Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 272 of 402
Found at i:26271304 original size:26 final size:26
Alignment explanation
Indices: 26271275--26271327 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26271265 CCGGTCTGAT
* *
26271275 CTTAGTCTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
26271301 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
26271327 C
1 C
26271328 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:26272376 original size:159 final size:158
Alignment explanation
Indices: 26272023--26272466 Score: 426
Period size: 159 Copynumber: 2.8 Consensus size: 158
26272013 TCCGTATGCC
* * ** *
26272023 TAGACATGGAATGAACTCCGTATGCCTAACCCAACCCATGAAACAAGCGTGCGGGCGCTCAGCAA
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCAA
* ** **
26272088 GTCGAAGAGGCAGAATGCACAAGCTGGGGATCGACCCGATCCCCCCTACGTGCTATCGATCTTGC
66 GCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTATCGATCTCAC
* * * *
26272153 TGCCACAACCCTCGGTTTGGTCTGATCT
131 TGCCACAAACCTCGGTCTGGACTGAGCT
* * * *
26272181 TAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCC
1 TAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCA
* * ** * * * * *
26272245 GGCCGAAGAGGCATAATGTGCAAGCCAGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCGGTCTC
65 AGCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCC-CTACGTGCTATCGATCTC
*
26272310 ACTGCCACAAACCTCGGTCT-GACTGGGGCT
129 ACTGCCACAAACCTCGGTCTGGACT-GAGCT
* * * * * * *
26272340 TAGTCATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAAC-C
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCAA
* * * * ** * * * *
26272404 GTCCGGAGAAGCAGAATTCGCAAGCTTGGGATCGACCCAATCCCTCCTGCGTGCTACCGATCT
66 G-CCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTATCGATCT
26272467 TGTTACCGTA
Statistics
Matches: 229, Mismatches: 52, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
157 1 0.00
158 108 0.47
159 119 0.52
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCAA
GCCGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTATCGATCTCAC
TGCCACAAACCTCGGTCTGGACTGAGCT
Found at i:26272540 original size:26 final size:26
Alignment explanation
Indices: 26272496--26272548 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26272486 CCAGTTCGAT
* * *
26272496 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
26272522 CTTAGACTGGGGATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
26272548 C
1 C
26272549 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:26272606 original size:13 final size:13
Alignment explanation
Indices: 26272588--26272613 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26272578 GTGCTCAACC
26272588 GGTCGGAGAGGCA
1 GGTCGGAGAGGCA
26272601 GGTCGGAGAGGCA
1 GGTCGGAGAGGCA
26272614 TAATGCGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.54, T:0.08
Consensus pattern (13 bp):
GGTCGGAGAGGCA
Found at i:26272918 original size:368 final size:363
Alignment explanation
Indices: 26272314--26273665 Score: 1351
Period size: 367 Copynumber: 3.7 Consensus size: 363
26272304 GGTCTCACTG
* * * *
26272314 CCACAAACCTCGGTCTGACTGGGGCTTAGTCATGGAATG-AGCTCCCTATGCCTAAGCCAACCCA
1 CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGTA-CTTCGTATGCCTAAGCCAACCCA
*** * * * * * *
26272378 CGAAATGGGCGTGCGGGCGCTCAACC-GTCCGGAGAAGCAGAATTCGCAAGCTTGGGATC-GACC
65 CGAAACAAGCGTGCGGGCACTCAACCGGT-CAGAGAGGCAGAATGCGCAAGCTGGGGATCAG-TC
** * * * * * * *
26272441 CAATCCCTCCTGCGTGCTACCGATCTTGTTACCGTAAACTTTGGTCCAGTTCGATCTTAGACTGT
128 TGATCCCCCCTACGTGCTACCGATCCTGCTACCGTAAACTTCGATCCAGTTCGATCTTAGACTGG
* *
26272506 GAATGAACTCCGTATGCTTAGACTGGGGATAAACTCCATATGCCTAAATCAACCCACGAAACGAG
193 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAATCAACCCACGAAACGAG
* *
26272571 CATGCGGGTGCTCAACCGGTCGGAGAGGCAGGTCGGAGAGGCATAATGCGCAAGCCAGGGATCAG
258 CATGCGGGTGCTCAA-C-G-CGGAGAGGC-GG-CGGAGAGGCATAATGCGTAAGTCAGGGATCAG
*
26272636 CCCGATCCCCCTCTACTTGCTACCGATCCCGCTGCCAGTCCTGCTA
318 CCCGATCCCCCTCTACTTGCTACCGATCCCGCTGCCGGTCCTGCTA
* *
26272682 CCACAACCCTCGGTCTGCCTGGGGCTTAGACATCGAATGTAC-TCTGTATGCCTAAGCCAACCCA
1 CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGTACTTC-GTATGCCTAAGCCAACCCA
* * * *
26272746 CGAAACAAGCGTGCGGGCGCTCAGCCGGTCAGAGAGGCAGAATGTGCAAGCTGGGGATCGGTCTG
65 CGAAACAAGCGTGCGGGCACTCAACCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGATCAGTCTG
* * ** * * *
26272811 GTCCCCCCTATGTGCTGTCGATCCTGCTGCCG-AAACCTTCGATCCGGTTCGATCTTCGACTGGG
130 ATCCCCCCTACGTGCTACCGATCCTGCTACCGTAAA-CTTCGATCCAGTTCGATCTTAGACTGGG
* * * **
26272875 AGTGAACTTCGTATGCTTAGAC-GAGGGATGAACTCTGTATGCCTAGGTCAACCCACGAAACGAG
194 AATGAACTCCGTATGCTTAGACTG-GGGATGAACTCCGTATGCCTAAATCAACCCACGAAACGAG
* *
26272939 CATACGGGTGCTCAATCGAACGGAGAGGTCGGCTGGAGAGGC-GAATGCGTAAGTC-GGAGATCA
258 CATGCGGGTGCTCAA-CG--CGGAGAGG-CGGC-GGAGAGGCATAATGCGTAAGTCAGG-GATCA
* * * ** * * *
26273002 GCCTGGTCCCCCTCTACATGCTGTCGATCCCACTGTCGGTCCTACTA
317 GCCCGATCCCCCTCTACTTGCTACCGATCCCGCTGCCGGTCCTGCTA
* ** *
26273049 TCACAACCCTCGGTCTGACTGGGGCTTAGATGTGGAATGTACTTCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGCCAACCCAC
** * * * * * * *
26273114 GAAACGGGCGTGTGAGCACTCAACCGGCCGGAGAGGTAGAATGCGTAAGCTTGGGATCAG-CTCG
66 GAAACAAGCGTGCGGGCACTCAACCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGATCAGTCT-G
* * * * * * *
26273178 ATCCCCCCTACGTGTTACCGATCTTGCTACTGTAAA-TATCGGTCCAGTCCGATCTTAGATTGAG
130 ATCCCCCCTACGTGCTACCGATCCTGCTACCGTAAACT-TCGATCCAGTTCGATCTTAGACTGGG
* * ** *
26273242 AATGAACTCTGTATGCTTAGACTGGGGATGAAGTCCGTATGCCTAAATCAATGCACGAAATGAGC
194 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGC
* * *
26273307 GTGCGGGTGTTCAAC-C-----GGC--CGGAGAGGCATAATACGTAAGTCAGGGATCAGCCCGAT
259 ATGCGGGTGCTCAACGCGGAGAGGCGGCGGAGAGGCATAATGCGTAAGTCAGGGATCAGCCCGAT
* * *
26273364 CCCCTTCTGCTTGCTACCGATCCCGCTGCCGGTCCTGCTG
324 CCCCCTCTACTTGCTACCGATCCCGCTGCCGGTCCTGCTA
* ** * * *
26273404 CCATAACCCTC-GTCT-AGCTGGGGCTTAGATGTGGAATGTACTTCGTATGCCCATGCCAGCCCA
1 CCACAACCCTCGGTCTGA-CTGGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGCCAACCCA
* * * * ** * * *
26273467 TGAAACGAA-TGTGCAGGCACTCAGCCAATCAGAGAGGCAGAATGCGTAAGCCGAGGATCAGTCT
65 CGAAAC-AAGCGTGCGGGCACTCAACCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGATCAGTCT
* * * * * * * * **
26273531 GGTCCCCCCTATGTGTTACCGATCCTGCTGCCGCAACCTTCGATCCGGTTTGATCTTAGACCAGG
129 GATCCCCCCTACGTGCTACCGATCCTGCTACCGTAAACTTCGATCCAGTTCGATCTTAGACTGGG
*
26273596 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
194 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGC
*
26273661 CTGCG
259 ATGCG
26273666 AGCGCTCAGC
Statistics
Matches: 808, Mismatches: 155, Indels: 56
0.79 0.15 0.05
Matches are distributed among these distances:
353 1 0.00
354 211 0.26
355 65 0.08
356 2 0.00
357 1 0.00
358 2 0.00
363 1 0.00
366 6 0.01
367 272 0.34
368 242 0.30
369 5 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (363 bp):
CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGCCAACCCAC
GAAACAAGCGTGCGGGCACTCAACCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGATCAGTCTGA
TCCCCCCTACGTGCTACCGATCCTGCTACCGTAAACTTCGATCCAGTTCGATCTTAGACTGGGAA
TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCAT
GCGGGTGCTCAACGCGGAGAGGCGGCGGAGAGGCATAATGCGTAAGTCAGGGATCAGCCCGATCC
CCCTCTACTTGCTACCGATCCCGCTGCCGGTCCTGCTA
Found at i:26273614 original size:26 final size:26
Alignment explanation
Indices: 26273585--26273637 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26273575 CCGGTTTGAT
26273585 CTTAGACCAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
** *
26273611 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
26273637 C
1 C
26273638 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCGTATG
Found at i:26274628 original size:159 final size:159
Alignment explanation
Indices: 26274333--26274628 Score: 334
Period size: 159 Copynumber: 1.9 Consensus size: 159
26274323 GCTGCGTATG
* * *
26274333 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTTAAC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCGCTGAAC
* * * * *
26274398 CAGCTGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCACCCCTATGTGCTGTCAATCC
66 CAGCCGGAGAGGCAAAATGCACAAGCCAGGGATCGACCCGATCCACCCCTATGTGCTGACAATCC
**
26274463 TGCTGCCGCAACCCTTGATACGGTCTGAT
131 CACTGCCGCAACCCTTGATACGGTCTGAT
* * * *
26274492 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCGCTGAA
* * *
26274556 CC-GACCGGAGAGG-AGTAATGCACAAGCTAGGGATC-AGCCCGAT-C-CCCCTTTGCATGCTGA
65 CCAG-CCGGAGAGGCA-AAATGCACAAGCCAGGGATCGA-CCCGATCCACCCCTATG--TGCTGA
*
26274616 CGATCCCACTGCC
125 CAATCCCACTGCC
26274629 AGTCCTGCCG
Statistics
Matches: 113, Mismatches: 18, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
157 7 0.06
158 5 0.04
159 101 0.89
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTACGGGCGCTGAAC
CAGCCGGAGAGGCAAAATGCACAAGCCAGGGATCGACCCGATCCACCCCTATGTGCTGACAATCC
