CTAATTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGGATG
Found at i:25992476 original size:26 final size:26
Alignment explanation
Indices: 25992447--25992498 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25992437 GCTCAAAATA
*
25992447 TTAGAC-TGGGAATGAGCTCCATATGC
1 TTAGACAT-GGAATGAACTCCATATGC
*
25992473 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCATATGC
25992499 CGAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCATATGC
Found at i:25992919 original size:159 final size:156
Alignment explanation
Indices: 25992471--25993046 Score: 431
Period size: 159 Copynumber: 3.6 Consensus size: 156
25992461 AGCTCCATAT
* *
25992471 GCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
25992536 TCAACCGGAGAGGCAGAATGTGCAAGCTGGGGATCC-ATCTGGTCCCCCCTTGTGTGCTGTCGAT
66 CCAACC-GAGAGGCAGAATGCGCAAGC-AGGGATCCGCTC-GGTCCCCTC-TGTGTGCTGTCGAT
* * ** ** *
25992600 CTAGCCTCTACAACCCTCGGTCTGGTTTGA
127 CCAGCCTCCACAACCCTCAATCTGACTGGA
* * * * *
25992630 TCTTAGA-TTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * **
25992694 GCCGACCGAAGAGGCATAACGCGCAAGTCAGGGATCGGCCCGATCCCCCTCTGCCTGCTGTCGAT
65 GCCAACCG-AGAGGCAGAATGCGCAAG-CAGGGATCCGCTCGGT-CCCCTCTGTGTGCTGTCGAT
* *
25992759 CCCG-CTGCCACAACCCTCAATCCT-ACTGGG
127 CCAGCCT-CCACAACCCTCAAT-CTGACTGGA
* * * *
25992789 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
25992854 CCAACCAGAGAGGTAGAATGCGCAAGCAAGGGATCCGCTCGGTCCCCTTCTGTGTGTTGTAGATC
66 CCAACC-GAGAGGCAGAATGCGCAAGC-AGGGATCCGCTCGGTCCCC-TCTGTGTGCTGTCGAT-
* * * * *
25992919 CTGCTACCGGTCCTGCTACCACGACCCTCAGTCCGGCTGGG
127 C--C-A---G--C--CT-CCACAACCCTCAATCTGACTGGA
* * * * ** * *
25992960 GCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCAAGGAAACAAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* *
25993025 TCAGCCAGAGAGGCAGAATGCG
66 CCAACC-GAGAGGCAGAATGCG
25993047 TAAGTCGGGG
Statistics
Matches: 323, Mismatches: 70, Indels: 36
0.75 0.16 0.08
Matches are distributed among these distances:
158 9 0.03
159 208 0.64
160 12 0.04
162 1 0.00
166 1 0.00
170 1 0.00
171 91 0.28
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCAACCGAGAGGCAGAATGCGCAAGCAGGGATCCGCTCGGTCCCCTCTGTGTGCTGTCGATCCAG
CCTCCACAACCCTCAATCTGACTGGA
Found at i:25993070 original size:171 final size:169
Alignment explanation
Indices: 25992766--25993092 Score: 372
Period size: 171 Copynumber: 1.9 Consensus size: 169
25992756 GATCCCGCTG
* *
25992766 CCACAACCCTCAATCCTACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCAAC
*** * * * *
25992831 GAAATGGGCGTGTGGGCGCTCAGCCAACCAGAGAGGTAGAATGCGCAAGCAAGGGATCCGCTCGG
66 GAAACAAGCGTGCGGGCGCTCAACCAACCAGAGAGGCAGAATGCGCAAGCAAGGGATCCGCCCGG
* * *
25992896 TCCCCTTCTGTGTGTTGTAGATCCTGCTACCGGTCCTGCTA
131 TCCCC-CCTGCGTGCTGT-GATCCTGCTACCGGTCCTGCTA
* * * **
25992937 CCACGACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGTA-CTCTGTATGCCTAAGCCAACCAA
1 CCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCAA
* * * * * * *
25993001 GGAAACAAGCGTGCGGGTGCTCAATCAGCCAGAGAGGCAGAATGCGTAAGTC-GGGGA-CTGACC
65 CGAAACAAGCGTGCGGGCGCTCAACCAACCAGAGAGGCAGAATGCGCAAG-CAAGGGATCCG-CC
25993064 CGGTCCCCCCTGCGTGCTGTGATCCTGCT
128 CGGTCCCCCCTGCGTGCTGTGATCCTGCT
25993093 GCCGTAACCC
Statistics
Matches: 129, Mismatches: 24, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
169 9 0.07
170 11 0.09
171 107 0.83
172 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (169 bp):
CCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCAAC
GAAACAAGCGTGCGGGCGCTCAACCAACCAGAGAGGCAGAATGCGCAAGCAAGGGATCCGCCCGG
TCCCCCCTGCGTGCTGTGATCCTGCTACCGGTCCTGCTA
Found at i:25993154 original size:26 final size:26
Alignment explanation
Indices: 25993118--25993170 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25993108 CCAGTTTGAT
25993118 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
25993144 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
25993170 C
1 C
25993171 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:25994370 original size:158 final size:157
Alignment explanation
Indices: 25993867--25994698 Score: 562
Period size: 158 Copynumber: 5.2 Consensus size: 157
25993857 GCTCCGTGTA
* *
25993867 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * *
25993932 TGGCCAGAGAGGCAGAATGTGCAAGTCAGGGATTGACCCGATGCCCCCTATGCGCTGTTGATCAT
66 CGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATTG-GCCGGTCCCCCCTACGTGCTGTCGATCCT
* * * **
25993997 GCTAACGCATCCCTCGGTCTGGTCCAAT
130 GCTACCGCAACCCTCGGTCCGGTCGGAT
* * * * * * * * *
25994025 CTTAGAC-TGGGAATGAACTCCATTTGCATAAGTCAATCCATGAAACGAGTGTGCGTGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
25994089 CCGACCGAAGAGGCATAATGCGTAAGTCAGGGATTGGCCTGGTCCCCCTCTACGTGCTGTCGGTC
65 CCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATTGGCC-GGTCCCCC-CTACGTGCTGTCGATC
** * * * * * * *
25994154 CCACTGCCACAACCGTCAGTCCGATTAGG-G
128 CTGCTACCGCAACCCTCGGTCCG-GTCGGAT
* * * * *
25994184 CTTAGACATGGAATGAGCTCCCTCTGCCTAAGCCAACCCACGAAATG-GACGTGCGGGCACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCAG
* * * * * *
25994248 CCGGTCGGAGAGGCGGAATGCACAAGCCGGGGATTGGTCCGATCCCCCCTACGTGCTGTCGATCC
65 CCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATTGG-CCGGTCCCCCCTACGTGCTGTCGATCC
25994313 TGCTACCGCAACCCTCGGTCCGGTCGGAT
129 TGCTACCGCAACCCTCGGTCCGGTCGGAT
* * * * *
25994342 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCTGGCACTCAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC-A
* * * ** *
25994406 TCGGCCGGAGAGGCCAACTGGAGAGGCATATTGCGTAAGTCAGGGATCAGCCTGGTCCCCCTCTG
64 ---GCC-----GG-C--C-GGAGAGGCAGAATGCGCAAGTCAGGGATTGGCC-GGTCCCCC-CTA
*** * * **
25994471 CGTGCTGTCGATCCTGCTACAATAACCCTTGGTCC-GACTGGGG
115 CGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTC-GGAT
* * ** **
25994514 CTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTATGGGCGCTCAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
25994579 CGGCCGGAGAGGCAGAATGCGTAAG-CCGAGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCT
66 CGGCCGGAGAGGCAGAATGCGCAAGTCAG-GGATTGG-CCGGTCCCCCCTACGTGCTGTCGATCC
* ** * ** **
25994643 TGTTGTCGTAACCCTCGGTTTGGTCTAAT
129 TGCTACCGCAACCCTCGGTCCGGTCGGAT
*
25994672 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
25994699 TTAGACTGGG
Statistics
Matches: 513, Mismatches: 130, Indels: 62
0.73 0.18 0.09
Matches are distributed among these distances:
157 8 0.02
158 223 0.43
159 144 0.28
160 7 0.01
162 4 0.01
163 2 0.00
167 2 0.00
168 1 0.00
170 3 0.01
171 32 0.06
172 86 0.17
173 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATTGGCCGGTCCCCCCTACGTGCTGTCGATCCTG
CTACCGCAACCCTCGGTCCGGTCGGAT
Found at i:25994544 original size:330 final size:316
Alignment explanation
Indices: 25993867--25994698 Score: 876
Period size: 330 Copynumber: 2.6 Consensus size: 316
25993857 GCTCCGTGTA
* * *
25993867 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGACATGGAATG-ACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
25993932 TGGCCAGAGAGGCAGAATGTGCAAGTCAGGGATTGACCCGATGCCCCCTATGCGCTGTTGATCAT
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCCCCCTATGTGCTGTCGATCAT
* ** * *
25993997 GCTAACGCATCCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATTTGCATAAGTCAAT
130 GCTAACGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAAC
* * * * * **
25994062 CCATGAAACGAGTGTGCGTGCGCTGAGCCGACCGAAGAGGCATAATGCGTAAGTCAGGGATTGGC
195 CCACGAAACAAGCGTGCGTGCACTAAGCCGACCGAAGAGGCATAATGCGTAAGTCAGGGATCAGC
* * * * *
25994127 CTGGTCCCCCTCTACGTGCTGTCGGTCCCACTGCCACAACCGTCAGTCCGATTAGGG
260 CTGGTCCCCCTCTACGTGCTGTCGATCCCACTACAACAACCCTCAGTCCGACTAGGG
* * *
25994184 CTTAGACATGGAATGAGCTCCCTCTGCCTAAGCCAACCCACGAAATG-GACGTGCGGGCACTCAG
1 CTTAGACATGGAATGA-CTCCGTATGCCTAAGCCAACCCACGAAATGAG-CGTGCGGGCGCTCAG
* * * * * *
25994248 CCGGTCGGAGAGGCGGAATGCACAAGCCGGGGATTGGTCCGATCCCCCCTACGTGCTGTCGATCC
64 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCCCCCTATGTGCTGTCGATCA
* * ** *
25994313 TGCTACCGCAACCCTCGGTCCGGTCGGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
129 TGCTAACGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAA
* *
25994378 CCCACGAAACAAGCGTGC-TGGCACTCAATCGGCCGGAGAGGCCAACTGGAGAGGCATATTGCGT
194 CCCACGAAACAAGCGTGCGT-GCACT-AA---GCC---GA---C--C-GAAGAGGCATAATGCGT
* ** * **
25994442 AAGTCAGGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACAATAACCCTTGGTCCG
245 AAGTCAGGGATCAGCCTGGTCCCCCTCTACGTGCTGTCGATCCCACTACAACAACCCTCAGTCCG
*
25994507 ACTGGGG
310 ACTAGGG
** **
25994514 CTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTATGGGCGCTCAAT
1 CTTAGACATGGAATG-ACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * * * *
25994579 CGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCTT
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCCCCCTATGTGCTGTCGATCAT
* ** * * *
25994644 GTTGTCGTAACCCTCGGTTTGGTCTAATCTTAGACTGGGAATGAACTCTGTATGC
130 GCTAACGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGC
25994699 TTAGACTGGG
Statistics
Matches: 419, Mismatches: 78, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
316 3 0.01
317 178 0.42
318 1 0.00
321 3 0.01
324 2 0.00
327 1 0.00
329 1 0.00
330 228 0.54
331 2 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (316 bp):
CTTAGACATGGAATGACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGATCCCCCCTATGTGCTGTCGATCATG
CTAACGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACC
CACGAAACAAGCGTGCGTGCACTAAGCCGACCGAAGAGGCATAATGCGTAAGTCAGGGATCAGCC
TGGTCCCCCTCTACGTGCTGTCGATCCCACTACAACAACCCTCAGTCCGACTAGGG
Found at i:25995067 original size:368 final size:356
Alignment explanation
Indices: 25994342--25995143 Score: 892
Period size: 368 Copynumber: 2.2 Consensus size: 356
25994332 CCGGTCGGAT
* * *
25994342 CTTAGACTGGGAATGAACT-CTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCTGGCACTCAA
1 CTTAGACTGGGGATGAACTCCT-TATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCACTCAA
* * * * * *
25994406 TCGGCCGGAGAGGCCAACTGGAGAGGCATATTGCGTAAGTCAGGGATCAGCCTGGTCCCCCTCTG
65 TCGGCCGGAGAGGCCAACTAGAGAGGCATAATACGCAAGTCAGGGATCAGCCCGATCCCCCTCTG
** * *
25994471 CGTGCTGTCGATCCTGCTACAATAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGTACTCCG
130 CGTGCTACCGATCCTGCTACAACAACCCTTGGTCCGACTGGGGCATAGACATGGAATGTACTCCG
* * * * *
25994536 TATGCCTAAGCCAACCCACGAAATGAGCGTATGGGCGCTCAATCGGCCGGAGAGGCAGAATGCGT
195 TATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCGCTCAACCGGCCAGAGAGGCAAAATGCGC
* * ** * * * * * **
25994601 AAGCCGAGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATCTTGTTGTCGTAACCCTCGGTTTGG
260 AAGCCGAGGATCGACCCGATCCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGG
*
25994666 TCTAATCTTAGACTGGGAATGAACTCTGTATG
325 TCTAATCTTAGACTAGGAATGAACTCTGTATG
* * *
25994698 CTTAGACTGGGGATGAACTCCTTATGCCTAAGTTAACCCACGAAACGAGCGTACGGGCACTCAGT
1 CTTAGACTGGGGATGAACTCCTTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCACTCAAT
*** *
25994763 CGGCCGGAGAGGCCGGTTAGAGAGGCATAATACGCAAG-CTGAGGATCAGCCCGATCCCCCTCTG
66 CGGCCGGAGAGGCCAACTAGAGAGGCATAATACGCAAGTCAG-GGATCAGCCCGATCCCCCTCTG
* *
25994827 CGTGCTACCGATCTCCCTGTTGGTCTTACTGCCACAACCCTTGGTCTGACTGGGGCATAGACATG
130 CGTGCTACCGA--T-CC---T-G-C-TA---CAACAACCCTTGGTCCGACTGGGGCATAGACATG
* * * * * *
25994892 GAATGTACTTCGTATGCCTAAGCCAACCCCCGAAACGAGCGTCTGGGTGCTCAGCCGGTCAGAGA
183 GAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCGCTCAACCGGCCAGAGA
* * * *
25994957 GGCAAAATGCGCAAGCTGGGGATCGACCCGATCCCCCTTGCATGTTGTCGATCCTGCTGCCGCAA
248 GGCAAAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTGTCGATCCTGCTGCCGCAA
* *
25995022 CCCTCGATCCGGTTTGATCTTAGACTAGGAATGAACT-TCGTATG
313 CCCTCGATCCGGTCTAATCTTAGACTAGGAATGAACTCT-GTATG
* * * * * *
25995066 CTTAGACTGGGGAT-ACACGCCGTATGCCTAAGTCAACCAACGAAACAAGCATGCGGGCGCTCAA
1 CTTAGACTGGGGATGA-ACTCCTTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCACTCAA
* * *
25995130 CCGACCAGAGAGGC
65 TCGGCCGGAGAGGC
25995144 AGGATGCCCA
Statistics
Matches: 367, Mismatches: 63, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
355 2 0.01
356 116 0.32
357 2 0.01
358 1 0.00
359 2 0.01
362 1 0.00
363 1 0.00
364 1 0.00
365 2 0.01
367 2 0.01
368 237 0.65
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (356 bp):
CTTAGACTGGGGATGAACTCCTTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCACTCAAT
CGGCCGGAGAGGCCAACTAGAGAGGCATAATACGCAAGTCAGGGATCAGCCCGATCCCCCTCTGC
GTGCTACCGATCCTGCTACAACAACCCTTGGTCCGACTGGGGCATAGACATGGAATGTACTCCGT
ATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCGCTCAACCGGCCAGAGAGGCAAAATGCGCA
AGCCGAGGATCGACCCGATCCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGT
CTAATCTTAGACTAGGAATGAACTCTGTATG
Found at i:25995789 original size:26 final size:26
Alignment explanation
Indices: 25995750--25995802 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25995740 GGCTCAAAAT
*
25995750 CTTAGACTGGGAATGAGCTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
** *
25995776 CTTAGACTTTGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
25995802 C
1 C
25995803 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:25996330 original size:26 final size:26
Alignment explanation
Indices: 25996254--25996322 Score: 138
Period size: 26 Copynumber: 2.7 Consensus size: 26
25996244 GGTCCGATCT
25996254 TAGACTGGGGATGAACTTCGTATGCA
1 TAGACTGGGGATGAACTTCGTATGCA
25996280 TAGACTGGGGATGAACTTCGTATGCA
1 TAGACTGGGGATGAACTTCGTATGCA
25996306 TAGACTGGGGATGAACT
1 TAGACTGGGGATGAACT
25996323 CTATATGCCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.26
Consensus pattern (26 bp):
TAGACTGGGGATGAACTTCGTATGCA
Found at i:25996453 original size:24 final size:24
Alignment explanation
Indices: 25996422--25996477 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
25996412 CCCCTGTACG
*
25996422 TGCTGCCAATCCCGTTGCCGGTCC
1 TGCTGCCAATCCCGTTGCCAGTCC
25996446 TGCTGCCAATCCCGTTGCCAGTCC
1 TGCTGCCAATCCCGTTGCCAGTCC
25996470 TGCTGCCA
1 TGCTGCCA
25996478 TAACCCTCGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.11, C:0.41, G:0.23, T:0.25
Consensus pattern (24 bp):
TGCTGCCAATCCCGTTGCCAGTCC
Found at i:25996686 original size:26 final size:26
Alignment explanation
Indices: 25996657--25996709 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25996647 CCGATCCGAT
25996657 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
** *
25996683 CTTAGACTGGGGTTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25996709 C
1 C
25996710 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25997885 original size:158 final size:156
Alignment explanation
Indices: 25997406--25997907 Score: 489
Period size: 158 Copynumber: 3.2 Consensus size: 156
25997396 GCCCCGTATG
* * * * *
25997406 CTTAGACATGGAATA-AACTCCGTATGCCTAAGCCAACTCATGAAACAAGCGTGTGGGCACTCAG
1 CTTAGACATGGAA-AGAACTCCGTATGCCTAAGCTAACCCATGAAACAAGCGTGCGGGCGCTTAG
* *
25997470 CCGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCCCCTGCGTGCTGTCGATC
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCG-CCCGGT-CCCCCCTGCATGCT-TCGATC
* ** *
25997535 CTGCTACTGCAACCCTCAGCCCGGTCCGAT
