Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 271 of 402
Found at i:26204505 original size:26 final size:26
Alignment explanation
Indices: 26204476--26204528 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26204466 CCAGTCCGAT
26204476 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
26204502 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26204528 C
1 C
26204529 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26204818 original size:26 final size:26
Alignment explanation
Indices: 26204789--26204840 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26204779 GGCTCAAAAT
*
26204789 CTTAGA-TTCGGAATGAGCTCCATATG
1 CTTAGACTT-GGAATGAACTCCATATG
*
26204815 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTTGGAATGAACTCCATATG
26204841 TCTAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCATATG
Found at i:26205136 original size:158 final size:156
Alignment explanation
Indices: 26204814--26205314 Score: 456
Period size: 158 Copynumber: 3.2 Consensus size: 156
26204804 AGCTCCATAT
* *
26204814 GCTTAGACTTGGAATGAACTCCGTATGTCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATG-CTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
26204879 CCGGTCG-AGAGGTACAATGCACAAGGCGGGGATCGACCCGGTCCCCC-CTGCGTGCTATCGATC
64 CC-GTCGAAGAGGCAAAATGCGCAAGACGAGGATCGACCCGGTCCCCCTCTGCGTGCTACCGATC
* * *
26204942 CGGTTGTCACAACCCTCGGTCCGATCCGA
128 CCGCTGCCACAACCCTCGGTCCGATCCGA
* * * * * * * * *
26204971 TCATAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACCAACGTGTGGGCGCTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGC-TAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
*
26205036 CCGATCGAAGAGGCATAATGCGCAAGACGAGGATCGACCCGGTCCCCCTCTGCGTGCTACCG-TC
64 CCG-TCGAAGAGGCAAAATGCGCAAGACGAGGATCGACCCGGTCCCCCTCTGCGTGCTACCGATC
* * * * *
26205100 CCGCTGCCACAATCTTCGGTCCAGGT-GGG
128 CCGCTGCCACAACCCTCGGTCC-GATCCGA
* * * * * *
26205129 GCTTAGACATGGAATGAGCTCCCTATGCCTATGCCAACCCATGAAACGGGTGTGCGGGCGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATG-CTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
26205194 CCGGCTGAAGAGGCAAAATACGCAAGTCGAGGATTGGCCCGGT--CCCTCTGCGTGCTATCGATC
64 CCGTC-GAAGAGGCAAAATGCGCAAGACGAGGATCGACCCGGTCCCCCTCTGCGTGCTACCGATC
* * * *
26205257 CTGCTGTCGCAACCCTCGGTCCTATCCGA
128 CCGCTGCCACAACCCTCGGTCCGATCCGA
* * *
26205286 TCCTAGACTGGGAATGAACTCCATATGCT
1 GCTTAGACT-GGAATGAACTCCGTATGCT
26205315 TAGACTGGGG
Statistics
Matches: 272, Mismatches: 60, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
156 23 0.08
157 97 0.36
158 136 0.50
159 16 0.06
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACTGGAATGAACTCCGTATGCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
GTCGAAGAGGCAAAATGCGCAAGACGAGGATCGACCCGGTCCCCCTCTGCGTGCTACCGATCCCG
CTGCCACAACCCTCGGTCCGATCCGA
Found at i:26205328 original size:26 final size:26
Alignment explanation
Indices: 26205289--26205339 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26205279 TATCCGATCC
26205289 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
* *
26205315 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
26205340 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:26205608 original size:353 final size:354
Alignment explanation
Indices: 26205125--26206099 Score: 1069
Period size: 353 Copynumber: 2.7 Consensus size: 354
26205115 TCGGTCCAGG
** * * * * *
26205125 TGGGGCTTAGACATGGAATGAGCTCCCTATGCCTATGCCAACCCATGAAACGGGTGTGCGGGCGC
1 TGGGGCTTAGATGTGGAATGA-CTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGC
* * * * * * * *
26205190 TCAACCGGCTGAAGAGGCAAAATACGCAAGTCGAGGATTGGCCCGGT-CCCTCTGCGTGCTATCG
65 TCAGCCGGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCGGTCCCCCCTACGTGCTATCG
* * *
26205254 ATCCTGCTGTCGCAACCCTCGGTCCTATCCGATCCTAGACTGGGAATGAACTCCATATGCTTAGA
130 ATCCTGCTGTCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* * *
26205319 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGAGCTCAGCTGGTC-
195 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCATGCGGGAGCTCAGCCGGTCG
* * * ** * * *
26205383 CATAGGCATAATGCGTAAGCCGGGGATCAGCACGATCCCCCTCTGCGTGCTATCGATCCCACTGC
260 AAGAGGCATAATACACAAGCCGGGGATCAGCACGATCCCCCTCTACATGCTAGCGATCCCACTGC
26205448 CAGTCATGCCGCCACAACCCTCA-GTCCAAC
325 CAGTCATGCCGCCACAACCCT-AGGTCCAAC
* *
26205478 TGGGGCTTAGATGTGGAATGCACTCCGTATGCCTAAGCCAACCCGTGAAACGAGCGTTC-GGCGC
1 TGGGGCTTAGATGTGGAATG-ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGC
* * * * *
26205542 TCAGCTGGCCAAAGAGGCAGAATGCGTAAGTCGAGGATCAGCTCGGTCCCCCCTACATGCTATCG
65 TCAGCCGGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCGGTCCCCCCTACGTGCTATCG
** * * * * *
26205607 ATCCTGCTACCGTAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACACCGTATACTTAGA
130 ATCCTGCTGTCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* * *
26205672 CTGGGGATGAACTCCGTATGACTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTTAACCGACTG
195 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCATGC-GG-G----A--G-CT-
* * * * * *
26205737 AGAGGCCGGTCGAAGAGGCATAATATACAAGTCGGGGATCAGCCCGGTCCCCCTCTACATGCTGG
250 -CA-GCCGGTCGAAGAGGCATAATACACAAGCCGGGGATCAGCACGATCCCCCTCTACATGCTAG
* * * *
26205802 CGATCCCGCTGCCAGTCTTGCTGCCACAACCCTAGGTCCGAC
313 CGATCCCACTGCCAGTCATGCCGCCACAACCCTAGGTCCAAC
* * *
26205844 TGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGGCAACCCATGAAACGAGCATGCAGGTGC
1 TGGGGCTTAGATGTGGAATG-ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGC
* * * * * * *
26205909 TCAGCCGGTCGGAGAGGCAGAATGCGCAAGTC-AGAGATCGGCTTGATCCCCCCAATGTGCTGTC
65 TCAGCCGGCCGAAGAGGCAGAATGCGCAAGTCGAG-GATCGGCTCGGTCCCCCCTACGTGCTATC
** *
26205973 GATCCTGCTGTCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
129 GATCCTGCTGTCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
* * * * * * * *
26206038 GCTAGTGATGAACTCCATATACCTAAGTCAACCCACGAAAAGTGCATACGGGCGCTCAGCCG
194 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCATGCGGGAGCTCAGCCG
26206100 ACTTGAGAGG
Statistics
Matches: 510, Mismatches: 94, Indels: 34
0.80 0.15 0.05
Matches are distributed among these distances:
352 42 0.08
353 162 0.32
354 3 0.01
355 5 0.01
356 1 0.00
358 2 0.00
359 2 0.00
361 1 0.00
362 2 0.00
364 1 0.00
365 8 0.02
366 134 0.26
367 147 0.29
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (354 bp):
TGGGGCTTAGATGTGGAATGACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCT
CAGCCGGCCGAAGAGGCAGAATGCGCAAGTCGAGGATCGGCTCGGTCCCCCCTACGTGCTATCGA
TCCTGCTGTCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCATGCGGGAGCTCAGCCGGTCGA
AGAGGCATAATACACAAGCCGGGGATCAGCACGATCCCCCTCTACATGCTAGCGATCCCACTGCC
AGTCATGCCGCCACAACCCTAGGTCCAAC
Found at i:26205676 original size:26 final size:26
Alignment explanation
Indices: 26205640--26205690 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26205630 CCAATCTGAT
26205640 CTTAGACTGGGAATGAACACCGTATA
1 CTTAGACTGGGAATGAACACCGTATA
* *
26205666 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACACCGTAT
26205691 GACTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATA
Found at i:26207412 original size:26 final size:26
Alignment explanation
Indices: 26207383--26207435 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26207373 CCGGTCTGAT
*
26207383 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
26207409 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
26207435 C
1 C
26207436 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:26207774 original size:26 final size:26
Alignment explanation
Indices: 26207738--26207790 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26207728 CTGGTTCGAT
*
26207738 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26207764 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26207790 C
1 C
26207791 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26208056 original size:368 final size:351
Alignment explanation
Indices: 26207239--26208230 Score: 1020
Period size: 368 Copynumber: 2.8 Consensus size: 351
26207229 GCCATAGAAT
* * * *
26207239 GTACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGCCGCTCAAC-CGTTCGAAGAGGC
1 GTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-AACTCGATCGAAGAGGC
* * * *
26207303 AAAATGAGCAAGTTGAGGATCGGCCCGGTTCCCCCTGTGTGCTGCCGATCCTGCTGCGCCAACCC
65 AGAATGCGCAAGTAG-GGATCGGCCC-GATCCCCCTGTGTGCTGCCGATCCTGCTGC-CCAACCC
* *
26207368 TCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATA
127 TCGAT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTA
* *
26207433 TGCCTAAGTCAACCCACGAAACGAGCATTCGGGCGCTCAGTCGGCCGGAGAGGCATAATGCGTAA
191 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCATAATGCGTAA
* * * * ** * * *
26207498 GCCGAGGATTAGCCCGGTCCCCCTCTGCGTGCTATCGATCTCGTTACTGGTCCTGCTACCATAAC
256 GCCGAGGATCAGCCCAGTCCCCCTCTGCGTGCTACCGATCCCACTACCGGTCCTACTACCACAAC
* ** *
26207563 CCTTAGTCCAGCTAGGGCTTAGATGTGGAAT
321 CCTCAGTCCAGCTAGGGCTTAGACATGGAAA
* * * * * *
26207594 GTACTTCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGTGCGCTCAGTCGATCGGAGAGGCA
1 GTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAACTCGATCGAAGAGGCA
* * * * * * * * *
26207659 GAATACACAAGTTGGGGATTGGCCCGATCCCCCTTGCGTGTTACCGATCCTACTACCACAACCCT
66 GAATGCGCAAG-TAGGGATCGGCCCGATCCCCC-TGTGTGCTGCCGATCCTGCTGCC-CAACCCT
*
26207724 CGATCTGGT-TCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTA
128 CGATC-GGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTA
** *
26207788 TGCCTAAGTCAACCCATAAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGTCGATCGGAGAG
191 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA----GTC-----GG-C---CGGAGAG
*
26207853 GCATAATGC-TCAAGCC-AGGGATCAGCCCAGTCCTCCTCTGCGTGCTACCGATCCCACTACCGG
243 GCATAATGCGT-AAGCCGA-GGATCAGCCCAGTCCCCCTCTGCGTGCTACCGATCCCACTACCGG
* *
26207916 TCCTACTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAAA
306 TCCTACTACCACAACCCTCAGTCCAGCTAGGGCTTAGACATGGAAA
* * * * *
26207962 GTACTCCGTATGCCTCAGCCAACCCACAAAACGAGCGTTCGGGCGCTTACTCGATCGAAAAGGCA
1 GTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAACTCGATCGAAGAGGCA
* * * **
26208027 GAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGTATGCTGTCGATCCTGCTGTCGTAACCCT
66 GAATGCGCAAG-TAGGGATCGGCCCGAT-CCCCCTGTGTGCTGCCGATCCTGCTG-CCCAACCCT
* * * * * **
26208092 TGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAATGGGGATGAATTTTGTAT
128 CGAT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTAT
* * * * ** ** * *
26208157 GCCAAAGTCAAACCACGAAATGAGCGTGCGGGCGCTTAGTCAACCAAAGAGGCAGAATGCGCAAG
192 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCATAATGCGTAAG
*
26208222 CCGGGGATC
257 CCGAGGATC
26208231 GAACGGGAGG
Statistics
Matches: 517, Mismatches: 93, Indels: 54
0.78 0.14 0.08
Matches are distributed among these distances:
354 11 0.02
355 207 0.40
356 2 0.00
358 1 0.00
359 3 0.01
364 5 0.01
365 1 0.00
367 2 0.00
368 277 0.54
369 8 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (351 bp):
GTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAACTCGATCGAAGAGGCA
GAATGCGCAAGTAGGGATCGGCCCGATCCCCCTGTGTGCTGCCGATCCTGCTGCCCAACCCTCGA
TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCATAATGCGTAAGCCGA
GGATCAGCCCAGTCCCCCTCTGCGTGCTACCGATCCCACTACCGGTCCTACTACCACAACCCTCA
GTCCAGCTAGGGCTTAGACATGGAAA
Found at i:26208135 original size:26 final size:26
Alignment explanation
Indices: 26208106--26208158 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26208096 CCGATCTGAT
*
26208106 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
* * *
26208132 CTTAGAATGGGGATGAATTTTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
26208158 C
1 C
26208159 CAAAGTCAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCTGTATG
Found at i:26209041 original size:26 final size:26
Alignment explanation
Indices: 26209012--26209064 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26209002 CCAATCCGAT
26209012 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
26209038 CTTATACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26209064 C
1 C
26209065 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26209402 original size:26 final size:26
Alignment explanation
Indices: 26209366--26209418 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26209356 CTGGTTCATT
*
26209366 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26209392 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26209418 C
1 C
26209419 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26209772 original size:26 final size:26
Alignment explanation
Indices: 26209732--26209782 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
26209722 CAATCTGATC
26209732 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
26209758 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
26209783 CCAAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:26209834 original size:366 final size:360
Alignment explanation
Indices: 26208852--26209822 Score: 1070
Period size: 366 Copynumber: 2.7 Consensus size: 360
26208842 GGCACCGTAT
* * * * * *
26208852 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * * * *
26208917 CCGGTCGGAGAGGTAGAATACGCAAGCCGGGGATCGACACGATCCCCCCCTGTGTGCGGTCAATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT-CCCCCCTGCGTGCTGTCGATC
* * * * *
26208982 ATGCTGCCGCAACCCTC-AGTCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCTTATACT
130 CTGCTGTCGCAACCCTCGA-TCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
*
26209046 GGGGATGAACTCCGTATGCCTAAGTCAACCCAT-AAAATGAGCATGCGGGTGCTCAACC-----G
194 GGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAA-GAGCATGCGGGCGCTCAACCGGAGAG
* * * ** * *
26209105 GCCGGAGAGGCATAATGCACAAGCTGGGGATCAACCCGTTCCTCCTCTGCATGCTGTCGATCCCT
258 GCCGGAGAGGCATAAGGCACAAGCTAGGGATCAACCCGGTCCTCCTCTGCATGCTACCAATCCCG
* **
26209170 CTGTCGGTCCAGCTACCACAACCCTCGATCCAGCTGGG
323 CTGCCAATCCAGCTACCACAACCCTCGATCCAGCTGGG
* * * *
26209208 GCTAAGACGTGGAATCTACTCCATATGCCTAAGCCAACCCGCGAAACGAGCGTGA-GGGCACTCA
1 GCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT-ACGGGCACTCA
* * *
26209272 GCCGATC-GAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTACCCCCTGCGTGCTGTTGATC
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
* * * * *** * *
26209336 CTGCTATCGTAATCCTTGATCTGGT-TCATTCTTAGATTGGGAATGAACTCCGTATGCTTAGACT
130 CTGCTGTCGCAACCCTCGATCCAATCTGA-TCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * **
26209400 GGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAAAGAGCATACGAGCGCTCGTCGGCCGGAG
194 GGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCATGCG-G-GCGC-TCAACCGGAG
** *
26209465 AGGCCGACCAGAGAGGCATAAGGCTTAAG-TCAGGGATCAACCTGGTCC-CCTTCTGCATGCTAC
256 AGGCCG----GAGAGGCATAAGGCACAAGCT-AGGGATCAACCCGGTCCTCC-TCTGCATGCTAC
* ** * *
26209528 CAATCTCGCTGCCAATCTTGCTGCCACAACCCTCGATCCGGCTGGG
315 CAATCCCGCTGCCAATCCAGCTACCACAACCCTCGATCCAGCTGGG
* * *
26209574 GCTTAGACGTGGAATGTACTCCGTATGTCTAAGCCAACCCACGAAACGAGTGTACGGGCACTTAG
1 GCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* *
26209639 CCGGTCGGAGA-GCAGAATGCGCAAGCCGAGGCTCGACCCGGT-CCCCCTGCGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
** * *
26209702 TATTGTCACAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGGTTAGACTGG
131 TGCTGTCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * *
26209767 GGATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAACC
196 GGATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCATGCGGGCGCTCAACC
26209823 AATCGGAGAG
Statistics
Matches: 502, Mismatches: 92, Indels: 36
0.80 0.15 0.06
Matches are distributed among these distances:
353 1 0.00
354 102 0.20
355 38 0.08
356 61 0.12
357 4 0.01
362 9 0.02
363 2 0.00
364 1 0.00
365 112 0.22
366 168 0.33
367 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (360 bp):
GCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGTCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GGATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCATGCGGGCGCTCAACCGGAGAGGCC
GGAGAGGCATAAGGCACAAGCTAGGGATCAACCCGGTCCTCCTCTGCATGCTACCAATCCCGCTG
CCAATCCAGCTACCACAACCCTCGATCCAGCTGGG
Found at i:26210039 original size:184 final size:182
Alignment explanation
Indices: 26209574--26210041 Score: 562
Period size: 184 Copynumber: 2.6 Consensus size: 182
26209564 TCCGGCTGGG
* * * * * * *
26209574 GCTTAGACGTGGAATGTACTCCGTATGTCTAAGCCAACCCACGAAACGAGTGTACGGGCACTTAG
1 GCTTAGAC-TGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCTCTCAG
* * *
26209639 CCGGTCGGAGA-GCAGAATGCGCAAGCCGAGGCTCGACCCGGTCCCCCTGCGTGCTGTCGATCCT
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTGCGTGCTGTCGATCCT
* * * * *
26209703 ATTGTCACAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTAT
130 ACTATCACAACCCTCAATCCAATCTGATCTTAGACTAGGAATGAACTCCGTAC
* * *
26209756 GGTTAGACTGGGGATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTGCGGGCGT-TCA
1 GCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGC-TCTCA
* * * ** * *
26209820 ACCAATCGGAGAGGCAGAATGCACAAGTTGGGGATCGGCCCGGTCCCCCCTGTGTGCTGTCGATC
64 GCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT-CCCCCTGCGTGCTGTCGATC
* * **
26209885 CTGCTATCGCAACCCTCAATCCGCTCTGATCTTAGACTAGGAATGAACTCCGTAC
128 CTACTATCACAACCCTCAATCCAATCTGATCTTAGACTAGGAATGAACTCCGTAC
* *
26209940 GCTTAGACTGAGGATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGCGCACGGGCTCTCAG
1 GCTTAGACTG-GGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCTCTCAG
* * * *
26210005 CCGACCAGAGAGGTAGGATGCGCAAGCCGGGGATCGA
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
26210042 ACGGGTGGTA
Statistics
Matches: 236, Mismatches: 44, Indels: 10
0.81 0.15 0.03
Matches are distributed among these distances:
181 1 0.00
182 60 0.25
183 27 0.11
184 148 0.63
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (182 bp):
GCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCTCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTGCGTGCTGTCGATCCTA
CTATCACAACCCTCAATCCAATCTGATCTTAGACTAGGAATGAACTCCGTAC
Found at i:26210701 original size:159 final size:158
Alignment explanation
Indices: 26210346--26210710 Score: 410
Period size: 158 Copynumber: 2.3 Consensus size: 158
26210336 AGCTCTGTAT
* *
26210346 GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAGTGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * * * *
26210411 CCGGCTAGAGAGGCAGAATGTACAAGTCGAGGATCGAACTGGTCCCCCCTGTGTGCTATCGGTCC
66 CCGGCGAGAGAGGCAGAATGCACAAGCCGAAGATCGAACCGGTCCCCCCTGTGAGCTATCGGTCC
** * **
26210476 TGCTGCCGCAACCCTCGATCCGGTTCGA
131 CACTGCCACAACCCTCGATCCGACTCGA
* * * * *
26210504 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * ** * * *
26210568 GCCGGCCGA-AGAGGCATAATGCGCAAGCCGAAGATCGGCCCGGTCCCCATCTGTGAGCTGTTGG
65 ACCGG-CGAGAGAGGCAGAATGCACAAGCCGAAGATCGAACCGGTCCCC-CCTGTGAGCTATCGG
* *
26210632 TCCCACTGCCACAACCCTCGGTCCGACTGGA
128 TCCCACTGCCACAACCCTCGATCCGACTCGA
* * *
26210663 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
26210711 GGCATGCTGG
Statistics
Matches: 169, Mismatches: 34, Indels: 7
0.80 0.16 0.03
Matches are distributed among these distances:
157 1 0.01
158 90 0.53
159 77 0.46
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
CCGGCGAGAGAGGCAGAATGCACAAGCCGAAGATCGAACCGGTCCCCCCTGTGAGCTATCGGTCC
CACTGCCACAACCCTCGATCCGACTCGA
Found at i:26210748 original size:159 final size:159
Alignment explanation
Indices: 26210346--26210768 Score: 363
Period size: 159 Copynumber: 2.7 Consensus size: 159
26210336 AGCTCTGTAT
* * * ** *
26210346 GCTTAGACAT-GGAATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAGTGTGCGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * ** * ** * * * * *
26210410 ACC-GGCTAGAGAGGCAGAATGTACAAGTC-GAGGATCGAACTGGTCCCC-CCTGTGTGCTATCG
65 GCCAGCCGA-AGAGGCAGAATGCGCAAGCCAGA-GATCGGCCCGGTCCCCATCTGTGAGCTGTTG
** * **
26210472 GTCCTGCTGCCGCAACCCTCGATCCGGTTCGA
128 GTCCCACTGCCACAACCCTCGATCCGACTCGA
