Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 269 of 402
Found at i:26042878 original size:346 final size:339
Alignment explanation
Indices: 26042241--26043316 Score: 1059
Period size: 346 Copynumber: 3.1 Consensus size: 339
26042231 TACACCAGGA
* * *
26042241 ATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGAGTGCGGGCACTGAGCCGGCCGAAGAGG
1 ATGAACTCCGTATGC-TAAGTCAACCCATGAAACGAGCGTGCGGG-AC--AGTCGGCAGAA-AGG
*** * * * *
26042306 CATAATGCGCAAGTTGGGGATCAGCCC-GATCCCCCTCTACGTGCTGTCGATCCCGCTAC--CAC
61 CATAATGCGCAAGGCAGGGATCAGCCCAG-TCCCCCTCTGCATGCTGCCGATCCCGCTGCTACAC
* * * * * * *
26042368 AACCCTTGGTCTGGCTAGGGCTTATACATGGAATG-AGCTCCCTATGCCTATGCCAACCCATGAA
125 AACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAACCCACGAA
* * * * * *
26042432 ACGGGCGTGCGGGCGCTCAGCCGACCAGAGAGACAGAATGTGCAAGCCGAGGATCGGCTCGGTCC
189 ACGAGCGTGCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGTAAGCCGAGGATC-GCTCGATCC
* * *
26042497 CCCCTGCGTGCTGTCGATCCTGCTG-TCGTAACCCTCGATCCAGTCCAATCTTAGACTGGGAATG
253 CCCCTGCGTGCTATCGATCCTGCTGCT-GCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATG
26042561 AACTCCGTATGCTTAGACTAGGG
317 AACTCCGTATGCTTAGACTAGGG
*
26042584 ATGAACTCCGTATGTCTAAGTCAACCCATGAAACGAGCGTGCGGG-C-G-CTG-A-AAAGGCATA
1 ATGAACTCCGTATG-CTAAGTCAACCCATGAAACGAGCGTGCGGGACAGTCGGCAGAAAGGCATA
* * * * *
26042644 ATGCGCAA-GCTGGGGATTAGCCGAGTCCCCCTCTGCATGCTATCGATCCCGCTACCGGTCCTGC
65 ATGCGCAAGGC-AGGGATCAGCCCAGTCCCCCTCTGCATGC--T-G---CCGAT-CCCG--CTGC
* * *
26042708 TACAACAACCCTCGATTTGGCTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCC
120 TAC-ACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCC
* * **
26042773 ACGAAATGAGCGTGCGGGCGCTCAGCCGGTCAGAGAGGCAGAATGCGTAAG-TTAGGGATCAGCT
184 ACGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGTAAGCCGA-GGATC-GCT
** * *
26042837 CGATCCCCCCTGCGTGCTATTAATCCTGCTGCTGCAACCCTCGATCCTGTTCGATCTTATG-CTG
247 CGATCCCCCCTGCGTGCTATCGATCCTGCTGCTGCAACCCTCGATCCAGTCCGATCTTA-GACTG
*
26042901 GGAATGAACTCCGTATGCTTAGACTCGGG
311 GGAATGAACTCCGTATGCTTAGACTAGGG
* * * * *
26042930 ATGAACTCCGTATGCCTAAGTCGACCCACGAAATGAGCGTACGGGATCGAAGAGGTCGGCCAGAG
1 ATGAACTCCGTATG-CTAAGTCAACCCATGAAACGAGCGTGCGGGA-C----A-GTCGG-CAGAA
* * *
26042995 AGGCATAATGCGTAAGGCAGGGATCAGCCCAGTCCTCCTCTGCGTGCTGCCGATCCCGCTGC--C
58 AGGCATAATGCGCAAGGCAGGGATCAGCCCAGTCCCCCTCTGCATGCTGCCGATCCCGCTGCTAC
* ** *
26043058 ACAACCCTCGGTCCGATTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCTAACCCACGA
123 ACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGA
* ** * * * * *
26043123 AACGAGTGTATGGGTGCTCAGTCGATC-GAACAGGCAAAATGCGTAAGCCGAGGATCGATCTGAT
188 AACGAGCGTGCGGGCGCTCAGCCGATCAG-AGAGGCAGAATGCGTAAGCCGAGGATCGCTC-GAT
* * * ** *
26043187 CCCCCCTACGTGCTACCGATCCTACTGCTGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAAT
251 CCCCCCTGCGTGCTATCGATCCTGCTGCTGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAAT
* * *
26043252 GAACTCTGTATGCTTAGATTGGGG
316 GAACTCCGTATGCTTAGACTAGGG
*
26043276 ATGAACTCCGTATGCTTAAGTCAACCCATGAAACGAACGTG
1 ATGAACTCCGTATGC-TAAGTCAACCCATGAAACGAGCGTG
26043317 TGAGCGCTCA
Statistics
Matches: 603, Mismatches: 93, Indels: 71
0.79 0.12 0.09
Matches are distributed among these distances:
334 38 0.06
335 3 0.00
336 1 0.00
337 3 0.00
338 1 0.00
340 3 0.00
341 4 0.01
343 45 0.07
344 1 0.00
345 8 0.01
346 432 0.72
347 5 0.01
348 1 0.00
349 4 0.01
351 3 0.00
352 4 0.01
354 1 0.00
355 3 0.00
356 1 0.00
357 1 0.00
358 39 0.06
359 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (339 bp):
ATGAACTCCGTATGCTAAGTCAACCCATGAAACGAGCGTGCGGGACAGTCGGCAGAAAGGCATAA
TGCGCAAGGCAGGGATCAGCCCAGTCCCCCTCTGCATGCTGCCGATCCCGCTGCTACACAACCCT
CGGTCTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
TGCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGTAAGCCGAGGATCGCTCGATCCCCCCTGCG
TGCTATCGATCCTGCTGCTGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTA
TGCTTAGACTAGGG
Found at i:26043267 original size:26 final size:26
Alignment explanation
Indices: 26043238--26043293 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
26043228 CTGGTCTGAT
*
26043238 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26043264 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26043290 CTTA
1 CTTA
26043294 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26044495 original size:26 final size:26
Alignment explanation
Indices: 26044466--26044518 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26044456 CCAATCCGAT
*
26044466 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26044492 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26044518 C
1 C
26044519 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26044877 original size:25 final size:26
Alignment explanation
Indices: 26044833--26044884 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
26044823 CCGGTCTGAT
26044833 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
26044859 CTTAGACT-GGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26044884 C
1 C
26044885 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26045021 original size:366 final size:366
Alignment explanation
Indices: 26044463--26045287 Score: 946
Period size: 366 Copynumber: 2.2 Consensus size: 366
26044453 GGTCCAATCC
*
26044463 GATCTTAGACTGGGAATGAATTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACT-GGAATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAA
* * * * *
26044528 CCCACGAAACAAGCGTGCGGGCGCTTAACCGACCGGAGAGGCCGACCGGAGGGGCGTAATGCACA
64 CCCACGAAACAAGCATGCGGGCGCTCAACCGACCGAAGAGGCCGACCGGAGAGGCATAATGCACA
* ** * ** *
26044593 AGCTGAGGATCAACTCGGTTCCCCTCTACATGCTACCGATCCTACTGTCGGTCCTGCTGCCACAA
129 AGCAGAGGATCAACTCCATTCCCCTCTACATGCTACCGATCCCACTACCGATCCTGCTGCCACAA
* * *
26044658 CCCTC-GATCCAACTGGGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCGACCCATGAAAC
194 CCCTCAG-TCCAACTGGGGCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCCACGAAAC
* * * *
26044722 G-GACGTACGAGTGCTCAGCTAGTCAGAGAGG-AGATTGCGTAAGCC-GAGGATCGACCCGATCC
258 GAG-CGTACGAGTGCTCAGCTAGCCAGAGAGGCAGAATGCGCAAGCCAG-GGATCGACCCAATCC
* * *
26044784 CCCTTATGTGCTG-TCGATCCTACTATCGCAACCTTCAATCCGGTCT
321 CCCTTACGTGCTGCT-GATCCTACTACCGCAACCCTCAATCCGGTCT
26044830 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAAC
1 GATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * * ** * ** **
26044895 CCATGAAACGAGCATGTGGGTGCTCAGCCGGTCGAAGAGGTCGGTCGGAGAGGCATAATGTGCAA
65 CCACGAAACAAGCATGCGGGCGCTCAACCGACCGAAGAGGCCGACCGGAGAGGCATAATGCACAA
* ** *
26044960 GTCAG-GGATCAAC-CCATTCCCTCTCTACGTGCTGTCGATCCCGCTACCGATCCTGCTGCCACA
130 G-CAGAGGATCAACTCCATTCCC-CTCTACATGCTACCGATCCCACTACCGATCCTGCTGCCACA
**** * *
26045023 ACCCTCAGTTTGGCTGGGGCTTTGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAAC
193 ACCCTCAGTCCAACTGGGGCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCCACGAAAC
* * * * * *
26045088 GAGCGTCCGGGTGCTCAGCTGGCCGGAGAGGCAGAATGTGCAAGCCAGGGATCGACCTAATCCCC
258 GAGCGTACGAGTGCTCAGCTAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAATCCCC
* * * * **
26045153 CTTACGTGCTGCTGATCTTGCTACCTCAACCCTCGATTTGGTCT
323 CTTACGTGCTGCTGATCCTACTACCGCAACCCTCAATCCGGTCT
* *
26045197 GATCTTAGACTGGAATGAACTCCTTATGCTTAGACTGGAGATGAACTCTGTATGCCTAAGTCAAC
1 GATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGG-GATGAACTCCGTATGCCTAAGTCAAC
* *
26045262 CCACAAAACGAA-CGTGCGGGCGCTCA
65 CCACGAAAC-AAGCATGCGGGCGCTCA
26045288 GCCAACCAGA
Statistics
Matches: 383, Mismatches: 66, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
365 6 0.02
366 222 0.58
367 152 0.40
368 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (366 bp):
GATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACC
CACGAAACAAGCATGCGGGCGCTCAACCGACCGAAGAGGCCGACCGGAGAGGCATAATGCACAAG
CAGAGGATCAACTCCATTCCCCTCTACATGCTACCGATCCCACTACCGATCCTGCTGCCACAACC
CTCAGTCCAACTGGGGCTTAGACATGGAATGTACTCCATATGCCTAAGCCAACCCACGAAACGAG
CGTACGAGTGCTCAGCTAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAATCCCCCTT
ACGTGCTGCTGATCCTACTACCGCAACCCTCAATCCGGTCT
Found at i:26046732 original size:264 final size:264
Alignment explanation
Indices: 26046247--26046741 Score: 640
Period size: 264 Copynumber: 1.9 Consensus size: 264
26046237 TGCCGGTCTC
* * **
26046247 GCTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACTTGGAATGAGCTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACGTGGAATGAGCTCAATATGCCTAAGCCAAC
* * *
26046312 CCACGAAACGGGCGTGCGGGCACTCAACCGGCTGGAAAGGCCGAATGCGTAAGCCGAGGATCAGC
66 CCACGAAACGAGCGTGCGGGCACTCAACCGGCTGGAAAGGCAGAATGCGCAAGCCGAGGATCAGC
* * *
26046377 CCGGTCCCCCTGCATGCTACGGATCCTACTACCGTAACCCTCGATCCGGTCTGATCATAGACTAG
131 CCGGTCCCCCTGCATGCTACGGATCCTACTACCGCAACCCTCGATCCAGTCCGATCATAGACTAG
**
26046442 GAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCCTCTACACGCTGTCAATCCCGCTGTCGG
196 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCCTCTACACGCTGTCAATCCCGCTGTCGG
26046507 TCCT
261 TCCT
*
26046511 GCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGAGGTGGAATGTA-CTCAATATGCCTAAGCCAA
1 GCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACGTGGAATG-AGCTCAATATGCCTAAGCCAA
* * ** * * * * *
26046575 CGCACGACACGAGCGTGCGGGTGCTCAA-CTGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
65 CCCACGAAACGAGCGTGCGGGCACTCAACCGGCT-GGAAAGGCAGAATGCGCAAGCCGAGGATCA
* * * * * *
26046639 GCCTGGTCTCCCCTGCGTGC-A-GTCGATCCTGCTGCCGCAACCCTCGATCTAGTCCGATCTTAG
129 GCCCGGTC-CCCCTGCATGCTACG--GATCCTACTACCGCAACCCTCGATCCAGTCCGATCATAG
* *
26046702 ACTGGGAATGAACTCCATATGGTT-GACTGGGGATGAACTC
191 ACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTC
26046742 TGTATGCCTA
Statistics
Matches: 196, Mismatches: 30, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
263 4 0.02
264 129 0.66
265 63 0.32
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (264 bp):
GCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACGTGGAATGAGCTCAATATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCACTCAACCGGCTGGAAAGGCAGAATGCGCAAGCCGAGGATCAGC
CCGGTCCCCCTGCATGCTACGGATCCTACTACCGCAACCCTCGATCCAGTCCGATCATAGACTAG
GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCCTCTACACGCTGTCAATCCCGCTGTCGG
TCCT
Found at i:26048283 original size:26 final size:26
Alignment explanation
Indices: 26048254--26048303 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26048244 CCGGTCTAAT
*
26048254 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
26048280 CTTAGACTGGGAATAAACTTCGTA
1 CTTAGACTGGGAATAAACTCCGTA
26048304 CGCCTAATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:26049014 original size:26 final size:26
Alignment explanation
Indices: 26048976--26049028 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26048966 GGCTTAAAAT
*
26048976 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26049002 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
26049028 C
1 C
26049029 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26049512 original size:26 final size:26
Alignment explanation
Indices: 26049470--26049522 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26049460 CCGGTTTGAT
26049470 CTTAGACTAGGATTGAACTCCATATG
1 CTTAGACTAGGATTGAACTCCATATG
* *
26049496 CTTAGACTGGGGA-TGAACTCCGTATG
1 CTTAGACT-AGGATTGAACTCCATATG
26049522 C
1 C
26049523 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGATTGAACTCCATATG
Found at i:26051098 original size:158 final size:157
Alignment explanation
Indices: 26050599--26051098 Score: 421
Period size: 158 Copynumber: 3.2 Consensus size: 157
26050589 GCTCCGTATG
* * *
26050599 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTGCAAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * * * * * *
26050664 CGGCTGGAGAGGTAGAATGTGTAAGCCGGGGATTGACCCGATCCCGCCTGCATGCTATCGATCCT
66 CGACCGAAGAGGTAAAATGCGTAAGCCGGGGATTGGCCCGGTCCC-CCTGTATGCTACCGATCCT
* * * * **
26050729 GCTACCCCAACCATCAGTCCGGTTTGAT
130 GCTGCCACAACCCTCGGTCCGGTCCGAT
* * * * * * *
26050757 CTTAGAC-TGGAATGAACTCCGTATGCATAAGTCAACCGATGAAACGAGCGTCCGGGCGCTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * ** * * *** * *
26050821 CGATCGAATAGGCATAATGCACAAGCCGGTGATTGGCCCGGTCCCCTCTGTATTCTGGAGGTCCG
66 CGACCGAAGAGGTAAAATGCGTAAGCCGGGGATTGGCCCGGTCCCC-CTGTATGCTACCGATCCT
* * * **
26050886 GCTGCCACAACCCTCGATCCAG-CTGGGG
130 GCTGCCACAACCCTCGGTCCGGTC-CGAT
* * * * * * *
26050914 CTTAGACATGAAATGAGCTCCCTATGCCGAAGCCAACCCACAAAACGAGCGTGCTGGCGTTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * *
26050979 CGACCGCAGAGGTAAAATGCGTAAGTCGGGGATCGGCCCGGTCCCACCTGTGTGCTACCGATCCT
66 CGACCGAAGAGGTAAAATGCGTAAGCCGGGGATTGGCCCGGTCCC-CCTGTATGCTACCGATCCT
**
26051044 GCTGCGGCAACCCTCGGTCCGGTCCGAT
130 GCTGCCACAACCCTCGGTCCGGTCCGAT
*
26051072 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
26051099 TTAGACTGGG
Statistics
Matches: 255, Mismatches: 81, Indels: 12
0.73 0.23 0.03
Matches are distributed among these distances:
156 1 0.00
157 115 0.45
158 137 0.54
159 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGACCGAAGAGGTAAAATGCGTAAGCCGGGGATTGGCCCGGTCCCCCTGTATGCTACCGATCCTG
CTGCCACAACCCTCGGTCCGGTCCGAT
Found at i:26051108 original size:26 final size:26
Alignment explanation
Indices: 26051072--26051124 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26051062 CCGGTCCGAT
*
26051072 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26051098 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26051124 C
1 C
26051125 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26051571 original size:368 final size:365
Alignment explanation
Indices: 26050887--26051911 Score: 1201
Period size: 368 Copynumber: 2.8 Consensus size: 365
26050877 GGAGGTCCGG
* * * * *
26050887 CTGCCACAACCCTCGATCC-AGCTGGGGCTTAGACATGAAATGAGCTCCCTATGCCGAAGCCAAC
1 CTGCCACAACCCTCGATCCGA-CTGGGGCTTAAACATGGAATGA-CTTCGTATGCCTAAGCCAAC
* * * * * * * * *
26050951 CCACAAAACGAGCGTGCTGGCGTTCAGCCGACCGCAGAGGTAAAATGCGTAAGTCGGGGATCGGC
64 CCACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGTAGAATGCGTAAGCCGAGGATC-GC
* * * * *
26051016 CCGGTCCCACCTGTGTGCTACCGATCCTGCTGCGGCAACCCTCGGTCCGGTCCGATCTTAGACTG
128 CTGATCCC-CCTGCGTGCTACCGATCCTGCTGCGGCAACCCTTGATCCGGTCCGATCTTAGACTG
*
26051081 GGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA
192 GGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * *
26051146 GCGTACGGACGCTCAGCCGACCGGAGAGGCCGGTCGGAGAGGCATAATGCACAAGTCGGGGATCA
257 GCGTGCGGGCGCTCAGCCAACCGGAGAGGCCGATCGGAGAGGCATAATACACAAGTCGGGGATCA
* * * *
26051211 GCCCGAT-CCCTCTCTGCATGCTATCGATCCCACTGCCGGTCCTG
322 GCCCGATACCC-CTCTACATGCTACCGATCCCACTGCCGATCCTA
* *
26051255 TTGCCACAACCCTCGGTCCGACTGGGGCTTAAACATGGAATTGACTTCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCGACTGGGGCTTAAACATGGAA-TGACTTCGTATGCCTAAGCCAACC
* * **
26051320 CACGAAACAAGCGTGCGGGCGCTCCGTCGATCGGAGAGGTAGAATGCGTAAGCCGAGGATCAATC
65 CACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGTAGAATGCGTAAGCCGAGGATC-GCC
* * * * * * *
26051385 TGATCCTCCCTACATGCTACCTATCCTGCAGTC-ACAACCCTTAATCCGGTCCAATCTTAGACTG
129 TGATCC-CCCTGCGTGCTACCGATCCTGCTG-CGGCAACCCTTGATCCGGTCCGATCTTAGACTG
* * * *
26051449 GGAATGAACTCTGTATGCTTCGACTGAGGATGAACTCCGTATGGCTAAGTCAACCCATGAAACGA
192 GGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * **
26051514 GCGTGTGGGCACTCAGTCAATCGGAGAGGCTGATCGGAGAGGCATAATATGCAAGTCGGGGATCA
257 GCGTGCGGGCGCTCAGCCAACCGGAGAGGCCGATCGGAGAGGCATAATACACAAGTCGGGGATCA
* * * * *
26051579 GCCTGGTACCCCTCTACATGCTGCCGATCTCGCTGCCGATCCTA
322 GCCCGATACCCCTCTACATGCTACCGATCCCACTGCCGATCCTA
* * * * *
26051623 CTACCACAACCCTCGATCTGACTGGGGCTTACACGTGGAATGTACTTTGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCGACTGGGGCTTAAACATGGAATG-ACTTCGTATGCCTAAGCCAACC
* * * * * *
26051688 CATGAAACGAGCGTGCGGGCACTCAGTCGGTGGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCT
65 CACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGTAGAATGCGTAAGCCGAGGATCGCCT
* * * **
26051753 CGATCCCCCCTGCGTGCTACCGATCCTACTGCTGCAACCCTTGATCCGATTTGATCTTAGACTGG
130 -GAT-CCCCCTGCGTGCTACCGATCCTGCTGCGGCAACCCTTGATCCGGTCCGATCTTAGACTGG
** * *
26051818 GAATGAACTCCATATGCTTAGACTGGGGATGAACACCATATGCCTAAGTCAACCCACGAAACGAG
193 GAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* *
26051883 CGTGCGGGCGCTCAGCCGACCAGAGAGGC