127 CTGCTGCTGCAACCCTCAATCCGGTCCTAT
* * *
25997565 CTTAGAC-TGGTAATGAACTCCGTATGCATAAG-TCAACCCACGAAACAAGCGTGCGGGCG-TTA
1 CTTAGACATGG-AAAGAACTCCGTATGCCTAAGCT-AACCCATGAAACAAGCGTGCGGGCGCTT-
* ** * * * * * * * *
25997627 AGCCGGTCAAAGAGGCATAATGCGCAAGCCCGGGTTCGGCCCAGTCCCCTTCTACATGCTGCGGT
63 AGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCGGTCCCC-CCTGCATGCTTCGAT
* ** * * *
25997692 CCCGCTGCCACAACCCTCGATCTGG--CTAGGG
126 CCTGCTGCTGCAACCCTCAATCCGGTCCTA--T
* *
25997723 CTTAGACATGGAAAGAGCATCC-TATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCGCTTAG
1 CTTAGACATGGAAAGAAC-TCCGTATGCCTAAGCTAACCCATGAAACAAGCGTGCGGGCGCTTAG
*
25997787 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCATGCTATCGATCC
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCGGTCCCCCCTGCATGCT-TCGATCC
25997852 TGCTGCTGCAACCCTCAATCCGGTCCTAT
128 TGCTGCTGCAACCCTCAATCCGGTCCTAT
* *
25997881 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAAAGAACTCCGTATGC
25997908 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 58, Indels: 35
0.74 0.16 0.10
Matches are distributed among these distances:
156 2 0.01
157 11 0.04
158 154 0.57
159 97 0.36
160 4 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAAAGAACTCCGTATGCCTAAGCTAACCCATGAAACAAGCGTGCGGGCGCTTAGC
CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGCCCGGTCCCCCCTGCATGCTTCGATCCTGC
TGCTGCAACCCTCAATCCGGTCCTAT
Found at i:25997917 original size:26 final size:26
Alignment explanation
Indices: 25997881--25997933 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25997871 CCGGTCCTAT
*
25997881 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
25997907 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
25997933 C
1 C
25997934 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25998100 original size:26 final size:26
Alignment explanation
Indices: 25998071--25998123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25998061 CCGATCCGAT
25998071 CTTAGACT-GAGAATGAACTCCGTATG
1 CTTAGACTAG-GAATGAACTCCGTATG
*
25998097 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
25998123 C
1 C
25998124 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:25998112 original size:190 final size:184
Alignment explanation
Indices: 25997745--25998233 Score: 590
Period size: 190 Copynumber: 2.6 Consensus size: 184
25997735 AAGAGCATCC
* * *
25997745 TATGCCTAAG-CTAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGACCGGAGAGGCAGAATGCG
1 TATGCCTAAGTC-AACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCA
* * *
25997809 CAAGCCGGGGATCAGCCCGGTCCCCCCTGCATGCTATCGATCCTGCTGCTGCAACCCTCAATCCG
65 CAAGCCGAGGATCAGCCCAGTCCCCCCTGCATGCTATCCATCCTGCTGCTGCAACCCTCAATCCG
* * * * *
25997874 GTCCTATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCG
130 ATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCG
* *
25997929 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGTCGCTCAGCCGGCCGAGAGAGGTAGAATGCA
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCG-GAGAGGCAGAATGCA
* * *
25997994 CAAGCCGAGGATC-GACCCAG-CCCTCCCTGCGTGCTATCCATCCTGCT-ATCGTAACCCTCGAT
65 CAAGCCGAGGATCAG-CCCAGTCCC-CCCTGCATGCTATCCATCCTGCTGCT-GCAACCCTC-A-
25998056 CCGATCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCG
125 ---ATCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCG
* * * * *
25998119 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGGCGCTCAGCCGGTCAGAGAAGCATAATGCG
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGC-GGGCGCTCAGCCGGCCGGAGAGGCAGAATGCA
* * * * * * *
25998184 CAGGCCAAGGATCAGCCCGGTCCCTCTCTGCATGCTGTCGATCCCGCTGC
65 CAAGCCGAGGATCAGCCCAGTCCC-CCCTGCATGCTATCCATCCTGCTGC
25998234 CGGTCGTCCT
Statistics
Matches: 259, Mismatches: 32, Indels: 20
0.83 0.10 0.06
Matches are distributed among these distances:
184 49 0.19
185 59 0.23
186 1 0.00
190 113 0.44
191 37 0.14
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (184 bp):
TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCAC
AAGCCGAGGATCAGCCCAGTCCCCCCTGCATGCTATCCATCCTGCTGCTGCAACCCTCAATCCGA
TCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCG
Found at i:25998456 original size:26 final size:26
Alignment explanation
Indices: 25998427--25998479 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
25998417 CTGGTCTGAT
* *
25998427 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
* *
25998453 CTTATACTGGGGATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
25998479 C
1 C
25998480 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:25999553 original size:26 final size:26
Alignment explanation
Indices: 25999517--25999569 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25999507 CCAGTCTGAT
*
25999517 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
**
25999543 CTTAGACTGGGGTTGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
25999569 C
1 C
25999570 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:26000794 original size:158 final size:157
Alignment explanation
Indices: 26000265--26001082 Score: 686
Period size: 159 Copynumber: 5.2 Consensus size: 157
26000255 GTTCCATATG
* * * *
26000265 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * * ** *
26000329 CCGGTCGGAGAGGCAGATTGCTCAAGTCGGGGATCGACCCGGTCCCCCCTATGTGCTGTCGATCC
65 CCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCG-CCCGATCCCCCCTGCGTGCTGCCGATCC
*
26000394 TGCTGCTGTAACCCTCGGTCCGGTCTGAT
129 TGCTGCCGTAACCCTCGGTCCGGTCTGAT
* * * * * * * *
26000423 CTTTGACTTGGAATGAACTTCGTATGCATAAGTCAACCCAGGAAATGAGCGTGCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
26000488 CAACCGAAGAGGC-GTAATGCGCAAGCCTGGGATCGGCCTAGTCCCCCTCTACGAGCTGCCGATC
66 CGACCGGAGAGGCAG-AATGCACAAGCCAGGGATCGCCCGA-TCCCCC-CTGCGTGCTGCCGATC
** * * * * **
26000552 CCACTACCATAATCCTCGATCCGG-CTGGGG
128 CTGCTGCCGTAACCCTCGGTCCGGTCT-GAT
* * *
26000582 CTTAGAC-GTGGAAT-AAGCTCTC-TATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTC
1 CTTAGACTG-GGAATGAA-CT-TCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* *
26000644 AGCTGACCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCTCGATCCCCCCTGCGTGCTGCCGAT
63 AGCCGACCGGAGAGGCAGAATGCACAAGCCAGGGATC-GCCCGATCCCCCCTGCGTGCTGCCGAT
* * *
26000709 CCTGCTGTCGCAACCCTCGGTCTGGTCTGAT
127 CCTGCTGCCGTAACCCTCGGTCCGGTCTGAT
* * * * *
26000740 CTTAGACTGGGAATGAACTTCGTATGCTTAAGTCAACCCACGAAACGAGTGTGCGGGCACTAAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
26000805 CGATCGAAGAGGCATAATGCGCAAGCC-GAGGATCAGCTCGGTCCCCCTCTGCATGCTGCCGGTC
66 CGACCGGAGAGGCAGAATGCACAAGCCAG-GGATC-GCCCGATCCCCC-CTGCGTGCTGCCGATC
** * **
26000869 CTGCTGCCACAACCCTCGGTCTGGT-TGGGG
128 CTGCTGCCGTAACCCTCGGTCCGGTCT-GAT
* * * *
26000899 CTTAGAC-GTGGAATGTAC-TCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGTGCTCA
1 CTTAGACTG-GGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
26000962 GCCGACTGGAAAGGTAGAATGCACAAGCCAGGGATCGACCCGAT-CCCCCTGCGTTCTACCGATC
64 GCCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCG-CCCGATCCCCCCTGCGTGCTGCCGATC
* * *
26001026 CTGCTGTCGTAACCCTCGATCCGGTCCGAT
128 CTGCTGCCGTAACCCTCGGTCCGGTCTGAT
* * *
26001056 CTTAGACTGTGAAAGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTTCGTATGC
26001083 TTAGACTGGG
Statistics
Matches: 521, Mismatches: 115, Indels: 49
0.76 0.17 0.07
Matches are distributed among these distances:
157 59 0.11
158 218 0.42
159 237 0.45
160 7 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGCCCGATCCCCCCTGCGTGCTGCCGATCCTG
CTGCCGTAACCCTCGGTCCGGTCTGAT
Found at i:26000851 original size:317 final size:317
Alignment explanation
Indices: 26000264--26001085 Score: 1003
Period size: 317 Copynumber: 2.6 Consensus size: 317
26000254 AGTTCCATAT
* *
26000264 GCTTAGACATGGAATGAACTC-CATATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCA
1 GCTTAGACGTGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
** * * * * * ** *
26000328 GCCGGTCGGAGAGGCAGATTGCTCAAGTCGGGGATCGACCCGGTCCCCCCTATGTGCTGTCGATC
65 GCCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATC
* * *
26000393 CTGCTG-CTGTAACCCTCGGTCCGGTCTGATCTTTGACTTGGAATGAACTTCGTATGCATAAGTC
130 CTGCTGTC-GTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAAGTC
* * ** * *
26000457 AACCCAGGAAATGAGCGTGCGGGTGCTGAGCCAACCGAAGAGGCGTAATGCGCAAGCCTGGGATC
194 AACCCACGAAACGAGCGTGCGGGCACTAAGCCAACCGAAGAGGCATAATGCGCAAGCCTGGGATC
* * *
26000522 GGCCTAGTCCCCCTCTACGA-GCTGCCGATCCCACTACCATAATCCTCGATCCGGCTGGG
259 AGCCTAGTCCCCCTCTAC-ATGCTGCCGATCCCACTACCACAACCCTCGATCCGGCTGGG
* * * *
26000581 GCTTAGACGTGGAAT-AAGCTCTCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCA
1 GCTTAGACGTGGAATGAA-CTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* *
26000645 GCTGACCGGAGAGGCAGAATGCACAAGCCAGGGATC-AGCTCGATCCCCCCTGCGTGCTGCCGAT
65 GCCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGA-CCCGATCCCCCCTGCGTGCTGCCGAT
* *
26000709 CCTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAAGTC
129 CCTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAAGTC
* * *
26000774 AACCCACGAAACGAGTGTGCGGGCACTAAGCCGATCGAAGAGGCATAATGCGCAAGCC-GAGGAT
194 AACCCACGAAACGAGCGTGCGGGCACTAAGCCAACCGAAGAGGCATAATGCGCAAGCCTG-GGAT
* * * ** * * * *
26000838 CAG-CTCGGTCCCCCTCTGCATGCTGCCGGTCCTGCTGCCACAACCCTCGGTCTGGTTGGG
258 CAGCCT-AGTCCCCCTCTACATGCTGCCGATCCCACTACCACAACCCTCGATCCGGCTGGG
* * * *
26000898 GCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGTGCTCAG
1 GCTTAGACGTGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * *
26000963 CCGACTGGAAAGGTAGAATGCACAAGCCAGGGATCGACCCGAT-CCCCCTGCGTTCTACCGATCC
66 CCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
* * * * *
26001027 TGCTGTCGTAACCCTCGATCCGGTCCGATCTTAGACTGTGAAAGAACTCCGTATGCTTA
131 TGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTA
26001086 GACTGGGGAT
Statistics
Matches: 430, Mismatches: 66, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
316 78 0.18
317 348 0.81
318 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (317 bp):
GCTTAGACGTGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
TGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAAGTCAA
CCCACGAAACGAGCGTGCGGGCACTAAGCCAACCGAAGAGGCATAATGCGCAAGCCTGGGATCAG
CCTAGTCCCCCTCTACATGCTGCCGATCCCACTACCACAACCCTCGATCCGGCTGGG
Found at i:26001085 original size:26 final size:26
Alignment explanation
Indices: 26001056--26001108 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26001046 CCGGTCCGAT
*
26001056 CTTAGACTGTGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* * *
26001082 CTTAGACTGGGGATGAACTCCTTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
26001108 C
1 C
26001109 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:26001277 original size:184 final size:183
Alignment explanation
Indices: 26000898--26001401 Score: 579
Period size: 184 Copynumber: 2.7 Consensus size: 183
26000888 TCTGGTTGGG
* * * * * *
26000898 GCTTAGAC-GTGGAATGTACTCTGTATGCCTAAGCCAACCCA-CGAAACGAGCATGCAGGTGCTC
1 GCTTAGACTG-GGGATGAACTCCGTATGCCTAAGTCAACCCATC-AAACGAGCGTGCAGGCGCTC
* * * *
26000961 AGCCGACTGGAAAGGTAGAATGCACAAGCCAGGGATC-GACCCGAT-CCCCCTGCGTTCTACCGA
64 AGCCGACTGGAGAGGTAGAATGCACAAGCCGGGGATCAG-CCCGATCCCCCCTGCGTGCTGCCGA
**
26001024 TCCTGCTGTCGTAACCCTCGATCCGGTCCGATCTTAGACTGTGAAAGAACTCCGTAT
128 TCCTGCTG-CACAACCCTCGATCCGGTCCGATCTTAGACTGTGAAAGAACTCCGTAT
* *
26001081 GCTTAGACTGGGGATGAACTCCTTATGCCTAAGTCAACCCATCAAACGAGCGTGCAGGCGTTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATCAAACGAGCGTGCAGGCGCTCAG
* * * ** *
26001146 TCG-GTCGGGGAGGTAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATC
66 CCGACT-GGAGAGGTAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGCCGATC
* * * *
26001210 CTGCTGCAACAACCCTCGATCTGGTCTGATCTTAGACTAG-GAATGAACTTCGTAT
130 CTGCTGC-ACAACCCTCGATCCGGTCCGATCTTAGACT-GTGAAAGAACTCCGTAT
* * * *
26001265 GCTTATACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATCAAACGAGCGTGCAGGCGCTCAG
* * ** **
26001330 CCGACTGGAGAGGCATAATAAACAAGCCGGGGATCAGCCCGATCCCCCTCTGTATGCTGCCGATC
66 CCGACTGGAGAGGTAGAATGCACAAGCCGGGGATCAGCCCGATCCCCC-CTGCGTGCTGCCGATC
*
26001395 TTGCTGC
130 CTGCTGC
26001402 CAGTCCTGCT
Statistics
Matches: 269, Mismatches: 43, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
182 1 0.00
183 86 0.32
184 161 0.60
185 21 0.08
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (183 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATCAAACGAGCGTGCAGGCGCTCAG
CCGACTGGAGAGGTAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGCCGATCC
TGCTGCACAACCCTCGATCCGGTCCGATCTTAGACTGTGAAAGAACTCCGTAT
Found at i:26001979 original size:26 final size:26
Alignment explanation
Indices: 26001950--26002002 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26001940 CTGATCCGAT
*
26001950 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26001976 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26002002 C
1 C
26002003 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26001982 original size:356 final size:355
Alignment explanation
Indices: 26001081--26002052 Score: 1223
Period size: 354 Copynumber: 2.7 Consensus size: 355
26001071 AACTCCGTAT
* * * * * * *
26001081 GCTTAGAC-TGGGGATGAACTCCTTATGCCTAAGTCAACCCATCAAACGAGCGTGCAGGCGTTCA
1 GCTTAGACAT-GGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
** * * * * * *
26001145 GTCGGTCGGGGAGGTAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCGATC
65 ACCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGACCGATCCCCCCTACGTGCTGTCGATC
** * * * *
26001210 CTGCTGCAACAACCCTCGATCTGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCTTATACTG
130 CTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * *
26001275 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCGCTCAGCCGACTGGAG
195 GGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGTGCTCAGCCGACCGGAG
* * *
26001340 AGGCATAATAAACAAGCCGGGGATCAGCCCGATCCCCCTCTGTATGCTGCCGATCTTGCTGCCAG
260 AGGCATAATAAACAACCCGGGGATCAGCCCGATCCCCCTCTGCATGCTGCCGATCTCGCTGCCAG
* *
26001405 TCCTGCTGCCACAACCCTCGATCCGGCTGGG
325 TCCTGCTACCACAACCCTCGATCCGACTGGG
* * * * *
26001436 GTTTAGACATGGAATGTACTCCGTATGCCTAAGCAAACCCACGAAACGAGTGTGCGGGCACT-AA
1 GCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
*
26001500 GCC-GCCGGAGAGGCAGAATGCGCAAGCCGGGGA-CCGACTCGATCCCCCCTACGTGCTGTCGAT
66 -CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGAC-CGATCCCCCCTACGTGCTGTCGAT
* ** * * * *
26001563 CCTACTGCCGCAACCCTTAATCTGGTCCGATTTTAGACTGGGACTGGACTCCATATGCTTAGACT
129 CCTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
26001628 GGGGATGAACTTTGTATGCCTAAGTCAACCCATTAAACGAGCGTGCGAGTGCTCAGCTGGCCGGA
194 GGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGTGCTCAGCCGACCGGA
** * * * *
26001693 GAGGCATAATGCACAACCCGGGGATCAGCTCGATCCCCCCTCTGCGTGCTGTCGATCTCGTTGCC
259 GAGGCATAATAAACAACCCGGGGATCAGCCCGAT-CCCCCTCTGCATGCTGCCGATCTCGCTGCC
* * * *
26001758 GGTCCTGCTACCACAACTCTCGGTCTGACTGGG
323 AGTCCTGCTACCACAACCCTCGATCCGACTGGG
* * *
26001791 GCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * **
26001856 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGGCCGATCTCCCCTACGTGCTACCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGACCGATCCCCCCTACGTGCTGTCGATCC
* * *
26001921 TGCTGCCGCATCCCTCGATCTGATCCGATCTTAGACTGGGAATTAACTCCGTATGCTTAGACTGG
131 TGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
26001986 GGATGAACTCTGTATGCCTAAGTCAACCCAGGAAACGAGCGTGCGAATGCTCAGCCGACCAGAGA
196 GGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGTGCTCAGCCGACCGGAGA
26002051 GG
261 GG
26002053 TAGGATGCGT
Statistics
Matches: 521, Mismatches: 89, Indels: 13
0.84 0.14 0.02
Matches are distributed among these distances:
353 3 0.01
354 188 0.36
355 157 0.30
356 170 0.33
357 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (355 bp):
GCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGACCGATCCCCCCTACGTGCTGTCGATCC
TGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGTGCTCAGCCGACCGGAGA
GGCATAATAAACAACCCGGGGATCAGCCCGATCCCCCTCTGCATGCTGCCGATCTCGCTGCCAGT
CCTGCTACCACAACCCTCGATCCGACTGGG
Found at i:26003192 original size:26 final size:26
Alignment explanation
Indices: 26003163--26003218 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
26003153 CCGGTCTGAT
*
26003163 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATC
**
26003189 CTTAGACTGGGGTTGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
26003215 CTTA
1 CTTA
26003219 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:26003873 original size:355 final size:349
Alignment explanation
Indices: 26002967--26003960 Score: 1115
Period size: 355 Copynumber: 2.8 Consensus size: 349
26002957 CCTCTGTGTG
* * **
26002967 CTGTCGGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTA-ACATGGAATG-AGCTCCCTAT
1 CTGTCGGTCCTGCAGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGTA-CTCTGTAT
* ** * * * * *
26003030 GACTAAGCCAACCCATGAAACGTA-CGTGTGGGCGCTCAACCGGTCGGAGAGGCTGAATGCGTAA
65 GCCTAAGCCAACCCACAAAACG-AGCGTGCGGGTGCTCAACAGGTCGGAGAGGCAGAATGCATAA
** * * * * * *
26003094 GCCAAGGATCGACCAGGTCCCCCCTGCATGCTACCGATCCTACTGTTGCAACCCTCGATCCGGTC
129 GCCGGGGATCGACCCGATCCCCCTTGCGTGCT-GCGATCCTACTGTCGCAACCCTCGATCCGGTC
*
26003159 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGTTGAACTCCGTAT-CCTTAAGTC
193 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCC-TAAGTC
* * ** * * *
26003223 AACCCACAAAACGAGCGTGCGAGCACTCAACC-AGTCGGAGAGGGATAATGCACAAGCCAGGGAT
257 AACCCATAAAACGAGCGTGCGGGTGCTCAGCCGAGACGGAGAGGCATAATGCACAAGCCAGGGAT
* * *
26003287 CAGCCCGATCAATGTACTGTCGATCCCG
322 CAGCCCGATCAATGTACTGCCAATCCCA
** * *
26003315 CTACCGGTCCTGCTA-CCACAACCCTTGGTCTGGCTGGAGCTTAGACATGGAATGTACT-TCGTA
1 CTGTCGGTCCTGC-AGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGTACTCT-GTA
* * * * *
26003378 TGCCTCAGCCAACCCACAAAACAAGCGTGCAGGTGCTCAACCA-GCCGGAGAGGCAGAATGCACA
64 TGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAA-CAGGTCGGAGAGGCAGAATGCATA
* * * * *
26003442 AGTCGGGGATCGACTCAATCCCCCTTGTGTGCTGCGGATCCTACTGCCGCAACCCTCGATCCGGT
128 AGCCGGGGATCGACCCGATCCCCCTTGCGTGCTGC-GATCCTACTGTCGCAACCCTCGATCCGGT
* * *
26003507 CTGATCTTAGACTGGGAATGAACTCCGTACGCTTGGACTGGGGCTGAACTCCGTATGCCTAAGTC
192 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
* * * *
26003572 AACCTATGAAACAAGCGTGCGGGTGCTCAGCCGA-ACGGAGAGGCATAATGCCCAAGCCAGGGAT
257 AACCCATAAAACGAGCGTGCGGGTGCTCAGCCGAGACGGAGAGGCATAATGCACAAGCCAGGGAT
* ** * *
26003636 CAGCCCGGTCCCCCTCTTCGTGCTGCCAATCCTA
322 CAGCCCGAT----C-AAT-GTACTGCCAATCCCA
* *
26003670 CTGTCGGTCCTGCAGCCACAACCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTACTCTGTATG
1 CTGTCGGTCCTGCAGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGTACTCTGTATG
* * *
26003735 CCTAAGGCAACCCACAAAATGAGCGTGCGGGTGCTCAGCAGGTCGGAGAGGCAGAATGCATAAGC
66 CCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAACAGGTCGGAGAGGCAGAATGCATAAGC
* * * * * * *
26003800 CGGGGATCGACCCGATCCCTCTTGCGTGCTGTCAATCTTGCTGTCACAACCTTCGACCCGGTCTG
131 CGGGGATCGACCCGATCCCCCTTGCGTGCTG-CGATCCTACTGTCGCAACCCTCGATCCGGTCTG
* * * *
26003865 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAAATCTGTATGCCTAAGTCAGC
195 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* *
26003930 CCGTAAAATGAGCGTGCGGGTGCTCAGCCGA
260 CCATAAAACGAGCGTGCGGGTGCTCAGCCGA
26003961 CCAGGGAGGC
Statistics
Matches: 533, Mismatches: 94, Indels: 31
0.81 0.14 0.05
Matches are distributed among these distances:
348 38 0.07
349 229 0.43
350 5 0.01
353 1 0.00
354 4 0.01
355 254 0.48
356 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (349 bp):
CTGTCGGTCCTGCAGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGTACTCTGTATG
CCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAACAGGTCGGAGAGGCAGAATGCATAAGC
CGGGGATCGACCCGATCCCCCTTGCGTGCTGCGATCCTACTGTCGCAACCCTCGATCCGGTCTGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
CATAAAACGAGCGTGCGGGTGCTCAGCCGAGACGGAGAGGCATAATGCACAAGCCAGGGATCAGC
CCGATCAATGTACTGCCAATCCCA
Found at i:26003917 original size:26 final size:26
Alignment explanation
Indices: 26003867--26003919 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26003857 CCGGTCTGAT
*
26003867 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAAATTCGTATG
*
26003893 CTTAGACTGGGGATGAAA-TCTGTATG
1 CTTAGACTGGGAATGAAATTC-GTATG
26003919 C
1 C
26003920 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATTCGTATG
Found at i:26005032 original size:159 final size:157
Alignment explanation
Indices: 26004615--26005032 Score: 387
Period size: 159 Copynumber: 2.6 Consensus size: 157
26004605 AGCTCCGTAT
* * * *
26004615 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCTACGAAACGAGCGTGCGAGCGATCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACGAGTGT-CGGGCGATCAG
* ** *
26004680 CAGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAACTCGGTCCCCCACTACATGCTGTCAATC
65 C-GGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCAACTCGGTCCCCCACTACATGCTGCCAATC
**
26004745 CTGCTGCCACAACCCTCGGTCCGATCCGA
129 CCACTGCCACAACCCTCGGTCCGATCCGA
* * * ** * *
26004774 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTTAACCCACGAAACGGACGTG-CGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGACAACCCACGAAAC-GA-GTGTCGGGCGATC
* * * * ** * * *
26004837 AGCCGGCTGAAAAGGCATAATGCGCAAG-TCGAGGATCGGC-CTGGTCCCCCTCTGCGTGCTGCC
63 AG-CGGCCGAAGAGGCAGAATGCGCAAGCT-GGGGATCAACTC-GGTCCCCCACTACATGCTGCC
* * * *
26004900 AGTCCCACTGCCACAACCCTCGGTCCG-GCTGGG
125 AATCCCACTGCCACAACCCTCGGTCCGATC-CGA
* * *
26004933 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGACAACCCACGAAACGAGTGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACGAGTGT-CGGGCGATCAG
* *
26004998 TCGACCGAAGAGGCAGAATGTGCAAGCTGGGGATC
65 -CGGCCGAAGAGGCAGAATGCGCAAGCTGGGGATC
26005033 CGTTCAATCC
Statistics
Matches: 204, Mismatches: 44, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
157 3 0.01
158 5 0.02
159 189 0.93
160 5 0.02
161 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.17
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGACAACCCACGAAACGAGTGTCGGGCGATCAGC
GGCCGAAGAGGCAGAATGCGCAAGCTGGGGATCAACTCGGTCCCCCACTACATGCTGCCAATCCC
ACTGCCACAACCCTCGGTCCGATCCGA
Found at i:26005123 original size:26 final size:26
Alignment explanation
Indices: 26005094--26005144 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26005084 GATTCGATCG
26005094 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
* *
26005120 TAGACTGGGGATGAACTTCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
26005145 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:26005489 original size:26 final size:26
Alignment explanation
Indices: 26005460--26005512 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26005450 CTGAACCGAT
26005460 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
* * *
26005486 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
26005512 C
1 C
26005513 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCTGTATG
Found at i:26006523 original size:159 final size:158
Alignment explanation
Indices: 26006231--26007040 Score: 614
Period size: 159 Copynumber: 5.1 Consensus size: 158
26006221 CTTAGACATT
* * * * * * * * **
26006231 GAATGAACTCCGTATGCCTAAGCCAACACACGAAACAAGCGTACGGGTGCTCAGTCAGCCGGCGA
1 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGAAGA
* * *** * * *
26006296 GGTAGAATGCGCAAGCCGAGGATAAACCCGATCCCCCCCTACGTGCTATCGATCCTGCTACCGA-
66 GGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCCTACGTGCTGTCGATCCTGCTGCC-AC
*
26006360 AACCCTCAGTCCAGTCTGATCTTAGACTGG
129 AACCCTCAGTCCGGTCTGATCTTAGACTGG
* * *
26006390 GAATAAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAAGTCAGTCGAAGA
1 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGAAGA
* * * * * *
26006455 GGCATAAT-CTGCAAGTCGGGGATTGGCCTGGTCCCCCTCTATGTGCTGTCGGT-CTCGCTGCCA
66 GGCAGAATGC-GCAAGCCGGGGATCGGCCCGGTCCCCC-CTACGTGCTGTCGATCCT-GCTGCCA
**
26006518 CAACCCTCAGTCCGGT-TGGGGCTTAGACAT-G
128 CAACCCTCAGTCCGGTCT-GATCTTAGAC-TGG
* * * * * * * ** *
26006549 GAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACG-GACATGCAGGCACTCAGTCGACCGGAG
1 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAG-CGTGCGGGCGCTCAGTCGGTCGAAG
* * * * * * * ** * *
26006613 AGGTAGAATGCGTAAGCTGGGGATCGGTCTGGTCCCCCCTGCATGCTACCGATCCTGCGGTCACA
65 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACA
*
26006678 ACCCTCGGTCCGGTCTGATCTTAGACTGG
130 ACCCTCAGTCCGGTCTGATCTTAGACTGG
* * * * * *
26006707 GAATGAACTTCGTATGCATAAGTCAACCCACTAAATGAGCGTGCGAGTGCTGAG-CTGGTCGAAG
1 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GGTCGAAG
* * * * * * * * * *
26006771 AGGCATAATGCGTAAGCCGGGGATCGACCCAGTCCCCCTCTGCGTACTGTTGGTCCCGCTACCAC
65 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTACGTGCTGTCGATCCTGCTGCCAC
* * * **
26006836 AACTCTCAGT-CTGACTGGGGCTTAGACAT-G
129 AACCCTCAGTCCGGTCT-GATCTTAGAC-TGG
* * * * * * * ** *
26006866 GAATGAGCTCCCTATGCCTAAGGCAACCCACGAAATGGGTGTATGGGTGCTCAGTCGGTCGGAA-
1 GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTC-GAAG
* ** * *
26006930 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTATTGTCGCA
65 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACA
* *
26006995 ACCCTCGGTCTGGTCTGATCTTAGACTGG
130 ACCCTCAGTCCGGTCTGATCTTAGACTGG
*
26007024 TAATGAACTCCGTATGC
1 GAATGAACTCCGTATGC
26007041 TTAGACTAGG
Statistics
Matches: 497, Mismatches: 134, Indels: 41
0.74 0.20 0.06
Matches are distributed among these distances:
157 3 0.01
158 175 0.35
159 312 0.63
160 7 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGAAGA
GGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAA
CCCTCAGTCCGGTCTGATCTTAGACTGG
Found at i:26006808 original size:317 final size:316
Alignment explanation
Indices: 26006220--26007040 Score: 855
Period size: 317 Copynumber: 2.6 Consensus size: 316
26006210 AGCTTCGTAT
* * * * * **
26006220 GCTTAGACATTGAATGAACTCCGTATGCCTAAGCCAACACACGAAAC--AAGCGTACGGGTGCTC
1 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGATGC--A-GGGCACTC
** * * *** * *
26006283 AGTC-AGCCGGCGAGGTAGAATGCGCAAGCCGAGGATAAACCCGATCCCCCCCTACGTGCTATCG
63 AGTCGA-CCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCCCTACATGCTACCG
* *** * * *
26006347 ATCCTGCTACCGA-AACCCTCAGTCCAGTCTGATCTTAGACTGGGAATAAACTCCGTATGCATAA
126 ATCCTACGGTC-ACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAA
* *
26006411 GTCAACCCACGAAACGAGCGTGCGGGCGCTAAGTCAGTCGAAGAGGCATAATCTGCAAGTCGGGG
190 GTCAACCCACGAAACGAGCGTGCGAGCGCTAAGTCAGTCGAAGAGGCATAATCTGCAAGCCGGGG
* * ** * * * * **
26006476 ATTGGCCTGGTCCCCCTCTATGTGCTGTCGGTCTCGCTGCCACAACCCTCAGTCCGGTTGGG
255 ATCGACCCAGTCCCCCTCTACGTACTGTCGGTCCCGCTACCACAACCCTCAGTCCGACTGGG
26006538 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGACATGCA-GGCACTCA
1 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGG--ATGCAGGGCACTCA
* * * * * * * *
26006602 GTCGACCGGAGAGGTAGAATGCGTAAGCTGGGGATCGGTCTGGTCCCCCCTGCATGCTACCGATC
64 GTCGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTACCGATC
* *
26006667 CTGCGGTCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCA
129 CTACGGTCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * * * * *
26006732 ACCCACTAAATGAGCGTGCGAGTGCTGAG-CTGGTCGAAGAGGCATAATGC-GTAAGCCGGGGAT
194 ACCCACGAAACGAGCGTGCGAGCGCTAAGTC-AGTCGAAGAGGCATAAT-CTGCAAGCCGGGGAT
* * * *
26006795 CGACCCAGTCCCCCTCTGCGTACTGTTGGTCCCGCTACCACAACTCTCAGTCTGACTGGG
257 CGACCCAGTCCCCCTCTACGTACTGTCGGTCCCGCTACCACAACCCTCAGTCCGACTGGG
* * * * **
26006855 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGGCAACCCACGAAATGGGTGTATGGGTGCTCAG
1 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGATGCA-GGGCACTCAG
** * **
26006920 TCGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
65 TCGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTACCGATCC
** * * *
26006985 TATTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGTAATGAACTCCGTATGC
130 TACGGTCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
26007041 TTAGACTAGG
Statistics
Matches: 418, Mismatches: 75, Indels: 21
0.81 0.15 0.04
Matches are distributed among these distances:
315 3 0.01
316 2 0.00
317 326 0.78
318 82 0.20
319 1 0.00
320 1 0.00
322 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (316 bp):
GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGATGCAGGGCACTCAGT
CGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTACCGATCCT
ACGGTCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
CCACGAAACGAGCGTGCGAGCGCTAAGTCAGTCGAAGAGGCATAATCTGCAAGCCGGGGATCGAC
CCAGTCCCCCTCTACGTACTGTCGGTCCCGCTACCACAACCCTCAGTCCGACTGGG
Found at i:26007892 original size:26 final size:26
Alignment explanation
Indices: 26007863--26007915 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26007853 GGCTCAAAAT
*
26007863 CTTAGAT-TGGGAATGAGCTCCATATG
1 CTTAGATAT-GGAATGAACTCCATATG
*
26007889 CTTAGATATGGAATGAACTCCGTATG
1 CTTAGATATGGAATGAACTCCATATG
26007915 C
1 C
26007916 CTAAGCCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATATGGAATGAACTCCATATG
Found at i:26008245 original size:159 final size:159
Alignment explanation
Indices: 26007888--26008274 Score: 386
Period size: 159 Copynumber: 2.4 Consensus size: 159
26007878 AGCTCCATAT
*
26007888 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCCAAGCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* *
26007953 CCGACCAGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCCCCCTGCATGCTGTCGAT
65 CCGACCAGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCCCCATGCAGGCTGTCGAT
*
26008018 CCTGCTGCCACAACCCTCAATCCGATCCGA
130 CCCGCTGCCACAACCCTCAATCCGATCCGA
* ** * * **
26008048 TCTTAGAATGAGAATGAACTCCGTATGCAAAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGGG
1 GCTTAGAATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * * * *
26008113 CGGGCC-GAAGAGGCGTAATGCGCAAGTCGGGGATCGGCCTGAT-CCCCCTATGCGGGCTG-CAG
65 CCGACCAG-AGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCCCCATGCAGGCTGTC-G
* * * * *
26008175 GTCCCGCTGCCACAACCCTCGATTCGA-CTGGG
128 ATCCCGCTGCCACAACCCTCAATCCGATC-CGA
* * * * * * * *
26008207 GCTTAGACATGGAATGAGCTCCCTACGCCTAAGCCAACCCACGAAACGGGTGTGTGGGCACTCAG
1 GCTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