CACTGCCGCAACCCTTGATACGGTCTGAT
Found at i:26275005 original size:24 final size:24
Alignment explanation
Indices: 26274978--26275032 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
26274968 CCCCTTTGCA
*
26274978 TGCTACCGATCCCACTGCCGGTCC
1 TGCTACCGATCCCACTGCCAGTCC
*
26275002 TGCTATCGATCCCACTGCCAGTCC
1 TGCTACCGATCCCACTGCCAGTCC
26275026 TGCTACC
1 TGCTACC
26275033 ACAACCCTCG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.15, C:0.44, G:0.18, T:0.24
Consensus pattern (24 bp):
TGCTACCGATCCCACTGCCAGTCC
Found at i:26275248 original size:26 final size:26
Alignment explanation
Indices: 26275212--26275263 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
26275202 TCCGGTTCGA
26275212 TCTTAGACTTGGAATGAACTCTGTAT
1 TCTTAGACTTGGAATGAACTCTGTAT
*
26275238 TCTTAGACTTGGGATGAACTCTGTAT
1 TCTTAGACTTGGAATGAACTCTGTAT
26275264 GCCTAAATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
TCTTAGACTTGGAATGAACTCTGTAT
Found at i:26276831 original size:355 final size:356
Alignment explanation
Indices: 26276255--26277245 Score: 1071
Period size: 368 Copynumber: 2.7 Consensus size: 356
26276245 CATGTTGCCA
* * * *
26276255 GTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATG-AGCTCCCCTATGCCTA
1 GTCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGTA-CT-CCATATGCCTA
* * * * * **
26276319 AGCCAACCCATGAAACAAGCGTGCGGGCACGCAGCCGGCCAGAGAGGCAGAATGCGTAAGTGGGG
64 AGCCAACCCATGAAACGAGCGTGCAGGCACTCAGCCGACCAGAGAGGTAGAATGCG-AAGCCGGG
* * * * * * * ** * * *
26276384 GGTCGGCCCGATCCCCCTTGCGAGCAGTTGATCCTGTTGCCGCAACCCTCGGTCCGA-TCTGATC
128 GATCGGCTCGGTCCCCCCTACGTGCTGCCGATCCTGCTGTCGCAACCCTCGATCCGATTC-GATC
*
26276448 TTAGACTGGGAATGAACTCTGCATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCA
192 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCA
* * * *
26276513 CTAAATGAGCATGCAGGCGCTCA-GT-CGATCGGAGAGGCATAATGCA-CAAGTCGGGGATCAAC
257 CGAAACGAGCATGCAGGCGCTCACGTGCGATCGGAGAGGCAAAATG-AGAAAGTCGGGGATCAAC
* *
26276575 CCGATCCCCCTCTACGTGCTGTCGATCCCGCTG-TCG
321 CCGATCCCCCTCTACGTGCTGCCGATCCCACTGCT-G
* * **
26276611 GTCCTGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGTACTCTGTATGCCTAAG
1 GTCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGTACTCCATATGCCTAAG
* * * * *
26276676 CAAACCCATGAAACGAGCATGCAGACGCTCAGCCGACCGGAGAGGTAGAATGCGCAAG-CGGGGA
66 CCAACCCATGAAACGAGCGTGCAGGCACTCAGCCGACCAGAGAGGTAGAATGCG-AAGCCGGGGA
* * *
26276740 TCGGCTCGGTCCCCCCCTACGTGCTGCCGATCCTGCTATCGCAACCTTCAATCCGATTCGATCTT
130 TCGGCTCGGT-CCCCCCTACGTGCTGCCGATCCTGCTGTCGCAACCCTCGATCCGATTCGATCTT
* * * * *
26276805 AGGCTGGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCCGCG
194 AGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACG
* * * *
26276870 AGACGAGCGTGTAGGCGCTCATCCGGTCAGAGAGGCCGATCGGAGAGGTAAAATGAGAAAGTCGG
259 AAACGAGCATGCAGGCGCTCA--C-GT-------G-CGATCGGAGAGGCAAAATGAGAAAGTCGG
* * * *** ** *
26276935 GGATCAGCCTGGTCCTTTTCTGTGTGCTGCCGATCTCACTGCTG
313 GGATCAACCCGATCCCCCTCTACGTGCTGCCGATCCCACTGCTG
* * *
26276979 ATCCTACTGCCACAACCCTCGGTCTGACTGGGGCTTAGACGTGGAATGTACTCCATATGCCTAAG
1 GTCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGTACTCCATATGCCTAAG
* * * *
26277044 CCAACCCATGAAACGGGCGTGAAGGCACTCAACCGACCAGAGAGGTAGAATGAGATAGCCGGGGA
66 CCAACCCATGAAACGAGCGTGCAGGCACTCAGCCGACCAGAGAGGTAGAATGCGA-AGCCGGGGA
* * * * *
26277109 TCGGCTCAG-CCCCCCTACATGCTGCCGATCATGCTGTCGCAACCCTCGATCTGGTTCGATCTTA
130 TCGGCTCGGTCCCCCCTACGTGCTGCCGATCCTGCTGTCGCAACCCTCGATCCGATTCGATCTTA
* *
26277173 GACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTTCGTATGCCTAAGTCAACCCACG
195 GACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAAC-TTCGTATGCCTAAGTCAACCCACG
26277238 AAACGAGC
259 AAACGAGC
26277246 GTACGGGCGC
Statistics
Matches: 523, Mismatches: 91, Indels: 30
0.81 0.14 0.05
Matches are distributed among these distances:
354 12 0.02
355 172 0.33
356 47 0.09
357 1 0.00
359 2 0.00
367 86 0.16
368 188 0.36
369 15 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (356 bp):
GTCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGTACTCCATATGCCTAAG
CCAACCCATGAAACGAGCGTGCAGGCACTCAGCCGACCAGAGAGGTAGAATGCGAAGCCGGGGAT
CGGCTCGGTCCCCCCTACGTGCTGCCGATCCTGCTGTCGCAACCCTCGATCCGATTCGATCTTAG
ACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAA
ACGAGCATGCAGGCGCTCACGTGCGATCGGAGAGGCAAAATGAGAAAGTCGGGGATCAACCCGAT
CCCCCTCTACGTGCTGCCGATCCCACTGCTG
Found at i:26277210 original size:26 final size:27
Alignment explanation
Indices: 26277169--26277222 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
26277159 CTGGTTCGAT
26277169 CTTAGACTAGGAATGAAC-TCCGTATG
1 CTTAGACTAGGAATGAACTTCCGTATG
* * *
26277195 CTTAGACTGGGGATGAACTTTCGTATG
1 CTTAGACTAGGAATGAACTTCCGTATG
26277222 C
1 C
26277223 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (27 bp):
CTTAGACTAGGAATGAACTTCCGTATG
Found at i:26278262 original size:26 final size:26
Alignment explanation
Indices: 26278226--26278278 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26278216 GTAGTTCGAT
26278226 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
26278252 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26278278 C
1 C
26278279 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26278405 original size:12 final size:12
Alignment explanation
Indices: 26278377--26278408 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
26278367 CATGCTGTCG
*
26278377 ATCCCGCTGCCA
1 ATCCTGCTGCCA
26278389 ATCCTGCTGCCA
1 ATCCTGCTGCCA
26278401 ATCCTGCT
1 ATCCTGCT
26278409 ACCACAACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.16, C:0.44, G:0.16, T:0.25
Consensus pattern (12 bp):
ATCCTGCTGCCA
Found at i:26278780 original size:26 final size:26
Alignment explanation
Indices: 26278751--26278803 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26278741 CAGGTCCGAT
26278751 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26278777 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26278803 C
1 C
26278804 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26279160 original size:26 final size:26
Alignment explanation
Indices: 26279119--26279171 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26279109 CCGACCTGAT
26279119 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
26279145 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
26279171 C
1 C
26279172 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:26279871 original size:26 final size:26
Alignment explanation
Indices: 26279842--26279894 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26279832 GGCTCAAAAT
*
26279842 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
26279868 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26279894 C
1 C
26279895 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26280386 original size:26 final size:26
Alignment explanation
Indices: 26280357--26280409 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26280347 GGCTCAAAAT
** *
26280357 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
26280383 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
26280409 C
1 C
26280410 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:26280728 original size:515 final size:514
Alignment explanation
Indices: 26279813--26280763 Score: 1423
Period size: 515 Copynumber: 1.8 Consensus size: 514
26279803 TACAAGTCCA
* *
26279813 AGCCCAGCATGTGCATCGTGGCTCAAAATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACATG
1 AGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACACG
26279878 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGA
66 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGA
* * * * * *
26279943 GGCAGAATGCGCAAGCCGAGGATTGACCCAGTCCCCCCCAGTGTGCTGTCGATCCTGCTGCCGCA
131 GGCAAAATGCGCAAGCAGAGGATCGACCCAGTCCCCCCCA-TGAGCTGTCGATCCTACTACCGCA
* * * *
26280008 ACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAATTCTATATGTATAAGTCAACCCATGAATC
195 ACCCTCGATTTGGTCCGATCTTAGACTGGGAATGAATTCTATATGCATAAGTCAACCCATGAAAC
* * * * * * *
26280073 GAGTGTACGGGCGCTGAACCGGTCGAAGAGGTATAATGCGTAAGTCGGGGATCAGCTCGATCCCC
260 GAGCGTACGGGCACTGAACCAGCCGAAGAGGCATAATGCATAACTCGGGGATCAGCTCGATCCCC
* * * * *
26280138 CTTGCGTGCTGCGGGTCCCACTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAGC
325 CTTACGTGCTACCGGTCCCACTGCCACAACCCTCGATCTGACTAGGGCTTAGACATGGAATGAGC
* *
26280203 TCTCTATGCCTAAGCCAACCTATGAAACGGGCGTGCAGGCGCTCAGGCGATGCTCTGGCGACGCT
390 TCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAGGCGATGCTCTGGCGACGCT
26280268 CCGACGATGCTCCGACAATGGTGCCCCGAGCAAAAAAAATGCGGCACCAACACATGCTTG
455 CCGACGATGCTCCGACAATGGTGCCCCGAGCAAAAAAAATGCGGCACCAACACATGCTTG
26280328 AGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACACG
1 AGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACACG
26280393 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAAG-CGGTCGGAG