* * * * *
26210504 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* *
26210569 CCGGCCGAAGAGGCATAATGCGCAAGCC-GAAGATCGGCCCGGTCCCCATCTGTGAGCTGTTGGT
66 CCAGCCGAAGAGGCAGAATGCGCAAGCCAG-AGATCGGCCCGGTCCCCATCTGTGAGCTGTTGGT
* *
26210633 CCCACTGCCACAACCCTCGGTCCGACTGGA
130 CCCACTGCCACAACCCTCGATCCGACTCGA
* * * * * *
26210663 GCTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCTGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * *
26210727 GCTAGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCG
65 GCCAGCCGAAGAGGCAGAATGCGCAAGCCAGAGATCGGCCCG
26210769 ATACCCTCGG
Statistics
Matches: 213, Mismatches: 46, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 87 0.41
159 123 0.58
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCAGCCGAAGAGGCAGAATGCGCAAGCCAGAGATCGGCCCGGTCCCCATCTGTGAGCTGTTGGTC
CCACTGCCACAACCCTCGATCCGACTCGA
Found at i:26211218 original size:26 final size:26
Alignment explanation
Indices: 26211189--26211241 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26211179 CCGATCCGAT
26211189 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
26211215 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26211241 C
1 C
26211242 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26211339 original size:184 final size:183
Alignment explanation
Indices: 26211047--26211491 Score: 586
Period size: 184 Copynumber: 2.4 Consensus size: 183
26211037 TGTCGAATGT
* * * * * * * *
26211047 ACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGTGGTCGCTCAGCCGATCGGAGAGGCAGA
1 ACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG-CACTCAGCCGACCAGAGAGGCAGA
* * * * *
26211112 ATGTGCAAGTCGGGGATCGGTCCGATCCCCCTTGTATGCTGTCGATCCTACTACCGTAACCCTTC
65 ATGCGTAAGTCGAGGATCGGCCCGATCCCCCTTGTATGCTGTCGATCCTACTACCGCAACCC-TC
26211177 -ATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGA
129 GATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGA
* *
26211231 ACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCACTCAACCGGCCAGAGAGGCAGA
1 ACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG-GCACTCAGCCGACCAGAGAGGCAGA
* * *
26211296 ATGCATAAGTCGAGGATCGGCCCGATCCCCCTTGTGTGCTGTCGATCCTGCTACCGCAACCCTCG
65 ATGCGTAAGTCGAGGATCGGCCCGATCCCCCTTGTATGCTGTCGATCCTACTACCGCAACCCTCG
* * * * * *
26211361 ATCTGGTTCGATCTTATACTAGGAATGAACTCTGTATGTTTAGACTGGGGATGA
130 ATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGA
* * * * *
26211415 ACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAGTCGACCAGGGAGGCAGG
1 ACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-GGCACTCAGCCGACCAGAGAGGCAGA
26211480 ATGCGTAAGTCG
65 ATGCGTAAGTCG
26211492 GGAATCGAAC
Statistics
Matches: 226, Mismatches: 32, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
183 2 0.01
184 222 0.98
185 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (183 bp):
ACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGCACTCAGCCGACCAGAGAGGCAGAA
TGCGTAAGTCGAGGATCGGCCCGATCCCCCTTGTATGCTGTCGATCCTACTACCGCAACCCTCGA
TCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGA
Found at i:26212431 original size:158 final size:157
Alignment explanation
Indices: 26212131--26212629 Score: 497
Period size: 158 Copynumber: 3.2 Consensus size: 157
26212121 GCTCCATATG
* * *
26212131 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGGGTACAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
26212196 CGATCGGAGAGGCAGAATACGCAAGCCGGGCATCGACCCAGTCCCCCCCTGTGTGCTATCGATCC
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGT-CCCCCCTGCGTACTGTCGATCC
** *
26212261 TGCTACTGCAACCTTGGGCCGGTCTGAT
130 TGCTACCACAACCTTGGTCCGGTCTGAT
* * * *
26212289 CTTAGAC-TGGGAATGAACTCCGTATGCATAAG-TCAACCTATGAAACGAGCGTGCGGGCGTTAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
26212352 GCCGACCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCTTCTGCGTACTGTCGGT
64 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCC-CCTGCGTACTGTCGAT
* * ** *
26212417 CCCGCTGCCACAACCCTCAGTCC-GACTGGGGAT
128 CCTGCTACCACAA-CCTTGGTCCGGTCT---GAT
* * * *
26212450 C--AGACATGGAATGAGCTCCCTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGACGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
26212513 TGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCCTACGTACTGCCGATCCT
66 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTACTGTCGATCCT
* * *
26212578 ACTACCACAACCTTCGATTCGGTCTGAT
131 GCTACCACAACCTT-GGTCCGGTCTGAT
* *
26212606 CTTATAC-TGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCCGTAT
26212630 ACTTAGACTA
Statistics
Matches: 270, Mismatches: 58, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
156 4 0.01
157 23 0.09
158 139 0.51
159 98 0.36
160 2 0.01
161 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTACTGTCGATCCT
GCTACCACAACCTTGGTCCGGTCTGAT
Found at i:26212634 original size:25 final size:26
Alignment explanation
Indices: 26212606--26212655 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
26212596 TCGGTCTGAT
* *
26212606 CTTATACT-GGAATGAACTCTGTATA
1 CTTAGACTAGGAATGAACTCCGTATA
*
26212631 CTTAGACTAGGGATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
26212656 GCCTAAGTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATA
Found at i:26213243 original size:329 final size:331
Alignment explanation
Indices: 26212716--26213325 Score: 794
Period size: 329 Copynumber: 1.8 Consensus size: 331
26212706 GGCCGATCAA
* * * *
26212716 AGAGGCATAATGTGCAAGTCAGGGATCAGCCTGGTCCCCCTCTGCGTGCTGTCAATCCCGCTACT
1 AGAGGCATAATGTGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCAATCCCGATACC
** * *
26212781 GGTCCTACTGCCACAACCCTCGGTCCAACTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAA
66 AATCCTACTACCACAACCCTCGGTCCAACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAA
*
26212846 GCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGATCGAAAAGGCAGAATACGCAAACCAGGG
131 GCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGATCGAAAAGGCAGAATACGCAAACCAGGG
* * * * * *
26212911 ATCGAC-CAGGTCCCCCCTGCGTGCTGCCAATCCTGCTGCTGCAACCCT-T-GATCTGGTTCGAT
196 ATCGACTC-GGTCCCCCCTGCATGCTGCCAATCCTGCTACCGCAACCCTATCGATCCGATCCGAT
26212973 CTTAGACTGGGAATGAACTTCGGATGCCTAAGTAAACCCACGAAATGAACGTACAAGCGCTCAAC
260 CTTAGACTGGGAATGAACTTCGGATGCCTAAGTAAACCCACGAAATGAACGTACAAGCGCTCAAC
26213038 CGACCGG
325 CGACCGG
* * * * * *
26213045 AGAGGCATAATGTGCAAGCCGGGGATCAGCCCGGTCCTCCTCTGCGTGTTGTCGATCTCGATGCC
1 AGAGGCATAATGTGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCAATCCCGATACC
* * * ** *
26213110 AATCTTGCTACCACAACCCTTGGTCCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGGCTAA
66 AATCCTACTACCACAACCCTCGGTCCAACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAA
* * ** * * * * * **
26213175 GCTAACCCACGAAACGAGGGTACGGGTGCTCATCCGATCGGAGAGGCAGAATGCGCAAGCTGGGG
131 GCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGATCGAAAAGGCAGAATACGCAAACCAGGG
* * *
26213240 ATCGGCTCGGTCCCCCCTGCATGCTGTCGATCCTGCTACCGCAACCCTCGATCCGATCCGATCCG
196 ATCGACTCGGTCCCCCCTGCATGCTGCCAATCCTGCTACCGCAACCCT--AT-CGATCCGATCCG
26213305 ATCTTAGACTGGGAATGAACT
258 ATCTTAGACTGGGAATGAACT
26213326 CTGTATGCTT
Statistics
Matches: 234, Mismatches: 41, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
329 203 0.87
330 1 0.00
332 1 0.00
334 29 0.12
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (331 bp):
AGAGGCATAATGTGCAAGCCAGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCAATCCCGATACC
AATCCTACTACCACAACCCTCGGTCCAACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAA
GCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGATCGAAAAGGCAGAATACGCAAACCAGGG
ATCGACTCGGTCCCCCCTGCATGCTGCCAATCCTGCTACCGCAACCCTATCGATCCGATCCGATC
TTAGACTGGGAATGAACTTCGGATGCCTAAGTAAACCCACGAAATGAACGTACAAGCGCTCAACC
GACCGG
Found at i:26213343 original size:26 final size:26
Alignment explanation
Indices: 26213307--26213359 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26213297 CCGATCCGAT
*
26213307 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26213333 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26213359 C
1 C
26213360 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26214720 original size:342 final size:335
Alignment explanation
Indices: 26214106--26214841 Score: 814
Period size: 342 Copynumber: 2.2 Consensus size: 335
26214096 CCGGTTTGAT
* * * * *
26214106 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCAGGCACTAAAC
1 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGACACTAAAC
* * *
26214171 TAGCTGGAGAGGCATAATGGGCAAGCCGGGGATCGACCCGGTCCCCTTCTATGTGCTACCGATCC
66 CAGCTGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCTTCTATGTGCTACCGATCC
* *
26214236 TGCTGCCACAACTCTCGATCCGGTTGGGGCTTAGATATGGAATGAGCTCCCTATGCCTAAGCCAA
131 TGCTGCCACAACTCTAGATCCGGTTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAA
* ** *
26214301 CCCACGAAACGGGGGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCACAAGCAAGGGATCGA
196 CCCACGAAACGAGCATACGGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAGCAAGGGATCGA
* * * *
26214366 CCCGGT-CCCCC-CTG-CG-TGCTGTCGTAACCCTCGGTCC-AGTCTGATCTTAGACTGGGGATG
261 CCCGGTCCCCCCGCTGTCGCTGCTGTCGCAACCCTCGATCCGA-TCTGATCTTACACTGGGAATG
*
26214426 AACTCCATCTA
325 AACTCCATATA
* *
26214437 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GAACACTCAG
1 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAG-ACACTAAA
* *
26214501 CCAGCTGGAGAGGCATAATGCGTAAGCCAGGGATC-AGCCTGGT-CCCTCTCTACGTGCTGTCAA
65 CCAGCTGGAGAGGCATAATGCGCAAGCCAGGGATCGA-CCCGGTCCCCT-TCTA--TG-TG-C--
* * *
26214564 TCCCACTGTCAGTCCTGTTGCCACAAC-CGTAG-TCTGGTTGGGGCTTAGACATGGAATGTA-CT
122 T---ACCG--A-TCCTGCTGCCACAACTC-TAGATCCGGTTGGGGCTTAGACATGGAATG-AGCT
* * * *
26214626 TCGTATGCCTAAGCCAACCCATGAAATGAGCATACGGGCACTCAGCCGACCGGAGAGGCAGAATG
179 CCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAGCCGACCGGAGAGGCAGAATG
* *
26214691 CGCAAGCCAGGGATCGACCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGTCGCAACCCTCGATC
244 CACAAGCAAGGGATCGACCCGGTCCCCCC-----GCTGTCG---CTGCTGTCGCAACCCTCGATC
* *
26214756 CGATCTGATTTTACACTGGGAATGAACTCCATATG
301 CGATCTGATCTTACACTGGGAATGAACTCCATATA
* *
26214791 CTTAGACT-GGGATGAACT-TCGTATGCCTAAGTTAACCCACGAAATGAGCGT
1 CTTAGACTGGGGATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGT
26214842 TCGGGCGCTC
Statistics
Matches: 338, Mismatches: 36, Indels: 40
0.82 0.09 0.10
Matches are distributed among these distances:
330 6 0.02
331 95 0.28
333 2 0.01
334 2 0.01
335 1 0.00
337 1 0.00
340 3 0.01
342 106 0.31
343 22 0.07
349 3 0.01
350 2 0.01
352 1 0.00
353 39 0.12
354 54 0.16
355 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (335 bp):
CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGACACTAAAC
CAGCTGGAGAGGCATAATGCGCAAGCCAGGGATCGACCCGGTCCCCTTCTATGTGCTACCGATCC
TGCTGCCACAACTCTAGATCCGGTTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAA
CCCACGAAACGAGCATACGGGCACTCAGCCGACCGGAGAGGCAGAATGCACAAGCAAGGGATCGA
CCCGGTCCCCCCGCTGTCGCTGCTGTCGCAACCCTCGATCCGATCTGATCTTACACTGGGAATGA
ACTCCATATA
Found at i:26216476 original size:367 final size:366
Alignment explanation
Indices: 26215778--26216644 Score: 1050
Period size: 367 Copynumber: 2.4 Consensus size: 366
26215768 GTCCCGCTAG
* * *
26215778 CACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGGCAACCCAT
1 CACAACCCTCGGTCCGACTAGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAACCCAT
* ** * * * *
26215842 -AAA-ATGGCGTGTAGGCGCTCAACCGGCCGAAGAGGCAGAATGTACAAGCCGGGGATCGGCCCG
65 GAAACA-AGCGTGCGGGCGCTCAACCGACCGAAGAGGCAGAATGCATAAGCCGGGGATCGGCCAG
* ** * * *
26215905 ATCACCCTGCGTGCTATCGATCCTGTTGCCATAACCCTCGGTCGGTATGATCTTGGACTGGGAAT
129 ATCACCCTGCATGCTATCGATCCTACTGCCATAACCATCGATCGGTATGATCTTAGACTGGGAAT
* * * *
26215970 GAACTCCGTGTGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTG
194 GAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCATA
* * * * * * *
26216035 CGGGCGCTCAGTCGATCGTAGAGGTCGGTCGGAGAAGTATAATGCGTAAGCCGGGAATCAGCCCG
259 CGGGCGCTCAGCCGACCGGAGAGGCCGGTCGGAGAAGCATAATGCGCAAGCCGGGAATCAACCCG
* * * * *
26216100 GTTCCCCTCTGCGTGCTGCCGATCCCGCTGTCGATCCTGCTGC
324 ATCCCCCTCTGCATGCTGCCGATCCCGCTGTCGATCCTACTAC
* * *
26216143 CACAACCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCGATG
1 CACAACCCTCGGTCCGACTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATG
* * *
26216208 AAACAAGCGTGCGGGCGCTCAACCGACCGAAGAGGCAGAACGCGTAAGCCGAGGATCGGTCCAG-
66 AAACAAGCGTGCGGGCGCTCAACCGACCGAAGAGGCAGAATGCATAAGCCGGGGATCGG-CCAGA
* * *
26216272 TCCCCCCTGCATGCTGTCGATCCTACTGCCGTAACCATCGATCTGGT-TAGATCTTAGACTGGGA
130 T-CACCCTGCATGCTATCGATCCTACTGCCATAACCATCGATC-GGTAT-GATCTTAGACTGGGA
*
26216336 ATGAACTCCGTATGCTTAGA-TAGGGGATGAACTCCATATGCCTAGGTC-ACCCACGAAATGAGC
192 ATGAACTCCGTATGCTTAGACT-GGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGC
** * *
26216399 ATACGGGCGCTCAGCC-AGCCGGAGAGGCCGGTCGGAGGGGCATAATGCGCAAGTCGGGGATCAA
256 ATACGGGCGCTCAGCCGA-CCGGAGAGGCCGGTCGGAGAAGCATAATGCGCAAGCCGGGAATCAA
* * * *
26216463 CTCGATCCCCCTCTGCATGTTGTCGATCCCGCTGTCGGTCCTACTAC
320 CCCGATCCCCCTCTGCATGCTGCCGATCCCGCTGTCGATCCTACTAC
* * *
26216510 CACAACCCTCGATTCGACTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACG
1 CACAACCCTCGGTCCGACTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATG
* * ** * * * *
26216575 AAACGAGCGTTCGGGCGCTCAGTCGACCGGAGAGGCATAATGCATAAGCCGGGGATCAGCCTGAT
66 AAACAAGCGTGCGGGCGCTCAACCGACCGAAGAGGCAGAATGCATAAGCCGGGGATCGGCCAGAT
26216640 C-CCCT
131 CACCCT
26216645 TCTGCGTGCT
Statistics
Matches: 425, Mismatches: 67, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
365 60 0.14
366 55 0.13
367 250 0.59
368 60 0.14
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (366 bp):
CACAACCCTCGGTCCGACTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATG
AAACAAGCGTGCGGGCGCTCAACCGACCGAAGAGGCAGAATGCATAAGCCGGGGATCGGCCAGAT
CACCCTGCATGCTATCGATCCTACTGCCATAACCATCGATCGGTATGATCTTAGACTGGGAATGA
ACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCATACG
GGCGCTCAGCCGACCGGAGAGGCCGGTCGGAGAAGCATAATGCGCAAGCCGGGAATCAACCCGAT
CCCCCTCTGCATGCTGCCGATCCCGCTGTCGATCCTACTAC
Found at i:26217214 original size:26 final size:26
Alignment explanation
Indices: 26217178--26217230 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26217168 TTGATTCGAT
*
26217178 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26217204 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
26217230 C
1 C
26217231 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26218229 original size:26 final size:26
Alignment explanation
Indices: 26218188--26218240 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26218178 CTGGTTCGAT
26218188 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26218214 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
26218240 C
1 C
26218241 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26219679 original size:159 final size:158
Alignment explanation
Indices: 26219316--26219806 Score: 458
Period size: 159 Copynumber: 3.1 Consensus size: 158
26219306 AGCTCCGTAT
* * *
26219316 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAG-TCAA
*
26219381 CCAG-CTGGAGAGGCAAAATGCGCAAGCTGGGGATC-GACTCCA-TCCCCCT-TGTGTGCTGTCG
65 CCAGTC-GGAGAGGCAAAATGCGCAAGCCGGGGATCAG-C-CCAGTCCCCCTCTGTGTGCTGTCG
* * * *
26219442 ATCTTC-CTATCGTAACCCTCGGTCTGATTCAA
127 ATC-CCGCTGTCGCAACCCTCGGTCTGACTCAA
* ** * * * * * * * *
26219474 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAATCCATGAAACGAGCGTGCAGGTGTTGAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAG-TCAA
* * * *
26219539 CCAGTCGAAGAGACAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGTGTGCTGCCGGTC
65 CCAGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGTGTGCTGTCGATC
* * * ***
26219604 CCGCTGCCACAACCCTCGGTCTGGCTGGG
130 CCGCTGTCGCAACCCTCGGTCTGACTCAA
* * * * *
26219633 GCTTAGACAAGGAATGAGCTCCCTATTCCTAAGCCAACCCACGAAACGGGCGTACGGGCAGTCAA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-AGTCAA
* * * *
26219698 CC-GATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCCGGTCCCCC-CTGCGTGCTGTCGA
65 CCAG-TCGGAGAGGCAAAATGCGCAAGCCGGGGATC-AGCCCAGTCCCCCTCTGTGTGCTGTCGA
* *
26219761 TCCTGCTGTCGCAACCCTCGGTCCGA-TCTAA
128 TCCCGCTGTCGCAACCCTCGGTCTGACTC-AA
* *
26219792 TCTTAGACTAGGAAT
1 GCTTAGACAAGGAAT
26219807 AAATTTTGTA
Statistics
Matches: 262, Mismatches: 62, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 93 0.35
159 154 0.59
160 12 0.05
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGTCAAC
CAGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGTGTGCTGTCGATCC
CGCTGTCGCAACCCTCGGTCTGACTCAA
Found at i:26220188 original size:26 final size:26
Alignment explanation
Indices: 26220147--26220199 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26220137 GCGATCCGAT
*
26220147 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26220173 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
26220199 C
1 C
26220200 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26220222 original size:354 final size:344
Alignment explanation
Indices: 26219555--26220202 Score: 868
Period size: 355 Copynumber: 1.9 Consensus size: 344
26219545 GAAGAGACAA
* *
26219555 AATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGTGTGCTGCCGGTCCCGCTGCCACAACCCT
1 AATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCGATCCCGCTGCCACAACCCT
* * * * * *
26219620 CGGTCTGGCTGGGGCTTAGACAAGGAATGAGCTCCCTATTCCTAAGCCAACCCACGAAACGGGCG
66 CGATCCGACTGGGGCTTAGACAAGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCA
* * * *
26219685 TACGGGCAGTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCCGGTCCCCCCTG
131 TACGGGCACTCAACCGATCGGAGAGGCAGAATACGCAAGCCAGGGATCGACCCCGATCCCCCCTG
* * * * *
26219750 CGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGATCTAATCTTAGACTAGGAATAAATTTTG
196 CGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCCAATCTTAGACTAGGAATAAACTCTG
*
26219815 TATGCTTAGACTGGGGATGAACTCCGTATGCCTATGTCAACCCACGAAACAAGCGCGTGGGCACC
261 TATGCTTAGACTAGGGATGAACTCCGTATGCCTATGTCAACCCACGAAACAAGCGCGTGGGCACC
26219880 CAATCGGATGGAGAGGCAT
326 CAATCGGATGGAGAGGCAT
*
26219899 AATGCGCAAGCTGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCGATCCCGCTGCCGGTCTGCT
1 AATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCGATCCCGCT----G-C--C-
* * *
26219964 ACCATAACCTTCGATCCGACTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCC
58 A-C--AACCCTCGATCCGACTGGGGCTTAGACAAGGAATG-AGCTCCCTATGCCTAAGCCAACCC
* * ** * *
26220028 ATGAAACGAGCATGCGGGCACTCAGTCGGTTGGAGAGGCAGAATACGCAAGCCAGGGATCGA-CC
119 ACGAAACGAGCATACGGGCACTCAACCGATCGGAGAGGCAGAATACGCAAGCCAGGGATCGACCC
* * * * *
26220092 CGATCCCTCTTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATGCGATCCGATCTTAGACTGG
184 CGATCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCCAATCTTAGACTAG
*
26220157 GAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTA
249 GAATAAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTA
26220203 ATTCAACTCG
Statistics
Matches: 258, Mismatches: 34, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
344 51 0.20
348 1 0.00
349 1 0.00
351 1 0.00
352 1 0.00
353 1 0.00
354 100 0.39
355 101 0.39
356 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (344 bp):
AATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCGATCCCGCTGCCACAACCCT
CGATCCGACTGGGGCTTAGACAAGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCA
TACGGGCACTCAACCGATCGGAGAGGCAGAATACGCAAGCCAGGGATCGACCCCGATCCCCCCTG
CGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCCAATCTTAGACTAGGAATAAACTCTG
TATGCTTAGACTAGGGATGAACTCCGTATGCCTATGTCAACCCACGAAACAAGCGCGTGGGCACC
CAATCGGATGGAGAGGCAT
Found at i:26220250 original size:354 final size:341
Alignment explanation
Indices: 26219475--26220271 Score: 834
Period size: 354 Copynumber: 2.3 Consensus size: 341
26219465 CTGATTCAAT
* * * * *
26219475 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAATCCATGAAACGAGCGTGCAGGTGTTGAGC