258 CGTGCGGGCGCTCAGCCAACCGGAGAGGC
26051912 AGGATGCACA
Statistics
Matches: 548, Mismatches: 100, Indels: 18
0.82 0.15 0.03
Matches are distributed among these distances:
367 5 0.01
368 532 0.97
369 11 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (365 bp):
CTGCCACAACCCTCGATCCGACTGGGGCTTAAACATGGAATGACTTCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGTAGAATGCGTAAGCCGAGGATCGCCTG
ATCCCCCTGCGTGCTACCGATCCTGCTGCGGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAA
TGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
GCGGGCGCTCAGCCAACCGGAGAGGCCGATCGGAGAGGCATAATACACAAGTCGGGGATCAGCCC
GATACCCCTCTACATGCTACCGATCCCACTGCCGATCCTA
Found at i:26051844 original size:26 final size:26
Alignment explanation
Indices: 26051808--26051860 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26051798 CCGATTTGAT
*
26051808 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
*
26051834 CTTAGACTGGGGATGAACACCATATG
1 CTTAGACTGGGAATGAACACCATATG
26051860 C
1 C
26051861 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:26053008 original size:158 final size:156
Alignment explanation
Indices: 26052508--26053008 Score: 477
Period size: 158 Copynumber: 3.2 Consensus size: 156
26052498 GCTTCATATG
* * * * *
26052508 CTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACGGAATGAGCGTGTGGGTGCTCAGT
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
26052573 CGGTCGGAGAGGCAAAATGCGCAAGCTGAGGATCGACCCGATCCCCCCTACGTGTTGTCGATCCT
65 CGGCCGGAGAGGCAAAATGCGCAAG-TGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC-
* * **
26052638 G-CTGCCACAACCCTCGATCCGGTCCAAT
128 GACTGCCACAACCCTCGGTCTGGTCTGAT
* * * * * * * *** *
26052666 CTTAGACTGGAATGAACTTCGTATACATAAGTCAACCCATGAAACAAGCGTATC-GACACTGAGC
1 CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT-GCGGGTGCTCAGC
* * * * * *
26052730 TGGCCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGATCCCCCTCTGCGGGCTGCTGGTCC
65 CGGCCGGAGAGGCAAAATGCGCAAGT-GGGGATCGACCCGATCCCCC-CTGCGTGCTGCCGATCC
* * **
26052795 CACTGCCACAACCCTCGGTTTGG-CTAGGG
128 GACTGCCACAACCCTCGGTCTGGTCT-GAT
* * * *
26052824 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTTAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
* * * * *
26052889 CGGCCGGAGAGGCAGAATACACAAGATGGGGATCGACTCGGTCCCCCCTGCGTGCTGCCGATCCG
65 CGGCCGGAGAGGCAAAATGCGCAAG-TGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCG
* *
26052954 ACTGTCGCAACCCTCGGTCTGGTCTGAT
129 ACTGCCACAACCCTCGGTCTGGTCTGAT
26052982 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACT-GGAATGAACTCCGTATGC
26053009 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 67, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 82 0.31
158 101 0.38
159 81 0.30
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
GGCCGGAGAGGCAAAATGCGCAAGTGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCGAC
TGCCACAACCCTCGGTCTGGTCTGAT
Found at i:26053018 original size:26 final size:26
Alignment explanation
Indices: 26052982--26053034 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26052972 CTGGTCTGAT
26052982 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26053008 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26053034 C
1 C
26053035 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26053380 original size:26 final size:26
Alignment explanation
Indices: 26053351--26053406 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
26053341 CCGATTCGAT
*
26053351 CTTAGGCTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
26053377 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26053403 CTTA
1 CTTA
26053407 AGTTAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26055267 original size:26 final size:26
Alignment explanation
Indices: 26055238--26055287 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
26055228 CCGATCTGAT
*
26055238 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
26055264 CTTAGACTGGGGATAAACTCCGTA
1 CTTAGACTAGGAATAAACTCCGTA
26055288 AGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:26056690 original size:26 final size:26
Alignment explanation
Indices: 26056639--26056691 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26056629 CCGGTCTGAT
**
26056639 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
26056665 CTTAGATTAGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
26056691 C
1 C
26056692 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:26057049 original size:356 final size:348
Alignment explanation
Indices: 26056478--26057444 Score: 1001
Period size: 354 Copynumber: 2.7 Consensus size: 348
26056468 AGTTCGGTTG
** * * * *
26056478 GGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGACGCT
1 GGGCTTAGACATGGAATGTA-CTCTGTATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGCGCT
* * * * *
26056542 CAGTCGATCGAAGAGGCAGAATGCGCAAGCTAGGGATTGGCCCGGTCCCCCTTGCGTGCTACAGA
65 CAGTCGATCG-AGAGGCAGAATGCGCAAGCGA-GGATCGACCCGGTCCCTCTTGCGTGCTACCGA
* * * *
26056607 TCCTGCTACCGTAACCCTCAG-TCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGA
128 TCCTGCTGCTGCAACCCT-AGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
* * * * *
26056671 TTAGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATGCGAGCGTTCAGCTGATCG
192 CTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG--G-TC-
* *
26056736 GGGAGGCCAGTCGAAAAGGCATAATGTGCAAGTCGGGGATCAACCCAGTCCCCCTCTACGTGC-T
253 --GA--CC-G--G-AAAGGCATAATGTGAAAGACGGGGATCAACCCAGTCCCCCTCTACGTGCGT
*
26056800 -G-C-CG-GAC-CC-GCTGCCACAACCCTCAGTCCAACT-
310 CGACACGCGACGCCTGCTACCACAACCCTCAGTCC-ACTA
* * *
26056833 GGAGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAAACCACGAAACGAGTGTACGGGCGCT
1 GG-GCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGCGCT
* * * * *
26056898 CAGTCGATCAGACAGGCAGAATGAGCAAGCCGAGGATCGATCCGATCCCTCTTGCGTGCTGCCGA
65 CAGTCGATC-GAGAGGCAGAATGCGCAAG-CGAGGATCGACCCGGTCCCTCTTGCGTGCTACCGA
* * *
26056963 TCCTGCTGCTGCAACCCTAGATCTGGTCCGATCTTAGACTAGGAATGAACTCCGTTTGCTTAGAC
128 TCCTGCTGCTGCAACCCTAGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
* *
26057028 TGGGGATGAACTCCATATGCCTAAGTCCACCCATGAAACGAGCGTACGGGCGCTCA-GTCGACCG
193 TGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGGTCGACCG
* * ** * *
26057092 GAGAGGCATAATGTGAAAGAGGGGGATCAACCTGGTCCCCCTCTCCGTGCTGTCGATCACGCTGT
258 GAAAGGCATAATGTGAAAGACGGGGATCAACCCAGTCCCCCTCTACGTGC-GTCGA-CACGC-GA
**
26057157 CGGTCCTGCTACCACAACCCTTGGTCCACTA
320 C-G-CCTGCTACCACAACCCTCAGTCCACTA
** * * *
26057188 GGGCTTAGATGTGGAATGTACTTTGTATGCCTAAGCC-AACATATGAAACGAGCGTGCGGGAGCT
1 GGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAAAC-CATGAAACGAGCGTGCGGGCGCT
* * * *
26057252 CAGCCGGTCGGAGAGGCAGGATGCGCAAGTCGGGGATCGACCCGGTCCCT-TCTGCGTGCTACCG
65 CAGTCGATC-GAGAGGCAGAATGCGCAAG-CGAGGATCGACCCGGTCCCTCT-TGCGTGCTACCG
* * * * * * * *
26057316 ATCCTACTG-TCGCAACCCTCGATCCAGTTTGATCTTAGACTGGGAATGAATTTCATATGCTTAG
127 ATCCTGCTGCT-GCAACCCTAGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAG
*
26057380 ACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-GTCGAC
191 ACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGGTCGAC
26057444 C
256 C
26057445 AGAGAGACAG
Statistics
Matches: 514, Mismatches: 77, Indels: 43
0.81 0.12 0.07
Matches are distributed among these distances:
343 42 0.08
344 1 0.00
345 1 0.00
346 2 0.00
347 2 0.00
348 1 0.00
349 4 0.01
351 2 0.00
352 2 0.00
353 6 0.01
354 219 0.43
355 23 0.04
356 205 0.40
357 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (348 bp):
GGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGCGCTC
AGTCGATCGAGAGGCAGAATGCGCAAGCGAGGATCGACCCGGTCCCTCTTGCGTGCTACCGATCC
TGCTGCTGCAACCCTAGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGG
GGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGGTCGACCGGAA
AGGCATAATGTGAAAGACGGGGATCAACCCAGTCCCCCTCTACGTGCGTCGACACGCGACGCCTG
CTACCACAACCCTCAGTCCACTA
Found at i:26057333 original size:354 final size:341
Alignment explanation
Indices: 26056322--26057450 Score: 1007
Period size: 356 Copynumber: 3.2 Consensus size: 341
26056312 CCGGACCGAT
* * ** * * * * *
26056322 CTTAGACTAGGAATGAACTTTATATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCACTGAG-
1 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * * * * ** * *
26056386 CTGGCTGAAGAGGCATAATGCGTAAGCCAGGGATCAGCCC-GATCCCCCTCTATGTGCTATCAGT
66 C-GACCGGAGAGGCATAATGTGAAAGACGGGGATCAACCCAG-TCCCCCTCTACGTGCTGCCGGA
* * * * *** * **
26056450 CCCACTGCGACAACCCTCAGTTCGGTTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGC
129 CCCGCTACCACAACCCTCAGTCCAACTGGAGCTTAGACATGGAATGTA-CTCTGTATGCCTAAGC
* * * * *
26056514 CAACCCATGAAACGGGCATGC-GGACGCTCAGTCGATCGAAGAGGCAGAATGCGCAAGCTAGGGA
193 CAACACATGAAACGAGCGTGCGGGA-GCTCAGTCGATCGGAGAGGCAGAATGCGCAAGC-GGGGA
* * * * * *
26056578 TTGGCCCGGTCCCCCTTGCGTGCTACAGATCCTGCTACCGTAACCCTCAG-TCCGGTCTGATCTT
256 TCGACCCGGTCCCTCTTGCGTGCTACCGATCCTGCT-GCGCAACCCT-AGATCCGGTCTGATCTT
*
26056642 AGACTAGGAATGAACTCTGTATG
319 AGACTAGGAATGAACTCCGTATG
* * * * *
26056665 CTTAGATTAGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCATGCGAGCGTTCAGC
1 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCA--
* * *
26056730 TGATCGGGGAGGCCAGTCGAAAAGGCATAATGTGCAAGTCGGGGATCAACCCAGTCCCCCTCTAC
64 -G-TC---GA--CC-G--G-AGAGGCATAATGTGAAAGACGGGGATCAACCCAGTCCCCCTCTAC
*
26056795 GTGCTGCCGGACCCGCTGCCACAACCCTCAGTCCAACTGGAGCTTAGACATGGAATGTACTCTGT
118 GTGCTGCCGGACCCGCTACCACAACCCTCAGTCCAACTGGAGCTTAGACATGGAATGTACTCTGT
* * * * * * *
26056860 ATGCCTAAGCCAA-ACCACGAAACGAGTGTACGGGCGCTCAGTCGATCAGACAGGCAGAATGAGC
183 ATGCCTAAGCCAACA-CATGAAACGAGCGTGCGGGAGCTCAGTCGATCGGAGAGGCAGAATGCGC
* * * * *
26056924 AAGCCGAGGATCGATCCGATCCCTCTTGCGTGCTGCCGATCCTGCTGCTGCAACCCTAGATCTGG
247 AAG-CGGGGATCGACCCGGTCCCTCTTGCGTGCTACCGATCCTGCTGC-GCAACCCTAGATCCGG
* *
26056989 TCCGATCTTAGACTAGGAATGAACTCCGTTTG
310 TCTGATCTTAGACTAGGAATGAACTCCGTATG
* *
26057021 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCCACCCATGAAACGAGCGTACGGGCGCTCAGT
1 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* ** *
26057086 CGACCGGAGAGGCATAATGTGAAAGAGGGGGATCAACCTGGTCCCCCTCTCCGTGCTGTCGATCA
66 CGACCGGAGAGGCATAATGTGAAAGACGGGGATCAACCCAGTCCCCCTCTACGTGC--T-G--C-
* ** ** *
26057151 CGCTGTCGGTCCTGCTACCACAACCCTTGGTCC-ACTAGG-GCTTAGATGTGGAATGTACTTTGT
125 CG--GAC---CC-GCTACCACAACCCTCAGTCCAACT-GGAGCTTAGACATGGAATGTACTCTGT
* * * *
26057214 ATGCCTAAGCCAACATATGAAACGAGCGTGCGGGAGCTCAGCCGGTCGGAGAGGCAGGATGCGCA
183 ATGCCTAAGCCAACACATGAAACGAGCGTGCGGGAGCTCAGTCGATCGGAGAGGCAGAATGCGCA
* * *
26057279 AGTCGGGGATCGACCCGGTCCCT-TCTGCGTGCTACCGATCCTACTGTCGCAACCCTCGATCCAG
248 AG-CGGGGATCGACCCGGTCCCTCT-TGCGTGCTACCGATCCTGCTG-CGCAACCCTAGATCCGG
* * * * *
26057343 TTTGATCTTAGACTGGGAATGAATTTCATATG
310 TCTGATCTTAGACTAGGAATGAACTCCGTATG
*
26057375 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
*
26057440 CGACCAGAGAG
66 CGACCGGAGAG
26057451 ACAGGATGCG
Statistics
Matches: 636, Mismatches: 114, Indels: 61
0.78 0.14 0.08
Matches are distributed among these distances:
343 93 0.15
344 1 0.00
345 1 0.00
346 3 0.00
347 2 0.00
348 2 0.00
349 4 0.01
350 1 0.00
351 2 0.00
352 3 0.00
353 3 0.00
354 226 0.36
355 24 0.04
356 266 0.42
357 5 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (341 bp):
CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
CGACCGGAGAGGCATAATGTGAAAGACGGGGATCAACCCAGTCCCCCTCTACGTGCTGCCGGACC
CGCTACCACAACCCTCAGTCCAACTGGAGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAA
CACATGAAACGAGCGTGCGGGAGCTCAGTCGATCGGAGAGGCAGAATGCGCAAGCGGGGATCGAC
CCGGTCCCTCTTGCGTGCTACCGATCCTGCTGCGCAACCCTAGATCCGGTCTGATCTTAGACTAG
GAATGAACTCCGTATG
Found at i:26057385 original size:26 final size:26
Alignment explanation
Indices: 26057349--26057401 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26057339 CCAGTTTGAT
* *
26057349 CTTAGACTGGGAATGAATTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26057375 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
26057401 C
1 C
26057402 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26058250 original size:26 final size:26
Alignment explanation
Indices: 26058214--26058266 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26058204 CCAATTTGAT
26058214 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
26058240 CTTAGAGTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26058266 C
1 C
26058267 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26058597 original size:26 final size:26
Alignment explanation
Indices: 26058568--26058620 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26058558 CCAGTCCAAT
26058568 CTTAGACTG-GGAATGAACTCCATATG
1 CTTAGACTGAGG-ATGAACTCCATATG
*
26058594 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCATATG
26058620 C
1 C
26058621 CTAAGTCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCATATG
Found at i:26059266 original size:26 final size:26
Alignment explanation
Indices: 26059227--26059280 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
26059217 GGTCCGATAT
26059227 TAGACTGGGAATGAACTACGTATGCC
1 TAGACTGGGAATGAACTACGTATGCC
*
26059253 TAGACTGGGGATGAACTACGTATGCC
1 TAGACTGGGAATGAACTACGTATGCC
26059279 TA
1 TA
26059281 AGTCAACACA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTACGTATGCC
Found at i:26059826 original size:26 final size:26
Alignment explanation
Indices: 26059797--26059849 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26059787 TCAGTCAGAT
*
26059797 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26059823 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26059849 C
1 C
26059850 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26061289 original size:11 final size:11
Alignment explanation
Indices: 26061273--26061305 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
26061263 CAGTTAGGCT
*
26061273 CTCCGATGATG
1 CTCCGACGATG
26061284 CTCCGACGATG
1 CTCCGACGATG
26061295 CTCCGACGATG
1 CTCCGACGATG
26061306 GCACCCCGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:26061695 original size:159 final size:159
Alignment explanation
Indices: 26061401--26061884 Score: 482
Period size: 159 Copynumber: 3.1 Consensus size: 159
26061391 GCTCCACATG
* * * *
26061401 CTTAGAC-ATGGAATGAACT-CCATATGGC-TAAGCCAACCCTCGAAATGGGCGTTCGGGCGCTC
1 CTTAGACTATGGAATGAACTGCC-TAT-GCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * *
26061463 AGCCGGCCGGAGAGGTAGAATGCACAAGACAGG-GATCGACCCGGTCCCCCCCTGCGTGTTGTCG
64 AGCAGACCGAAGAGGAAGAATGCGCAAG-CCGGAGATCGACCCGGTCCCCCTCTGCGTGCTGTCG
*
26061527 ATCTTGCTGCCGCAACCCTCAGTCCGGTTCGAT
128 ATCTTGCTGCCGCAACCCTCGGTCCGG-TCGAT
* * * *
26061560 CTTAGACTA-GGAATGAACT-CCGTATGCATGAGTCAACCCATGAAACGAGCGTGCGGGCGCTGA
1 CTTAGACTATGGAATGAACTGCC-TATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
26061623 GCAGATCGAAGAGGCATAATGTGCAAGCCGGAGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGT
65 GCAGACCGAAGAGGAAGAATGCGCAAGCCGGAGATCGACCCGGTCCCCCTCTGCGTGCTGTCGAT
** * * * **
26061688 CCCGCTGCCACAACCCTCGGTCTGGCTGGGG
130 CTTGCTGCCGCAACCCTCGGTCCGG-TCGAT
* * * *
26061719 CTTAGAC-ATGGAATTAGCTGCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 CTTAGACTATGGAATGAACTGCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
26061783 CCGACCGGAGAGGAAGAATGCGCAAGCGGGGGATCGACCCGGTCCCTCCTC--CGTGCTGTCGAT
66 CAGACCGAAGAGGAAGAATGCGCAAGCCGGAGATCGACCCGGTCCC-CCTCTGCGTGCTGTCGAT
* *
26061846 CTTGCTGCCGAAACCCTCGGTCCGGGCGGAT
130 CTTGCTGCCGCAACCCTCGGTCCGGTC-GAT
26061877 CTTAGACT
1 CTTAGACT
26061885 GTTTTGTATG
Statistics
Matches: 261, Mismatches: 56, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
158 45 0.17
159 209 0.80
160 7 0.03
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (159 bp):
CTTAGACTATGGAATGAACTGCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CAGACCGAAGAGGAAGAATGCGCAAGCCGGAGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATC
TTGCTGCCGCAACCCTCGGTCCGGTCGAT
Found at i:26062273 original size:26 final size:26
Alignment explanation
Indices: 26062237--26062289 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26062227 CTGGTCTGAT
26062237 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
26062263 CTTAGACTGGGGATGTACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26062289 C
