Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 270 of 402
Found at i:26127023 original size:26 final size:26
Alignment explanation
Indices: 26126994--26127046 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26126984 CCGATCTTAT
26126994 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26127020 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26127046 C
1 C
26127047 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26127379 original size:26 final size:26
Alignment explanation
Indices: 26127350--26127402 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26127340 CCGATCCGAT
26127350 CTTAGACTGGG-ATTGAACTCCGTATG
1 CTTAGACTGGGTA-TGAACTCCGTATG
26127376 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGTATGAACTCCGTATG
26127402 C
1 C
26127403 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGTATGAACTCCGTATG
Found at i:26127430 original size:356 final size:355
Alignment explanation
Indices: 26126407--26127453 Score: 1266
Period size: 356 Copynumber: 2.9 Consensus size: 355
26126397 GTCATAGTGC
* * *
26126407 GCAAGCCAGGGATCGGCCCGATCCCCCTCTGTGTGCTGT-CGAT-TTCACTGCCACAACCCTCAG
1 GCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCT-TCCGATCTT-GCTGCCACAACCCTCAG
* * *
26126470 TTCGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTG
64 TTCGACTGGGGCTTTGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG
* * *
26126534 CAGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCTAGGATCAGCTCGGTCCCCCCTGCGTG
128 CGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCAGGATCGGCTCGGTCCCCCCTGCGTG
* * * * * *
26126599 CTGCCGATCCTGTTGCCGCAACCTTCGGTCTGA-CCTGATCTTAGACTGGAAATGAGCTCCATAT
193 CTGCCGATCCTGTTGCCGCAACCCTCGATCCGATCC-GATCTTAGACTGGGAATGAACTCCGTAT
* ***
26126663 GCTTAGACTGGGGATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCGTGTAAGCGCTCAG
257 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-CTCAG
* * *
26126728 -CAGATCGGAGAGG-CCACTCGAAGAGGCATAATGC
321 TC-GACCAGAGAGGTCCACTCGAAGAGGCATAATGA
* * * * * *
26126762 GCAAGCTAGGGATCAGCCCTATCCCCCTCTGCGTGCTACCGATCCTGCTACCACAACCCTCGGTT
1 GCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTTCCGATCTTGCTGCCACAACCCTCAGTT
* * * * * * * * *
26126827 TGGCTAGGG-TTTAGACGTGGAATGTACTCTGTATGCCTGAGCCAGCCCACGAAACAAGGGTGCG
66 CGACTGGGGCTTT-GACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
* * * * *
26126891 GGTGCTCAGCCGACCGAAGAGGCAGAATGCATAAGCCAGGGATCGGCTTGGTCCCCCCTGCGTGC
130 GGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCA-GGATCGGCTCGGTCCCCCCTGCGTGC
* * * **
26126956 TGTCAATCCTGCTGCCGCAACCCTCGATCCGATCTTATCTTAGACTGGGAATGAACTCCGTATGC
194 TGCCGATCCTGTTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
* *
26127021 TTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCCTTCAGTC
259 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCC-TCAGTC
** *
26127086 GACCAGAGAGGTCGGCT-GGAGAGGCATAATGA
323 GACCAGAGAGGTCCACTCGAAGAGGCATAATGA
* * * *
26127118 GCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTTCCGATCTTGCTGCCACAACCCTCTGTC
1 GCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTTCCGATCTTGCTGCCACAACCCTCAGTT
* * *
26127183 CGACTGGGGCTTTGACATGGAATGTACTCCGTATGCCTAAGCCAACCAATGAAATGAGCGTGCGG
66 CGACTGGGGCTTTGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG
* * * * * *
26127248 GCGCTCAGCCGGTCGGAGAGGCAGAATGGGCAAGCCGAAGATTGG-TCCGATCCCCCCTGCGTGC
131 GCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCC-AGGATCGGCT-CGGTCCCCCCTGCGTGC
* * * *
26127312 TACCGATCCTGTTGCTGTAACCCTCGATCCGATCCGATCTTAGACTGGGATTGAACTCCGTATGC
194 TGCCGATCCTGTTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
26127377 TTAGACTGGGTATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGTGCTCAGTC
259 TTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-CCTCAGTC
*
26127442 GACGAGAGAGGT
323 GACCAGAGAGGT
26127454 AGGATGCGCA
Statistics
Matches: 580, Mismatches: 99, Indels: 25
0.82 0.14 0.04
Matches are distributed among these distances:
354 2 0.00
355 134 0.23
356 434 0.75
357 10 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (355 bp):
GCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTTCCGATCTTGCTGCCACAACCCTCAGTT
CGACTGGGGCTTTGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG
GCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCAGGATCGGCTCGGTCCCCCCTGCGTGCTG
CCGATCCTGTTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCCTCAGTCGAC
CAGAGAGGTCCACTCGAAGAGGCATAATGA
Found at i:26128926 original size:26 final size:26
Alignment explanation
Indices: 26128890--26128945 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
26128880 CTAGTCTGAT
26128890 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26128916 CTTAGACTGGGGATGAACTCCGTATT
1 CTTAGACTGGGAATGAACTCCGTATG
26128942 CTTA
1 CTTA
26128946 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26130505 original size:26 final size:26
Alignment explanation
Indices: 26130469--26130521 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26130459 CCGATCTGAT
*
26130469 CTTAGATTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
26130495 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
26130521 C
1 C
26130522 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:26130650 original size:368 final size:368
Alignment explanation
Indices: 26129952--26130931 Score: 1249
Period size: 368 Copynumber: 2.7 Consensus size: 368
26129942 GTCCAGCTCA
* * * *
26129952 GGAATG-AGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACAGGCGCTCAGCCAGTCGGA
1 GGAATGTA-CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGTCGGA
* * ** **
26130016 GAGGCAGAATGCGCAAGCCGGGGATTGGCCAAGT-CTCCCATACGTGCTACCGATCCTGCTGCCA
65 GAGGCAGAATGCGCAAGTCGGGGATTGGCCCAGTCCTCCC-TACGTGCTGTCGATCCTGCTGCTG
* * *
26130080 CAACCCTCGGTCCGGTCCGATCTTAGAATAGGAATGAACTTCGTATGCTTAGACTGGGGATGAAC
129 CAACCCTCGATCCGATCCGATCTTAGAATGGGAATGAACTTCGTATGCTTAGACTGGGGATGAAC
* **
26130145 T-TCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCCGGT
194 TCT-GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCCGGT
* * * * **
26130209 CAGAGAGGCATAATGCGCAAGTCGGAGATTAGCCTGGTCCCCCTCTACGTGCTGTCGATCCCGTT
258 CAGAGAGGCATAATGCGCAAGCCGGAGATCAGCCTGATCCCCCTCTACGTGCTATCGATCCCACT
* *
26130274 GCCGGTCCTACTACCATAACCCTCAGTCCGACTGGGGCTTAGACGT
323 GCCGGTCCTACTACCACAACCCTCAATCCGACTGGGGCTTAGACGT
* *
26130320 GGAATGTACTCCGTATGCCTAAGCCAACTCACGAAACGAGCGTGCAGGCGCTCAGTCGGTCGGAG
1 GGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGTCGGAG
* * *
26130385 AGGCAGAATGCGCAAGTCGGGGATTGACCCAGTCCTCCCTATGTGCTGTCGATCCTGTTGCTGCA
66 AGGCAGAATGCGCAAGTCGGGGATTGGCCCAGTCCTCCCTACGTGCTGTCGATCCTGCTGCTGCA
* *
26130450 ACCCTCGATCCGATCTGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTC
131 ACCCTCGATCCGATCCGATCTTAGAATGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTC
* *
26130515 TGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCTGGTC-G
196 TGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCCGGTCAG
* * * *
26130579 AAGAGGCATAATGTGCAAGCCGGGGATCAGCCTGATCCCCCTCTATGTGCTATCGATCCCACTGT
261 -AGAGGCATAATGCGCAAGCCGGAGATCAGCCTGATCCCCCTCTACGTGCTATCGATCCCACTGC
* **
26130644 CGGTCCTACTGCCACAACCCTCAATCCGGTTGGGGCTTAGACGT
325 CGGTCCTACTACCACAACCCTCAATCCGACTGGGGCTTAGACGT
* * ** * * * *
26130688 GAAATGTACTCCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGGGTGCTCAGCCGGCCAGAG
1 GGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGTCGGAG
* * * * * * *
26130753 AGGCA-AATGCGTAAGTCGAGGATCGGCTC-GATCCCCCCTGCGTGCTGTCGATCCTGCTACTGC
66 AGGCAGAATGCGCAAGTCGGGGATTGGCCCAG-TCCTCCCTACGTGCTGTCGATCCTGCTGCTGC
* * *
26130816 AACCCTCGATCC-AGTCCGATCTTAGACTGGGAATGAAC-TCTGCATGCTTAGATCAGGGG-TGA
130 AACCCTCGATCCGA-TCCGATCTTAGAATGGGAATGAACTTC-GTATGCTTAGA-CTGGGGATGA
* * * ** *
26130878 ACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTATGGGCGCTTAGCCGACC
192 ACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACC
26130932 AGCGAGGCAG
Statistics
Matches: 533, Mismatches: 71, Indels: 17
0.86 0.11 0.03
Matches are distributed among these distances:
366 4 0.01
367 141 0.26
368 381 0.71
369 7 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (368 bp):
GGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGTCGGAG
AGGCAGAATGCGCAAGTCGGGGATTGGCCCAGTCCTCCCTACGTGCTGTCGATCCTGCTGCTGCA
ACCCTCGATCCGATCCGATCTTAGAATGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTC
TGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCCGGTCAG
AGAGGCATAATGCGCAAGCCGGAGATCAGCCTGATCCCCCTCTACGTGCTATCGATCCCACTGCC
GGTCCTACTACCACAACCCTCAATCCGACTGGGGCTTAGACGT
Found at i:26131959 original size:158 final size:158
Alignment explanation
Indices: 26131584--26132084 Score: 502
Period size: 158 Copynumber: 3.2 Consensus size: 158
26131574 AGCTCCATAT
* * * *
26131584 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * *
26131649 CCGGTC-AGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCC-CTACATGCTGTCGAT
66 CCGGTCGA-AGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCTGCCGAT
* * *
26131712 CTGCTGCCACAACCCTCGGTCTGGTCTGA
130 CCGCTGCCACAACCCTCGATCCGGTCTGA
** * * * * *
26131741 TTTTAGAC-TGGGAATGAACTCCATATGCATACG-TCAACCAACGAAATGAGCGTGCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCT-AACCCATGAAATGAGCGTGCGGGCGCTC
* * *
26131804 AGCCGGTCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGG
64 AGCCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCTGCCGA
*
26131869 TCCGCTGCCACAACCCTCGATCCGGT-TGGG
129 TCCGCTGCCACAACCCTCGATCCGGTCT-GA
* * * * *
26131899 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCTTACCCATGAAATGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * *
26131964 CCGG-CTGAAGAGGTAGAATGCACAAGCCGAGGATC-AGCTCGGTCCCCCT-TACGTGCTGTCAA
66 CCGGTC-GAAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGGTCCCCCTCTACGTGCTGCCGA
* * * *
26132026 TCCTGCTGTCGCAACCCTC-AGTCTGGTTTGA
129 TCC-GCTGCCACAACCCTCGA-TCCGGTCTGA
*
26132057 TG-TTAGAC-TGGAAATGAACTCCGTATGC
1 -GCTTAGACATGG-AATGAACTCCATATGC
26132085 TTAGACTGGG
Statistics
Matches: 282, Mismatches: 48, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
156 1 0.00
157 113 0.40
158 164 0.58
159 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCTGCCGATC
CGCTGCCACAACCCTCGATCCGGTCTGA
Found at i:26132099 original size:26 final size:26
Alignment explanation
Indices: 26132059--26132110 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
26132049 TGGTTTGATG
26132059 TTAGACTGGAAATGAACTCCGTATGC
1 TTAGACTGGAAATGAACTCCGTATGC
**
26132085 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGAAATGAACTCCGTATGC
26132111 CGAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCCGTATGC
Found at i:26133212 original size:26 final size:26
Alignment explanation
Indices: 26133183--26133235 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26133173 CCAGTCCGAT
*
26133183 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
26133209 CTTAGACTGGGGGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26133235 C
1 C
26133236 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26134433 original size:158 final size:158
Alignment explanation
Indices: 26133932--26134433 Score: 461
Period size: 158 Copynumber: 3.2 Consensus size: 158
26133922 GCTCCGTATG
* *
26133932 CTTAGACATGGAATGAAATCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * ** * * *
26133997 CGGCTGGACAGGCAGAATGCGCAAACCGGGGACCGACCCGGTCCTCCCTTGCGTGCTGTCGATCT
66 CGACCGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCCGGTCC-CCCCTGCGTGCTGTCGATCC
* ** * *
26134062 TGCTGCCACAACCCTCAATCCGGTCCGAT
130 AGCTGCCACAACCCTCGGTCCAGTACGAT
* * * ** * * * * * *
26134091 CTTAGAC-TAGGAATTAACTCTGTACGGATAAGTCAACCCATGAAACAAGTGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
26134155 CCGACCGAAGAGGCATAATGTGCGAGTCGGGGATCAACCCGATCCCCCCTGCGTGCTG-CTGGTC
65 CCGACCGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTC-GATC
* * * **
26134219 CCGCTGCCATAACCCTCGGTCCAGTAGGGG
129 CAGCTGCCACAACCCTCGGTCCAGTACGAT
* * * * * *
26134249 ATTAGACATGGAATGAGCCCCCTATGCCTAAGCCAACACACGAAACGGGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * *
26134314 CGATCGGAGAGGTAGAATGTGCAAGTCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCCA
66 CGACCGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCA
* * * * *
26134379 GCTACCGCAACTCTCGGTCCAATATGAT
131 GCTGCCACAACCCTCGGTCCAGTACGAT
*
26134407 CTTAGAC-TCGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
26134434 TTAGACTGGG
Statistics
Matches: 261, Mismatches: 77, Indels: 11
0.75 0.22 0.03
Matches are distributed among these distances:
157 2 0.01
158 175 0.67
159 84 0.32
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGACCGGAGAGGCAGAATGTGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCA
GCTGCCACAACCCTCGGTCCAGTACGAT
Found at i:26134451 original size:25 final size:26
Alignment explanation
Indices: 26134407--26134458 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
26134397 CCAATATGAT
26134407 CTTAGACTCGGAATGAACTCCATATG
1 CTTAGACTCGGAATGAACTCCATATG
* *
26134433 CTTAGACT-GGGATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCATATG
26134458 C
1 C
26134459 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCATATG
Found at i:26136285 original size:353 final size:353
Alignment explanation
Indices: 26135631--26137482 Score: 2015
Period size: 353 Copynumber: 5.3 Consensus size: 353
26135621 CCGGTCTGAT
* * * ** * * * *
26135631 CTTAGACT-GGGAATAAACTTCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGCACTGAG
1 CTTAGACTAGGG-ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * **
26135695 CCGGCCGAAGAGGCATAATACGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCC-A--
65 CCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCCGATC
* ** * *
26135757 ---AT--C--T-C-GCTACCACAACCCTC-AGTTTGGCTGGGGCTTAGACATGGAATGAGCTCCC
130 CCGCTGCCGATCCTGCTACCACAACCCTCGA-TCCGACTGGGGCTTAGACATGGAAT-A-CTCCA
* * * * * *
26135812 TATGCCTAAGCCAACCCACGAAA-CAGGCGTGCGAGCACTCAGCTGGTTGGAGAGGTAGAATGTG
192 TATGCCTAAGCCAACCCACGAAATGA-GCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCG
* * * * * * * * *
26135876 CAAGTCAGGGATTGGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGTTGCTGCAACCCTCGGTCCG
256 CAAGCCAGGGATCGGCCCGATCCCCCTTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCG
* * *
26135941 GACCGATCTTAGACTGGGAATGAACTCCATATG
321 GTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
26135974 CTTAGACTAGGGATGAAGTCTGTACGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAAC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * **
26136039 CGGCTGGAGAGGCATAATGCGTAAGTCGGGGATCAACTTGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCCGATCC
*
26136104 CGCTGCC-AGTCCTGCTACCACAACCCTCGATCCGACTGGGTCTTAGACATGGAATACTCCATAT
131 CGCTGCCGA-TCCTGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATACTCCATAT
* * * * * * *
26136168 GCCTAAGCCAAACCACGAAATGAGCGTGAGGGTGCTCAGCTGGCCAGATAGGCAGAATGCACAAG
195 GCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAG
* * * * * *
26136233 CCAGGGATCGGCTCGATCCCCCTTACGTGCTATCGATCCTGCTACCGCAACCCTCAATCCGATCC
260 CCAGGGATCGGCCCGATCCCCCTTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCT
* * *
26136298 AATTTTAGACTGGGAATGAACTCTGTATG
325 GATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
26136327 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGC-GACGCTCAAT
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * * *
26136391 CGGCCGGAGAGGCATAATGCACAAGCCGGGGATCAACCCGATCCCTCTCTACGTGCTGTCGATCC
66 CGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCCGATCC
* *
26136456 CGCTGCCGATCCTGCTGCCACAACCCTCGATAC-AGCTGGGGCTTAGACATGGAATACTCCATAT
131 CGCTGCCGATCCTGCTACCACAACCCTCGATCCGA-CTGGGGCTTAGACATGGAATACTCCATAT
* * * * *
26136520 GCCTAAGCCAATCCACGAAATGAGCATGCGGGCGCTCAGCGGGCCGGAGAGGCAGAATGCGTAAG
195 GCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAG
* * **
26136585 CC-GAAGA-CTGGCCCGATCCCCCTTGCGTGCTGTCGAT-CTGCAACCGCAACCCTCGATCCGGT