1 CTTAGACTGGG-ATGAACTCCGTATGCCTAATTCAA-CCATGAAACAAGC-TGCAGGTGCTCAGC
* * * *
26219540 CAGTCGA-AGAGACAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGTGTGCTGCCGGTC
63 C-GACGAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCGATC
* * * *
26219604 CCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACAAGGAATGAGCTCCCTATTCCTAAGCCA
127 CCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACAAGGAATGAGCTCCCTATGCCTAAGCCA
* * * * *
26219669 ACCCACGAAACGGGCGTACGGGCAGTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
192 ACCCACGAAACGAGCATACGGGCACTCAACCGATCGGAGAGGCAGAATACGCAAGCCAGGGATCG
* * * *
26219734 ACCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGATCTAATCTTAGA
257 ACCCCGATCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCCAATCTTAGA
* *
26219799 CTAGGAATAAATTTTGTATG
322 CTAGGAATAAACTCTGTATG
* ** *
26219819 CTTAGACTGGGGATGAACTCCGTATGCCT-ATGTCAACCCACGAAACAAGC-GC--GTGGGCACC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAT-TCAA-CCATGAAACAAGCTGCAGGTGCTCAGC
* * *
26219880 CAATCGGATGGAGAGGCATAATGCGCAAGCTGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCG
63 CGA-C-GA--GAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCG
* *
26219945 ATCCCGCTGCCGGTCTGCTACCATAACCTTCGATCCGACTGGGGCTTAGACATGGAATGTA-CTC
124 ATCCCGCT----G-C--C-A-C--AACCCTCGATCCGACTGGGGCTTAGACAAGGAATG-AGCTC
* * * ** * *
26220009 CGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTCAGTCGGTTGGAGAGGCAGAATAC
177 CCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCACTCAACCGATCGGAGAGGCAGAATAC
* * *
26220074 GCAAGCCAGGGATCGA-CCCGATCCCTCTTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATG
242 GCAAGCCAGGGATCGACCCCGATCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATC
* * *
26220138 CGATCCGATCTTAGACTGGGAATGAACTCTGTATG
307 CGATCCAATCTTAGACTAGGAATAAACTCTGTATG
* *
26220173 CTTAGACTAGGGATGAACTCCGTATGCCTAATTCAACTCGTGAAACAAGCATACAGGTGCTCAGC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAATTCAAC-CATGAAACAAGC-TGCAGGTGCTCAGC
* ** * *
26220238 CGACCAGAGAGGCAGGATGCTCAAGCCGAGGATC
63 CGACGAGAGAGGCAAAATGCGCAAGCCGGGGATC
26220272 GAACGGGTGG
Statistics
Matches: 368, Mismatches: 60, Indels: 40
0.79 0.13 0.09
Matches are distributed among these distances:
340 7 0.02
341 2 0.01
342 2 0.01
343 1 0.00
344 96 0.26
345 3 0.01
348 1 0.00
349 1 0.00
351 1 0.00
352 1 0.00
353 2 0.01
354 136 0.37
355 103 0.28
356 3 0.01
357 1 0.00
358 8 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (341 bp):
CTTAGACTGGGATGAACTCCGTATGCCTAATTCAACCATGAAACAAGCTGCAGGTGCTCAGCCGA
CGAGAGAGGCAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCCGATCCCGC
TGCCACAACCCTCGATCCGACTGGGGCTTAGACAAGGAATGAGCTCCCTATGCCTAAGCCAACCC
ACGAAACGAGCATACGGGCACTCAACCGATCGGAGAGGCAGAATACGCAAGCCAGGGATCGACCC
CGATCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCCAATCTTAGACTAG
GAATAAACTCTGTATG
Found at i:26220920 original size:26 final size:26
Alignment explanation
Indices: 26220881--26220931 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26220871 GTTCAAAATC
26220881 TTAGATTGGTAATGAGA-TCCGTATGT
1 TTAGATTGGTAATGA-ACTCCGTATGT
26220907 TTAGACTTGG-AATGAACTCCGTATG
1 TTAGA-TTGGTAATGAACTCCGTATG
26220932 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 1 0.04
26 18 0.78
27 4 0.17
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.35
Consensus pattern (26 bp):
TTAGATTGGTAATGAACTCCGTATGT
Found at i:26221711 original size:366 final size:367
Alignment explanation
Indices: 26221168--26222200 Score: 1036
Period size: 366 Copynumber: 2.9 Consensus size: 367
26221158 AAGATCGGCT
** ** *
26221168 CGGTCCCCCCTGGGTGCTGTCAATCCTGCTATCGCAACCCTCGATCCGATCTT-ATCTTAAACTG
1 CGGTCCCCCCTACGTGCTACCAATCCTGCTATCGCAACCCTCGATCCG-T-TTGATCTTAGACTG
* * *
26221232 GGAATGAACTCTATATGCTTAGACTGGAGATGAACTCAGTATGCCTAAGTCAACCCACAAAACGA
64 GGAATGAACTCCATATGCTTAGACTGGGGATGAACTCAGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * **
26221297 GCG-AGCGGGCGCTCAGCCAGCCGAAGTGGCCTACCAGAGAGTCATAATGTGTAA-CCTGGGGAT
129 GCGTAGCAGGCGCTCAGCCAGACGAAGAGGCCTACCAGAGAGGCATAATGCGCAAGCC-AAGGAT
* * * * * * * *
26221360 CAGCCCGTTCTCCCTCTACGTGTTACCGATCCCGCTGTTGGTGCTGCTGCCACAACCCTC-GATC
193 CAGCCCGGTCCCCCTCTACATGCTACCAATCCCGCTGTCGGTACTGCAGCCACAACCCTCAG-TC
* *
26221424 CGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAATGAGA-T-ATG
257 CGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGAGG
** * *
26221487 GCATTCAACCGATCGGAAAGCCAGAATGCACAAGCCGGGGATCGACC
322 GCACCCAACCGATCGGAAAGCCAGAATACACAAGCCAGGGATCG-CC
* * * *
26221534 CGGTCCCCCTTACGTGCTACCAATCCTGCTGTCGCATCCCTCGATCCAGTTTGATCTTAGACTGA
1 CGGTCCCCCCTACGTGCTACCAATCCTGCTATCGCAACCCTCGATCC-GTTTGATCTTAGACTGG
* *
26221599 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGTCTAAGTCAACCCACGAAACGAG
65 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAG
* * * *
26221664 CGTA-CAGGCGTTCAGCC-GACTAGAGAGGCC-AGTCGGAGAGGCATAATGCGCAAGCCAAGGAT
130 CGTAGCAGGCGCTCAGCCAGACGA-AGAGGCCTA-CCAGAGAGGCATAATGCGCAAGCCAAGGAT
* * * ** *
26221726 CAGCTCGGTCCCCCTTTGCATGCTGTCAATCCTGCTGTCGGTACTGCAGCCACAACCCTCAGTCC
193 CAGCCCGGTCCCCCTCTACATGCTACCAATCCCGCTGTCGGTACTGCAGCCACAACCCTCAGTCC
** *
26221791 GACTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGGGGG
258 GACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGAGGG
* * * * *
26221856 CACCCAATCGATCGGAGAGGCAGAATACGCAAGCTAGGGATCGCC
323 CACCCAACCGATCGGAAAGCCAGAATACACAAGCCAGGGATCGCC
* * * * * *
26221901 TGGTCCCCCCTGCGTGCTATCGATCTTGCTATCGCAACCCTCGATCCGGTCTGATCTTAGACTGG
1 CGGTCCCCCCTACGTGCTACCAATCCTGCTATCGCAACCCTCGATCC-GTTTGATCTTAGACTGG
* *
26221966 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
65 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAG
** * ** * * **
26222031 CGT-GTGGGCGCT----CAGTC-----GG--T--TGGAGAGGTATAATGCGTAAGCCGGGGATCA
130 CGTAGCAGGCGCTCAGCCAGACGAAGAGGCCTACCAGAGAGGCATAATGCGCAAGCCAAGGATCA
* * * * * * * **
26222082 GTCCGGTCCCCC-CGACATGCTACCGATCCCGCTGCCAGTCCTGCTA-CCACAACCCTCGGTTTG
195 GCCCGGTCCCCCTCTACATGCTACCAATCCCGCTGTCGGTACTGC-AGCCACAACCCTCAGTCCG
* * * * *
26222145 GCTAGGGCTTAGACGTGAAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAG
259 ACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAG
26222201 TGTGCGATTG
Statistics
Matches: 557, Mismatches: 97, Indels: 39
0.80 0.14 0.06
Matches are distributed among these distances:
353 87 0.16
354 37 0.07
358 2 0.00
363 1 0.00
364 2 0.00
365 6 0.01
366 254 0.46
367 132 0.24
368 36 0.06
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.21
Consensus pattern (367 bp):
CGGTCCCCCCTACGTGCTACCAATCCTGCTATCGCAACCCTCGATCCGTTTGATCTTAGACTGGG
AATGAACTCCATATGCTTAGACTGGGGATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAGC
GTAGCAGGCGCTCAGCCAGACGAAGAGGCCTACCAGAGAGGCATAATGCGCAAGCCAAGGATCAG
CCCGGTCCCCCTCTACATGCTACCAATCCCGCTGTCGGTACTGCAGCCACAACCCTCAGTCCGAC
TGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTGAGGGCAC
CCAACCGATCGGAAAGCCAGAATACACAAGCCAGGGATCGCC
Found at i:26221992 original size:26 final size:26
Alignment explanation
Indices: 26221956--26222008 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26221946 CCGGTCTGAT
26221956 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26221982 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26222008 C
1 C
26222009 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26222029 original size:367 final size:366
Alignment explanation
Indices: 26221136--26222033 Score: 1063
Period size: 366 Copynumber: 2.4 Consensus size: 366
26221126 CAGCCGGCTA
* * * * * *
26221136 GAGAGGCAGAATAAGCAAG-TCGAAGATCGGCTCGGTCCCCCCTGGGTGCTGTCAATCCTGCTAT
1 GAGAGGCAGAATACGCAAGCTAG-GGATCGCCT-GGTCCCCCCTGCGTGCTATCAATCCTGCTAT
* * * * *
26221200 CGCAACCCTCGATCCGATCTTATCTTAAACTGGGAATGAACTCTATATGCTTAGACTGGAGATGA
64 CGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGA
* * * *
26221265 ACTCAGTATGCCTAAGTCAACCCACAAAACGAGCG-AGCGGGCGCTCAGCCAGCCGAAGTGGCCT
129 ACTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTAGCAGGCGCTCAGCCAGACGAAGAGGCCT
* * * ** * * * * *
26221329 ACCAGAGAGTCATAATGTGTAACCTGGGGATCAGCCCGTTCTCCCTCTACGTGTTACCGATCCCG
194 ACCAGAGAGGCATAATGCGCAACCTAAGGATCAGCCCGGTCCCCCTCTACATGCTACCAATCCCG
* * *
26221394 CTGTTGGTGCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGTACTCCGTATG
259 CTGTCGGTACTGCAGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGTACTCCGTATG
* * **
26221459 CCTAAGCCAACCCATGAAATGAGATATGGCATTCAACCGATCG
324 CCTAAGCCAACCCACGAAATGAGATAGGGCACCCAACCGATCG
* * * * ** * * * * *
26221502 GAAAGCCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCTTACGTGCTACCAATCCTGCTGTC
1 GAGAGGCAGAATACGCAAGCTAGGGATCG-CCTGGTCCCCCCTGCGTGCTATCAATCCTGCTATC
* * * *
26221567 GCATCCCTCGATCCAGTTTGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGGATGAA
65 GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAA
* * * *
26221632 CTCTGTATGTCTAAGTCAACCCACGAAACGAGCGTA-CAGGCGTTCAGCC-GACTAGAGAGGCC-
130 CTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTAGCAGGCGCTCAGCCAGACGA-AGAGGCCT
* * * * * **
26221694 AGTCGGAGAGGCATAATGCGCAAGCC-AAGGATCAGCTCGGTCCCCCTTTGCATGCTGTCAATCC
194 A-CCAGAGAGGCATAATGCGCAA-CCTAAGGATCAGCCCGGTCCCCCTCTACATGCTACCAATCC
* **
26221758 TGCTGTCGGTACTGCAGCCACAACCCTC-AGTCCGACTGGGGCTTAGATGTGGAATGTACTCCGT
257 CGCTGTCGGTACTGCAGCCACAACCCTCGA-TCCGACTGGGGCTTAGACATGGAATGTACTCCGT
* *
26221822 ATGCCTAAGCCAACCCACGAAATGAGAGTGGGGGCACCCAATCGATCG
321 ATGCCTAAGCCAACCCACGAAATGAGA-T-AGGGCACCCAACCGATCG
* *
26221870 GAGAGGCAGAATACGCAAGCTAGGGATCGCCTGGTCCCCCCTGCGTGCTATCGATCTTGCTATCG
1 GAGAGGCAGAATACGCAAGCTAGGGATCGCCTGGTCCCCCCTGCGTGCTATCAATCCTGCTATCG
26221935 CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
66 CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
* *
26222000 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
131 TCAGTATGCCTAAGTCAACCCACGAAACGAGCGT
26222034 GTGGGCGCTC
Statistics
Matches: 441, Mismatches: 82, Indels: 17
0.82 0.15 0.03
Matches are distributed among these distances:
365 5 0.01
366 273 0.62
367 127 0.29
368 36 0.08
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.21
Consensus pattern (366 bp):
GAGAGGCAGAATACGCAAGCTAGGGATCGCCTGGTCCCCCCTGCGTGCTATCAATCCTGCTATCG
CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
TCAGTATGCCTAAGTCAACCCACGAAACGAGCGTAGCAGGCGCTCAGCCAGACGAAGAGGCCTAC
CAGAGAGGCATAATGCGCAACCTAAGGATCAGCCCGGTCCCCCTCTACATGCTACCAATCCCGCT
GTCGGTACTGCAGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCC
TAAGCCAACCCACGAAATGAGATAGGGCACCCAACCGATCG
Found at i:26222828 original size:26 final size:26
Alignment explanation
Indices: 26222799--26222848 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26222789 CCGATCCGAT
26222799 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
**
26222825 CTTAGACTGGGGGTGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
26222849 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:26223304 original size:367 final size:367
Alignment explanation
Indices: 26222576--26223611 Score: 1280
Period size: 367 Copynumber: 2.8 Consensus size: 367
26222566 ATCGACTCGA
* * * ** *
26222576 TCCCCCTCTGCGTGCTACCGATCTCGCTGCCGGTCCTGCTACCACAACCCTCGGCTCAGCTGGGG
1 TCCCCCTCTACGTGCTATCGATCCCGCTGCCGGTCCTGCTACCACAACCCTCGATTCGGCTGGGG
* * *
26222641 CTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGCTCAGC
66 CTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * ** ** ** *
26222706 AGGCCAGAGAGGTAGAGTGCACAAGCCAAGGATCTA-TCTAGTCCTTCCTGCGTGCTGCCGATCC
131 CGGCCGGAGAGGTAGAATGCACAAGCTGAGGATC-AGTCCGGTCCCCCCTGCGTGCTGTCGATCC
*
26222770 TGCTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGG
195 TGCTATCGCAACCCTCGATCCG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *** * *
26222835 GGGTGAACTCCGTATGCCTAAGTCAACTAACAAAACGAGCGTGCGGGTGCTCAGCCGGCCGAAGA
259 GGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGACCGCTCAACCGACCGAAGA
* * *
26222900 GGCCGATCGGAGAGGCATAATGCACAAGTCGGGGATCAGCCC-G
324 GGCAGACCGGAGAGGCATAATGCACAAGTCAGGGATCAGCCCAG
* * * * *
26222943 ATCTCTCTCTACGTGCTATCGATCCCGCTACCGGTCCTACT-TCACAACCCTCGATTCGGCTGGG
1 -TCCCCCTCTACGTGCTATCGATCCCGCTGCCGGTCCTGCTACCACAACCCTCGATTCGGCTGGG
* *
26223007 GCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
65 GCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
26223072 CCGACCGGAGAGGTAAAATGCACAAGCTGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCT
130 CCGGCCGGAGAGGTAGAATGCACAAGCTGAGGATCAGTCCGGTCCCCCCTGCGTGCTGTCGATCC
* *** *
26223137 TGCTGTCGCAACCCTCGATCCAGTTTAATCTTGGACTGGGAATGAACTCCGTATGCTTAGACTGG
195 TGCTATCGCAACCCTCGATCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
26223202 GGATGAACTCCGTATCCCTAAGTCAACCAATGAAACGAGTC-TGCGACCGCTCAACCGATCGGAG
259 GGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAG-CGTGCGACCGCTCAACCGACCGAAG
* **
26223266 AGGTAGACCGGAGAGGCATAATGCGTAAGTCAGGGATCAGCCCAG
323 AGGCAGACCGGAGAGGCATAATGCACAAGTCAGGGATCAGCCCAG
* * * *
26223311 TCCCCCTCTACGTGC-AGTCGATCCTGCTGCCGGTCCTGCTGCCACAACCTTC-AGTCCGGCTGG
1 TCCCCCTCTACGTGCTA-TCGATCCCGCTGCCGGTCCTGCTACCACAACCCTCGA-TTCGGCTGG
* *
26223374 GGCTTAGACGTGGAATGTACT-CGTATGCCTAAGCCAACCCATGAAACGAGTGTGCAGGCGCTCA
64 GGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
26223438 GCCGGTCGGAGAGGCAGAATGCGCAAGCTGAGGATCAGTCCGGTCCCCCCTGCGTGTTGTTGATC
129 GCCGGCCGGAGAGGTAGAATGCACAAGCTGAGGATCAGTCCGGTCCCCCCTGCGTGCTGTCGATC
*
26223503 CTGCTATCGCAACCGTC-AGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
194 CTGCTATCGCAACCCTCGA-TCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
*
26223567 GGGGATGAACTCCG-ATTGCCTAAGTCAACCCACGAAACGAGCGTG
257 GGGGATGAACTCCGTA-TGCCTAAGTCAACCAACGAAACGAGCGTG
26223612 TGGGTGCTCA
Statistics
Matches: 565, Mismatches: 93, Indels: 21
0.83 0.14 0.03
Matches are distributed among these distances:
366 4 0.01
367 488 0.86
368 73 0.13
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (367 bp):
TCCCCCTCTACGTGCTATCGATCCCGCTGCCGGTCCTGCTACCACAACCCTCGATTCGGCTGGGG
CTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGTAGAATGCACAAGCTGAGGATCAGTCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTATCGCAACCCTCGATCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGG
ATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGACCGCTCAACCGACCGAAGAGG
CAGACCGGAGAGGCATAATGCACAAGTCAGGGATCAGCCCAG
Found at i:26224497 original size:25 final size:26
Alignment explanation
Indices: 26224449--26224500 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
26224439 CTAGCTCGAT
*
26224449 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
26224475 CTTAGACTAGG-ATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26224500 C
1 C
26224501 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26225011 original size:367 final size:364
Alignment explanation
Indices: 26224445--26225283 Score: 1006
Period size: 367 Copynumber: 2.3 Consensus size: 364
26224435 CAATCTAGCT
26224445 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGATGAACTTCGTATGCCTAAGTCAA
1 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGATGAACTTCGTATGCCTAAGTCAA
* * *
26224510 CCCATGAAATGAGTGTGCGGGCGTTCAGCCGATCGGAAAGGCTGATCGAAGAGGCATAATGCGCA
66 CCCATGAAATGAGTGTGCGGGCGCTCAACCGATCAGAAAGGCTGATCGAAGAGGCATAATGCGCA
* * * * * * * *
26224575 AGTCGGGGATCAGCCTAGTCCCCCTCTACGTGCTGTCGATCTCGCTGCTGGTCCTGCTGCCATAA
131 AGTCGGGGATCAGCCCAGTCCCCCTCTACGTGCTGTCAATCTCACTACCGATCCTGCTACCACAA
* *
26224640 CCCTC-GGTCCGGTTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCATAAAAC
196 CCCTCGGGT-CGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATAAAAC
** * * *
26224704 AAGCATGCGGGCGCTCAGCTGGCCGAAGAGGTAGAATGCTCAAG-TCGGGGATCGACCCGATCCC
260 AAGCATGC-GG-GCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCT-AGGGATCGACCCGATCCC
* * **** *
26224768 CCCTGCATACTGCTGTTCTTGCTGTTGCAACCCTCAATCCGGTT
322 CCCTGCATACTG-TGATCCTGCTACCACAACCCTCAATCCGGTC
* * *
26224812 TGATCTTATATTGGGAATGAACTCCGTATGCTTAGACTAGGATGAAC-TCTGTATGCCTAAGTCA
1 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGATGAACTTC-GTATGCCTAAGTCA
* * * * *
26224876 ACCCATGAAATGAGCGTGCGAGCGCTCAACC-AGTCAGAAAGG-TCGGTCGGAGAGGCATTATGC
65 ACCCATGAAATGAGTGTGCGGGCGCTCAACCGA-TCAGAAAGGCT-GATCGAAGAGGCATAATGC
* * * *
26224939 GCAAG-CTGGGGATCAGCCCGGTCCCCTTCTACGTGTTGTCAATCTCACTACCGATTCTGCTACC
128 GCAAGTC-GGGGATCAGCCCAGTCCCCCTCTACGTGCTGTCAATCTCACTACCGATCCTGCTACC
* *
26225003 ACAACCCTCGGGTCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCTAACCCATGA
192 ACAACCCTCGGGTCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATAA
* * ** * * * *
26225068 AACGAGCGTGCGGGCTCAGCCAGTTGGAGAGGCAGAATGCGCAAGCTATGGATCGGCCCGGTCCC
257 AACAAGCATGCGGGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCC
* * * * *
26225133 CCCTGCGTGCTGTGATCCTGCTACCATAACCCTCGATCTGGTC
322 CCCTGCATACTGTGATCCTGCTACCACAACCCTCAATCCGGTC
* * *
26225176 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGTGGATGAACTTCGTATGTCTAAGTCA
1 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-AGGATGAACTTCGTATGCCTAAGTCA
* * * * *
26225241 ACCCACGAAACGAGTGTACGGGCGCTCAGCCGACCAGAAAGGC
65 ACCCATGAAATGAGTGTGCGGGCGCTCAACCGATCAGAAAGGC
26225284 AGGATGCGCA
Statistics
Matches: 397, Mismatches: 65, Indels: 21
0.82 0.13 0.04
Matches are distributed among these distances:
364 55 0.14
365 103 0.26
366 11 0.03
367 225 0.57
368 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (364 bp):
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGATGAACTTCGTATGCCTAAGTCAA
CCCATGAAATGAGTGTGCGGGCGCTCAACCGATCAGAAAGGCTGATCGAAGAGGCATAATGCGCA
AGTCGGGGATCAGCCCAGTCCCCCTCTACGTGCTGTCAATCTCACTACCGATCCTGCTACCACAA
CCCTCGGGTCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATAAAACA
AGCATGCGGGCTCAGCCAGCCGAAGAGGCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCCCT
GCATACTGTGATCCTGCTACCACAACCCTCAATCCGGTC
Found at i:26226440 original size:26 final size:26
Alignment explanation
Indices: 26226411--26226460 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26226401 CTGGTTCGAT
26226411 CTTAGACTGGGAATGAAATCTGTAAG
1 CTTAGACTGGGAATGAAATCTGTAAG
* *
26226437 CTTAGACTGGGGATGAACTCTGTA
1 CTTAGACTGGGAATGAAATCTGTA
26226461 TGCCTATTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCTGTAAG
Found at i:26226807 original size:26 final size:26
Alignment explanation
Indices: 26226778--26226830 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26226768 CCGATCCGAT
26226778 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACTTGGG-ATGAACTCCGTATG
26226804 CTTAGACTTGGGATGAACTCCGTATG
1 CTTAGACTTGGGATGAACTCCGTATG
26226830 C
1 C
26226831 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTTGGGATGAACTCCGTATG
Found at i:26227897 original size:159 final size:157
Alignment explanation
Indices: 26227536--26228038 Score: 471
Period size: 158 Copynumber: 3.2 Consensus size: 157
26227526 ACCTACGTAT
*
26227536 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * * *
26227601 CCGGTCAGAGAGGCAGAACGCGCAAGCC-AGGGATCGACCTGGTCCCCCT-TGCGTGCTGTCGAT
66 CCGGT-AGAGAGGCAGAATGCGCAAGCCGA-GGATCGGCCCGATCCCCCTCTACGTGCTGTCGAT
* * * * *
26227664 CCTACTACCATAACCCTTGGTCCGTTCCGA
129 CC-CCTGCCACAACCCTCGGTCCGCTCCGA
* * * * * * *
26227694 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAATCCACGAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCA
* * *
26227758 GTCGGTAGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGT
65 GCCGGTAG-AGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTACGTGCTGTCGAT
* * *
26227823 CCCGCTGCCACAACCCTCGGTCTGACT-GGG
129 CCC-CTGCCACAACCCTCGGTCCG-CTCCGA
* * * * *
26227853 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGAGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
** * * ** *
26227918 CCGGCCGGAGAGGTAGAATGCGTAAATCGGGGATCGGCCC-AGTCCCCC-CTACGTGCTGTCGAT
66 CCGG-TAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGA-TCCCCCTCTACGTGCTGTCGAT