1 C
26062290 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26063299 original size:26 final size:26
Alignment explanation
Indices: 26063254--26063313 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
26063244 CCCCGGTCTG
*
26063254 ATCCG-AT-CTTAGAGTAGGAATGAA
1 ATCCGTATGCTTAGACTAGGAATGAA
* *
26063278 ATTCGTATGCTTAGACTGGGAATGAA
1 ATCCGTATGCTTAGACTAGGAATGAA
*
26063304 CTCCGTATGC
1 ATCCGTATGC
26063314 CTAAGTCAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
24 4 0.14
25 2 0.07
26 23 0.79
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTAGGAATGAA
Found at i:26068010 original size:26 final size:26
Alignment explanation
Indices: 26067974--26068026 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26067964 CTGGTCTGAT
26067974 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
26068000 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26068026 C
1 C
26068027 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26068525 original size:26 final size:26
Alignment explanation
Indices: 26068474--26068526 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26068464 CCGGTCCGAT
*
26068474 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26068500 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26068526 C
1 C
26068527 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26068866 original size:26 final size:26
Alignment explanation
Indices: 26068837--26068889 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26068827 TCGATTCGAT
26068837 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
26068863 CTTAGTCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26068889 C
1 C
26068890 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26068896 original size:27 final size:26
Alignment explanation
Indices: 26068843--26068896 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26068833 CGATCTTAGA
*
26068843 CTGGGAATGAACTCCATATGCTTAGT
1 CTGGGAATGAACTCCATATGCTAAGT
* *
26068869 CTGGGGATGAACTCCGTATGCCTAAGT
1 CTGGGAATGAACTCCATATG-CTAAGT
26068896 C
1 C
26068897 AACCCACGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (26 bp):
CTGGGAATGAACTCCATATGCTAAGT
Found at i:26069600 original size:26 final size:26
Alignment explanation
Indices: 26069571--26069623 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26069561 GGCTCAAAAT
*
26069571 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
26069597 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26069623 C
1 C
26069624 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26069925 original size:157 final size:158
Alignment explanation
Indices: 26069596--26070096 Score: 464
Period size: 158 Copynumber: 3.2 Consensus size: 158
26069586 AGCTCCGTAT
* *
26069596 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAATGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * **
26069661 CAGGTCAGAGAGGTAGAATGCTCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCC
66 CAGGTCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTACCGATCC
* *** **
26069726 TGCTGTTGCAACCCTCGGTCCGATCTGA
131 CGCTGCCACAACCCTCAATCCGATCTGA
* * * *
26069754 CCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCA-G-GCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * *
26069816 GCCGGTC-GAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCATGCTACCGA
65 GCAGGTCAG-AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCATGCTACCGA
*
26069880 TCCCGCTGCCACAACCCTCAATCCGA-CTGGG
128 TCCCGCTGCCACAACCCTCAATCCGATCT-GA
* * *
26069911 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCAC-AGAAC-AGGAGTGCGGGCGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA-AACGA-GCGTGCAGGCGCTC
* * * * * * * * * **
26069974 AGTC-GG-CTGGAGAGGCAAAATACGGAAGTCGGGGATCGGCTCGGTCCCCCCTACGTGCTGTCG
64 AG-CAGGTC-AGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTACCG
** ** * * *
26070037 ATCCTACTGCCACAACCCTCGGTCTGGTCCGA
127 ATCCCGCTGCCACAACCCTCAATCCGATCTGA
* *
26070069 TCTTAGA-TTGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
26070097 TTGGACTGGG
Statistics
Matches: 282, Mismatches: 47, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
155 1 0.00
156 50 0.18
157 80 0.28
158 106 0.38
159 43 0.15
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CAGGTCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTACCGATCC
CGCTGCCACAACCCTCAATCCGATCTGA
Found at i:26071398 original size:157 final size:158
Alignment explanation
Indices: 26071104--26071548 Score: 443
Period size: 157 Copynumber: 2.8 Consensus size: 158
26071094 CCGTATGCAT
* * * * * * *
26071104 GACATGGAATGAACTCCGTATGCCTAAGCCCACCTATGAAACGAGCGTACGGGCGC-GTAGTCGG
1 GACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTG-AGCCGG
* * * * * **
26071168 TCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGGGTGCTGTCGATCCTGCT
65 TCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCCACT
* * *
26071233 ACCGCAACCCTCAATTCGG-TCCGATCTTA
130 ACCACAACCCTCAATCCGGCT-CGAGCTTA
* * *
26071262 GAC-TGGGAATGAACACCGTCT-CCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCG
1 GACAT-GGAATGAACACCCTATGCC-TAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCG
* * * *
26071325 GT-TGAAGAGGCA-AATGAGCAAGCCGGGGATCGGCCCGATCCCCTCTGCGTGCTACCGATCCCA
64 GTCAG-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCCA
* ** * *
26071388 CTGCCACAACCCTCGGTCCGGCTGGGGCTTA
128 CTACCACAACCCTCAATCCGGCTCGAGCTTA
* * * * * * * *
26071419 GACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGAGCGCGCGGGCGTTCAGCCTGC
1 GACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGT
* * *
26071484 CAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGTGTGCTATCGATCCTACTA
66 CAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCCACTA
26071549 TCGCAACTCT
Statistics
Matches: 232, Mismatches: 46, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
157 122 0.53
158 109 0.47
159 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.29, T:0.17
Consensus pattern (158 bp):
GACATGGAATGAACACCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGT
CAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCCACTA
CCACAACCCTCAATCCGGCTCGAGCTTA
Found at i:26071577 original size:158 final size:155
Alignment explanation
Indices: 26071109--26071599 Score: 468
Period size: 158 Copynumber: 3.1 Consensus size: 155
26071099 TGCATGACAT
* * * * * *
26071109 GGAATGAACTCCGTATGCCTAAGCCCACCTATGAAACGAGCGTACGGGCGCGTAGTCGGTCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC-TAG-CCGCCAGAG
* * * * * *
26071174 AGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGGGTGCTGTCGATCCTGCTACCGCA
64 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTACTACCGCA
** * *
26071239 ACCCTCAATTCGGTCCGATCTTAGACTG
129 ACCCTCGGTTC-CTTCGATCTTAGACTG
* * * ***
26071267 GGAATGAACACCGTCT-CCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGTTGAA
1 GGAATGAACTCCGTATGCC-TAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-AGCCGCCAG-A
* * * * * *
26071331 GAGGCA-AATGAGCAAGCCGGGGATCGGCCCGATCCCCTCTGCGTGCTACCGATCCCACTGCCAC
63 GAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTACTACCGC
* * **
26071395 AACCCTCGG-TCCGGCTGGGGCTTAGACAT-
128 AACCCTCGGTTCC--TTCGATCTTAGAC-TG
* * * * *
26071424 GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGAGCGCGCGGGCGTTCAGCCTGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-AGCC-GCCAGAG
* * *
26071489 AGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCCTGTGTGCTATCGATCCTACTATCGCA
64 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTACTACCGCA
* *
26071554 ACTCTCGGTTCCTATCAATCTTAGACTG
129 ACCCTCGGTTCCT-TCGATCTTAGACTG
26071582 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
26071600 TTAGACTGGG
Statistics
Matches: 261, Mismatches: 60, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
156 2 0.01
157 120 0.46
158 136 0.52
159 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (155 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAGCCGCCAGAGAG
GCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTACTACCGCAAC
CCTCGGTTCCTTCGATCTTAGACTG
Found at i:26071609 original size:26 final size:26
Alignment explanation
Indices: 26071573--26071625 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26071563 TCCTATCAAT
26071573 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26071599 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26071625 C
1 C
26071626 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26073297 original size:135 final size:135
Alignment explanation
Indices: 26073055--26073326 Score: 429
Period size: 135 Copynumber: 2.0 Consensus size: 135
26073045 GAAACGGATG
* *
26073055 TACGGATGCTCAGCCGACCGGAGAGGTAGAATGGGCAAGCCGGGGATCAGCCCGGTCCCCCTTGC
1 TACGGATGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTAC
* * * * ** *
26073120 GTGCTGTTGATCTTGCTCTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGT
66 GTGCTGTCGATCCTGCTCTCACAACCCTCAGTCCCGTCTGATCTTAGACTGGGAATGAACTCCGT
26073185 ATGCT
131 ATGCT
*
26073190 TACGGATGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCTCCCC-TA
1 TACGGATGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGGTC-CCCCTTA
*
26073254 CGTGCTGTCGATCCTGCTGTCACAACCCTCAGTCCCGTCTGATCTTAGACTGGGAATGAACTCCG
65 CGTGCTGTCGATCCTGCTCTCACAACCCTCAGTCCCGTCTGATCTTAGACTGGGAATGAACTCCG
26073319 TATGCT
130 TATGCT
26073325 TA
1 TA
26073327 GACTGGGGAT
Statistics
Matches: 125, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
135 121 0.97
136 4 0.03
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (135 bp):
TACGGATGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTAC
GTGCTGTCGATCCTGCTCTCACAACCCTCAGTCCCGTCTGATCTTAGACTGGGAATGAACTCCGT
ATGCT
Found at i:26073326 original size:26 final size:26
Alignment explanation
Indices: 26073297--26073347 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26073287 CCCGTCTGAT
26073297 CTTAGACTGGGAATGAA-CTCCGTATG
1 CTTAGACTGGGAAT-AAGCTCCGTATG
*
26073323 CTTAGACTGGGGATAAGCTCCGTAT
1 CTTAGACTGGGAATAAGCTCCGTAT
26073348 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAGCTCCGTATG
Found at i:26074060 original size:368 final size:362
Alignment explanation
Indices: 26073198--26074358 Score: 1105
Period size: 368 Copynumber: 3.2 Consensus size: 362
26073188 CTTACGGATG
* * **
26073198 CTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCTCCCCTACGTGCTGTC
1 CTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACC
** * *
26073263 GATCCTGCTGTCACAACCCT-CAGTCCCGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
66 GATCCTGCTGTCGTAACCCTGGA-T-CCGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTA
* ** * * * *
26073327 GACTGGGGAT-AAGCTCCGTATACCTAAGTCAAAACACGAAACGAGCGTGCGGGGGCTC-AGTCG
128 GACTGGGGATGAA-CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACTAG
* ** * * * * *
26073390 ACCAGAGTGGTAGGTCGGAGAGGCATAATGTGCAATCGGGGTCAGCCCGATCCCCCTCTGCGTGC
192 -CCAGAGAGGCCGATCGGAGAGGCATAATGCGCAAGCGGGATCAGCCCGATCCACCTCTGCGTGC
** * * * * *
26073455 TGCTGATCCCGCTACCAGTTCAGCTGCCACAACCTTCGGTCTAGCTGGGGCTTAGACGTGGAATG
256 TGCCAATCCCGCTACCAGTCCAGCTACCACAACCCTCGATCCAGCTGGGGCTTAGACGTGGAATG
* *
26073520 TACTCGTATGCCTAAGCCAACCCTCAAAATGAGCGTGCCGGCG
321 TACTCGTATGCCTAAGCAAACCCTCAAAA-GAGCGTGCCGGCA
** * ** *
26073563 CTCAGTTGACCGGAGAGGCAGAATGTGCAAGCCAAGGATCGGCCTGGT-CCCCCTACGTGCTACC
1 CTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACC
* ** *
26073627 GATCCTGCTGTCGTAACCCTCGGTTTGGTCCGATCTTAGGCTAGGAATGAACTCCGTATGCTTAG
66 GATCCTGCTGTCGTAACCCT-GGATCCGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAG
* * * *
26073692 ACTGGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCTTACGGGTGCTCAACTAGCC
129 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACTAGCC
* * * ** *
26073757 GGAGAGGCCGATCGGAGAGGCATAATGCACAAGCTGAGTATCAGTTCGATCCACCTCTGTGTGCT
194 AGAGAGGCCGATCGGAGAGGCATAATGCGCAAGC-G-GGATCAGCCCGATCCACCTCTGCGTGCT
* ** * *
26073822 GCCAATCTCGCTGTCAGTCCTGCTACCACAACCCTCGATCCAGTTGGGGCTTAGACGTGGAATGT
257 GCCAATCCCGCTACCAGTCCAGCTACCACAACCCTCGATCCAGCTGGGGCTTAGACGTGGAATGT
* ** *
26073887 ACTCTGTATGCCTAAGCAAACCCATGAAACA-AGCGTGTGGGTA
322 ACTC-GTATGCCTAAGCAAACCC-TCAAA-AGAGCGTGCCGGCA
** * * * **
26073930 CTCAGCCGGTCGGAGAGGCAGAATACGCAAGTCGGGGATCGGCCCAGTCCCCCCTGGGTGCTACC
1 CTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACC
* *
26073995 GATCCTGCTGCCGTAACCCTGGATCCGATCCGATCTTAGACTGGAAATGAACTTCGTATGCTTAG
66 GATCCTGCTGTCGTAACCCTGGATCCG-TCCGATCTTAGACTGG-AATGAACTCCGTATGCTTAG
** * * * * **
26074060 AAGGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGATCGTACGAGCGCTCAGCCGGCC
129 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACTAGCC
* ** * * *
26074125 AGAGAGGCC-AGCCGGAGAGGCATAATGCGCAAGCCAGGGATCAGCCC-AGTCTTCTTTTTCGTG
194 AGAGAGGCCGA-TCGGAGAGGCATAATGCGCAAG-C-GGGATCAGCCCGA-TCCACCTCTGCGTG
* * * ** * * * *
26074188 CTGCCAATCCCACTGCCGGTCTTGTTGCCACAACCCTTGGTCC-GACTGGGGCTTAGACGTGGAA
255 CTGCCAATCCCGCTACCAGTCCAGCTACCACAACCCTCGATCCAG-CTGGGGCTTAGACGTGGAA
* * * * * *
26074252 TGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCG
319 TGTACT-CGTATGCCTAAGCAAACCCTC-AAAAGAGCGTGCCGGCA
* * * ** * *
26074298 CTTAGCCGACCGGAGAGGTAGAATGCCCAAGAGGGGGATCGGCCCGATCCCCTTCTACGTG
1 CTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCC-CCTACGTG
26074359 TTGCCGGTCC
Statistics
Matches: 640, Mismatches: 136, Indels: 36
0.79 0.17 0.04
Matches are distributed among these distances:
364 140 0.22
365 48 0.08
366 79 0.12
367 71 0.11
368 293 0.46
369 9 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (362 bp):
CTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACC
GATCCTGCTGTCGTAACCCTGGATCCGTCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGAC
TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACTAGCCAG
AGAGGCCGATCGGAGAGGCATAATGCGCAAGCGGGATCAGCCCGATCCACCTCTGCGTGCTGCCA
ATCCCGCTACCAGTCCAGCTACCACAACCCTCGATCCAGCTGGGGCTTAGACGTGGAATGTACTC
GTATGCCTAAGCAAACCCTCAAAAGAGCGTGCCGGCA
Found at i:26074494 original size:159 final size:159
Alignment explanation
Indices: 26074213--26074508 Score: 432
Period size: 159 Copynumber: 1.9 Consensus size: 159
26074203 CCGGTCTTGT
* *
26074213 TGCCACAACCCTTGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCC
1 TGCCACAACCCTTGGTCCGACTGGGGCTTACACATGGAATGTACTCCGTATGCCTAAGCCAACCC
* * * * *
26074278 ACGAAACGAGTGTGCGGGCGCTTAGCCGACCGGAGAGGTAGAATGCCCAAGAGGGGGATCGGCCC
66 ACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCCCAAGACGGGGATCGGCCC
26074343 GATCCCCTTCTACGTGTTGCCGGTCCCGC
131 GATCCCCTTCTACGTGTTGCCGGTCCCGC
* * *
26074372 TGCCACAACCCTTGGTTCGGCTGGGGCTTACACATGGAATG-AGCTCCTTATGCCTAAGCCAACC
1 TGCCACAACCCTTGGTCCGACTGGGGCTTACACATGGAATGTA-CTCCGTATGCCTAAGCCAACC
* * ** * *
26074436 CACGAAATGGGCGTACGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
65 CACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCCCAAGACGGGGATCGGCC
26074501 CGATCCCC
130 CGATCCCC
26074509 CTTGCATGCT
Statistics
Matches: 120, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
158 1 0.01
159 119 0.99
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (159 bp):
TGCCACAACCCTTGGTCCGACTGGGGCTTACACATGGAATGTACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCCCAAGACGGGGATCGGCCC
GATCCCCTTCTACGTGTTGCCGGTCCCGC
Found at i:26074585 original size:26 final size:26
Alignment explanation
Indices: 26074556--26074608 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26074546 CTGATCCGAT
26074556 CTTAGACTAGGA-ATGAACTCCGTATG
1 CTTAGACT-GGAGATGAACTCCGTATG
*
26074582 CTTAGACTGGAGATGAACTCTGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
26074608 C
1 C
26074609 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:26075285 original size:26 final size:26
Alignment explanation
Indices: 26075249--26075301 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26075239 CCTGTCCAAT
*
26075249 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26075275 CTTAGAGTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
26075301 C
1 C
26075302 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26076771 original size:332 final size:343
Alignment explanation
Indices: 26076330--26077256 Score: 936