26008272 CCG
65 CCG
26008275 GTCGGAGAGG
Statistics
Matches: 180, Mismatches: 42, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
158 2 0.01
159 89 0.49
160 89 0.49
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
GCTTAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCAGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCCCCCCATGCAGGCTGTCGATC
CCGCTGCCACAACCCTCAATCCGATCCGA
Found at i:26008402 original size:26 final size:26
Alignment explanation
Indices: 26008366--26008418 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26008356 CTAATCTGAT
* *
26008366 CTTAGACTGGGAATGCACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26008392 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26008418 C
1 C
26008419 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26008764 original size:26 final size:26
Alignment explanation
Indices: 26008735--26008787 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26008725 CCGATCCAAT
* *
26008735 CTTAGATTGGGCATGTACTCCATATG
1 CTTAGACTGGGCATGAACTCCATATG
* *
26008761 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGCATGAACTCCATATG
26008787 C
1 C
26008788 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGCATGAACTCCATATG
Found at i:26009826 original size:159 final size:158
Alignment explanation
Indices: 26009641--26009943 Score: 342
Period size: 159 Copynumber: 1.9 Consensus size: 158
26009631 CTGGTCTGAT
* * * *
26009641 CTTAGACTAGGAATGAACTCCGTATGCATAA-GTCAACCCACGAAAC-GAGCTTGCTGGCACTGA
1 CTTAGACTAGGAATGAACTCCCTATGCATAAGGT-AACCCACGAAACGGA-CATGCGGGCACTCA
* * * * * * * *
26009704 GCCGACCGAAGAGGCATAATGCGTAAGTCCAGGAGCGGCTCGGTCCCCCTCTACGTGCTGTCGGT
64 GCCGACCGAAGAGGCAGAATACGTAAGTCCAGGAGCGACCCAGTCCCCC-CTACATGCTATCGAT
26009769 CCTGCTGCCACAACCCTCGGTCTGCCTACGG
128 CCTGCTGCCACAACCCTCGGTCTGCCTACGG
* * * *
26009800 CTTAGAC-ATGGAATGAGCTCCCTATGCCTAAGGTAACCCATGAAATGGACATGCGGGCACTCAG
1 CTTAGACTA-GGAATGAACTCCCTATGCATAAGGTAACCCACGAAACGGACATGCGGGCACTCAG
** * ** * *
26009864 TTGACCGGAGAGGCAGAATACGTAAGTCGGGGATCGACCCAGTCCCCCCTGCATGCTATCGATCC
65 CCGACCGAAGAGGCAGAATACGTAAGTCCAGGAGCGACCCAGTCCCCCCTACATGCTATCGATCC
26009929 TGCTGCCACAACCCT
130 TGCTGCCACAACCCT
26009944 TAGTCCAATC
Statistics
Matches: 118, Mismatches: 23, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
158 29 0.25
159 85 0.72
160 4 0.03
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCCTATGCATAAGGTAACCCACGAAACGGACATGCGGGCACTCAGC
CGACCGAAGAGGCAGAATACGTAAGTCCAGGAGCGACCCAGTCCCCCCTACATGCTATCGATCCT
GCTGCCACAACCCTCGGTCTGCCTACGG
Found at i:26010378 original size:26 final size:26
Alignment explanation
Indices: 26010328--26010379 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26010318 CAGTCTGATC
*
26010328 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCATATGT
*
26010354 TTAGACTAGGG-ATGAACTCTATATGT
1 TTAGACT-GGGAATGAACTCCATATGT
26010380 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:26010444 original size:369 final size:368
Alignment explanation
Indices: 26009759--26010592 Score: 987
Period size: 369 Copynumber: 2.3 Consensus size: 368
26009749 CCCCTCTACG
* * * * * * *
26009759 TGCTGTCGGTCCTGCTGCCACAACCCTCGGTCTGCCTACGGCTTAGACATGGAATG-AGCTCCCT
1 TGCTGCCGGTCCTGCTGCCATAACCCTCGGTCCGACTAGGGCTTAGACGTGGAATGTA-CTCCAT
** * * * * *** *
26009823 ATGCCTAAGGTAACCCATGAAATGGACATGCGGGCACTCAGTTGACCGGAGAGGCAGAATACGTA
65 ATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAACCGACCGGAGAGGCAGAATACGAA
* * * * **
26009888 AGTCGGGGATCGACCCAGTCCCCCCTGCATGCTATCGATCCTGCTGCCACAACCCTTAGTCCAAT
130 AGCCAGGGATCGACCCAGTCCCACCTGCATGCTATCGATCCTGCTACCACAACCCCGAGTCCAAT
*
26009953 CTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTC
195 CTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCTATATGCCTAAGTC
* * * **
26010018 AACCCATGAAATGAGCGTGCGGGCACTCAGTCGACTGGAGAGGCCGGCCAGAGAGGCATAATACG
260 AACCCATGAAACGAGCGTGCGGGCACTCAGTCGACCGAAGAGGCCAACCAGAGAGGCATAATACG
* * *
26010083 CAAG-CTGGGGATCAACCCTGATCCCTCTCTGTGTGCTGCCAATAC
325 CAAGTC-AGGGATCAACCC-GATCCCCCTCTGCGTGCTGCCAATAC
* *
26010128 TGCTGCCGGTCCTGCTGCCATAACCCTCAGTCCGACTAGGGCTTAGACGTGGAATGTACTCTATA
1 TGCTGCCGGTCCTGCTGCCATAACCCTCGGTCCGACTAGGGCTTAGACGTGGAATGTACTCCATA
** *
26010193 TGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGA-TCAACCGATTGGAGAGGCAGAATGCGAA
66 TGCCTAAGCCAACCCACGAAACGAACGTGCGGGC-ACTCAACCGACCGGAGAGGCAGAATACGAA
*** * * * * * *
26010257 AGCCAGGGATCGGTTCGGTCCCACTTGCGTGCTGTCGATCCTGCTATCACAACCCCCGA-TCCAG
130 AGCCAGGGATCGACCCAGTCCCACCTGCATGCTATCGATCCTGCTACCACAA-CCCCGAGTCCAA
* * *
26010321 TCTGATCTTAGACTGGGAATGAACTCCGTATGTTTAGACTAGGGATGAACTCTATATGTCTAAGT
194 TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCTATATGCCTAAGT
* *
26010386 CAACCCATGAAACGAGCGTGCGGGCACTCAGTCGGCCGAAGAGGCTAACC-GAAGAGGCATAATA
259 CAACCCATGAAACGAGCGTGCGGGCACTCAGTCGACCGAAGAGGCCAACCAG-AGAGGCATAATA
* * * *
26010450 CGTAAGTCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCC
323 CGCAAGTCAGGGATCAACCCGATCCCCCTCTGCGTGCTGCCAATAC
* * * *
26010496 CGCTACCGATCCTGCTGCCATAACCCTCGGTCC-AGCTGGGGCCTTTAGACGTGGAATGTACTCC
1 TGCTGCCGGTCCTGCTGCCATAACCCTCGGTCCGA-CTAGGG-C-TTAGACGTGGAATGTACTCC
* * *
26010560 GTATGCCTAAGCCAACCAACGAAACGAGCGTGC
63 ATATGCCTAAGCCAACCCACGAAACGAACGTGC
26010593 TATTGCTCAG
Statistics
Matches: 393, Mismatches: 64, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
367 1 0.00
368 57 0.15
369 279 0.71
370 56 0.14
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (368 bp):
TGCTGCCGGTCCTGCTGCCATAACCCTCGGTCCGACTAGGGCTTAGACGTGGAATGTACTCCATA
TGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAACCGACCGGAGAGGCAGAATACGAAA
GCCAGGGATCGACCCAGTCCCACCTGCATGCTATCGATCCTGCTACCACAACCCCGAGTCCAATC
TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCTATATGCCTAAGTCA
ACCCATGAAACGAGCGTGCGGGCACTCAGTCGACCGAAGAGGCCAACCAGAGAGGCATAATACGC
AAGTCAGGGATCAACCCGATCCCCCTCTGCGTGCTGCCAATAC
Found at i:26010713 original size:370 final size:367
Alignment explanation
Indices: 26009869--26010715 Score: 1006
Period size: 369 Copynumber: 2.3 Consensus size: 367
26009859 CTCAGTTGAC
* * * ** *
26009869 CGGAGAGGCAGAATACGTAAGTCGGGGATCGACCCAGTCCCCCCTGCATGCTATCGATCCTGCTG
1 CGGAGAGGCAGAATGC-AAAGTAGGGGATCGACCTGGTCCCCCCTGCATGCTGTCGATCCTGCTG
* *
26009934 CCACAACCCTTA-GTCCAATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGAT
65 TCACAACCC-TAGGT-CAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGAT
* * * *
26009998 GAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTCAGTCGACTGGAGAGGCC
128 GAACTCTATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGACCGAAGAGGCC
** * * *
26010063 GGCCAGAGAGGCATAATACGCAAGCTGGGGATCAACCCTGATCCCTCTCTGTGTGCTGCCAATAC
193 AACCAGAGAGGCATAATACGCAAGCTAGGGATCAACCCTGATCCCCCTCTGCGTGCTGCCAATAC
* * * *
26010128 TGCTGCCGGTCCTGCTGCCATAACCCTCAGTCCGACTAGGGCTTAGACGTGGAATGTACTCTATA
258 CGCTACCGATCCTGCTGCCATAACCCTCAGTCCGACTAGGGCTTAGACGTGGAATGTACTCCATA
* * *
26010193 TGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGATCAACCGAT
323 TGCCTAAGCCAACCAACGAAACGAACGTGCGAGCGATCAACCAAT
* * ** * * *
26010238 TGGAGAGGCAGAATGCGAAAGCCA-GGGATCG-GTTCGGTCCCACTTGCGTGCTGTCGATCCTGC
1 CGGAGAGGCAGAATGC-AAAG-TAGGGGATCGACCT-GGTCCCCCCTGCATGCTGTCGATCCTGC
* ** * * *
26010301 TATCACAACCCCCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGTTTAGACTAGGGA
63 TGTCACAACCCTAGGT-CAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGA
* *
26010366 TGAACTCTATATGTCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGGCCGAAGAGGC
127 TGAACTCTATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGACCGAAGAGGC
* * * *
26010431 TAACC-GAAGAGGCATAATACGTAAG-TCAGGGATCAGCCC-GATCCCCCTCTGCGTGCTGCCGA
192 CAACCAG-AGAGGCATAATACGCAAGCT-AGGGATCAACCCTGATCCCCCTCTGCGTGCTGCCAA
* * *
26010493 TCCCGCTACCGATCCTGCTGCCATAACCCTCGGTCC-AGCTGGGGCCTTTAGACGTGGAATGTAC
255 TACCGCTACCGATCCTGCTGCCATAACCCTCAGTCCGA-CTAGGG-C-TTAGACGTGGAATGTAC
* * * ** * *
26010557 TCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCTATTGCTCAGCCAAT
317 TCCATATGCCTAAGCCAACCAACGAAACGAACGTGCGAGCGATCAACCAAT
*
26010608 CGGAGAGGTAGAATGCACAAGTAGGGGATCGACCTGGTCCCCCCTGCATGCTGTCGATCCTGCTG
1 CGGAGAGGCAGAATGCA-AAGTAGGGGATCGACCTGGTCCCCCCTGCATGCTGTCGATCCTGCTG
* * *
26010673 TCACAACCCTAGGTCTGTTCCGATCTTAGACTGAGAATGAACT
65 TCACAACCCTAGGTCAG-TCTGATCTTAGACTGGGAATGAACT
26010716 TTGTATGCAT
Statistics
Matches: 398, Mismatches: 68, Indels: 23
0.81 0.14 0.05
Matches are distributed among these distances:
367 1 0.00
368 58 0.15
369 197 0.49
370 141 0.35
371 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (367 bp):
CGGAGAGGCAGAATGCAAAGTAGGGGATCGACCTGGTCCCCCCTGCATGCTGTCGATCCTGCTGT
CACAACCCTAGGTCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAA
CTCTATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGACCGAAGAGGCCAAC
CAGAGAGGCATAATACGCAAGCTAGGGATCAACCCTGATCCCCCTCTGCGTGCTGCCAATACCGC
TACCGATCCTGCTGCCATAACCCTCAGTCCGACTAGGGCTTAGACGTGGAATGTACTCCATATGC
CTAAGCCAACCAACGAAACGAACGTGCGAGCGATCAACCAAT
Found at i:26011049 original size:26 final size:26
Alignment explanation
Indices: 26011013--26011065 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26011003 CCAGTTCGAT
26011013 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
* *
26011039 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
26011065 C
1 C
26011066 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:26011409 original size:26 final size:26
Alignment explanation
Indices: 26011380--26011430 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26011370 CCAGTCTGAT
26011380 CTTAGACTGG-GAATCAACTCCGTATG
1 CTTAGACTGGAG-ATCAACTCCGTATG
*
26011406 CTTAGACTGGAGATGAACTCCGTAT
1 CTTAGACTGGAGATCAACTCCGTAT
26011431 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGAGATCAACTCCGTATG
Found at i:26014473 original size:817 final size:814
Alignment explanation
Indices: 26012846--26014423 Score: 2234
Period size: 817 Copynumber: 1.9 Consensus size: 814
26012836 GAATCTACTT
* * * *
26012846 CGTATGCCTAAGCCAACACACGAAACGAGCGTATGGGTGCTCAGCTAACCAGAGAGGCAAGATGC
1 CGTATGCCTAAGCCAACACACGAAACGAGCGTACGGGTGCTCAACCAACCAGAGAGGCAAGATAC
** *
26012911 GCAAGCCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAA
66 GCAAGCCAAGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTACCATGCCAA
* *
26012976 TGCCATTTTTATTACTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTTGTGGC
131 TGCCATTTTTATGACTTGTAAATTCATACAATGGTCCCCTAACCCTTCATGTGAAGTTTTGTGGC
* ** **
26013041 AAGATGACCTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCAAGATTTTTTAAAAT
196 AAGATAACCCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCAAGATTTTTTAAAAT
* * * *
26013106 TTTTTTAGAAGGTCTTTTGCCCCAAAATTTGGTAGAGGTGATCCTTGTATTTTTTTTTGGGTGCA
261 TTTTTTAGAAAGACTTTTGCCCCAAAATTTGGTAGAGGTGATCCTTGTATTTTTTGTTGGATGCA
* * *
26013171 CAAAAAAATTCAGCTAAAAACTGGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCC
326 CAAAAAAATTCAGCAAAAAAATCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCC
* *
26013236 ATTTTAAACACTTTAATGGCTAGTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGT
391 ATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGT
*
26013301 GTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
456 GTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCA
* * * *
26013366 CACATCATGTGCGTACACCCCCCGACCCCCCCAATCACACCCCCTCAATGTCGTCGGTTAGGCTC
521 CACATCATGTGCGCACACCCCCCGACCCCCCCAATCACAACCCCTCAATGCCGTCAGTTAGGCTC
* *
26013431 TCTGGCGATGCTCCGACGATGGTGCCCCGGGTGAAACGAGCGTGGCACCAGCACATGCCCAAGCC
586 TCTGGCGATGCTCCGACGATGGTGCCCCAGGTGAAACGAGCATGGCACCAGCACATGCCCAAGCC
*
26013496 CAGCAAGTGCACCATGGCTCAAAATCTTAGATTGGGAATGAGCTCCATATGCTTAGACATGGAAT
651 CAGCAAGTGCACCATGCCTCAAAATCTTAGATTGGGAATGAGCTCCATATGCTTAGACATGGAAT
* * *
26013561 GAACTTCGTATGCCTAAGCTAACCCACGAACTCCGTAACCCTCGATCTGGTCCGATCTTAGACTG
716 GAACTCCGTATGCCTAAGCTAACCCACGAAC-ACG-AACCCTCGA-CTGGTCCGATCTCAGACTG
* *** **
26013626 GGAATGAACTTCTTATACTTAGACTGGGGATGAACTC
778 GGAATGAACGTAGAATACGCAGACTGGGGATGAACTC
* * * * * *
26013663 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGACCAGAGAGGCAGGATAC
1 CGTATGCCTAAGCCAACACACGAAACGAGCGTACGGGTGCTCAACCAACCAGAGAGGCAAGATAC
** *
26013728 GCAAGCCAAGGATCGAACGGGTGGTAGGTGGGTTCAAGTGCATCTTCATATTTCTATCATGCCAA
66 GCAAGCCAAGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTACCATGCCAA
* * *
26013793 TGCCATTTTTATGGCTTGTAATTTCATACAATGGTCCCCTGACCCTTCATGTGAAGTTTCT-TGG
131 TGCCATTTTTATGACTTGTAAATTCATACAATGGTCCCCTAACCCTTCATGTGAAGTTT-TGTGG
* ** ** *
26013857 CAAGATAACCCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTTAAA
195 CAAGATAACCCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCAAGATTTTTTAAAA
* * *
26013922 TTTTTTTAGAAAGAGTTTTGTCCCC-AAATTTGTTAGATGTGATCCTTGTA-TTTTTGTTGGCAT
260 TTTTTTTAGAAAGACTTTTG-CCCCAAAATTTGGTAGAGGTGATCCTTGTATTTTTTGTTGG-AT
*
26013985 GCACAAAAAAATTCAGCAAAAAAATCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAGAAGTGTC
323 GCACAAAAAAATTCAGCAAAAAAATCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTC
*
26014050 CCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAGCTATAAAATCTCAAATGCTCTTTAAGGG
388 CCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGG
* * *
26014115 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGTACCCA
453 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAACATAAGGGCCAAGTACCAGCACCCA
* * * *
26014180 TCGCACATCATGTGGGCACACCCCCC-AGCCCCCCAATCGTCAGAACCCC-CAATGCCG-CTAGT
518 TCACACATCATGTGCGCACACCCCCCGACCCCCCCAA---TCACAACCCCTCAATGCCGTC-AGT
26014242 TAGGCTCTTCGACGATGCTCTGGCGATGCTCCGACGATGGTGCCCCAGGTGAAACGAGCATGGCA
579 TA-G------G-C--T-CTCTGGCGATGCTCCGACGATGGTGCCCCAGGTGAAACGAGCATGGCA
* * * * * *
26014307 CCAGCACATGCCCGAGCCCAGTATGTGCACCGTGCCTTAAAATCTTAGATTGGGAATGAGCTCCG
633 CCAGCACATGCCCAAGCCCAGCAAGTGCACCATGCCTCAAAATCTTAGATTGGGAATGAGCTCCA
26014372 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAA-ACGA
698 TATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAACACGA
26014424 GCGTGCGGGC
Statistics
Matches: 674, Mismatches: 69, Indels: 27
0.88 0.09 0.04
Matches are distributed among these distances:
816 18 0.03
817 474 0.70
818 16 0.02
819 9 0.01
825 1 0.00
826 2 0.00
827 2 0.00
828 1 0.00
829 151 0.22
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (814 bp):
CGTATGCCTAAGCCAACACACGAAACGAGCGTACGGGTGCTCAACCAACCAGAGAGGCAAGATAC
GCAAGCCAAGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTACCATGCCAA
TGCCATTTTTATGACTTGTAAATTCATACAATGGTCCCCTAACCCTTCATGTGAAGTTTTGTGGC
AAGATAACCCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCAAGATTTTTTAAAAT
TTTTTTAGAAAGACTTTTGCCCCAAAATTTGGTAGAGGTGATCCTTGTATTTTTTGTTGGATGCA
CAAAAAAATTCAGCAAAAAAATCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCC
ATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCA
CACATCATGTGCGCACACCCCCCGACCCCCCCAATCACAACCCCTCAATGCCGTCAGTTAGGCTC
TCTGGCGATGCTCCGACGATGGTGCCCCAGGTGAAACGAGCATGGCACCAGCACATGCCCAAGCC
CAGCAAGTGCACCATGCCTCAAAATCTTAGATTGGGAATGAGCTCCATATGCTTAGACATGGAAT
GAACTCCGTATGCCTAAGCTAACCCACGAACACGAACCCTCGACTGGTCCGATCTCAGACTGGGA