* * * **
26227981 CCTCCTGCCGCAACCCTCGATCCGATCAAA
129 CC-CCTGCCACAACCCTCGGTCCGCTCCGA
* *
26228011 TCTTAGAC-TAGGAATGAACTACGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
26228039 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 56, Indels: 24
0.78 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 150 0.54
159 119 0.43
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
CCGGTAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTACGTGCTGTCGATCC
CCTGCCACAACCCTCGGTCCGCTCCGA
Found at i:26228053 original size:26 final size:26
Alignment explanation
Indices: 26228012--26228064 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26228002 CCGATCAAAT
26228012 CTTAGACTAGGAATGAACTACGTATG
1 CTTAGACTAGGAATGAACTACGTATG
* * *
26228038 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTACGTATG
26228064 C
1 C
26228065 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:26228636 original size:287 final size:285
Alignment explanation
Indices: 26228120--26228637 Score: 707
Period size: 287 Copynumber: 1.8 Consensus size: 285
26228110 AAAGGTCGGT
** *
26228120 CGAAGAGGCATAATGTGCAAGCCGAGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCTACCG
1 CGAAGAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTACATGCTGTCGATC-ACCG
* * * *
26228185 TCGGTCCTGCTACCACAACCCTTGATCCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCT
65 TCGGTCCTACTACCACAACCCTCGATCCGGCTGGGGCCTAGACGTGGAATGTACTCCATATGCCT
** * * * *
26228250 AAGCCAACACACGAAACGAGCGTGCAGGCGTTCAGCTGGCCGGAGAGGTAGAATGCACAAGTTGG
130 AAGCCAACACACGAAACGAGCGTGCAGGCACTCAACCGGCCGGAGAGGCAGAATGCACAAGCTGG
*** *
26228315 GGATCGACTTGATCCCCCCTGTGAGCTATCGATCCTGTTGCTCAACCCTCAAAACGAGCATGCGA
195 GGATCGACCCAATCCCCCCTGCGAGCTATCGATCCTGTTGCTCAACCCTCAAAACGAGCATGCGA
26228380 GCGCTAAGCCGGCTAGAGAGGCTGAC
260 GCGCTAAGCCGGCTAGAGAGGCTGAC
* *
26228406 CGAAGAGGCATAATGCACAAGCC-AGGGATCAGCTCGGTCCCCCTCTGCATGCTGTCGATC-CCG
1 CGAAGAGGCATAATGCACAAGCCGA-GGATCAGCCCGGTCCCCCTCTACATGCTGTCGATCACCG
* * *
26228469 CTACCGGTCCTACTGCCACAACCCTCGGTCCGGTTGGGGCCTAGACGTGGAATGTACTCCATATG
65 -T--CGGTCCTACTACCACAACCCTCGATCCGGCTGGGGCCTAGACGTGGAATGTACTCCATATG
* * * **
26228534 CCTAAGCCAACCCACGAAACGAGTGTGCAGGCACTCAACCGGCCGGTGAGGCAGAATGCGTAAGC
127 CCTAAGCCAACACACGAAACGAGCGTGCAGGCACTCAACCGGCCGGAGAGGCAGAATGCACAAGC
* * *
26228599 TGGGGATCGGCCCAATCCCCCCTGCGTGCTGTCGATCCT
192 TGGGGATCGACCCAATCCCCCCTGCGAGCTATCGATCCT
26228638 ACTATCGCAA
Statistics
Matches: 198, Mismatches: 30, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
284 3 0.02
285 2 0.01
286 53 0.27
287 140 0.71
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (285 bp):
CGAAGAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTACATGCTGTCGATCACCGT
CGGTCCTACTACCACAACCCTCGATCCGGCTGGGGCCTAGACGTGGAATGTACTCCATATGCCTA
AGCCAACACACGAAACGAGCGTGCAGGCACTCAACCGGCCGGAGAGGCAGAATGCACAAGCTGGG
GATCGACCCAATCCCCCCTGCGAGCTATCGATCCTGTTGCTCAACCCTCAAAACGAGCATGCGAG
CGCTAAGCCGGCTAGAGAGGCTGAC
Found at i:26228702 original size:26 final size:26
Alignment explanation
Indices: 26228666--26228718 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26228656 CCGGTCCGAT
26228666 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
* * *
26228692 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
26228718 C
1 C
26228719 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:26228790 original size:184 final size:184
Alignment explanation
Indices: 26228530--26228876 Score: 453
Period size: 184 Copynumber: 1.9 Consensus size: 184
26228520 ATGTACTCCA
* ** * ** * *
26228530 TATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCACTCAACCGGCCGGTGAGGCAGAATGCGT
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCAACCAGAAAGGCAGAATACGC
* * *
26228595 AAGCTGGGGATCGGCCCAATCCCCCCTGCGTGCTGTCGATCCTACTATCGCAACCCTC-GATCCG
66 AAGCTGGGGATCGACCCAATCCCCCCTGCGTGCTGTCGATCCTACTACCACAACCCTCTG-TCCG
* *
26228659 GTCCGATCTTAGACTGGGAATGAACTTCATATGCTTAGATTGGGGATGAACTTCG
130 GTCCGATCATAGACTGGGAATAAACTTCATATGCTTAGATTGGGGATGAACTTCG
* * * * *
26228714 TATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCAACCAGAAAGGCAGGATACGC
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCAACCAGAAAGGCAGAATACGC
* * * * *
26228779 AAGTTGGGGATCGACCCGATCCCCCCTGCGTGCTGTTGATCCTACTACCACAACCTTCTGTCTGG
66 AAGCTGGGGATCGACCCAATCCCCCCTGCGTGCTGTCGATCCTACTACCACAACCCTCTGTCCGG
* *
26228844 TCCGATCATAGATTGGGAATAAACTTCGTATGC
131 TCCGATCATAGACTGGGAATAAACTTCATATGC
26228877 ATAAGTCAAC
Statistics
Matches: 137, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
184 136 0.99
185 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.21
Consensus pattern (184 bp):
TATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCAACCAGAAAGGCAGAATACGC
AAGCTGGGGATCGACCCAATCCCCCCTGCGTGCTGTCGATCCTACTACCACAACCCTCTGTCCGG
TCCGATCATAGACTGGGAATAAACTTCATATGCTTAGATTGGGGATGAACTTCG
Found at i:26229195 original size:26 final size:26
Alignment explanation
Indices: 26229166--26229218 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26229156 CCGATCTGAT
*
26229166 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
26229192 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
26229218 C
1 C
26229219 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:26229592 original size:368 final size:359
Alignment explanation
Indices: 26229012--26229970 Score: 1027
Period size: 359 Copynumber: 2.6 Consensus size: 359
26229002 ACTGGGGCTG
* * ** * ** *
26229012 AGACGTGGAATG-AGCTCCCTTTGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCG
1 AGACGTGGAATGTA-CTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCAATCAACCG
* ** ** * ** * ** ** *
26229076 GCTAGAGAGGCAGAATGCGCAAGCCAAGGATCGAACTGGT-CCCCCTGCGTGCTGCTGATCCTAC
65 ACCGGAGAGGCAGAATGCGCAAGCTGAGGATTGGCCCGGTCCCCCCCACGTGCCACCGATCCTAC
* * *
26229140 TGCCGGAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGA
130 TGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGA
* * * *
26229205 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG-AGTACGAGTGCTCAACCGACCAGAGAGG
195 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCA-TACGAGCGCTCAACAGACCAGAAAGG
* * * * *
26229269 CTAGTCGGAAAGGCATAATGCGCAAG-CCAAGGATC-AGCCCGATCCCCCTCTACGTGCTGCCGA
259 CCAGTCGGAAAGGCAAAATACGCAAGTCCAA-GATCAAG-CCGAT----C-CGA-GAG--G-C-A
** * * ** *
26229332 TCCCGC-TGTCGGTCTTGCTGCCATAACCCTTGGTCCGGCTAGGG-CTT
312 TAACGCGTGCCGGTCTTACCACCATAACCCTCGGTCCGG-TAGGGCCTT
* * *
26229379 AGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCACTCAATCGA
1 AGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCAATCAACCGA
* * * * *
26229444 CCGGAGAGGTAGACTGCGCAAGCCT-AGGATTGGTCCGGTCCCCCCTACGTGCCACCGATCCT-G
66 CCGGAGAGGCAGAATGCGCAAG-CTGAGGATTGGCCCGGTCCCCCCCACGTGCCACCGATCCTAC
* * * * *
26229507 TGGTCGCAACCCTCGATCCGGTCCGATCTTACACTGGGATTGAACTCTGTATGCTTCGACTGGGG
130 T-GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGG
* * * * *
26229572 ATGAACTCCGTATACCTAAGTCAACCCACGAAATGAGCATCCGGGCGCTCAGCAGACCAGAAAGG
194 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGAGCGCTCAACAGACCAGAAAGG
* * * * *
26229637 CCAGTCGGAGAGGCAAAATATGCAAGTCGAAGATCAAGCCGATCGGAGAGGCATAATGCGTGCCG
259 CCAGTCGGAAAGGCAAAATACGCAAGTCCAAGATCAAGCCGATCCGAGAGGCATAACGCGTGCCG
* *
26229702 GTCTTACCACCATAACCCTCGGTCTGGTTGGGCCTT
324 GTCTTACCACCATAACCCTCGGTCCGGTAGGGCCTT
*
26229738 AGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAATCAACCGA
1 AGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCAATCAACCGA
* * ** *
26229803 TCGGAGAGGCAGAATGTGCAAGCTGAGGATTGGCCCGGTCCCCCCCGTGTGCTACCGATCCTACT
66 CCGGAGAGGCAGAATGCGCAAGCTGAGGATTGGCCCGGTCCCCCCCACGTGCCACCGATCCTACT
* *
26229868 GCCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGGAT
131 GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGAT
*
26229933 GAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCAT
196 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAT
26229971 GTGGGCGCTC
Statistics
Matches: 497, Mismatches: 84, Indels: 30
0.81 0.14 0.05
Matches are distributed among these distances:
358 10 0.02
359 234 0.47
360 2 0.00
362 2 0.00
363 1 0.00
364 1 0.00
367 82 0.16
368 159 0.32
369 6 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (359 bp):
AGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCAATCAACCGA
CCGGAGAGGCAGAATGCGCAAGCTGAGGATTGGCCCGGTCCCCCCCACGTGCCACCGATCCTACT
GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGAT
GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGAGCGCTCAACAGACCAGAAAGGCC
AGTCGGAAAGGCAAAATACGCAAGTCCAAGATCAAGCCGATCCGAGAGGCATAACGCGTGCCGGT
CTTACCACCATAACCCTCGGTCCGGTAGGGCCTT
Found at i:26229929 original size:26 final size:26
Alignment explanation
Indices: 26229893--26229945 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26229883 CCGGTCTGAT
26229893 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
* *
26229919 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
26229945 C
1 C
26229946 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:26231014 original size:158 final size:157
Alignment explanation
Indices: 26230518--26231014 Score: 493
Period size: 157 Copynumber: 3.2 Consensus size: 157
26230508 TCTATATGCT
* *
26230518 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCA-GGCACTCAGCC
1 TAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG-AGGGAACTCAGTC
* * * * * *
26230582 AGCC-GAAGAGGTAGAATGCGCCAGCCAGGGATCGACCCGATCCCCCCTACATGCTGTCGATCCT
64 GGCCGGAA-AGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTTACGTACTGTCGATCCT
* *
26230646 GCTACCACAA-CCTCGGTCCGGTCTGATCT
128 GCTGCCACAACCCTCGGTCCGGTCTGATCA
* * * * * * * *** *
26230675 TAGACTAGAAAAGAACTCTGTATGCATAAGTCAACCCATGAAACGAGAGTGTGGGTGTTGAGTCG
1 TAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGAACTCAGTCG
* * * * * * *
26230740 ACTGAAAAGGCATAATGCGCAAGCCGGGGATCGACCC-ATCCCCCTTTGCGTACTGTCGGTCC-G
65 GCCGGAAAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-TTACGTACTGTCGATCCTG
* * **
26230803 CTGCCACAACCCTCGATCCAG-CTGGGGCA
129 CTGCCACAACCCTCGGTCCGGTCT-GATCA
* * * * * *
26230832 TAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAATGGGCGAGAGGGAACTCAATCG
1 TAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGAACTCAGTCG
* * * *
26230897 GCCGGAAAGGTAGAATGCACAAGCTGGGGATTGGCCCGATCCCCCTTACGTACTGTCGATCCTGC
65 GCCGGAAAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTTACGTACTGTCGATCCTGC
*
26230962 TGCCGCAACCCTCGGTCCGGTCTGATCA
130 TGCCACAACCCTCGGTCCGGTCTGATCA
26230990 TAGACTGGGAATGAACTCCGTATGC
1 TAGACT-GGAATGAACTCCGTATGC
26231015 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 66, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
156 19 0.07
157 189 0.72
158 53 0.20
159 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (157 bp):
TAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGAACTCAGTCGG
CCGGAAAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTTACGTACTGTCGATCCTGCT
GCCACAACCCTCGGTCCGGTCTGATCA
Found at i:26231039 original size:26 final size:26
Alignment explanation
Indices: 26230990--26231040 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26230980 GGTCTGATCA
*
26230990 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
* *
26231016 TAGACTGGGGATGAACTCTATATGC
1 TAGACTGGGAATGAACTCCATATGC
26231041 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:26231373 original size:26 final size:26
Alignment explanation
Indices: 26231334--26231384 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26231324 GGTCCGATCT
*
26231334 TAGACTGGGAATGAACTCTGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
*
26231360 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
26231385 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:26231720 original size:26 final size:26
Alignment explanation
Indices: 26231691--26231743 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26231681 CCGATCCGAT
26231691 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* * *
26231717 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
26231743 C
1 C
26231744 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:26232614 original size:159 final size:159
Alignment explanation
Indices: 26232312--26232775 Score: 395
Period size: 159 Copynumber: 2.9 Consensus size: 159
26232302 AGCTTAGTAT
* *
26232312 GCTTAGACATGGAATGAACTCCGTATGCCTCAA-CCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCT-AAGACAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * *
26232376 GTCAGCCGAAGAGGTAGAATGTGCAAGCCGGGGATCGTCCCAGTCCCCCCCTACGTGCTATCGAT
65 GCCAGCCGAAGAGGCAGAATGTGCAAGCCGGGGATCGTCCCAGTCCCCCCCGACATGCTACCGAT
* * *
26232441 CCTACTATCGCAACCCTCCGTCCGATCT-GA
130 CCCACTACCACAACCCTCCGTCCGA-CTGGA
* * * *
26232471 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCGGGCACTCA
* * * ** *
26232535 GCC-GATCGAAGAGGCATAATGTGCAAGCTGGGGATCAG-CCC-GATCCCCGTCGGCATGCTACC
65 GCCAG-CCGAAGAGGCAGAATGTGCAAGCCGGGGATC-GTCCCAG-TCCCCCCCGACATGCTACC
* ** * * *
26232597 GGTCCCGTTACCACAACCCTCGGTCTGACTGGG
127 GATCCCACTACCACAACCCTCCGTCCGACTGGA
* * * * * * * *
26232630 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGACAACCCATGAAACAAGCTTGCGGACGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * * * *
26232695 CCA-CCTGGAGAGACAGAATGCGTAAGCTGGGGATCGGCCCGGTTCCCCCTG-CATGCTACCGAT
66 CCAGCC-GAAGAGGCAGAATGTGCAAGCCGGGGATCGTCCCAGTCCCCCCCGACATGCTACCGAT
* **
26232758 CCTACTACCGTAACCCTC
130 CCCACTACCACAACCCTC
26232776 GATCTGGTCC
Statistics
Matches: 242, Mismatches: 52, Indels: 23
0.76 0.16 0.07
Matches are distributed among these distances:
158 33 0.14
159 206 0.85
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCGGGCACTCAG
CCAGCCGAAGAGGCAGAATGTGCAAGCCGGGGATCGTCCCAGTCCCCCCCGACATGCTACCGATC
CCACTACCACAACCCTCCGTCCGACTGGA
Found at i:26232825 original size:26 final size:26
Alignment explanation
Indices: 26232789--26232841 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26232779 CTGGTCCGAT
**
26232789 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACACTGTATG
*
26232815 CTTAGACTGGGGATGAACACTGTATG
1 CTTAGACTGGGAATGAACACTGTATG
26232841 C
1 C
26232842 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACTGTATG
Found at i:26233470 original size:311 final size:311
Alignment explanation
Indices: 26232902--26233488 Score: 788
Period size: 311 Copynumber: 1.9 Consensus size: 311
26232892 CCGACTAGAA
* * * *
26232902 AGGCATAATGTGCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGTTATCAATCTCGCTGTCCG
1 AGGCATAATGTGCAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTACCAATCTCGCTGTCCA
* * **
26232967 GTCTTGCTACCACAACCCTTGGTCCAACTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAG
66 GTCCTGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAG
* * * * *
26233032 CCAAACCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTGAGAGGCAGAATGCGCAAGCTGGAGAT
131 CCAAACCACGAAACGAGCATGCGGGCACTCAGCCGCCGGAGAGGCAGAATGCGCAAGCAGGAGAT
* * ** *
26233097 TGACCTGATCCTCCCTGCGTGCTACCGATCCTGTTACCACAACCCTCGATCTGGTTTGATCTTAG
196 CGACCTGATCCTCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCGATCCAGTCTGATCTTAG
26233162 ACTAGGAATGAACTCCGTATGAGTGCTACCGATCGAAAAGGCCGGTCAGAG
261 ACTAGGAATGAACTCCGTATGAGTGCTACCGATCGAAAAGGCCGGTCAGAG
* * *
26233213 AGGCATAATGTGCAAGCTGAGGATCAGCCCGGTCCCCCTCTGCGTGCTACCGATCTCGCTG-CTA
1 AGGCATAATGTGCAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTACCAATCTCGCTGTCCA
* ** *
26233277 GTCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATTGAATGTACTCCGTATGCCTAAG
66 GTCCTGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAG
*
26233342 CC-AACCGACGAAACGAGCATGCGGGCACTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCAGG-
131 CCAAACC-ACGAAACGAGCATGCGGGCACTCAGCCG-CCGGAGAGGCAGAATGCGCAAG-CAGGA
* * * ** * *
26233405 GATCGA-CTCGGTCC-CTCCTGTGTGCTGCCGATCCTGCTGTCGCAACCCTTGATCCAGTCTGAT
193 GATCGACCT-GATCCTC-CCTGCGTGCTACCGATCCTGCTACCACAACCCTCGATCCAGTCTGAT
*
26233468 CTTAGACTGGGAATGAACTCC
256 CTTAGACTAGGAATGAACTCC
26233489 ATAAGCTTAG
Statistics
Matches: 237, Mismatches: 34, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
309 4 0.02
310 88 0.37
311 142 0.60
312 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (311 bp):
AGGCATAATGTGCAAGCCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTACCAATCTCGCTGTCCA
GTCCTGCTACCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAG
CCAAACCACGAAACGAGCATGCGGGCACTCAGCCGCCGGAGAGGCAGAATGCGCAAGCAGGAGAT
CGACCTGATCCTCCCTGCGTGCTACCGATCCTGCTACCACAACCCTCGATCCAGTCTGATCTTAG
ACTAGGAATGAACTCCGTATGAGTGCTACCGATCGAAAAGGCCGGTCAGAG
Found at i:26235430 original size:159 final size:157
Alignment explanation
Indices: 26235267--26235610 Score: 332
Period size: 159 Copynumber: 2.2 Consensus size: 157
26235257 TTGATCAAAT
** * *
26235267 CTTAGACTGGGAATGAACTCTGTATGCATAAGTTAACCCATGAAACGAGCGTACGAGCGTTGAGC
1 CTTAGACTGGGAATGAACTC-GTATGCATAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAGC
* *** * * *
26235332 CGGTTGGTGAGGCATAATGAGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTACTGCAGTTCC
65 CAGCCAGAGAGGCAGAATGAGCAAGTCGGGGATCGGCCCGATCCCCC-CTGCGTACTGCAGATCC
* * *
26235397 TGCTGCCATAACCCTTAGTCT-GACTGGGG
129 TGCTGCCATAACCCTCAGTCTAG-CTCGAG
* * * * * * * *
26235426 CTTAGACAT-GGAATGAGCATCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAG
1 CTTAGAC-TGGGAATGAAC-TCGTATGCATAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAG
* * * * *
26235490 CCAGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCT
64 CCAGCCAGAGAGGCAGAATGAGCAAGTCGGGGATCGGCCCGATCCCCCCTGCGTACTGCAGATCC
* * * * *
26235555 TGCTGTCGTAACCCTCGGTCTAGTTCGAT
129 TGCTGCCATAACCCTCAGTCTAGCTCGAG
26235584 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACT-CGTATGC
26235611 TTAGACTGGG
Statistics
Matches: 146, Mismatches: 34, Indels: 11
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 53 0.36
159 88 0.60
160 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCGTATGCATAAGCCAACCCATGAAACGAGCGTACGAGCGCTCAGCC
AGCCAGAGAGGCAGAATGAGCAAGTCGGGGATCGGCCCGATCCCCCCTGCGTACTGCAGATCCTG
CTGCCATAACCCTCAGTCTAGCTCGAG
Found at i:26235620 original size:26 final size:26
Alignment explanation
Indices: 26235584--26235636 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26235574 CTAGTTCGAT
26235584 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26235610 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26235636 C
1 C
26235637 CTAAGTCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26235992 original size:355 final size:355
Alignment explanation
Indices: 26235330--26236262 Score: 969
Period size: 355 Copynumber: 2.6 Consensus size: 355
26235320 CGAGCGTTGA
* * * * * * * * * *
26235330 GCCGGTTGGTGAGGCATAATGAGCAAGTCGGGGATCGGCCC-GATCCCCCTCTGCGTACTGCAGT
1 GCCGGTCGGAGAGGCATAATGAGCAAGCCGAGGATCAGCCCAG-TCCCCCTTTGCGTGCTACCGA
* * *
26235394 TCCTGCTGCCATAACCCTTAGTCTGACTGGGGCTTAGACATGGAATG-AGCATCC-TATGCCTAA
65 TCCTGCTGCCATAACCCTTGGTCCGACTGGGGCTTAGAGATGGAATGTA-C-TCCGTATGCCTAA
* * * * * * * **
26235457 GCCAACCCATGAAATGGGCGTGCGGGTGCTCAGCCAGCCAGAGAGGCAGAATGCGCAAGTCGGGG
128 GCCAACCCACG-AACGAGCGTGCGGGCGCTCAGCAAGCCAGAAAGGCAGAATGCGCAAGCCGAAG
* ** * * * * * *
26235522 ATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCTTGCTGTCGTAACCCTCGGTCTAGTTCGATCTT
192 ATCAGCCCGGTCCCCCCTGAATGCTACCGATCCTGCGGCCGTAACCCTCGATCTAGTCCGATCTT
** * * *
26235587 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCTACCCATG
257 AGACTAAGAATCAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG
* * *
26235652 AAACGAGCGTATGAACGCTCAGCCGATCGGAGAG
322 AAACGAGCGTATGAACGCTCAACCGACCAGAGAG
* *
26235686 GCCGG-CTTGAGAGGCATAATGTGCAAGCCGAGGATCAGCCCAGTCCCCCTTTGCGTGCTACCGA
1 GCCGGTC-GGAGAGGCATAATGAGCAAGCCGAGGATCAGCCCAGTCCCCCTTTGCGTGCTACCGA
*
26235750 TCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGAGATGGAATGTACTCCGTATGCCTAAGC