Period size: 332 Copynumber: 2.7 Consensus size: 343
26076320 ATGTAATGAG
* * * * * * *
26076330 CTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCACTCAATCGGTCGGAGAGGCAGAA
1 CTCCATATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAA
* * *
26076395 TGCGTAAGCCGAGAATCGACCCGATCCCCCCTACGTGCTACCGATCCTGCTACCGCAACCCTCGA
66 TGCGTAAGCCGAGGATCGACCCGATCCCCCATGCGTGCTACCGATCCTGCTACCGCAACCCTCGA
* * * *
26076460 TCTGATCTGATCTTAGATTGGGAATAAACTCCATATGCTTAGACTGGGGATGCACTTC-GTATGC
131 TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG-ACTTCTGTATGC
* *
26076524 CTAAGTCAACCCACGAAATGAGCCTAC-GAGCGCTCA-G-CC-A-G-CCGGAGAGGCATAATGTG
195 CTAAGTCAACCCACGAAATGAGCATACGGA-CGCTCACGACCAAGGACCGGAGAGGCATAATGCG
* * *
26076583 CAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGAT-CTCGCTGTTGGTCCTGCTGCCA
259 CAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCCT-ACTGTCGGTCCTGCTGCCA
26076647 CAA-CC-C-A-T-A-AATGTA
323 CAACCCTCGAGTAAGAATGTA
*
26076662 CTCCATATACCTAAGCCAAACCATGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAA
1 CTCCATATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAA
* * * * * * *
26076727 TGTGCAAGTC-AGGGATCGACCCGATCCCCCTTGCGTGCTACCGATCCTGCTACCGTAACGCTCA
66 TGCGTAAGCCGA-GGATCGACCCGATCCCCCATGCGTGCTACCGATCCTGCTACCGCAACCCTCG
* * * * *
26076791 ATCCGATCCAATTCGATCTTAGACTAGTAATGAACTCCGTATGCTTAAACTAGGGATGAATTCTG
130 ATCCGAT-C---T-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGACTTCTG
26076856 TATGCCTAAGTCAACCCACGAAATGAGCATACGGACGCTCAGTCGACCAGAGAGGCTACCGGAGA
190 TATGCCTAAGTCAACCCACGAAATGAGCATACGGACGCTCA--CGACC--A-AGG--ACCGGAGA
* * *
26076921 GGCATAATGCGTAAGCCAGGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCGATCCTACTGTCGGT
248 GGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCCTACTGTCGGT
*
26076986 CCTGCTGTCACAACCCTCGATCTGGTTGGGGCTTAGACATGGAATGTA
313 CCTGCTGCCACAACCCTCGA----------G--T--A-A--GAATGTA
* * * * * *
26077034 CTTCGTATGCCTAAGCC-AACACACGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGTAGA
1 CTCCATATGCCTAAGCCAAAC-CATGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGA
* * * * *
26077098 ATACGTAAGCCGAGGATC-AGTCTGAACCCCCATGCGTGCTACCGATCCTACTACCGCAACCCTC
65 ATGCGTAAGCCGAGGATCGA-CCCGATCCCCCATGCGTGCTACCGATCCTGCTACCGCAACCCTC
* * *
26077162 GATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGCATGAAC-TCTGTAT
129 GATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG-ACTTCTGTAT
* *
26077226 GCCTAAGTCAACCCACGAAACGAGCGTACGG
193 GCCTAAGTCAACCCACGAAATGAGCATACGG
26077257 GTGCTCAACC
Statistics
Matches: 483, Mismatches: 64, Indels: 61
0.79 0.11 0.10
Matches are distributed among these distances:
331 1 0.00
332 116 0.24
333 1 0.00
336 5 0.01
337 75 0.16
338 2 0.00
340 1 0.00
341 2 0.00
345 1 0.00
346 1 0.00
349 74 0.15
350 4 0.01
351 1 0.00
352 1 0.00
365 1 0.00
367 74 0.15
368 2 0.00
369 1 0.00
371 5 0.01
372 114 0.24
373 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (343 bp):
CTCCATATGCCTAAGCCAAACCATGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAA
TGCGTAAGCCGAGGATCGACCCGATCCCCCATGCGTGCTACCGATCCTGCTACCGCAACCCTCGA
TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGACTTCTGTATGCC
TAAGTCAACCCACGAAATGAGCATACGGACGCTCACGACCAAGGACCGGAGAGGCATAATGCGCA
AGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCCTACTGTCGGTCCTGCTGCCACAA
CCCTCGAGTAAGAATGTA
Found at i:26077211 original size:26 final size:26
Alignment explanation
Indices: 26077175--26077227 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26077165 CCGGTCTGAT
26077175 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
26077201 CTTAGACTGGGCATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
26077227 C
1 C
26077228 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:26078417 original size:26 final size:26
Alignment explanation
Indices: 26078388--26078438 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26078378 CGGTTTGATC
26078388 TTAGACTAGGAATGAACTTCGTATGG
1 TTAGACTAGGAATGAACTTCGTATGG
* *
26078414 TTAGACTGGGGATGAACTTCGTATG
1 TTAGACTAGGAATGAACTTCGTATG
26078439 CCTAAGTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTTCGTATGG
Found at i:26078792 original size:26 final size:26
Alignment explanation
Indices: 26078756--26078808 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26078746 CTGATCTGAT
26078756 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26078782 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26078808 C
1 C
26078809 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26078949 original size:369 final size:369
Alignment explanation
Indices: 26078206--26079226 Score: 1070
Period size: 369 Copynumber: 2.8 Consensus size: 369
26078196 GATCCTATTG
* * * * * * *
26078206 CCACAACCC-CGGTTCGGCTGGGGCTTAGACATGGAATG-AGCTCCCTATACCTAAGCCAACTCA
1 CCACAACCCTCGGTCCGACTAGGGCTTAGACGTGGAATGTA-CTCCATATGCCTAAGCCAACCCA
* * * * * *
26078269 CGAAACGGGCGTACGGACGCTCAGCCGGTCAGAGAGGCAGAATGTGCAAGCCAGGGATCGACCTG
65 TGAAACGAGCGTACGGACGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCG
* * * * * * * * *
26078334 GTCCCTCCTCA-GTGCTGCCGATCCTACTGCCGTATCCCTCGGT-TCGGTTTGATCTTAGACTAG
130 ATCCCCCCT-ATGTGCTGTCGATCCTACTACCGCAACCCTCGATCT-GATCTGATCTTAGACTAG
* * * *
26078397 GAATGAACTTCGTATGGTTAGACTGGGGATGAACTTCGTATGCCTAAGTGAACCCATGAAACGAG
193 GAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAACTCAACCCATGAAACGAG
** * * * * ** *
26078462 CGTGCGGGTGCCTCAGCCGGCCGGAGAGGCCGACCGGGGAGTCATAATGCGCAAGCTGGGGATCC
258 CGTGCGGCCGCCTCAGCCGACCGGAGAGGCCGACCGGAGAGGCATAATGCACAAGCCAGGGATCA
* * ** * * * *
26078527 GCCTGATCCCGTTCTACATGCTGCCGATCTCGCTACCGGTCTTGCTA
323 ACCCGATCCCCCTCTACATGCTACCGATCCCACTACCGGTCCTGCTA
* * *
26078574 CCACAACCCTCGGTCCGATTAGGGCTTAGACGTGGAATGTACTCCATATGCCAAACCCAACCCAT
1 CCACAACCCTCGGTCCGACTAGGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACCCAT
* * * * *
26078639 GAAACGAGCTTGCGGGCGCTCAACCAGCCAGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGA
66 GAAACGAGCGTACGGACGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGA
* * * * *
26078704 TCCCCCCTGTGTGTTGTCGATCCTATTACCGCAACCCTTGATCTGATCTGATCTTAGACTGGGAA
131 TCCCCCCTATGTGCTGTCGATCCTACTACCGCAACCCTCGATCTGATCTGATCTTAGACTAGGAA
* * * *
26078769 TGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAACTCAA-CCATTGGAATGAGCG
196 TGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAACTCAACCCA-TGAAACGAGCG
* * * *
26078833 TGCGGCCG-CTTAGCCGATCGGAGAGGCCGACCGGAGAGGCATATTGCATAAGCCAGGGATCAAC
260 TGCGGCCGCCTCAGCCGACCGGAGAGGCCGACCGGAGAGGCATAATGCACAAGCCAGGGATCAAC
* ** * * *
26078897 CCGATCCCCCTCTACGTGCTATTGGTCCCACTGCCGGTCCTGCTGC
325 CCGATCCCCCTCTACATGCTACCGATCCCACTACCGGTCCTGCT-A
* * * * *
26078943 CCACAACCCTTGGTCTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGACTAGGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACCCAT
* * * *
26079008 GAAATGAACGTACGGACGCTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA
66 GAAACGAGCGTACGGACGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGA
* ** * *
26079073 TCCCCCTTATGTGCTGTCGATCCTACTACCGCAACCCTCGATCTGATCCAATCTTAGGCTAGAAA
131 TCCCCCCTATGTGCTGTCGATCCTACTACCGCAACCCTCGATCTGATCTGATCTTAGACTAGGAA
** * * * *
26079138 TGAACTTCGTATGCTTAGA-TCAAGAATGAACTCTGTATGCCTAAGC-CAACCCACGAAATGAGC
196 TGAACTTCGTATGCTTAGACT-GGGGATGAACTCCGTATGCCTAA-CTCAACCCATGAAACGAGC
* * * *
26079201 GTACGGGCG-CTCAACCGACCAGAGAG
259 GTGCGGCCGCCTCAGCCGACCGGAGAG
26079227 ACAGGATGCG
Statistics
Matches: 533, Mismatches: 111, Indels: 17
0.81 0.17 0.03
Matches are distributed among these distances:
368 89 0.17
369 438 0.82
370 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (369 bp):
CCACAACCCTCGGTCCGACTAGGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACCCAT
GAAACGAGCGTACGGACGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGA
TCCCCCCTATGTGCTGTCGATCCTACTACCGCAACCCTCGATCTGATCTGATCTTAGACTAGGAA
TGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGCGT
GCGGCCGCCTCAGCCGACCGGAGAGGCCGACCGGAGAGGCATAATGCACAAGCCAGGGATCAACC
CGATCCCCCTCTACATGCTACCGATCCCACTACCGGTCCTGCTA
Found at i:26080331 original size:158 final size:158
Alignment explanation
Indices: 26079872--26080365 Score: 462
Period size: 158 Copynumber: 3.1 Consensus size: 158
26079862 AGCTCCGTAT
* * *
26079872 GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
26079937 CCGACCGGAGTGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGTTGTCGAGCC
66 CCGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
26080002 TGTTGCCACAACCCTCGGTCCGATCTGA
131 TGCTGCCACAACCCTCGGTCTGATCTGA
* * ** * ** * *
26080030 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTTAACCCATGAAACGAGCGTGCAAGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** * * *
26080094 GCCGATCGAAGAGGCATAATGCGAAACCCGGGGATC-GCCCGATCCCCCTCTGTGTGCTGTCGGT
65 GCCGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGAT
*
26080158 CC--CATAGCCACAACCCTCGGTCTGA-CTGGG
129 CCTGC-T-GCCACAACCCTCGGTCTGATCT-GA
* * * * * *
26080188 GCTTAGACATAGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
26080253 TCGGTCGAAGAGGCAGAATGCGCAAGTTGGGGATCGGCTCGGTCCCCCCTACGTGCTGCCGATCC
66 CCGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * **
26080318 TGCT-CCAGTAACCCTCGATCTGGTCCAA
131 TGCTGCCA-CAACCCTCGGTCTGATCTGA
*
26080346 TCTTAGAC-TGGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
26080366 TCGTATGCTT
Statistics
Matches: 259, Mismatches: 65, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
157 18 0.07
158 227 0.88
159 13 0.05
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCTGATCTGA
Found at i:26080391 original size:26 final size:26
Alignment explanation
Indices: 26080347--26080399 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26080337 CTGGTCCAAT
*
26080347 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATAAACTCT-GTATG
* *
26080373 CTTAGGCTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTGTATG
26080399 C
1 C
26080400 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTGTATG
Found at i:26080742 original size:26 final size:26
Alignment explanation
Indices: 26080702--26080752 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26080692 TAGTTTGATC
*
26080702 TTAGACTAGGAATGAATTCCGTATGG
1 TTAGACTAGGAATGAACTCCGTATGG
* *
26080728 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
26080753 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGG
Found at i:26080928 original size:367 final size:352
Alignment explanation
Indices: 26080164--26081192 Score: 1197
Period size: 367 Copynumber: 2.9 Consensus size: 352
26080154 CGGTCCCATA
* * *
26080164 GCCACAACCCTCGGTCTGACTGGGGCTTAGACATAGAATG-AGCTCCCTATGCCTAAGCCAACCC
1 GCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCC
* * * **
26080228 ACGAAACG-GGTGTACGGGCGCTCAGTCGGTCGAAGAGGCAGAATGCGCAAGTTGGGGATCGGCT
65 ACGAAACGAGG-GTGCGGGCGCTCAG-CCGACGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCT
* * * * * *
26080292 CGGTCCCCCCTACGTGCTGCCGATCCTGCT-CCAGTAACCCTCGATCTGGTCCAATCTTAGACTG
128 -GGT-CCCCCTGCGTGCTGTCGATCCTGCTATC-GTAATCCTCGATCTGGTTCGATCTTAGACTG
* * *
26080356 GGAATGAACTT-CGTATGCTTAGGCTGGGGATAAACTCTGTATGCCTAAGTCAACCCACGAAATG
190 GGAATGAA-TTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATG
* * * *
26080420 AGCGTGCGGGCGCTCAGCCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCAGCTCGGTCCCCC
254 AGCGTGCAGGCACTCAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCC
* *
26080485 TCTGCATGCTGCCGATCCCGCTGTCGGTCCTGCT
319 TCTACATGCTGCCGATCCCGCTGTCAGTCCTGCT
* * *
26080519 GCCACAACCCTTGGTCCGACTGGGGCTTAGACGTGGAATGTACTTCGTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCA
* * * *
26080584 TGAAATGAGGGTGCGGGCGCACAGCCGACCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTG
66 CGAAACGAGGGTGCGGGCGCTCAGCCGA-CGAAGAGGCAGAATGCGCAAGCCGGGGATCGG-CTG
* * * *
26080649 GTCCCCCTGTGTGCTGTCGATCCTGCTATCGTAATCCTCGATCTAGTTTGATCTTAGACTAGGAA
129 GTCCCCCTGCGTGCTGTCGATCCTGCTATCGTAATCCTCGATCTGGTTCGATCTTAGACTGGGAA
* *
26080714 TGAATTCCGTATGGTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGAGT
194 TGAATTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT
*
26080779 GCAGGCACTCAGTCGACCGGAGTGGCCAGTCGGAGAGGCATAATGCGCAAGCCGGGGATTAGCCC
259 GCAGGCACTCA---G-CC-GA-----C---CGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCC
** * *
26080844 GGTCCCCCTCTATGTGCTGTCGATCTCGCTGTCAGTCCTGCT
311 GGTCCCCCTCTACATGCTGCCGATCCCGCTGTCAGTCCTGCT
**
26080886 GCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCA
* * ** * * *
26080951 CGAAACGAGCGTGCAGATGCTCAGTCGGAGGGAGAGGCAGAATGCGCAAGCCGGGGATCGGAAC-
66 CGAAACGAGGGTGCGGGCGCTCAG-CCGACGAAGAGGCAGAATGCGCAAGCCGGGGATCGG--CT
* * *
26081015 GGTCCCCCTTGCGTGCTGTCGATCCTGCTATCG-CATCCCTTGATCCGGTTCGATCTTAGACTGG
128 GGTCCCCC-TGCGTGCTGTCGATCCTGCTATCGTAAT-CCTCGATCTGGTTCGATCTTAGACTGG
* * * *
26081079 GAATGAACTCTGTATGCTTAGAATGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAG
191 GAATGAATTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
* ** * * * *
26081144 CGTGCGGGCGTTCAGCCGACCAGAGAGGCATATTACGTAAGCCGGGGAT
256 CGTGCAGGCACTCAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGAT
26081193 TGGGTCGGTC
Statistics
Matches: 573, Mismatches: 78, Indels: 46
0.82 0.11 0.07
Matches are distributed among these distances:
353 2 0.00
354 119 0.21
355 132 0.23
356 5 0.01
357 1 0.00
358 3 0.01
359 2 0.00
363 2 0.00
364 3 0.01
365 1 0.00
367 184 0.32
368 119 0.21
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (352 bp):
GCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCA
CGAAACGAGGGTGCGGGCGCTCAGCCGACGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTGGT
CCCCCTGCGTGCTGTCGATCCTGCTATCGTAATCCTCGATCTGGTTCGATCTTAGACTGGGAATG
AATTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
AGGCACTCAGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTACAT
GCTGCCGATCCCGCTGTCAGTCCTGCT
Found at i:26081105 original size:26 final size:26
Alignment explanation
Indices: 26081069--26081121 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26081059 CCGGTTCGAT
* *
26081069 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
26081095 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
26081121 C
1 C
26081122 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:26081248 original size:112 final size:112
Alignment explanation
Indices: 26081107--26081315 Score: 303
Period size: 112 Copynumber: 1.9 Consensus size: 112
26081097 TAGAATGGGG
* * * *
26081107 ATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGCGTTCAGCCGACC-AGAGAG
1 ATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGA-AGAG
* * *
26081171 GCATATTACGTAAGCCGGGGATTGGGTCGGTCCGATCTTAGACAAGGA
65 GCATAATACGCAAGCCGGGGATCGGGTCGGTCCGATCTTAGACAAGGA
* *
26081219 ATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCTGGCGCTGAGCCGACCGAAGAGG
1 ATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGG
* *
26081284 CATAATGCGCAAGCCGGGGATCGGGTTGGTCC
66 CATAATACGCAAGCCGGGGATCGGGTCGGTCC
26081316 CCCTCTGCGT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
112 84 0.99
113 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.31, T:0.17
Consensus pattern (112 bp):
ATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGG
CATAATACGCAAGCCGGGGATCGGGTCGGTCCGATCTTAGACAAGGA
Found at i:26081907 original size:810 final size:819
Alignment explanation
Indices: 26080395--26081983 Score: 1896
Period size: 810 Copynumber: 1.9 Consensus size: 819
26080385 ATAAACTCTG
* * *
26080395 TATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCATAATGCGC
1 TATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCATAATGCGC
* * **
26080460 AAGCTGGGGATCAGCTCGGTCCCCCTCTGCATGCTGCCGATCCCGCTGTCGGTCCTGCTGCCACA
66 AAGCCGGGGATCAGCTCGGTCCCCCTCTGCA-GCT--CGAT----CTGTCGATCCCACTGCCACA
* * * * *
26080525 ACCCTTGGTCCGACTGGGGCTTAGACGTGGAATGTACTTCGTATGCCTAAGCCAACCCATGAAAT
124 ACCCTGGGTCCGACTGGGGCTTAGACATGGAATGTACTCCCTATGCCTAAGCCAAACCATGAAAT
* * * * * *
26080590 GAGGGTGCGGGCGCACAGCCGACCGAAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCC
189 CAGGGTACGGGCGCACAGCCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGGTCCCC
** * * * ** *
26080655 CTGTGTGCTGTCGATCCTGCTATCGTAATCCTCGATCTAGTTTGATCTTAGACTAGGAATGAATT