66 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC-AGCCGGTCGGAG
26280457 AGGCAAAATGCGCAAGTCAG-GGATCGACCC-GATCCCCCCTC-TGAGCTGTCGATCCTACTACC
130 AGGCAAAATGCGCAAG-CAGAGGATCGACCCAG-TCCCCCC-CATGAGCTGTCGATCCTACTACC
* *
26280519 GTAACCCTCGATTTGGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCATAAGTCAACCCATG
192 GCAACCCTCGATTTGGTCCGATCTTAGACTGGGAATGAA-TTCTATATGCATAAGTCAACCCATG
* * *
26280583 AAACGAGCGTTCGGGCACT-AGGCTAGCCGAAGAGGCATAATGCATAAC-CTGGGGATCAGC-CT
256 AAACGAGCGTACGGGCACTGA-ACCAGCCGAAGAGGCATAATGCATAACTC-GGGGATCAGCTC-
* ** * *
26280645 GATCCCTCTCTACGTGCTACCGGTCCTGCTGCCACAACCCTCGGTCTGACTAGGGCTTAGACTTG
318 GATCCCCCT-TACGTGCTACCGGTCCCACTGCCACAACCCTCGATCTGACTAGGGCTTAGACATG
*
26280710 GAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
382 GAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAG
26280764 CCGGCCAGAG
Statistics
Matches: 390, Mismatches: 37, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
513 3 0.01
514 127 0.33
515 255 0.65
516 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (514 bp):
AGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACACG
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGA
GGCAAAATGCGCAAGCAGAGGATCGACCCAGTCCCCCCCATGAGCTGTCGATCCTACTACCGCAA
CCCTCGATTTGGTCCGATCTTAGACTGGGAATGAATTCTATATGCATAAGTCAACCCATGAAACG
AGCGTACGGGCACTGAACCAGCCGAAGAGGCATAATGCATAACTCGGGGATCAGCTCGATCCCCC
TTACGTGCTACCGGTCCCACTGCCACAACCCTCGATCTGACTAGGGCTTAGACATGGAATGAGCT
CCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCTCAGGCGATGCTCTGGCGACGCTC
CGACGATGCTCCGACAATGGTGCCCCGAGCAAAAAAAATGCGGCACCAACACATGCTTG
Found at i:26280894 original size:26 final size:26
Alignment explanation
Indices: 26280858--26280910 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26280848 CCGATCCGAT
*
26280858 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
26280884 CTTAGGCTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
26280910 C
1 C
26280911 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:26281249 original size:26 final size:26
Alignment explanation
Indices: 26281213--26281265 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26281203 CTGGTCTGAT
* *
26281213 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26281239 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26281265 C
1 C
26281266 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26281398 original size:182 final size:183
Alignment explanation
Indices: 26281054--26281487 Score: 541
Period size: 182 Copynumber: 2.4 Consensus size: 183
26281044 TCCAATTGGG
* * * * *
26281054 GCTTAGA-TGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTTA
1 GCTTAGACTG-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * * *
26281118 GCCGGTCGAAGAGGTAGAATGCGTAAGCTGGGGATTGGCCCGGTCCCCCCTGCGTGCTATCGATC
65 -TCGGTAGAAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCCCCCTACATGCTATCGATC
* * * * * * * *
26281183 CTGCTGCCCCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAATTTCGTAT
129 CTGCTACCCCAACCCTTCATCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
* *
26281238 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAT
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAT
* * * *
26281303 CGGCTAG-AG-GGCAGAATGGGCAAGCCGGGGATTGACTCGGTCCCCCTTACATGCTGTCGATCC
66 CGG-TAGAAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCCCCCTACATGCTATCGATCC
*
26281366 TGCTACCGCAACCCTTCATCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
130 TGCTACCCCAACCCTTCATCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
* *
26281420 GCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCGA
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTC-A
26281485 TCG
65 TCG
26281488 ACCAGAGAGG
Statistics
Matches: 215, Mismatches: 32, Indels: 7
0.85 0.13 0.03
Matches are distributed among these distances:
182 148 0.69
183 9 0.04
184 56 0.26
185 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (183 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAT
CGGTAGAAGAGGCAGAATGCGCAAGCCGGGGATTGACCCGGTCCCCCCTACATGCTATCGATCCT
GCTACCCCAACCCTTCATCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:26282131 original size:26 final size:26
Alignment explanation
Indices: 26282102--26282157 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
26282092 GGCTCAAAAT
*
26282102 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
26282128 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26282154 CTTA
1 CTTA
26282158 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26282992 original size:26 final size:26
Alignment explanation
Indices: 26282956--26283008 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26282946 CTGGTCTGAT
26282956 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26282982 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26283008 C
1 C
26283009 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26283242 original size:355 final size:359
Alignment explanation
Indices: 26282421--26283401 Score: 1226
Period size: 355 Copynumber: 2.7 Consensus size: 359
26282411 ACTCTCAGTT
** * *
26282421 CGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCG
1 CGACTGGGGCTTAGATGTGGAATGTA-CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCG
* * * * * * *
26282485 GGCGGTCAGCCGACCGGAGAGGTAAAATGCGCAAGCCGGGGATC-GACTCGGTCCCCCCTGCATG
65 GGTGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CTCGAT-CCCCCTGCGTG
* * * *
26282549 CTACCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCT-ATCTTAAACTGGGAATGAACTCCGTAT
128 CTACCGATCCTGCT-ACGCAACCCTCGATCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTAT
** *
26282613 GCTTAGACTAAGGATGAACTCCGTGTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAG
191 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAG
* *
26282678 CTAACCGGAGAGGCCGGTTGGAGAGGCATAATACACAAGCCAAGGATCAGCCCGGTTCCCCTCAG
256 CT-A-C---G-GGCCGGTT-GAGAGGCATAATACACAAGCCAAGGATCAGCCCGATCCCCCTCAG
* * *** * *
26282743 TGTGCTGCCAATCCCGCTGCTGGTCCTGCTACGATAACCCTCGGTC
314 CGTGCTACCAATCCCGCTGCCAATCCTACTACCATAACCCTCGGTC
* * *
26282789 TGACTGGGGCTTACATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGG
1 CGACTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG
* * *
26282854 GTGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCCCGATCCCCCATGCGTGCC
66 GTGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGATCCCCC-TGCGTGCT
*
26282919 ACCGATCCTGCTACAGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
130 ACCGATCCTGCTAC-GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
26282984 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGTTTAG-T-
194 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCTA
* * * * * *
26283047 C-GGTC-G-T-AGAGGCATAATGCATAAGTCGAGGATCAGCCCGATCCCCCTCTA-CGTGCTATC
259 CGGGCCGGTTGAGAGGCATAATACACAAGCCAAGGATCAGCCCGATCCCCCTC-AGCGTGCTACC
26283107 AATCCCGCTGCCAATCCTACTACCATAACCCTCGGTC
323 AATCCCGCTGCCAATCCTACTACCATAACCCTCGGTC
* *
26283144 CGACTGTGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCTTGCGG
1 CGACTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG
* * * *
26283209 GTGCTTAGTCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGATCATCTCGATCCCGCCTGCGTGCT
66 GTGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGATCCC-CCTGCGTGCT
** * * *
26283274 GTCGATCCAGCCACCGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
130 ACCGATCCTGCTA-CGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* *
26283339 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGCTCAGC
194 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
26283402 CGACCAGAGA
Statistics
Matches: 536, Mismatches: 68, Indels: 30
0.85 0.11 0.05
Matches are distributed among these distances:
355 302 0.56
356 4 0.01
357 1 0.00
358 1 0.00
359 3 0.01
364 1 0.00
367 9 0.02
368 213 0.40
369 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (359 bp):
CGACTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG
GTGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCTCGATCCCCCTGCGTGCTA
CCGATCCTGCTACGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCTACG
GGCCGGTTGAGAGGCATAATACACAAGCCAAGGATCAGCCCGATCCCCCTCAGCGTGCTACCAAT
CCCGCTGCCAATCCTACTACCATAACCCTCGGTC
Found at i:26283340 original size:26 final size:26
Alignment explanation
Indices: 26283311--26283363 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26283301 CCGGTCTGAT
26283311 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26283337 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26283363 C
1 C
26283364 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26285210 original size:26 final size:26
Alignment explanation
Indices: 26285181--26285233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26285171 CCGATCTGAT
26285181 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
26285207 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