65 TCCTGCTGCCATAACCCTTGGTCCGACTGGGGCTTAGAGATGGAATGTACTCCGTATGCCTAAGC
* * * *
26235815 CAACCCACGAACGAGTGTGTGGGCGCTCAGCAAGCCGGAAAGGTAGAATGCGCAAGCCGAAGATC
130 CAACCCACGAACGAGCGTGCGGGCGCTCAGCAAGCCAGAAAGGCAGAATGCGCAAGCCGAAGATC
* * * *
26235880 AGCCCGGTCTCCCTTGAATGCTATCGATCCTGGGGCCGTAACCCTCGATCT-GATCCGATCTTAG
195 AGCCCGGTCCCCCCTGAATGCTACCGATCCTGCGGCCGTAACCCTCGATCTAG-TCCGATCTTAG
* *
26235944 ACTAAGAATCAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACGCACGAA
259 ACTAAGAATCAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
** *
26236009 ACGAGCGTATGGGCGCTCAACCGGCCAGAGAG
324 ACGAGCGTATGAACGCTCAACCGACCAGAGAG
* * *
26236041 GTCGGTCGGAAAGGCATAATGCGCAAGCCGAGGATCAGCCCAGTCCCCCTCTACGTGCTGTCGAT
1 GCCGGTCGGAGAGGCATAATGAGCAAGCCGAGGATCAGCCCAGTCCCCCT-T---TGC-GT-G--
* * *
26236106 CCCACTACCGGTCCTGCTGCCACAACCCTTGGTCCGACTGGGGTTTAGATG-TGGAATGTACTCC
58 ----CTACCGATCCTGCTGCCATAACCCTTGGTCCGACTGGGGCTTAGA-GATGGAATGTACTCC
* * ** * ** * * *
26236170 GTATGCCTAAGCCAACCCACGAAACGAACATGCGGGCATTCAACCGGCCGGAGAGGCAGAATGCT
118 GTATGCCTAAGCCAACCCACG-AACGAGCGTGCGGGCGCTCAGCAAGCCAGAAAGGCAGAATGCG
* ** *
26236235 CAAGTCGGGGATCAGCCCGATCCCCCCT
182 CAAGCCGAAGATCAGCCCGGTCCCCCCT
26236263 ACGTGCTGTC
Statistics
Matches: 476, Mismatches: 81, Indels: 28
0.81 0.14 0.05
Matches are distributed among these distances:
354 1 0.00
355 224 0.47
356 114 0.24
357 2 0.00
359 3 0.01
360 2 0.00
361 1 0.00
367 75 0.16
368 54 0.11
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (355 bp):
GCCGGTCGGAGAGGCATAATGAGCAAGCCGAGGATCAGCCCAGTCCCCCTTTGCGTGCTACCGAT
CCTGCTGCCATAACCCTTGGTCCGACTGGGGCTTAGAGATGGAATGTACTCCGTATGCCTAAGCC
AACCCACGAACGAGCGTGCGGGCGCTCAGCAAGCCAGAAAGGCAGAATGCGCAAGCCGAAGATCA
GCCCGGTCCCCCCTGAATGCTACCGATCCTGCGGCCGTAACCCTCGATCTAGTCCGATCTTAGAC
TAAGAATCAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTATGAACGCTCAACCGACCAGAGAG
Found at i:26237202 original size:26 final size:26
Alignment explanation
Indices: 26237173--26237228 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
26237163 CCGGTCTAAT
26237173 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
* *
26237199 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTACG
26237225 CTTA
1 CTTA
26237229 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:26237801 original size:26 final size:26
Alignment explanation
Indices: 26237772--26237824 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26237762 CTGGTCCGAT
26237772 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
26237798 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26237824 C
1 C
26237825 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26238154 original size:26 final size:26
Alignment explanation
Indices: 26238118--26238170 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26238108 CCAGTCCAAT
*
26238118 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26238144 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26238170 C
1 C
26238171 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26238250 original size:346 final size:352
Alignment explanation
Indices: 26237611--26238578 Score: 1188
Period size: 346 Copynumber: 2.7 Consensus size: 352
26237601 CGGTTCGGTT
* * * *
26237611 GGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGC
1 GGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGC
* * *
26237675 TCAGCC-GTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCCTACGTGCTGTCG
65 TCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCG
** * * * * *
26237739 ATCCTATTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
130 ATCCTGCTGTTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA
* * * *
26237804 TTGGGGATGAACTCCGTATGCCTAAGTCAATCCACGAAATGAGCGTGCGGGGGCTCAGCCAGTCA
195 CTGGGGATGAACTCCGTATGCCTAAGTCAA-CCATGAAATGAGCGTGCGGGCGCTCAGCCGGTCA
* *
26237869 GAGAGGTCAGCTGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCC-GATCCCCCTCTGCATGCT
259 GAAAGGTCAGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCAG-TCCCCCTCTGCATGCT
26237933 GCCGAT-C-C-C-G-CTG-TCGGTCCGACG
323 GCCGATCCGCACGGCCTGCTCGGTCCGACG
* * * * *
26237957 GGGGCTTAGACGTGGAACGTACTCCGTATGCCTAAGCCAACCCACGTAACGAGAATGCGGGCACT
1 GGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCT
* * * * * *
26238022 CATCCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGAT-CACCCTGCGTGCTGCCGA
66 CAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCGA
* *
26238086 TCCTGCTGTTGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
131 TCCTGCTGTTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
* * * *
26238151 TGGGGATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGCACTAAGCCGGTCGG
196 TGGGGATGAACTCCGTATGCCTAAGTCAACC-ATGAAATGAGCGTGCGGGCGCTCAGCCGGTCAG
* *
26238216 AAAGG-CTGGCCGGAGAGGCATAATGCGTAAGTCGGGGATCAGCCCAGTCCCCCTCTGCATGCTG
260 AAAGGTC-AGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCAGTCCCCCTCTGCATGCTG
* *
26238280 CTGATCCCGCTACTGGTCCTGCTACCACAACCCTCGGTCCGACT
324 CCGAT-CCGC-AC-GG-CCTG-----------CTCGGTCCGACG
* * *
26238324 GGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCT
1 GGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCT
* * * *
26238389 CAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTTGATCCCCCCTACGTGTTGTCGA
66 CAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCGA
* *
26238454 TCCTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAAC-TCTATATGCTTAGA
131 TCCTGCTGTTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGA
26238518 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGC-TAGCGGGCGCTCAGCCG
195 CTGGGGATGAACTCCGTATGCCTAAGTCAA-CCATGAAATGAGCGT-GCGGGCGCTCAGCCG
26238579 ACCAGAGAGG
Statistics
Matches: 526, Mismatches: 66, Indels: 38
0.83 0.10 0.06
Matches are distributed among these distances:
345 3 0.01
346 243 0.46
347 37 0.07
348 1 0.00
349 1 0.00
351 1 0.00
353 1 0.00
355 3 0.01
367 110 0.21
368 124 0.24
369 2 0.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (352 bp):
GGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCT
CAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCGA
TCCTGCTGTTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
TGGGGATGAACTCCGTATGCCTAAGTCAACCATGAAATGAGCGTGCGGGCGCTCAGCCGGTCAGA
AAGGTCAGCCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCAGTCCCCCTCTGCATGCTGCC
GATCCGCACGGCCTGCTCGGTCCGACG
Found at i:26238537 original size:26 final size:26
Alignment explanation
Indices: 26238486--26238538 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26238476 CCGGTCCGAT
*
26238486 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26238512 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26238538 C
1 C
26238539 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26239587 original size:159 final size:158
Alignment explanation
Indices: 26239232--26239733 Score: 410
Period size: 159 Copynumber: 3.2 Consensus size: 158
26239222 AGCTCCGTAT
* *
26239232 GCTTAGACATGGAATGAACTCCGTGTGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAG
* * *
26239297 CCGGTCGGAGAGACAGAATGCACAAGCCGGGGATCGACCTGATCCCCCCTACGTGCTGTCAATCT
66 CCGGTCGAAAAGACAGAATGCACAAGCCGGGGATCGACCGGATCCCCCCTACGTGCTGTCAATCT
* * * *
26239362 TGCTGCCGCAACCCTCGGTCTGGTTTGA
131 CGCTACCACAACCCTCGGTCTGGTTGGA
* * * * * *
26239390 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCGTTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCA
* * * * * * ** **
26239454 GCCGG-CTGAAAAGGCATAATGCGCAAGCCGGGGATCAGTCCGGTTCCCCTCTTTGTGCTGTCGG
65 GCCGGTC-GAAAAGACAGAATGCACAAGCCGGGGATC-GACCGGATCCCCCCTACGTGCTGTCAA
*
26239518 TGC-CGCTACCACAACCCTCGGT-TCGGTTGGG
128 T-CTCGCTACCACAACCCTCGGTCT-GGTTGGA
* * * ** * *
26239549 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAG
* * * * * * * * * * * *
26239614 TCGATCGGAGAGGCAGAATGCGCAAGTCGGAGATCGGCCCGG-TCCCCCCTGCGTACTGTCGATC
66 CCGGTCGAAAAGACAGAATGCACAAGCCGGGGATC-GACCGGATCCCCCCTACGTGCTGTCAATC
* * *
26239678 -CTGCTGCCGCAACCCTCGGTCCGGTCT-GA
130 TC-GCTACCACAACCCTCGGTCTGGT-TGGA
* *
26239707 -CTTAGA-TTGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
26239734 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 59, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 25 0.09
158 120 0.44
159 125 0.46
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAG
CCGGTCGAAAAGACAGAATGCACAAGCCGGGGATCGACCGGATCCCCCCTACGTGCTGTCAATCT
CGCTACCACAACCCTCGGTCTGGTTGGA
Found at i:26239743 original size:26 final size:26
Alignment explanation
Indices: 26239707--26239759 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26239697 TCCGGTCTGA
*
26239707 CTTAGATTGGGAATGAACTT-CGTATG
1 CTTAGACTGGGAATGAA-TTCCGTATG
*
26239733 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAATTCCGTATG
26239759 C
1 C
26239760 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATTCCGTATG
Found at i:26240034 original size:354 final size:343
Alignment explanation
Indices: 26239391--26240144 Score: 858
Period size: 354 Copynumber: 2.2 Consensus size: 343
26239381 CTGGTTTGAT
* * * *
26239391 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCGTTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGGTCAGC
** * * * * *
26239456 CGGCTGAAAAGGCATAATGCGCAAGCCGGGGATCAGTCCGGTTCCCCTCTTTGTGCTGTCGGTGC
66 CACCCGAAAAGGCATAATGCGCAAGCCGGGGATCAGTCCAGTCCCCCTCTTTGTGCCGTCGCTGC
* *
26239521 CGCTACCACAACCCTCGGTTCGGTTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAA
131 CGCTACCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAGCTACCTATGCCTAAGCCAA
* ** * *
26239586 CCCACGAAACGGGCGTGTGGGCGCTCAATCGATCGGAGAGGCAGAATGCGCAAGTCGGAGATCGG
196 CCCACGAAACGAGCGTACGGGCGCTCAATCGACCGGAGAGGCAGAATGCGCAAGCCGGAGATCGG
* * * * * *
26239651 CCCGGTCCCCCCTGCGTACTGTCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGA-CTTAGATT
261 CCCGATCCCCCCTACGTACTGTCGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACT
* *
26239715 GGGAATGAACT-TCGTATG
326 GGGAATGAAATCT-ATATG
* *
26239733 CTTAGACTGGGGATGAATTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGGTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGGTCAGC
* * *
26239798 CACCCGGAGAGGCATAATGCGTAAGCCGGGGATCAG-CCTAGTCCCCCTCTGCTTGCTGCCGATC
66 CACCCGAAAAGGCATAATGCGCAAGCCGGGGATCAGTCC-AGTCCCCCTCT--TTG-TGCCG-T-
** *
26239862 CCGCTGCCGGTCCTACATCCACAACCCTCGG-TCTGGCTGGGGCTTAGATGTGGAATGTA-CTAT
125 -CGCTGCC-G--CT--A-CCACAACCCTCGGTTC-GGCTGGGGCTTAGACATGGAATG-AGCTAC
* * * * * *
26239925 GTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCT-TAGCTGGCCGGAGAGGCAGAATGC
181 CTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAATC-GACCGGAGAGGCAGAATGC
* * * *
26239989 GCAAGCC-GAGGATCGGCTCGATCCCCCCTACGTGCTG-CTGATCCTGCTACTGCAACCCTTGAT
245 GCAAGCCGGA-GATCGGCCCGATCCCCCCTACGTACTGTC-GATCCTGCTACCGCAACCCTCGAT
*
26240052 CTGATCTGATCTTAGACTGGGAATGAAATCTATATG
308 CCGATCTGATCTTAGACTGGGAATGAAATCTATATG
* *
26240088 CTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCATGCGGG
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGG
26240145 TGCTCAACCG
Statistics
Matches: 343, Mismatches: 49, Indels: 27
0.82 0.12 0.06
Matches are distributed among these distances:
341 2 0.01
342 98 0.29
344 3 0.01
345 4 0.01
346 1 0.00
348 6 0.02
349 1 0.00
351 2 0.01
353 8 0.02
354 142 0.41
355 75 0.22
356 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGGTCAGC
CACCCGAAAAGGCATAATGCGCAAGCCGGGGATCAGTCCAGTCCCCCTCTTTGTGCCGTCGCTGC
CGCTACCACAACCCTCGGTTCGGCTGGGGCTTAGACATGGAATGAGCTACCTATGCCTAAGCCAA
CCCACGAAACGAGCGTACGGGCGCTCAATCGACCGGAGAGGCAGAATGCGCAAGCCGGAGATCGG
CCCGATCCCCCCTACGTACTGTCGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACT
GGGAATGAAATCTATATG
Found at i:26240091 original size:26 final size:26
Alignment explanation
Indices: 26240062--26240114 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26240052 CTGATCTGAT
*
26240062 CTTAGACTGGGAATGAAATCTATATG
1 CTTAGACTGGGAATGAAATCCATATG
* *
26240088 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
26240114 C
1 C
26240115 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:26241316 original size:26 final size:26
Alignment explanation
Indices: 26241280--26241332 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26241270 CTGATCCGAT
26241280 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
26241306 CTTAGGCTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
26241332 C
1 C
26241333 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:26241652 original size:26 final size:26
Alignment explanation
Indices: 26241623--26241675 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26241613 CCGATCCGAT
26241623 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
26241649 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
26241675 C
1 C
26241676 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:26241702 original size:343 final size:342
Alignment explanation
Indices: 26240964--26241726 Score: 1021
Period size: 343 Copynumber: 2.2 Consensus size: 342
26240954 CTGATCCGAT
* * ** * * * * * *
26240964 CTTAGACTGGGAATGAGCTTCGTATGAATAAGTTAACCCACGAAACGAGTGCACAGGCGTTGAGC
1 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTAAGC
*
26241029 CGATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTGCCAGTCC
66 CGATCGAAGAGGCATAATACGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTGCCAGTCC
*
26241094 CGCTGCCACAACCCTCTGTCCAGCTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAA
131 CGCTGCCACAACCCTCTGTCCAGCTAGGGCTTAGACATGAAATGAGCTCCCTATGCCTAAGCCAA
* * * ** * *
26241159 CCCACAAACGGGCATACGGGCGCTCAGCAGATTGAAGAGGCAGAATGCGCAAGCTGGGGATCAGT
196 CCCACAAACAGGCATACGAGCACTCAGCAGACGGAAGAGGCAGAATGCGCAAGCTAGGGATCAGC
* * * ** * *
26241224 CTGGTCCCCCCTGCTTGCTGTCGATCCTACTGTCGCAAACCTCGGTCTGATCCGATCTTAGACTG
261 CCGGTCCCCCCTACGTGCTACCGATCCTACTGTCGCAAACCTCGATCCGATCCGATCTTAGACTG
*
26241289 GGAATGAACTTCGTATG
326 GGAATGAACTCCGTATG
* * * *
26241306 CTTAGGCTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGTGCTAAGT
1 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTAAGC
* * * * *
26241371 CGGTCGAAGAGGCATAATACGTAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGCCAGTCC
66 CGATCGAAGAGGCATAATACGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTGCCAGTCC
*
26241436 CGCTGCCACAACCCTC-GATCCAGCTGGGGCTTAGACATGAAATGAGCTCCCTATGCCTAAGCCA
131 CGCTGCCACAACCCTCTG-TCCAGCTAGGGCTTAGACATGAAATGAGCTCCCTATGCCTAAGCCA
* * * *
26241500 ACCCACAAAACAGGCATGCGAGCACTCAGTAGGCCGGAA-AGGTAGAATGCGCAAG-TCAGGGAT
195 ACCCAC-AAACAGGCATACGAGCACTCAGCA-GACGGAAGAGGCAGAATGCGCAAGCT-AGGGAT
*
26241563 C-GACCCGGTCCCCCTTACGTGCTACCGATCCTACTGTCGCAAACCTCGATCCGATCCGATCTTA
257 CAG-CCCGGTCCCCCCTACGTGCTACCGATCCTACTGTCGCAAACCTCGATCCGATCCGATCTTA
*
26241627 GATTGGGAATGAACTCCGTATG
321 GACTGGGAATGAACTCCGTATG
* * * *
26241649 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAGCGCTCAGC
1 CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTAAGC
*
26241714 CGATCGGAGAGGC
66 CGATCGAAGAGGC
26241727 TGGCCGGAGA
Statistics
Matches: 363, Mismatches: 53, Indels: 9
0.85 0.12 0.02
Matches are distributed among these distances:
341 1 0.00
342 178 0.49
343 180 0.50
344 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (342 bp):
CTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTAAGC
CGATCGAAGAGGCATAATACGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCATGCTGCCAGTCC
CGCTGCCACAACCCTCTGTCCAGCTAGGGCTTAGACATGAAATGAGCTCCCTATGCCTAAGCCAA
CCCACAAACAGGCATACGAGCACTCAGCAGACGGAAGAGGCAGAATGCGCAAGCTAGGGATCAGC
CCGGTCCCCCCTACGTGCTACCGATCCTACTGTCGCAAACCTCGATCCGATCCGATCTTAGACTG
GGAATGAACTCCGTATG
Found at i:26241736 original size:13 final size:13
Alignment explanation
Indices: 26241718--26241752 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
26241708 CTCAGCCGAT
26241718 CGGAGAGGCTGGC
1 CGGAGAGGCTGGC
26241731 CGGAGAGGCTGGC
1 CGGAGAGGCTGGC
26241744 CGGAGAGGC
1 CGGAGAGGC
26241753 AATACGTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.17, C:0.23, G:0.54, T:0.06
Consensus pattern (13 bp):
CGGAGAGGCTGGC
Found at i:26242031 original size:26 final size:26
Alignment explanation
Indices: 26242002--26242053 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26241992 CTGGTCTGAT
*
26242002 CTTAAACT-GGGAATGAACTCTGTATG
1 CTTAAACTAGGG-ATGAACTCCGTATG
*
26242028 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAAACTAGGGATGAACTCCGTATG
26242054 ACTAATTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAAACTAGGGATGAACTCCGTATG
Found at i:26242399 original size:26 final size:26
Alignment explanation
Indices: 26242358--26242410 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26242348 TCAATTCAAT
26242358 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26242384 CTTAGACTAGGG-ATGAACTGCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
26242410 C
1 C
26242411 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26242474 original size:356 final size:356
Alignment explanation
Indices: 26241027--26244542 Score: 1545
Period size: 356 Copynumber: 10.0 Consensus size: 356
26241017 CAGGCGTTGA
*
26241027 GCCGATC-GAAGAGGCATAATGCGCAAG-CCGAGGATC-GACCCGGTCCCCCTCTGCATGCTGCC
1 GCCGATCAG-AGAGGCATAATGCGTAAGTCCGAGGATCAG-CCCGGTCCCCCTCTGCATGCTGCC
* *
26241089 -AGTCCCGCTGCCACAACCC-TCTG-TCCAGCTAGGGCTTAGACATGGAATG-AGCTCCCTATGC
64 GA-TCCCGCTGCCACAACCCTTC-GATCGA-CTGGGGCTTAGACATGGAATGTA-CTCCCTATGC
* * * * ** * *
26241150 CTAAGCCAACCCAC-AAACGGGCATACGGGCGCTCAGCAGATTGAAGAGGCAGAATGCGCAAGCT
125 CTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACAGGAGAAGCAGAATGCGCAAGCT
* * * * * * *
26241214 GGGGATC-AGTCTGGTCCCCCCTGCTTGCTGTCGATCCTACTGTCGCAAACCTCG-GTCTGATCC
190 GAGGATCGA-CCCGGT-CCCCCTGCGTGCTGCCGATCCTACTATCGCAAACCTCGATTC-GATCC
* * *
26241277 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGGCTGGGGATGAACTTCGTATGCCTAAGTCAA
252 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * *
26241342 CCCACGAAACAAGCGTACGGGTGCT-AA--G-TC-G-GT-
317 CCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGTG
* * * *
26241375 --CG---A-AGAGGCATAATACGTAAG-CCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGCC-A
1 GCCGATCAGAGAGGCATAATGCGTAAGTCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTGCCGA
* *
26241432 GTCCCGCTGCCACAACCC-TCGATCCAGCTGGGGCTTAGACATGAAATG-AGCTCCCTATGCCTA
66 -TCCCGCTGCCACAACCCTTCGATCGA-CTGGGGCTTAGACATGGAATGTA-CTCCCTATGCCTA
* * * * ** * * * *
26241495 AGCCAACCCACAAAAC-AGGCATGCGAGCACTCAGTAGGCCGGA-AAGGTAGAATGCGCAAG-TC
128 AGCCAACCCACGAAACGA-GCGTGCGGGCGCTCAGCCGACAGGAGAA-GCAGAATGCGCAAGCTG
* * * *
26241557 AGGGATCGACCCGGTCCCCCTTACGTGCTACCGATCCTACTGTCGCAAACCTCGATCCGATCCGA
191 A-GGATCGACCCGGTCCCCC-TGCGTGCTGCCGATCCTACTATCGCAAACCTCGATTCGATCCGA
* *
26241622 TCTTAGATTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACC
254 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
* * *
26241687 CACGAAACGAGCGTACGAGCGCTCAGCCGATCGGAGAGGCTG
319 CACGAAACGAGCGTGCGGGCGCTCAACCGATC-G-GA-G-TG
* * *
26241729 GCCGGAGAGGCTGGCCGGAGAGGC--AATACGTAAGT-CGAGGATCAGCCCGATCCCCCTCTGCA
1 GCC---GA---T---CAGAGAGGCATAATGCGTAAGTCCGAGGATCAGCCCGGT-CCCC-CT-C-
* * * * *
26241791 TGGTACCGATCTCGCTGCCGGTCCTGCTGCCACAA-CCTTCGATCCGATTGGGGCTTAAACGTGG
53 T-G---C-A--T-GCTGCCGATCCCGCTGCCACAACCCTTCGAT-CGACTGGGGCTTAGACATGG
* ** * *
26241855 AATGTTCTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGATC-GGAG-
109 AATGTACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CAGGAGA
* * * *
26241918 AGTCAGAATGCGCAAGCCG-GTGATCGGCTCGGTACCCCCTGCGTGCTGTCGATCCTACTA-C-C
173 AG-CAGAATGCGCAAGCTGAG-GATCGACCCGGT-CCCCCTGCGTGCTGCCGATCCTACTATCGC
* * * * * *
26241980 ATAACCCTTGA-TCTGGTCTGATCTTAAACTGGGAATGAACTCTGTATGCTTAGACTAGGGATGA
235 A-AA-CCTCGATTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGA
* * * ** * * *
26242044 ACTCCGTATGACTAATTCAACCCACGAAATGAGCGTGCAAGCGCTCAGCCGACCGGAGAG
297 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGTG
* * * * * * * *