260 CCAG-GGATC-GGCCCGATCCCCCTTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGT
* *
26136647 CTGATCTTAAACTGGAAATGAACTCCGTATG
323 CTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
26136678 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTGCAGGCGCTCAAC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * ** *
26136743 CGGCCGGAGAGGCATAATACGCAAGCCGGGGTTCAACCCGGTCCCTATCTGCGTGCTGTCGATCC
66 CGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
26136808 CGCTACCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTTGACATGGAATACTCCGTATG
131 CGCTGCCGATCCTGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATACTCCATATG
* * * * * * *
26136873 CCTAAGCCAACCCATGAAACGGGCATACGGGCGCTCAG-TCGGTCAGAGAGGCAGAATGAGCAAG
196 CCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCT-GGTCGGAGAGGCAGAATGCGCAAG
* * * * * * **
26136937 CCGGGGATTGGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTGCCGTAACCCTC-AGTTTGGTC
260 CCAGGGATCGGCCCGATCCCCCTTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGA-TCCGGTC
26137001 TGATCTTAGACTGGGAATGAACTCCGTATG
324 TGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
26137031 CTTAGACTAGTGATGAACTCTGTATGCCTAAATCAACCCATGAAATGAGCGTGCGGGCGCTCAAC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * * * *
26137096 CGACCGGAGAGGCATAATGCGTAAGTCGGGGATCAATCCGGTCCCCCTCTGCGTGCTACCGATCT
66 CGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
26137161 CGCTGTCGATCCTGCTACTACAACCCTC-AGTCTGGCTGAGGCTTAGACATGGAATACTCCGTAT
131 CGCTGCCGATCCTGCTACCACAACCCTCGA-TCCGACTGGGGCTTAGACATGGAATACTCCATAT
* * * * *
26137225 GCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTTAGCCGATCGGAGAGGCAGAATGCGTAAG
195 GCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAG
* * * * * * *
26137290 CCAAGGATCAGCCCGATCCCCCTTACGTGCTGTTGATCCTGCTGCCACAACCATCGATTCAGTCT
260 CCAGGGATCGGCCCGATCCCCCTTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCT
26137355 GATCTTAGACTGGGAATGAACTCCGTATG
325 GATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
26137384 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCTGACGCTCAGC
1 CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * ** *
26137449 CGACCAGAGAGGCAGGATACGCAAGCCGGGGATC
66 CGGCCGGAGAGGCATAATGCGCAAGCCGGGGATC
26137483 GAATGGCTGG
Statistics
Matches: 1261, Mismatches: 219, Indels: 48
0.83 0.14 0.03
Matches are distributed among these distances:
343 97 0.08
344 4 0.00
349 1 0.00
351 102 0.08
352 410 0.33
353 606 0.48
354 4 0.00
355 36 0.03
356 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (353 bp):
CTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
CGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGCCGATCC
CGCTGCCGATCCTGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATACTCCATATG
CCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGGTCGGAGAGGCAGAATGCGCAAGC
CAGGGATCGGCCCGATCCCCCTTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCTG
ATCTTAGACTGGGAATGAACTCCGTATG
Found at i:26136342 original size:26 final size:26
Alignment explanation
Indices: 26136302--26136353 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26136292 CGATCCAATT
*
26136302 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
26136328 TTAGATTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
26136354 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:26136681 original size:26 final size:26
Alignment explanation
Indices: 26136652--26136704 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26136642 CCGGTCTGAT
26136652 CTTAAACTGGAAATGAACTCCGTATG
1 CTTAAACTGGAAATGAACTCCGTATG
* **
26136678 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGAAATGAACTCCGTATG
26136704 C
1 C
26136705 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGAAATGAACTCCGTATG
Found at i:26137399 original size:26 final size:26
Alignment explanation
Indices: 26137358--26137410 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26137348 TCAGTCTGAT
26137358 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26137384 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
26137410 C
1 C
26137411 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26138110 original size:26 final size:26
Alignment explanation
Indices: 26138081--26138133 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26138071 GGCTCAAAAT
*
26138081 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
26138107 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26138133 C
1 C
26138134 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26138481 original size:159 final size:158
Alignment explanation
Indices: 26138106--26138542 Score: 405
Period size: 159 Copynumber: 2.8 Consensus size: 158
26138096 AGCTCCGTAT
* * * * *
26138106 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAACGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * ** *
26138171 CCGGCCAGAGAGGCAAAATGCGCAAATCGGGGATCGACTCGATCCCCCCTACGTGCTGTCGATTC
66 CCGACCAGAGAGGCAAAATGCGCAAACCGGGGATCGACCCGATCCCCCCTACATGCTACCGATCC
* * *
26138236 TGCTGCCATAACCCTCTGTCCGGTCCGA
131 GGCTGCCACAACCCTCAGTCCGGTCCGA
* * ** * * * *
26138264 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAATCAACCCACGAAACAAGCGTACGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * *
26138328 GCTGACC-GAAGAGGCATAATGCGCAAGCCGGGGATC-AGCCCGATCCCCCTCTACATGCTACCG
65 GCCGACCAG-AGAGGCAAAATGCGCAAACCGGGGATCGA-CCCGATCCCCC-CTACATGCTACCG
* * *
26138391 ATCCGGCTGCCACAACCCTCAGTTCGG-CTGGG
127 ATCCGGCTGCCACAACCCTCAGTCCGGTC-CGA
* * * * *
26138423 GCTTAGCCATGGAATGACCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* ** * * * * * * *
26138488 TCGGTCAGAGACGCAGAATGCGCAACCCGAGGATCGGCCCGGTCCCCCCTGCATG
66 CCGACCAGAGAGGCAAAATGCGCAAACCGGGGATCGACCCGATCCCCCCTACATG
26138543 TTGTCGATCC
Statistics
Matches: 218, Mismatches: 53, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 95 0.44
159 118 0.54
160 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGACCAGAGAGGCAAAATGCGCAAACCGGGGATCGACCCGATCCCCCCTACATGCTACCGATCC
GGCTGCCACAACCCTCAGTCCGGTCCGA
Found at i:26138632 original size:26 final size:26
Alignment explanation
Indices: 26138582--26138634 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26138572 CTAGTTCGAT
**
26138582 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26138608 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26138634 C
1 C
26138635 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26139528 original size:26 final size:26
Alignment explanation
Indices: 26139487--26139539 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26139477 CTGGTCTGAT
*
26139487 CTTAGACTAGGAATGAGCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
26139513 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26139539 C
1 C
26139540 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26140133 original size:11 final size:11
Alignment explanation
Indices: 26140117--26140143 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
26140107 CGGTTAGGCT
26140117 CTCCGGTGATG
1 CTCCGGTGATG
26140128 CTCCGGTGATG
1 CTCCGGTGATG
26140139 CTCCG
1 CTCCG
26140144 ACGATGGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.33, G:0.33, T:0.26
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:26140704 original size:26 final size:26
Alignment explanation
Indices: 26140675--26140727 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26140665 CTGGTCCGAT
26140675 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26140701 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26140727 C
1 C
26140728 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26141778 original size:159 final size:158
Alignment explanation
Indices: 26141425--26141850 Score: 399
Period size: 159 Copynumber: 2.7 Consensus size: 158
26141415 TCCGTATGCC
* * * * * **
26141425 TAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTTAGCTG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGCCA
* * *** **
26141490 GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCTGTCCCCCCTGTGTGCTGTCAATCTTGC
66 GCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACATGCTGTCAATCACGC
*
26141555 TACCACAACCCTCGGTCCGGTCCGATCT
131 TACCACAACCCTCGGTCCGGTCCGAGCT
* *
26141583 TAGAC-TGGCAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGCC
1 TAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGCC
** * * * * * **
26141647 AGTTGAAGAGGCATAATGTGCAAGTCGGGGATCGGCTCGGTCCCCCTCTACATGCTGTCGGTCAC
65 AGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTACATGCTGTCAATCAC
* * *
26141712 GCTGCCACAACCCTCGGTCCGG-CTGGGGCT
129 GCTACCACAACCCTCGGTCCGGTC-CGAGCT
* * * ** * * *
26141742 TAGTCATGGAATGAGCTCCCTATGCCTAAGCCAACCCAC-AAAAAAGTCGTGCGGGAGCTCAGCC
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTACGGGCGCTGAGCC
* * * * * * *
26141806 GGTCGGAGAGGCAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCC
65 AGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCC
26141851 TCTGCGTGCT
Statistics
Matches: 214, Mismatches: 49, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
157 3 0.01
158 94 0.44
159 114 0.53
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGCCA
GCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACATGCTGTCAATCACGC
TACCACAACCCTCGGTCCGGTCCGAGCT
Found at i:26141911 original size:158 final size:156
Alignment explanation
Indices: 26141425--26141923 Score: 478
Period size: 158 Copynumber: 3.1 Consensus size: 156
26141415 TCCGTATGCC
* * * * *
26141425 TAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTTAGCTG
1 TAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCA-CAAAAGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
26141490 GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCTGTCCCCCCTGTGTGCTGTCAATCTTGC
64 GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCCTGC
* *
26141555 TACCACAACCCTCGGTCCGGTCCGATCT
129 TGCCACAACCCTCGGTCCGGTTCGATCT
* * * * * * *
26141583 TAGACTGGCAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAGCCA
1 TAGAATGG-AATGAACTCCGTATGCCTAAGCCAACCCAC-AAAAGAGCGTGCGGGCGCTCAGCCG
* * * * * * * * *
26141648 GTTGAAGAGGCATAATGTGCAAGTCGGGGATCGGCTCGGTCCCCCTCTACATGCTGTCGGTCAC-
64 GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCTCTGCGTGCTGTCGATC-CT
* * **
26141712 GCTGCCACAACCCTCGGTCCGGCTGGGGCT
127 GCTGCCACAACCCTCGGTCCGGTTCGATCT
* * * * *
26141742 TAGTCATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAAAAGTCGTGCGGGAGCTCAGCCG
1 TAG-AATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAGAG-CGTGCGGGCGCTCAGCCG
* * * *
26141807 GTCGGAGAGGCAGAATGCGTAAGCCAGGGATTGGCCCGGTCCCCTCTGCGTGCTGTCGATCCTAC
64 GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCCTGC
** * *
26141872 TGCTGCAACCTTCGGTCCGGTTTGATCT
129 TGCCACAACCCTCGGTCCGGTTCGATCT
*
26141900 TAGAATAGGAATGAACTCTGTATG
1 TAGAAT-GGAATGAACTCCGTATG
26141924 GTTAGACTGC
Statistics
Matches: 265, Mismatches: 68, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 6 0.02
158 143 0.54
159 113 0.43
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
TAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAGAGCGTGCGGGCGCTCAGCCGGT
CGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCCTGCTG
CCACAACCCTCGGTCCGGTTCGATCT
Found at i:26142295 original size:26 final size:26
Alignment explanation
Indices: 26142266--26142318 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26142256 CCGGTCTGAT
*
26142266 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGTGG-ATGAACTACGTATG
26142292 CTTAGACTGTGGATGAACTACGTATG
1 CTTAGACTGTGGATGAACTACGTATG
26142318 C
1 C
26142319 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGTGGATGAACTACGTATG
Found at i:26143063 original size:26 final size:26
Alignment explanation
Indices: 26143027--26143079 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26143017 TCGGTCTAAT
26143027 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26143053 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26143079 C
1 C
26143080 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26144816 original size:26 final size:26
Alignment explanation
Indices: 26144787--26144839 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26144777 TCGATCCGAT
26144787 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26144813 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26144839 C
1 C
26144840 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26145187 original size:26 final size:26
Alignment explanation
Indices: 26145142--26145194 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26145132 CCAGTCCGAT
**
26145142 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
26145168 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
26145194 C
1 C
26145195 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:26145539 original size:26 final size:26
Alignment explanation
Indices: 26145510--26145562 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26145500 CCGGTCCGAT
26145510 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
26145536 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
26145562 C
1 C
26145563 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:26145596 original size:368 final size:355
Alignment explanation
Indices: 26144754--26145596 Score: 992
Period size: 368 Copynumber: 2.3 Consensus size: 355
26144744 CTTGTTGCCG
* * *
26144754 ATCCTACTGTCACAACCCTC-AGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
1 ATCCTACTGTCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * *
26144818 ACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATAAAACGAGCATACGGGCGTTCAGCCGGTC
65 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGTC
* * * *
26144883 GGAGTGTCATAATGCGCAAGCCGAGGATCAGCCCGATCCGCCTCTGCATGCTACCGATCCCGCTA
130 GGAGAGGCATAATGCGCAAGCCGAGGATCAGCCAGATCCCCCTCTGCATGCTACCGATCCCGCTA
* * *
26144948 CCGGTCCTGCTACCACAACCCTCAGTCTGGCTGGGGCATAGACATGGAATGTACTCCCTATGCCT
195 CCGATCCTACTACCACAACCCTCAGTCTGGCTAGGGCATAGACATGGAATGTACTCCCTATGCCT
* * * * * * ***
26145013 AAGCCAACCCACGAAATGAGTGTGCGGGAGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCTGG
260 AAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGCCAACCGAAAAGGCAGAATACACAAGCCAA
** * * *
26145078 GGATCGGTCCGGTCCCCCTTGCCTGCTACCG
325 GGATCGACCCGATCCCCCTTACCTGCTACCA
* * * *
26145109 ATCCTGCTGCCGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGCACTCCGTATGCTTAGA
1 ATCCTACTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
26145174 CTGGGGATAAACTCTGTATGCCTAAGTCAACCCATGAAACGAGAGTATGGGTGCTCAGTCGATCG
66 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAG-C---C-
*
26145239 GAGTGGCTGACCGAAGAGGCATAATGCGCAAGCCGAGGATCTA-CTCAG-TCCCCCTCTGCGTGC
126 G-GT--C-G---G-AGAGGCATAATGCGCAAGCCGAGGATC-AGC-CAGATCCCCCTCTGCATGC
** ** * * *
26145302 TGTCGATCCCGCTACCGATCCTACTGTCACAACCCTCGGTCTGGCTAGGGCTTAGACGTGGAATG
181 TACCGATCCCGCTACCGATCCTACTACCACAACCCTCAGTCTGGCTAGGGCATAGACATGGAATG
* * * *
26145367 TACTCCGTATGCCTAAGGCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCAACCGAAAAGGCAG
246 TACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGCCAACCGAAAAGGCAG
** * *
26145432 AATATGCAAGCCAAGGATCGACCCGATCCCTCC-TACGTGCTATCA
311 AATACACAAGCCAAGGATCGACCCGATCCC-CCTTACCTGCTACCA
26145477 ATCCTACTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
1 ATCCTACTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
26145542 CTAGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGTGCT
66 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCT
26145597 TAACCGGCTA
Statistics
Matches: 406, Mismatches: 65, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
355 105 0.26
356 2 0.00
359 1 0.00
360 1 0.00
361 2 0.00
363 1 0.00
364 1 0.00
367 1 0.00
368 287 0.71
369 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (355 bp):
ATCCTACTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
CTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGTCG
GAGAGGCATAATGCGCAAGCCGAGGATCAGCCAGATCCCCCTCTGCATGCTACCGATCCCGCTAC
CGATCCTACTACCACAACCCTCAGTCTGGCTAGGGCATAGACATGGAATGTACTCCCTATGCCTA
AGCCAACCCACGAAACGAGCGTGCGGGAGCTCAGCCAACCGAAAAGGCAGAATACACAAGCCAAG
GATCGACCCGATCCCCCTTACCTGCTACCA
Found at i:26146547 original size:21 final size:21
Alignment explanation
Indices: 26146521--26146570 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
26146511 TGGGATCAGC
*
26146521 CCGGTCCCCCTCAGCGTGCTA
1 CCGGTCCCCCACAGCGTGCTA
*
26146542 CCGGTCCCCCACAGCGTGCTG
1 CCGGTCCCCCACAGCGTGCTA
26146563 CCGGTCCC
1 CCGGTCCC
26146571 GCTGCCACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.08, C:0.50, G:0.26, T:0.16
Consensus pattern (21 bp):
CCGGTCCCCCACAGCGTGCTA
Found at i:26149214 original size:159 final size:157
Alignment explanation
Indices: 26148806--26149306 Score: 476
Period size: 158 Copynumber: 3.2 Consensus size: 157
26148796 AGCTCCGTAT
* * *
26148806 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCAAAACTAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** *
26148871 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGTGTGCTATCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCG-CCCGATCCCCCCTACGTGCTACCGATCC
** *
26148936 TACTGCTGCAACCCTCAGTTCGGTCCGA
130 TACTGCCACAACCCTCAGTCCGGTCCGA
* * * * * * * * * *
26148964 TCTTAGAC-TAGGAATCAACTACGTATG-CATAAGTCAAACCACGAAACGAACGTGTGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCAAAACT-AACCCACGAAACGAGCGTGCGGGCGCTC
* * * * **
26149027 AGCCGGCCGAAGGGGCATAATGCCCAAGCCGACGATCAGCCCGATCCCCCTCTACGTGCTACC-A
64 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCGATCCCCC-CTACGTGCTACCGA
* *
26149091 GT-CTCGCTGCCACAACCCTCAGTCCGG-CCGGG
127 -TCCT-ACTGCCACAACCCTCAGTCCGGTCC-GA
* * * *
26149123 GCTTAGACATGGAATGAGCTCCCTATGCCAAAACTAACCCACGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCAAAACTAACCCACGAAACGAGCGTGCGGGCGCTCAG
** *
26149188 CTTGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGT-CTTACCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCGATCCCCCCTACGTGC-TACCGATC
* * * * * *
26149252 CTGCTACCGCAGCCCTCAGTCCAGCCCGA
129 CTACTGCCACAACCCTCAGTCCGGTCCGA
*
26149281 TCTTAGAC-TGGGAATGAACTCCATAT
1 GCTTAGACAT-GGAATGAACTCCATAT
26149307 CCTTAGACTA
Statistics
Matches: 270, Mismatches: 59, Indels: 28
0.76 0.17 0.08
Matches are distributed among these distances:
157 5 0.02
158 142 0.53
159 117 0.43
160 6 0.02
ACGTcount: A:0.24, C:0.32, G:0.26, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCAAAACTAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGCCCGATCCCCCCTACGTGCTACCGATCCT
ACTGCCACAACCCTCAGTCCGGTCCGA
Found at i:26150009 original size:26 final size:26
Alignment explanation
Indices: 26149973--26150025 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26149963 TTGGTTCGAT
26149973 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
26149999 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26150025 C
1 C
26150026 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26151381 original size:26 final size:26
Alignment explanation
Indices: 26151352--26151404 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26151342 CCGATCTGAT
26151352 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26151378 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26151404 C
1 C
26151405 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26152005 original size:11 final size:11
Alignment explanation
Indices: 26151988--26152036 Score: 71
Period size: 11 Copynumber: 4.5 Consensus size: 11
26151978 GGCTCTTCGG
*
26151988 CGATGCTCCGG
1 CGATGCTCCGA
*
26151999 TGATGCTCCGA
1 CGATGCTCCGA
26152010 CGATGCTCCGA
1 CGATGCTCCGA
*
26152021 CGATGCTCTGA
1 CGATGCTCCGA
26152032 CGATG
1 CGATG
26152037 GTACCCCAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 34 1.00
ACGTcount: A:0.16, C:0.31, G:0.31, T:0.22
Consensus pattern (11 bp):
CGATGCTCCGA
Found at i:26153010 original size:26 final size:26
Alignment explanation
Indices: 26152974--26153026 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26152964 CCGATCCAAT
*
26152974 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAAATTCGTATG
* *
26153000 CTTAGACTGGGGATTAAATTCGTATG
1 CTTAGACTGGGAATGAAATTCGTATG
26153026 C
1 C
26153027 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATTCGTATG
Found at i:26153724 original size:26 final size:26
Alignment explanation
Indices: 26153695--26153747 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26153685 GGCTCAAAAT
*
26153695 CTTAGAC-TGGGAATGAGCTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
26153721 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
26153747 C
1 C
26153748 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:26154567 original size:26 final size:26
Alignment explanation
Indices: 26154538--26154590 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26154528 CTGGTCCGAT
*
26154538 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
26154564 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
26154590 C
1 C
26154591 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:26155288 original size:26 final size:26
Alignment explanation
Indices: 26155259--26155311 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26155249 GGCTCAAAAT
*
26155259 CTTAGAC-TGGGAATGAGCTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
26155285 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
26155311 C
1 C
26155312 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:26156101 original size:356 final size:361
Alignment explanation
Indices: 26155599--26156560 Score: 1080
Period size: 356 Copynumber: 2.7 Consensus size: 361
26155589 GGTCCAGCTG
* * *
26155599 GGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAGCCAACGAAACAGATGTGCGGGCGCTC
1 GGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCGCTC
* * * * *** *
26155664 AGCCGGTCGGAGAGGCAGAATGAACAAGTCGGGGATCGACCCGATCCCCCCTATTTTCTGTCGAT
66 AGTCGGCCGGAGAGGCAGAATG-ACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGAT
* * * * * *
26155729 CCTACTG-TCGCAACCCTCGATCCAGGCCGATCTTAGACTAGGAATGAACTCCATTTGCTTAGAT
130 CCTGCTGCTC-CAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
* *
26155793 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCAGTCGGCTAG
194 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGACTAG
* *
26155858 AGAGGCCG-GTCGAAGAGGCATAATACGCAAGCCAAGGATCAGCCCTG-TCCCCCTCTACGTGCT
259 AGAGGCCGACT-GAAGAGGCATAATACGCAAGCCAAGGATCAG-CCAGATCCCCCTCTACGTGCT
*
26155921 -G-C-CA-GTC-CC-ACTACCAAAACCCTC-GATTCGACTA
322 CGACTCACGTCGCCTACTACCAAAACCCTCAG-TCCGACTA
* * * *
26155955 GGGCTTAGACATGGAATGAGCTCCCTACGCCTATGCCAACCCACGAAACAGGTGTGCAGGTGCTC
1 GGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCGCTC
* *
26156020 AGTCGACCGGAGAGGCAGAATGAGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGAT
66 AGTCGGCCGGAGAGGCAGAATGA-CAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGAT
* * *
26156085 CCTGCTGCTCCAACCCTCGGTCCAGTCTGATCTTAGACCAGGAATGAACTCCGTATGCTTATACT
130 CCTGCTGCTCCAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
* * * * * * *
26156150 -GGGATGAACTCTGTATGCCTAAGTCAACCAACGAAACAAGTGTGCGGGCGCTCAGTCGACTGGA
195 GGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGACTAGA
* * * * *
26156214 GAGGCCGACTGGAGAGGCATAATGCGCAAGTCAGGGATCAGCCAGATCCCCCTCTGCGTGCTGCC
260 GAGGCCGACTGAAGAGGCATAATACGCAAGCCAAGGATCAGCCAGATCCCCCTCTACGTGCT--C
* * * *
26156279 GATCTCACTGTCGGTCCTGCTACCATAACCCTCAGTCCGGCTG
323 GA-CTCAC-GTC-G-CCTACTACCAAAACCCTCAGTCCGACTA
* * * * *
26156322 GGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCATGTAAC-GAGCGTACGGGCGC
1 GGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCACGAAACAG-GTGTGCGGGCGC
* ** * * * * *
26156385 TCAGTCGGCCGGAGAGGC---A-CACAAGCCGGGGATTAGCCCGGT-CACCCTGGGTGATGCCGA
64 TCAGTCGGCCGGAGAGGCAGAATGACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGA
* * * *
26156445 TCCTGCTACTGCAACCCTCGAT-CTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
129 TCCTGCTGCTCCAACCCTCGATCCAG-TCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
26156509 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGC
193 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGC
26156561 GCTCGGCGGA
Statistics
Matches: 507, Mismatches: 78, Indels: 36
0.82 0.13 0.06
Matches are distributed among these distances:
354 3 0.01
355 105 0.21
356 165 0.33
357 2 0.00
358 1 0.00
360 3 0.01
361 72 0.14
362 61 0.12
363 4 0.01
364 1 0.00
366 3 0.01
367 85 0.17
368 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (361 bp):
GGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGGCGCTC
AGTCGGCCGGAGAGGCAGAATGACAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
CTGCTGCTCCAACCCTCGATCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTG
GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGTCGACTAGAG
AGGCCGACTGAAGAGGCATAATACGCAAGCCAAGGATCAGCCAGATCCCCCTCTACGTGCTCGAC
TCACGTCGCCTACTACCAAAACCCTCAGTCCGACTA
Found at i:26156224 original size:13 final size:13
Alignment explanation
Indices: 26156206--26156231 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26156196 GGCGCTCAGT
26156206 CGACTGGAGAGGC
1 CGACTGGAGAGGC
26156219 CGACTGGAGAGGC
1 CGACTGGAGAGGC
26156232 ATAATGCGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.46, T:0.08
Consensus pattern (13 bp):
CGACTGGAGAGGC
Found at i:26156513 original size:26 final size:26
Alignment explanation
Indices: 26156477--26156529 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26156467 CTGATCTGAT
26156477 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26156503 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26156529 C
1 C
26156530 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26157620 original size:159 final size:159
Alignment explanation
Indices: 26157225--26157656 Score: 422
Period size: 159 Copynumber: 2.7 Consensus size: 159
26157215 AGCTCCATAT
*
26157225 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * ** * ** *
26157290 TTGGT-CAGAGAGGCAGAATGCGCAAGCCGGGTATCAACCCGGTCACCCCCTGTGTGCTGTCGAT
66 CT-GTCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCACCCCCTACGAGCTGTCGAT
* * * **
26157354 CCTGCTGCCGCAACCCTTGGTCTGGTCTAA
130 CCTACTACCACAACCCTCAGTCTGGTCTAA
* * * * * ** * * * *
26157384 TCTTAGAC-TGGGAATGAACTCAGTATGCATAAGTCAGCCCATGAAATAAACGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCA
* * * * ** *
26157448 GCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGGTCGATC-CCCCTCTACGAGCTGTCGG
65 GCTGTCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCACCCC-CTACGAGCTGTCGA
**
26157512 TCCTACTACCACAACCCTCAGTCTGG-CTGGG
129 TCCTACTACCACAACCCTCAGTCTGGTCT-AA
* * * *
26157543 GCTTAGACATGGAATGAGCTCTCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * *
26157608 CTGTCCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCTCCCC
66 CTGTCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCACCCC
26157657 TGCGTGCTAC
Statistics
Matches: 209, Mismatches: 58, Indels: 11
0.75 0.21 0.04
Matches are distributed among these distances:
158 8 0.04
159 196 0.94
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
CTGTCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCACCCCCTACGAGCTGTCGATC
CTACTACCACAACCCTCAGTCTGGTCTAA
Found at i:26157750 original size:25 final size:26
Alignment explanation
Indices: 26157702--26157753 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
26157692 CCAGTCCGAT
*
26157702 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
26157728 CTTAGACTAGG-ATGAATTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26157753 C
1 C
26157754 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26158292 original size:368 final size:367
Alignment explanation
Indices: 26157504--26158529 Score: 1314
Period size: 367 Copynumber: 2.8 Consensus size: 367
26157494 CCCTCTACGA
* * * *
26157504 GCTGTCGGTCCTACTACCACAACCCTCAGT-CTGGCTGGGGCTTAGACATGGAATG-AGCTCTC-
1 GCTGTCGGTCCTGCTGCCACAACCTTCAGTCCT-ACTGGGGCTTAGACATGGAATGTA-CTC-CG
* * * *
26157566 TATGCCTAAGCCAACCCATGAAACGGGCGTACGGGTGCTCAGCTGTCCGGAGAGGCAGAATGCGT
63 TATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGCCG-GCGGAAAGGCAGAATGCGT
* * * * *
26157631 AAGCCGAGGATCGGCCC-GATCTCCCCTGCGTGCTACCAATCCTGCTGTCGCAACCTTCGGTCCA
127 AAGCCGAGGATCGGCCCAG-TCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGATCCG
*
26157695 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTA-GGATGAA-TTTCGTATGCCTAA
191 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCT-GTATGCCTAA
* * * * * * *
26157758 GTCAACCCACGAAATGAGCGTACAGGTGGTTAGCCGGTCGGAGAGGCCGACCGGAGAGGCATAAT
255 GTCAACCCACGAAATGAGCGTGCGGGCGCTTAGCCGATCGAAGAGGCCAACCGGAGAGGCATAAT
26157823 GCGCAAGCCAAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCCT
320 GCGCAAGCCAAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * *
26157871 GCTGTCAGTCCTGCCGCCATAACCCTT-GGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTA
1 GCTGTCGGTCCTGCTGCCACAA-CCTTCAGTCCTACTGGGGCTTAGACATGGAATGTACTCCGTA
** * *
26157935 TGCCTAAGCCAACCCATGAAACGAGCGTGTGGGTGCTCAACCGGCTGGAAAGGCAGAATGCGCAA
65 TGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGC-GGAAAGGCAGAATGCGTAA
* * * *
26158000 GCCGAGGATCGACCCAGTCCCCCCTGCATGCTGCCGGTCCTGCTGTCGCAACCCTCGATCCGGTC
129 GCCGAGGATCGGCCCAGTCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGATCCGGTC
* * * *
26158065 CGATCCTAGACTGAGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCTGTATGCCAAAGTCA
194 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCA
* * * *
26158130 GCCCACGAAATGAGCGTGCGGGCACTCAGCCGATCGAAGAGGCCAATCGGAGAGGCATAATGCGC
259 ACCCACGAAATGAGCGTGCGGGCGCTTAGCCGATCGAAGAGGCCAACCGGAGAGGCATAATGCGC
* ** * *
26158195 ATGCCGGGGATCAGCCCGGTCCCCCTTTGCGTGCTGTCGATCCT
324 AAGCCAAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCCT
*
26158239 GCTGTCGGTCCTGCTGCCACAACCTTCTGTCCTACTGGGGCTTAGACATGGAATGTACTCCGTAT
1 GCTGTCGGTCCTGCTGCCACAACCTTCAGTCCTACTGGGGCTTAGACATGGAATGTACTCCGTAT
* * * *
26158304 GCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGCCGGCCGAAGAGGCAAAATGCGTAAG
66 GCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCGGAA-AGGCAGAATGCGTAAG
* * * ** * * *
26158369 TCGGGGATCGGCCCAGT-CCCCTTGCGTGCTAATGATCTTGCT-TCCACAACCCTCGATCCGGTT
130 CCGAGGATCGGCCCAGTCCCCCCTGCGTGCTACCGATCCTGCTGT-CGCAACCCTCGATCCGGTC
* * * *
26158432 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGACCTCCGTATGCTTAAGTCA
194 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCA
*
26158497 ACCCGCGAAATGAGCGTGCGGGCGCTTAGCCGA
259 ACCCACGAAATGAGCGTGCGGGCGCTTAGCCGA
26158530 CCAGAGAGGC
Statistics
Matches: 564, Mismatches: 84, Indels: 22
0.84 0.13 0.03
Matches are distributed among these distances:
366 3 0.01
367 318 0.56
368 241 0.43
369 2 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (367 bp):
GCTGTCGGTCCTGCTGCCACAACCTTCAGTCCTACTGGGGCTTAGACATGGAATGTACTCCGTAT
GCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGCGGAAAGGCAGAATGCGTAAGC
CGAGGATCGGCCCAGTCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGATCCGGTCCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAAC
CCACGAAATGAGCGTGCGGGCGCTTAGCCGATCGAAGAGGCCAACCGGAGAGGCATAATGCGCAA
GCCAAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCCT
Found at i:26158465 original size:26 final size:26
Alignment explanation
Indices: 26158436--26158491 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
26158426 CCGGTTTGAT
26158436 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
26158462 CTTAGACTAGGGATGACCTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
26158488 CTTA
1 CTTA
26158492 AGTCAACCCG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:26159209 original size:26 final size:26
Alignment explanation
Indices: 26159158--26159210 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26159148 GGCTCAAAAT
* *