254 CTCCGTGCTGCCGATCCTGCTACCGTAACCCTCGATCTAGTCCGATCTTACACTAGGAATGAATT
* *
26080720 CCGTATGGTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGAGTGCAGGC
319 CCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCAGGC
* *
26080785 ACTCAGTCGACCGGAGTGGCCAGTCGGAGAGGCATAATGCGCAAGCCGGGGATTAGCCCGGTCCC
384 ACTCA--CGACC---G-GGCCA--CGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAGTCCC
** ** * * * *
26080850 CCTCTATGTGCTGTCGATCTCGCTGTCAGTCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTA
441 CCTCTACATGCTACCGATCCCGCTGCCAGTCCTGCTACCACAACCCTCAGTCCGGTTGGGGCTTA
* * * **
26080915 GACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGATGCTCAGTCGGA
506 GACATGGAATGTACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGACGCTCAGGCCAA
** * ** * * * *
26080980 GGGAGAGGCAGAATGCGCAAGCCGGGGATCGGAACGGTCCCCCTTGCGTGCTGTCGATCCTGCTA
571 CAGAGAGGCAGAATACGCAAGCCAAGGATCAGAACGGTCCCCCTTACGTGCTGCCGATCCTCCTA
* * * * * * *
26081045 TCGCATCCCTTGATCCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAATGGGGATG
636 CCGCAACCCTCGATCCGGTTCGATCTTAGACTAGGAATGAACTCTATATGCTTAGAATCGAGATG
* * * *
26081110 AACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGCGTTCAGCCGACCAGAGAGGCAT
701 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAAAGAGGCAT
26081175 ATTACGTAAGCCGGGGATTGGGTCGGTCCGATCTTAGACAAGGAATGAACTCCA
766 ATTACGTAAGCCGGGGATTGGGTCGGTCCGATCTTAGACAAGGAATGAACTCCA
* *
26081229 TATGCATAAGTCAACCCACGAAACGAGCGTGCTGGCGCTGAGCCGACCGAAGAGGCATAATGCGC
1 TATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCATAATGCGC
* * *
26081294 AAGCCGGGGATCGGGTTGGTCCCCCTCTGC-G-T-G-T-TGTCGATCCCACTGCCACAACCCTGG
66 AAGCCGGGGATCAGCTCGGTCCCCCTCTGCAGCTCGATCTGTCGATCCCACTGCCACAACCCTGG
26081354 GTCCGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAAACCATGAAA-CAGGCG
131 GTCCGACTGGGGCTTAGACATGGAATGTA-CTCCCTATGCCTAAGCCAAACCATGAAATCAGG-G
* * * * * *
26081417 TACGGGTGCTCTA-TCGATCGGAGAGGCAGAATACGCAAGCTGGGGATCAGCCCGGTCCCTCCTC
194 TACGGGCGCAC-AGCCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGGTCCC-CCTC
* * * *
26081481 CGTGCTGCCGGTCCTGCTGCCGTAACCCTCGGTCTAGTCCGATCTTACACTGGGAATGAACTT-C
257 CGTGCTGCCGATCCTGCTACCGTAACCCTCGATCTAGTCCGATCTTACACTAGGAATGAA-TTCC
* * * * **
26081545 GTATGCTTAGACTGTGGATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTGCGGGTGC
321 GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCAGGCAC
* * * *
26081610 TCA-G-CC-GG-C-CGGAGAGGCATAATGCGTAAGCTGGGGATCAGCCCAGTCCTCCTCTGCATG
386 TCACGACCGGGCCACGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTACATG
* * * *
26081670 CTACCGATCCCGTTGCCGGTCCTGCTACCACAACCCTCAGTCTGGTTGGGGCTTAGACGTGGAAT
451 CTACCGATCCCGCTGCCAGTCCTGCTACCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAAT
* * *
26081735 GTACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTC-GGCCAATCAGAGAGGC
516 GTACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGACGCTCAGGCCAA-CAGAGAGGC
* ** * * *
26081799 AGAATACGCAAGCTAAGGATCAGCTCGGTTCCTCC-TACGTGCTGCCGATCCTCCTGCCGTAACC
580 AGAATACGCAAGCCAAGGATCAGAACGG-TCCCCCTTACGTGCTGCCGATCCTCCTACCGCAACC
* * * *
26081863 CTCGATTCGGTTCGATGTTAGACTAGGAATGAACTCTATATGCTTAGACTCGAGATGAACTTCGT
644 CTCGATCCGGTTCGATCTTAGACTAGGAATGAACTCTATATGCTTAGAATCGAGATGAACTCCGT
* * *
26081928 ATGCCTAATTCAACTCATGAAACGAGCGTGCAGGCGCTCAGCCGACCAAAGAGGCA
709 ATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAAAGAGGCA
26081984 GGATGCACAA
Statistics
Matches: 640, Mismatches: 108, Indels: 38
0.81 0.14 0.05
Matches are distributed among these distances:
809 3 0.00
810 296 0.46
811 5 0.01
813 1 0.00
814 2 0.00
819 2 0.00
820 1 0.00
821 4 0.01
822 120 0.19
823 114 0.18
824 2 0.00
827 1 0.00
828 1 0.00
831 1 0.00
832 1 0.00
834 86 0.13
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (819 bp):
TATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCATAATGCGC
AAGCCGGGGATCAGCTCGGTCCCCCTCTGCAGCTCGATCTGTCGATCCCACTGCCACAACCCTGG
GTCCGACTGGGGCTTAGACATGGAATGTACTCCCTATGCCTAAGCCAAACCATGAAATCAGGGTA
CGGGCGCACAGCCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGGTCCCCCTCCGTG
CTGCCGATCCTGCTACCGTAACCCTCGATCTAGTCCGATCTTACACTAGGAATGAATTCCGTATG
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCAGGCACTCACG
ACCGGGCCACGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTACATGCTACC
GATCCCGCTGCCAGTCCTGCTACCACAACCCTCAGTCCGGTTGGGGCTTAGACATGGAATGTACT
CCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGACGCTCAGGCCAACAGAGAGGCAGAATA
CGCAAGCCAAGGATCAGAACGGTCCCCCTTACGTGCTGCCGATCCTCCTACCGCAACCCTCGATC
CGGTTCGATCTTAGACTAGGAATGAACTCTATATGCTTAGAATCGAGATGAACTCCGTATGCCTA
AGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCAAAGAGGCATATTACGTAAGCCGGG
GATTGGGTCGGTCCGATCTTAGACAAGGAATGAACTCCA
Found at i:26082003 original size:355 final size:355
Alignment explanation
Indices: 26081361--26082003 Score: 821
Period size: 355 Copynumber: 1.8 Consensus size: 355
26081351 TGGGTCCGAC
** *
26081361 TGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAAACCATGAAACAGGCGTACGGGTGC
1 TGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAAACCACAAAACAGGCGTACGGGCGC
* * * * ** *
26081426 TCTATCGATCGGAGAGGCAGAATACGCAAGCTGGGGATCAGCCCGGTCCCTCCTCCGTGCTGCCG
66 TCGACCAATCAGAGAGGCAGAATACGCAAGCTAAGGATCAGCCCGGTCCCTCCTACGTGCTGCCG
* * * *
26081491 GTCCTGCTGCCGTAACCCTCGGTCTAGTCCGATCTTACACTGGGAATGAACTTCGTATGCTTAGA
131 ATCCTCCTGCCGTAACCCTCGGTCTAGTCCGATCTTACACTAGGAATGAACTTCATATGCTTAGA
* * * * *
26081556 CTGTGGATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCG
196 CTGTAGATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCA
* * ** *
26081621 GAGAGGCATAATGCGTAAGCTGGGGATCAGCCCAGTCCTCCTCTGCATGCTACCGATCCCGTTGC
261 AAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAGTCCTCCTCTGCATGCTACCGATCCCGTTGC
26081686 CGGTCCTGCTACCACAACCCTCAGTCTGGT
326 CGGTCCTGCTACCACAACCCTCAGTCTGGT
* * * * *
26081716 TGGGGCTTAGACGTGGAATGTA-CTTCGTATGCCTAAGCCAACCCACAAAAC-GAGCGTGCGGGC
1 TGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAAACCACAAAACAG-GCGTACGGGC
* * *
26081779 GCTCGGCCAATCAGAGAGGCAGAATACGCAAGCTAAGGATCAGCTCGGTTCCTCCTACGTGCTGC
64 GCTCGACCAATCAGAGAGGCAGAATACGCAAGCTAAGGATCAGCCCGGTCCCTCCTACGTGCTGC
* * * * *
26081844 CGATCCTCCTGCCGTAACCCTCGAT-TCGGTTCGATGTTAGACTAGGAATGAAC-TCTATATGCT
129 CGATCCTCCTGCCGTAACCCTCGGTCT-AGTCCGATCTTACACTAGGAATGAACTTC-ATATGCT
* * *
26081907 TAGACTCG-AGATGAACTTCGTATGCCTAAT-TCAACTCATGAAACGAGCGTGCAGGCGCTCAGC
192 TAGACT-GTAGATGAACTCCGTATGCCT-ATGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
*
26081970 CGACCAAAGAGGCAGGATGCACAAGCCGGGGATC
255 CGACCAAAGAGGCAGAATGCACAAGCCGGGGATC
26082004 GAACAGGTGG
Statistics
Matches: 241, Mismatches: 41, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
354 4 0.02
355 233 0.97
356 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (355 bp):
TGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAAACCACAAAACAGGCGTACGGGCGC
TCGACCAATCAGAGAGGCAGAATACGCAAGCTAAGGATCAGCCCGGTCCCTCCTACGTGCTGCCG
ATCCTCCTGCCGTAACCCTCGGTCTAGTCCGATCTTACACTAGGAATGAACTTCATATGCTTAGA
CTGTAGATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGACCA
AAGAGGCAGAATGCACAAGCCGGGGATCAGCCCAGTCCTCCTCTGCATGCTACCGATCCCGTTGC
CGGTCCTGCTACCACAACCCTCAGTCTGGT
Found at i:26084583 original size:26 final size:26
Alignment explanation
Indices: 26084554--26084606 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26084544 CCAGTCCGAT
26084554 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26084580 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26084606 C
1 C
26084607 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26084926 original size:685 final size:685
Alignment explanation
Indices: 26083687--26084948 Score: 1737
Period size: 685 Copynumber: 1.8 Consensus size: 685
26083677 CGTCCTGCTG
**
26083687 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATAACTAAGCCAACCCAT
* * * ** * *
26083752 GAAATGGGCGTGCGGGCACTCAACCGATCGGAGAGGTTGAATGCGCAAGCTGAGGATCAGCCCGG
66 GAAACGGGCGTGCGGACACTCAACCGACCGGAGAGGCAGAATGCGCAAGCGGAGGATCAGCCCGA
** * * * * *
26083817 TCCCCCCTGCGTACTGTCGATCCTGCTACCGCAGCCCTCGGTCCGGTTCGATCTTAGACTGGGAA
131 TCCCCCCTGCGTACTACCAATCCTGCTACCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAA
* *
26083882 TGAACTCCATATACTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGGGT
196 TGAACTCCATATACTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * ** *
26083947 GCGAGCATTCAGTCGACCGGAGAGGTCGGCCAGAGAGGCATAATTTACAAGCCGGGGATCAGCCC
261 GCGAGCATTCAGTCAACCGAAGAGGCCGGCCAGAGAGGCATAATGCACAAGCCGAGGATCAGCCC
26084012 GATCCCTCTCTACGTGCTGCCAATCCCGCTACCGATCCTGCTACCACAACCCTCGATCCGACTAG
326 GATCCCTCTCTACGTGCTGCCAATCCCGCTACCGATCCTGCTACCACAACCCTCGATCCGACTAG
** * *
26084077 GGCTTAGACATGGAATGTACTCCGTAAGCCTAAGCCAACCCACGAAATGAGTGTACGGGCGCTCA
391 GGCTTAGACATGGAATGTACTCCGTAAGCCTAAGCCAACCCACGAAACAAGCGCACGGGCGCTCA
* * ***
26084142 GCCGACCAGAGAGGTAGAATACGCAAGTCGAGGATCGACCCCGTCCCCCCTACGTGCTGTCGATC
456 ACCGACCAGAGAGGTAGAATACGCAAGCCGAGGATCGACCCCGTCCCCCCTACGTGCAACCGATC
* ** **
26084207 CTGCTGATGCAACCTTCGGTTTGGCTCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
521 CTACTGATGCAACCTTCAATCCGGCTCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
26084272 ACCCGTGAAACGAACGTGCGGGTGCTGAGCCGGTCAAAAACGCATAATACGCAAGCCGAGGATCA
586 ACCCGTGAAACGAACGTGCGGGTGCTGAGCCGGTCAAAAACGCATAATACGCAAGCCGAGGATCA
26084337 GCCCGATCCCCCTCTGTGTGTTGTTGCTCCCGCTA
651 GCCCGATCCCCCTCTGTGTGTTGTTGCTCCCGCTA
* *
26084372 CCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATAACTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATAACTAAGCCAACCCAT
** * *
26084437 GAAACGGGCGTGCGGATGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGA-GAT-AGGCCC
66 GAAACGGGCGTGCGGACACTCAACCGACCGGAGAGGCAGAATGCGCAAG-CGGAGGATCA-GCCC
* * * * *
26084500 GATCCCCTCTGCGTGCTACCAATCCTGTTATCGTAACCCTCGATCCAGTCCGATCTTAGACTGGG
129 GATCCCCCCTGCGTACTACCAATCCTGCTACCGCAACCCTCGATCCAGTCCGATCTTAGACTGGG
* * * *
26084565 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGC
194 AATGAACTCCATATACTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * **
26084630 GTGCGGGCGA-TCAGTCAACCGAAGAGGCCGGTCGGAGAGGCATAATGCGTAAGCCGAGGATCAG
259 GTGCGAGC-ATTCAGTCAACCGAAGAGGCCGGCCAGAGAGGCATAATGCACAAGCCGAGGATCAG
* * * * * * *
26084694 CCCGATCCCTCTCTGCGTGCTGCCGATCCCGCTGCCGGTCTTGCTACCACAACCCTCGATTCGGC
323 CCCGATCCCTCTCTACGTGCTGCCAATCCCGCTACCGATCCTGCTACCACAACCCTCGATCCGAC
* * **
26084759 TGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGCGTGGGCGC
388 TAGGGCTTAGACATGGAATGTACTCCGTAAGCCTAAGCCAACCCACGAAACAAGCGCACGGGCGC
* * * *
26084824 TCAACCGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCG-GCCCGATCCCCCCTCCGTGCAACC
453 TCAACCGACCAGAGAGGTAGAATACGCAAGCCGAGGATCGACCCCG-TCCCCCCTACGTGCAACC
* *
26084888 GATCCTACTG-TCGCAACCCTT-AATCC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGC
517 GATCCTACTGAT-GCAA-CCTTCAATCCGGCTC-AATCTTAGACTGGGAATGAACTCCGTATGC
26084949 TTAGACTGGG
Statistics
Matches: 495, Mismatches: 75, Indels: 14
0.85 0.13 0.02
Matches are distributed among these distances:
684 9 0.02
685 478 0.97
686 8 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (685 bp):
CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATAACTAAGCCAACCCAT
GAAACGGGCGTGCGGACACTCAACCGACCGGAGAGGCAGAATGCGCAAGCGGAGGATCAGCCCGA
TCCCCCCTGCGTACTACCAATCCTGCTACCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAA
TGAACTCCATATACTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
GCGAGCATTCAGTCAACCGAAGAGGCCGGCCAGAGAGGCATAATGCACAAGCCGAGGATCAGCCC
GATCCCTCTCTACGTGCTGCCAATCCCGCTACCGATCCTGCTACCACAACCCTCGATCCGACTAG
GGCTTAGACATGGAATGTACTCCGTAAGCCTAAGCCAACCCACGAAACAAGCGCACGGGCGCTCA
ACCGACCAGAGAGGTAGAATACGCAAGCCGAGGATCGACCCCGTCCCCCCTACGTGCAACCGATC
CTACTGATGCAACCTTCAATCCGGCTCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
ACCCGTGAAACGAACGTGCGGGTGCTGAGCCGGTCAAAAACGCATAATACGCAAGCCGAGGATCA
GCCCGATCCCCCTCTGTGTGTTGTTGCTCCCGCTA
Found at i:26084951 original size:26 final size:26
Alignment explanation
Indices: 26084922--26084974 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26084912 CCGATCTGAT
26084922 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26084948 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26084974 C
1 C
26084975 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26085681 original size:26 final size:26
Alignment explanation
Indices: 26085643--26085695 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26085633 GGTTCAAAAT
*
26085643 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26085669 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
26085695 C
1 C
26085696 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26086180 original size:26 final size:26
Alignment explanation
Indices: 26086144--26086196 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26086134 CTGGTCCGAT
*
26086144 CTTAGACTGGGAAGGAACTTCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
* * *
26086170 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCGTATG
26086196 C
1 C
26086197 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTATG
Found at i:26089135 original size:159 final size:159
Alignment explanation
Indices: 26088839--26089196 Score: 353
Period size: 159 Copynumber: 2.3 Consensus size: 159
26088829 GCTCCGTATG
* * * *
26088839 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAGC
* * * * **** * **
26088904 CGGTCGGAGAGGCAGAATGTGAAAGCTGGGGATCGACTTGGTTCCCCCTTGTGTCCTGTCCTTCC
66 CGGCCGAAGAGGCAGAATGGGAAAGCCGGGGATCGACTCCAATCCCCCTTGTGTCCTGGCAGTCC
*
26088969 TGCTGCCACAACCCTCGGTTCGGTCCAAT
131 CGCTGCCACAACCCTCGGTTCGGTCCAAT
* * * *
26088998 CTTAGAC-TGGAAATGAACTTCGTATGCATAAGTCAACCCACAAAACGAGCGTGCAGGCGCTGAG
1 CTTAGACATGG-AATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAG
* * * * *
26089062 CCGGCCGAAGAGGCATAATGGGCAAGCCGGGGATCGGC-CCAATCCCCTTCTGTGTGCTGGCAGT
65 CCGGCCGAAGAGGCAGAATGGGAAAGCCGGGGATCGACTCCAATCCCCCT-TGTGTCCTGGCAGT
* * * **
26089126 CCCGTTGCCACAACCCTCGGTCCGG-CTAGGG
129 CCCGCTGCCACAACCCTCGGTTCGGTCCA-AT
* * * * *
26089157 CTTAGACATAGACTGAGCTCCCTATGCCTAAGCCAACCCA
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCA
26089197 TGAAACGGGC
Statistics
Matches: 158, Mismatches: 37, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
158 11 0.07
159 145 0.92
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAGC
CGGCCGAAGAGGCAGAATGGGAAAGCCGGGGATCGACTCCAATCCCCCTTGTGTCCTGGCAGTCC
CGCTGCCACAACCCTCGGTTCGGTCCAAT
Found at i:26091199 original size:26 final size:26
Alignment explanation
Indices: 26091163--26091215 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26091153 CCAGTCTGAT
26091163 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26091189 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26091215 C
1 C
26091216 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26091561 original size:26 final size:26
Alignment explanation
Indices: 26091532--26091584 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26091522 CCGATCTGAT
*
26091532 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
26091558 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26091584 C
1 C
26091585 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26092277 original size:26 final size:26
Alignment explanation
Indices: 26092239--26092291 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26092229 GGTTCAAAAT
*
26092239 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26092265 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
26092291 C
1 C
26092292 CTAAGCGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26092776 original size:26 final size:26
Alignment explanation
Indices: 26092740--26092792 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26092730 CCGGTCCGAT
*
26092740 CTTAGATTGGGAAGGAACTTCGTATG
1 CTTAGATTGGGAAGGAACTCCGTATG
* *
26092766 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAAGGAACTCCGTATG
26092792 C
1 C
26092793 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAAGGAACTCCGTATG
Found at i:26093861 original size:26 final size:26
Alignment explanation
Indices: 26093831--26093883 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26093821 AGCTCAAAAT