26242104 GCCGAACGGAGAGGCATAATGCGCAAGTCAG-GGATCAACCTGGTCCTCCTCTACATGCTGCCGA
1 GCCGATCAGAGAGGCATAATGCGTAAGTCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTGCCGA
* * * *
26242168 TCTCGCTGCCACAACCCTTGGTTCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGC
66 TCCCGCTGCCACAACCCTTCGATCGACTGGGGCTTAGACATGGAATGTACTCCCTATGCCTAAGC
* * *
26242233 CAACCCACGAAACGAGCGTGCGGGCGCTCACCCGACAAGAGAAGCAGAATGTGCAAGCTGAGGAT
131 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACAGGAGAAGCAGAATGCGCAAGCTGAGGAT
** * * * * * * * *
26242298 CGACCCCATCCCCTCTACGTGCTACCAATCCTGCTATCGCAACCCTCGATTCAATTCAATCTTAG
196 CGACCCGGTCCCC-CTGCGTGCTGCCGATCCTACTATCGCAAACCTCGATTCGATCCGATCTTAG
* * *
26242363 ACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTGCGTATGCCTAAGTCAACCCATGAA
260 ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
* *
26242428 ACGAGCATGCGGGCGCTCAACCGGTCGGAGTG
325 ACGAGCGTGCGGGCGCTCAACCGATCGGAGTG
* * * * * *
26242460 GTCGATCAGAGAGGCATAATGTGTAAGT-TGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCGA
1 GCCGATCAGAGAGGCATAATGCGTAAGTCCGAGGATCAGCCCGGTCCCCCTCTGCATGC--T-G-
* * **
26242524 CCCCGTTGCTGGTCCTGCTACCACAACCC-TCGATCTGACTGGGGCTTAGATGTGGAATGTACTC
62 --CCGAT-C----CC-GCTGCCACAACCCTTCGATC-GACTGGGGCTTAGACATGGAATGTACTC
* * * * * * ** * *
26242588 CGTATGCCTAAGCCAACTCACGAATCGAGCGTGCAGACGTTCAGCCGATTGGAGAGGTAGAATGC
118 CCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACAGGAGAAGCAGAATGC
* * * * ** * ** * * * *
26242653 GTAAGCCGGGGATC-AGCTCAATCCCCATTGCGTTTTGCTGATCCTACT-GCTG-TAACCTCAAT
183 GCAAGCTGAGGATCGA-CCCGGTCCCC-CTGCGTGCTGCCGATCCTACTATC-GCAAACCTCGAT
* * *
26242715 CCGATCCGATCTTATG-CTGGCAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCC
245 TCGATCCGATCTTA-GACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
* * *
26242779 TAAGTCAACCCATGAAAAGAGCGTGCGGGTGCTCAA-C---C-GA-T-
309 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGTG
* * * * * * ** **
26242820 --CG----GAGAGGCAT-ATGCGCAAGT-TGGGGATCAGCTCGATCCCTCTCTGTGTGCTATCGA
1 GCCGATCAGAGAGGCATAATGCGTAAGTCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTGCCGA
* ** * *
26242877 TCCCGCTGCCACAACCC-TC-AGTCCAGCTGGGGCTTAGATGTGGAATTTACTCCTTATGCCTAA
66 TCCCGCTGCCACAACCCTTCGA-TCGA-CTGGGGCTTAGACATGGAATGTACTCCCTATGCCTAA
** * * * * * *
26242940 GCCAACCCACGAAACGAGCACGCGGGCACTAAGCTGATC-GGAGAGGCAGAATGCGTAAG-TCAA
129 GCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CAGGAGAAGCAGAATGCGCAAGCT-GA
* *
26243003 GGATC-AGCCCGGTCCCCCTTACGTGCTGTCGA---T-C---CG--------G--TC--T--GAT
192 GGATCGA-CCCGGTCCCCC-TGCGTGCTGCCGATCCTACTATCGCAAACCTCGATTCGATCCGAT
* ** * *
26243046 CTTAGACTGGGGATGAACTCTATATGCTTGGACTGGGGATGAACTCTGTATGCCTAAGTCAACCC
255 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
26243111 ACAAAACGAGCGTGCAGGCACTCAACCGACCAGAGTG
320 ACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGTG
* * *** * * *** * * *
26243148 GCAGGATGC-GTA-AGTCGGGGAT-CG-AA---CGGGTGGT-AGGTGGGTTCAAGCACATCTTCA
1 GC-CGAT-CAG-AGAGGC-ATAATGCGTAAGTCCGAG-GATCAGCCCGG-TC---CCCCTCTGCA
* ** * * * * *
26243205 --CATGCCTAAGTCCTACTGCCATAACCC-TCGTTCGGCTAGGGCTTAGACGTGGAATGTACTCC
57 TGC-TGCC-GA-TCCCGCTGCCACAACCCTTCGATCGACTGGGGCTTAGACATGGAATGTACTCC
* * * * * * * * * *
26243267 GTATGCCTAAACCAACCTATGAAATGAACGTG-GGGCGCTCAGTCGGCCA-GAGAGGCTGAATGC
119 CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCGACAGGAGAAGCAGAATGC
* * * * ** * * * *
26243330 GCAAGCCGGGGGTCGGCTTGGTCCCCCTGCGTGTTGCCGAT-CTACT-GCTGCAACCCTCGATCC
183 GCAAGCTGAGGATCGACCCGGTCCCCCTGCGTGCTGCCGATCCTACTATC-GCAAACCTCGATTC
* * * * *
26243393 GGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGACTAA
247 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
* * * *
26243458 GTCAACCCATGAAAAGAGCGTACGGGCGCTC-A--G--C-CAGT-
312 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGTG
* * * * * *
26243496 --CG----GAAAGGCATAATGCGCAAG-CTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGA
1 GCCGATCAGAGAGGCATAATGCGTAAGTCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTGCCGA
* * *
26243554 TCCCGCTGCCGGTCTCACTGCCACAACCCTTGGTTC-AGCTGGGGCTTAGACGTGGAATGTACTC
66 T----C--CC-G-----CTGCCACAACCCTTCGATCGA-CTGGGGCTTAGACATGGAATGTACTC
* * * * * * * * * *
26243618 CGTAAGTCTAAGCCAACCAATGAAACGAGCATGCGGGCGCTAAGCCGACCGGAGAGGCAGAATGT
118 CCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACAGGAGAAGCAGAATGC
* * * * *
26243683 GCAAGCCGAGGATCGGCCCGATCCCCCTTACGTGCT----A---T-CGATC-C--A----G--T-
183 GCAAGCTGAGGATCGACCCGGTCCCCC-TGCGTGCTGCCGATCCTACTATCGCAAACCTCGATTC
* * *
26243730 --T-CGATCTTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGGATGAACTTCGTATGCCTCA
247 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
* * * * * *
26243792 GTCAACCCACGAAACGAGCGTACAGGCGTTCAACCGACCAGAGAG
312 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGTG
* * * * * ** * * * *
26243837 GCAGGATGC-GCAAGTCAGGGATCAAACGGGT-GGTAGGTGGGTTCAAGCAC-AT----CT-T-C
1 GC-CGAT-CAG--AG--AGGCAT--AATGCGTAAGTCCG-AGGATC-AGCCCGGTCCCCCTCTGC
* * * * * * * *
26243893 AT-ATGCCTAAGTCCTGCTGCCATAACCC-TCGGTCCAACTAGGGCTTAGACGTGGAATGTACTC
56 ATGCTGCC-GA-TCCCGCTGCCACAACCCTTCGAT-CGACTGGGGCTTAGACATGGAATGTACTC
** ** * * * *
26243956 TGTATGCCTAAGCCAACCCACGAAACGAGCGTG-GGGCATTCAGCCAGCCA-AAGAGGCAGAATA
118 CCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GACAGGAGAAGCAGAATG
* * * * * * *
26244019 CGTAAG-TCGAGGATCGACTCGGTCCCCCCTACGTGCTGTCGATCCTGCT-GCTGCAACCCTCGA
182 CGCAAGCT-GAGGATCGACCCGGT-CCCCCTGCGTGCTGCCGATCCTACTATC-GCAAACCTCGA
* * * *
26244082 TCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACCGGGGATGAACTCCGTATGCC
244 TTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
* * *
26244147 TAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGATCAGAGAG
309 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGGAGTG
* * ** * * * * * * *
26244195 GCCGGTCGGAGAGGCATAATATGCAAGT-CGGGGATTAGCCCGGTTCCCCTCTACGTGCTGTCGA
1 GCCGATCAGAGAGGCATAATGCGTAAGTCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTGCCGA
* * * **
26244259 TCCTGCTGCCAGTCCTACTACCACAACCATC-AGTCCGGCTGGGGCTTAGATGTGGAATGTACTC
66 TCC--C-G-CTG-CC-AC-A--AC--CCTTCGA-T-CGACTGGGGCTTAGACATGGAATGTACTC
* * ** * * * * * * *
26244323 CGTACGCCTAAGCCAACCCATAAAATGAGCGTACAGGCGCTCAGTCGACCGGAGAGGTAGAATGC
118 CCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACAGGAGAAGCAGAATGC
* * * * * * *
26244388 ACAAGCTGGGGATCGACTCGGTTCCCCTTGCATGCTGCC-A---TA--A---C---CCTTGATCC
183 GCAAGCTGAGGATCGACCCGG-TCCCCCTGCGTGCTGCCGATCCTACTATCGCAAACCTCGATTC
* * *
26244441 GATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCCAA
247 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
* *
26244506 GTCAACCCACGAAACAAGTGTGCGGGCGCTCAACCGA
312 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGA
26244543 CCAGAGAGGC
Statistics
Matches: 2431, Mismatches: 484, Indels: 498
0.71 0.14 0.15
Matches are distributed among these distances:
320 1 0.00
321 78 0.03
322 1 0.00
323 1 0.00
325 2 0.00
326 2 0.00
327 1 0.00
331 1 0.00
333 7 0.00
334 86 0.04
335 20 0.01
336 44 0.02
337 107 0.04
338 91 0.04
339 3 0.00
340 16 0.01
341 132 0.05
342 130 0.05
343 166 0.07
344 13 0.01
345 3 0.00
346 7 0.00
347 6 0.00
348 7 0.00
349 11 0.00
350 11 0.00
351 19 0.01
352 69 0.03
353 84 0.03
354 23 0.01
355 98 0.04
356 381 0.16
357 21 0.01
358 103 0.04
359 6 0.00
360 3 0.00
361 2 0.00
362 7 0.00
363 2 0.00
364 4 0.00
365 1 0.00
366 14 0.01
367 187 0.08
368 195 0.08
369 11 0.00
370 1 0.00
371 1 0.00
372 3 0.00
375 5 0.00
376 1 0.00
377 4 0.00
378 10 0.00
379 220 0.09
380 9 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (356 bp):
GCCGATCAGAGAGGCATAATGCGTAAGTCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTGCCGA
TCCCGCTGCCACAACCCTTCGATCGACTGGGGCTTAGACATGGAATGTACTCCCTATGCCTAAGC
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACAGGAGAAGCAGAATGCGCAAGCTGAGGAT
CGACCCGGTCCCCCTGCGTGCTGCCGATCCTACTATCGCAAACCTCGATTCGATCCGATCTTAGA
CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTCAACCGATCGGAGTG
Found at i:26243430 original size:26 final size:26
Alignment explanation
Indices: 26243401--26243452 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26243391 CCGGTCTGAT
*
26243401 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
26243427 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26243453 ACTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26243710 original size:689 final size:685
Alignment explanation
Indices: 26242565--26244606 Score: 2297
Period size: 689 Copynumber: 2.9 Consensus size: 685
26242555 GATCTGACTG
* * * * * **
26242565 GGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACTCACGAATCGAGCGTGCAG-ACGTT
1 GGGCTTAGACGTGGAATGTACTCCGTATGCCTAAACCAACCCACGAAACGAACGTGGGGCAC--T
**** * * * * ** ** * *
26242629 CAGCC-GATTGGAGAGGTAGAATGCGTAAGCCGGGGATC-AGCTCAATCCCCATTGCGTTTTGCT
64 CAGCCAG-CCAAAGAGGCAGAATACGCAAGCCGAGGATCGA-CTCGGTCCCCCCTGCGTGTTGCC
* * * *
26242692 GATCCTACTGCTGTAA-CCTCAATCCGATCCGATCTTATG-CTGGCAATGAACTCCGTATGCTTA
127 GATCCTACTGCTGCAACCCTCGATCCGATCTGATCTTA-GACTGG-AATGAACTCTGTATGCTTA
* * *
26242755 GACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGTGCTCAACCGAT
190 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCCG-T
* * * *
26242820 CGGAGAGGCAT-ATGCGCAAGTTGGGGATCAGCTCGATCCCTCTCT-GTG-TGCTAT--CGAT--
254 CGGAGAGGCATAATGCGCAAG-TGGGGATCAGCCCGATCCCCCTCTCGTGCTGCGATCCCGCTGC
* * * *
26242878 C--CCGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGATGTGGAATTTACTCCTTATGCCTAAG
318 CGTCCACTGCCACAACCCTCAGTCCAGCTGGGGCTTAGATGTGGAATGTACTCCGTAAGCCTAAG
* * * * * * * *
26242941 CCAACCCACGAAACGAGCACGCGGGCACTAAGCTGATCGGAGAGGCAGAATGCGTAAGTCAAGGA
383 CCAACCCATGAAACGAGCATGCGGGCGCTAAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGA
* * *
26243006 TCAGCCCGGTCCCCCTTACGTGCTGTCGATCCGGTCTGATCTTAGACTGGGGATGAACTCTATAT
448 TCGGCCCGGTCCCCCTTACGTGCTGTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
* *
26243071 GCTTGGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCACTCAA
513 GCTTGGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAA
*
26243136 CCGACCAGAGTGGCAGGATGCGTAAGTCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATC
578 CCGACCAGAGAGGCAGGATGCGTAAGTCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATC
* **
26243201 TTCACATGCCTAAGTCCTACTGCCATAACCCTC-GTTCGGCTA
643 TTCACATGCCTAAGTCCTACTGCCATAACCCTCGGTCCAACTA
* * * *
26243243 GGGCTTAGACGTGGAATGTACTCCGTATGCCTAAACCAACCTATGAAATGAACGTGGGGCGCTCA
1 GGGCTTAGACGTGGAATGTACTCCGTATGCCTAAACCAACCCACGAAACGAACGTGGGGCACTCA
* * * * * * * * *
26243308 GTCGGCCAGAGAGGCTGAATGCGCAAGCCGGGGGTCGGCTTGGT-CCCCCTGCGTGTTGCCGAT-
66 GCCAGCCAAAGAGGCAGAATACGCAAGCCGAGGATCGACTCGGTCCCCCCTGCGTGTTGCCGATC
*
26243371 CTACTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTG
131 CTACTGCTGCAACCCTCGATCCGATCTGATCTTAGACT-GGAATGAACTCTGTATGCTTAGACTG
* * *
26243436 GGGATGAACTCCGTATGACTAAGTCAACCCATGAAAAGAGCGTACGGGCGCTCAGCCAGTCGGAA
195 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCC-GTCGGAG
26243501 AGGCATAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCCCGCTGCCGG
259 AGGCATAATGCGCAAG-TGGGGATCAGCCCGATCCCCCTCT-CGTGCTG-CGATCCCGCTGCC-G
** * * *
26243566 TCTCACTGCCACAACCCTTGGTTCAGCTGGGGCTTAGACGTGGAATGTACTCCGTAAGTCTAAGC
320 TC-CACTGCCACAACCCTCAGTCCAGCTGGGGCTTAGATGTGGAATGTACTCCGTAAGCCTAAGC
* *
26243631 CAACCAATGAAACGAGCATGCGGGCGCTAAGCCGACCGGAGAGGCAGAATGTGCAAGCCGAGGAT
384 CAACCCATGAAACGAGCATGCGGGCGCTAAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGAT
* * * *
26243696 CGGCCCGATCCCCCTTACGTGCTATCGATCCAGT-TCGATCTTAGACTGGGAATGAACTCCGTAT
449 CGGCCCGGTCCCCCTTACGTGCTGTCGATCCGGTCT-GATCTTAGACTGGGAATGAACTCTGTAT
* * *
26243760 GCTTGGACTGGGGATGAACT-TCGTATGCCTCAGTCAACCCACGAAACGAGCGTACAGGCGTTCA
513 GCTTGGACTGGGGATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * *
26243824 ACCGACCAGAGAGGCAGGATGCGCAAGTCAGGGATCAAACGGGTGGTAGGTGGGTTCAAGCACAT
577 ACCGACCAGAGAGGCAGGATGCGTAAGTCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACAT
* *
26243889 CTTCATATGCCTAAGTCCTGCTGCCATAACCCTCGGTCCAACTA
642 CTTCACATGCCTAAGTCCTACTGCCATAACCCTCGGTCCAACTA
* * * *
26243933 GGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGGGGCATTCA
1 GGGCTTAGACGTGGAATGTACTCCGTATGCCTAAACCAACCCACGAAACGAACGTGGGGCACTCA
* * * * *
26243998 GCCAGCCAAAGAGGCAGAATACGTAAGTCGAGGATCGACTCGGTCCCCCCTACGTGCTGTCGATC
66 GCCAGCCAAAGAGGCAGAATACGCAAGCCGAGGATCGACTCGGTCCCCCCTGCGTGTTGCCGATC
* *
26244063 CTGCTGCTGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACCG
131 CTACTGCTGCAACCCTCGATCCGATCTGATCTTAGACT-GGAATGAACTCTGTATGCTTAGACTG
*
26244128 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGATCAGAG
195 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCG------C--TC----
** * * *
26244193 AGGCCGGTCGGAGAGGCATAATATGCAAGTCGGGGATTAGCCCGGTTCCCCTCTACGTGCTGTCG
248 A-GCC-GTCGGAGAGGCATAATGCGCAAGT-GGGGATCAGCCCGATCCCCCTCT-CGTGCTG-CG
* * * *
26244258 ATCCTGCTGCCAGTCCTACTACCACAACCATCAGTCCGGCTGGGGCTTAGATGTGGAATGTACTC
308 ATCCCGCTGCC-GTCC-ACTGCCACAACCCTCAGTCCAGCTGGGGCTTAGATGTGGAATGTACTC
* * * * * * * * *
26244323 CGTACGCCTAAGCCAACCCATAAAATGAGCGTACAGGCGCTCAGTCGACCGGAGAGGTAGAATGC
371 CGTAAGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTAAGCCGACCGGAGAGGCAGAATGC
* * * * * * * * *
26244388 ACAAGCTGGGGATCGACTCGGTTCCCCTTGCATGCTGCCATAACCCTTGATCCGATCTGATCTTA
436 GCAAGCCGAGGATCGGCCCGGTCCCCCTTACGTGCTG---T----C--GATCCGGTCTGATCTTA
* * *
26244453 GACTGGGAATGAACT-TCGTATGCTTAGACTGGGGATGAACTCCGTATGCCCAAGTCAACCCACG
492 GACTGGGAATGAACTCT-GTATGCTTGGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACG
* * * **
26244517 AAACAAGTGTGCGGGCGCTCAACCGACCAGAGAGGCAGGATGCGTAAACCGGGGATCGAACGGGT
556 AAACGAGCGTGCAGGCGCTCAACCGACCAGAGAGGCAGGATGCGTAAGTCGGGGATCGAACGGGT
26244582 GGTAGGTGGGTTCAAGCACATCTTC
621 GGTAGGTGGGTTCAAGCACATCTTC
26244607 CTATTTCTGC
Statistics
Matches: 1143, Mismatches: 169, Indels: 68
0.83 0.12 0.05
Matches are distributed among these distances:
675 12 0.01
676 121 0.11
677 66 0.06
678 50 0.04
679 4 0.00
680 2 0.00
681 3 0.00
683 3 0.00
685 1 0.00
688 3 0.00
689 313 0.27
690 96 0.08
691 16 0.01
692 108 0.09
698 1 0.00
700 2 0.00
704 3 0.00
705 186 0.16
708 1 0.00
712 1 0.00
714 150 0.13
715 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (685 bp):
GGGCTTAGACGTGGAATGTACTCCGTATGCCTAAACCAACCCACGAAACGAACGTGGGGCACTCA
GCCAGCCAAAGAGGCAGAATACGCAAGCCGAGGATCGACTCGGTCCCCCCTGCGTGTTGCCGATC
CTACTGCTGCAACCCTCGATCCGATCTGATCTTAGACTGGAATGAACTCTGTATGCTTAGACTGG
GGATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCGCTCAGCCGTCGGAGAG
GCATAATGCGCAAGTGGGGATCAGCCCGATCCCCCTCTCGTGCTGCGATCCCGCTGCCGTCCACT
GCCACAACCCTCAGTCCAGCTGGGGCTTAGATGTGGAATGTACTCCGTAAGCCTAAGCCAACCCA
TGAAACGAGCATGCGGGCGCTAAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCG
GTCCCCCTTACGTGCTGTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTGGAC
TGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAACCGACCAG
AGAGGCAGGATGCGTAAGTCGGGGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCACATG
CCTAAGTCCTACTGCCATAACCCTCGGTCCAACTA
Found at i:26244122 original size:26 final size:26
Alignment explanation
Indices: 26244093--26244145 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26244083 CCGATCTGAT
* *
26244093 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
*
26244119 CTTAGACCGGGGATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
26244145 C
1 C
26244146 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:26244485 original size:26 final size:26
Alignment explanation
Indices: 26244449--26244501 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26244439 CCGATCTGAT
*
26244449 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26244475 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26244501 C
1 C
26244502 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26245611 original size:158 final size:158
Alignment explanation
Indices: 26245196--26245633 Score: 427
Period size: 158 Copynumber: 2.8 Consensus size: 158
26245186 AGCTCCATAT
* * * * *
26245196 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTACAGGCACTCAG
1 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * * **
26245261 TCGGTCGGACAGGTAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCATGCTGTTGATCC
66 CCGGTCGGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCATGCTGCAGATCC
** * * * *
26245326 TGCTACCAGAACCCTCGGTCCAATTTGA
131 CACTACCACAACCCTCGATCCAACTAGA
* * ** * * * *
26245354 TCTTAGAC-TGGGAATGAGCTCCGTATGCATAAGTTAACCCATGAAACGAGCGTGTGAGCGCTGA
1 GCTTAGACAT-GGAATGAGCTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * *
26245418 GCAGGTC-GAAGAGGCATAATGCGCAAGCCAAGGATCGACCCGATCCCCCTCTGCATGCTGCCAG
65 GCCGGTCGGAA-AGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCC-CTGCATGCTG-CAG
** *
26245482 -TCCCACTACCACAACCCTC-ATCCGGCTAGG
127 ATCCCACTACCACAACCCTCGATCCAACTAGA
* * * * *
26245512 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGCACTCAA
1 GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * ** * *
26245577 CCGATCGGAAAGGCAGAATGCGTAAGCTGGGGATC-AGCCCGGTCCCCCCTGCTTGCT
66 CCGGTCGGAAAGGCAGAATGCGCAAGCCAGGGATCGA-CCCGATCCCCCCTGCATGCT
26245634 ACCATCCTGC
Statistics
Matches: 221, Mismatches: 52, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
157 12 0.05
158 178 0.81
159 30 0.14
160 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGGTCGGAAAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCATGCTGCAGATCC
CACTACCACAACCCTCGATCCAACTAGA
Found at i:26245714 original size:26 final size:26
Alignment explanation
Indices: 26245672--26245751 Score: 124
Period size: 26 Copynumber: 3.1 Consensus size: 26
26245662 GATCTGATCT
* *
26245672 TAGACTGGGAATGAACTTCGTATGCC
1 TAGACTGGGGATCAACTTCGTATGCC
*
26245698 TAGACTGGGGATCAACTCCGTATGCC
1 TAGACTGGGGATCAACTTCGTATGCC
*
26245724 TAGATTGGGGATCAACTTCGTATGCC
1 TAGACTGGGGATCAACTTCGTATGCC
26245750 TA
1 TA
26245752 AGTCAACTCA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTGGGGATCAACTTCGTATGCC
Found at i:26249705 original size:26 final size:26
Alignment explanation
Indices: 26249676--26249728 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26249666 GGCTCAAAAC
* *
26249676 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
26249702 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
26249728 C
1 C
26249729 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:26250206 original size:26 final size:26
Alignment explanation
Indices: 26250177--26250229 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26250167 CCAATTTGAT
26250177 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
26250203 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
26250229 C
1 C
26250230 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:26250747 original size:157 final size:157
Alignment explanation
Indices: 26250351--26250748 Score: 349
Period size: 157 Copynumber: 2.5 Consensus size: 157
26250341 GATCCCGCTA
* * * * *
26250351 TCAGTCCTGCTGCCATAACCTTCGGTCCGATTGGGGCTCAGACATTGAATGTACTCCGTATGCCT
1 TCAGTCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATG-ACTCCGTATGCCT
* * * ** * *
26250416 AAGCCAACCCATGAAACAAGCGAACGGGCGCTCAACCGGCCTGAGAGGCAGAATGTGCAAGTCGA
65 AAGCTAACCCATGAAACGAGCGAACGGGCGCTCAACCAGCCAAAGAGGCAGAATGCGCAAGCCGA
*
26250481 GGATCGATCCGACCCCTCCTGCGTACTG
130 GGATCGATCCGACCCCTCCTACGTACTG
* * ** * **
26250509 TC-GATCCTGCTGACGCAACCCTCGGTCTAGTTCGATCTTAGAC-TAGGAATGAACTCCGTATGC
1 TCAG-TCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACAT-GGAATG-ACTCCGTATGC
* ** *** * * * *
26250572 ATAAG-TCAACCCGCGAAACGAGCGTGTGGGTGCT-GAGCAGCCAAAGAGGCATAATGCGCAA-C
63 CTAAGCT-AACCCATGAAACGAGCGAACGGGCGCTCAACCAGCCAAAGAGGCAGAATGCGCAAGC
* * * * *
26250634 CGAGGATCAGCTCGGTCCCC-CTCTATGTGCTG
127 CGAGGATC-GATCCGACCCCTC-CTACGTACTG
* *