26159158 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26159184 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
26159210 C
1 C
26159211 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26159696 original size:26 final size:26
Alignment explanation
Indices: 26159660--26159712 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26159650 TCGGTTCGAT
26159660 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26159686 CTTAGACTGGGGATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26159712 C
1 C
26159713 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26159991 original size:26 final size:26
Alignment explanation
Indices: 26159962--26160014 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26159952 TCGATCTAAT
26159962 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26159988 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26160014 C
1 C
26160015 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26160174 original size:97 final size:97
Alignment explanation
Indices: 26160002--26160177 Score: 221
Period size: 97 Copynumber: 1.8 Consensus size: 97
26159992 GACTGGGGAT
* * * **
26160002 GAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAACCGGTCTGAGAGGCA
1 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACCAATCTGAGAGGCA
* *
26160067 TAATGTGCAAGCCGTATGGTTAGACATGGAAG
66 GAATGCGCAAGCCGTATGGTTAGACATGGAAG
* * * *
26160099 GAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCGCTCAGCCAAT-TG-GAGTGC
1 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACCAATCTGAGAG-GC
26160162 TAGAATGCGCAAGCCG
65 -AGAATGCGCAAGCCG
26160178 GGAATCGACC
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
95 3 0.05
96 4 0.06
97 59 0.89
ACGTcount: A:0.28, C:0.25, G:0.29, T:0.18
Consensus pattern (97 bp):
GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACCAATCTGAGAGGCA
GAATGCGCAAGCCGTATGGTTAGACATGGAAG
Found at i:26160941 original size:26 final size:26
Alignment explanation
Indices: 26160912--26160967 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
26160902 CTGATCTGAT
*
26160912 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26160938 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26160964 CTTA
1 CTTA
26160968 AGTCAACCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26161015 original size:352 final size:355
Alignment explanation
Indices: 26160378--26161016 Score: 847
Period size: 352 Copynumber: 1.8 Consensus size: 355
26160368 GATCCCATTG
* *
26160378 CCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCAC
* * * * ** * **
26160443 GAAACGGGCGTGCGGGCGCTAAACGGGCTGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCTGG
66 GAAACGAGCGTACGGGCACTAAACCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAG
** * * * * * *
26160508 TCCCCCTTGCGTGCTGCCAATCCTGTTGATGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGAA
131 TCCCCAATGCGTGCTGCCAATCCTGCTGACGCAAACCTCGATCTGATCCAATCTTAGACTGGGAA
* * *
26160573 TGAACTCCATGTGCTTAGACCGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAGACGAGCGT
196 TGAACTCCATATGCTTAGACCGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAT
* * *
26160638 GTGGGTGCTCAGCCAGACGGAGAGGCATAATGTGCAAGCCGAGGATCAGTCCGGTCCCCCTCTGC
261 GCGGGCGCTCAGCCAGACAGAGAGGCATAATGTGCAAGCCGAGGATCAGTCCGGTCCCCCTCTGC
26160703 GTGCTGTCGATCCCGTTGTCGGTCTTGCTA
326 GTGCTGTCGATCCCGTTGTCGGTCTTGCTA
* * *** *
26160733 CCACAACCCTCGGTCTAGCT-GGGCTTAGACATGGAATGTGCTTTGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCAC
* *
26160797 GAAACGAGCGTACGGGCACTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCA-GGATCGGCCCAG
66 GAAACGAGCGTACGGGCACTAAACCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAG
* **
26160861 TCCCCAATGCGTGCTGTC-ATCCTGCT-ACCGCAAACCTCGATCTGATCTGATCTTAGACTGGGA
131 TCCCCAATGCGTGCTGCCAATCCTGCTGA-CGCAAACCTCGATCTGATCCAATCTTAGACTGGGA
** * * * *
26160924 ATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCTTAAGTCAACCTATGAAACGAGCA
195 ATGAACTCCATATGCTTAGACCGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCA
26160989 TGCGGGCGCTCAGCCA-ACCAGAGAGGCA
260 TGCGGGCGCTCAGCCAGA-CAGAGAGGCA
26161017 AGATGCGCAA
Statistics
Matches: 240, Mismatches: 42, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
351 2 0.01
352 114 0.47
353 25 0.10
354 82 0.34
355 17 0.07
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (355 bp):
CCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCAC
GAAACGAGCGTACGGGCACTAAACCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAG
TCCCCAATGCGTGCTGCCAATCCTGCTGACGCAAACCTCGATCTGATCCAATCTTAGACTGGGAA
TGAACTCCATATGCTTAGACCGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAT
GCGGGCGCTCAGCCAGACAGAGAGGCATAATGTGCAAGCCGAGGATCAGTCCGGTCCCCCTCTGC
GTGCTGTCGATCCCGTTGTCGGTCTTGCTA
Found at i:26162173 original size:26 final size:26
Alignment explanation
Indices: 26162144--26162196 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26162134 CCGGTTCGAT
26162144 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
26162170 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
26162196 C
1 C
26162197 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:26163624 original size:159 final size:157
Alignment explanation
Indices: 26163272--26163653 Score: 390
Period size: 159 Copynumber: 2.4 Consensus size: 157
26163262 TTCGTATGCT
** *
26163272 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCA
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGCCA
* * * ** * * *
26163337 GCCGGAGAGGCAGAAAGTGCAAGCCGGGGATCGACCCGGTCCCCCTAAGTGCTGTCGATGCTGCT
66 GCCGAAAAGGCAGAAAGCGCAAGCCGGGGATCGACCCAATCCCCCTAAGTGCTATCGATCCCGCT
* * *
26163402 ACCACAACCCTCGATCCGTTTCGATCT
131 ACCACAACCCTCGATCCGATTCGAGCA
* * * ** * *
26163429 TAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATTAAACGAGCATGCGGGCACTGAGCT
1 TAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGCC
* * * * ** *
26163493 AGCCGAAAAGGCATAATGCGCAAGTCGGGGATC-AGTCCAATCCCCCTCTGTGTGCTATCGGTCC
65 AGCCGAAAAGGCAGAAAGCGCAAGCCGGGGATCGA-CCCAAT-CCCC-CTAAGTGCTATCGATCC
* * * *
26163557 CGCTACCACAACCCTCGGTCTGATTGGGGCA
127 CGCTACCACAACCCTCGATCCGATTCGAGCA
* * * *
26163588 TAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGCCA
1 TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGCCA
26163653 G
66 G
26163654 TACCCCTTGC
Statistics
Matches: 178, Mismatches: 42, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
156 2 0.01
157 82 0.46
158 4 0.02
159 89 0.50
160 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAGCCA
GCCGAAAAGGCAGAAAGCGCAAGCCGGGGATCGACCCAATCCCCCTAAGTGCTATCGATCCCGCT
ACCACAACCCTCGATCCGATTCGAGCA
Found at i:26163735 original size:26 final size:26
Alignment explanation
Indices: 26163706--26163758 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26163696 CCGATCCGAT
26163706 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26163732 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26163758 C
1 C
26163759 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26164115 original size:26 final size:26
Alignment explanation
Indices: 26164074--26164124 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26164064 CCAGTTCAAT
*
26164074 CTTAGACAGGGAATGAACTTCGTATA
1 CTTAGACAGGGAATGAACTCCGTATA
* *
26164100 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACAGGGAATGAACTCCGTAT
26164125 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATA
Found at i:26165323 original size:159 final size:159
Alignment explanation
Indices: 26164991--26165325 Score: 343
Period size: 159 Copynumber: 2.1 Consensus size: 159
26164981 AGCTCCGTGT
* * * * * *
26164991 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAGCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCGCTAAA
*** * *
26165056 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGGTCCCCCCCTACGTGCTATCAATC
66 CCAACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCAGGTCCCCCCCTACGTGCTATCAATC
* * *
26165121 CTACTGCCACAACCCTTGGTCCGATCCAA
131 CTACTGCCACAACCCTCGATCCGAGCCAA
* * * * *
26165150 TCTTAGA-TTGGGAATGAACTCCGTATGGATAAGTCAACCCATGAAACGAACGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCGCTAA
* * * * * **
26165214 ACCAACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGTTA-CTGG
65 ACCAACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCAGGTCCCCCCCTACGTGCTATC-AA
** * * *
26165278 TCCTGTTGCCACAACCCTCGATCTG-GCTAGG
129 TCCTACTGCCACAACCCTCGATCCGAGCCA-A
26165309 GCTTAGACATGGAATGA
1 GCTTAGACATGGAATGA
26165326 GCTAGCTATG
Statistics
Matches: 139, Mismatches: 33, Indels: 8
0.77 0.18 0.04
Matches are distributed among these distances:
158 4 0.03
159 134 0.96
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCGCTAAA
CCAACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCAGGTCCCCCCCTACGTGCTATCAATC
CTACTGCCACAACCCTCGATCCGAGCCAA
Found at i:26166548 original size:159 final size:159
Alignment explanation
Indices: 26166216--26166550 Score: 343
Period size: 159 Copynumber: 2.1 Consensus size: 159
26166206 AGCTCCGTGT
* * * * * *
26166216 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAGCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCGCTAAA
*** * *
26166281 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGGTCCCCCCCTACGTGCTATCAATC
66 CCAACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCAGGTCCCCCCCTACGTGCTATCAATC
* * *
26166346 CTACTGCCACAACCCTTGGTCCGATCCAA
131 CTACTGCCACAACCCTCGATCCGAGCCAA
* * * * *
26166375 TCTTAGA-TTGGGAATGAACTCCGTATGGATAAGTCAACCCATGAAACGAACGTGCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCGCTAA
* * * * * **
26166439 ACCAACCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGTTA-CTGG
65 ACCAACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCAGGTCCCCCCCTACGTGCTATC-AA
** * * *
26166503 TCCTGTTGCCACAACCCTCGATCTG-GCTAGG
129 TCCTACTGCCACAACCCTCGATCCGAGCCA-A
26166534 GCTTAGACATGGAATGA
1 GCTTAGACATGGAATGA
26166551 GCTAGCTATG
Statistics
Matches: 139, Mismatches: 33, Indels: 8
0.77 0.18 0.04
Matches are distributed among these distances:
158 4 0.03
159 134 0.96
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAACGTGCGGGCGCTAAA
CCAACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCAGGTCCCCCCCTACGTGCTATCAATC
CTACTGCCACAACCCTCGATCCGAGCCAA
Found at i:26167769 original size:26 final size:26
Alignment explanation
Indices: 26167733--26167785 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26167723 CTGGTTCGAT
26167733 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
26167759 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
26167785 C
1 C
26167786 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:26168124 original size:26 final size:26
Alignment explanation
Indices: 26168088--26168140 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26168078 CCGGTCTGAT
26168088 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26168114 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
26168140 C
1 C
26168141 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26168345 original size:368 final size:361
Alignment explanation
Indices: 26167539--26168903 Score: 1504
Period size: 368 Copynumber: 3.8 Consensus size: 361
26167529 TTGTGTGCTA
* * * * ** *
26167539 CCGGTCCCGCTGCCACAACCTTCGGT-TCGGTTGGGGCTTAGACATGGAATG-AGCTCCGTATGC
1 CCGGTCCTGCAGCCACAACCCTCGGTCT-GGCTGGGGCTTAGATGTGGAATGTA-CTCTGTATGC
* * * * * *
26167602 CCAAGCCAACCCATGAAACGTGCGTGCGGGCT-CTCA-TTGGACCGAAGAGGTAGAATGCGCAAG
64 CTAAGCCAACCCATGAAATGAGCGTG-GGG-TGCTTAGTCGG-CCGGAGAGGTAGAATGCGCAAG
* * * * * * * * * * *
26167665 TCGGAGATCAGATCGGTCCCCCCTGCGTGCTGTCGATACTACTGTCGAAACCCTCGGTCTGGT-T
126 CCGGGGATC-GACCCGTTCCCCCTGCGTGCTGTCGATCCT-GTATCGCAACCCTCGATCCGGTCT
* *
26167729 CGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
189 -GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCA
* * * *
26167794 ACCCACGAAACGAGGGTACGAGCGCT--CA-ATC---GGCC-A--GAGAGGCATAATGCATAAGC
253 ACCCACGAAACGAGCGTGCGGGCGCTCACAGACCAAAGGCCGATCGAGAGGCATAATGCATAAGC
* * * * *
26167850 CAGGGATCAGCTCAGTCCTCCTCTACGTGCTG-TCGATCCCGCTG
318 CGGGGATCAGCCCGGTCCCCCTCTACGTGCTGCT-GATCTCGCTG
* **
26167894 CCGGTCCTACTA-CCACAACCCTCGGTCCAGCTGGGGCTTAGATGTGGAATGTACTCTGTATGCC
1 CCGGTCCTGC-AGCCACAACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGTACTCTGTATGCC
* * * *
26167958 TAAGCCAACCCACGAAATGAGTGTGTGGGTGCTTAGTCGGCCGGAGAGGCAGAATGCACAAGCCG
65 TAAGCCAACCCATGAAATGAGCGTG-GGGTGCTTAGTCGGCCGGAGAGGTAGAATGCGCAAGCCG
* * ** * **
26168023 GGGATCAACCCAGTTCCCTCTATGTGCTGTCGATCCTGTTACCGCGGCCCTCGATCCGGTCTGAT
129 GGGATCGACCC-GTTCCCCCTGCGTGCTGTCGATCCTG-TATCGCAACCCTCGATCCGGTCTGAT
*
26168088 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCC
192 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCC
* * **
26168153 ACGAAACGAGCGTGTGGGCGCTCAACAGACCGAAAAGGCCGATCGGAGAGGCATAATGCGTAAAT
257 ACGAAACGAGCGTGCGGGCGCTC-ACAGACC--AAAGGCCGATC-GAGAGGCATAATGCATAAGC
*
26168218 CGGGGATCAACCCGGTCCCCCTCTACGTGCTGCTGATCTCGCTG
318 CGGGGATCAGCCCGGTCCCCCTCTACGTGCTGCTGATCTCGCTG
* * * *
26168262 CCGGTCCTGCAGCCATAACCCTCGGTTTGGCTGGGGCTTAGACGTGAAATGTACTCTGTATGCCT
1 CCGGTCCTGCAGCCACAACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGTACTCTGTATGCCT
* *
26168327 AAGCCAACCCATGAAATGAGCGTGCGGGCGCTTAGTCGGCCGGAGAGGTAGAATGCGCAAGCCGA
66 AAGCCAACCCATGAAATGAGCGTG-GGGTGCTTAGTCGGCCGGAGAGGTAGAATGCGCAAGCCGG
* * * * * *
26168392 GGATCGATCCGGTCCCCCCTGCGTGCTGTCGATCCTGTAGTCGTAACCCTCAATCTGGTCCGATC
130 GGATCGA-CCCGTTCCCCCTGCGTGCTGTCGATCCTGTA-TCGCAACCCTCGATCCGGTCTGATC
* * ** *
26168457 TTAGACTAGGAATGCACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAATCAACCCA
193 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCA
* * *
26168522 CGAAATGAGCGTGCGGGCGCTCAGCCAG-CCAGAGAGACCGATCAGAGAGGCATAATACATAAGC
258 CGAAACGAGCGTGCGGGCGCTCA--CAGACCA-A-AGGCCGATC-GAGAGGCATAATGCATAAGC
* * * * * *
26168586 CGAGGATCAGCCCGATCCCCCTCTGCATGCTGCCGACCTCGCTG
318 CGGGGATCAGCCCGGTCCCCCTCTACGTGCTGCTGATCTCGCTG
* * * *
26168630 CCAGTCCTGCTGCCACAACACTCGGTCTGGCAGGGGCTTAGATGTGGAATGTACTCTGTATGCCT
1 CCGGTCCTGCAGCCACAACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGTACTCTGTATGCCT
* * * * **
26168695 AAGCCAACCCATGAAACGAGCATGCGGTGCTCAGTCGATCGGAGAGGTAGAATGCGCAAGCCGGG
66 AAGCCAACCCATGAAATGAGCGTGGGGTGCTTAGTCGGCCGGAGAGGTAGAATGCGCAAGCCGGG
* * *
26168760 GATCGGCCCGATCCCCCTGCGTGCTGTTGATCCTGCTATCGCAACCCTCGATCCGGTCTGATCTT
131 GATCGACCCGTTCCCCCTGCGTGCTGTCGATCCTG-TATCGCAACCCTCGATCCGGTCTGATCTT
* * *
26168825 AGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAATTCAACCCGCG
195 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACG
26168890 AAACGAGCGTGCGG
260 AAACGAGCGTGCGG
26168904 ATGCTCAGCG
Statistics
Matches: 843, Mismatches: 137, Indels: 49
0.82 0.13 0.05
Matches are distributed among these distances:
354 3 0.00
355 219 0.26
356 5 0.01
358 2 0.00
359 2 0.00
364 4 0.00
365 1 0.00
366 120 0.14
367 47 0.06
368 434 0.51
369 6 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (361 bp):
CCGGTCCTGCAGCCACAACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGTACTCTGTATGCCT
AAGCCAACCCATGAAATGAGCGTGGGGTGCTTAGTCGGCCGGAGAGGTAGAATGCGCAAGCCGGG
GATCGACCCGTTCCCCCTGCGTGCTGTCGATCCTGTATCGCAACCCTCGATCCGGTCTGATCTTA
GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGA
AACGAGCGTGCGGGCGCTCACAGACCAAAGGCCGATCGAGAGGCATAATGCATAAGCCGGGGATC
AGCCCGGTCCCCCTCTACGTGCTGCTGATCTCGCTG
Found at i:26168485 original size:26 final size:26
Alignment explanation
Indices: 26168456--26168508 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26168446 CTGGTCCGAT
*
26168456 CTTAGACTAGGAATGCACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
26168482 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26168508 C
1 C
26168509 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26168851 original size:26 final size:26
Alignment explanation
Indices: 26168822--26168874 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26168812 CCGGTCTGAT
*