ATGAACGTAGAATACGCAGACTGGGGATGAACTC
Found at i:26014698 original size:159 final size:158
Alignment explanation
Indices: 26014535--26014845 Score: 356
Period size: 159 Copynumber: 2.0 Consensus size: 158
26014525 TTGGTCCGAT
* * * * * * *
26014535 CTTAGAC-CGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAA-TGAGCATGCGGGCATTGA
1 CTTAGACACG-GAATCAACTCCCTATGCATAAGCCAACCCACGAAACAG-GCATGCAGGCACTCA
* * ** * * * * *
26014598 ACCGGTCGAAGAGGCATAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCTTTGTGTGCTGTCGGT
64 ACCGATCGAAGAGGCAGAATGCCCAAGCCGAGGATCGGCACGGTCCCCC-CTGCGTGCTGCCGAT
26014663 CCCACTGCCACAACCCTCGGCCCGGCTAGGG
128 CCCACTGCCACAACCCTCGGCCCGGCTAGGG
* * * *
26014694 CTTAGACATGGAATCAGCTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCAGGCACTCAAC
1 CTTAGACACGGAATCAACTCCCTATGCATAAGCCAACCCACGAAACAGGCATGCAGGCACTCAAC
* * *
26014759 CGATCGAAGAGGTAGAATGCCCAAGCCGGGGATCGGCACGGTCCCCCCTGCGTGCTGCCGATCCT
66 CGATCGAAGAGGCAGAATGCCCAAGCCGAGGATCGGCACGGTCCCCCCTGCGTGCTGCCGATCCC
* *
26014824 ACTGTCACAACCCTCGGTCCGG
131 ACTGCCACAACCCTCGGCCCGG
26014846 TCCGATCTTA
Statistics
Matches: 125, Mismatches: 25, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
158 33 0.26
159 90 0.72
160 2 0.02
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.17
Consensus pattern (158 bp):
CTTAGACACGGAATCAACTCCCTATGCATAAGCCAACCCACGAAACAGGCATGCAGGCACTCAAC
CGATCGAAGAGGCAGAATGCCCAAGCCGAGGATCGGCACGGTCCCCCCTGCGTGCTGCCGATCCC
ACTGCCACAACCCTCGGCCCGGCTAGGG
Found at i:26015895 original size:159 final size:158
Alignment explanation
Indices: 26015594--26016096 Score: 417
Period size: 159 Copynumber: 3.2 Consensus size: 158
26015584 GCTCCGTATG
* ** * * **
26015594 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACGAGCGTACGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAA
* * * * * * * * *
26015658 CCGGCCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCCCTGCGTACTGTC-GAT
65 GCGGCCAGAGAGGCAGAATACGCAAGTCGGGGATCGGCCCGAT-CCCCCTTGCGTGCTG-CAGAT
*** * * *
26015722 CCTATTACCGCAACCCTCGGTCGGGTTCGAT
128 CCCGCTGCCACAACCCTCGGTCTGGTTCGAT
* *
26015753 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACT-GAG
1 CTTAGACTGGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAAG
* * *
26015817 CAGGCC-GAAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCAG-
66 C-GGCCAG-AGAGGCAGAATACGCAAGTCGGGGATCGGCCCGATCCCCCT-TGCGTGCTG-CAGA
* * * **
26015880 TCCCGCTGCCACAACCCTCAGTCTGGCTGGGG
127 TCCCGCTGCCACAACCCTCGGTCTGGTTCGAT
* ** * * * * *
26015912 CTTAGACAT-GGAATGACCTCCCTATGCCTAAGCCAACCCAGGAAATGGGCGTGCGGGCACTCAA
1 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAA
* * * * * **
26015976 TCGGCCAGAGAGGCAGAATACGCAAGTCGGGGATGGGCCCGGTCCGCCTTGCGTGTTGTTGATCC
65 GCGGCCAGAGAGGCAGAATACGCAAGTCGGGGATCGGCCCGATCCCCCTTGCGTGCTGCAGATCC
* * *
26016041 TGCTGTCGCAACCCTCGGTCTGGTTCGAT
130 CGCTGCCACAACCCTCGGTCTGGTTCGAT
*
26016070 CTTCGACTGGGAATGAACT-TCGTATGC
1 CTTAGACTGGGAATGAACTCT-GTATGC
26016097 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 63, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 61 0.23
159 202 0.75
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAAG
CGGCCAGAGAGGCAGAATACGCAAGTCGGGGATCGGCCCGATCCCCCTTGCGTGCTGCAGATCCC
GCTGCCACAACCCTCGGTCTGGTTCGAT
Found at i:26016474 original size:26 final size:26
Alignment explanation
Indices: 26016438--26016490 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26016428 TCAGTCTGAT
*
26016438 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
26016464 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
26016490 C
1 C
26016491 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:26016492 original size:368 final size:368
Alignment explanation
Indices: 26015905--26016884 Score: 1053
Period size: 368 Copynumber: 2.7 Consensus size: 368
26015895 CCTCAGTCTG
* * * * **
26015905 GCTGGGGCTTAGACATGGAATG-ACCTCCCTATGCCTAAGCCAACCCAGGAAATGGGCGTGCGGG
1 GCTGGGGCTTAGACGTGGAATGTA-CTCCATATGCCTAAGCCAACCCACGAAATGAGCGTATGGG
* * * * * * * * * * * *
26015969 CACTCAATCGGCCAGAGAGGCAGAATACGCAAGTCGGGGATGGGCCCGGTCCGCCTTGCGTGTTG
65 AACTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTA
** ** * * *
26016034 TTGATCCTGCTGTCGCAACCCTCG-GTCTGGT-TCGATCTTCGACTGGGAATGAACTTCGTATGC
130 CCGATCCTGCTACCGCAACCCTCGATTC-GGTCT-GATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
26016097 TTAGACTGGGGATGAACTCCATATGCCTAAGTTAATCGATGAAACGAGCGTGCGGGCACTCAGCC
193 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCC
* * * ** ** *
26016162 AA-TCGGAGAGGCCGGTTGGAGAGGCATAATACGTAAGCCGAGGATCAGCCCGGTCCCCCTCTGC
258 AACT-AGAGAGGCCGATCGGAGAGGCATAATACACAAGCCGAGGATCAAACCGATCCCCCTCTGC
* * *
26016226 GTGCTGCCGATCCCGCTGCCTG-TCCTACTACCATAAACC-TCGGTCCA
322 GTGCTGCCGATCCCGCTACC-GATCCCACTACCA-AAACCTTCGGTACA
26016273 GCTGGGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTATGGGA
1 GCTGGGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTATGGGA
* * * * *
26016338 ACTCAACCGACCGGAGAGGTAGATTGCGCAAGCCGGGGATTGGTCTGGTCCCCCCTGCATGCTAC
66 ACTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTAC
* * *
26016403 CGATCCTGCTACCGTAACCTTCGATTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
131 CGATCCTGCTACCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * **
26016468 GACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGTGGGTGCTCAGCCAAC
196 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCAAC
* * * * *
26016533 TAGAGAGGTCGATCGGAGAGGCATAATGCACAAGCTGGGGATCAAACCGATCCCCCTCTGTGTGC
261 TAGAGAGGCCGATCGGAGAGGCATAATACACAAGCCGAGGATCAAACCGATCCCCCTCTGCGTGC
* * * * **
26016598 TGTCGATCCTGCTACCGATCCCGCTACCACAACCTTCGGTATG
326 TGCCGATCCCGCTACCGATCCCACTACCAAAACCTTCGGTACA
* * * * * *
26016641 GCTGGGGCTTAGACGTGGAATGTACTTCGTATGCCTAATCCAACCCCCGAAACGAGC--AT-GCA
1 GCTGGGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTATGGGA
* * * ** * *
26016703 AGCTCTCAGCCGACCGGAGAGGCAAAATGCACAAGCCAAGGATCGGCCTGATCCCTCCTGCGTGC
66 A---CTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGC
* * * * *
26016768 TACCGATCTTGCTACTGCAACCCTCGATT-GGTCCGATCTTAGATTGGGAATGAAGTCCGTATGC
128 TACCGATCCTGCTACCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
*
26016832 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
193 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
26016885 AGACGCTTAG
Statistics
Matches: 508, Mismatches: 95, Indels: 19
0.82 0.15 0.03
Matches are distributed among these distances:
365 3 0.01
366 2 0.00
367 84 0.17
368 414 0.81
369 5 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (368 bp):
GCTGGGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTATGGGA
ACTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTAC
CGATCCTGCTACCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCAAC
TAGAGAGGCCGATCGGAGAGGCATAATACACAAGCCGAGGATCAAACCGATCCCCCTCTGCGTGC
TGCCGATCCCGCTACCGATCCCACTACCAAAACCTTCGGTACA
Found at i:26016835 original size:26 final size:26
Alignment explanation
Indices: 26016798--26016857 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
26016788 CCCTCGATTG
*
26016798 GTCCG-AT-CTTAGATTGGGAATGAA
1 GTCCGTATGCTTAGACTGGGAATGAA
*
26016822 GTCCGTATGCTTAGACTGGGGATGAA
1 GTCCGTATGCTTAGACTGGGAATGAA
*
26016848 CTCCGTATGC
1 GTCCGTATGC
26016858 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 24 0.77
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.28
Consensus pattern (26 bp):
GTCCGTATGCTTAGACTGGGAATGAA
Found at i:26018245 original size:354 final size:350
Alignment explanation
Indices: 26017407--26018701 Score: 1325
Period size: 354 Copynumber: 3.6 Consensus size: 350
26017397 CCCTCTGCGT
* * * * * *
26017407 GCTGCCGGTCCCGATGCCATAACGCTCGGTCTGGCTGGGGCTTAGACATGGAATG-AGCTCCCTA
1 GCTGCCGGTCCTGCTGCCAGAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTA-CTCCGTA
* * * * * **
26017471 TGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCAGCCGACCGGAGAGGCAAAATGCATAA
65 TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAA
** * * *
26017536 GCCGAAGATCGGCCTGGTCTCCCCTGCGTGCTGTCGATCCTGCTGCCG-AACCCTCGATCCAGTT
130 GCCGGGGATCGGCCTGGTC-CCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTC
* *
26017600 TGATCCTAGACTGGGAATGAACTCCGTATTCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
194 TGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* * * * * * * *
26017665 ACCCACGAAAAAGAGTGTGCAGGCGCTAAGTCGACCGGAGAGGCATAATGCATAAGTCGAGGATC
259 ACCCACGAAAGAGCGTGTG--GGCGCTCAGTCGACAGGGGAGGCATAACGC--AAGCCGGGGATC
* * * *
26017730 AGTTTGGTCCCCCTCTGTGTGCTGTCGATCCT
320 AGCTCGGTCCCCCTCTATGTGCT-TCGATCCC
* ** * * * * *
26017762 ACTTTCGGTCCTACTACCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTACTCCGTAT
1 GCTGCCGGTCCTGCTGCCAGAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTAT
* * * * *
26017827 GCCTAAGCCAGCCCATGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGTAGAACGTGCAAG
66 GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG
* * * * *
26017892 CTGGGGATCGGCTTGGTCCCCCTTGCATGCTGTCGATCCTACTACCGCAACCCTCGATCCGGTTT
131 CCGGGGATCGGCCTGGTCCCCC-TGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTCT
* * * * *
26017957 GATCTTAGACTGGGAATGAACTCCATATCCTTAGACTGGGGAAGAATTCCGCATGCCTAAGTGAA
195 GATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
*
26018022 CCCATGAAACGAGCGTGTGGGCGCTCAGTCGACAGGGGAGGCATAACGCACGAGCCGGGGATCAG
260 CCCACGAAA-GAGCGTGTGGGCGCTCAGTCGACAGGGGAGGCATAACGCA--AGCCGGGGATCAG
* *
26018087 CTCGATCCCCCTCTATTTGCTATCGATCCC
322 CTCGGTCCCCCTCTATGTGCT-TCGATCCC
* * *
26018117 GCTGCCGGTCCTGCTGCCA-CACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTAT
1 GCTGCCGGTCCTGCTGCCAGAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTAT
* * * * * *
26018181 GCTTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGTGCAAG
66 GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG
* * * * * * * *
26018246 TCAGGGACCGGCCCGGTCCCCCCAGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCTGGTCC
131 CCGGGGATCGGCCTGGT-CCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTCT
* * * * *
26018311 AATCATAGACTGGTAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAA
195 GATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* ** * *
26018376 CCTACGAAATGAGCGTACGGGCGCTC-GCCGACTGAAGAGGCCGGTCGGAGAGGCATAATGGCAA
260 CCCACGAAA-GAGCGTGTGGGCGCTCAGTCGAC-----A-----G--GG-GAGGCATAA-CGCAA
* * * *
26018440 GCCGGGGATCAGCCCGGTCCCCCTTTACGTGCTGCAGATCCC
310 GCCGGGGATCAGCTCGGTCCCCCTCTATGTGCTTC-GATCCC
* * * * *
26018482 GTTGCCGGTCCTGCTGCTAGAACCTTTGGTTCGGCTGGGGCTTAGACATGGAATGTACTCCGTAT
1 GCTGCCGGTCCTGCTGCCAGAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTAT
* * * *
26018547 GCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCTGGA-AGGCAGAATGCGTAAG
66 GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG
* *
26018611 CCGGGGATCGGCC---T---CCTGCGTGTTGTCGATCCTGCTACCGCAACCCTCGATCCGATCTG
131 CCGGGGATCGGCCTGGTCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTCTG
* * *
26018670 ATCTTAGACTAGGAATGAACTTCGTATGCTTA
196 ATCTTAGACTGGGAATGAACTCCGTATCCTTA
26018702 TGTCATGCCC
Statistics
Matches: 778, Mismatches: 139, Indels: 43
0.81 0.14 0.04
Matches are distributed among these distances:
353 6 0.01
354 224 0.29
355 219 0.28
356 83 0.11
357 7 0.01
358 67 0.09
362 1 0.00
363 1 0.00
364 1 0.00
365 78 0.10
366 88 0.11
367 3 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (350 bp):
GCTGCCGGTCCTGCTGCCAGAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTAT
GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG
CCGGGGATCGGCCTGGTCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTCTG
ATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
CCACGAAAGAGCGTGTGGGCGCTCAGTCGACAGGGGAGGCATAACGCAAGCCGGGGATCAGCTCG
GTCCCCCTCTATGTGCTTCGATCCC
Found at i:26025785 original size:26 final size:26
Alignment explanation
Indices: 26025749--26025801 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26025739 CTAGTCCAAT
*
26025749 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26025775 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
26025801 C
1 C
26025802 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26026844 original size:159 final size:158
Alignment explanation
Indices: 26026485--26026848 Score: 373
Period size: 158 Copynumber: 2.3 Consensus size: 158
26026475 AGCTCCGTAT
* * * * *
26026485 GCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCGTGCGGGCGCTCGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCACTCGA
* * * **
26026550 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCCGTCCCCCCTGCGTGCTATTGATCC
66 CCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCCGTCCCCCCTACGTGCTACAGATCC
* *
26026615 CATTGCCGCAACCCTCAGTCTGATCTGA
131 CATTGCCACAACCCTCAGTCCGATCTGA
* * * *
26026643 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAAACCATGAAACGAACGTGCGGGCACT-G
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCACTCG
* * * * * * *
26026706 AGCCGGCTGAAGAGGCATAATGCGCAATCCAGGGATCG-GCTCGATCCCCCTCTACGTGCTGCCA
65 A-CCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCCG-TCCCCC-CTACGTGCT-ACA
* *
26026770 G-TCCCGTTGCCACAACCCTC-GATCCGA-CTAGG
126 GATCCCATTGCCACAACCCTCAG-TCCGATCT-GA
*
26026802 GCTTAGACATGGAATGAGCTCTC-TATGCCTAAGCCAACCCATGAAAC
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCATGAAAC
26026849 AGGCGTACGG
Statistics
Matches: 167, Mismatches: 30, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
157 6 0.04
158 90 0.54
159 68 0.41
160 3 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCACTCGA
CCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCCGTCCCCCCTACGTGCTACAGATCC
CATTGCCACAACCCTCAGTCCGATCTGA
Found at i:26026978 original size:26 final size:26
Alignment explanation
Indices: 26026949--26027001 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26026939 CTGGTCCGAT
26026949 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26026975 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26027001 C
1 C
26027002 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26027338 original size:26 final size:26
Alignment explanation
Indices: 26027309--26027361 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26027299 CCGATTCGCT
26027309 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
26027335 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
26027361 C
1 C
26027362 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:26028070 original size:26 final size:26
Alignment explanation
Indices: 26028032--26028084 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26028022 GGCTTAAAAT
*
26028032 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26028058 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
26028084 C
1 C
26028085 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26029283 original size:26 final size:26
Alignment explanation
Indices: 26029254--26029306 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26029244 GGCTCAAAAT
*