26250666 TCAGTCCCGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAGCTCCCTATGCCT
1 TCAGTCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGA-CTCCGTATGCCT
26250731 AAGCTAACCCATGAAACG
65 AAGCTAACCCATGAAACG
26250749 GGTGTGCTGG
Statistics
Matches: 183, Mismatches: 48, Indels: 19
0.73 0.19 0.08
Matches are distributed among these distances:
156 10 0.05
157 100 0.55
158 73 0.40
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
TCAGTCCTGCTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGACTCCGTATGCCTA
AGCTAACCCATGAAACGAGCGAACGGGCGCTCAACCAGCCAAAGAGGCAGAATGCGCAAGCCGAG
GATCGATCCGACCCCTCCTACGTACTG
Found at i:26250890 original size:26 final size:26
Alignment explanation
Indices: 26250861--26250911 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26250851 CAATTCGATC
26250861 TTAGACTGGGAATGAACTCCATATGT
1 TTAGACTGGGAATGAACTCCATATGT
* *
26250887 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
26250912 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:26251724 original size:26 final size:26
Alignment explanation
Indices: 26251687--26251739 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26251677 GGTTCAAAAT
* *
26251687 CTTAGACTAGGAATGAGCTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
26251713 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
26251739 C
1 C
26251740 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:26252188 original size:158 final size:155
Alignment explanation
Indices: 26251713--26252209 Score: 455
Period size: 157 Copynumber: 3.2 Consensus size: 155
26251703 GCTCCGTATG
* * * *
26251713 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCAAGGGGCGCTCAGCC
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGCGCTCAGCA
** * * * * *
26251778 GGCTAGAGAGGCAGAAT-CACAAGCCAAGGATCGA-CTTGTCCCCACCTGCATGCTGTCGATCCT
65 GGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTAGTCCCC-CCTACGTGCTGTCGATCCT
** *
26251841 GCTGTTGCAACCCTTGGTCCGATCCGAT
129 GCTGCCGCAA-CCTCGGTCCGATCCGAT
* ** * * * * * *
26251869 CTTAGACTGGGAATGAACTCCGTATGTATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGC
1 CTTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGC-GGCGCTCAGC
* * * * *
26251934 AGGCCGAAGAGG-ATAATGTGCAAGCCGAGGAT-GGCCTAGTCCCCCTCTACGTGCTGTCGGTCC
64 AGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTAGTCCCCC-CTACGTGCTGTCGATCC
* * * * **
26251997 CGCTGCCACAACTCTCGGTCCG-GCTGGGG
128 TGCTGCCGCAAC-CTCGGTCCGATC-CGAT
* ** * *
26252026 CTTAGAAATGGAATGAGCTCCCCATACCTAAGCCAACCCATGAAACGGGCATGCGGCTGCTCAGC
1 CTTAG-AATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGC-GCTCAGC
* * *
26252091 TGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGGTCCCCCCTACGTGCTGCCGATCCT
64 AGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTAGTCCCCCCTACGTGCTGTCGATCCT
*
26252156 ACTGCCGCAACCATCGGTCCGATCCGAT
129 GCTGCCGCAACC-TCGGTCCGATCCGAT
* *
26252184 CTTAGACTGGAATGAACTTCGTATGC
1 CTTAGAATGGAATGAACTCCGTATGC
26252210 TTAGACTGGG
Statistics
Matches: 259, Mismatches: 69, Indels: 25
0.73 0.20 0.07
Matches are distributed among these distances:
156 54 0.21
157 135 0.52
158 58 0.22
159 12 0.05
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (155 bp):
CTTAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGCGCTCAGCAG
GCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTAGTCCCCCCTACGTGCTGTCGATCCTGC
TGCCGCAACCTCGGTCCGATCCGAT
Found at i:26252218 original size:25 final size:26
Alignment explanation
Indices: 26252184--26252235 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26252174 CCGATCCGAT
*
26252184 CTTAGACT-GGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26252209 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26252235 C
1 C
26252236 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26253299 original size:26 final size:26
Alignment explanation
Indices: 26253261--26253313 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26253251 GGCTTAAAAT
*
26253261 CTTAGACTGGGAATGAGCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26253287 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
26253313 C
1 C
26253314 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26253780 original size:26 final size:26
Alignment explanation
Indices: 26253751--26253803 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26253741 CCGGTTCGAT
* *
26253751 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26253777 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26253803 C
1 C
26253804 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26254156 original size:26 final size:26
Alignment explanation
Indices: 26254120--26254172 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26254110 CCAGTTTGAT
*
26254120 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26254146 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26254172 C
1 C
26254173 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26257788 original size:26 final size:26
Alignment explanation
Indices: 26257737--26257789 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26257727 GGCTCAAAAT
* *
26257737 CTTAGACTGGGAATGAGCTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26257763 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
26257789 C
1 C
26257790 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26258265 original size:158 final size:157
Alignment explanation
Indices: 26257763--26258265 Score: 437
Period size: 159 Copynumber: 3.2 Consensus size: 157
26257753 GCTCTATATG
*
26257763 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAGGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCGCTCAGT
* * * * ** *
26257828 CGGTCGGAGAGGAAGAATGTGCAAGCTG-GAGATCGACTCGATCCCCTCCTATGTGCTATCGATC
66 CGGTCGGAGAGGCAGAATGTGCAAGCCGAG-GATCGACCCGATCCCCT-CTGTGTGCTGCCAATC
* **
26257892 CTGCTG-TCGCAACCCTCGATCCGGTTTGAT
129 CTGCTGCT-GCAACCCTCGGTCC-GTCCGAT
* * * * * * * *
26257922 CTTATAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCAATGAAACGAGCGTGCGGGTGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCC-ACGAAAGGAGCGTGCGGGCGCTCA
* ** * * * * * *
26257986 G-CGGTCGAAGAAACATAATATGCAAGCC-AGGGATCGGCCCGATCCCTCTCTGCGTACTGCCAG
64 GTCGGTCGGAGAGGCAGAATGTGCAAGCCGA-GGATCGACCCGATCCC-CTCTGTGTGCTGCCAA
** * * * * **
26258049 TCCTGCTGCCACAACCCTAGGTTCGGCTGGGG
127 TCCTGCTGCTGCAACCCTCGGTCCGTC-CGAT
* *
26258081 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGA-CGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GGAGCGTGCGGGCGCTCAG
* ** *
26258145 TCAGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCTG-TCCCCTTTGTGTGCTGCCAATC
65 TCGGTCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCC-GATCCCCTCTGTGTGCTGCCAATC
*
26258209 CTGCTGCTGCAACCTTCGGTCCAGTCCGAT
129 CTGCTGCTGCAACCCTCGGTCC-GTCCGAT
*
26258239 CTTAGAC-TGGGAATGAACTCAGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
26258266 TTAGACTGGG
Statistics
Matches: 260, Mismatches: 70, Indels: 29
0.72 0.19 0.08
Matches are distributed among these distances:
157 1 0.00
158 74 0.28
159 159 0.61
160 26 0.10
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCGCTCAGT
CGGTCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGATCCCCTCTGTGTGCTGCCAATCCT
GCTGCTGCAACCCTCGGTCCGTCCGAT
Found at i:26258268 original size:26 final size:26
Alignment explanation
Indices: 26258239--26258291 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26258229 CCAGTCCGAT
26258239 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
* *
26258265 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
26258291 C
1 C
26258292 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:26259351 original size:26 final size:26
Alignment explanation
Indices: 26259322--26259372 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26259312 GCTCAAAATC
*
26259322 TTAGAC-TGGGAATGAGCTCCGTATGT
1 TTAGACAT-GGAATGAACTCCGTATGT
26259348 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
26259373 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGT
Found at i:26259741 original size:159 final size:158
Alignment explanation
Indices: 26259348--26259796 Score: 419
Period size: 159 Copynumber: 2.8 Consensus size: 158
26259338 CTCCGTATGT
* *
26259348 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTC-GAT
1 TTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGGGCGTGCGGGCGCTCAG-C
* * * * * *
26259412 CGATCAGAGAGGCAGAATGCGTAAGTCGGGGATCGACCTGGTCCCCCCCTGTGTGCTATCGATCC
64 CGACCGGAGAGGCAGAATGCGTAAGTCAGGGATCGACCCGGTCCCCCCCTGCGTGCTACCGATCC
* * * *
26259477 TGCTGCCATAACCTTCGGTCCAATTTGATC
129 TGCTGCCACAACCTTCGATCCAATTGGAGC
* * * * *
26259507 TTAGACAGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCT
1 TTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGGGCGTGCGGGCGCTCAGCC
* * * * ** * *
26259572 GGCTGAAGAGGCATAATGCAG-AAGTCAGGGATCGACCCGGTCCCCCTTTGCGTGCTGCCGGT-C
65 GACCGGAGAGGCAGAATGC-GTAAGTCAGGGATCGACCCGGTCCCCCCCTGCGTGCTACCGATCC
*** *
26259635 TCGCTAG-CACAACCGTT-GATTTGATTGGGGC
129 T-GCT-GCCACAACC-TTCGATCCAATTGGAGC
* * *
26259666 TTAGACATGGAATGAGCTCCCTATGCCTAAGCAAACCCACGAAACGGGCGTGCAGGCGCTCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGGGCGTGCGGGCGCTCAGCC
* * * * **
26259731 GACCGGAGAGGCAGAATGCGTAAG-CCGGGTATCAACCTGAT-CCCCCC-GCGTGCTGTCGATCC
65 GACCGGAGAGGCAGAATGCGTAAGTCAGGG-ATCGACCCGGTCCCCCCCTGCGTGCTACCGATCC
26259793 TGCT
129 TGCT
26259797 ACCGTAACCC
Statistics
Matches: 231, Mismatches: 50, Indels: 20
0.77 0.17 0.07
Matches are distributed among these distances:
157 14 0.06
158 14 0.06
159 198 0.86
160 5 0.02
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCG
ACCGGAGAGGCAGAATGCGTAAGTCAGGGATCGACCCGGTCCCCCCCTGCGTGCTACCGATCCTG
CTGCCACAACCTTCGATCCAATTGGAGC
Found at i:26261292 original size:159 final size:158
Alignment explanation
Indices: 26260947--26261314 Score: 440
Period size: 158 Copynumber: 2.3 Consensus size: 158
26260937 TAGACATATT
* * *
26260947 GAATTAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAGCCGACCAGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTTAGCCGACCAGAAA
* * * *
26261012 GGCAAAATGAGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAA
66 GGCAAAATGAGCAAGACAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCCGCTGCCACAA
* *
26261077 CCCTTGGTCTGATCCGATCTTAGACTGG
131 CCCTCGGTCTGATACGATCTTAGACTGG
* * * *
26261105 GAATGAACTCCGTAT-CCATAAGTCAACCCATGAAACGAGCGTACGGGC-GTTGAGTCGACC-GA
1 GAATGAACTCCGTATGCC-TAAGCCAACCCATGAAACGAGCGTGCGGGCACTT-AGCCGACCAG-
* * * *
26261167 AAAGGCATAATGCGCAAGACAGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTGCC
63 AAAGGCAAAATGAGCAAGACAGGGATCGACCCGGTCCCCC-CTACGTGCTGTCGATCCCGCTGCC
* * *
26261232 ACAACCCTCGGTCTGGCTAGGGT-TTAGACAT-G
127 ACAACCCTCGGTCT-GATACGATCTTAGAC-TGG
* * *
26261264 GAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACT
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACT
26261315 CAACTGGCCG
Statistics
Matches: 176, Mismatches: 26, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
157 5 0.03
158 82 0.47
159 81 0.46
160 8 0.05
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTTAGCCGACCAGAAA
GGCAAAATGAGCAAGACAGGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCCGCTGCCACAA
CCCTCGGTCTGATACGATCTTAGACTGG
Found at i:26261332 original size:159 final size:158
Alignment explanation
Indices: 26260947--26261366 Score: 436
Period size: 159 Copynumber: 2.6 Consensus size: 158
26260937 TAGACATATT
* * * * *
26260947 GAATTAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAGCCGACCAGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTTAACTGACCGGAGA
* * * * *
26261012 GGCAAAATGAGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCACA
66 GGCAAAATGCGCAAGAC-GGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCACA
* *
26261076 ACCCTTGGTCTGATCCGATCTTAGACTGG
130 ACCCTCGGTCTGATACGATCTTAGACTGG
* * * * * *
26261105 GAATGAACTCCGTAT-CCATAAGTCAACCCATGAAACGAGCGTACGGGC-GTTGAGTCGACCGAA
1 GAATGAACTCCGTATGCC-TAAGCCAACCCATGAAACGAGCGTGCGGGCACTTAACT-GACCGGA
* * *
26261168 AAGGCATAATGCGCAAGACAGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTGCCA
64 GAGGCAAAATGCGCAAGAC-GGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCA
* * *
26261233 CAACCCTCGGTCTGGCTAGGGT-TTAGACAT-G
128 CAACCCTCGGTCT-GATACGATCTTAGAC-TGG
* * * * *
26261264 GAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAACTGGCCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTTAACTGACCGGAGA
* * * * *
26261329 GGCAGAATGCACAAGTCGAAGATCGGCCTGGTCCCCCT
66 GGCAAAATGCGCAAGACG-GGATCGGCCCGGTCCCCCT
26261367 TGCATGCTAC
Statistics
Matches: 212, Mismatches: 42, Indels: 15
0.79 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 80 0.38
159 118 0.56
160 10 0.05
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (158 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTTAACTGACCGGAGA
GGCAAAATGCGCAAGACGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATCCCGCTGCCACAA
CCCTCGGTCTGATACGATCTTAGACTGG
Found at i:26261831 original size:26 final size:26
Alignment explanation
Indices: 26261779--26261831 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26261769 CCAGTCCAAT
* *
26261779 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
26261805 CTTAGACT-GGAGATGAACTCCGAATG
1 CTTAGACTGGGA-ATGAACTCCGAATG
26261831 C
1 C
26261832 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:26263074 original size:158 final size:155
Alignment explanation
Indices: 26262529--26263184 Score: 527
Period size: 158 Copynumber: 4.2 Consensus size: 155
26262519 CTCCGTATGG
* *
26262529 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTA
1 TTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
* * * * * *
26262594 GGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGA-CCTAGTCCCCCTGCTTGCTGTCGATCCTG
66 GACCGAAGAGGCAGAATGCGTAAG-CCGGGATCGACCCGA-TCCCCCTGCATGCTGTCGATCCTG
** *
26262658 CTGCCGCAACCCTTGGTCCGGTTCAATC
129 CTGCCGCAACCCTCAGTCCGGTT-GATC
* * * ** * **
26262686 TTAGA-TTGGGAAAGAACTCCGTATGCATAAGTCAACTAATGAAACGAGCGTGCGGGCGCTCAAC
1 TTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * *
26262750 CGACC-AGAGAGGTAGAATGCGTAAGCCGGGGATTGACCCGGTCCCCCTTACGTGCTGTCGATCC
65 CGACCGA-AGAGGCAGAATGCGTAAGCC-GGGATCGACCCGATCCCCC-TGCATGCTGTCGATCC
* * * *
26262814 TACTACCGCAACCCTCAGCCCGATCTGATC
127 TGCTGCCGCAACCCTCAGTCCGGT-TGATC
* * * * *
26262844 TTAGAC-TGAGAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAG-
1 TTAGACATG-GAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * *
26262907 CTGGCCGAAGAGGCATAATGCAGTAAGCCGGGATCGACCCGATCCCCTCTGCATGCTGTCGGTCT
65 C-GACCGAAGAGGCAGAATGC-GTAAGCCGGGATCGACCCGATCCCC-CTGCATGCTGTCGATCC
** * **
26262972 TGCTGCCAAAACCCTCAGTTCGGTTGGGGC
127 TGCTGCCGCAACCCTCAGTCCGGTT-GATC
* * *
26263002 TTAGACATGGAAT-AAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGT
1 TTAGACATGGAATGAA-CTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * ** * * * * * *
26263066 CGATCGAAGAGGTAGAATGCATAAAACAAGGATC-AGTCCGGTTCCCTTGCGTGCTATCGATCCT
65 CGACCGAAGAGGCAGAATGCGT-AAGCCGGGATCGA-CCCGATCCCCCTGCATGCTGTCGATCCT
* * ** *
26263130 GTTGTCGCAACCCTTGGTCTGGTCTGATC
128 GCTGCCGCAACCCTCAGTCCGGT-TGATC
*
26263159 TTACAC-TGGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
26263185 TTAGACTGGG
Statistics
Matches: 388, Mismatches: 90, Indels: 42
0.75 0.17 0.08
Matches are distributed among these distances:
156 3 0.01
157 141 0.36
158 231 0.60
159 13 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (155 bp):
TTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
GACCGAAGAGGCAGAATGCGTAAGCCGGGATCGACCCGATCCCCCTGCATGCTGTCGATCCTGCT
GCCGCAACCCTCAGTCCGGTTGATC
Found at i:26263194 original size:26 final size:26
Alignment explanation
Indices: 26263158--26263210 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26263148 CTGGTCTGAT
26263158 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* * *
26263184 CTTAGACTGGGGATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
26263210 C
1 C
26263211 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:26263555 original size:26 final size:26
Alignment explanation
Indices: 26263526--26263578 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26263516 CCAATCTGAT
*
26263526 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCTGCATG
* *
26263552 CTTAGACTGGGGATGAACTCTGCATG
1 CTTAGAATGGGAATGAACTCTGCATG
26263578 C
1 C
26263579 CAAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCTGCATG
Found at i:26263886 original size:356 final size:360
Alignment explanation
Indices: 26263156--26263985 Score: 1019
Period size: 356 Copynumber: 2.3 Consensus size: 360
26263146 GTCTGGTCTG
*
26263156 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT-TCGTATGCCTAAGTCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCT-GTATGCCTAAGTCAA
* * * * * * *
26263220 CTCATGAAACGAGCGTGCAGACGCTCAGCCGGCCGGAGAGGCCAGTCGAAGAGGCATAATGCGCA
65 CCCATGAAATGAGCGTGCGGGCGCTCAGCC-GCCAGAGAGGCCAATCGAAGAGGCATAATGCACA
* *
26263285 AGCTGGGGATCAGCTCGATCCCCCTCTACGTGCTACCGATCTCGCTGCTGGTCCTACTGCCACAA
129 AGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTACCGA-CTC-C-GCTGG--C--CTGCCACAA
* * * *
26263350 CCCTTGGTCTGACTGGGGCTTAGACACGGAATGTACCCCGTATGCCTAAGCCAACACATGAAACG
187 CCCTCGGTCCGACTGGGGCTTAGACACGGAATGTACCCCGTATGCCTAAACCAACACACGAAACG
** *
26263415 AGCGTGCAGGTGCTCAGCCGATCGGAGAGGCAGAATGTGCAATTCAGGGATCGGCCCGGTTCCCC
252 AGCGTGCAGGTGCTCAGCCGATCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCAGTTCCCC
* * * * * **
26263480 CTGCGTGCTATCGATCTTACTACCGTAACCCTCGATCCAATCTG
317 CTACGTGCTACCGATCCTACTACCGCAACCATCGATCCAATCCA
* * * * *
26263524 ATCTTAGAATGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCTGCATGCCAAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAAC
* * *
26263589 CCATGAAATGAGCGTGCGGGTGCTCAGCCAGCCAGAGATGCCAATCGGAGAGGCATAATGCACAA
66 CCATGAAATGAGCGTGCGGGCGCTCAGCC-GCCAGAGAGGCCAATCGAAGAGGCATAATGCACAA
26263654 GCCGGGGATCAGCCC-AGTCCCCCTCTACGTGCTACCGA-T-C-CT-G-CTGCCACAACCCTCGG
130 GCCGGGGATCAGCCCGA-TCCCCCTCTACGTGCTACCGACTCCGCTGGCCTGCCACAACCCTCGG
* ** * * *
26263713 TCCGGCTGGGGCTTAGACTTGGAATGTACTCTGTATGCCTAAACCAACCCACGAAACGAGCGTGC
194 TCCGACTGGGGCTTAGACACGGAATGTACCCCGTATGCCTAAACCAACACACGAAACGAGCGTGC
* * *
26263778 GGGTGCTCAGCTGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCAG-TCCCTCCTACGT
259 AGGTGCTCAGCCGATCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCAGTTCCC-CCTACGT
* * **
26263842 GCTGCCGATCCTGCTACCGCAACCATCGATCCGGTCCA
323 GCTACCGATCCTACTACCGCAACCATCGATCCAATCCA
* * * *
26263880 ATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAAC
* * *
26263945 CAACGAAATGAGCGTACGGGCGCTCAGCCGACCAGAGAGGC
66 CCATGAAATGAGCGTGCGGGCGCTCAGCCG-CCAGAGAGGC
26263986 AGGATGCGTA
Statistics
Matches: 398, Mismatches: 60, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
355 5 0.01
356 241 0.61
361 1 0.00
362 2 0.01
364 1 0.00
366 1 0.00
367 1 0.00
368 145 0.36
369 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (360 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAAC
CCATGAAATGAGCGTGCGGGCGCTCAGCCGCCAGAGAGGCCAATCGAAGAGGCATAATGCACAAG
CCGGGGATCAGCCCGATCCCCCTCTACGTGCTACCGACTCCGCTGGCCTGCCACAACCCTCGGTC
CGACTGGGGCTTAGACACGGAATGTACCCCGTATGCCTAAACCAACACACGAAACGAGCGTGCAG
GTGCTCAGCCGATCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCAGTTCCCCCTACGTGCT
ACCGATCCTACTACCGCAACCATCGATCCAATCCA
Found at i:26263911 original size:26 final size:26
Alignment explanation
Indices: 26263882--26263931 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
26263872 CCGGTCCAAT
*
26263882 CTTAGACT-GGGAATGAACTCCGTAAG
1 CTTAGACTAGGG-ATAAACTCCGTAAG
26263908 CTTAGACTAGGGATAAACTCCGTA
1 CTTAGACTAGGGATAAACTCCGTA
26263932 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGGATAAACTCCGTAAG
Found at i:26265509 original size:26 final size:26
Alignment explanation