26285233 C
1 C
26285234 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:26286345 original size:158 final size:158
Alignment explanation
Indices: 26285928--26286357 Score: 427
Period size: 159 Copynumber: 2.7 Consensus size: 158
26285918 AGCTCCGTAT
* * * *
26285928 GCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAG
** ** * *
26285993 -TCGGTCGGAGAGGCAGAATGTGCAAGCTGGGGATCAACCCGATCCCCCCCTGCGTGCTGTCGAT
66 CT-GACCGGAGAGGCAGAATGTGCAAGCT-GGGATCGGCCCGATCCCCCCCTACGTGCTATCGAT
** ** * *
26286057 CCTGCTGCTGCAACCCTCAGTCTGGTCCGA
129 CCCACTGCCCCAACCCTCAGTCTCGACCGA
* * * ** *
26286087 TCTTATAC-TAGGAATGAACTCCGTATGCATAAGTTAACCCATGAAACGAGTGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCA
* * * * ** *
26286151 GCCGACCGAAGAGGCATAGTGCACAAGCTGAGGATCGGCCCGA-CCCCCCTCTACGTGCTATCGG
65 GCTGACCGGAGAGGCAGAATGTGCAAGCTG-GGATCGGCCCGATCCCCCC-CTACGTGCTATCGA
* * *
26286215 TCCCACTGCCCCAACCCTCGGT-TCGACTGG
128 TCCCACTGCCCCAACCCTCAGTCTCGACCGA
** * * *
26286245 GCTTAGACATGGAATGGGCTCCCTATGCCTAAGCCAACCCATAAAACGGGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAG
* *
26286310 CTGACCGGAGAGGCAGAATGTGCAAGTTGGTGATCGGCCCGGTCCCCC
66 CTGACCGGAGAGGCAGAATGTGCAAGCTGG-GATCGGCCCGATCCCCC
26286358 ATGCGTGCTG
Statistics
Matches: 213, Mismatches: 51, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 96 0.45
159 116 0.54
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAG
CTGACCGGAGAGGCAGAATGTGCAAGCTGGGATCGGCCCGATCCCCCCCTACGTGCTATCGATCC
CACTGCCCCAACCCTCAGTCTCGACCGA
Found at i:26286408 original size:158 final size:156
Alignment explanation
Indices: 26285929--26286430 Score: 449
Period size: 158 Copynumber: 3.2 Consensus size: 156
26285919 GCTCCGTATG
* * * *
26285929 CTTAGAC-ATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGTGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAG
** **
26285993 -TCGGTCGGAGAGGCAGAATGTGCAAGCTGGGGATCAACCCGATCCCCCCCTGCGTGCTGTCGAT
65 CT-GACCGGAGAGGCAGAATGTGCAAGCT-GGGATCGGCCCGAT-CCCCCCTGCGTGCTGTCGAT
*
26286057 CCTGCTGCTGCAACCCTC-AGTCTGGTCC-GAT
127 CCTGCTGC-GCAACCCTCGA-TCTAG-CCTGAT
* * ** *
26286088 CTTATACTAGGAATGAACTCCGTATGCATAAGTTAACCCATGAAACGAGTGTGCGGGCACTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAGC
* * * * ** * * * *
26286153 CGACCGAAGAGGCATAGTGCACAAGCTGAGGATCGGCCCGACCCCCCTCTACGTGCTATCGGTCC
66 TGACCGGAGAGGCAGAATGTGCAAGCTG-GGATCGGCCCGATCCCCC-CTGCGTGCTGTCGATCC
** * * * * **
26286218 CACTGCCCCAACCCTCGGT-TCGACTGGG
129 TGCTG-CGCAACCCTCGATCTAGCCTGAT
** * * *
26286246 CTTAGAC-ATGGAATGGGCTCCCTATGCCTAAGCCAACCCATAAAACGGGTGTGCGGGCACTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAG
* * * *
26286310 CTGACCGGAGAGGCAGAATGTGCAAGTTGGTGATCGGCCCGGTCCCCCATGCGTGCTGTCAATCC
65 CTGACCGGAGAGGCAGAATGTGCAAGCTGG-GATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
*
26286375 TGTTGTCGCAACCCTCGATCTAGCCTGAT
129 TGCTG-CGCAACCCTCGATCTAGCCTGAT
* *
26286404 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTAGGAATGAACTCCGTATGC
26286431 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 69, Indels: 23
0.74 0.19 0.06
Matches are distributed among these distances:
157 28 0.11
158 125 0.48
159 108 0.41
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (156 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAGC
TGACCGGAGAGGCAGAATGTGCAAGCTGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTG
CTGCGCAACCCTCGATCTAGCCTGAT
Found at i:26286440 original size:26 final size:26
Alignment explanation
Indices: 26286404--26286456 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26286394 CTAGCCTGAT
26286404 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26286430 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26286456 C
1 C
26286457 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26286801 original size:26 final size:26
Alignment explanation
Indices: 26286772--26286824 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26286762 CCGGTCTGAT
* *
26286772 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
26286798 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
26286824 C
1 C
26286825 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:26286930 original size:368 final size:365
Alignment explanation
Indices: 26286220--26287940 Score: 1641
Period size: 355 Copynumber: 4.8 Consensus size: 365
26286210 ATCGGTCCCA
* * * * ** *
26286220 CTGCCCCAACCCTCGGTTCGACT-GGGCTTAGACATGGAATGGGCTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
** * * ** * ** * * *
26286284 CATAAAACGGGTGTGCGGGCACTCAGCTGACCGGAGAGGCAGAATGTGCAAGTTGGTGATCGGCC
66 CACGAAACGAGCGTGCGGGTGCTCAGC-CACCGGAGAGGCAGAATGCACAAGCTGGGGATCAGCC
* * * * * ** *
26286349 CGGTCCCCCATGCGTGCTGTCAATCCTGTTGTCGCAACCCTCGATCTAGCCTGATCTTAGACTGG
130 AGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTGG
*
26286414 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAG
195 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAG
* * ** * * *
26286479 CGTGCGAGCGCTCAGCCGACCAAAAAGGCCGGCCGAAGAGGCATAATGCGCAAG-CAGTGATCAG
260 CGTGCGGGCGCTCAGCCGATC-GGAAGGCCGACCGAAGAGGCATAATACG-AAGCCAGGGATCAG
* * * *
26286543 CCCATTCCCCCTCTACGTGCTGTCGATCCCGCTACCGGTCATG
323 CCCAGTCCCCATCTACGTGCTGTCGATCCCGCTGCCGGTCTTG
* * * * *
26286586 CTGCCACAACCCTCAGTCTGACTGGGGATTAGATGTGGAATGTACTCCATATGCCTCAGCCAACC
1 CTGCCACAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
* *
26286651 CACAAAACGAGTGTGCGGGTGCTCAGCCACCCGGAGAGGCAGAATGCACAAGCTGAGGGATCAGC
66 CACGAAACGAGCGTGCGGGTGCTCAGCCA-CCGGAGAGGCAGAATGCACAAGCTG-GGGATCAGC
** * *
26286716 CAGGTCCCCCCTGCGTGCTACCGATCCTGCTATCGTAACCCTCGATCCGGTCTGATCTTAGATTG
129 CAGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTG
* * ***
26286781 GGAATGAACTCCGTATGCTTAGACTGGGGATAAACTCTGTATGCCTAAGTCAA-CCATGGAACGA
194 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA
* * * * * * *
26286845 GCGTGCGGGTGCTCAGCCGGTCGGAGAGGCCAATCAAAGGGGCATAATACGTAAGCCAGGGATTA
259 GCGTGCGGGCGCTCAGCCGATCGGA-AGGCCGACCGAAGAGGCATAATACG-AAGCCAGGGATCA
* * * * *
26286910 GCTCGGTCCCCATCTACGTGCTGTCGATCCAGCTGTCGGTCTTA
322 GCCCAGTCCCCATCTACGTGCTGTCGATCCCGCTGCCGGTCTTG
* * *
26286954 CTACCACAACCCTCAGTCCGACTGGGGCTTACACGTGGAATGTACTCTGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
* * ** * *
26287019 CACGAAACGAGCATGTGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCATAAGCTGGGTATC-GAC
66 CACGAAACGAGCGTGCGGGTGCTCAGCC-ACCGGAGAGGCAGAATGCACAAGCTGGGGATCAG-C
* * * * * * ** *
26287083 CCGGTCCCTCCTGTGTGCTATCGATTCTGTTGTCGTAACCCTCGATTTGGTCTAATCTTAGACTG
129 CAGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTG
* * * * * *
26287148 GGAATGAACTTCGTATGCTTAGACTGGGGATAAACTCCGTATTCCTAAGTTAACCCACGACACGA
194 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA
* * * *
26287213 GCGTG-TGG-G--CA--C--TC---A-GCCGACCGAAGAGACATAATGCGGAAGCCAAGGATCAG
259 GCGTGCGGGCGCTCAGCCGATCGGAAGGCCGACCGAAGAGGCATAATAC-GAAGCCAGGGATCAG
* * * * * * *
26287266 CCCAATCCCCATC-GCGTGCTATCGATCCCACTGTCGATCCTG
323 CCCAGTCCCCATCTACGTGCTGTCGATCCCGCTGCCGGTCTTG
* * * *
26287308 TTACCACAACCCTCAGTCCGATTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
* * * * * * *** * ** *
26287373 TAGGAGATGAGCATACGGGTGCTCAGTCGGTCGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCC
66 CACGAAACGAGCGTGCGGGTGCTCAG-CCACCGGAGAGGCAGAATGCACAAGCTGGGGATCAG-C
* * *
26287438 CA-GTCCCCCCCTGCGTGCTGTCGATCCTGCTGTTGTAACCCTCAATCCGGTCCGATCTTAGACT
129 CAGGT-CCCCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCCGGTCTGATCTTAGACT
* *
26287502 GGGGATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
193 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACG
* * * * * * *
26287567 AGCGTGCGAGTGCTTAACCGATCGGATAGG-C-A---TA-ATGC-----AC-AAGCCGGGGATCA
258 AGCGTGCGGGCGCTCAGCCGATCGGA-AGGCCGACCGAAGAGGCATAATACGAAGCCAGGGATCA
* * * * * * * * *
26287620 GCCCGGTCCCCCTTTGCGTGCTGCCAATCTCGTTGCCAGTCTTG
322 GCCCAGTCCCCATCTACGTGCTGTCGATCCCGCTGCCGGTCTTG
* * *
26287664 CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
* * * * * *
26287729 CATGAAATGAGCGTGCGGGTGCTCAGTCGACCGGAGAGGCAGAATGCTCAAGCCGGGGATCAGTC
66 CACGAAACGAGCGTGCGGGTGCTCAG-CCACCGGAGAGGCAGAATGCACAAGCTGGGGATCAGCC
* * ** ** *
26287794 TGATCCCCCCTGCGTGCTG-CTGATCCTGCTACCGTAACCCTCGATCCAATCCGATCTTAGACTG
130 AGGTCCCCCCTGCGTGCTGTC-GATCCTGCTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTG
* * * *
26287858 GGAAAGAACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCTTAAGTCAACCCACAAAACGA
194 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA
26287923 GCGTGCGGGCGCTCAGCC
259 GCGTGCGGGCGCTCAGCC
26287941 AACCAGAGAG
Statistics
Matches: 1118, Mismatches: 209, Indels: 67
0.80 0.15 0.05
Matches are distributed among these distances:
354 136 0.12
355 302 0.27
356 132 0.12
357 2 0.00
359 1 0.00
360 2 0.00
361 1 0.00
362 3 0.00
363 3 0.00
364 2 0.00
366 24 0.02
367 240 0.21
368 270 0.24