26029254 CTTAGAC-TAGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
26029280 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26029306 C
1 C
26029307 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26029581 original size:159 final size:158
Alignment explanation
Indices: 26029279--26029711 Score: 498
Period size: 159 Copynumber: 2.7 Consensus size: 158
26029269 AGCTCCGTAT
26029279 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAG
* *
26029344 CC-AGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCCTTTGTGTTGTCGAT
66 CCGA-CCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGAT-CCCCCCTTTGTGCTGTCGAT
** * ** * *
26029408 CCTGCTGCTGCAACCCTTGATCTGGTCT-GA
129 CCCACTACCACAACCCTCGATCCGGT-TGGA
* * * * * *
26029438 TCTTAGAC-TGGGAATAAACTCCGTATGCATAAGTCAACCCATGAAATGAGTGTGCGGGCGCTT-
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCG-TTC
* * * *
26029501 AGCCGACCGAAAAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTTTTCGTGCTG-CTG
64 AGCCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTTT-GTGCTGTC-G
* * *
26029565 GTCCCACTACCACAACCCTCGGTCCGGTTGGG
127 ATCCCACTACCACAACCCTCGATCCGGTTGGA
* * * *
26029597 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAG
* * * *
26029662 TCGGCCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCT
26029712 GCGTGCTATC
Statistics
Matches: 226, Mismatches: 40, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
158 13 0.06
159 209 0.92
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTTTGTGCTGTCGATCC
CACTACCACAACCCTCGATCCGGTTGGA
Found at i:26030160 original size:26 final size:26
Alignment explanation
Indices: 26030124--26030173 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26030114 TCGGTCTGAT
*
26030124 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATAAACTCCGTAAG
*
26030150 CTTAGACTGGGGATAAACTCCGTA
1 CTTAGACTGGGAATAAACTCCGTA
26030174 TGCCTAATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTAAG
Found at i:26030874 original size:26 final size:26
Alignment explanation
Indices: 26030845--26030897 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26030835 GGCTCAAAAT
* *
26030845 CTTAGAC-TGGGAATTAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
26030871 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26030897 C
1 C
26030898 CTAAGCAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26031170 original size:158 final size:158
Alignment explanation
Indices: 26030870--26031180 Score: 347
Period size: 158 Copynumber: 2.0 Consensus size: 158
26030860 AGCTCCGTAT
* * * *
26030870 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGGAACGAGCATGTGGGCGCTGAGT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCATGCGGGCGCTCAGC
* * * * * * ** *
26030935 CGGCCGAAGAGGCATAATGTGCAAGCCGGGGATCAGCCCGATCCCTCTCTGTGTGCTGCCGGCCC
66 CGACCGAAAACGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCCCTGCATGCTGCCGACCC
26031000 CGCTGCCACAACCCTCGGTCCGGCTAGG
131 CGCTGCCACAACCCTCGGTCCGGCTAGG
* * * * *
26031028 GCTTAGACATGGAATGAGCTCTC-TATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAG-CAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * * *
26031092 GCCGACCGAAAACGTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCC-CCCTGCATGCTTCCGAT
64 GCCGACCGAAAACGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCCCTGCATGCTGCCGAC
* * *
26031156 CCTGCTGTCGCAACCCTCGGTCCGG
129 CCCGCTGCCACAACCCTCGGTCCGG
26031181 TCTGATCTTA
Statistics
Matches: 124, Mismatches: 27, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
158 63 0.51
159 61 0.49
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCATGCGGGCGCTCAGC
CGACCGAAAACGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCTCCCTGCATGCTGCCGACCC
CGCTGCCACAACCCTCGGTCCGGCTAGG
Found at i:26031216 original size:26 final size:26
Alignment explanation
Indices: 26031187--26031239 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26031177 CCGGTCTGAT
* *
26031187 CTTAGATTTGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
* *
26031213 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
26031239 C
1 C
26031240 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:26031494 original size:355 final size:342
Alignment explanation
Indices: 26030843--26031568 Score: 875
Period size: 355 Copynumber: 2.1 Consensus size: 342
26030833 GTGGCTCAAA
* *
26030843 ATCTTAGACTGGGAATTAGCTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACC
1 ATCTTAGACTGGGAATAAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACC
* * * * **
26030908 CACGGAACGAGCATGTGGGCGCTGAGTCGGCCGAAGAGGCATAATGTGCAAGCCGGGGATCAGCC
66 CACGAAACGAGCATGCGGGCGCTCAGCCGGCCGAAGAGGCATAATACGCAAGCCGGGGATCAGCC
* * *
26030973 CGATCCCTCTCTGTGTGCTGCCGGCCCCGCTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACAT
131 CGATCCCTCTCTGTGTGCTCCCGGCCCCGCTCCCACAACCCTCGGTCCGACTAGGGCTTAGACAT
* * * * *
26031038 GGAATGAGCTCTCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGCCGACCGAAA
196 GGAATGAGCTCTCTATGCCTAAGCCAACCCAGGAAACGAGCGTACGGGCGCTCAGCCAACCGAAA
* * * * * *
26031103 ACGTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCATGCTTCCGATCCTGCTGTCGCA
261 ACGTAAAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTACATGCTACCGATCCTGCTGTCGCA
*
26031168 ACCCTCGGTCCGGTCTG
326 ACCCTCGATCCGGTCTG
* * * * *
26031185 ATCTTAGATTTGGAATAAACTCTGTATGCTTAGAC-TGGGGATGAACTCTGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATAAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAA
* * * * *
26031249 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCATAATACGCAAGCCTGGGATCAG
64 CCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCGAAGAGGCATAATACGCAAGCCGGGGATCAG
*
26031314 CCCGATCCCTCTCTACGTGCTGTCAATCCCGCTGCTAGTCCTGCTCCCACAACCCTCGGTCCGAC
129 CCCGATCCCTCTCT--GTG-TG-C--TCCCG--GC----CCCGCTCCCACAACCCTCGGTCCGAC
*
26031379 TGGGGCTTAGACATGGAATGTA-CTC-CATATGCCTAAGCCAACCCAGGAAACGAGCGTACGGGC
182 TAGGGCTTAGACATGGAATG-AGCTCTC-TATGCCTAAGCCAACCCAGGAAACGAGCGTACGGGC
* * * * **
26031442 GCTCAGCCAACCGGAGAC-TCAAAATGTGCAAGCCGAGGCTCAGCCCGGTCCCCCCTATGTGCTA
245 GCTCAGCCAACCGAAAACGT-AAAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTACATGCTA
*
26031506 CCGATCCTGCTGTCGTAACCCTCGATCCGGTCTG
309 CCGATCCTGCTGTCGCAACCCTCGATCCGGTCTG
* *
26031540 ATCTTAGACTGGGAATGAACTCCATATGC
1 ATCTTAGACTGGGAATAAACTCCGTATGC
26031569 CTATGTCAAC
Statistics
Matches: 320, Mismatches: 47, Indels: 21
0.82 0.12 0.05
Matches are distributed among these distances:
341 1 0.00
342 51 0.16
343 71 0.22
345 3 0.01
346 2 0.01
347 1 0.00
349 4 0.01
351 2 0.01
354 2 0.01
355 182 0.57
356 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (342 bp):
ATCTTAGACTGGGAATAAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACC
CACGAAACGAGCATGCGGGCGCTCAGCCGGCCGAAGAGGCATAATACGCAAGCCGGGGATCAGCC
CGATCCCTCTCTGTGTGCTCCCGGCCCCGCTCCCACAACCCTCGGTCCGACTAGGGCTTAGACAT
GGAATGAGCTCTCTATGCCTAAGCCAACCCAGGAAACGAGCGTACGGGCGCTCAGCCAACCGAAA
ACGTAAAATGCGCAAGCCGAGGATCAGCCCGGTCCCCCCTACATGCTACCGATCCTGCTGTCGCA
ACCCTCGATCCGGTCTG
Found at i:26032915 original size:159 final size:157
Alignment explanation
Indices: 26032436--26032940 Score: 460
Period size: 159 Copynumber: 3.2 Consensus size: 157
26032426 ATGAACTCTG
** * *
26032436 TATGCATAAGTCAACCCACAAAACAAGCGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATGCGC
1 TATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCG-TCGAAGAGGCATAATGCGC
* * * * * *
26032501 AAGCCGAGGATCGACCTGGTCCCCCTCCGCGTGCTGCCAGTCTTGCTACCACAACCCTCGGTCCA
65 AAGCCGGGGATCGACC-CGTCCCCCTCTGCGTGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCG
* *
26032566 GCTGGGGCTTAGACATGGAATGAGCTCCC
129 GTTGGGGCTTAGATATGGAATGAGCTCCC
* * ** * * * * *
26032595 TATGCCTAAGCCAACCCATGAAACGATTGTGTGGGCGCTCAGTC-TACCAGAGAGG-AGAATGCG
1 TATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGT-CGA-AGAGGCATAATGCG
* * * * *
26032658 CAAGCCGGGGATCGACCCGAT-CCCCTCTGCGTGCTACCAATCCTGCTGCCGCAACCCTTGGTTC
64 CAAGCCGGGGATCGACCCG-TCCCCCTCTGCGTGCTGCCAGTCCTGCTGCCACAACCCTCGGTCC
** ** * * ** *
26032722 GGTCCGATCTTAGACT-GGGAATGAACAACA
128 GGTTGGGGCTTAGA-TATGGAATGAGCTCCC
* * * * *
26032752 TATGCATAAGTTAACCCATGAAATGAGCGTGCGGGCACTGAACCGGTCGAAGAGGCATATTGCGC
1 TATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCC-GTCGAAGAGGCATAATGCGC
* * * * * *
26032817 AAGACGGGGATCGGCCCAGTCCCCCTCTGCATGCTGCCGGTCCCGCTGCCAAAACCCTCGGTCCG
65 AAGCCGGGGATCGACCC-GTCCCCCTCTGCGTGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCG
26032882 GTTGGGGCTTAGATATGGAATGAGCTCCC
129 GTTGGGGCTTAGATATGGAATGAGCTCCC
* * * *
26032911 TATGCCTAAGCCAACCCACGAAACGGGCGT
1 TATGCATAAGTCAACCCATGAAACGAGCGT
26032941 ACAGGCACTC
Statistics
Matches: 261, Mismatches: 75, Indels: 20
0.73 0.21 0.06
Matches are distributed among these distances:
157 91 0.35
158 52 0.20
159 118 0.45
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (157 bp):
TATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGTCGAAGAGGCATAATGCGCA
AGCCGGGGATCGACCCGTCCCCCTCTGCGTGCTGCCAGTCCTGCTGCCACAACCCTCGGTCCGGT
TGGGGCTTAGATATGGAATGAGCTCCC
Found at i:26033052 original size:11 final size:11
Alignment explanation
Indices: 26033036--26033068 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
26033026 CGATTAGGCT
26033036 CTCCGGTGATG
1 CTCCGGTGATG
26033047 CTCCGGTGATG
1 CTCCGGTGATG
*
26033058 CTCCGGCGATG
1 CTCCGGTGATG
26033069 GTGCCCTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.09, C:0.30, G:0.36, T:0.24
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:26033168 original size:26 final size:26
Alignment explanation
Indices: 26033139--26033191 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26033129 GGCTTAAAAT
* *
26033139 CTTAGAC-TGGGAATGAGCTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
26033165 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26033191 C
1 C
26033192 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26033407 original size:158 final size:157
Alignment explanation
Indices: 26033165--26033666 Score: 526
Period size: 158 Copynumber: 3.2 Consensus size: 157
26033155 GCTTCGTATG
* * *
26033165 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGTGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
26033229 CCGGCCGGAGAGGCAAAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
65 CCGGCCGGAGAGGCAAAATGCGCAAGC-GGGGATCGGCCCGGTCCCCCCTGCGTGATGCCGATCC
* *
26033294 TGCTGCCGCAACCCTTGGTTTGGTCCAAT
129 TGCTGCCGCAACCCTTGGTCTGGTCCGAT
* * * * * *
26033323 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCCCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * * * * * * *
26033388 CGGCCGAAGAGGCATAATGCGCAAGACAGGAATCGGCCCAGTCCCCCTTTGCGTGTTACCGGTCC
66 CGGCCGGAGAGGCAAAATGCGCAAG-CGGGGATCGGCCCGGTCCCCC-CTGCGTGATGCCGATCC
* * * * * **
26033453 CGCTGCCACAACCCTCGGTCT-GACTGGGG
129 TGCTGCCGCAACCCTTGGTCTGGTC-CGAT
* * * * *
26033482 CTTAGA-TATGGAATGAGCTCCCTATGCGTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 CTTAGACT-GGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * *
26033546 CTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGTGTGATGCCGATCC
65 CCGGCCGGAGAGGCAAAATGCGCAAG-CGGGGATCGGCCCGGTCCCCCCTGCGTGATGCCGATCC
* *
26033611 TGCTGCCGCAA-CCTTCGGTCCGATCCGAT
129 TGCTGCCGCAACCCTT-GGTCTGGTCCGAT
26033640 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
26033667 TTAGACTTGG
Statistics
Matches: 270, Mismatches: 66, Indels: 16
0.77 0.19 0.05
Matches are distributed among these distances:
157 4 0.01
158 144 0.53
159 122 0.45
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGGCCGGAGAGGCAAAATGCGCAAGCGGGGATCGGCCCGGTCCCCCCTGCGTGATGCCGATCCTG
CTGCCGCAACCCTTGGTCTGGTCCGAT
Found at i:26033669 original size:26 final size:26
Alignment explanation
Indices: 26033640--26033692 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26033630 CCGATCCGAT
26033640 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACTTGGG-ATGAACTCCGTATG
26033666 CTTAGACTTGGGATGAACTCCGTATG
1 CTTAGACTTGGGATGAACTCCGTATG
26033692 C
1 C
26033693 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTTGGGATGAACTCCGTATG
Found at i:26034414 original size:159 final size:159
Alignment explanation
Indices: 26034121--26035152 Score: 760
Period size: 159 Copynumber: 6.5 Consensus size: 159
26034111 GCTTAGACAT
* ** * * * * * *
26034121 GGAATGAACTCCATATGCCTAAGTCAACCCACAAAACCAGCATGCGGGCACTTAGCCAACCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCAGGCACTGAGCCGACCGAAG
* **
26034186 AGGCA-AGATGCGCAAGTCGGGGATCGACTTGGTCCCCC-CTGCATGCTGTCGATCCTGCTGCTG
66 AGGCATA-ATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTGCATGCTGTCGATCCTGCTGC--
* *
26034249 CA-AACCCTCAGTCCAATTCGATCTCAGACTA
128 CACAACCCTCGGTCCGATTCGATCTCAGACTA
* * * * * *
26034280 GGAATGAACTCCGTATGCGTAAATCAACCCATGAAACAAGCGTGCGGGCGCTGAACCGGCCGAAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCAGGCACTGAGCCGACCGAAG
* * * * *
26034345 AGGCATAATGCGCAAGTCAGGGATCGACCTGGTCCCCCTCTGCATGCTGCCGGTCCCGCTGTCAC
66 AGGCATAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCAC
* * * ** *
26034410 AACCCTTGGTCCGACTGGGGCTTAGAC-A
131 AACCCTCGGTCCGATTCGATCTCAGACTA
* * * ** * * * * *
26034438 TGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCACGCGCTCAGTCGATCGAA
1 -GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCAGGCACTGAGCCGACCGAA
* * *
26034503 GAGGCAGAATGCGTAAG-CCGAGGATCGACCCGGT-CCCCTCTGCATGCTGTCGATCCTGCTGCC
65 GAGGCATAATGCGCAAGTCAG-GGATCGACCCGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCC
* * *
26034566 GA-AACCCTCGGTCTGGTCCGATCTCAGACTA
129 -ACAACCCTCGGTCCGATTCGATCTCAGACTA
* * * * * * * *
26034597 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAA-CGTGCGGGCATTGATCTGACCAAA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA-CAAGCGTGCAGGCACTGAGCCGACCGAA
* * * * * * *
26034661 GAGGCATAATCCGTAAGTCAGGGATCGACCCGATCCCCCTCTGCGTGCTATCGGTCCCGCTGCCA
65 GAGGCATAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCA
* * * ** *
26034726 CAACCTTCGGTCCGACTAGGGCTTAGAC-A
130 CAACCCTCGGTCCGATTCGATCTCAGACTA
* * * * * * * *
26034755 TGGAATGAGCTCCCTATGCCTAAGCCAACCAATGAAA-TAGCCGTGCAGGCACTCAGCCGATCGG
1 -GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAG-CGTGCAGGCACTGAGCCGACCGA
* * * * * * * * * * *
26034819 AGAGGTAGAATGCACAAGCCAGGGATTGACCCAGTCCACC-CTACATGCTATCGATCCTGCTACT
64 AGAGGCATAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCC
* * * * * *
26034883 GCAACCCTCGGTCTGGTCCAATCTCAGACTG
129 ACAACCCTCGGTCCGATTCGATCTCAGACTA
* ** * * *
26034914 GGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCAGGCGCTGATCC-AGTCGAA
1 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCAGGCACTGAGCCGA-CCGAA
* * * * * *
26034978 GAGGCATAATGCGCAAGTCAGGGATTGGCCCCGTCCCCCTCTGCGTGCTGTCGGTCTTGCTGCCA
65 GAGGCATAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCA
* * * ** *
26035043 CAACCTTCGG-CCGACTGGGGCTTAGAC-A
130 CAACCCTCGGTCCGATTCGATCTCAGACTA
* * * ** ** * * * *
26035071 TGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCACTCAACCGATCGGA
1 -GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCAGGCACTGAGCCGACCGAA
*
26035136 GAGGCAGAATGCGCAAG
65 GAGGCATAATGCGCAAG
26035153 CCGAGGATCG
Statistics
Matches: 668, Mismatches: 185, Indels: 41
0.75 0.21 0.05
Matches are distributed among these distances:
157 2 0.00
158 313 0.47
159 333 0.50
160 20 0.03
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCAGGCACTGAGCCGACCGAAG
AGGCATAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCAC
AACCCTCGGTCCGATTCGATCTCAGACTA
Found at i:26034641 original size:158 final size:156
Alignment explanation
Indices: 26034112--26035247 Score: 700
Period size: 158 Copynumber: 7.2 Consensus size: 156
26034102 GCTCCGTATG
* * ** ** * * *
26034112 CTTAGAC-ATGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACCAGCATGCGGGCACTTAG
1 CTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCA-
* * * * ** *
26034176 CCAACCGGAGAGGCA-AGATGCGCAAGTCGGGGATCGACTTGGTCCCCCCTGCATGCTGTCGATC
64 CCGATCGAAGAGGCAGA-ATGCGCAAGTCAGGGATCGACCCGGTCCCCTCTGCATGCTGTCGATC
* * * *
26034240 CTGCTGCTGCAAACCCTCAGTCCAATTCGAT
128 CTGCTGCCG-AAACCCTCGGTCC-GTCCGAT
* * * ** ** * * *
26034271 CTCAGACTAGGAATGAACTCCGTATGCGTAAATCAACCCATGAAACAAGCGTGCGGGCGCTGAAC
1 CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACT-CAC
** * * * *
26034336 CGGCCGAAGAGGCATAATGCGCAAGTCAGGGATCGACCTGGTCCCCCTCTGCATGCTGCCGGTCC
65 CGATCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGT-CCCCTCTGCATGCTGTCGATCC
* * * * * **
26034401 CGCTGTC-ACAACCCTTGGTCCGACTGGGG
129 TGCTGCCGA-AACCCTCGGTCCGTC-CGAT
* * * * *
26034430 CTTAGAC-ATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCACGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCA-
* * *
26034494 TCGATCGAAGAGGCAGAATGCGTAAG-CCGAGGATCGACCCGGTCCCCTCTGCATGCTGTCGATC
64 CCGATCGAAGAGGCAGAATGCGCAAGTCAG-GGATCGACCCGGTCCCCTCTGCATGCTGTCGATC
*
26034558 CTGCTGCCGAAACCCTCGGTCTGGTCCGAT
128 CTGCTGCCGAAACCCTCGGTC-CGTCCGAT
* * * * * * * * *
26034588 CTCAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAACGTGCGGGCATTGATC
1 CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCA-C
* * * * * * * * * *
26034653 TGACCAAAGAGGCATAATCCGTAAGTCAGGGATCGACCCGATCCCCCTCTGCGTGCTATCGGTCC
65 CGATCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGT-CCCCTCTGCATGCTGTCGATCC
* * * * **
26034718 CGCTGCC-ACAACCTTCGGTCCGACTAGGG
129 TGCTGCCGA-AACCCTCGGTCCGTC-CGAT
* *
26034747 CTTAGAC-ATGGAATGAGCTCCCTATGCCTAAGCCAACCAATGAAAT-AGCCGTGCAGGCACTCA
1 CTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAG-CGTGCAGGCACTCA
* * * * * * * *
26034810 GCCGATCGGAGAGGTAGAATGCACAAGCCAGGGATTGACCCAGTCCACC-CTACATGCTATCGAT
64 -CCGATCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCC-CCTCTGCATGCTGTCGAT
* * * * *
26034874 CCTGCTACTGCAACCCTCGGTCTGGTCCAAT
127 CCTGCTGCCGAAACCCTCGGTC-CGTCCGAT
* * * * * * *
26034905 CTCAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCAGGCGCTGATC
1 CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCA-C
* * * * * *
26034970 C-AGTCGAAGAGGCATAATGCGCAAGTCAGGGATTGGCCCCGTCCCCCTCTGCGTGCTGTCGGTC
65 CGA-TCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGT-CCCCTCTGCATGCTGTCGATC
* * * * **
26035034 TTGCTGCC-ACAACCTTCGG-CCGACTGGGG
128 CTGCTGCCGA-AACCCTCGGTCCGTC-CGAT
* ** * *
26035063 CTTAGAC-ATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCACTCAA
1 CTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTC-A
* * * * * ** *
26035127 CCGATCGGAGAGGCAGAATGCGCAAG-CCGAGGATCGGCTCGGT-CCCTCCTGCGTGCTACCGAC
64 CCGATCGAAGAGGCAGAATGCGCAAGTCAG-GGATCGACCCGGTCCCCT-CTGCATGCTGTCGAT
* * * *
26035190 CCTGCTGTCGCAACCCTTGGTACTGTCCGAT
127 CCTGCTGCCGAAACCCTCGGT-CCGTCCGAT
* * *
26035221 CTTAGACTGGGATTGAACTCCATATGC
1 CTTAGACTAGGAATGAACTCCCTATGC
26035248 TTAGACTGAG
Statistics
Matches: 743, Mismatches: 197, Indels: 75
0.73 0.19 0.07
Matches are distributed among these distances:
156 4 0.01
157 30 0.04
158 346 0.47
159 337 0.45
160 26 0.03
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCACC
GATCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCTCTGCATGCTGTCGATCCTG
CTGCCGAAACCCTCGGTCCGTCCGAT
Found at i:26034687 original size:317 final size:316
Alignment explanation
Indices: 26034111--26035247 Score: 1345
Period size: 317 Copynumber: 3.6 Consensus size: 316
26034101 AGCTCCGTAT
* * * ** * * *
26034111 GCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACCAGCATGCGGGCACTTAG
1 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCACTCAG
* * * * ** * *
26034176 CCAACCGGAGAGGCA-AGATGCGCAAGTCGGGGATCGACTTGGTCCCCCCTGCATGCTGTCGATC
66 CCGATCGGAGAGGCAGA-ATGCGCAAGCCGAGGATCGACCCGGTCCCCTCTGCATGCTATCGATC
* * *** * * *
26034240 CTGCTGCTGCAAACCCTCAGTCCAATTCGATCTCAGACTAGGAATGAACTCCGTATGCGTAAATC
130 CTGCTGCCG-AAACCCTCGGTCTGGTCCGATCTCAGACTAGGAATGAACTCCGTATGCATAAGTC
* * *
26034305 AACCCATGAAA-CAAGCGTGCGGGCGCTGAACCGGCCGAAGAGGCATAATGCGCAAGTCAGGGAT
194 AACCCATGAAATGAA-CGTGCGGGCGCTG-ATCGACCGAAGAGGCATAATGCGCAAGTCAGGGAT
* * * *
26034369 CGACCTGGTCCCCCTCTGCATGCTGCCGGTCCCGCTGTCACAACCCTT-GGTCCGACTGGG
257 CGACCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAA-CCTTCGGTCCGACTGGG
** * *
26034429 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCACGCGCTCAG
1 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCACTCAG
* * * *
26034494 TCGATCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCTCTGCATGCTGTCGATCC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCTCTGCATGCTATCGATCC
26034559 TGCTGCCGAAACCCTCGGTCTGGTCCGATCTCAGACTAGGAATGAACTCCGTATGCATAAGTCAA
131 TGCTGCCGAAACCCTCGGTCTGGTCCGATCTCAGACTAGGAATGAACTCCGTATGCATAAGTCAA
* ** * * *
26034624 CCCACGAAATGAACGTGCGGGCATTGATCTGACCAAAGAGGCATAATCCGTAAGTCAGGGATCGA
196 CCCATGAAATGAACGTGCGGGCGCTGATC-GACCGAAGAGGCATAATGCGCAAGTCAGGGATCGA
* * *
26034689 CCCGATCCCCCTCTGCGTGCTATCGGTCCCGCTGCCACAACCTTCGGTCCGACTAGG
260 CCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCTTCGGTCCGACTGGG
* ** ** *
26034746 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCAATGAAATAGCCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCACTCAG
* * * * *
26034811 CCGATCGGAGAGGTAGAATGCACAAGCC-AGGGATTGACCCAGTCCACC-CTACATGCTATCGAT
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGGTCC-CCTCTGCATGCTATCGAT
* * * * *
26034874 CCTGCTACTGCAACCCTCGGTCTGGTCCAATCTCAGACTGGGAATGAACTCCGTATGCATAAGTC
129 CCTGCTGCCGAAACCCTCGGTCTGGTCCGATCTCAGACTAGGAATGAACTCCGTATGCATAAGTC
* * * * *
26034939 AACCCATGAAATGAGCGTGCAGGCGCTGATCCAGTCGAAGAGGCATAATGCGCAAGTCAGGGATT
194 AACCCATGAAATGAACGTGCGGGCGCTGATCGA-CCGAAGAGGCATAATGCGCAAGTCAGGGATC
* * **
26035004 GGCCCCGTCCCCCTCTGCGTGCTGTCGGTCTTGCTGCCACAACCTTCGG-CCGACTGGG
258 GACCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCTTCGGTCCGACTGGG
*
26035062 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCACTCAA
1 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCACTCAG
* * * * *
26035127 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGGT-CCCTCCTGCGTGCTACCGACC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCT-CTGCATGCTATCGATC
* * * * * * *
26035191 CTGCTGTCGCAACCCTTGGTACT-GTCCGATCTTAGACTGGGATTGAACTCCATATGC
130 CTGCTGCCGAAACCCTCGGT-CTGGTCCGATCTCAGACTAGGAATGAACTCCGTATGC
26035248 TTAGACTGAG
Statistics
Matches: 699, Mismatches: 109, Indels: 24
0.84 0.13 0.03
Matches are distributed among these distances:
314 2 0.00
315 1 0.00
316 167 0.24
317 411 0.59
318 117 0.17
319 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCACTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCTCTGCATGCTATCGATCC
TGCTGCCGAAACCCTCGGTCTGGTCCGATCTCAGACTAGGAATGAACTCCGTATGCATAAGTCAA
CCCATGAAATGAACGTGCGGGCGCTGATCGACCGAAGAGGCATAATGCGCAAGTCAGGGATCGAC
CCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCTTCGGTCCGACTGGG
Found at i:26035263 original size:26 final size:26
Alignment explanation
Indices: 26035221--26035273 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26035211 ACTGTCCGAT
26035221 CTTAGACTGGGATTGAACTCCATATG
1 CTTAGACTGGGATTGAACTCCATATG
*
26035247 CTTAGACTGAGGA-TGAACTCCGTATG
1 CTTAGACTG-GGATTGAACTCCATATG
26035273 C
1 C
26035274 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGATTGAACTCCATATG
Found at i:26036397 original size:26 final size:26
Alignment explanation
Indices: 26036361--26036410 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26036351 CCAGTCTAAT
26036361 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
* *
26036387 CTTAGACTGGGGATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
26036411 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:26036856 original size:368 final size:366
Alignment explanation
Indices: 26036181--26037198 Score: 1203
Period size: 368 Copynumber: 2.8 Consensus size: 366
26036171 GGTCCCGCTG
* *
26036181 CCACAACCCTCGGTCCGACTGGTGCTTAGACATGGAATG-AGCTCCTTATGCCTAAGCCAACCCA
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCA
* * * ** * *
26036245 CGAAACGGGCGTCCGAGAGCTCAGTCGGCC-AGAGAGGCAGAATGCTCAAGTCGGGGATTGACTC
65 CGAAACGAGCGTACGGGAGCTCAACCGGCCGA-AGAGGCAGAATGCGCAAGTCGGGGATCGACTC
* *
26036309 -GT-CCCCCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGATCCAGTCTAATCTTAGACTGGG
129 GGTCCCCCCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCGATCCTGTCTAATCTTAGACT-GG
* * *
26036372 AATGAACTCCGTACGCTTAGACTGGGGATGAACTTCGTA-TGCCTAAGTCAACCCATGAAACGAG
193 AATGAACTCCGTATGCTTAGACTAGGGATGAAC-TC-TATTGCCTAAGTCAACCCATGAAATGAG
* * * * *
26036436 CATGCAGACACTCAGCTGACCAGAGAGGCCGATTGGAGAGGCATAATGCGTAAGCCAAGGATCAG
256 CGTGCGGGCACTCAGCTGACCAGAGAGGCCGATCGGAGAGGCATAATGCGTAAACCAAGGATCAG
* * *
26036501 CCCGATCCC-CTTCTACGTGCTGTCGATCCCACT-GCTGGCCCTACTA
321 CCCGATCCCTC-TCTACGTGCTATCGATCCCACTATC-GACCCTACTA
* * * *
26036547 CCACAACCCTCTGTCCGGCTGGGGCTTAGACACGGAATGTAATCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCAC
* * * * * *
26036612 GAAACGAGCGTGCGGGTGGTCAACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGG
66 GAAACGAGCGTACGGGAGCTCAACCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACTCGG
** *
26036677 TCCCCCCTGCGTGCTGTCGATCCTGCTACCACAACCCTCGATCCTGTCTGATCTTAGACTGAGAA
131 TCCCCCCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCGATCCTGTCTAATCTTAGACTG-GAA
* * * *
26036742 TGAACTCTGTATGCTTAGACTAGAGATGAACTCTATTTGCCTAAGCCAACCCACGAAATGAGCGT
195 TGAACTCCGTATGCTTAGACTAGGGATGAACTCTA-TTGCCTAAGTCAACCCATGAAATGAGCGT
* **** * *
26036807 GTGGGCACTCAGCTGGTTGGAGAGGCCGATCGGAGAGGCATAATGCGTAAATCGAGGATCAGCCC
259 GCGGGCACTCAGCTGACCAGAGAGGCCGATCGGAGAGGCATAATGCGTAAACCAAGGATCAGCCC
* * * * * *
26036872 GGTCCCTCTCTACGTGCTATTGATCCCGCTATCGATCCTGCTG
324 GATCCCTCTCTACGTGCTATCGATCCCACTATCGACCCTACTA
** * * *
26036915 CCACAACCCTCGGTTTGACTCGGGCATAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCGC
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCAC
* * * * * *
26036980 GAAACGAGCATACGGGCGTTCAACCGGCCGAAGAGGCAAAATGCGTAAGTCGGGGATCGACTCGA
66 GAAACGAGCGTACGGGAGCTCAACCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACTCGG
* * * * * *
26037045 TCTCTCCTGCGTGCTGTCGATCCT-ATCATCGTGACCCTCGAT-CTGGTCTAATTTTAGACTGGA
131 TCCCCCCTGCGTGCTGTCGATCCTGCT-ACCGTAACCCTCGATCCT-GTCTAATCTTAGACTGGA
*
26037108 ATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTA-TGCCTAAGTCAACCCATGAAATGAGT
194 ATGAACTCCGTATGCTTAGACTAGGGATGAACT-C-TATTGCCTAAGTCAACCCATGAAATGAGC
26037172 GTGCGGGCACTCAG-TCGACCAGAGAGG
257 GTGCGGGCACTCAGCT-GACCAGAGAGG
26037199 AAGGATGTGC
Statistics
Matches: 549, Mismatches: 89, Indels: 27
0.83 0.13 0.04
Matches are distributed among these distances:
366 109 0.20
367 86 0.16
368 350 0.64
369 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (366 bp):
CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTACGGGAGCTCAACCGGCCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACTCGG
TCCCCCCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCGATCCTGTCTAATCTTAGACTGGAAT
GAACTCCGTATGCTTAGACTAGGGATGAACTCTATTGCCTAAGTCAACCCATGAAATGAGCGTGC
GGGCACTCAGCTGACCAGAGAGGCCGATCGGAGAGGCATAATGCGTAAACCAAGGATCAGCCCGA
TCCCTCTCTACGTGCTATCGATCCCACTATCGACCCTACTA
Found at i:26037140 original size:26 final size:25
Alignment explanation
Indices: 26037098--26037148 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
26037088 TGGTCTAATT
26037098 TTAGACTGGAATGAACTCCGTATGC
1 TTAGACTGGAATGAACTCCGTATGC
*
26037123 TTAGACTAGGGATGAACTCCGTATGC
1 TTAGACT-GGAATGAACTCCGTATGC
26037149 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (25 bp):
TTAGACTGGAATGAACTCCGTATGC
Found at i:26038362 original size:26 final size:26
Alignment explanation
Indices: 26038326--26038378 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26038316 CCAGTCCGAT
*
26038326 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26038352 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26038378 C
1 C
26038379 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26038847 original size:368 final size:366
Alignment explanation
Indices: 26038127--26039152 Score: 1181
Period size: 368 Copynumber: 2.8 Consensus size: 366
26038117 CCCCTCTGCG
* * * * *
26038127 TGCTATCGGTCCCGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATG-AGCTCCCT
1 TGCTATCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTA-CTCCAT
* * ** * *
26038191 ATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCACTCAGCCGGCCGGAGAGACAGAATGCGTA
65 ATGCCTAAGCCAACCCATGAAACGGACGTGCGGGTGCTCAGCTGGCCGGAGA-AGAGAATGCGTA
* * * * *
26038256 AGTC-AGGGATCGACCTGGTCCCCCCTGCA-TGCTGTCAATCCTGCTGTCGCAACCTTCGGTCC-
129 AGCCGA-GGATCGACCTGGTCCCCCCT-TAGTGCTGTCGATCCTGCTATCGCAACCTTCGATCCG
* *
26038318 AGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
192 A-TCTGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
* * * * * *
26038383 GTCAACCCACGAAACAAGCGTGCGGGCACTTAACCGACCGGAGAGGCCGATCGGAGGGGCATAAT
255 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCCGATCGGAGAGGCATAAT
* ** *
26038448 GCACAAGTTGAGGATCAACTCGGTTCCCCTCTACATGCTGTTGATCC
320 GCACAAGTAGAGGATCAACTCCATTCCCCTCTACATGCTGTCGATCC
* *
26038495 TGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACGTGGAATGTACTCCATA
1 TGCTATCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCATA
* * * * * * * *
26038560 TGCCTAGGCCGACCCATGAAACGGACGTACGAGTGCTCAGCTAGTCAGAGAAGAGATTGCGTAAG
66 TGCCTAAGCCAACCCATGAAACGGACGTGCGGGTGCTCAGCTGGCCGGAGAAGAGAATGCGTAAG
* * *
26038625 CCGAGGATCGACCCGGTCCCCCCTTATGTGCTGTCGATCCTACTATCGCAACCTTCAATCCGATC
131 CCGAGGATCGACCTGGTCCCCCCTTA-GTGCTGTCGATCCTGCTATCGCAACCTTCGATCCGATC
* *
26038690 TGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGAATGGCTAAGTCA
195 TGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* * ** **
26038754 ACCCACGAAACGAGCGTGTGGGTGCTCAGCCGGTCGAAGAGGCCGATCGGAGAGGCATAATGTGC
259 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCCGATCGGAGAGGCATAATGCAC
*
26038819 AAGTCAG-GGATCAAC-CCATTCCCCCCTCTACGTGCTGTCGATCC
324 AAGT-AGAGGATCAACTCCATT--CCCCTCTACATGCTGTCGATCC
* * * ** * * *
26038863 CGCTACCGGTCCTACTGCCACAACCCTCGGTTTGGCTGGGGCTTTGACGTGGAATGTACTCCGTA
1 TGCTATCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCATA
* * * *