Indices: 26265473--26265525 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26265463 CCAGTTCGAT
26265473 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26265499 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26265525 C
1 C
26265526 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26265525 original size:368 final size:353
Alignment explanation
Indices: 26264919--26265909 Score: 1121
Period size: 354 Copynumber: 2.8 Consensus size: 353
26264909 TACCGGTCTC
** * *
26264919 GCTACCACAACCCTCGGTTTAGCTGGGGCTT-GACATGGAATG-AGCTCCCTATGCCTAAGCCAA
1 GCTACCACAACCCTCGGTTCGGCTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAA
* * * * * *
26264982 CCCACGAAATGGGCGTGCTGGTGCTCAGTCGGTCGGAAAGGTACAATGCGCAAGTCAGGGGATCA
65 CCCACGAAATGAGCGTACGGGTGCTCAGCCGGTCGGAAAGGTAGAATGCGCAAGTC-GGGGATCG
* * * * * * * *
26265047 GTCTGATCCACCTTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCCGGTCCGAACATAGAC
129 GCCCGATCC-CCCTGTGTGCTGTCGATCCTGCTCT-GCAACCCTCGATCCGGTCCGATCTTAGAC
* * * * *
26265112 TGGAAATGAACTCTGTATGCTTGGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
192 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* *
26265177 AAGCGTGCGGGCGATCAACCGATCGGAAAGGCCAACCGGAGAGGCATAATACGCAAGTC-GGGGA
257 GAGCGTGCGGGCGATC-A--G--C----AGG----CCGGAGAGGCATAATACGCAAG-CAAGGGA
* * *
26265241 TCAGCCCGATCCCCCACTACATGGTGCGGATCATACTATCGATCCT
308 TCAGCCCGATCCCCCACTACATGCTACCGATCATACTATCGATCCT
* * * *
26265287 GCTACCACAACCCTCTGTCCGGCTGGGGCTTAGACGTGGAATGTACTTCGTATGCCTAAGACAAC
1 GCTACCACAACCCTCGGTTCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
** *
26265352 CCACGAAATGAGCGTACGGGTGCTCAGCCGGTCGGAGCGATAGAATGCGCAAGTCGGGGATCGGC
66 CCACGAAATGAGCGTACGGGTGCTCAGCCGGTCGGAAAGGTAGAATGCGCAAGTCGGGGATCGGC
* * * *
26265417 CCGGTCCCTCCGGTGTGCTGTCGATCCTGCTACTGCAACCCTCGATCCAGTTCGATCTTAGACTG
131 CCGATCCC-CCTGTGTGCTGTCGATCCTGCT-CTGCAACCCTCGATCCGGTCCGATCTTAGACTG
26265482 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
194 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * *
26265547 GCGTGTGGGTGCTCAGCTGGCCGGAGAGGCATAATGCGCAAGCAAGGGATCAGCCCGATCCCCCT
259 GCGTGCGGGCGATCAGCAGGCCGGAGAGGCATAATACGCAAGCAAGGGATCAGCCCGATCCCCCA
** * * * * * *
26265612 CTGGATGCTACCTATCCTGCTGTTGGTCCT
324 CTACATGCTACCGATCATACTATCGATCCT
*
26265642 GCTACCACAACCCTCGGTTCGAC-GGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
1 GCTACCACAACCCTCGGTTCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
* * * * * * * *
26265706 CCACAAAATGAGTGTACGGGCGCTC-GACAGG-CCGAATAGGCAGAATGCGCAAGCCAGGGATCG
66 CCACGAAATGAGCGTACGGGTGCTCAG-CCGGTCGGAA-AGGTAGAATGCGCAAGTCGGGGATCG
* * * *
26265769 GCTCGATCCCCACTGTGTGCTGTCGATCTTGCTGTTGCAACCCTCGATTCGGTCCGATCTTAGAC
129 GCCCGATCCCC-CTGTGTGCTGTCGATCCTGCT-CTGCAACCCTCGATCCGGTCCGATCTTAGAC
*
26265834 TGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
192 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
26265899 GAGCGTGCGGG
257 GAGCGTGCGGG
26265910 AGCTCAGTTG
Statistics
Matches: 535, Mismatches: 80, Indels: 30
0.83 0.12 0.05
Matches are distributed among these distances:
353 5 0.01
354 214 0.40
355 79 0.15
359 2 0.00
363 1 0.00
365 1 0.00
367 2 0.00
368 155 0.29
369 75 0.14
370 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (353 bp):
GCTACCACAACCCTCGGTTCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
CCACGAAATGAGCGTACGGGTGCTCAGCCGGTCGGAAAGGTAGAATGCGCAAGTCGGGGATCGGC
CCGATCCCCCTGTGTGCTGTCGATCCTGCTCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
GTGCGGGCGATCAGCAGGCCGGAGAGGCATAATACGCAAGCAAGGGATCAGCCCGATCCCCCACT
ACATGCTACCGATCATACTATCGATCCT
Found at i:26265856 original size:26 final size:26
Alignment explanation
Indices: 26265827--26265879 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26265817 TCGGTCCGAT
*
26265827 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26265853 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26265879 C
1 C
26265880 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26266189 original size:27 final size:26
Alignment explanation
Indices: 26266144--26266197 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 26
26266134 TCGGTTCAAT
26266144 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26266170 CTTAGACATGGCG-ATGAACTCCGTATG
1 CTTAGAC-TGG-GAATGAACTCCATATG
26266197 C
1 C
26266198 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 7 0.28
27 17 0.68
28 1 0.04
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26266790 original size:11 final size:11
Alignment explanation
Indices: 26266774--26266798 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26266764 AGGTTAGGCT
26266774 CTCCGGCAATG
1 CTCCGGCAATG
26266785 CTCCGGCAATG
1 CTCCGGCAATG
26266796 CTC
1 CTC
26266799 TAATGATGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.40, G:0.24, T:0.20
Consensus pattern (11 bp):
CTCCGGCAATG
Found at i:26267316 original size:159 final size:159
Alignment explanation
Indices: 26266901--26267333 Score: 487
Period size: 159 Copynumber: 2.7 Consensus size: 159
26266891 AGCTCCTTAT
* * * *
26266901 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCGTGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * ** ** * *
26266966 CCGATTGGAGAGGCAGAATGCACAAGTCGGGGATCAACCTAATCCCCCCCTACGTGTTGTCGATC
66 CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGATCCCCCTTTACGTGCTGCCGATC
* * *
26267031 CTGCTGCCGCAACCCTCGGTCCGGTCCGA
131 CCGCTGCCACAACCCTCGGTCCGCTCCGA
* * * * * *
26267060 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGTCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
26267124 GCCGGTCGAAGAGGCATAATG-AGCAAGTCGGGGAACGGCCCGATCCCCCTTTGCGTGCTGCCGA
65 GCCGGTCGGAGAGGCAGAATGCA-CAAGTCGGGGATCAGCCCGATCCCCCTTTACGTGCTGCCGA
* *
26267188 TCCCGCTGCCACAACCCTCGGTCCGACT-GGG
129 TCCCGCTGCCACAACCCTCGGTCCG-CTCCGA
* * *
26267219 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
26267284 CCGGCCGGAGAGGAAGAATGCACAAG-CTGGGGATCAGCCCGGTCCCCCTT
66 CCGGTCGGAGAGGCAGAATGCACAAGTC-GGGGATCAGCCCGATCCCCCTT
26267334 GAATGCTGTC
Statistics
Matches: 223, Mismatches: 45, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
158 3 0.01
159 217 0.97
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCAGCCCGATCCCCCTTTACGTGCTGCCGATC
CCGCTGCCACAACCCTCGGTCCGCTCCGA
Found at i:26267406 original size:26 final size:26
Alignment explanation
Indices: 26267367--26267428 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
26267357 TCGGTCCGAT
26267367 CTCCGTATGCTTAGACTGGGGATGAA
1 CTCCGTATGCTTAGACTGGGGATGAA
*
26267393 CTTCGTATGCTTAGACTGGGGATGAA
1 CTCCGTATGCTTAGACTGGGGATGAA
26267419 CTCCGTATGC
1 CTCCGTATGC
26267429 CTAAGCAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (26 bp):
CTCCGTATGCTTAGACTGGGGATGAA
Found at i:26267794 original size:26 final size:26
Alignment explanation
Indices: 26267744--26267796 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26267734 CCGGTCCGAT
**
26267744 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTACGTATG
26267770 CTTAGACTAGGG-ATGAACTACGTATG
1 CTTAGACT-GGGAATGAACTACGTATG
26267796 C
1 C
26267797 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:26267963 original size:355 final size:351
Alignment explanation
Indices: 26267196--26268236 Score: 1006
Period size: 355 Copynumber: 2.9 Consensus size: 351
26267186 GATCCCGCTG
* * *
26267196 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCA
1 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGTA-CTTCGTATGCCTAAGCCAACCCA
* * * *
26267260 TGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGAAGAATGCACAAGCTGGGGATCAGCCCG
65 TGAAACGAGCGTGCGGGCGCTCAGCCGGCCCGAGAGGAAGAATGCATAAGCAGGGGATCAGCCCG
* **
26267325 GTCCCCCTTGAATGCTGTCGATCCTACTCGGTTCG--GTCC-GAT-C-TCCGTATGCTTAGACTG
130 GTCCCCCCTGAATGCT-TCGATCCTACT--G-TCGCAACCCTGATCCGTCCG-AT-CTTAGACTG
* *
26267385 GGGATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCAAACCCACAAAACGA
189 GGAATGAACTTCGTATGCTTAGACTGGGGATGAACT-CGTATGCCTAAGC-AACCCACGAAACGA
* * * * *
26267450 GTATCCGGGCACTCAACCAGCCAGAGAGGTCGGTCGAAGAGGCATAATGTGCAAGCCGGGGATCT
252 GCATGCGGGCGCTC-A--A-CC--AGA-G-C-G--G-AGAGGCATAATGCGCAAGCCGGGGATCA
* * * * *
26267515 ACCCGGTCCCCCTCTGCGTGCTGTCGATCCCACTGCCAGTCCTGCTA
305 ACCCGATCCCCCTCTACGAGCTATCGATCCCACTACCAGTCCTGCTA
* * * * *
26267562 CCATAATCCTC-AGTCTGACTGGGGCTTAGACATGGAATGTACTTCGTATACCTAAGCCAACCTA
1 CCACAACCCTCGA-TCCGACTGGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGCCAACCCA
* * * * * ** * * *
26267626 TGAAATGAGCGTGCAGGTGCTCAACCGACCTAAGAGGTAGAATGCGTAAGCCGGGGATCAGCCCG
65 TGAAACGAGCGTGCGGGCGCTCAGCCGGCCCGAGAGGAAGAATGCATAAGCAGGGGATCAGCCCG
* *
26267691 GTCCCCCCTGCATGCTTCTGATCCTGCTGTCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGA
130 GTCCCCCCTGAATGCTTC-GATCCTACTGTCGCAACCC-TGATCC-GTCCGATCTTAGACTGGGA
* *
26267756 ATGAACTTTGTATGCTTAGACTAGGGATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCA
192 ATGAACTTCGTATGCTTAGACTGGGGATGAACT-CGTATGCCTAAG-CAACCCACGAAACGAGCA
* *
26267821 TGCAGGCGCTCAACCAGA-CGGAGAGGCATAATGCGCAAGCCGGGGATCAATCCGATCCCCCTCT
255 TGCGGGCGCTCAACCAGAGCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCT
* * *
26267885 ATGAGCTATCGATCCCGCTACCGGTCCTGCTA
320 ACGAGCTATCGATCCCACTACCAGTCCTGCTA
* * * *
26267917 CCACAACCCTCGATCCGGCTGGGTCTTAGACTTGGAATGTACTTCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGCCAACCCAT
* * * * *
26267982 AAAACGAGCATGCGGGCGCTCAGTCGGCCCGGGAGGCAA-AATGCATAAGCAGGGGATCGGCCCG
66 GAAACGAGCGTGCGGGCGCTCAGCCGGCCCGAGAGG-AAGAATGCATAAGCAGGGGATCAGCCCG
* ** * * * *
26268046 GTCCCTCCTGTTTGCTACCGATCCTACTG-CTGCAACCGTCGATCCGATCTGATCTTAGATTGGG
130 GTCCCCCCTGAATGCT-TCGATCCTACTGTC-GCAACCCT-GATCCG-TCCGATCTTAGACTGGG
* * * * *
26268110 AATGAACTCCATATGCATAGACTGGGGATGAACTCTGCATGCCTAAGCCAACCCATGAAACGAGC
191 AATGAACTTCGTATGCTTAGACTGGGGATGAACTC-GTATGCCTAAG-CAACCCACGAAACGAGC
* * * * * * ** * *
26268175 GTGCGGGTGCTCAGCC-GACCGGAGAGGCAGAATGCGTAAGTTGGGGATCGACCCGGTCCCCC
254 ATGCGGGCGCTCAACCAGAGCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCC
26268237 CTGTGTGCTG
Statistics
Matches: 560, Mismatches: 96, Indels: 49
0.79 0.14 0.07
Matches are distributed among these distances:
354 6 0.01
355 316 0.56
356 4 0.01
358 1 0.00
359 1 0.00
362 3 0.01
363 3 0.01
364 3 0.01
365 5 0.01
366 128 0.23
367 5 0.01
368 78 0.14
369 3 0.01
370 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (351 bp):
CCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGCCAACCCAT
GAAACGAGCGTGCGGGCGCTCAGCCGGCCCGAGAGGAAGAATGCATAAGCAGGGGATCAGCCCGG
TCCCCCCTGAATGCTTCGATCCTACTGTCGCAACCCTGATCCGTCCGATCTTAGACTGGGAATGA
ACTTCGTATGCTTAGACTGGGGATGAACTCGTATGCCTAAGCAACCCACGAAACGAGCATGCGGG
CGCTCAACCAGAGCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTACGAGC
TATCGATCCCACTACCAGTCCTGCTA
Found at i:26268232 original size:184 final size:184
Alignment explanation
Indices: 26267964--26268312 Score: 493
Period size: 184 Copynumber: 1.9 Consensus size: 184
26267954 TGTACTTCGT
* *
26267964 ATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGTCGGCCCGGGAGGCAAAATGCATA
1 ATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGTCCGACCGGGAGGCAAAATGCATA
* * * *
26268029 AGCAGGGGATCGGCCCGGTCCCTCCTGTTTGCTACCGATCCTACTGCTGCAACCGTCGATCCGAT
66 AGCAGGGGATCGACCCGGTCCCCCCTGTGTGCTACCGATCCTACTGCTGCAACCCTCGATCCGAT
*
26268094 CTGATCTTAGATTGGGAATGAACTCCATATGCATAGACTGGGGATGAACTCTGC
131 CTGATCTTAGACTGGGAATGAACTCCATATGCATAGACTGGGGATGAACTCTGC
** * * * *
26268148 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG-CCGACCGGAGAGGCAGAATGCGT
1 ATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGTCCGACCGG-GAGGCAAAATGCAT
** ** * * * *
26268212 AAGTTGGGGATCGACCCGGTCCCCCCTGTGTGCTGTCGATCCTGCTGTTGCAACCCTCGGTCTGA
65 AAGCAGGGGATCGACCCGGTCCCCCCTGTGTGCTACCGATCCTACTGCTGCAACCCTCGATCCGA
26268277 TCTGATCTTAGACTGGGAATGAACTCCATATGCATA
130 TCTGATCTTAGACTGGGAATGAACTCCATATGCATA
26268313 AGTCAACCCA
Statistics
Matches: 143, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
183 6 0.04
184 137 0.96
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (184 bp):
ATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAGTCCGACCGGGAGGCAAAATGCATA
AGCAGGGGATCGACCCGGTCCCCCCTGTGTGCTACCGATCCTACTGCTGCAACCCTCGATCCGAT
CTGATCTTAGACTGGGAATGAACTCCATATGCATAGACTGGGGATGAACTCTGC
Found at i:26268636 original size:26 final size:26
Alignment explanation
Indices: 26268600--26268652 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26268590 CCGATCCGAT
* *
26268600 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
* *
26268626 CTTAGACTGGGGATAAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
26268652 C
1 C
26268653 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCCGTATG
Found at i:26269008 original size:26 final size:26
Alignment explanation
Indices: 26268969--26269019 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26268959 GGTTCGATCA
*
26268969 TAGATTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
26268995 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
26269020 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:26269021 original size:367 final size:367
Alignment explanation
Indices: 26268459--26269416 Score: 1071
Period size: 367 Copynumber: 2.6 Consensus size: 367
26268449 ATGGAATAAG
* * * *** * ** * * *
26268459 CTCCCTATGTCTAAGCCAACCCATGAAACGAACGTATGGGTGCTCAACCGGTCAGAGAGGTAGAA
1 CTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGATCGGAGAGGCAGAA
* * ** * * * * * ** * * *
26268524 TGCGCAAGTTGAGGATCGGCCCGATCCCTCCTGCGTGCTGTCGATCCTACTGCTGCAACCTTCAG
66 TCCACAAGCCGGGGATCAGCCCGATCCCCCCTGCATGCTGCCGATCCTACCACCGCAACCCTCAA
* * * * * *
26268589 TCCGATCCGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGGATAAACTCCGTATGCC
131 TCCGGTCCGATCATAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
* * *
26268654 TAAGTCAACCCACGAAATGAGCGTGCAGGG-GCTCAGCCAGTCAGAGAGGTC-GATCGAAGAGGC
196 TAAGTCAACCCACGAAATGAGCGTAC-GGGTGCTCAGCCAGCCAGAGAGGCCTG-TCGAAGAGGC
* * ** * * * * *
26268717 ATATTATGCAAGCTGGGGATCAGCCCGATCCCCCTT-TGCATGCGGTCGATCCTGCTGCCGGTCT
259 ATAATACGCAAGCCAGGGATCAGCCCGAT-CCCCTTCTACATGCGATCGATCCCGCTGCCAGTCC
* * * * *
26268781 TGCTACCACAACCCTCGATCCGGCTGGGGCTTAGACGTGGAATGTA
323 TACTACCACAACCCTCGACCCGACT-GGGCTTAGACGTAGAATGCA
* * *
26268827 CTCTGTATGCCTAAGCCAACCCATGAAACGAGGGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAA
1 CTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGATCGGAGAGGCAGAA
** * * ** * *
26268892 TCCACAAG-CGAGGGATCAGCTTGGT-CCCCCTGCATGCTGCCGATCCTGCTGCCGTAATCCTCA
66 TCCACAAGCCG-GGGATCAGCCCGATCCCCCCTGCATGCTGCCGATCCTACCACCGCAACCCTCA
* *
26268955 ATCTGGTTCGATCATAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGC
130 ATCCGGTCCGATCATAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGC
* * *
26269020 CTAAGTCAACCCACGAAATGAGCTTACGGGTGCTCAGCCGGCCGGAGAGGCCTGTCGAAGAGGCA
195 CTAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAGCCAGCCAGAGAGGCCTGTCGAAGAGGCA
* * *
26269085 TAATACGTAAGCCAGGGATCAGCCCGATCCCCTTCTACGTGCTATCGATCCCGCTGCCAGTCCTA
260 TAATACGCAAGCCAGGGATCAGCCCGATCCCCTTCTACATGCGATCGATCCCGCTGCCAGTCCTA
* * *
26269150 CTGCCACAACCCTCGGCCCGACTGGTCTTAGACGTAGAATGCA
325 CTACCACAACCCTCGACCCGACTGGGCTTAGACGTAGAATGCA
* * *
26269193 CTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGTGCTCAGTCGATTGGAGAGGCAGAA
1 CTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGATCGGAGAGGCAGAA
* ** * ** * *
26269258 TGCGTAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTTGATCCTACCATCGCAACCCTCGA
66 TCCACAAGCCGGGGATCAGCCCGATCCCCCCTGCATGCTGCCGATCCTACCACCGCAACCCTCAA
* *
26269323 TCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGAATGGGGATGAACTCCGTATGCC
131 TCCGGTCCGATCATAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
*
26269388 TAAGTCAACCCACGAAACGAGCGTACGGG
196 TAAGTCAACCCACGAAATGAGCGTACGGG
26269417 CGTTCAGTCG
Statistics
Matches: 492, Mismatches: 92, Indels: 13
0.82 0.15 0.02
Matches are distributed among these distances:
366 101 0.21
367 323 0.66
368 68 0.14
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (367 bp):
CTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGATCGGAGAGGCAGAA
TCCACAAGCCGGGGATCAGCCCGATCCCCCCTGCATGCTGCCGATCCTACCACCGCAACCCTCAA
TCCGGTCCGATCATAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
TAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAGCCAGCCAGAGAGGCCTGTCGAAGAGGCAT
AATACGCAAGCCAGGGATCAGCCCGATCCCCTTCTACATGCGATCGATCCCGCTGCCAGTCCTAC
TACCACAACCCTCGACCCGACTGGGCTTAGACGTAGAATGCA
Found at i:26269363 original size:26 final size:26
Alignment explanation
Indices: 26269334--26269386 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26269324 CCGGTCCGAT
*
26269334 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
26269360 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
26269386 C
1 C
26269387 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:26270959 original size:26 final size:26
Alignment explanation
Indices: 26270908--26270960 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26270898 CCTGTTCAAT
* **
26270908 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
26270934 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
26270960 C
1 C
26270961 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:26271131 original size:366 final size:367
Alignment explanation
Indices: 26270652--26271337 Score: 833
Period size: 366 Copynumber: 1.9 Consensus size: 367
26270642 CAACCGGCCG
* * *
26270652 GAGAGGCATAATGCGTAAATCAGGGATCAACCTGATCCCCCTCTGCGTGTTGTCGATCCCGCTGC
1 GAGAGGCATAATGCGTAAACCAGGGATCAACCTGATCCCCCTCTGCGTGCTGTCGATCCCGCTAC
* *
26270717 CGGTCCTACTATCACAACCCTCAATTCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTA
66 CGGTCCTACTACCACAACCCTCAATCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTA
* * *** * * *
26270782 AGCCAACCCATGAAACAAGCGTGTGGGTGTTCAGTCGGCCAGAGAGGTAGAATACGT-AGCCAGG
131 AGCCAACCCACGAAACAAGCGTGCGGGCACTCAGTCGACCAGAGAGGCAGAATACATAAGCCAGG
* * * *** * * *
26270846 GATCGACCCGGTCCCCTTACGTGCTATCGATCCCGCTACTGTAACCGT-TGATCCTGT-TCAATC
196 GATCGACCAGGTCCCCCTACATGCTATCGATCCCGCTACCACAACCCTCAG-TCCGGTCT-AATC
* *
26270909 TTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCCATATGCCTAACTCAACCCA
259 TTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAACTCAACCCA
26270974 TGAAATGAGCATACGGGTGCTCCATCGGCCGGAGAGGCTGGTCA
324 TGAAATGAGCATACGGGTGCTCCATCGGCCGGAGAGGCTGGTCA
* * * * * *
26271018 GAGAGGCATAATGCGTAAGCCAGGGATC-AGCTCGATCCCTCTCTGTGTGCTGTTGATCCCTCTA
1 GAGAGGCATAATGCGTAAACCAGGGATCAACCT-GATCCCCCTCTGCGTGCTGTCGATCCCGCTA
* ** * * * * *
26271082 CCGGTCTTGTTGCCACAACCCTCGATCC-AGCTGGGGCTTAGATGTGGAATGTACTTCGTGTGCC
65 CCGGTCCTACTACCACAACCCTCAATCCGA-CTGGGGCTTAGACGTGGAATGTACTCCGTATGCC
* * * * *
26271146 TAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGATCGGAGAGGCAGAATGCATAAGCCG
129 TAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGTCGACCAGAGAGGCAGAATACATAAGCCA
* * * * *
26271211 GGGATCGGCCAGGTCCCCCTGCATGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCTGATC
194 GGGATCGACCAGGTCCCCCTACATGCTATCGATCCCGCTACCACAACCCTCAGTCCGGTCTAATC
* * * *
26271276 TTAGTCTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAAC
259 TTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAACTCAAC
26271338 ACACGAAACG
Statistics
Matches: 263, Mismatches: 52, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
365 4 0.02
366 150 0.57
367 107 0.41
368 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (367 bp):
GAGAGGCATAATGCGTAAACCAGGGATCAACCTGATCCCCCTCTGCGTGCTGTCGATCCCGCTAC
CGGTCCTACTACCACAACCCTCAATCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTA
AGCCAACCCACGAAACAAGCGTGCGGGCACTCAGTCGACCAGAGAGGCAGAATACATAAGCCAGG
GATCGACCAGGTCCCCCTACATGCTATCGATCCCGCTACCACAACCCTCAGTCCGGTCTAATCTT
AGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAACTCAACCCATG
AAATGAGCATACGGGTGCTCCATCGGCCGGAGAGGCTGGTCA
Done.