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (365 bp):
CTGCCACAACCCTCAGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTGCGGGTGCTCAGCCACCGGAGAGGCAGAATGCACAAGCTGGGGATCAGCCA
GGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGC
GTGCGGGCGCTCAGCCGATCGGAAGGCCGACCGAAGAGGCATAATACGAAGCCAGGGATCAGCCC
AGTCCCCATCTACGTGCTGTCGATCCCGCTGCCGGTCTTG
Found at i:26287175 original size:26 final size:26
Alignment explanation
Indices: 26287139--26287189 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26287129 TTGGTCTAAT
* *
26287139 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
26287165 CTTAGACTGGGGATAAACTCCGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
26287190 TCCTAAGTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:26287523 original size:26 final size:26
Alignment explanation
Indices: 26287494--26287546 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
26287484 CCGGTCCGAT
26287494 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
26287520 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
26287546 C
1 C
26287547 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:26287885 original size:26 final size:26
Alignment explanation
Indices: 26287849--26287904 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
26287839 CCAATCCGAT
26287849 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCTGTATG
* *
26287875 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCTGTATG
26287901 CTTA
1 CTTA
26287905 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCTGTATG
Found at i:26289110 original size:26 final size:26
Alignment explanation
Indices: 26289060--26289110 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
26289050 CGATCCGATC
* **
26289060 TTAGATTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
26289086 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
26289111 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:26289798 original size:368 final size:365
Alignment explanation
Indices: 26288876--26289875 Score: 1087
Period size: 367 Copynumber: 2.7 Consensus size: 365
26288866 AGATCCCATT
* * *
26288876 ACCACAACCCTCGGCCTGGCTAGGGCTTAGACATGGAATG-AGCTTCCTATGCCTAAGCTAACCC
1 ACCACAACCCTCGGCC-GGCTGGGGCTTAGACATGGAATGTA-CTTCGTATGCCTAAGCCAACCC
* ** * ** * * * * * *
26288940 ACGAAATGAGCATGCGGGAGCTCAACCAACCGAAAAGGCAAAATGCACATGCCGGGGATCAACCT
64 ACGAAACGAGTGTACGGGAGCTCATTCGATCGGAGAGGCAAAATGCGCAAGCC-GGGATCAACCT
* * * * *
26289005 AGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATTCGATCCGATCTTAGATTGGG
128 GGTCCCCCCTGCGTGCTATCGATCCTGCTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGG
* * *
26289070 AATGAACTCTGTATGGTTAGACTGGGGATGAACTCCATATGCCTAAGTCAAGCCATGAAACGAGC
193 AATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* * ***
26289135 GTGCGGGCGCTCAGCCAACTGGAGAAGCCGATCGAAGAGGCATAATATGCAAGTCGGGGATCAGC
258 GTGCGGCCGCTCAGCCAACTGGAGAAGCCGATCGAAGAGGCATAATACGCAAGTCAAAGATCAGC
* * *
26289200 CCGGTCCCCTCTGCGTGCTGTCGATCCCGCTGCCGATCCTACC
323 CCGATCCCCTCTGCGTGCTGTCGAACCCGCAGCCGATCCTACC
* * * *
26289243 ACCACAACCCTCGGCCCGACTGGGGGTTAAACGTGGAATGTACTTCGTATGCCTAAGCCAACCCA
1 ACCACAACCCTCGG-CCGGCTGGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGCCAACCCA
* * * * * * * *
26289308 CGGAACGAGTGTACAGGCGCTCAGTTGGCT-GGAGAGGCAAAATGTGCAAGCTGGTGATCCATCC
65 CGAAACGAGTGTACGGGAGCTCA-TTCGATCGGAGAGGCAAAATGCGCAAGCCGG-GAT-CAACC
* * * * *
26289372 -GGTCCCTCCTGCATGCTA-CTGATCCTGCTACCGTAACCCTCGATCCGATCCGATCTTAGACAG
127 TGGTCCCCCCTGCGTGCTATC-GATCCTGCTATCGCAACCCTCGATCCGATCCGATCTTAGACTG
* * *
26289435 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGCAAGCCTAAGTCAACCCATGAAACGA
191 GGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
* ** * * * * *
26289500 GCGTGCGGCCGCTCAGTC-GGTCGGAGAGGCTGGCTGGAA-AGGCATAATGCGCAAGTCAAAGAT
256 GCGTGCGGCCGCTCAGCCAACT-GGAGAAGC-CGATCGAAGAGGCATAATACGCAAGTCAAAGAT
* * * *
26289563 CAGCCCGATCCCCTTCTGCGTGCTG-CTGAACCCGCAGCTGGTCCTGCT
319 CAGCCCGATCCCC-TCTGCGTGCTGTC-GAACCCGCAGCCGATCCTACC
* *
26289611 GCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGCGAACCCA
1 ACCACAACCCTCGG-CCGGCTGGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGCCAACCCA
* * * * * **
26289676 TGAAACGAGTGTACGGGTGCTCATTCGATCGGAGAGGCAGAATGCGTAACCCGAGGATCGGCCTG
65 CGAAACGAGTGTACGGGAGCTCATTCGATCGGAGAGGCAAAATGCGCAAGCCG-GGATCAACCTG
** * * ** * **
26289741 GTCCCCCCTATGTGTTATCGATCCTGCTATCACAACTTTCGATCCGGTTTGATCTTAGACTGGGA
129 GTCCCCCCTGCGTGCTATCGATCCTGCTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGGA
*
26289806 ATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCG
194 ATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
26289871 TGCGG
259 TGCGG
26289876 GCACTCAACC
Statistics
Matches: 518, Mismatches: 101, Indels: 27
0.80 0.16 0.04
Matches are distributed among these distances:
366 4 0.01
367 260 0.50
368 252 0.49
369 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (365 bp):
ACCACAACCCTCGGCCGGCTGGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGCCAACCCAC
GAAACGAGTGTACGGGAGCTCATTCGATCGGAGAGGCAAAATGCGCAAGCCGGGATCAACCTGGT
CCCCCCTGCGTGCTATCGATCCTGCTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAAT
GAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
CGGCCGCTCAGCCAACTGGAGAAGCCGATCGAAGAGGCATAATACGCAAGTCAAAGATCAGCCCG
ATCCCCTCTGCGTGCTGTCGAACCCGCAGCCGATCCTACC
Found at i:26289830 original size:26 final size:26
Alignment explanation
Indices: 26289794--26289846 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26289784 CCGGTTTGAT
*
26289794 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26289820 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26289846 C
1 C
26289847 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26289897 original size:368 final size:365
Alignment explanation
Indices: 26288876--26289897 Score: 1102
Period size: 368 Copynumber: 2.8 Consensus size: 365
26288866 AGATCCCATT
* * *
26288876 ACCACAACCCTCGGCCTGGCTAGGGCTTAGACATGGAATG-AGCTTCCTATGCCTAAGCTAACCC
1 ACCACAACCCTCGGCC-GGCTGGGGCTTAGACATGGAATGTA-CTTCGTATGCCTAAGCCAACCC
* ** * ** * * * * * *
26288940 ACGAAATGAGCATGCGGGAGCTCAACCAACCGAAAAGGCAAAATGCACATGCCGGGGATCAACCT
64 ACGAAACGAGTGTACGGGAGCTCATTCGATCGGAGAGGCAAAATGCGCAAGCC-GGGATCAACCT
* * * * *
26289005 AGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATTCGATCCGATCTTAGATTGGG
128 GGTCCCCCCTGCGTGCTATCGATCCTGCTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGG
* * *
26289070 AATGAACTCTGTATGGTTAGACTGGGGATGAACTCCATATGCCTAAGTCAAGCCATGAAACGAGC
193 AATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* * * * ***
26289135 GTGCGGGCGCTCAGCCAACTGGAGAAGCCGATCGAAGAGGCATAATATGCAAGTCGGGGATCAGC
258 GTGCGGGCGCTCAGCCGACCGGAGAGGCCGATCGAAGAGGCATAATACGCAAGTCAAAGATCAGC
* * *
26289200 CCGGTCCCCTCTGCGTGCTGTCGATCCCGCTGCCGATCCTACC
323 CCGATCCCCTCTGCGTGCTGTCGAACCCGCAGCCGATCCTACC
* * * *
26289243 ACCACAACCCTCGGCCCGACTGGGGGTTAAACGTGGAATGTACTTCGTATGCCTAAGCCAACCCA
1 ACCACAACCCTCGG-CCGGCTGGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGCCAACCCA
* * * * * * * *
26289308 CGGAACGAGTGTACAGGCGCTCAGTTGGCT-GGAGAGGCAAAATGTGCAAGCTGGTGATCCATCC
65 CGAAACGAGTGTACGGGAGCTCA-TTCGATCGGAGAGGCAAAATGCGCAAGCCGG-GAT-CAACC
* * * * *
26289372 -GGTCCCTCCTGCATGCTA-CTGATCCTGCTACCGTAACCCTCGATCCGATCCGATCTTAGACAG
127 TGGTCCCCCCTGCGTGCTATC-GATCCTGCTATCGCAACCCTCGATCCGATCCGATCTTAGACTG
* * *
26289435 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGCAAGCCTAAGTCAACCCATGAAACGA
191 GGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
* * ** * * * *
26289500 GCGTGCGGCCGCTCAGTCGGTCGGAGAGGCTGGCTGGAA-AGGCATAATGCGCAAGTCAAAGATC
256 GCGTGCGGGCGCTCAGCCGACCGGAGAGGC-CGATCGAAGAGGCATAATACGCAAGTCAAAGATC
* * * *
26289564 AGCCCGATCCCCTTCTGCGTGCTG-CTGAACCCGCAGCTGGTCCTGCT
320 AGCCCGATCCCC-TCTGCGTGCTGTC-GAACCCGCAGCCGATCCTACC
* *
26289611 GCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGCGAACCCA
1 ACCACAACCCTCGG-CCGGCTGGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGCCAACCCA
* * * * * **
26289676 TGAAACGAGTGTACGGGTGCTCATTCGATCGGAGAGGCAGAATGCGTAACCCGAGGATCGGCCTG
65 CGAAACGAGTGTACGGGAGCTCATTCGATCGGAGAGGCAAAATGCGCAAGCCG-GGATCAACCTG
** * * ** * **
26289741 GTCCCCCCTATGTGTTATCGATCCTGCTATCACAACTTTCGATCCGGTTTGATCTTAGACTGGGA
129 GTCCCCCCTGCGTGCTATCGATCCTGCTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGGA
*
26289806 ATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCG
194 ATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
* * *
26289871 TGCGGGCACTCAACCGACCAGAGAGGC
259 TGCGGGCGCTCAGCCGACCGGAGAGGC
26289898 AGGATGTGCA
Statistics
Matches: 532, Mismatches: 110, Indels: 25
0.80 0.16 0.04
Matches are distributed among these distances:
366 3 0.01
367 260 0.49
368 267 0.50
369 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (365 bp):
ACCACAACCCTCGGCCGGCTGGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGCCAACCCAC
GAAACGAGTGTACGGGAGCTCATTCGATCGGAGAGGCAAAATGCGCAAGCCGGGATCAACCTGGT
CCCCCCTGCGTGCTATCGATCCTGCTATCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAAT
GAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
CGGGCGCTCAGCCGACCGGAGAGGCCGATCGAAGAGGCATAATACGCAAGTCAAAGATCAGCCCG
ATCCCCTCTGCGTGCTGTCGAACCCGCAGCCGATCCTACC
Found at i:26290466 original size:11 final size:11
Alignment explanation
Indices: 26290431--26290460 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
26290421 CTCTCCGACA
26290431 ATGCTCCGTCG
1 ATGCTCCGTCG
26290442 ATGCTCCGTCG
1 ATGCTCCGTCG
26290453 ATGCTCCG
1 ATGCTCCG
26290461 GTGATGGTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.10, C:0.37, G:0.27, T:0.27
Consensus pattern (11 bp):
ATGCTCCGTCG
Found at i:26291376 original size:354 final size:355
Alignment explanation
Indices: 26290845--26291484 Score: 878
Period size: 354 Copynumber: 1.8 Consensus size: 355
26290835 GTGTGCTGCA
** *
26290845 GGTCCCGCTACCACAACCATCAGTCCGGTTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAA
1 GGTCCCGCTACCACAACCATCAGTCCGACTGGGGCTTAGACATGGAATGAGCTCCATATGCCTAA
* *
26290910 GCCAACCCACGAAACAGACGTGCGGGCACTCAACCGGTCGGAGAGGCAGAATGCGCAAATAGGGG
66 GCCAACCCACGAAACAGACGTGCGGGCACTCAACCGGTCGGAAAGGCAGAATGCGCAAACAGGGG
* * * * * *
26290975 ATCGGCCCGATCCCCCCAGCGTGCTGCCGATCCTGCTGTCGCAACCCTC-AGTCCGGTCTGATCT
131 ATCGGCCCGATCCCCCCAGCGTGCTACCGATCCTACTGCCACAACCCTCGA-TCCGATCTAATCT
** * *
26291039 TAGACTGTTAATGAACTCTGTATGTTTAGAC-TGGGATGAACTCCATATGCCTAAGCCAACCCAT
195 TAGACTGGGAATGAACTCTATATGATTAGACTTGGGATGAACTCCATATGCCTAAGCCAACCCAT
26291103 GAAACGAGCAAGCGGGCACTCAACCGATCGGAGAGGCATAATGCATAAGCCGAGGATCAGCCCGA
260 GAAACGAGCAAGCGGGCACTCAACCGATCGGAGAGGCATAATGCATAAGCCGAGGATCAGCCCGA
26291168 TCCCCCTCTACATGCTGTCGATCCCGCTGTC
325 TCCCCCTCTACATGCTGTCGATCCCGCTGTC
* * * *
26291199 GGTCCTGCTACCACAAGCCA-CAGTTCGACTGGGGCTTAGACGTGGAGTGCA-CTCCATATGCCT
1 GGTCCCGCTACCACAA-CCATCAGTCCGACTGGGGCTTAGACATGGAATG-AGCTCCATATGCCT
** * * *
26291262 AAGCCAACCCAC-AAA-ATGAGCGTGCGGGCACTCAGTCGGTCGGAAAGGCAGAATGCGTAAGCC
64 AAGCCAACCCACGAAACA-GA-CGTGCGGGCACTCAACCGGTCGGAAAGGCAGAATGCGCAAACA
* * *** *
26291325 GGGGATCGGTCCGGTCCCCCTTTCGTGCTATCGATCCTACTGCCACAACCCTCGATCCGATCTAA
127 GGGGATCGGCCCGATCCCCCCAGCGTGCTACCGATCCTACTGCCACAACCCTCGATCCGATCTAA
*
26291390 TCTTAGACTGGGAATGAACTCTATATGATTAGACTTGGGATGAACTCCGTATGCCTAAGCCAACC
192 TCTTAGACTGGGAATGAACTCTATATGATTAGACTTGGGATGAACTCCATATGCCTAAGCCAACC
* ** *
26291455 CATGAAGCGAGCGTGCGGGCACTCAGCCGA
257 CATGAAACGAGCAAGCGGGCACTCAACCGA
26291485 CCAGAAAGGC
Statistics
Matches: 245, Mismatches: 35, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
352 1 0.00
353 5 0.02
354 179 0.73
355 60 0.24
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (355 bp):
GGTCCCGCTACCACAACCATCAGTCCGACTGGGGCTTAGACATGGAATGAGCTCCATATGCCTAA
GCCAACCCACGAAACAGACGTGCGGGCACTCAACCGGTCGGAAAGGCAGAATGCGCAAACAGGGG
ATCGGCCCGATCCCCCCAGCGTGCTACCGATCCTACTGCCACAACCCTCGATCCGATCTAATCTT
AGACTGGGAATGAACTCTATATGATTAGACTTGGGATGAACTCCATATGCCTAAGCCAACCCATG
AAACGAGCAAGCGGGCACTCAACCGATCGGAGAGGCATAATGCATAAGCCGAGGATCAGCCCGAT
CCCCCTCTACATGCTGTCGATCCCGCTGTC
Found at i:26291442 original size:26 final size:26
Alignment explanation
Indices: 26291392--26291442 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
26291382 CGATCTAATC
*
26291392 TTAGACTGGGAATGAACTCTATATGA
1 TTAGACTGGGAATGAACTCCATATGA
*
26291418 TTAGACTTGGG-ATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCATATG
26291443 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:26292142 original size:26 final size:26
Alignment explanation
Indices: 26292113--26292165 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26292103 GGCTTAAAAT
* *
26292113 CTTAGAC-TGGGAATGAGCTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
26292139 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26292165 C
1 C
26292166 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26292668 original size:27 final size:25
Alignment explanation
Indices: 26292630--26292682 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
26292620 CTGGTCTGAT
*
26292630 CTTATATTGGGAATGAACTCCGTATG
1 CTTAGATTGGG-ATGAACTCCGTATG
*
26292656 CTTAGATTAGGGATGAACTTCGTATG
1 CTTAGATT-GGGATGAACTCCGTATG
26292682 C
1 C
26292683 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (25 bp):
CTTAGATTGGGATGAACTCCGTATG
Found at i:26292976 original size:21 final size:21
Alignment explanation
Indices: 26292950--26292997 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
26292940 AACGTGCTAC
26292950 CGATCCTGCTGTCGCAACCCT
1 CGATCCTGCTGTCGCAACCCT
26292971 CGATCCTGCTGTCGCAACCCT
1 CGATCCTGCTGTCGCAACCCT
26292992 CGATCC
1 CGATCC
26292998 GATCTGATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.15, C:0.44, G:0.19, T:0.23
Consensus pattern (21 bp):
CGATCCTGCTGTCGCAACCCT
Found at i:26293057 original size:26 final size:26
Alignment explanation
Indices: 26293006--26293057 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26292996 CCGATCTGAT
* *
26293006 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26293032 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
26293058 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26294074 original size:367 final size:368
Alignment explanation
Indices: 26293392--26294249 Score: 901
Period size: 367 Copynumber: 2.4 Consensus size: 368
26293382 GTGAGCTATC
** * *
26293392 GGTCCTGCTGCCACAACCCTTGGTCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGGCTAA
1 GGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAA
** * * * **
26293457 GCCAACCAACGAAACGGGCGTGTGGGCGCTCAGCTGGCCGAAGAGGCAGAATGCGCAAGCTGGGG
66 GCCAACCAACGAAACAAGCATGCGGGCGCTCAGCTGACCGAAGAGGCAGAATGCGCAAGCCAGGG
* * * * * **
26293522 ATTAGCTCGATCCCCCCTGCGTGCTATAGATCCTACTGTCGCAACCCTCGGTCCGATCCGATCTT
131 ATCAGCTCGATCACCCCTGCGTACTACAGATCCTACTGTCACAACCCTCAATCCGATCCGATCTT
* *
26293587 AGACTCGAAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCAATG
196 AGACTCGAAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCAACG
* * *
26293652 AAACGATCGTGCAAGCACTCAGCCGGTCGGAGAGGCCGATCGGAGAATCATAATGCATAACT-GG
261 AAACGAGCATACAAGCACTCAGCCGGTCGGAGAGGCCGATCGGAGAATCATAATGCATAACTCGG
* * *
26293716 GGATCAGCCT-GATCCCCTTCTGTGTGTTGTCGAACCCGTTACT
326 GGATC-GCCTCGATCCCCCTCTGCGTGCTGTCGAACCCGTTACT
* * * **
26293759 GGTCCTGCTGCCACAACCCTCAGTTCGACTGGGGTTTAGACGTGGAATGTA-CTCTGTATGCCTA
1 GGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTA
* * * * *
26293823 AGCCAACCCATGAAACAAGCATGCGGGCGCTCAG-TCGATCGGAGAGGCAGAATGTGCAAGCCAG
65 AGCCAACCAACGAAACAAGCATGCGGGCGCTCAGCT-GACCGAAGAGGCAGAATGCGCAAGCCAG
* * * * *
26293887 GGATCGGC-CTGGTCACCCCTGCGTACTACCGATCCTGCTGTCACAACCCTCAATCCGATTCGAT
129 GGATCAGCTC-GATCACCCCTGCGTACTACAGATCCTACTGTCACAACCCTCAATCCGATCCGAT
* * ** * *
26293951 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCTTTATTCCTAAGTCAACCC
193 CTTAGACTCGAAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCA
* * * * * * *
26294016 ACGAAACGAGCATATAGGCGCTCAGTCGGTCGGAGAGGTCGATCAGTGAG-GT-ATAATGCGTAA
258 ACGAAACGAGCATACAAGCACTCAGCCGGTCGGAGAGGCCGATC-G-GAGAATCATAATGCATAA
* *
26294079 GTCGGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCG-----G-T-C-
321 CTCGGGGATCGCCTCGATCCCCCTCTGCGTGCTGTCGAACCCGTTACT
* * *
26294119 ---CC-GCTGCCACAACCCTCTGCTCCGACTGGGGGTTAGACATGGAATGAGCTCCCTATGCCTG
1 GGTCCTGCTGCCACAACCCTCAG-TCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTA
** * * * * * *
26294180 AGCCAACCAACGAAACGGGCAAGCGAGCGCTCAGTTGGCCGGAGAGGTAGAATGCGCAAGCC-GT
65 AGCCAACCAACGAAACAAGCATGCGGGCGCTCAGCTGACCGAAGAGGCAGAATGCGCAAGCCAG-
26294244 GGATCA
129 GGATCA
26294250 ACCCCGGTCC
Statistics
Matches: 406, Mismatches: 74, Indels: 32
0.79 0.14 0.06
Matches are distributed among these distances:
356 18 0.04
357 90 0.22
358 1 0.00
361 1 0.00
362 1 0.00
363 1 0.00
366 2 0.00
367 260 0.64
368 29 0.07
369 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (368 bp):
GGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAA
GCCAACCAACGAAACAAGCATGCGGGCGCTCAGCTGACCGAAGAGGCAGAATGCGCAAGCCAGGG
ATCAGCTCGATCACCCCTGCGTACTACAGATCCTACTGTCACAACCCTCAATCCGATCCGATCTT
AGACTCGAAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCAACG
AAACGAGCATACAAGCACTCAGCCGGTCGGAGAGGCCGATCGGAGAATCATAATGCATAACTCGG
GGATCGCCTCGATCCCCCTCTGCGTGCTGTCGAACCCGTTACT
Found at i:26295234 original size:26 final size:26
Alignment explanation
Indices: 26295205--26295254 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
26295195 ATCCAATCTG
26295205 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
26295231 AGACTGGGTATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
26295255 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:26295435 original size:356 final size:355
Alignment explanation
Indices: 26294207--26295582 Score: 1255
Period size: 356 Copynumber: 3.8 Consensus size: 355