26168822 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
26168848 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
26168874 C
1 C
26168875 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:26170038 original size:26 final size:26
Alignment explanation
Indices: 26170002--26170054 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26169992 CCAGTCTAAT
*
26170002 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26170028 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26170054 C
1 C
26170055 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26170399 original size:26 final size:26
Alignment explanation
Indices: 26170370--26170422 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26170360 CCGATCTGAT
*
26170370 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26170396 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
26170422 C
1 C
26170423 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26171121 original size:26 final size:26
Alignment explanation
Indices: 26171092--26171141 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
26171082 GGCTCAAAAT
*
26171092 CTTAGAC-TGGGAATGAGCTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
26171118 CTTAGACATGGAATGAACTCTGTA
1 CTTAGACATGGAATGAACTCTGTA
26171142 GGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:26171318 original size:25 final size:25
Alignment explanation
Indices: 26171282--26171329 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
26171272 TCTGATCTTA
26171282 GACTGGGAATGAACTCCGTATGCTT
1 GACTGGGAATGAACTCCGTATGCTT
*
26171307 GACTGGGGATGAACTCCGTATGC
1 GACTGGGAATGAACTCCGTATGC
26171330 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (25 bp):
GACTGGGAATGAACTCCGTATGCTT
Found at i:26171673 original size:26 final size:26
Alignment explanation
Indices: 26171644--26171696 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26171634 CCGGTCCTAT
*
26171644 CTTAGATTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
* *
26171670 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
26171696 C
1 C
26171697 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:26172601 original size:25 final size:25
Alignment explanation
Indices: 26172565--26172612 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
26172555 TCTGATCTTA
26172565 GACTGGGAATGAACTCCGTATGCTT
1 GACTGGGAATGAACTCCGTATGCTT
* *
26172590 GACTGGGGATGAACTCTGTATGC
1 GACTGGGAATGAACTCCGTATGC
26172613 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (25 bp):
GACTGGGAATGAACTCCGTATGCTT
Found at i:26172957 original size:26 final size:26
Alignment explanation
Indices: 26172928--26172980 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26172918 CCGGTCCTAT
*
26172928 CTTAGATTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
* *
26172954 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
26172980 C
1 C
26172981 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:26173965 original size:159 final size:159
Alignment explanation
Indices: 26173686--26174020 Score: 415
Period size: 159 Copynumber: 2.1 Consensus size: 159
26173676 CTTAGACATA
* * ** *
26173686 GAATGAACTCCGTATTCCTAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAGTCAACCGGAGA
1 GAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAACCAACCGAAGA
* * * * *
26173751 GGCAGAATTCGCAAGCTGGGGATCTACCCGATCCCCCCATGCATGCCGTCGATCCTGCTACTGCA
66 GGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCATGCATGCCGTCGATCCTACTACCGCA
*
26173816 ACCCTCAATCTGGTCTAATCTTAGACTGG
131 ACCCTCAATCTAGTCTAATCTTAGACTGG
** * * * *
26173845 GAATGAACTCCGTATGCATAAGTTAACCCACGAAACGAGCGTGCGGGCT-CTGAACCGATCGAAG
1 GAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGG-TGCTCAACCAACCGAAG
* * *
26173909 AGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTC-TGCATGCTG-CTGATCCTACTACC
65 AGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CATGCATGCCGTC-GATCCTACTACC
* * *
26173972 GCAACCCTCTATCTAGTCTGATCTTAGATTGG
128 GCAACCCTCAATCTAGTCTAATCTTAGACTGG
26174004 GAATGAACTCCGTATGC
1 GAATGAACTCCGTATGC
26174021 TTAGACTGGG
Statistics
Matches: 150, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
158 1 0.01
159 147 0.98
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (159 bp):
GAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGCGTGCGGGTGCTCAACCAACCGAAGA
GGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCATGCATGCCGTCGATCCTACTACCGCA
ACCCTCAATCTAGTCTAATCTTAGACTGG
Found at i:26174030 original size:26 final size:26
Alignment explanation
Indices: 26173994--26174046 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26173984 CTAGTCTGAT
*
26173994 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26174020 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26174046 C
1 C
26174047 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26175018 original size:26 final size:26
Alignment explanation
Indices: 26174982--26175034 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26174972 CCGGTCTGAT
26174982 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26175008 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26175034 C
1 C
26175035 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26175469 original size:368 final size:366
Alignment explanation
Indices: 26174784--26175811 Score: 1214
Period size: 368 Copynumber: 2.8 Consensus size: 366
26174774 CTCTCTGCGT
* * * *
26174784 GCTGTCGGTCCCGCTAG-CACAACCCTCAGTCTGATTGGGGCTTAGACATGGAATG-AGCTCCCT
1 GCTGTCGGTCCTGCT-GCCACAACCCTCAGTCCGATTGGGGCTTAGACGTGGAATGTA-CTCCGT
* * * * *
26174847 ATGCCTAAGCAAACCCACGAAACG-GACGTGTGGGCACTTAG-TCGGTCGGAGAGGTAGAATGTG
64 ATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCAGCT-GGCCGGAGAGGTAGAATGTG
*** * * * * * * *
26174910 CAAGTTAGGGACCGGCCCGATCCGCCCTACTTCTTGTCGATCCTGCTGCCGCAAACCTCGGTCCG
127 CAAGCCGGGGATCGGCCCGGTCCCCCCTACTGC-TGTCGATCCTGCTGCCGCAACCCTCGATTCG
* *
26174975 GTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
191 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT-CATATGCCTAAG
* * * * *
26175040 TCAATCCATC-AAATGAGCGTACGGGCGCTCAGCCGACTGGAAAGGCCGATCGGAGAGGCATAAT
255 TCAACCCA-CGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAAAGGCCGATCGAAAAGGCATAAT
* * * * *
26175104 GCGTAAGTCGAGGATCAGCCCGGTCTC-CCTCTGCGTGCTACCGATCTC-
319 GCGCAAGCCGAGGATCAG-CCGGACCCTCCTCTACGTGCTACCGATC-CA
* * *
26175152 GCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACGTGGAATGTACTCCGTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGATTGGGGCTTAGACGTGGAATGTACTCCGTAT
* *
26175217 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCTGAGAGGTAGAATGTGCAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGTAGAATGTGCAAG
* * * *
26175282 CCGGGGATTGGCCCGGTCCCCCCTGCATGCTGTCGATCTTGCTGCCGCAACCCTCGATTCGGTTT
131 CCGGGGATCGGCCCGGTCCCCCCTAC-TGCTGTCGATCCTGCTGCCGCAACCCTCGATTCGGTCT
* * * *
26175347 GATCTTAGACTGGGAATGAATTTCGCATGCTTAGATTGGGGATGAACTCATTATGCCTAAGTCAA
195 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCA-TATGCCTAAGTCAA
* * * * * *
26175412 CCCACGAAACGAGCATGCGGGCGCTCAGTCG-GTCGGAGAGGTCGA-CTGAAAAGGCATAATGTG
259 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACT-GGAAAGGCCGATC-GAAAAGGCATAATGCG
* *
26175475 CAAGCCGAGGATCAGCCTGACCCTCCTCTACGTGCTGCCGATCCA
322 CAAGCCGAGGATCAGCCGGACCCTCCTCTACGTGCTACCGATCCA
* * * *
26175520 GCTGCCGGTCCTGCTGCCATAACCCTCAGTCCGACTGGGGTTTAGACGTGGAATGTACTCCGTAT
1 GCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGATTGGGGCTTAGACGTGGAATGTACTCCGTAT
* * *
26175585 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGTAGAATGTGCAAG
** * * * *
26175650 CCGGGGATCGGCTTGGTCCCCCTTATGTGCTATCGATCCTGCTGCCGCAACCCTTGA-TCTGGTC
131 CCGGGGATCGGCCCGGTCCCCCCTA-CTGCTGTCGATCCTGCTGCCGCAACCCTCGATTC-GGTC
** *
26175714 TGATCTTAGACTCAGAATGAACTCCGTATGCTTAGACT-GGGATGAACTACATATGCCTAAGTAA
194 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT-CATATGCCTAAGTCA
*
26175778 ACCCACGAAACGAGCGTGCGGGCGTTCAGCCGAC
258 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAC
26175812 CAGAGAGGCC
Statistics
Matches: 560, Mismatches: 85, Indels: 30
0.83 0.13 0.04
Matches are distributed among these distances:
367 64 0.11
368 491 0.88
369 5 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (366 bp):
GCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGATTGGGGCTTAGACGTGGAATGTACTCCGTAT
GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCGGAGAGGTAGAATGTGCAAG
CCGGGGATCGGCCCGGTCCCCCCTACTGCTGTCGATCCTGCTGCCGCAACCCTCGATTCGGTCTG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCATATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGACTGGAAAGGCCGATCGAAAAGGCATAATGCGCAAG
CCGAGGATCAGCCGGACCCTCCTCTACGTGCTACCGATCCA
Found at i:26176347 original size:26 final size:26
Alignment explanation
Indices: 26176318--26176369 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
26176308 CGGTCCAATT
*
26176318 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
26176344 TTAGACTGGGGATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
26176370 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:26176671 original size:355 final size:342
Alignment explanation
Indices: 26176123--26177104 Score: 993
Period size: 355 Copynumber: 2.8 Consensus size: 342
26176113 CCGTGAGTTG
* * * *
26176123 CCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAGTG-AGCTCCCTATGCC
1 CCGGTCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGTAG-TCCGTATGCC
* * * ** * * * * *
26176187 TAAGACAAACCATGAAACGGGTATGCAAGCGCTCAGCCGATCGAAGAGGCAGAATGTTCAAGCTG
65 TAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAACTGATAGAA-AGGCAGAATGTGCAAGCTG
* * *** * * *
26176252 GGGATCAG-CCTGGCCCCTCCTACGTGCTACCGATCCTACTGTCGCAACCCTCGATCCGGTCCAA
129 AGGATCGGCCCAATCCCC-CCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGATCCAGTCCAA
* * *
26176316 TTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACT
193 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
* * * ** *
26176381 CACGAAATGAGCGTACGGGTGCTCAGCCAGCCAAAGAGGCATAATGCATAGGCTGAGGATCAGCT
258 CACGAAACGAGCGTACGGGCGCTCAGCCAGCCAAAGAGGCATAATGCATAAGCCAAGGATCAGCC
* *
26176446 CAG-CCCCCTTCTGCTTGCTGTCGA
323 CAGTCCCCC-TATGCATGC--T--A
**
26176470 TCCCGCTGTCGGTCCTGCTACCACAACCCTCAGTTTGGCTGGGGCTTAGACATGGAATGTAGTCC
1 -----C---CGGTCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGTAGTCC
**
26176535 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAACTGACTAGAAAGAAAGAATGTG
58 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAACTGA-TAGAAAGGCAGAATGTG
* * * *
26176600 GAAGCCGAGGATCGGCCCAATCCCCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTTGATCCA
122 CAAGCTGAGGATCGGCCCAATCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGATCCA
* *
26176665 GTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACACCGTATGCCTAAG
187 GTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
* * * * * * ** *
26176730 TCAACCCACGAAACGAGTGTGCGGGCGGTCAGTCGGTCGGAGAGGCATAATGCGTAAGCCAAGGA
252 TCAACCCACGAAACGAGCGTACGGGCGCTCAGCCAGCCAAAGAGGCATAATGCATAAGCCAAGGA
*
26176795 TCAGCCCGGTCCCCCTATGCATGCTA
317 TCAGCCCAGTCCCCCTATGCATGCTA
* * * *** * * *
26176821 CCGATCCTGCTACCACAACCCCCAATCCAATTAGGGCTTAGACGTGGAATGTACTCCGTATGCCT
1 CCGGTCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGTAGTCCGTATGCCT
* * * * * * * * *
26176886 AAGCCAACCCATGAAACGAACGTGCGGGTGCTC-AGTCGATTGGAGAGGCAGAATGCGTAATCTG
66 AAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAACT-GA-TAGAAAGGCAGAATGTGCAAGCTG
** * * ** * *
26176950 AGGATCGGCCTGATCCCCCTTGTGTGCTACCGATCCTGCTACCGCAACCCTCGAT-CTGATCCGA
129 AGGATCGGCCCAATCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGATCCAG-TCCAA
* * *
26177014 TCTTAGACTGGGAATGAACTCCGTAAGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACC
193 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
* *
26177079 CACGAAACGAGCGTGCGAGCGCTCAG
258 CACGAAACGAGCGTACGGGCGCTCAG
26177105 TCGACTAGAG
Statistics
Matches: 526, Mismatches: 95, Indels: 27
0.81 0.15 0.04
Matches are distributed among these distances:
342 4 0.01
343 235 0.45
346 1 0.00
351 1 0.00
352 1 0.00
353 1 0.00
355 266 0.51
356 17 0.03
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (342 bp):
CCGGTCCTGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGTAGTCCGTATGCCT
AAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAACTGATAGAAAGGCAGAATGTGCAAGCTGAG
GATCGGCCCAATCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGATCCAGTCCAATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTACGGGCGCTCAGCCAGCCAAAGAGGCATAATGCATAAGCCAAGGATCAGCCCAG
TCCCCCTATGCATGCTA
Found at i:26176708 original size:26 final size:26
Alignment explanation
Indices: 26176672--26176724 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26176662 CCAGTCCAAT
* *
26176672 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
26176698 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
26176724 C
1 C
26176725 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:26177019 original size:343 final size:346
Alignment explanation
Indices: 26176265--26177107 Score: 942
Period size: 343 Copynumber: 2.4 Consensus size: 346
26176255 ATCAGCCTGG
* * * *
26176265 CCCCTCCTACGTGCTACCGATCCTACTGTCGCAACCCTCGATCCGGTCCAATTTTAGACTGGGAA
1 CCCC-CCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGAT-CGATCCAATCTTAGACTGGGAA
* * *
26176330 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACTCACGAAATGAGCGT
64 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * ** * *
26176395 ACGGGTGCTCAGCCAGCCAAAGAGGCATAATGCATAGGCTGAGGATCAGCTCAGCCCCCTTCTGC
129 GCGGGCGCTCAGTCGGCCAAAGAGGCATAATGCATAAGCCAAGGATCAGCCCAGCCCCCTTATGC
* * * * **** *
26176460 TTGCTGTCGATCCCGCTGTCGGTCCTGCTACCACAACCCTCAGTTTGGCTGGGGCTTAGACATGG
194 ATGC-GTC-A---C-C--TCGATCCTGCTACCACAACCCCCAATCCAACTAGGGCTTAGACATGG
* *
26176525 AATGTAGTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAACTGACTAGAAAG
251 AATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCAGGCGCTCAACTGACTAGAAAG
*
26176590 AAAGAATGTGGAAGCCGAGGATCGGCCCAAT
316 AAAGAATGCGGAAGCCGAGGATCGGCCCAAT
* * *
26176621 CCCCCCTGCGTGCTGCCGATCCTGCTGTCGCAACCCTTGATCCAGTCCAATCTTAGACTGGGAAT
1 CCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGATCGA-TCCAATCTTAGACTGGGAAT
* * *
26176686 GAACTCTGTATGCTTAGACTGGGGATGAACACCGTATGCCTAAGTCAACCCACGAAACGAGTGTG
65 GAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * ** * *
26176751 CGGGCGGTCAGTCGGTCGGAGAGGCATAATGCGTAAGCCAAGGATCAGCCCGGTCCCCC-TATGC
130 CGGGCGCTCAGTCGGCCAAAGAGGCATAATGCATAAGCCAAGGATCAGCCCAG-CCCCCTTATGC
* *
26176815 ATGC-T-A-C-CGATCCTGCTACCACAACCCCCAATCCAATTAGGGCTTAGACGTGGAATGTACT
194 ATGCGTCACCTCGATCCTGCTACCACAACCCCCAATCCAACTAGGGCTTAGACATGGAATGTACT
* * * * * * **
26176876 CCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTC-AGTCGATTGGAGAGGCAGAAT
259 CCGTATGCCTAAGCCAACCCATGAAACGAACGTGCAGGCGCTCAACT-GACTAGAAAGAAAGAAT
* * * **
26176940 GCGTAATCTGAGGATCGGCCTGAT
323 GCGGAAGCCGAGGATCGGCCCAAT
* * ** *
26176964 CCCCCTTGTGTGCTACCGATCCTGCTACCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAAT
1 CCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGATC-GATCCAATCTTAGACTGGGAAT
* * *
26177029 GAACTCCGTAAGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
65 GAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
*
26177094 CGAGCGCTCAGTCG
130 CGGGCGCTCAGTCG
26177108 ACTAGAGAGG
Statistics
Matches: 412, Mismatches: 71, Indels: 21
0.82 0.14 0.04
Matches are distributed among these distances:
342 2 0.00
343 239 0.58
344 1 0.00
346 1 0.00
351 1 0.00
353 1 0.00
354 1 0.00
355 157 0.38
356 9 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (346 bp):
CCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGATCGATCCAATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
GGGCGCTCAGTCGGCCAAAGAGGCATAATGCATAAGCCAAGGATCAGCCCAGCCCCCTTATGCAT
GCGTCACCTCGATCCTGCTACCACAACCCCCAATCCAACTAGGGCTTAGACATGGAATGTACTCC