26038928 TGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGTGCTCAGCTGGCCGGAGAGGCAGAATGTGCA
66 TGCCTAAGCCAACCCATGAAACGGA-CGTGCGGGTGCTCAGCTGGCCGGAGAAG-AGAATGCGTA
* ** * * * *
26038992 AGCCGGGGATCGACCTAAT-CCCCCTTACGTGCTG-CTGATCTTGCTACCTCAACCTTCGATCTG
129 AGCCGAGGATCGACCTGGTCCCCCCTTA-GTGCTGTC-GATCCTGCTATCGCAACCTTCGATCCG
* * *
26039055 GTCTGATCTTAGACTGGAATGAACTCCTTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGT
192 ATCTGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
* *
26039120 CAACCCACAAAATGAGCGTGCGGGCGCTCAGCC
257 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
26039153 AACCAGAGAG
Statistics
Matches: 553, Mismatches: 93, Indels: 24
0.83 0.14 0.04
Matches are distributed among these distances:
366 4 0.01
367 148 0.27
368 377 0.68
369 24 0.04
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (366 bp):
TGCTATCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCATA
TGCCTAAGCCAACCCATGAAACGGACGTGCGGGTGCTCAGCTGGCCGGAGAAGAGAATGCGTAAG
CCGAGGATCGACCTGGTCCCCCCTTAGTGCTGTCGATCCTGCTATCGCAACCTTCGATCCGATCT
GATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCCGATCGGAGAGGCATAATGCACAA
GTAGAGGATCAACTCCATTCCCCTCTACATGCTGTCGATCC
Found at i:26040105 original size:159 final size:160
Alignment explanation
Indices: 26039810--26040213 Score: 399
Period size: 159 Copynumber: 2.5 Consensus size: 160
26039800 GCTCCGTATG
* * *
26039810 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
26039875 CAGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGGTCCCCCCTTGCGTGCTGTCGATC
66 CAGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTTGCGTGCTGCCGATC
* *
26039940 CTGCTGCCGCAACCCTTGGTTCGATCCGAT
131 CCGCTGCCACAACCCTTGGTTCGATCCGAT
* *
26039970 CTTAGAC-TGGGAATGAACTCCGTATGCATAAG-TCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
26040033 GTCA-ACCGAAGAGGCATAATGCGCAAG-CTGAGGATTGGCTCGAT-CCCCCTCTGCGTGCTGCC
65 G-CAGACCGAAGAGGCAGAATGCGCAAGTC-GAGGATCGACCCGATCCCCCCT-TGCGTGCTGCC
* * * * * **
26040095 GGTCCCGCTGCCACAACCCTCGGTCCG-GCTGGGG
127 GATCCCGCTGCCACAACCCTTGGTTCGATC-CGAT
* * * * * * *
26040129 CTTAGACATGGAATGAGCTCCCTATGCCTAAG-CCAACCCATGTAATGGGCGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
26040193 CCGGCTGGAGAGGCAGAATGC
66 CAGACCGAAGAGGCAGAATGC
26040214 ATAAGCCGGG
Statistics
Matches: 199, Mismatches: 38, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
158 9 0.05
159 158 0.79
160 32 0.16
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.18
Consensus pattern (160 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CAGACCGAAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTTGCGTGCTGCCGATC
CCGCTGCCACAACCCTTGGTTCGATCCGAT
Found at i:26040297 original size:26 final size:26
Alignment explanation
Indices: 26040256--26040308 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26040246 TGCTATCGAT
26040256 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26040282 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
26040308 C
1 C
26040309 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26040394 original size:312 final size:314
Alignment explanation
Indices: 26039809--26040403 Score: 718
Period size: 312 Copynumber: 1.9 Consensus size: 314
26039799 AGCTCCGTAT
* *
26039809 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCCAACCCATGAAACGAGTGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * *
26039874 GCAGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGGTCCCCCCTTGCGTGCTGTCGAT
66 GCAGGCCGGAGAGGCAGAATGCATAAGCCGGGGATCAACCCAGTCCCCCCTTACGTGCTATCGAT
**
26039939 CCTGCTGCCGCAACCCTTGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
131 CCTGCTG-CGCAA--C-TGGAAC-ATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTC
* * * * * * *
26040004 AACCCACGAAACGAGCGTGCGGGCGCTGAGTCAACCGAAGAGGCATAATGCGCAAGCTGAGGATT
191 AACCCACGAAACAAGAGTGCAGGCGCTCAGTCAACCGAAAAGGCATAATGCGCAAGCCGAGGATC
*
26040069 GGCTCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
256 AGCTCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
* * * *
26040128 GCTTAGACATGGAATGAGCTCCCTATGCCTAAG-CCAACCCATGTAATGGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * **
26040192 GCCGGCTGGAGAGGCAGAATGCATAAGCCGGGGATCAACCCAGTCCCTTC-TACGTGCTATCGAT
66 GCAGGCCGGAGAGGCAGAATGCATAAGCCGGGGATCAACCCAGTCCCCCCTTACGTGCTATCGAT
* * *
26040256 CTTAGACTG-GGAA-T-GAAC-TCCGTATGCTTAGACTAGGG-ATGAACTCCGTATGCCTAAGTC
131 CCT-G-CTGCGCAACTGGAACATCCG-AT-CTTAGACT-GGGAATGAACTCCGTATGCATAAGTC
* * ** * *
26040316 AACCCTCGAAACAAGAGTGCAGGTGCTCAGTCAGTCGAAAAGGCATAATGCGTAAGCCGGGGATC
191 AACCCACGAAACAAGAGTGCAGGCGCTCAGTCAACCGAAAAGGCATAATGCGCAAGCCGAGGATC
* *
26040381 AGCTCGGTCCCCCTTTGCGTGCT
256 AGCTCGATCCCCCTCTGCGTGCT
26040404 ATCGATCCTG
Statistics
Matches: 234, Mismatches: 37, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
310 4 0.02
311 2 0.01
312 103 0.44
313 4 0.02
317 17 0.07
318 70 0.30
319 34 0.15
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (314 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCCAACCCATGAAACGAGCGTGCGGGCGCTCA
GCAGGCCGGAGAGGCAGAATGCATAAGCCGGGGATCAACCCAGTCCCCCCTTACGTGCTATCGAT
CCTGCTGCGCAACTGGAACATCCGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCC
ACGAAACAAGAGTGCAGGCGCTCAGTCAACCGAAAAGGCATAATGCGCAAGCCGAGGATCAGCTC
GATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGG
Found at i:26040654 original size:26 final size:26
Alignment explanation
Indices: 26040611--26040663 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
26040601 CCAGTCCGAT
26040611 CTTAGACTGGGAACGAAC-TCTGTATG
1 CTTAGACTGGGAACGAACTTC-GTATG
*
26040637 CTTAGACTGAGG-ATGAACTTCGTATG
1 CTTAGACTG-GGAACGAACTTCGTATG
26040663 C
1 C
26040664 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTTCGTATG
Found at i:26040761 original size:184 final size:184
Alignment explanation
Indices: 26040452--26040821 Score: 469
Period size: 184 Copynumber: 2.0 Consensus size: 184
26040442 TCCGGTTGGG
*
26040452 GCTTAGACGTGGAATGTACTTCGTATGCCTAAGCCAACCCACGAAACGAACATGCAGGCCCTAAA
1 GCTTAGACGTGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAACATGCAGGCCCTAAA
** * *
26040517 CCGGTCGAAGAGGTAGAATGCGCAAGCTGAGCATCGGTCTGGTCCCCCCTACGTGCTGTCGATCC
66 CCGACCGAAGAGGTAAAATGCGCAAGCTGAGCATCGATCTGGTCCCCCCTACGTGCTGTCGATCC
* * *
26040582 TGCTG-CTGCAACCTTCGATCC-AGTCCGATCTTAGACTGGGAACGAACTCTGTAT
131 TGCTGTC-GCAACCCTCGATCCGA-TCCGATCTTAGACTAGGAACGAACTCCGTAT
* * * * * * * *
26040636 GCTTAGAC-TGAGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACGTG-GAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAACATGCAGGCCCTAA
* * * * * *
26040700 GCTGACCGGAGAGGTAAAATGCGTAAGCTGGGGATCGAAT-TGGTCCCCCCTACGTGCTGTCGAT
65 ACCGACCGAAGAGGTAAAATGCGCAAGCTGAGCATCG-ATCTGGTCCCCCCTACGTGCTGTCGAT
*
26040764 CCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTAT
129 CCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAACGAACTCCGTAT
26040820 GC
1 GC
26040822 ATAAGTCAAC
Statistics
Matches: 159, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
183 2 0.01
184 154 0.97
185 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAGACGTGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAACATGCAGGCCCTAAA
CCGACCGAAGAGGTAAAATGCGCAAGCTGAGCATCGATCTGGTCCCCCCTACGTGCTGTCGATCC
TGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTAGGAACGAACTCCGTAT
Found at i:26040857 original size:158 final size:158
Alignment explanation
Indices: 26040637--26040979 Score: 417
Period size: 158 Copynumber: 2.2 Consensus size: 158
26040627 ACTCTGTATG
* *
26040637 CTTAGACTGAGG-ATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACT-AGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * *** * *
26040701 -CTGACCGGAGAGGTAAAATGCGTAAG-CTGGGGATCGAATTGGTCCCCCCTACGTGCTGTCGAT
65 TC-GACCGGAGAGACAAAATGCGCAAGTC-GGGGATCGAACCAGTCCCCCCTACGTGCTATCGAA
*
26040764 CCTGCTGTCGCA-A-CCCTCGATCCGATCCGAT
128 CCTGCT-AC-CATATCCCTCGATCCGATCCGAT
* *
26040795 CTTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGT
1 CTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
** * **
26040860 CGGTCGGAGAGACAGAATGCGCAAGTCGGGGATCGGGCCAGTCCCCCCTACGTGCTATCGAACCT
66 CGACCGGAGAGACAAAATGCGCAAGTCGGGGATCGAACCAGTCCCCCCTACGTGCTATCGAACCT
* *
26040925 GCTACCATATCCTTCGATCCGGTCCGAT
131 GCTACCATATCCCTCGATCCGATCCGAT
*
26040953 CTTAGACTAGCAATGAACTTCGTATGC
1 CTTAGACTAGGAATGAACTTCGTATGC
26040980 TTAGACTGGG
Statistics
Matches: 158, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
156 2 0.01
157 5 0.03
158 149 0.94
159 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGACCGGAGAGACAAAATGCGCAAGTCGGGGATCGAACCAGTCCCCCCTACGTGCTATCGAACCT
GCTACCATATCCCTCGATCCGATCCGAT
Found at i:26040943 original size:342 final size:348
Alignment explanation
Indices: 26040252--26041409 Score: 889
Period size: 342 Copynumber: 3.3 Consensus size: 348
26040242 TACGTGCTAT
*
26040252 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-AGGGATGAACTCCGTATGCCTAAGTC
1 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGA-GGATGAACTCCGTATGCCTAAGTC
* * * * * * * * *
26040316 AACCC-TCGAAACAAGAGTGCAGGTGCTCAG-TCAGTCGAAAAGGCATAATGCGTAAGCCGGGGA
65 AACCCAT-GAAACGAGCGTGCGGGCGCTCAGCTGA-TCGGAGAGGTAAAATGCGTAAGCCGGGGA
* * *
26040379 TCAGCTCGGTCCCCCTTTGCGTGCTATCGATCCTGCTGCCGGTCCTGCTACCACATCCCTCGATC
128 TCAGATCGGTCCCCCTCTACGTGCTATCGATCCTGCT--C-GTCCTG---CCACATCCCTCGATC
* ** * * * *
26040444 CGGTTGGGGCTTAGACGTGGAATGTACTTCGTATGCCTAAGCCAACCCACGAAACGAACATGCAG
187 CGATCCGAGCTTAGACGTGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACATGCAG
** * **
26040509 GCCCTAAACCGGTCGAAGAGGTAGAATGCGCAAGCTGAGCATCGGTCTGGTCCCCCCTACGTGCT
252 GCCCTAAACCGGTCGAAGAGACAGAATGCGCAAGCTGAGCATCGGGCCAGTCCCCCCTACGTGCT
* * *
26040574 GTCGATCCTGCTGCTGCAACCTTCGATCCAGTC
317 ATCGAACCTGCTAC-GCAACCTTCGATCCAGTC
* *
26040607 CGATCTTAGACTGGGAACGAACTCTGTATGCTTAGACTGAGGATGAACTTCGTATGCCTAAGTCA
1 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCA
* *
26040672 ACCCATGAAACGAGCGTGCGGGCGCTCAGCTGACCGGAGAGGTAAAATGCGTAAGCTGGGGATC-
66 ACCCATGAAACGAGCGTGCGGGCGCTCAGCTGATCGGAGAGGTAAAATGCGTAAGCCGGGGATCA
* *
26040736 GAATTGGTCCCCC-CTACGTGCTGTCGATCCTGCT-GT-C-G-CA-A-CCCTCGATCCGATCCGA
131 G-ATCGGTCCCCCTCTACGTGCTATCGATCCTGCTCGTCCTGCCACATCCCTCGATCCGATCCGA
* * * * ** * *
26040794 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCA
195 GCTTAGACGT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACATGCAGGCCCTAA
** * * *
26040858 GTCGGTCGGAGAGACAGAATGCGCAAG-TCGGGGATCGGGCCAGTCCCCCCTACGTGCTATCGAA
259 ACCGGTCGAAGAGACAGAATGCGCAAGCT-GAGCATCGGGCCAGTCCCCCCTACGTGCTATCGAA
*
26040922 CCTGCTAC-CATATCCTTCGATCCGGTC
323 CCTGCTACGCA-A-CCTTCGATCCAGTC
* * * *
26040949 CGATCTTAGACTAGCAATGAACT-TCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTC
1 CGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTC
** * * * *
26041013 AACCCACAAAACGAGCTTGAGGGCGCTTAGCGGATCGGAGAGGTCGGCCAGAGAGGCATAATGCG
65 AACCCATGAAACGAGCGTGCGGGCGCTCAGCTGATCGGAGAGGT---------A---A-AATGCG
* * * ** * * *
26041078 CAAGCCAGGGATTAGCCCGGTCCCCCTTTACGTGCTGTCGATCCTACTACCGTTCCTGCTACCAC
117 TAAGCCGGGGATCAGATCGGTCCCCCTCTACGTGCTATCGATCCTGCT--CG-TCCTG---CCAC
* * * ** * * ** * *
26041143 AACCCTCGGTCCGGTTGGGGCTTAGACATGGAATTTACTTCGTATGCCTAAGCCAACCCACGAAA
176 ATCCCTCGATCCGATCCGAGCTTAGACGTGGAATGAACTCCGTATGCATAAGCCAACCCACGAAA
* * * * * * * * * * * * *
26041208 CGAGCGTGCGGGCGCTCAATCAG-CCAGAGAGGCAGAATGCGCAAGCTGGGGATC-GACCCGATC
241 CGAACATGCAGGCCCTAAACCGGTCGA-AGAGACAGAATGCGCAAGCTGAGCATCGGGCCAG-TC
* * * * *
26041271 CCCTCTGA-GTGCTGTCGATCCTGCTACCGCAACCTTCAAT-CTGATC
304 CCCCCT-ACGTGCTATCGAACCTGCTA-CGCAACCTTCGATCCAG-TC
* ** *
26041317 TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG-GGCATGAACTCCGTATGCCTAAGTT
1 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGAGG-ATGAACTCCGTATGCCTAAGTC
* * *
26041381 AACCCACGAAACGAGCGTACGGGCACTCA
65 AACCCATGAAACGAGCGTGCGGGCGCTCA
26041410 ACCGACCAGA
Statistics
Matches: 650, Mismatches: 107, Indels: 79
0.78 0.13 0.09
Matches are distributed among these distances:
340 2 0.00
341 4 0.01
342 227 0.35
343 1 0.00
344 2 0.00
348 1 0.00
349 1 0.00
350 2 0.00
351 1 0.00
354 20 0.03
355 140 0.22
356 24 0.04
359 1 0.00
360 1 0.00
361 1 0.00
362 1 0.00
366 2 0.00
367 10 0.02
368 202 0.31
369 5 0.01
370 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (348 bp):
CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCA
ACCCATGAAACGAGCGTGCGGGCGCTCAGCTGATCGGAGAGGTAAAATGCGTAAGCCGGGGATCA
GATCGGTCCCCCTCTACGTGCTATCGATCCTGCTCGTCCTGCCACATCCCTCGATCCGATCCGAG
CTTAGACGTGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACATGCAGGCCCTAAAC
CGGTCGAAGAGACAGAATGCGCAAGCTGAGCATCGGGCCAGTCCCCCCTACGTGCTATCGAACCT
GCTACGCAACCTTCGATCCAGTC
Found at i:26041357 original size:26 final size:26
Alignment explanation
Indices: 26041321--26041373 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26041311 CTGATCTGAT
26041321 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26041347 CTTAGACTGGGCATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26041373 C
1 C
26041374 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26042401 original size:159 final size:157
Alignment explanation
Indices: 26042069--26042516 Score: 443
Period size: 159 Copynumber: 2.8 Consensus size: 157
26042059 AGCTTCATAT
* * ** * * *
26042069 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACAAAACGAGCGTGAGGGTGCTCAA
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
26042134 CCGACCGGAGAGGTAGAATGTGCAAGCTGGGGATCGACCCGATCCCCCGCTACATGCTGTCGATC
66 CCGACCGAAGAGGCAGAATGTGCAAGCTGGGGATCG-CCCGATCCCCC-CTACGTGCTGTCGATC
** **
26042199 TTACTGTCACAACCCTCAGTCCGGTCTGA
129 CCACTACCACAACCCTCAGTCCGGTCTGA
* * * * * *
26042228 TCTTACACCA-GGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGAGTGCGGGCACTGA
1 GCTTACA-CATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * *
26042292 GCCGGCCGAAGAGGCATAATGCGCAAGTTGGGGATCAGCCCGATCCCCCTCTACGTGCTGTCGAT
65 GCCGACCGAAGAGGCAGAATGTGCAAGCTGGGGATC-GCCCGATCCCCC-CTACGTGCTGTCGAT
* ** * *
26042357 CCCGCTACCACAACCCTTGGTCTGG-CTAGG
128 CCCACTACCACAACCCTCAGTCCGGTCT-GA
* * * * *
26042387 GCTTATACATGGAATGAGCTCCCTATGCCTATGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
26042452 CCGACC-AGAGAGACAGAATGTGCAAGCCGAGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATC
66 CCGACCGA-AGAGGCAGAATGTGCAAGCTGGGGATC-GCCCGATCCCCCCTACGTGCTGTCGATC
26042516 C
129 C
26042517 TGCTGTCGTA
Statistics
Matches: 232, Mismatches: 52, Indels: 11
0.79 0.18 0.04
Matches are distributed among these distances:
158 21 0.09
159 208 0.90
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCGAAGAGGCAGAATGTGCAAGCTGGGGATCGCCCGATCCCCCCTACGTGCTGTCGATCCC
ACTACCACAACCCTCAGTCCGGTCTGA
Found at i:26042587 original size:26 final size:26
Alignment explanation
Indices: 26042546--26042597 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26042536 CCAGTCCAAT
26042546 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26042572 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
26042598 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.