26294197 GGCAAGCGAG
* * * * ** * * *
26294207 CGCTCAGTTGGCCGGAGAGGTAGAATGCGCAAGCCGTGGATCAACCCCGGTCCCCCTCTGCGTGC
1 CGCTCAGTCGGCTGGAGAGGCATAATGCATAAGCCGAGGATC-AGCCCGGTCCCCCTCTACGTGC
* * *
26294272 TGTCGATCCCGCTGTCAGTCTTGCTACCACAACCCTCAGTCCGATTGGGGCTTAGACG-TGAAAT
65 TGTCGATCCCGCTGTCGGTCCTGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACGTTG-AAT
* * * * * * * * *
26294336 TTACTCCATATGCCTAAGCCAACACATGAAATGAGCGTGCGGGTGCT-TAGCCGACTGGAGAGGC
129 GTACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAATCGGTC-GGAGAGGC
* * * * * * *
26294400 AAAATGCGCAAGCCAGGGA-CCAGCCTGGTCCTCCTTGTGTGTTGTCGATCCTGCTGTCGCAACC
193 AGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCTTGTGTGCTGTCGATCCTGCTGCCGCAACC
* * * *
26294464 TTCGATCTGATCTGATCTTAGACTGGGAATTAACTCTGTCTGCTTAGACTGGGGATGAACTCCGT
257 CTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGT
* **
26294529 ATGCCTAAGTCAACCCATGAAACGAGCGTGTGGG
322 ATGCCTAAGTCAACCCATGAAACGAGCGTGCGTT
* * * ** * *
26294563 CGGTCAGTC-GATCGGAGAGGCATAATGCATAAGCCGAGGATCTGTTCGGTCCCCCACTACATGC
1 CGCTCAGTCGGCT-GGAGAGGCATAATGCATAAGCCGAGGATCAGCCCGGTCCCCCTCTACGTGC
* * * * *
26294627 TGTCAAT-CCGACTG-CGAGTCCTGTTACCACAACCTTCAGTTCGACTGGGGCTTAGACGTCGAA
65 TGTCGATCCCG-CTGTCG-GTCCTGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACGTTGAA
* * * * * * *
26294690 TGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAGTCGGCCGAAGAGGT
128 TGTACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAATCGGTCGGAGAGGC
* * * * * * * * * *
26294755 AGAATGTGTAAGCAGGGGATCGGCCCGGTCCCCCCTGTATGCTATCGATCTTAC--CCGTAACCC
193 AGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTGTGTGCTGTCGATCCTGCTGCCGCAACCC
* * * * * * *
26294818 TCGATCTGGTTTGATCTTAGGCTGGGAATGAATTCCGTATGCTTAGACTGGGGATAAACTTCGTT
258 TCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTA
*
26294883 TGCCTAAGTCAACCCATGAAACGAGTGTGCGGACGCTT
323 TGCCTAAGTCAACCCATGAAACGAGCGT---G-CG-TT
** * * * * *
26294921 AACGGGC-CAGAGAGGCCGACAGAAGAGGCATAATGCGTAAGTCGAGGATCAACTCGGTCCCCCT
1 --C--GCTCAG-TCGGCTG---G-AGAGGCATAATGCATAAGCCGAGGATCAGCCCGGTCCCCCT
* * ** * *
26294985 CTACGTGCTGCCGATCCCGCTGTCGGTCCTGCTACCACAACCATTGGTCCGACTAGGGCTTAGAT
57 CTACGTGCTGTCGATCCCGCTGTCGGTCCTGCTACCACAACCCTCAGTCCGACTGGGGCTTAGAC
* * ** * * *
26295050 GTGGAATGCACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAATTGGTCGG
122 GTTGAATGTACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAATCGGTCGG
* * *
26295115 AGAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCCTTTGCGTGCTGTCGATCCTGCTGCC
187 AGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-TTGTGTGCTGTCGATCCTGCTGCC
* * ** * *
26295180 ACAACCCTCGATCCGATCCAATCTGAGACTGGGAATGAACTCCGTATGCTTAGACTGGGTATGAA
251 GCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
* *
26295245 CTCCGTATGCCTAAGTCAACCCATGAAAGGAGCATGCGTT
316 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGTT
* * * * *
26295285 TGCTCAGTCGGCTGGAGAAGCATAATGCATAAGCCGGGGATCAGCCCGATCCCCCTTTACGTGCT
1 CGCTCAGTCGGCTGGAGAGGCATAATGCATAAGCCGAGGATCAGCCCGGTCCCCCTCTACGTGCT
* ** * ** *
26295350 GTCGATCCTGCTACCGGTCTTGCTACCACAACCCTCAGTCCGGTTGGGGCTTAGACATTGAATGT
66 GTCGATCCCGCTGTCGGTCCTGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACGTTGAATGT
* * ** *
26295415 ACTCTATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGTAGA
131 ACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAATCGGTCGGAGAGGCAGA
** * ** * **
26295480 ATGTACAAGCCGGGGATCGGCCTAGT--CCCTTCCGTGTGCTATCGATCCTGCTGCCTTAACCCT
196 ATGCGCAAGCCGGGGATCGACCCGGTCCCCCTT--GTGTGCTGTCGATCCTGCTGCCGCAACCCT
* * * * *
26295543 CGATTTGGTCCGATCTTAGACT-GGAATAAACTTCGTATGC
259 CGATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
26295583 ATAAGTCAAC
Statistics
Matches: 805, Mismatches: 186, Indels: 60
0.77 0.18 0.06
Matches are distributed among these distances:
353 90 0.11
354 23 0.03
355 189 0.23
356 205 0.25
357 2 0.00
360 7 0.01
361 6 0.01
362 2 0.00
363 1 0.00
364 2 0.00
365 3 0.00
366 171 0.21
367 19 0.02
369 85 0.11
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (355 bp):
CGCTCAGTCGGCTGGAGAGGCATAATGCATAAGCCGAGGATCAGCCCGGTCCCCCTCTACGTGCT
GTCGATCCCGCTGTCGGTCCTGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACGTTGAATGT
ACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAATCGGTCGGAGAGGCAGA
ATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCG
ATCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGC
CTAAGTCAACCCATGAAACGAGCGTGCGTT
Found at i:26295849 original size:26 final size:26
Alignment explanation
Indices: 26295797--26295849 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26295787 CCGGTTCGAT
*
26295797 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
26295823 CTTAGACTGGGGATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
26295849 C
1 C
26295850 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:26296334 original size:33 final size:33
Alignment explanation
Indices: 26296292--26296378 Score: 174
Period size: 33 Copynumber: 2.6 Consensus size: 33
26296282 CGGGGATCAA
26296292 ACGGGTTGTAGGTGGGTTCAAGCATATCTTTAC
1 ACGGGTTGTAGGTGGGTTCAAGCATATCTTTAC
26296325 ACGGGTTGTAGGTGGGTTCAAGCATATCTTTAC
1 ACGGGTTGTAGGTGGGTTCAAGCATATCTTTAC
26296358 ACGGGTTGTAGGTGGGTTCAA
1 ACGGGTTGTAGGTGGGTTCAA
26296379 TCAGTCGAAG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 54 1.00
ACGTcount: A:0.21, C:0.14, G:0.33, T:0.32
Consensus pattern (33 bp):
ACGGGTTGTAGGTGGGTTCAAGCATATCTTTAC
Found at i:26297049 original size:26 final size:26
Alignment explanation
Indices: 26297020--26297072 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26297010 CCGGTCTGAT
*
26297020 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
26297046 CTTAGACTGTGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
26297072 C
1 C
26297073 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:26298507 original size:26 final size:26
Alignment explanation
Indices: 26298478--26298556 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
26298468 CCGGCCCAAT
26298478 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
26298504 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCGTATG
26298530 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
26298556 C
1 C
26298557 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 47 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:26299180 original size:26 final size:26
Alignment explanation
Indices: 26299144--26299195 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26299134 CCAGTCTGAT
*
26299144 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26299170 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26299196 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26299209 original size:184 final size:183
Alignment explanation
Indices: 26299002--26299353 Score: 429
Period size: 184 Copynumber: 1.9 Consensus size: 183
26298992 CGTGGAATGT
* * * * * *
26299002 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGATCGGAGAGGCAGA
1 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAATCGACCAGAGAGGCAGA
* ** * *
26299067 AGGCGTATGCTGGGGATCGATTCGATCCCCCCTACGTGCTATCGATCCTGCTACT-GTAACCCTC
66 AGGCGTAAGCTGGGGATCGACCCGAT-CCCCCTACGTGCTATCGATCCTACT-CTCGCAACCCTC
*
26299131 GATCCAGTCTGATCTTAGACTGGGAATGAACT-TCGTATGCTTAGATTGGGGATGA
129 GATCCAGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGATTGGGGATGA
* * * * *
26299186 ACTCCGTATGGCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAATCGACCAGAGAGGTAGG
1 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAATCGACCAGAGAGGCAGA
* * * * * * * *
26299251 ATGCGTAAGTTGGGGATCGACCCGATCCCCTTGCGTGCTGTCGATCCTACTGTCGCAACCCTTGG
66 AGGCGTAAGCTGGGGATCGACCCGATCCCCCTACGTGCTATCGATCCTACTCTCGCAACCCTCGA
*
26299316 TCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
131 TCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGC
26299354 ATAAGTCAAC
Statistics
Matches: 140, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
182 1 0.01
183 63 0.45
184 76 0.54
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.23
Consensus pattern (183 bp):
ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAATCGACCAGAGAGGCAGA
AGGCGTAAGCTGGGGATCGACCCGATCCCCCTACGTGCTATCGATCCTACTCTCGCAACCCTCGA
TCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGGATGA
Found at i:26299656 original size:157 final size:157
Alignment explanation
Indices: 26299170--26299670 Score: 465
Period size: 157 Copynumber: 3.2 Consensus size: 157
26299160 ACTTCGTATG
* * * *
26299170 CTTAGATTGGGGATGAACTCCGTATGGCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAAT
1 CTTAGATAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTC-AG
* * * * * * *
26299235 CGACCAGAGAGGTAGGATGCGTAAGTTGGGGATCGACCCGAT-CCCCTTGCGTGCTGTCGATCCT
65 CGGCCAGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