* *
26093831 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
26093857 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
26093883 C
1 C
26093884 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:26094369 original size:26 final size:26
Alignment explanation
Indices: 26094333--26094385 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26094323 CCGAGTCGAT
* *
26094333 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26094359 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26094385 C
1 C
26094386 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26096120 original size:26 final size:26
Alignment explanation
Indices: 26096050--26096128 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
26096040 CTGGTCTGAT
*
26096050 CTTAGACTGGGAATGAACGCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26096076 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
26096102 CTTAGACTGGGGATCAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26096128 C
1 C
26096129 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26096472 original size:26 final size:26
Alignment explanation
Indices: 26096443--26096495 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26096433 CCGGTCTGAT
*
26096443 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
26096469 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
26096495 C
1 C
26096496 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:26098013 original size:26 final size:26
Alignment explanation
Indices: 26097977--26098029 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26097967 CTGGTTCGAT
26097977 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGGATGAACTCCGTATG
*
26098003 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGATTGGGGATGAACTCCGTATG
26098029 C
1 C
26098030 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGGATGAACTCCGTATG
Found at i:26099002 original size:29 final size:29
Alignment explanation
Indices: 26098970--26099026 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
26098960 GCACTGAGCC
*
26098970 GGCCGAAGAGGCATAATGCACAAGCCGGG
1 GGCCGAAGACGCATAATGCACAAGCCGGG
26098999 GGCCGAAGACGCATAATGCACAAGCCGG
1 GGCCGAAGACGCATAATGCACAAGCCGG
26099027 AGATCAGCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.26, G:0.35, T:0.07
Consensus pattern (29 bp):
GGCCGAAGACGCATAATGCACAAGCCGGG
Found at i:26099285 original size:26 final size:26
Alignment explanation
Indices: 26099249--26099301 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26099239 CCAGTTTGAT
26099249 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26099275 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26099301 C
1 C
26099302 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26100078 original size:26 final size:26
Alignment explanation
Indices: 26100028--26100080 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26100018 CCGGTCTGAT
* **
26100028 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26100054 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26100080 C
1 C
26100081 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26101134 original size:26 final size:26
Alignment explanation
Indices: 26101105--26101157 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26101095 GGCTCAAAAT
* *
26101105 CTTACAC-TGGGAATGAGCTTCGTATG
1 CTTACACAT-GGAATGAACTCCGTATG
*
26101131 CTTAGACATGGAATGAACTCCGTATG
1 CTTACACATGGAATGAACTCCGTATG
26101157 C
1 C
26101158 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACATGGAATGAACTCCGTATG
Found at i:26101641 original size:26 final size:26
Alignment explanation
Indices: 26101605--26101657 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26101595 TCAGGTTTGA
26101605 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
* * *
26101631 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
26101657 C
1 C
26101658 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:26102715 original size:26 final size:26
Alignment explanation
Indices: 26102686--26102741 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
26102676 CTGGCCCGAT
*
26102686 CTTAGACT-AGGAATGAACTCTGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
*
26102712 CTTAGTCTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
26102738 CTTA
1 CTTA
26102742 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:26103036 original size:171 final size:171
Alignment explanation
Indices: 26102728--26103099 Score: 435
Period size: 171 Copynumber: 2.2 Consensus size: 171
26102718 CTGAGGATGA
* * * ** *
26102728 ACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGTCAGAGAGGCATA
1 ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCACTCAACCGGTCAGAGAGGAATA
* * * * * * *
26102793 ATGCACAAGCTTGGGATTAGCCTGGTCTCCCTCTGCGTGCTGTCGATCCCACTGCCGATCCTGCT
66 ATGCACAAGCTGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCCGATCCCACTGCCGATCCTACT
* * **
26102858 GCCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGT
131 ACCACAACCCTCGATCCAGCTGGGGCTTAGACGTGGAATGT
* * *
26102899 ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATTCGTGCACTCAACCGG-CTGAAGAGGAAT
1 ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCACTCAACCGGTCAG-AGAGGAAT
* * * * * *
26102963 AATGCGTA-AATC-GGGGATCAACCCGGTCCCCCTCTGTGTGCTGCCGATCTCGCTGTCGGTCCT
65 AATGC--ACAAGCTGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCCGATCCCACTGCCGATCCT
*
26103026 ACTACCACAACCCTCGATCCAGCTGGGGCTTAGATGTGGAATGT
128 ACTACCACAACCCTCGATCCAGCTGGGGCTTAGACGTGGAATGT
* *
26103070 ACTCTGTATGCCTAAGCCAACCCACGAAAC
1 ACTCCGTATGCCTAAGTCAACCCACGAAAC
26103100 CAGCGTATGG
Statistics
Matches: 169, Mismatches: 29, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
170 2 0.01
171 163 0.96
172 3 0.02
173 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.22
Consensus pattern (171 bp):
ACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCACTCAACCGGTCAGAGAGGAATA
ATGCACAAGCTGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCCGATCCCACTGCCGATCCTACT
ACCACAACCCTCGATCCAGCTGGGGCTTAGACGTGGAATGT
Found at i:26103140 original size:171 final size:170
Alignment explanation
Indices: 26102816--26103189 Score: 419
Period size: 171 Copynumber: 2.2 Consensus size: 170
26102806 GGATTAGCCT
* * * * * * * **
26102816 GGTCTCCCTCTGCGTGCTGTCGATCCCACTGCCGATCCTGCTGCCACAACCCTCGGTCTGGCTGG
1 GGTCCCCCTCTGTGTGCTGTCGAT-CCGCTGTCGATCCTACTACCACAACCCTCGATCCAGCTGG
* *
26102881 GGCTTAGACGTGGAATGTACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATTCGTGCACTCA
65 GGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATTCGGGCACTCA
* * * * *
26102946 ACCGGCTGAAGAGGAATAATGCGTAAATCGGGGATCAACCC
130 ACCGACCGAAGAGGAAGAATGCGTAAACCGAGGATCAACCC
* *
26102987 GGTCCCCCTCTGTGTGCTGCCGATCTCGCTGTCGGTCCTACTACCACAACCCTCGATCCAGCTGG
1 GGTCCCCCTCTGTGTGCTGTCGATC-CGCTGTCGATCCTACTACCACAACCCTCGATCCAGCTGG
* * * * *
26103052 GGCTTAGATGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACCAGCGTAT-GGGCGCTC
65 GGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGCAT-TCGGGCACTC
* * * * * * *
26103116 AGCTGACCGGAGAGGTAGAATGCGTAAGCCGAGGATCGACCT
129 AACCGACCGAAGAGGAAGAATGCGTAAACCGAGGATCAACCC
*
26103158 GGTCCCTC-CTGTGTGCTGTCGATCCTGCTGTC
1 GGTCCCCCTCTGTGTGCTGTCGATCC-GCTGTC
26103190 ACAACCCTCG
Statistics
Matches: 168, Mismatches: 32, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
169 1 0.01
170 22 0.13
171 144 0.86
172 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.26, T:0.22
Consensus pattern (170 bp):
GGTCCCCCTCTGTGTGCTGTCGATCCGCTGTCGATCCTACTACCACAACCCTCGATCCAGCTGGG
GCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATTCGGGCACTCAA
CCGACCGAAGAGGAAGAATGCGTAAACCGAGGATCAACCC
Found at i:26103543 original size:367 final size:367
Alignment explanation
Indices: 26103030--26103873 Score: 1014
Period size: 367 Copynumber: 2.3 Consensus size: 367
26103020 GGTCCTACTA
* * **
26103030 CCACAACCCTCGATCCAGCTGGGGCTTAGATGTGGAATGTACTCTGTATGCCTAAGCCAACCCAC
1 CCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCCAC
* * * * * * * * *
26103095 GAAACCAGCGTATGGGCGCTCAGCTGACCGGAGAGGTAGAATGCGTAAGCCGAGGATCGACCTGG
66 GAAACGAGCGTACGGGCGCTCAGCCG-CTGGAGAGGCAGAATGCATAAACCGAGGATCGACCCGA
* ** * * **
26103160 TCCCTCCTGTGTGCTGTCGATCCTGCTGTCACAACCCTCGATCCGGTTCAATCTTAGACTGGGAA
130 TCCCCCCTACGTGCTGTCGATCCTACTATCACAACCCTCGATCCACTTCAATCTTAGACTGGGAA
* *
26103225 TGAACTCCATAAGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCAT
195 TGAACCCCATAAGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCAT
* * * * *
26103290 GCGGGCACTTAGT-TGATCGAAGAGGCCGACC-AGAGAGGCATAATGCATAAGCCGGGGATCAGC
260 ACGGGCACTCAGTCAG-TCGAAGAGGCCGACCGA-AGAGGCATAATGCACAAGCCGGGGATCAAC
* *
26103353 CCGAT-CCCCTCTGCATGTTGTCAATCCCAC-ACCCAGTCCTGCTG
323 CCGATCCCCCTCCGCATGCTGTCAATCCCACTACCCA-TCCTGCTG
* * *
26103397 CCATAACCCTTGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCCAC
* * * *
26103462 GAAACGAGTGTGCGGGCGCTCAGCCAGCTGGAGACGCAGAATGCATAAACCTG-GGATCGGCCCG
66 GAAACGAGCGTACGGGCGCTCAGCC-GCTGGAGAGGCAGAATGCATAAACC-GAGGATCGACCCG
* * * ** *
26103526 ATCCCCCCTACGTGCTGTCGATCCTACTATCGCAACCCTTGATCTACTTTGATCTTAGACTGTGA
129 ATCCCCCCTACGTGCTGTCGATCCTACTATCACAACCCTCGATCCACTTCAATCTTAGACTGGGA
* * * ** *
26103591 ATGAACCCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCG
194 ATGAACCCCATAAGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCA
* * * *
26103656 TACGGGCACTCAGTCAGTCGGAGAGGTCGACCGAAGAGGTATAATGCACAAGCCGGGGATCAACT
259 TACGGGCACTCAGTCAGTCGAAGAGGCCGACCGAAGAGGCATAATGCACAAGCCGGGGATCAACC
* * * *
26103721 CGATCCCCCTCCGCGTGCTGTCGATCCCACTATCGATCCTGCTG
324 CGATCCCCCTCCGCATGCTGTCAATCCCACTACCCATCCTGCTG
** * * *
26103765 CCACAACCCTTGGTCCAATTCGGGCTTGGACATGGAATGTACTCTGTATGCCTAAGCCTACCCAC
1 CCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCCAC
* * *
26103830 GAAATGAGCGTACGGGCGTTCAGCCGATCGGAGAGGCAGAATGC
66 GAAACGAGCGTACGGGCGCTCAGCCGCT-GGAGAGGCAGAATGC
26103874 GCAAGTCGGG
Statistics
Matches: 400, Mismatches: 70, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
367 272 0.68
368 125 0.31
369 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (367 bp):
CCACAACCCTTGGTCCAGCTGGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCCAC
GAAACGAGCGTACGGGCGCTCAGCCGCTGGAGAGGCAGAATGCATAAACCGAGGATCGACCCGAT
CCCCCCTACGTGCTGTCGATCCTACTATCACAACCCTCGATCCACTTCAATCTTAGACTGGGAAT
GAACCCCATAAGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCATA
CGGGCACTCAGTCAGTCGAAGAGGCCGACCGAAGAGGCATAATGCACAAGCCGGGGATCAACCCG
ATCCCCCTCCGCATGCTGTCAATCCCACTACCCATCCTGCTG
Found at i:26103620 original size:26 final size:26
Alignment explanation
Indices: 26103579--26103631 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26103569 CTACTTTGAT
*
26103579 CTTAGACTGTGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
* **
26103605 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
26103631 C
1 C
26103632 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:26103954 original size:26 final size:26
Alignment explanation
Indices: 26103918--26103970 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26103908 CCGGTCCGAT
*
26103918 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
* *
26103944 CTTAGACTGGGGATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
26103970 C
1 C
26103971 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:26104995 original size:26 final size:26
Alignment explanation
Indices: 26104959--26105011 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26104949 CTGGTCTGAT
26104959 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
26104985 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26105011 C
1 C
26105012 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26105356 original size:26 final size:26
Alignment explanation
Indices: 26105327--26105379 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26105317 CTAATCCGAT
26105327 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
26105353 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26105379 C
1 C
26105380 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26105629 original size:16 final size:17
Alignment explanation
Indices: 26105608--26105643 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
26105598 AGGTAGAATG
26105608 TGCGGGT-CCCCCTACA
1 TGCGGGTCCCCCCTACA
26105624 TGCGGGTCCCCCCTACA
1 TGCGGGTCCCCCCTACA
26105641 TGC
1 TGC
26105644 TACCGATCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.11, C:0.44, G:0.25, T:0.19
Consensus pattern (17 bp):
TGCGGGTCCCCCCTACA
Found at i:26105666 original size:355 final size:354
Alignment explanation
Indices: 26104956--26105786 Score: 907
Period size: 355 Copynumber: 2.3 Consensus size: 354
26104946 GGTCTGGTCT
*
26104956 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
** * * * * *
26105021 CCCATGAAATTAGTGTGCGGGCATTCAACCGATCGAAGAGGCCGATCGAATAGGCATAATGTGCA
66 CCCATGAAACGAGCGTGCGGGCACTC-A--G-TC---GA---C--T-GGAGAGGCATAATGCGCA
* * * * *
26105086 AGTCGAGGATCAGCCCGATCCCCCACTGCATGCTGTCGATCTCGCTGTCGGTCCTGCTACCACAA
118 AGCCGAGGATCAGCCCGATCCCCCACTGCATACTGTCGATCTCACTGCCGATCCTGCTACCACAA
* * *
26105151 CCCTCAGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACG
183 CCCTCAGTCCGGCTGGGGCTTAGACATGGAATGCACTCCATATGCCTAAGCCAACCCACGAAACG
* * * *** *
26105216 AGCGTGCGGGCGCTCAGTCGATCGGTGAGGCAGAATGCGCAAGCCGGGGATCAGTCCGATCCCTC
248 AGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCCCCGATCAGTCCGATCCCCC
** * * * * *
26105281 ATGTGCGTTGCTGATCTTGCTACCGCAACCCTCGA-TCTAATCC
313 ACATGCG-TACCGATCCTGCTACCGCAACCCTCAATTC-AATAC
*
26105324 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAA
1 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
*
26105389 CCCATGAAACGAGCGTGTGGGCACTCAGTCGACTGGAGAGGCATAATGCGCAAGCCCG-GGATCA
66 CCCATGAAACGAGCGTGCGGGCACTCAGTCGACTGGAGAGGCATAATGCGCAAG-CCGAGGATCA
** * *
26105453 GCCCGATCCCCTTCTGCATACTGTCGATCTCACTGCCGATCCTGCTGCCACAACCTTCAGTCCGG
130 GCCCGATCCCCCACTGCATACTGTCGATCTCACTGCCGATCCTGCTACCACAACCCTCAGTCCGG
** *
26105518 CTGGGGCTTAGATGTGGAATGCACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTG
195 CTGGGGCTTAGACATGGAATGCACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG
* * ** * * *
26105583 CTCAGCCGACCGGAGAGGTAGAATGTGCGGGTCCCCCTA-CA-TGCGGGTCCCCCCTACATGC-T
260 CTCAGCCGACCGGAGAGGCAGAATGCGCAAG-CCCCCGATCAGT-CCGAT-CCCCC-ACATGCGT
*** **
26105645 ACCGATCCTGCTGTTGCAACCCTCAATTCGGTAC
321 ACCGATCCTGCTACCGCAACCCTCAATTCAATAC
* * * *
26105679 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATGAACCCCGTATGCCTAAGTCAA
1 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * * **
26105744 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCA
66 CCCATGAAACGAGCGTGCGGGCACTCAGTCGACTGGAGAGGCA
26105787 GGGTGCGTAA
Statistics
Matches: 395, Mismatches: 62, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
354 1 0.00
355 287 0.73
356 12 0.03
357 4 0.01
358 1 0.00
361 2 0.01
364 2 0.01
365 1 0.00
367 1 0.00
368 84 0.21
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (354 bp):
GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
CCCATGAAACGAGCGTGCGGGCACTCAGTCGACTGGAGAGGCATAATGCGCAAGCCGAGGATCAG
CCCGATCCCCCACTGCATACTGTCGATCTCACTGCCGATCCTGCTACCACAACCCTCAGTCCGGC
TGGGGCTTAGACATGGAATGCACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGACCGGAGAGGCAGAATGCGCAAGCCCCCGATCAGTCCGATCCCCCACATGCGTACCGA
TCCTGCTACCGCAACCCTCAATTCAATAC
Found at i:26105723 original size:26 final size:26
Alignment explanation
Indices: 26105682--26105734 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26105672 TCGGTACAAT
*
26105682 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
26105708 CTTAGACTGAGG-ATGAACCCCGTATG
1 CTTAGACTG-GGAATGAACCCCGTATG
26105734 C
1 C
26105735 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:26106288 original size:11 final size:11
Alignment explanation
Indices: 26106272--26106302 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
26106262 GGTTAGGCTT
*
26106272 TCCGACGATGC
1 TCCGACAATGC
26106283 TCCGACAATGC
1 TCCGACAATGC
26106294 TCCGACAAT
1 TCCGACAAT
26106303 TGTACCCGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.26, C:0.35, G:0.19, T:0.19