GTATGCCTAAGCCAACCCATGAAACGAACGTGCAGGCGCTCAACTGACTAGAAAGAAAGAATGCG
GAAGCCGAGGATCGGCCCAAT
Found at i:26177044 original size:26 final size:26
Alignment explanation
Indices: 26177015--26177064 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
26177005 CTGATCCGAT
26177015 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
* * *
26177041 CTTAGATTGGGGATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
26177065 TGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:26178806 original size:26 final size:26
Alignment explanation
Indices: 26178770--26178822 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26178760 CTGGTTTGAT
*
26178770 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26178796 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26178822 C
1 C
26178823 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26180377 original size:26 final size:26
Alignment explanation
Indices: 26180348--26180400 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26180338 CCGATCTGAT
26180348 CTTAGACTAG-GAATGAACTCCGTATG
1 CTTAGACT-GCGAATGAACTCCGTATG
*
26180374 CTTAGACTGCGGATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
26180400 C
1 C
26180401 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:26180451 original size:354 final size:354
Alignment explanation
Indices: 26179800--26180452 Score: 796
Period size: 354 Copynumber: 1.8 Consensus size: 354
26179790 CTGTGTGCTG
26179800 CCGGTCCTGCTACCACAACCCTCGATCTGACTGGGGCCTAGACATGGAATGAGCTCCCTATGCCT
1 CCGGTCCTGCTACCACAACCCTCGATCTGACTGGGGCCTAGACATGGAATGAGCTCCCTATGCCT
* ** * * ** * * *
26179865 AAGCCAACCCATGAAATGGGCGTGCAGGCGTTCAGCCGGTCGGAGAGGCAGAATGTGCAAGTTGG
66 AAGCCAACCCATGAAACGAACGTGCAGGCGCTCAACCGACCGGAAAGGCAGAATATGCAAGCTGG
* * * * * * * *
26179930 GGATCGACCCAGTCCCCCCTGCGTGCTGCCGATCCTGCTACCGTAACTCTCGGTCTGGTTCGATC
131 GGATCAACCCAGTCCCCCCTACGTGCTGCCGATCCTACTACCGAAACCCTCGATCCGATTCGATC
* *
26179995 TTAAACTATGAATGAACTCCATATGCTTAGATCAGGGATGAACTCTGTATGCCTAAGTCAACCCA
196 TTAAACTAGGAATGAACTCCATATGCTTAGATCAGGGATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
26180060 TGAAACGAGTGTACGAGCGCTTAGCCGGTCGGAGAGGCATAATGCGTAAGTCGAGGATCAGCTCG
261 CGAAACGAGCGTACGAGCGCTCAGCCGGCCAGAGAGGCATAATGCGTAAGTCGAGGATCAGCTCG
26180125 ATCCCCTCTGCGTGCTGCCGATCTCGCTA
326 ATCCCCTCTGCGTGCTGCCGATCTCGCTA
* * ** *
26180154 CCGGTCCTGCTACCACAACCCTCGGTC-GAATTGGGGTTTAGACATGGAATGTA-CTCCGTATGC
1 CCGGTCCTGCTACCACAACCCTCGATCTG-ACTGGGGCCTAGACATGGAATG-AGCTCCCTATGC
* *
26180217 CTAAGCCAACCCATGAAACGAACGTGCGGGTGCTCAACCGACCGGAAAGGCAGAATATGCAAGCT
64 CTAAGCCAACCCATGAAACGAACGTGCAGGCGCTCAACCGACCGGAAAGGCAGAATATGCAAGCT
** * * * * * **
26180282 GGGGATCAA-CTTGATCCCTCTTATGTGTTGTCGATCCTACTGTCGAAACCCTCGATCCGA-TCT
129 GGGGATCAACCCAG-TCCCCCCTACGTGCTGCCGATCCTACTACCGAAACCCTCGATCCGATTC-
* * * *
26180345 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGA-CTGCGGATGAACTCCGTATGCCTAAGTTA
192 GATCTTAAACTAGGAATGAACTCCATATGCTTAGATCAG-GGATGAACTCCGTATGCCTAAGTCA
*
26180409 ACCCACGAAACGAGCGTGC-AGGCGCTCAGCCGGCCAGAGAGGCA
256 ACCCACGAAACGAGCGTACGA-GCGCTCAGCCGGCCAGAGAGGCA
26180453 GGATGCGCAA
Statistics
Matches: 247, Mismatches: 46, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
353 8 0.03
354 238 0.96
355 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (354 bp):
CCGGTCCTGCTACCACAACCCTCGATCTGACTGGGGCCTAGACATGGAATGAGCTCCCTATGCCT
AAGCCAACCCATGAAACGAACGTGCAGGCGCTCAACCGACCGGAAAGGCAGAATATGCAAGCTGG
GGATCAACCCAGTCCCCCCTACGTGCTGCCGATCCTACTACCGAAACCCTCGATCCGATTCGATC
TTAAACTAGGAATGAACTCCATATGCTTAGATCAGGGATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTACGAGCGCTCAGCCGGCCAGAGAGGCATAATGCGTAAGTCGAGGATCAGCTCG
ATCCCCTCTGCGTGCTGCCGATCTCGCTA
Found at i:26181099 original size:25 final size:26
Alignment explanation
Indices: 26181071--26181122 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
26181061 GGCTCAAAAT
*
26181071 CTTAGAC-TGGGAATGAGCTCC-TATG
1 CTTAGACAT-GGAATGAACTCCGTATG
26181096 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26181122 C
1 C
26181123 ATAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26182551 original size:26 final size:26
Alignment explanation
Indices: 26182522--26182573 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26182512 TCCGGTCTGA
*
26182522 TCTTAGA-TTGGGAATGAACTCCGTAT
1 TCTTAGACTAGGG-ATGAACTCCGTAT
26182548 TCTTAGACTAGGGATGAACTCCGTAT
1 TCTTAGACTAGGGATGAACTCCGTAT
26182574 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (26 bp):
TCTTAGACTAGGGATGAACTCCGTAT
Found at i:26183561 original size:159 final size:159
Alignment explanation
Indices: 26183272--26183676 Score: 413
Period size: 159 Copynumber: 2.5 Consensus size: 159
26183262 TCGACATGGA
* * * * *
26183272 ATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGTCGGAGAGG
1 ATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGGTCGAAAAGG
* * * * **
26183337 TAGATTACGCAAGCCGAGGATCGACCCAGTCCCCCCCTACGTGCTGTCGATCTTGCTGCCACAAC
66 CAGAATACACAAGCCGAGGATCGACCCAGTCCCCCCCTACATGCTGTCGATCCCGCTGCCACAAC
26183402 CCTCAGTTTAATCTGATCTTAGACTGGGG
131 CCTCAGTTTAATCTGATCTTAGACTGGGG
* * *
26183431 ATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGAGCGCTGAGCCGGTCGAAAAGG
1 ATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGGTCGAAAAGG
* * * *
26183496 CAGAATGCACAAGCC-AGGGATCGACCTAGTCCCCCTCTACATGCTG-CTGGTCCCGCTGCCACA
66 CAGAATACACAAGCCGA-GGATCGACCCAGTCCCCCCCTACATGCTGTC-GATCCCGCTGCCACA
* *** ** *
26183559 ACCCTCGGTCCGA-CTGGGGCTTAGACAT-GGA
129 ACCCTCAGTTTAATCT-GATCTTAGAC-TGGGG
* ** * * * * * * *
26183590 ATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGAGTGCTCAACCGATCGGAGAGG
1 ATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGGTCGAAAAGG
* *
26183655 CAGAATTCACAAGCCGGGGATC
66 CAGAATACACAAGCCGAGGATC
26183677 AGCCGATCCT
Statistics
Matches: 201, Mismatches: 40, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
158 4 0.02
159 196 0.98
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.18
Consensus pattern (159 bp):
ATGAACTCTGTATGCATAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGGTCGAAAAGG
CAGAATACACAAGCCGAGGATCGACCCAGTCCCCCCCTACATGCTGTCGATCCCGCTGCCACAAC
CCTCAGTTTAATCTGATCTTAGACTGGGG
Found at i:26183751 original size:26 final size:26
Alignment explanation
Indices: 26183715--26183767 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26183705 TCGGTCCAAT
*
26183715 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
26183741 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
26183767 C
1 C
26183768 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:26184632 original size:12 final size:12
Alignment explanation
Indices: 26184615--26184643 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
26184605 GGGATAGGGA
26184615 GCCAATATAAGG
1 GCCAATATAAGG
26184627 GCCAATATAAGG
1 GCCAATATAAGG
26184639 GCCAA
1 GCCAA
26184644 GTACCAACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.41, C:0.21, G:0.24, T:0.14
Consensus pattern (12 bp):
GCCAATATAAGG
Found at i:26185359 original size:26 final size:26
Alignment explanation
Indices: 26185318--26185370 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26185308 CCGGTCTGAT
* *
26185318 CTTAGACTGGGAATGAAGTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
26185344 CTTAGACATGGG-ATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
26185370 C
1 C
26185371 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:26185715 original size:26 final size:27
Alignment explanation
Indices: 26185686--26185743 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
26185676 CCAGTCCGAT
26185686 CTTAGAC-CAGGAATGAACTCCGTATG-
1 CTTAGACTCAGG-ATGAACTCCGTATGC
* *
26185712 CTTAGACTGAGGATGAACTCTGTATGC
1 CTTAGACTCAGGATGAACTCCGTATGC
26185739 CTTAG
1 CTTAG
26185744 TCAACCTACG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 20 0.71
27 8 0.29
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACTCAGGATGAACTCCGTATGC
Found at i:26186780 original size:26 final size:26
Alignment explanation
Indices: 26186740--26186790 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26186730 CTATTCGATC
*
26186740 TTAGACTGGGAATGAACTCTGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
26186766 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
26186791 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:26188294 original size:26 final size:26
Alignment explanation
Indices: 26188258--26188310 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26188248 CTGGTGTGAT
*
26188258 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26188284 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
26188310 C
1 C
26188311 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26188661 original size:25 final size:25
Alignment explanation
Indices: 26188627--26188676 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
26188617 CGATCTGATC
*
26188627 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
*
26188652 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
26188677 CCTAAGTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (25 bp):
TTAGACTGGGAATGAACTCCATATG
Found at i:26189765 original size:158 final size:158
Alignment explanation
Indices: 26189459--26189758 Score: 336
Period size: 158 Copynumber: 1.9 Consensus size: 158
26189449 CGATATGCTT
* * * * **
26189459 AGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCTGGTGCTCAATCGA
1 AGATTGGGAATAAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCTGGCACTCAATCGA
* * * * *
26189524 CCGAAAAGGCAGAATGCGCAAGCTGGGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTACT
66 CCGAAAAGGCAGAATGCGCAAGCTGGGGATAGACCCGGTCCCCCCTACATGCTGCCAATCCCACT
*
26189589 GCCCCAACCCTCGATCCGGTCCGATCTC
131 GCCACAACCCTCGATCCGGTCCGATCTC
* * *
26189617 AGATTGGGAATAAACTCCGTATGCATATGTCAACCCACAAAACGAGC-TGC-GAGCACTGAGTCG
1 AGATTGGGAATAAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCTG-GCACTCAATCG
* * * * * ** *
26189680 GCTGAAGATGCATAATGCGCAAGCTGGGGATTAG-CCCGGTCCCCCACTATGTGTTGCCAATCCC
65 ACCGAAAAGGCAGAATGCGCAAGCTGGGGA-TAGACCCGGTCCCCC-CTACATGCTGCCAATCCC
*
26189744 GCTGCCACAACCCTC
128 ACTGCCACAACCCTC
26189759 AGTCCGGCTG
Statistics
Matches: 115, Mismatches: 24, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
156 1 0.01
157 46 0.40
158 68 0.59
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (158 bp):
AGATTGGGAATAAACTCCGTATGCATAAGTCAACCCACAAAACGAGCGTGCTGGCACTCAATCGA
CCGAAAAGGCAGAATGCGCAAGCTGGGGATAGACCCGGTCCCCCCTACATGCTGCCAATCCCACT
GCCACAACCCTCGATCCGGTCCGATCTC
Found at i:26190314 original size:26 final size:26
Alignment explanation
Indices: 26190285--26190337 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26190275 CCGGTTTGAT
26190285 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
26190311 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26190337 C
1 C
26190338 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26190673 original size:26 final size:26
Alignment explanation
Indices: 26190644--26190693 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26190634 GTCCGATCTC
26190644 AGACTAGGAATGAACTCTGTATGCTT
1 AGACTAGGAATGAACTCTGTATGCTT
* *
26190670 AGACTGGGGATGAACTCTGTATGC
1 AGACTAGGAATGAACTCTGTATGC
26190694 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
AGACTAGGAATGAACTCTGTATGCTT
Found at i:26191296 original size:11 final size:11
Alignment explanation
Indices: 26191280--26191327 Score: 60
Period size: 11 Copynumber: 4.4 Consensus size: 11
26191270 GCTCTCTGGT
*
26191280 GATGCTCCGGC
1 GATGCTCCGAC
26191291 GATGCTCCGAC
1 GATGCTCCGAC
* *
26191302 GATGGTCCGGC
1 GATGCTCCGAC
*
26191313 AATGCTCCGAC
1 GATGCTCCGAC
26191324 GATG
1 GATG
26191328 GTGCCCTGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (11 bp):
GATGCTCCGAC
Found at i:26191310 original size:22 final size:22
Alignment explanation
Indices: 26191280--26191329 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
26191270 GCTCTCTGGT
* *
26191280 GATGCTCCGGCGATGCTCCGAC
1 GATGGTCCGGCAATGCTCCGAC
26191302 GATGGTCCGGCAATGCTCCGAC
1 GATGGTCCGGCAATGCTCCGAC
26191324 GATGGT
1 GATGGT
26191330 GCCCTGGGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.16, C:0.30, G:0.34, T:0.20
Consensus pattern (22 bp):
GATGGTCCGGCAATGCTCCGAC
Found at i:26192305 original size:26 final size:26
Alignment explanation
Indices: 26192264--26192316 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26192254 CCGGTCTAAT
* *
26192264 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
*
26192290 CTTAGACGGGGGATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
26192316 C
1 C
26192317 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:26192382 original size:368 final size:368
Alignment explanation
Indices: 26191845--26192614 Score: 886
Period size: 368 Copynumber: 2.1 Consensus size: 368
26191835 GATCGGCCAA
* * * *
26191845 TCCCCCTTGCGTGCTGCTGAT-CTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAA
1 TCCCCCCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAA
* **
26191909 TGAACTACATATGCTTAGACTGGGGATGAACACCGTATGCCTAAGTTAACCCACGAAACGAGCGT
66 TGAACTACATATGCTTAGACGGGGGATGAACACCGTATGCCTAAGCCAACCCACGAAACGAGCGT
** * * * * * * * *
26191974 GTGGGCGCTCAGGCAGCCAGAGAGGTTGATCAAAGAGGCATAATGCA-CAAGTCGGGGATCAGCT
131 GCAGGCGCTCAGCCAACCAGAAAGGTCGACCAAAGAGGCATAATG-AGCAAGCCAGGGATCAGCC
* * * * * * *
26192038 CGATCCCCTTCTACGTTCCACCAATCCCGCTGCCGGTCCTGCTGCCACAACCCCCGATCCGGTTG
195 CGATCCCCCTCTACGTGCCACCAATCCCGCTGCCAGTCCTGCTACCACAACCACAGATCCGGCTG
** * * * ** *
26192103 -GGGCTTAGATGTTGAATGTACTTCGTATGCCTAAGCCAACCCGCGAAATGAGTGTGCAGGTGCT
260 CGGG-TTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCT
** *
26192167 CAGGC-GACCGGAGAGACAGAATGCACAAG-CCGATGATCGACCCGG
324 CAACCAG-CCGGAGAGACAGAATACACAAGTCCGA-GATCGACCCGG
* * * * *
26192212 TCCCTCCTACTTGCTGCCGATCCTGCTGTCGCAACCCTCGATCCGGTCTAATCTTAGACTGGGAA
1 TCCCCCCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAA
* * * *
26192277 TGAACT-CTGTATGCTTAGACGGGGGATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCG
66 TGAACTAC-ATATGCTTAGACGGGGGATGAACACCGTATGCCTAAGCCAACCCACGAAACGAGCG
**
26192341 TGCAGGCGCTCAGCCAACCAGAAAGGTCGACCGGAGAGGCATAATGAGCAAGCCAGGGATCAGCC
130 TGCAGGCGCTCAGCCAACCAGAAAGGTCGACCAAAGAGGCATAATGAGCAAGCCAGGGATCAGCC
*** * * ** * * *
26192406 CGATCCCCCTCTACGTGCTGTCGATCCCGCTGCCAGTCCTGCTATCATGACCATAGGTTCGGCTG
195 CGATCCCCCTCTACGTGCCACCAATCCCGCTGCCAGTCCTGCTACCACAACCACAGATCCGGCTG
* **
26192471 CGGGTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGTGCTC
260 CGGGTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTC
* * *
26192536 AACCAGCCGGAGAGGCAGAATACGCAAGTCGGAGATCGACCCGG
325 AACCAGCCGGAGAGACAGAATACACAAGTCCGAGATCGACCCGG
*
26192580 TCCCCCCTACGTGCTGCCGATCCTGCTACCGCAAC
1 TCCCCCCTACGTGCTGCCGATCCTGCTGCCGCAAC
26192615 GTTCATCCGA
Statistics
Matches: 331, Mismatches: 66, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
367 18 0.05
368 306 0.92
369 7 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (368 bp):
TCCCCCCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAA
TGAACTACATATGCTTAGACGGGGGATGAACACCGTATGCCTAAGCCAACCCACGAAACGAGCGT
GCAGGCGCTCAGCCAACCAGAAAGGTCGACCAAAGAGGCATAATGAGCAAGCCAGGGATCAGCCC
GATCCCCCTCTACGTGCCACCAATCCCGCTGCCAGTCCTGCTACCACAACCACAGATCCGGCTGC
GGGTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCAGGTGCTCA
ACCAGCCGGAGAGACAGAATACACAAGTCCGAGATCGACCCGG
Found at i:26192624 original size:25 final size:26
Alignment explanation
Indices: 26192596--26192652 Score: 89
Period size: 25 Copynumber: 2.2 Consensus size: 26
26192586 CTACGTGCTG
26192596 CCGATCCTGCTACCGCAACGTTC-AT
1 CCGATCCTGCTACCGCAACGTTCGAT
* *
26192621 CCGATCTTGCTACCGTAACGTTCGAT
1 CCGATCCTGCTACCGCAACGTTCGAT
26192647 CCGATC
1 CCGATC
26192653 TGATCTTAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 21 0.72
26 8 0.28
ACGTcount: A:0.19, C:0.37, G:0.18, T:0.26
Consensus pattern (26 bp):
CCGATCCTGCTACCGCAACGTTCGAT
Found at i:26193757 original size:159 final size:157
Alignment explanation
Indices: 26193413--26193915 Score: 516
Period size: 158 Copynumber: 3.2 Consensus size: 157
26193403 AGTTCCATAT
* * * *
26193413 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTTAACCCATAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * * * * * * *
26193478 TCGATCGGAGAGGCAGAATGCGTGAGTCAGGGATC-GACCCGATGCCCCCAGCGTGCTTTCGATC
66 CCG-CCGAAGAGGCAGAATGCGTAAGCCAGGGATCAG-CCCGGTCCCCCCTGCGTGCTATCGATC
*
26193542 CTGCTGCCGCAACCCTCGGTCTGGTTCCA
129 CTGCTACCGCAACCCTCGGTCTGGTTCCA
* *
26193571 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * *
26193635 GCCAGCCGAAGAGGCATAATTCGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCATGCTGTCGAT
65 GCC-GCCGAAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGGTCCCCC-CTGCGTGCTATCGAT
* ***
26193700 -CTCGCTACCACAACCCTCGGTCTGGTTGGG
128 CCT-GCTACCGCAACCCTCGGTCTGGTTCCA
* * * * *
26193730 GCTTAGACATGGAATGAGCTCCCTATGCCAT-AGCCAACCCACGAAACGGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATG-CATAAGTCAACCCATGAAACGAGCGTGCGGGCACTCA
* * *
26193794 GCCGGCCGGAA-AGGCAGAATGCGTAAGCCAGGGATCAGCACGGTCCCCCCTACGTGCTACCGAT
65 GCC-GCC-GAAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGAT
*
26193858 CCTACTACCGCAACCCTCGGTCTGG-TCCAA
128 CCTGCTACCGCAACCCTCGGTCTGGTTCC-A
* * *
26193888 TCTTAGA-TTGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
26193916 TTAGACTGAG
Statistics
Matches: 282, Mismatches: 52, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.01
158 143 0.51
159 128 0.45
160 7 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGCCGAAGAGGCAGAATGCGTAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCT
GCTACCGCAACCCTCGGTCTGGTTCCA
Found at i:26194551 original size:368 final size:366
Alignment explanation
Indices: 26193703--26194569 Score: 1051
Period size: 368 Copynumber: 2.4 Consensus size: 366
26193693 TGTCGATCTC
* * *
26193703 GCTACCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATG-AGCTCC-CTATGCCATAGCCA
1 GCTACCACAACCCTCGGTCT-GATGGGGCTTAGACGTGGAATGTA-CTCCGC-ATGCCTTAGCCA
* ** * * *
26193766 ACCCACGAAACGGGCGTGCGGGCACTCAGCCGGCCGGAAAGGCAGAATGCGTAAGCCAGGGATCA
63 ACCCATGAAACAAGCGTGCGGGCACTCAGCC-GCTGGAGAGGCAGAATGCGTAAGCCAGGGATCG
* * * * ** *
26193831 GCACGGTCCCCCCTACGTGCTACCGATCCTACTACCGCAACCCTCGGTCTGGTCCAATCTTAGAT
127 GCCCGGTCCCCCCTACGTGCTACCAATCCCACTACCGCAACCCTCGATCCAGTCCAATCTTAGAC
* * * *
26193896 TGGGAATGAACTCTGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
192 TGGAAATGAACTCTGTATGCTTAGACTGAGGATGAACTCCATATGCCTAAGTAAACCCACAAAAC
* * * * * ** * *
26193961 GAGCGTGCTGGCGCTCAGCTGACCGGAGAGGCAGGCCGGAGAGGCATAATGCGTAAGTCGGGGTT
257 GAGCGTGCGGGCGCTCAGCCGACCAGAGAGGCAGACCGGAGACGCATAATGCACAAGCCGGGGAT
* *
26194026 CAGCCCAGTCCCCTTCTGCATGCTATCGATCCCACTGCCGGTCCT
322 CAGCCCAGTCCCCCTCTGCATGCTATCGATCCCACTACCGGTCCT
* * * *
26194071 GCTACCACAACCCTCGGTATAGATGGGGCTTAGGCGTGGAATGTACTCCGTATGCCTAAGCCAAC
1 GCTACCACAACCCTCGGTCT-GATGGGGCTTAGACGTGGAATGTACTCCGCATGCCTTAGCCAAC
* * * **
26194136 CCATGAAACAAGCGTGCGGGCACTCAGACGGTCGGAGAGGTAGAATGCACAAGCCAGGGATCGGC
65 CCATGAAACAAGCGTGCGGGCACTCAGCCGCT-GGAGAGGCAGAATGCGTAAGCCAGGGATCGGC
* * * * **
26194201 CCGTTCCCTCCTACGTGCTACCAATCCCCCTACCGCAACCCTTGATCCAGTCTGATCTTAGACTG
129 CCGGTCCCCCCTACGTGCTACCAATCCCACTACCGCAACCCTCGATCCAGTCCAATCTTAGACTG
* * *
26194266 GAAATGAACT-TCGTATGCTTAGATTGGGGATGAACTCTATATGCCTAAGTAAACCCACAAAACG
194 GAAATGAACTCT-GTATGCTTAGACTGAGGATGAACTCCATATGCCTAAGTAAACCCACAAAACG
* * *
26194330 AGCGTGCGGGCGCTCATCCGGCCATAGAGGCCA-ACCGGAGACGCATAATGCACAAGCCGGGGAT
258 AGCGTGCGGGCGCTCAGCCGACCAGAGAGG-CAGACCGGAGACGCATAATGCACAAGCCGGGGAT
** *
26194394 CAGCCC-GATCCCCCTCTGTGTGCTGTCGATCCCACTACCGGTCCT
322 CAGCCCAG-TCCCCCTCTGCATGCTATCGATCCCACTACCGGTCCT
26194439 GCTACCACAACCCTCGGTCTGACTGGGGCTTAGACGTGGAATGTACTCCGCATGCCTTAGCCAAC
1 GCTACCACAACCCTCGGTCTGA-TGGGGCTTAGACGTGGAATGTACTCCGCATGCCTTAGCCAAC
** * * * *
26194504 CCATGAAACTTGAGTGCGGGCACTCATCCGACTGGAGAGACAGAATGCGTAAGCCGGGGATCGGC
65 CCATGAAACAAGCGTGCGGGCACTCAGCCG-CTGGAGAGGCAGAATGCGTAAGCCAGGGATCGGC
26194569 C
129 C
26194570 TAGTCTCCTC
Statistics
Matches: 420, Mismatches: 71, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
367 5 0.01
368 411 0.98
369 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (366 bp):
GCTACCACAACCCTCGGTCTGATGGGGCTTAGACGTGGAATGTACTCCGCATGCCTTAGCCAACC
CATGAAACAAGCGTGCGGGCACTCAGCCGCTGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCC
GGTCCCCCCTACGTGCTACCAATCCCACTACCGCAACCCTCGATCCAGTCCAATCTTAGACTGGA
AATGAACTCTGTATGCTTAGACTGAGGATGAACTCCATATGCCTAAGTAAACCCACAAAACGAGC
GTGCGGGCGCTCAGCCGACCAGAGAGGCAGACCGGAGACGCATAATGCACAAGCCGGGGATCAGC
CCAGTCCCCCTCTGCATGCTATCGATCCCACTACCGGTCCT
Found at i:26195647 original size:158 final size:157
Alignment explanation
Indices: 26195245--26195747 Score: 431
Period size: 158 Copynumber: 3.2 Consensus size: 157
26195235 GAGCTCCTAT
* * * *
26195245 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACACATGGAACGAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * *
26195310 CCGGCCGGAGAGGTAGAATGCACAAGCCGGGGATCAACCTGATCCCCCCTACGTGCTATCGATCC
66 CCGGCC-GAGAGGCAGAATGCGCAAGCCGAGGACCAACCCGATCCCCCCTACGTGCTATCGATCC
* * * *
26195375 TGCTATCGTAATCCTCGGTCCGGTCTGA
130 CGCTACCATAACCCTCGGTCCGGTCTGA
* * * * * * * *
26195403 TCTTACAC-TGGGAATGAACTTCCGTATGCATAAG-TCAACCCACGAAACGACCGTACAGGCACT
1 GCTTAGACAT-GGAATGAGC-TCCGTATGCCTAAGCT-AACCCATGAAACGAGCGTACGGGCGCT
* * * * * ** *
26195466 GAGCCGGCCGAAGAGGCATAATGCGCAATCCGAGGACCGACCCGATCCACCTCTGGGTGCTGTCG
63 CAGCCGGCCG-AGAGGCAGAATGCGCAAGCCGAGGACCAACCCGATCC-CCCCTACGTGCTATCG
* * * *
26195531 -TCCCGTTGCCATGACCCTCGGTCCGG-CTGGG
126 ATCCCGCTACCATAACCCTCGGTCCGGTCT-GA
* *
26195562 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * * * *
26195627 TCGGCCAGAGAGGCAGAATGCGTAAGCCGAGGATCAACTCGATCCCCACTATGTGCTGTCGATCC
66 CCGGCC-GAGAGGCAGAATGCGCAAGCCGAGGACCAACCCGATCCCCCCTACGTGCTATCGATCC
* * ** * * *
26195692 TGCTATCGCAACCCTCGATTCGATCTGA
130 CGCTACCATAACCCTCGGTCCGGTCTGA
* *
26195720 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAGCTCCGTATGC
26195748 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 68, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
157 15 0.06
158 129 0.49
159 108 0.41
160 13 0.05
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTACGGGCGCTCAG
CCGGCCGAGAGGCAGAATGCGCAAGCCGAGGACCAACCCGATCCCCCCTACGTGCTATCGATCCC
GCTACCATAACCCTCGGTCCGGTCTGA
Found at i:26195757 original size:26 final size:26
Alignment explanation
Indices: 26195721--26195773 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26195711 TCGATCTGAT
26195721 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26195747 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26195773 C
1 C
26195774 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26196125 original size:26 final size:26
Alignment explanation
Indices: 26196089--26196141 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26196079 CTGATCTGAT
26196089 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26196115 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26196141 C
1 C
26196142 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26196354 original size:367 final size:367
Alignment explanation
Indices: 26195544--26196910 Score: 1884
Period size: 367 Copynumber: 3.7 Consensus size: 367
26195534 CGTTGCCATG
* * * *
26195544 ACCCTCGGTCCGGCTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCTAACCCATGAAA
1 ACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCT-AGCCAACCCACGAAA
* * ** ** * * *
26195608 CGAGCGTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGCGTAAGCCGAGGATCAACTCGATCCC
64 CGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTGCC
* * * * * *
26195673 CACTATGTGCTGTCGATCCTGCTATCGCAACCCTCGATTCGATCTGATCTTAGACTGGGAATGAA
129 CTCTACGCGCTGCCGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAA
* *
26195738 CTCCGTATGCTTAGACTGGGGATGAATTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGG
194 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * *
26195803 ACGTTCAGCCTGTCGGAGAGGCCGATCGGAGACGCATAATGCATAAGCCGGAGGTCAATCCGATC
259 ACGCTCAGCCTGCCGGAGAGGCCGATCGGAGAGGCATAATGCGTAAGCCGGAGATCAATCTGATC
* * *
26195868 CCCCTCTACGTGCTGCCAATCCTGCTATCGGTCCTACTGCCATA
324 CCCCTCTACGTGCTGCCAATCCCGCTATCGGTCCTGCTGCCACA
* * * *
26195912 ACCCTCGATCCAACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAATCCAACCCACGAAAT
1 ACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCT-AGCCAACCCACGAAAC
** * *
26195977 GAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCTGGT-CCC
65 GAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTGCCC
* * * *
26196041 TACTACGTGCTGCCGATCCTGCTAACGTAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAA
130 T-CTACGCGCTGCCGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAA
*
26196106 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA-CCACGAAACGAGCGTACGG
194 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * * *
26196170 ATGCTCAGCCTACCGGAGAGGTCGATCAGAGAGGCATAATGCGCAAGCCAGAGATCAGTCTGATC
259 ACGCTCAGCCTGCCGGAGAGGCCGATCGGAGAGGCATAATGCGTAAGCCGGAGATCAATCTGATC
26196235 CCCCTCTACGTGCTGCCAATCCCGCTATCGGTCCTGCTGCCACA
324 CCCCTCTACGTGCTGCCAATCCCGCTATCGGTCCTGCTGCCACA
** * *
26196279 ACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTACTCCGTGTGCCTAGCCCAACCCACGAAAC
1 ACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAG-CCAACCCACGAAAC
* * * * *
26196344 GAGCGTGCGGGTGCTCAGTCGG-CCGAAAGGCAGAATGCACAAGTCGGGGATCGGCCCGGTGCGC
65 GAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTGC-C
* * * * *
26196408 CT-TGCGCGCTGTCGATCCTACTGCCGCAACCTTCGATCCGATCTGATCTTAGACTGGGAATGAA
129 CTCTACGCGCTGCCGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAA
* *
26196472 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGG
194 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* *
26196537 GCGCTCAGCTTGCCGGAGAGGCCGATCGGAGAGGCATAATGCGTAAGCCGGAGATCAATCTGATC
259 ACGCTCAGCCTGCCGGAGAGGCCGATCGGAGAGGCATAATGCGTAAGCCGGAGATCAATCTGATC
*
26196602 CCCCTCTACGTGCTGCCAATCCCGCTATCGGTCTTGCTGCCACA
324 CCCCTCTACGTGCTGCCAATCCCGCTATCGGTCCTGCTGCCACA
* **
26196646 ACCCTCGGTCCAGCTGGGGCTTAGACGTGGAATGTACTCTATATGCCTAGGCCAACCCAC-AAAC
1 ACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTA-GCCAACCCACGAAAC
* * * *
26196710 GAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATTGGCCCGGTGCCC
65 GAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTGCCC
* * * *
26196775 -CTTACGCGTTGCCGATCCTGCTACCGTAACCCTCGATCCGATCTAATCTTAGACTGAGAATGAA
130 TC-TACGCGCTGCCGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAA
26196839 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
194 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
*
26196904 GCGCTCA
259 ACGCTCA
26196911 ACCGACCAGA
Statistics
Matches: 885, Mismatches: 104, Indels: 21
0.88 0.10 0.02
Matches are distributed among these distances:
366 160 0.18
367 515 0.58
368 209 0.24
369 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (367 bp):
ACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAGCCAACCCACGAAACG
AGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCGGTGCCCT
CTACGCGCTGCCGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACT
CCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGAC
GCTCAGCCTGCCGGAGAGGCCGATCGGAGAGGCATAATGCGTAAGCCGGAGATCAATCTGATCCC
CCTCTACGTGCTGCCAATCCCGCTATCGGTCCTGCTGCCACA
Found at i:26196484 original size:26 final size:26
Alignment explanation
Indices: 26196455--26196507 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26196445 CCGATCTGAT
26196455 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26196481 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26196507 C
1 C
26196508 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26196851 original size:26 final size:26
Alignment explanation
Indices: 26196822--26196874 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26196812 CCGATCTAAT
26196822 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
26196848 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
26196874 C
1 C
26196875 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:26197593 original size:26 final size:26
Alignment explanation
Indices: 26197555--26197607 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26197545 GGCTCAAAAT
* *
26197555 CTTAGACTAGGAATGAGCTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26197581 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
26197607 C
1 C
26197608 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26197954 original size:159 final size:160
Alignment explanation
Indices: 26197580--26197961 Score: 394
Period size: 159 Copynumber: 2.4 Consensus size: 160
26197570 AGCTTCGTAT
*
26197580 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACTATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** *
26197644 GTCGGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCCCCATGCATGCTGTCGAT
66 GCCAGCCAAAGAGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCCCCATGCATGCTGCCGAT
* * ** * *
26197709 CCTACTGCTGCAACCCTCGGTCCGGTCTAA
131 CCCACTACCACAACCCTCGATCAGGTCTAA
* ** * * * *
26197739 TCTTAGACTA-GGAATGAACTCCGTATGCAGAACTCAACCCACAAAACGAGTGTGCGGGCGCTGA
1 GCTTAGACTATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * **** *
26197803 GCCAGCCAAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCAGTCCCTTTTTGCATGCTGCCGGT
66 GCCAGCCAAAGAGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCCCCATGCATGCTGCCGAT
* **
26197868 CCCGCTACCACAACCCTCGATCAGG-CTGGG
131 CCCACTACCACAACCCTCGATCAGGTCT-AA
* * * * * * *
26197898 GCTTGGA-TATGGAACGAGCTCCCTATGCCTAAGTCAACCCACGAAACGGGCATGCGGGGGCTCA
1 GCTTAGACTATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
26197962 CCCGATCGGA
Statistics
Matches: 176, Mismatches: 44, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
158 4 0.02
159 171 0.97
160 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (160 bp):
GCTTAGACTATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCCAGCCAAAGAGGCAGAATGCACAAGTCGGGGATCGACCCAGTCCCCCCATGCATGCTGCCGAT
CCCACTACCACAACCCTCGATCAGGTCTAA
Found at i:26198107 original size:26 final size:26
Alignment explanation
Indices: 26198057--26198109 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26198047 CCAGTCCGAT
**
26198057 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26198083 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26198109 C
1 C
26198110 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26198414 original size:159 final size:158
Alignment explanation
Indices: 26198082--26198425 Score: 403
Period size: 159 Copynumber: 2.2 Consensus size: 158
26198072 AACTTTGTAT
* * * *
26198082 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAACAGCGTGCGGGCACTCAA
1 GCTTAGACTAGGAATGAACTCCGTATCCCTAAGACAACCCATGAAAACAGCGTGCGGGCAC-CAA
** * * *
26198147 CCGACTGGAGAGGCATAATACGTAAGCCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCGATC
65 CCGACCAGAGAGGCAGAATACGCAAGCCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGATC
*
26198212 CTGCTGCCACAACCCTCAGTCCGATTGGG
130 CTGCTGCCACAACCCTCAGTCCGATTGGA
* *
26198241 GCTTAAAC-ATGGAATGTACTCCGTATCCCTAAGACAACCCATG-AAACGAGCGTGCAGGTGCA-
1 GCTTAGACTA-GGAATGAACTCCGTATCCCTAAGACAACCCATGAAAAC-AGCGTGC-GG-GCAC
* * *
26198303 CAACCGGCCAGAGAGGCAGAATGCGCAAGCCAAGGGATCA-CCTCGGTCCCCC-CTGCGTGCTAC
62 CAACCGACCAGAGAGGCAGAATACGCAAGCC-AGGGATCAGCC-CAGTCCCCCTCTGCGTGCTAC
* * *
26198366 TGATCCTGCTGCCACAACCCTC-GATCCGGTTTGA
125 CGATCCTGCTGCCACAACCCTCAG-TCCGATTGGA
*
26198400 TCTTAGACTAGGAATGAACTCCGTAT
1 GCTTAGACTAGGAATGAACTCCGTAT
26198426 GCTTAGACTG
Statistics
Matches: 156, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
158 5 0.03
159 129 0.83
160 19 0.12
161 3 0.02
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (158 bp):
GCTTAGACTAGGAATGAACTCCGTATCCCTAAGACAACCCATGAAAACAGCGTGCGGGCACCAAC