Consensus pattern (11 bp):
TCCGACAATGC
Found at i:26106903 original size:26 final size:26
Alignment explanation
Indices: 26106873--26106925 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26106863 CCATTCTGAT
*
26106873 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
* * *
26106899 CTTAGAGAGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
26106925 C
1 C
26106926 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:26107161 original size:184 final size:184
Alignment explanation
Indices: 26106778--26107212 Score: 500
Period size: 184 Copynumber: 2.4 Consensus size: 184
26106768 TAGGCGCTCA
* * * * * *
26106778 ACCGGCCGAAGAGGCAGAATGTGCAAGCCTGGGATCGGCTCGATCCCCTCTGCGTGCT-ACTGAT
1 ACCGGTCGAAGAGGCAAAATGTGCAAGCCAGGGATCAGCTCGATCCCCCCTGCGTGCTGTC-GAT
* * * ** *
26106842 CCTATTGTCGCAACCCTCGGTCCATTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGAGA
65 CCTACTGTCGCAACCCTCGATCCATTCCGATCTTAGACAAGGAATGAACTCCATATGCTTAGACA
* * * * *
26106907 GGGGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCACTCC
130 GGCGATGAACTCCGTATACCTAAGTCAACACAAGAAACGAGCGTACCGGCACTCC
** * * *
26106962 ACCGGTCGAAGAGGCAAAATGCACAAGCCGGGGATCAGCTCGATCCCCCCCGCATGCTGTCGATC
1 ACCGGTCGAAGAGGCAAAATGTGCAAGCCAGGGATCAGCTCGATCCCCCCTGCGTGCTGTCGATC
* * * *
26107027 CTACTGTCGCAACCCTCGATCTGA-TCCGATCTTAGACAAGGAATGAACTTCGTATGCTTAGACT
66 CTACTGTCGCAACCCTCGATC-CATTCCGATCTTAGACAAGGAATGAACTCCATATGCTTAGACA
* **
26107091 GGCGATGAACTCCGTATACCTAAGTCAACACACGAAACGAGCGTACCGGTGCT-C
130 GGCGATGAACTCCGTATACCTAAGTCAACACAAGAAACGAGCGTACCGGCACTCC
* * * *
26107145 AGCCGGTC-AGAGAGGCATAATGTGTAAGCCAGGGATTAGCCCGATCCCCCTCTGCGTGCTGTCG
1 A-CCGGTCGA-AGAGGCAAAATGTGCAAGCCAGGGATCAGCTCGATCCCCC-CTGCGTGCTGTCG
26107209 ATCC
63 ATCC
26107213 CTCTACCAGT
Statistics
Matches: 209, Mismatches: 37, Indels: 9
0.82 0.15 0.04
Matches are distributed among these distances:
183 3 0.01
184 189 0.90
185 17 0.08
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
ACCGGTCGAAGAGGCAAAATGTGCAAGCCAGGGATCAGCTCGATCCCCCCTGCGTGCTGTCGATC
CTACTGTCGCAACCCTCGATCCATTCCGATCTTAGACAAGGAATGAACTCCATATGCTTAGACAG
GCGATGAACTCCGTATACCTAAGTCAACACAAGAAACGAGCGTACCGGCACTCC
Found at i:26107442 original size:21 final size:21
Alignment explanation
Indices: 26107391--26107442 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
26107381 TCCCTCTACC
* *
26107391 GGTCTTGCTACCACAACCCTT
1 GGTCTGGCTGCCACAACCCTT
*
26107412 GGTCTGGCTGCCATAACCCTT
1 GGTCTGGCTGCCACAACCCTT
26107433 GGTCTGGCTG
1 GGTCTGGCTG
26107443 GGGCTTAGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.13, C:0.33, G:0.25, T:0.29
Consensus pattern (21 bp):
GGTCTGGCTGCCACAACCCTT
Found at i:26109169 original size:26 final size:26
Alignment explanation
Indices: 26109140--26109192 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26109130 CCGATCCGAT
26109140 CTTAGA-TTGTGAATGAACTCCGTATG
1 CTTAGACTT-TGAATGAACTCCGTATG
*
26109166 CTTAGACTTTGGATGAACTCCGTATG
1 CTTAGACTTTGAATGAACTCCGTATG
26109192 C
1 C
26109193 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGACTTTGAATGAACTCCGTATG
Found at i:26109369 original size:184 final size:181
Alignment explanation
Indices: 26109060--26109413 Score: 523
Period size: 184 Copynumber: 1.9 Consensus size: 181
26109050 AAACGAGCGT
* * ** * *
26109060 AGAATGCACAAGTCAGGGATCGGCCCGGTCCCCGTTGCGTGCTGTCGATCCTGCTGCCGTAGCCC
1 AGAATGCACAAGCCAGGGATCGGCCCGGTCCCCGATGCGTGCTACCGATCCTACTACCGTAGCCC
* * *
26109125 TCGATCCGATCCGATCTTAGATTGTGAATGAACTCCGTATGCTTAGACTTTGGATGAACTCCGTA
66 TCGATCCGATCCGATCTTAGACTGGGAATGAACCCCGTATGCTTAGACTTTGGATGAACTCCGTA
* *
26109190 TGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGAAAAGGC
131 TGCCTAAGTC-ACCAACG-AACAAGCGTGCGGGC-CACAGTCGGTCGAAAAGGC
26109244 AGAATGCACAAGCC-GAGGATCGGCCCGGTCCCTC-ATGCGTGCTACCGATCCTACTACCGTAGC
1 AGAATGCACAAGCCAG-GGATCGGCCCGGTCCC-CGATGCGTGCTACCGATCCTACTACCGTAGC
*
26109307 TCTCGATCCGATCCGATCTTAGACTGGGAATGAACCCCGTATGCTTAGACTTTGGATGAACTCCG
64 CCTCGATCCGATCCGATCTTAGACTGGGAATGAACCCCGTATGCTTAGACTTTGGATGAACTCCG
* *
26109372 TATGCCTATGTCACCCACGAACAAGCGTGCGGGCCACAGTCG
129 TATGCCTAAGTCACCAACGAACAAGCGTGCGGGCCACAGTCG
26109414 ACGAAACGGC
Statistics
Matches: 154, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
181 7 0.05
182 14 0.09
183 7 0.05
184 125 0.81
185 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (181 bp):
AGAATGCACAAGCCAGGGATCGGCCCGGTCCCCGATGCGTGCTACCGATCCTACTACCGTAGCCC
TCGATCCGATCCGATCTTAGACTGGGAATGAACCCCGTATGCTTAGACTTTGGATGAACTCCGTA
TGCCTAAGTCACCAACGAACAAGCGTGCGGGCCACAGTCGGTCGAAAAGGC
Found at i:26110595 original size:12 final size:12
Alignment explanation
Indices: 26110578--26110603 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26110568 CCCTCTGCAT
26110578 GCTGTCGATCCC
1 GCTGTCGATCCC
26110590 GCTGTCGATCCC
1 GCTGTCGATCCC
26110602 GC
1 GC
26110604 AACTGGGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.42, G:0.27, T:0.23
Consensus pattern (12 bp):
GCTGTCGATCCC
Found at i:26112935 original size:159 final size:156
Alignment explanation
Indices: 26112594--26113254 Score: 540
Period size: 159 Copynumber: 4.2 Consensus size: 156
26112584 GCTCCATATG
* * *
26112594 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCGAGAAACGAGCGTGTGGGCGCTT-A
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCC-AGAAACGAGCGTGCGGGCG-TTGA
* * * * **
26112657 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCCTCCTGTGTGCTGTCGATC
63 GCC-GCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTCCGTGCTGTCGATC
* *
26112722 CTGCTACTGCAACCCTCGGTCTGGTCCAAT
127 CTGCTACCGCAACCCTCAGTCTGGTCCAAT
* *
26112752 CTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCA-GAAACGAGCGTGCGGGCGTTGAGC
* *
26112817 CAGCCGAAGAGGCATAATACGCAAGCCGGGGATCGACTCGGTGCCCCCCTCCGTGCTGTCGATCC
65 C-GCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGT-CCCCCCTCCGTGCTGTCGATCC
***
26112882 TGCTACCGCAACCCTCAGTCTGGTTTGAT
128 TGCTACCGCAACCCTCAGTCTGGTCCAAT
* *
26112911 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCA-GAAACGAGCGTGCGGGCGTTGAGC
* * * * ** * * * *
26112976 CGATCGAAGAGGCATAATGCACAAGCTGGGAATCGACCCAATCCCCCTTTGCGTGCTGCCAATCC
65 CG-CCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTCCGTGCTGTCGATCC
* * *****
26113041 CGC-AGCCACAACCCTCAGT-TCGGTTGGGG
128 TGCTA-CCGCAACCCTCAGTCT-GGTCCAAT
* * * * * * ** * *
26113070 CTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCACTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCA-GAAACGAGCGTGCGGGCGTTGAG
* * * * * * * * * * **
26113134 CCGGCTAGAGAGGTAGAATGCGTAAGTCAGGGATCGGCCTGGTCCCCCCTACGTGCTACCGATCC
64 CCGCCGA-AGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTCCGTGCTGTCGATCC
* * * * ****
26113199 TGCTATCGCAACCATCGGTCCGGGGTGAT
128 TGCTACCGCAACCCTCAGTCTGGTCCAAT
*
26113228 CTTAGACTGGGAATGAACTCCCTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
26113255 TTAGACTGGG
Statistics
Matches: 408, Mismatches: 82, Indels: 26
0.79 0.16 0.05
Matches are distributed among these distances:
157 5 0.01
158 151 0.37
159 251 0.62
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCAGAAACGAGCGTGCGGGCGTTGAGCC
GCCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTCCGTGCTGTCGATCCTGC
TACCGCAACCCTCAGTCTGGTCCAAT
Found at i:26113264 original size:26 final size:26
Alignment explanation
Indices: 26113228--26113280 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26113218 CCGGGGTGAT
26113228 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
* *
26113254 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
26113280 C
1 C
26113281 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:26113604 original size:26 final size:26
Alignment explanation
Indices: 26113575--26113625 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26113565 CCGGTCCGAT
26113575 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
* *
26113601 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
26113626 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:26113694 original size:347 final size:347
Alignment explanation
Indices: 26113045--26113694 Score: 837
Period size: 347 Copynumber: 1.9 Consensus size: 347
26113035 CAATCCCGCA
**
26113045 GCCACAACCCTCAGTTCGGTTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCA
1 GCCACAACCCTCAGTTCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCA
* * * * *
26113110 CGAAACGGGTGTGCGGGCACTCAACCGGCTAGAGAGGTAGAATGCGTAAGTCAGGGATCGGCCTG
66 CGAAACGAGCGTACGGGAACTCAACCGGCTAGAGAGCTAGAATGCGTAAGTCAGGGATCGGCCTG
* * **
26113175 GTCCCCCCTACGTGCTACCGATCCTGCTATCGCAACCATCGGTCCGGGGTGATCTTAGACTGGGA
131 ATCCCCCCTACGTGCTACCGATCCTGCTATCGCAACCATCGATCCGGGCCGATCTTAGACTGGGA
*
26113240 ATGAACTCCCTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
196 ATGAACTCCCTATACTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
* ** *
26113305 TACAAGCGCTCAGCCGGTCAGAGAGGCATAATGCGTAAGCCGGCCCGATCCTCCCTATGTCCTGC
261 TACAAGCGCTCAACCGACCAGAGAGGCATAATGCGCAAGCCGGCCCGATCCTCCCTATGTCCTGC
26113370 CGATCCCGCTACTGATCCTGCT
326 CGATCCCGCTACTGATCCTGCT
* * * * *
26113392 GCCATAACCCTCGGTTCGACTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCTAACCC
1 GCCACAACCCTCAGTTCGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCC
** * *
26113456 ACGAAACGAGCGTACGGGAACTCAGTC-GATCGGAGAGCTAGAATGCGTAAGTC-GAGGATCGG-
65 ACGAAACGAGCGTACGGGAACTCAACCGGCT-AGAGAGCTAGAATGCGTAAGTCAG-GGATCGGC
* ** * * * * *
26113518 TTCGATCCCCCCTGTGTGCTGCTGATCCTGCTGTCAG-AACCCTCGATCCGGTCCGATCTTAGAC
128 CT-GATCCCCCCTACGTGCTACCGATCCTGCTATC-GCAACCATCGATCCGGGCCGATCTTAGAC
* *
26113582 TGGGAATGAACTCCGTATACTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAAC
191 TGGGAATGAACTCCCTATACTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
****
26113647 GAGCGTGTGGGCGCTCAACCGACCATG-GAGGCA-AGATGCGCAAGCCGG
256 GAGCGTACAAGCGCTCAACCGACCA-GAGAGGCATA-ATGCGCAAGCCGG
26113695 GGATCGAACA
Statistics
Matches: 257, Mismatches: 39, Indels: 14
0.83 0.13 0.05
Matches are distributed among these distances:
346 5 0.02
347 249 0.97
348 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (347 bp):
GCCACAACCCTCAGTTCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCA
CGAAACGAGCGTACGGGAACTCAACCGGCTAGAGAGCTAGAATGCGTAAGTCAGGGATCGGCCTG
ATCCCCCCTACGTGCTACCGATCCTGCTATCGCAACCATCGATCCGGGCCGATCTTAGACTGGGA
ATGAACTCCCTATACTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
TACAAGCGCTCAACCGACCAGAGAGGCATAATGCGCAAGCCGGCCCGATCCTCCCTATGTCCTGC
CGATCCCGCTACTGATCCTGCT
Found at i:26114325 original size:26 final size:26
Alignment explanation
Indices: 26114296--26114348 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26114286 GGCTCAAAAC
*
26114296 CTTAGA-ATGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
26114322 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26114348 C
1 C
26114349 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26114826 original size:26 final size:26
Alignment explanation
Indices: 26114797--26114849 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26114787 TCGATCTGAT
26114797 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
26114823 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
26114849 C
1 C
26114850 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:26115591 original size:13 final size:13
Alignment explanation
Indices: 26115573--26115610 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
26115563 GCGCTCAGCC
26115573 GGTCGGAGAGGCT
1 GGTCGGAGAGGCT
26115586 GGTCGGAGAGGCT
1 GGTCGGAGAGGCT
* *
26115599 GGCCGGAAAGGC
1 GGTCGGAGAGGC
26115611 ATAATAAGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.53, T:0.11
Consensus pattern (13 bp):
GGTCGGAGAGGCT
Found at i:26116379 original size:26 final size:26
Alignment explanation
Indices: 26116350--26116402 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26116340 CCGATTCGAT
26116350 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26116376 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26116402 C
1 C
26116403 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26116746 original size:26 final size:27
Alignment explanation
Indices: 26116717--26116774 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
26116707 CCGGTTTGAT
26116717 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
* *
26116743 CTTAGACTGGGGATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
26116770 CTTAG
1 CTTAG
26116775 TCAACCCATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:26117075 original size:368 final size:366
Alignment explanation
Indices: 26116164--26117185 Score: 1244
Period size: 367 Copynumber: 2.8 Consensus size: 366
26116154 TATCGATCCC
** * * *
26116164 GCTGCCACAACCCTCGGTCCGGTTGGGGCTTACACATGCAATG-AGCTCCCTATGCCTAAGCCAA
1 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAA
** * * * * * * *
26116228 TGCATGAAACGGGCGTGCGGGCACTCAGCCGACCGAAGAGGCAAAATGCACAAGCCAAGGATCGG
65 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGA
* ** ** * *
26116293 CCCGGTTCTGCCTGCGTGCTACCGATCCTGCTACCGTAACCCTC-AGTCCGATTCGATCTTAGAC
130 CCCGGTCCCCCCTGCGTGCTACCGATCCTGCT-CCACAACCCTCGA-TCCGGTTTGATCTTAGAC
*
26116357 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
193 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
* * * *
26116422 GAGCGTGTGGGCGCTCAACCGACCGGAGAGGTCGGTCGAGAGGCATAATACGCAAGCCGAGGATC
258 GAGCGTGCGGGCGCTCAACCGACCGGAGAGGCCGGCCGAGAGGCATAATACACAAGCCGAGGATC
** ** *
26116487 AATTCGATCCCCCTCTGTGTGCTACCGATCCCGCTGCCGGTCCT
323 AACCCGATCCCCCTCTACGTGCTACCGATCCCCCTGCCGGTCCT
* * * *
26116531 GTTGCCACAACCCTCGGTCCAACTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAAC
* * * * * * * * * *
26116596 CCACGAAACGAGCGTACGGGTGCTCAGCCGGTCAGAGAGGCAGAATACAGAAGTCGGGGATCGAT
66 CCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGAC
* * * *
26116661 TCGGTCCCTCTTGCGTGCTACCGATCCTGCTACAGCAACCCTCGATCCGGTTTGATCTTAGACTG
131 CCGGTCCCCCCTGCGTGCTACCGATCCTGCTCCA-CAACCCTCGATCCGGTTTGATCTTAGACTG
* * *
26116726 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTTAGTCAACCCATAAAACGA
195 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
* ** * * * *
26116791 GCGTACGGGCGCTCAGTCGGCCGGAGAGGCCGGCCGAAGAGGCATAATGCATAAGCCGGGGATCA
260 GCGTGCGGGCGCTCAACCGACCGGAGAGGCCGGCCG-AGAGGCATAATACACAAGCCGAGGATCA
* * * *
26116856 GCCCGATCCCCCTCTACGTGCTGCCGATCCCCCTGTCGGTCTT
324 ACCCGATCCCCCTCTACGTGCTACCGATCCCCCTGCCGGTCCT
*
26116899 GCT-CCGATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAA
1 GCTGCC-ACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAA
* * * * *
26116963 CCCATAAAACGAACGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGCACAAACCAGGGTTCGA
65 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGA
** * * *
26117028 CCCGGTCCCCCCTATGTGCTGCCGATCCTGCTGCCACAACTCTCGATCCGGTCTGATCTTAGACT
130 CCCGGTCCCCCCTGCGTGCTACCGATCCTGCT-CCACAACCCTCGATCCGGTTTGATCTTAGACT
* *
26117093 GGGAATGAACTCCGTATGCTTAGACT-AGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACA
194 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
*
26117157 AGCGTGCGGGCGCT-AAGCCGACCAGAGAG
259 AGCGTGCGGGCGCTCAA-CCGACCGGAGAG
26117186 ACAGGATACG
Statistics
Matches: 547, Mismatches: 101, Indels: 14
0.83 0.15 0.02
Matches are distributed among these distances:
366 2 0.00
367 298 0.54
368 245 0.45
369 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (366 bp):
GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAAC
CCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCCAGGGATCGAC
CCGGTCCCCCCTGCGTGCTACCGATCCTGCTCCACAACCCTCGATCCGGTTTGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
CGTGCGGGCGCTCAACCGACCGGAGAGGCCGGCCGAGAGGCATAATACACAAGCCGAGGATCAAC
CCGATCCCCCTCTACGTGCTACCGATCCCCCTGCCGGTCCT
Found at i:26117129 original size:25 final size:26
Alignment explanation
Indices: 26117085--26117136 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
26117075 CCGGTCTGAT
*
26117085 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26117111 CTTAGACTAGG-ATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26117136 C
1 C
26117137 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26117845 original size:26 final size:26
Alignment explanation
Indices: 26117816--26117868 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26117806 GGCTCAAAAT
*
26117816 CTTAGAC-TGGGAATGAGCTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
26117842 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
26117868 C
1 C
26117869 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:26118245 original size:159 final size:159
Alignment explanation
Indices: 26117841--26118248 Score: 450
Period size: 159 Copynumber: 2.6 Consensus size: 159
26117831 AGCTCCATAT
* *
26117841 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
26117906 CCGATCGGAGAGGCAGAATGCACAAGTCGAGGATCGACCCGATCCCCCCCTACGTGCTATCGATC
66 CCGGTCGGAAAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCCTACGTGCTACCGATC
* * * * *
26117971 CTACTGCCATAACCCTCGGTCTGCTTCGA
131 CCACTGCCACAACCCTCAGTCCGCTTAGA
* * * * * *
26118000 TCTTAGA-ATGGGAATGAACTCCGTATGCATAAGTCAAACCATGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * * ** *
26118064 GCCAG-CCGAAGAGGCATAATGCGCAAG-CTGGGGATCGGCCCGGTCCCCCTCTGTGTGCTGCCG
65 GCCGGTCGGAA-AGGCAGAATGCGCAAGTC-GAGGATCGACCCGATCCCCCCCTACGTGCTACCG
* *
26118127 GTCCCACTGCCACAACCCTCAGTCCGAC-TAGG
128 ATCCCACTGCCACAACCCTCAGTCCG-CTTAGA
*
26118159 GCTTAGACATGGAATGAGCTCAC-TATGCCTAAGCCAACCCATGAAACTG-GCGTGCGGGCGCTC
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCATGAAAC-GAGCGTGCGGGCGCTC
26118222 AGCCGGTCGGAAAGGCAGAATGCGCAA
64 AGCCGGTCGGAAAGGCAGAATGCGCAA
26118249 CCCTTGATCC
Statistics
Matches: 202, Mismatches: 39, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
158 6 0.03
159 187 0.93
160 9 0.04
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAAAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCCTACGTGCTACCGATC
CCACTGCCACAACCCTCAGTCCGCTTAGA
Found at i:26118296 original size:26 final size:26
Alignment explanation
Indices: 26118267--26118319 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26118257 CCGATTTGAT
* *
26118267 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
* *
26118293 CTTAGAATGGGGATAAACTGCGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
26118319 C
1 C
26118320 CTAAGTAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATAAACTCCGTATG
Found at i:26118687 original size:26 final size:26
Alignment explanation
Indices: 26118636--26118688 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26118626 CCGATCCGAT
* * *
26118636 CTTAGTCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26118662 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
26118688 C
1 C
26118689 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26118848 original size:50 final size:50
Alignment explanation
Indices: 26118771--26118872 Score: 152
Period size: 50 Copynumber: 2.0 Consensus size: 50
26118761 GAATGGGTGG
* * *
26118771 TAGGTGGGTTCAAGCGCATCTTTATATTTCTATCATGCCAATGCCATTTT
1 TAGGTGGGTTCAAGCACATCTTCATATTTCTACCATGCCAATGCCATTTT
*
26118821 TAGGTGGGTTCAAGCACAGTC-TCATATTTCTCCCATGCCAATGCCATTTT
1 TAGGTGGGTTCAAGCACA-TCTTCATATTTCTACCATGCCAATGCCATTTT
26118871 TA
1 TA
26118873 TGGCTTCTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
50 45 0.96
51 2 0.04
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.37
Consensus pattern (50 bp):
TAGGTGGGTTCAAGCACATCTTCATATTTCTACCATGCCAATGCCATTTT
Found at i:26119348 original size:11 final size:11
Alignment explanation
Indices: 26119316--26119348 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
26119306 CAGTTAGGCT
26119316 CTCCGGTGATG
1 CTCCGGTGATG
26119327 CTCCGAG-GATG
1 CTCCG-GTGATG
26119338 CTCCGGTGATG
1 CTCCGGTGATG
26119349 GCACCCTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 1 0.05
11 18 0.90
12 1 0.05
ACGTcount: A:0.12, C:0.27, G:0.36, T:0.24
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:26120484 original size:369 final size:363
Alignment explanation
Indices: 26119716--26120716 Score: 1093
Period size: 369 Copynumber: 2.7 Consensus size: 363
26119706 TGCTACGACT
* *
26119716 ACCCTCGGTCTGGCTGGGGCTTAGACATGGAATG-AGCTCCTTATGCCTAAGCCAACCCATGAAA
1 ACCCTCGGTCTAGCTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCATGAAA
* * * *
26119780 CAGGCGTACGGACGCTCAGTCC-ACCGGAGAGGCAGAATACGCAAGTTGAGGATCGGCCCGGT-C
65 -AAGCGTACGGGCGCTCAG-CCGACCGGAGAGGCAGAATGCGCAAG-CGAGGATCGGCCC-GTCC
* * * * * **
26119843 CCCCTGCGTGCTATCAATCCTGCTGCCGTAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGA
126 CCCCTACGTGCTATCGATCCTGC-GACGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGA
* * * * * *
26119908 ACTCCGTATGCTTAAACTAGGGATGAACTCCTATGCCTAAGTCAACCCACAAAACGAGTGTACGG
190 ACTCCGTATGCTTAGACTGGGGATGAACTCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
** * * * * * * * **
26119973 ATGCTCAACCGATCGAAGAGGTCGATTGAAGAGGTATAATGTGCAAGCCGAGGATCAATTCGATC
255 GCGCTCAGCCGACCGAAGAGGCCGACTGAAGAGGCATAATCTGCAAGCAGAGGATCAACACGATC
* * * * **
26120038 CCCTTCTGCGTGTTGTCGATCCCGCTGCCAGTACTGTTGCCACA
320 CCCCTCTGCGTGCTGCCGATCCCACTGCCAGTACTACTGCCACA
* *
26120082 ACCCTCGGTAC-AGTTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAA
1 ACCCTCGGT-CTAGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAA
* * * * *
26120146 TGAGTGTACGGGCGCTCAGCCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCAGTCCC
65 -AAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCGA-GGATCGGCCC-GT-CC
* * * * *
26120211 CCCCTACGTGCTACCGATCCTGCGATCGCAACCCTCAATCCG-GCTTGATTTTAGCCTGGGAATG
126 CCCCTACGTGCTATCGATCCTGCGA-CGCAACCCTCGATCCGATC-TGATCTTAGACTGGGAATG
* * * *
26120275 AACTCCGTATGCTTAGACTGGGGATGAACTCTGTGTGCCTAAGTCAACCCATGAAATGAGCGTGC
189 AACTCCGTATGCTTAGACTGGGGATGAACTC-ATATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * *
26120340 GGGCGCTCAGTCGACC-AGAGAGGCCGACTGGAGAGGCATAATACT-CAAGCAGGGGATCAGCAC
253 GGGCGCTCAGCCGACCGA-AGAGGCCGACTGAAGAGGCATAAT-CTGCAAGCAGAGGATCAACAC
* * * *
26120403 GGTCCCCCTCTTCGTGCTGCCGATCCCACTGCCAGTCCTACTGGCACA
316 GATCCCCCTCTGCGTGCTGCCGATCCCACTGCCAGTACTACTGCCACA
* * *
26120451 ACCCTCGGTCTAACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCAATGAAAC
1 ACCCTCGGTCTAGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAA-
* * * *
26120516 AAGCGTGCGGGCACTCAGCCGACCGGAGAGGTAGAATGC-TAAGTCGAGGATCGGCCCGATCCCC
65 AAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG-CGAGGATCGGCCCG-TCCCC
* * *
26120580 CCTACGTGCTATCGATCCTGCTAC-CATAACCTCGATCCGATCTGATCTTAGACTAGGAATGAAC
128 CCTACGTGCTATCGATCCTGCGACGCA-ACCCTCGATCCGATCTGATCTTAGACTGGGAATGAAC
* *
26120644 TCCGTATTCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGG
192 TCCGTATGCTTAGACTGGGGATGAACT-CATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
*
26120709 CGTTCAGC
256 CGCTCAGC
26120717 TGAGCAAAGA
Statistics
Matches: 526, Mismatches: 92, Indels: 34
0.81 0.14 0.05
Matches are distributed among these distances:
365 5 0.01
366 195 0.37
367 32 0.06
368 94 0.18
369 199 0.38
370 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (363 bp):
ACCCTCGGTCTAGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAAA
AGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCGAGGATCGGCCCGTCCCCCCT
ACGTGCTATCGATCCTGCGACGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCG
TATGCTTAGACTGGGGATGAACTCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGACCGAAGAGGCCGACTGAAGAGGCATAATCTGCAAGCAGAGGATCAACACGATCCCCCTC
TGCGTGCTGCCGATCCCACTGCCAGTACTACTGCCACA
Found at i:26121383 original size:26 final size:26
Alignment explanation
Indices: 26121354--26121405 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26121344 GCTCAAAATA
*
26121354 TTAGAC-TGGGAATGAGCTCCATATGC
1 TTAGACAT-GGAATGAACTCCATATGC
*
26121380 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCATATGC
26121406 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCATATGC
Found at i:26121771 original size:158 final size:157
Alignment explanation
Indices: 26121378--26121808 Score: 400
Period size: 158 Copynumber: 2.7 Consensus size: 157
26121368 AGCTCCATAT
* * * *
26121378 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGTTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAG
* * * * ** *
26121443 CCGGTCGGAGTGGCAGAATGCACAAGTCAGGGATCGACCCAATCCCCCCTGCATGCTATCAATCC
66 CC-GTCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCATGCTACCAATCC
** * *
26121508 TGCTGCCATAACCCTCGGTCTGCTCTGA
130 CACTGCCACAACCCTCGGTCTGCTCGGA
* * * * * * * *
26121536 TCTTAGA-ATGGGAATAAACTCCGTATGCATAAGTCAACCCATTAAACAAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCA
* * * * * * *
26121600 GCCGACCAAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGT-CCCCCTCGCGTGTTGCCAGT
65 GCCG-TCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCT-GCATGCTACCAAT
* *
26121664 CCCACTGCCACAACCCTCGGTTTGGCT-GGG
128 CCCACTGCCACAACCCTCGGTCT-GCTCGGA
* * * * *
26121694 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAG
* * * * * *
26121759 CCAGTCAGAGAGGTAGAATGCGTAAGCCGAGGATCGGCTCGGTCCCCCCT
66 CC-GTCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCT
26121809 ACGTGCTGTC
Statistics
Matches: 214, Mismatches: 52, Indels: 13
0.77 0.19 0.05
Matches are distributed among these distances:
157 9 0.04
158 193 0.90
159 12 0.06
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAG
CCGTCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCATGCTACCAATCCC
ACTGCCACAACCCTCGGTCTGCTCGGA
Found at i:26122562 original size:26 final size:26
Alignment explanation
Indices: 26122533--26122585 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26122523 CCGATCCGAT
*
26122533 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
26122559 CTTAGACTGGGGACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
26122585 C
1 C
26122586 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:26122630 original size:313 final size:313
Alignment explanation
Indices: 26122057--26122636 Score: 854
Period size: 313 Copynumber: 1.9 Consensus size: 313
26122047 TCGGTTCGAA
* * *
26122057 TGGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGC
1 TGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGC
** * * * * *
26122122 TCATTCGGTTGAAGAGGTAGAATGCGTAAGCCGGGGATCAGCCCAGTCCCCCCTACGTGCTGTCG
66 TCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCAGTCCCCCCTACGTGCTGTCG
* * * *
26122187 ATCCTACTGCTGCAACCCTCGATCCGATCAGATCTTATATTGGGAATGAACTCCGTATGCTTAGA
131 ATCCTACTACCGCAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * *
26122252 CTGGGGATGAATTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCG
196 CTGGGGACGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTACGAGCACTCAGCCGACCG
26122317 GAGAGGCATAATGCACAAGTCGAAGATCAGCCTGGTCCCCCCTACCGTCCAGC
261 GAGAGGCATAATGCACAAGTCGAAGATCAGCCTGGTCCCCCCTACCGTCCAGC
* *
26122370 TGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGCGC
1 TGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGC
* * * * *
26122435 TCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCTCGGTCCCTCCTGCGTGCTGTCG
66 TCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCAGTCCCCCCTACGTGCTGTCG
** * *
26122500 ATGTTACTACCGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
131 ATCCTACTACCGCAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * **
26122565 CTGGGGACGAACTCCGTATGCCTAAGTCAACACATGAAACGAGCGTGCGAGCACTCATTCGACCG
196 CTGGGGACGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTACGAGCACTCAGCCGACCG
26122630 GAGAGGC
261 GAGAGGC
26122637 CGGCTGGAGA
Statistics
Matches: 233, Mismatches: 34, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
313 233 1.00
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (313 bp):
TGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGC
TCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCAGTCCCCCCTACGTGCTGTCG
ATCCTACTACCGCAACCCTCGATCCGATCAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
CTGGGGACGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTACGAGCACTCAGCCGACCG
GAGAGGCATAATGCACAAGTCGAAGATCAGCCTGGTCCCCCCTACCGTCCAGC
Found at i:26122952 original size:26 final size:26
Alignment explanation
Indices: 26122901--26122953 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26122891 CCGGTTTGAT
**
26122901 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26122927 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
26122953 C
1 C
26122954 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26124487 original size:355 final size:351
Alignment explanation
Indices: 26123922--26124951 Score: 1029
Period size: 368 Copynumber: 2.9 Consensus size: 351
26123912 GGTCTCGCTG
* * * * * * *
26123922 CCACAACCCTCGGTCCAGCTATTGGCCTAGACATGGAATGA-GCTCCCTATGCCTAAGCCAACCC
1 CCACAACCCTTGATCCAGCTA-GGGCTTAGACGTGGAAT-ATACTCCATATGCCTAAGCCAACCC
* * * *
26123986 ATGAAACGGGCGTGCGAGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGCCGGAGTCGGCTCG
64 ATGAAACGAGCGTGCGGGCGCTCAGC-GGTCGGAGAGGCAGAATGCGCAAGCGGGA-TCAGCTCG
* * * * * *
26124051 GTCCCCCCTTTGTGCTACCGATCCTGCTATTGCAAGCCTC-AGTTCGATCCGATCTTAGA-TCGG
127 GTCCCCCCTATGTGCTATCGATCCTGCTATCGCAACCCTCGA-TTCGGTTCGATCTTAGACT-GG
*
26124114 GAATGAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
190 GAATGAACTTCATATGCTTAGACTAGGGATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAG
* *
26124179 TGTACGGGCACTCAACCGGCCGAAGAGGCATAATGCGCAAACCGGGGATCAGCCCTG-TCCCCCT
254 TGTACGGGCACTCAACCGGCCGAAGAGGCATAATGCGTAAGCCGGGGATCAG-CCTGATCCCCCT
*
26124243 AC-GCATGCTGCCGATCCCACTGTCGGTCCTGCCA
318 -CTGCATGCTGCCGATCCCACTGTCGGTCCTACCA
* * * * *
26124277 CCACAACCC-TCATTTC-GATTGGGGGTTAGACGTGGAATATACTCCATATGCCTAAGCCAACCC
1 CCACAACCCTTGA-TCCAG-CTAGGGCTTAGACGTGGAATATACTCCATATGCCTAAGCCAACCC
* * *
26124340 ACGAAACGAGCATGCGGGCGCTCAGTCGG-CTGGAGAGGCAGAATGCGTAAGTCAGGGATCAGCT
64 ATGAAACGAGCGTGCGGGCGCTCAG-CGGTC-GGAGAGGCAGAATGCGCAAG-C-GGGATCAGCT
* * *
26124404 CGGTCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCGATCCGGTTCGATCTTAGACTGG
125 CGGTCCCCCCTATGTGCTATCGATCCTGCTATCGCAACCCTCGATTCGGTTCGATCTTAGACTGG
* * * * *
26124469 GAATGAACTTCATATGCTTAGGCTAGGGATGAACTTCGTACGCCGAAGTCAACCCATGAAATGAG
190 GAATGAACTTCATATGCTTAGACTAGGGATGAAC-TCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * *
26124534 TGTGCGAGTGCTCAGTCGACTGGGGAGGCTGGTCGGAA-AGGCATAATGCGTAAGTCGAGGATCA
254 TGTACG-G-G--CACTC-A------A--CCGG-CCGAAGAGGCATAATGCGTAAGCCGGGGATCA
* * *
26124598 GCCTGATCCCCCTCTGCATGCTGTCGATCCCGCTGTCGGTCCTACTA
305 GCCTGATCCCCCTCTGCATGCTGCCGATCCCACTGTCGGTCCTACCA
* * **
26124645 CCACAACCCTTGATCCAGCTAGGGCTTAGATGTGGAATGTACTCCATATGCCTAAGCCAACAAAT
1 CCACAACCCTTGATCCAGCTAGGGCTTAGACGTGGAATATACTCCATATGCCTAAGCCAACCCAT
* * * * *
26124710 GAAACGAGCGTGCGGGCACTCAGCCGGTCAGAGAGGTAGAATGCGCAAACCGAGGATCAGCCCGG
66 GAAACGAGCGTGCGGGCGCTCAG-CGGTCGGAGAGGCAGAATGCGC-AAGCG-GGATCAGCTCGG
* * * * *
26124775 TCCCCCCTATGTGCTATTGATCCTGCTGTCGTAGCCCTCGATTCGG-TCTGATCTTAGACTAGGA
128 TCCCCCCTATGTGCTATCGATCCTGCTATCGCAACCCTCGATTCGGTTC-GATCTTAGACTGGGA
* * *
26124839 ATGAAC-TCTATATGCTTAGACTGGGGATGAACATCGTATGCCTAAGTCAACCCACGAAACAAGC
192 ATGAACTTC-ATATGCTTAGACTAGGGATGAAC-TCGTATGCCTAAGTCAACCCACGAAACGAGT
* * * * * **
26124903 GTCCGGGCGCTCAGCCGACCAAAGAGGCAGGATGCGTAAGCCGGGGATC
255 GTACGGGCACTCAACCGGCCGAAGAGGCATAATGCGTAAGCCGGGGATC
26124952 GAACGGGTGG
Statistics
Matches: 548, Mismatches: 93, Indels: 68
0.77 0.13 0.10
Matches are distributed among these distances:
353 2 0.00
354 80 0.15
355 156 0.28
356 7 0.01
357 1 0.00
359 4 0.01
360 1 0.00
363 1 0.00
364 3 0.01
366 2 0.00
367 11 0.02
368 270 0.49
369 10 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (351 bp):
CCACAACCCTTGATCCAGCTAGGGCTTAGACGTGGAATATACTCCATATGCCTAAGCCAACCCAT
GAAACGAGCGTGCGGGCGCTCAGCGGTCGGAGAGGCAGAATGCGCAAGCGGGATCAGCTCGGTCC
CCCCTATGTGCTATCGATCCTGCTATCGCAACCCTCGATTCGGTTCGATCTTAGACTGGGAATGA
ACTTCATATGCTTAGACTAGGGATGAACTCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGG
GCACTCAACCGGCCGAAGAGGCATAATGCGTAAGCCGGGGATCAGCCTGATCCCCCTCTGCATGC
TGCCGATCCCACTGTCGGTCCTACCA
Found at i:26126679 original size:26 final size:26
Alignment explanation
Indices: 26126638--26126689 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
26126628 CTGACCTGAT
*
26126638 CTTAGACTGGAAATGAGCTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
26126664 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
26126690 GCTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Done.