CGACCAGAGAGGCAGAATACGCAAGCCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGATCC
TGCTGCCACAACCCTCAGTCCGATTGGA
Found at i:26198430 original size:26 final size:26
Alignment explanation
Indices: 26198401--26198451 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26198391 CCGGTTTGAT
26198401 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
26198427 CTTAGACTGGGGATGAACTTCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
26198452 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26199713 original size:26 final size:26
Alignment explanation
Indices: 26199675--26199724 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
26199665 GGCTTAAAAT
*
26199675 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26199701 CTTAGACAT-GGAATGAACTCCGTA
1 CTTAGAC-TGGGAATGAACTCCGTA
26199725 CGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26200115 original size:158 final size:157
Alignment explanation
Indices: 26199700--26200135 Score: 409
Period size: 158 Copynumber: 2.8 Consensus size: 157
26199690 AGCTCCGTAT
* * * * *
26199700 GCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACGAAACGAACGTACGGGCGCTCAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCC-ACCCACGAAACGAGCGTGCGGGTGCTCAG
* * *
26199765 TCGGTCAGAGAGGCAGAATGCACAAGCTGGGGATCGACCTGGTCCCCCCTGCATGTCGTTGATCC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGGTCCCCCCTGCATGTCGTTGATCC
*
26199830 TGCTGCCACAACCCTAGATCCGGTCCGA
130 CGCTGCCACAACCCTAGATCCGGTCCGA
* * * * * * *
26199858 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCATGCGGGTGCTGAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAG-CCACCCACGAAACGAGCGTGCGGGTGCTCAG
** * * * * *
26199923 CCGACCGAAGAGGC-GTAATGCGCAAGTCAT--GGATCG-GCTCGGTTCCCCTCTGCGTG-CTTC
65 CCGGTCGGAGAGGCAG-AATGCGCAAG-C-TGGGGATCGACCT-GG-TCCCCCCTGCATGTCGT-
* * * * * *
26199983 TGGTCCCGCTGCCACAACCCTTGGTCTGG-CTGGG
124 TGATCCCGCTGCCACAACCCTAGATCCGGTC-CGA
* * * * *
26200017 GCTTAGACTTCGAATGAGA-TCCCTATGCCTAAGCCACCCATGAAACGAGTGTGCGGGTGCTCAA
1 GCTTAGACTTGGAATGA-ACTCCGTATGCCTAAGCCACCCACGAAACGAGCGTGCGGGTGCTCAG
* *
26200081 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCCTGCATG
65 CCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGGTCCCCCCTGCATG
26200136 CTACCAATCC
Statistics
Matches: 216, Mismatches: 49, Indels: 27
0.74 0.17 0.09
Matches are distributed among these distances:
156 1 0.00
157 15 0.07
158 132 0.61
159 66 0.31
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGGTCCCCCCTGCATGTCGTTGATCCC
GCTGCCACAACCCTAGATCCGGTCCGA
Found at i:26201155 original size:26 final size:26
Alignment explanation
Indices: 26201126--26201178 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26201116 GGCTCAAAAT
* *
26201126 CTTAGGCTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26201152 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26201178 C
1 C
26201179 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26201992 original size:157 final size:158
Alignment explanation
Indices: 26201687--26202017 Score: 377
Period size: 157 Copynumber: 2.1 Consensus size: 158
26201677 TTAGATGTCG
* * ** ** *
26201687 AATGTACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGTCGATCGAAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGAACTCAACCGACCGAAGAG
* * * * * *
26201752 GTAGAATGCACAAGCTGGGGATTGGCTCGGTCCCCTCTGCGTGCTGCTGATCCTGCTACCGCAAC
66 GCAGAACGCACAAGCTGGGGATCGGCCCGATCCCCTCTACGTGCTGCTGATCCTGCTACCGCAAC
*
26201817 TCTCGATCCAGTCTGATCTTAGACTGGA
131 CCTCGATCCAGTCTGATCTTAGACTGGA
* *
26201845 AATGAACTCCGTATGCCTATGTCAACCCATGAAACGAGCGTGC-GGAAACTCAACC-AGCCGAA-
1 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGG-AACTCAACCGA-CCGAAG
* **
26201907 AGGCAGAACGCACAAGCTGGGGATCGGCCCGATCCCAC-CTACGTGTTG-TCGATCCTGCTGTCG
64 AGGCAGAACGCACAAGCTGGGGATCGGCCCGATCCC-CTCTACGTGCTGCT-GATCCTGCTACCG
** *
26201970 CAACCCTCGATCTGGT-TCGATCTTAGACTGGG
127 CAACCCTCGATCCAGTCT-GATCTTAGACTGGA
26202002 AATGAACTCCGTATGC
1 AATGAACTCCGTATGC
26202018 TTGGACTATG
Statistics
Matches: 146, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
156 2 0.01
157 95 0.65
158 49 0.34
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGAACTCAACCGACCGAAGAG
GCAGAACGCACAAGCTGGGGATCGGCCCGATCCCCTCTACGTGCTGCTGATCCTGCTACCGCAAC
CCTCGATCCAGTCTGATCTTAGACTGGA
Found at i:26203065 original size:26 final size:26
Alignment explanation
Indices: 26203019--26203071 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26203009 CTGACCCGAT
**
26203019 CTTAGACTAGGAATGCGCTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
26203045 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
26203071 C
1 C
26203072 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:26204149 original size:26 final size:26
Alignment explanation
Indices: 26204120--26204172 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26204110 CCGGTCTGAT
26204120 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26204146 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26204172 C
1 C
26204173 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26204288 original size:738 final size:708
Alignment explanation
Indices: 26202841--26204554 Score: 1669
Period size: 738 Copynumber: 2.4 Consensus size: 708
26202831 CGGCTACCAG
* ** * *
26202841 AACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAA
* * * * *
26202906 CGGGCATGCGGGCGCTCAGTCGATC-GAAAAGGTAGAATACGAAAGCCGAGGATCGGCCCGGTCC
66 TGAGCGTGCGGGCGCTCAGCCGATCAG-AAAGGTAGAATACGAAAGCCG-GGATCAGCCCGGTCC
* * * * * *
26202970 CCTCTACGTGCTGCTGATCCTGTTATCGCAACCCTCGGTCTGACCCGATCTTAGACTAGGAATGC
129 CCCCT-TGTGCTGCCGATCCTGCT-TCGCAACCCTC-GTCTGATCCGATCTTAGACTAGGAATGA
* * * * *
26203035 GCTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGTA
191 ACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATA
* * * * *
26203100 GGCGTTCAGTCGGCCAGAAAGGCCGGAGAGGCATAATGCCCACGCCGGGGATCAGCCCGATCCCC
256 GGCGCTCAGCCGGCCAGAAAGGCCGGAGAGGCATAATGCCCAAGCCGAGGATCAACCCGATCCCC
* * *
26203165 CTCTGCGTGCTGTCGATCCTACTGCCGGTCCTGCTCCACAACCCTCAGTCCAGCTGTGGCTTAGA
321 CTCTACATGCTGTCGATCCTACTGCCAGTCCTGCTCCACAACCCTCAGTCCAGCTGTGGCTTAGA
* * * * * *
26203230 TGTGGAATGTACTCCATATGCCTAAGCTAACCCACGAAATGAGAGTACGGGCACTCAGCCGGCCT
386 CGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAACGAGAGTA-GGGCACTCAACCGACCG
* * * * *
26203295 GAAAGGCAGAATGCACAAGTCGAGGATCGGCTCGATCCCCTCTGCGTGCTGTCGATCCTGCTACT
450 GAAAGGCAGAATGCACAAGTAGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTACC
** *
26203360 GCAACCCTTGATCCAATTCAATCTTTGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
515 GCAACCCTCAATCCAATTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
* *
26203425 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTTAACTGACCGGAGAGCCCTAT
580 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGAGGACGCTT-ACAGACC-G-GAG-CCTA-
* * *
26203490 CGGAGAGGCATAATACGTAAGCCAGGGATCAGCCTGATCCCCTTCTATGTGCTATCGATCCCGTT
640 C-GAGAGGCATAAGACGTAAGCCAGGGATCAGCCCGATCCCCTTCTACGTGCTATCGAT-CC--T
26203555 GCCAGTCCTACTGCCAC
701 ----G---T--TGCCAC
* *
26203572 AACCCTCAGTCTGGCTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCATAAAA
1 AACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAA
* * * * * * * *
26203637 TGAGTGTGCAGGTGCTCAGCCGACCAGAGAGGCAGAATACGTAAGCCGGGATTAGCCCGGTCCCC
66 TGAGCGTGCGGGCGCTCAGCCGATCAGAAAGGTAGAATACGAAAGCCGGGATCAGCCCGGTCCCC
* * * * * *
26203702 CCTGTATGCTACCGATCTTACTGTCGCAACCCTCAGTCTGATCCAATCTTAGACTGGAGAACTTG
131 CCT-TGTGCTGCCGATCCTGCT-TCGCAACCCTC-GTCTGATCCGATCTTAGACTAG-GAA--TG
* * * *
26203767 AACTCCGTATGCTTAGACTAGGGATAAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTAT
190 AACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTAT
* * * * ** * *
26203832 GGGTGCTCAGCCGGTCGGAGTGGCCAATCGGGGAGGCATAATGCGCAAGCCGAGGATCAACCCGA
255 AGGCGCTCAGCCGGCCAGAAAGG-C---CGGAGAGGCATAATGCCCAAGCCGAGGATCAACCCGA
* * * *
26203897 TCCCTCTTTACATGCTGTCGATCTTGCTGCCAGTCCTGCTGCCACAACCCTC-GATCC-GACTAG
316 TCCCCCTCTACATGCTGTCGATCCTACTGCCAGTCCTGCT-CCACAACCCTCAG-TCCAG-CT-G
** **
26203960 -GGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCATGT-GGGTGCT
377 TGGCTTAGACGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAACGAG-A-GTAGGGCACT
* * * * *
26204023 CAACCGATCGGAGAGGCAGAATG-AGCAAGTAGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCG
440 CAACCGACCGGAAAGGCAGAATGCA-CAAGTAGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCG
* ** *
26204087 ATCCTACTGCCGCAACCCTCAATCC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
504 ATCCTACTACCGCAACCCTCAATCCAATTC-AATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
26204151 ACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTAGG-TGC-T-CAG-CC
568 ACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATG-AGGACGCTTACAGACC
* ** *
26204212 -G-G-CTA-GAGAGGCATAAGGCGTAAGTCGGGGGATCAGCCCGGTCCCCCTCTGCATGCTACCG
632 GGAGCCTACGAGAGGCATAAGACGTAAG-CCAGGGATCAGCCCGAT--CCC-CT---T-CTA-CG
* *
26204273 ATCCCGCTGTCGATCCTGTTGCTAC
688 -T---GCTATCGATCCTGTTGCCAC
* * * *
26204298 AACCATCGGTCTGGCTGGGGCTTAGATGTGGAATGTACTTCGTATGCCTAAGCCAACCAACGAAA
1 AACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAA
* * * * * * *
26204363 TGAGCGTACGGGCGCTCAACCGGTCAGAAAGGTAGAATGCGCAAGCCGGGGAACAGCCCAGTCCC
66 TGAGCGTGCGGGCGCTCAGCCGATCAGAAAGGTAGAATACGAAAGCC-GGGATCAGCCCGGTCCC
* * * *
26204428 TCCTTCGTGCTGTCGATCCTGCTACTGCAACCCTCGATC-CAGTCCGATCTTAGACTAGGAATGA
130 CCCTT-GTGCTGCCGATCCTGCTTC-GCAACCCTCG-TCTGA-TCCGATCTTAGACTAGGAATGA
* *
26204492 ACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTA
191 ACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTA
26204555 AGAATGCTCA
Statistics
Matches: 804, Mismatches: 144, Indels: 77
0.78 0.14 0.08
Matches are distributed among these distances:
724 60 0.07
725 17 0.02
726 120 0.15
727 54 0.07
728 7 0.01
729 2 0.00
730 59 0.07
731 98 0.12
732 2 0.00
733 75 0.09
734 4 0.00
735 4 0.00
737 73 0.09
738 223 0.28
739 4 0.00
740 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (708 bp):
AACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAA
TGAGCGTGCGGGCGCTCAGCCGATCAGAAAGGTAGAATACGAAAGCCGGGATCAGCCCGGTCCCC
CCTTGTGCTGCCGATCCTGCTTCGCAACCCTCGTCTGATCCGATCTTAGACTAGGAATGAACTCC
GTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATAGGCGC
TCAGCCGGCCAGAAAGGCCGGAGAGGCATAATGCCCAAGCCGAGGATCAACCCGATCCCCCTCTA
CATGCTGTCGATCCTACTGCCAGTCCTGCTCCACAACCCTCAGTCCAGCTGTGGCTTAGACGTGG
AATGTACTCCATATGCCTAAGCCAACCCACGAAACGAGAGTAGGGCACTCAACCGACCGGAAAGG
CAGAATGCACAAGTAGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTACTACCGCAACC
CTCAATCCAATTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGT
ATGCCTAAGCCAACCCACGAAACGAGCATGAGGACGCTTACAGACCGGAGCCTACGAGAGGCATA
AGACGTAAGCCAGGGATCAGCCCGATCCCCTTCTACGTGCTATCGATCCTGTTGCCAC
Found at i:26204479 original size:356 final size:356
Alignment explanation
Indices: 26202841--26204553 Score: 1463
Period size: 356 Copynumber: 4.7 Consensus size: 356
26202831 CGGCTACCAG
* ** * * *
26202841 AACCCTCGGTCTGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * * * * *
26202906 CGGGCATGCGGGCGCTCAGTCGATC-GAAAAGGTAGAATACGAAAGCCGAGGATCGGCCCGGTCC
66 TGAGCGTGCGGGCGCTCAGCCGATCAG-AAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCC
* * * * * *
26202970 CCTCTACGTGCTG-CTGATCCTGTTA-TCGCAACCCTCGGT-CTGACCCGATCTTAGACTAGGAA
130 CC-CTGCGTGCTGTC-GATCCTGCTACT-GCAACCCTCGATCCAG-TCCGATCTTAGACTGGGAA
** * * * *
26203032 TGCGCTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGT
191 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * ** *
26203097 GTAGGCGTTCAGTCGGCCAGAAAGGCCGGAGAGGCATAATGCCCACGCCGGGGATCAGCCCGATC
256 GTAGGCGCTCAGCCGGCC---TA---C-GAGAGGCATAAGGCGTAAGCCGGGGATCAGCCCGATC
* * * ** *
26203162 CCCCTCTGCGTGCTGTCGATCCTACTGCCGGTCCTGCT-CCAC
314 CCCCTCTACATGCTATCGATCCCGCTGCCAGTCCTGCTGCCAC
* ** * * *
26203204 AACCCTCAGTCCAGCTGTGGCTTAGATGTGGAATGTACTCCATATGCCTAAGCTAACCCACGAAA
1 AACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAA
* * * ** * * * * * *
26203269 TGAGAGTACGGGCACTCAGCCGGCCTGAAAGGCAGAATGCACAAGTCGAGGATCGGCTCGATCCC
66 TGAGCGTGCGGGCGCTCAGCCGATCAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC
* * * * *
26203334 CTCTGCGTGCTGTCGATCCTGCTACTGCAACCCTTGATCCAATTCAATCTTTGACTGGGAATGAA
131 C-CTGCGTGCTGTCGATCCTGCTACTGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAA
* * *
26203399 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATG-CG
195 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTAG
* ** * *
26203463 GACGCTTAACTGACCGGAGAGCCCTATCGGAGAGGCATAATACGTAAGCCAGGGATCAGCCTGAT
260 G-CGC-T--CAG-CC---G-G-CCTA-C-GAGAGGCATAAGGCGTAAGCCGGGGATCAGCCCGAT
* ** * *
26203528 CCCCTTCTATGTGCTATCGATCCCGTTGCCAGTCCTACTGCCAC
313 CCCCCTCTACATGCTATCGATCCCGCTGCCAGTCCTGCTGCCAC
* **
26203572 AACCCTCAGTCTGGCTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCATAAAA
1 AACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * * * * **
26203637 TGAGTGTGCAGGTGCTCAGCCGACCAGAGAGGCAGAATACGTAAGCC-GGGATTAGCCCGGTCCC
66 TGAGCGTGCGGGCGCTCAGCCGATCAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CC
** ** * * * * *
26203701 CCCTGTATGCTACCGATCTTACT-GTCGCAACCCTC-AGT-CTGATCCAATCTTAGACTGGAGAA
130 CCCTGCGTGCTGTCGATCCTGCTACT-GCAACCCTCGA-TCCAG-TCCGATCTTAGACTGG-GAA
* * * * *
26203763 CTTGAACTCCGTATGCTTAGACTAGGGATAAACTTCGTATGCCTAAGTCAACCCATGAAACGAGT
191 --TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * * * *
26203828 GTATGGGTGCTCAGCCGGTCGGAGTGGCCAATCGGGGAGGCATAATGCGCAAGCCGAGGATCAAC
254 GTGTAGGCGCTCAG-C---C-----GGCCTA-C-GAGAGGCATAAGGCGTAAGCCGGGGATCAGC
* * * **
26203893 CCGATCCCTCTTTACATGCTGTCGATCTTGCTGCCAGTCCTGCTGCCAC
308 CCGATCCCCCTCTACATGCTATCGATCCCGCTGCCAGTCCTGCTGCCAC
* * * * * *
26203942 AACCCTCGATCCGACTAGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAA
1 AACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * * * * * ** *
26204007 CGAGCATGTGGGTGCTCAACCGATCGGAGAGGCAGAATGAGCAAGTAGGGGATTGGCCCGGTCCC
66 TGAGCGTGCGGGCGCTCAGCCGATCAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGT-CC
* * * * * *
26204072 CCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAA
130 CCCTGCGTGCTGTCGATCCTGCTACTGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAA
* * *
26204137 CTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTAG
195 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTAG
* * * *
26204202 GTGCTCAGCCGG-CTA-GAGAGGCATAAGGCGTAAGTCGGGGGATCAGCCCGGTCCCCCTCTGCA
260 GCGCTCAGCCGGCCTACGAGAGGCATAAGGCGTAAG-CCGGGGATCAGCCCGATCCCCCTCTACA
* * * *
26204265 TGCTACCGATCCCGCTGTC-GATCCTGTTGCTAC
324 TGCTATCGATCCCGCTGCCAG-TCCTGCTGCCAC
* * *
26204298 AACCATCGGTCTGGCTGGGGCTTAGATGTGGAATGTACTTCGTATGCCTAAGCCAACCAACGAAA
1 AACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAA
* * * * * * *
26204363 TGAGCGTACGGGCGCTCAACCGGTCAGAAAGGTAGAATGCGCAAGCCGGGGAACAGCCCAGTCCC
66 TGAGCGTGCGGGCGCTCAGCCGATCAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC
* *
26204428 TCCTTCGTGCTGTCGATCCTGCTACTGCAACCCTCGATCCAGTCCGATCTTAGACTAGGAATGAA
131 -CCTGCGTGCTGTCGATCCTGCTACTGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAA
*
26204493 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGT
195 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
26204554 AAGAATGCTC
Statistics
Matches: 1086, Mismatches: 229, Indels: 77
0.78 0.16 0.06
Matches are distributed among these distances:
355 20 0.02
356 260 0.24
358 2 0.00
359 2 0.00
362 2 0.00
363 205 0.19
364 6 0.01
366 5 0.00
367 114 0.10
368 175 0.16
369 2 0.00
370 224 0.21
371 62 0.06
372 7 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (356 bp):
AACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAA
TGAGCGTGCGGGCGCTCAGCCGATCAGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC
CCTGCGTGCTGTCGATCCTGCTACTGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTAGG
CGCTCAGCCGGCCTACGAGAGGCATAAGGCGTAAGCCGGGGATCAGCCCGATCCCCCTCTACATG
CTATCGATCCCGCTGCCAGTCCTGCTGCCAC
Done.