* * * *
26299299 ACTGTCGCAACCCTTGGTCCGGTCCGAT
130 ACTGTCCCAACCCTTGGTCTGATTCGAT
* * * * * * *
26299327 CTTAGACT-GGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCATTCGGGCACTGAG
1 CTTAGA-TAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAG
* * * **
26299391 CTGGCCA-ATGAGGCATAATGCGCAAGTCGAGGATC-AGCCCGATCCCCCTCTACATGCTACCGA
65 C-GGCCAGA-GAGGCAGAATGCGCAAGTCGAGGATCGA-CCCGATCCCCC-CTGCGTGCTGTCGA
** * * * **
26299454 TCCCGCTG-CCACAACCCTCGGTCTGACTGGGG
126 TCCTACTGTCC-CAACCCTTGGTCTGATTCGAT
* * * * * * *
26299486 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCGCTCAG
1 CTTAGATAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA-GCATACGGGCGCTCAG
* * * *
26299550 CGGCCAGAGAGGCAGAATACGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTACTGTCGATCCT
65 CGGCCAGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCT
26299615 ACTGTCCCAACCCTTGGTCTGATTCGAT
130 ACTGTCCCAACCCTTGGTCTGATTCGAT
*
26299643 CTTAGATAGGGAATTAAACTCCGTATGC
1 CTTAGATAGGGAA-TGAACTCCGTATGC
26299671 TTAGACTGAG
Statistics
Matches: 264, Mismatches: 67, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
156 4 0.02
157 123 0.47
158 58 0.22
159 79 0.30
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGATAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGC
GGCCAGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTA
CTGTCCCAACCCTTGGTCTGATTCGAT
Found at i:26300041 original size:26 final size:26
Alignment explanation
Indices: 26300012--26300064 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26300002 CCGGTCCGAT
26300012 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* * *
26300038 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
26300064 C
1 C
26300065 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:26300065 original size:368 final size:365
Alignment explanation
Indices: 26299450--26300485 Score: 1303
Period size: 367 Copynumber: 2.8 Consensus size: 365
26299440 CTACATGCTA
* *
26299450 CCGATCCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCC
1 CCGATCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGTA-CTCCGTATGCC
* * * * * *
26299514 TAAGCCAACCCATGAAAC-AGGCGTGCGGGCGCTC-AGCGGCCAGAGAGGCAGAATACGCAAGCC
65 TAAGCCAACCCACGAAACGA-GCGTGCGGGTGCTCAATCGACCGGAGAGGCAGAATGCGCAAGCC
* * * * * * *
26299577 GAGGATCGACCCGGTCCCCCCTGCGTACTGTCGATCCTACTGTCCCAACCCTTGGTCTGATTCGA
129 GAGGATCG-CCCGGTCCCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCGATCCGGTTCGA
* *
26299642 TCTTAGA-TAGGGAATTAAACTCCGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAA
193 TCTTAGACTA-GGAA-TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* * *
26299706 CCCACGAAACGAGCGTACGAATGTTCAGCCGACCAGAGAGGCAGGCCTAAGAGGCATAACGTGTA
256 CCCACGAAACGAGCGTACGAA-GCTCAGCCGACCAGAGAGGCAGGCCGAAGAGGCATAACGCGTA
*
26299771 AGCCAAGGATCAACCCGATCCCCCTCTACGTGCTGTCGATCCCGCTG
320 AGCCAAGGATCAACCCGATCCCCCTCTACGTGCTGTCGATCCC-ATG
*
26299818 CC-AGTCCTGCTGCCACAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGTACTCCGTATGCC
1 CCGA-TCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGTACTCCGTATGCC
* *
26299882 TAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAATCGACCGGAGAGGTAGAATGCGCAAGCCG
65 TAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAATCGACCGGAGAGGCAGAATGCGCAAGCCG
* * * *
26299947 AGGATCAGCCCCGTCCCCCCTGCGTGCCATCGATCCTGCTGTCGCAACCCTCGATCCGGTCCGAT
130 AGGATC-GCCCGGTCCCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCGATCCGGTTCGAT
* *
26300012 CTTACACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACTC
194 CTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * ** * * * * *
26300077 ACGAAACGAGCATGCGAGCGCTCAGCC-AGCTGGAAAGGCTGGTCGGAGAGGCATAATGCGTAAG
259 ACGAAACGAGCGTACGA-AGCTCAGCCGA-CCAGAGAGGCAGGCCGAAGAGGCATAACGCGTAAG
* *** * * **
26300141 TCAAGGATCAGGTCGGTCCCTCTCTGTGTGCTGTCGATCCCATG
322 CCAAGGATCAACCCGATCCCCCTCTACGTGCTGTCGATCCCATG
* ** *
26300185 CCGATCTTGCTGCCACAACCCTCGGT-TCGGTTGGGACTTAGACATGGAATGTACTCCGTATGCC
1 CCGATCCTGCTGCCACAACCCTCGGTCT-GACTGGGGCTTAGACATGGAATGTACTCCGTATGCC
* *
26300249 TAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAATCGATCGGAGAGGCAGAATGTGCAAGCCG
65 TAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAATCGACCGGAGAGGCAGAATGCGCAAGCCG
* ** * * *
26300314 GGGATCGGTTCGGTCCCCCTTGCGTGCTATCGATCCTACTATCGTAACCCTCGATCCGGTTCGAT
130 AGGATC-GCCCGGTCCCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCGATCCGGTTCGAT
* * * *
26300379 CTTAGACTGGGAATGAACTCTGTATGCTTAGAATGGGGATGAAGTCCGTATGCCTAAGTCAACCC
194 CTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* *
26300444 ACGAAACGAGCGTTCGGGAGCTCAGCCGACCAGAGAGGCAGG
259 ACGAAACGAGCGTAC-GAAGCTCAGCCGACCAGAGAGGCAGG
26300486 ATGCGTAAGT
Statistics
Matches: 574, Mismatches: 82, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
366 1 0.00
367 263 0.46
368 219 0.38
369 88 0.15
370 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (365 bp):
CCGATCCTGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCT
AAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAATCGACCGGAGAGGCAGAATGCGCAAGCCGA
GGATCGCCCGGTCCCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCGATCCGGTTCGATCT
TAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTACGAAGCTCAGCCGACCAGAGAGGCAGGCCGAAGAGGCATAACGCGTAAGCCAA
GGATCAACCCGATCCCCCTCTACGTGCTGTCGATCCCATG
Found at i:26300415 original size:26 final size:26
Alignment explanation
Indices: 26300379--26300431 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26300369 CCGGTTCGAT
* *
26300379 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
* *
26300405 CTTAGAATGGGGATGAAGTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
26300431 C
1 C
26300432 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:26301370 original size:158 final size:154
Alignment explanation
Indices: 26300833--26301374 Score: 471
Period size: 158 Copynumber: 3.4 Consensus size: 154
26300823 TTAAACATGG
* **
26300833 AATGAATTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAG
1 AATGAACTCCGTATG-CTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGATCGGAGAG
* * *
26300898 GTAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTACGTGCTTTCGATCCTGCTGCCGCAAC
65 GCAGAATGCGCAAG-CGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAAC
* *
26300963 CCTCGGTCTGGTCTGATCTTAGACTGGG
129 CCTC-GTC-CGTCTGATCTTAGACTGGA
** * * * * * * * *
26300991 AATGAACTCCGTATAAATATGTCAACCCATGAAACGAGCGTGCGGCCATTTAGCTTG-TCGAAGA
1 AATGAACTCCGTAT-GCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC-CGATCGGAGA
* * * * * *
26301055 GGCATAATGCGCAAGCTGGGGATCGGCTCGGTCCCCTTCTACGTGCTGTC-AGT-CTCGCTGCCA
64 GGCAGAATGCGCAAGC-GGGGATCGACCCGATCCCC-CCTACGTGCTGTCGA-TCCT-GCTGCCG
* ** **
26301118 CAACCCTCGATCCGGCTGGGGCTTAGACACGA
125 CAACCCTCG-TCCGTCT-GATCTTAGACTGGA
* * * * * **
26301150 AATGAGCTCCCTATGACTAAGCCAACCCACGAAACGGGCGTGCGAGCACTCAGCTGGCCGGAGAG
1 AATGAACTCCGTATG-CTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGATCGGAGAG
* * ** *
26301215 GCAGAATGCACAAGTCGGGGATCGACCCAATCCCCCCTGTGTGCTGTCGATCCTG-TAGCTGCAA
65 GCAGAATGCGCAAG-CGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCT-GCCGCAA
*
26301279 CCCTCAGTCCAATCTGATCTTAGACTGGA
128 CCCTC-GTCC-GTCTGATCTTAGACTGGA
** * * *
26301308 AATGAACTTTGTATGCTTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAG
1 AATGAACTCCGTATGC-TAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGATCGGAGAG
26301373 GC
65 GC
26301375 CGATCGGAGA
Statistics
Matches: 295, Mismatches: 72, Indels: 34
0.74 0.18 0.08
Matches are distributed among these distances:
157 3 0.01
158 173 0.59
159 118 0.40
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (154 bp):
AATGAACTCCGTATGCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGATCGGAGAGG
CAGAATGCGCAAGCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCC
TCGTCCGTCTGATCTTAGACTGGA
Found at i:26301378 original size:13 final size:13
Alignment explanation
Indices: 26301360--26301386 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26301350 CGGGCGCTCA
26301360 GCCGATCGGAGAG
1 GCCGATCGGAGAG
26301373 GCCGATCGGAGAG
1 GCCGATCGGAGAG
26301386 G
1 G
26301387 TATAATGCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.48, T:0.07
Consensus pattern (13 bp):
GCCGATCGGAGAG
Found at i:26301993 original size:368 final size:366
Alignment explanation
Indices: 26301309--26302099 Score: 896
Period size: 368 Copynumber: 2.2 Consensus size: 366
26301299 TAGACTGGAA
* * * *
26301309 ATGAACTTTGTATGCTTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGG
1 ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAAAGG
* * ** * * * *
26301374 CCGATCGGAGAGGTATAATGCGCAAGTTGGGGATCAACCCGGTCTCCCTCTGTATGCTGCCGATC
66 CCGATCGGAGAGGCATAATGCACAACCTGAGGATCAACCCGGTCCCCCTCTATATGCTACCGATC
* ** * *
26301439 CCGTTGTCGGTCTTACTGCCATGACCTTCAGTCGGGCTGGGGCTTAGAAGTGGAATGTACTCTGT
131 CCGTTGTCAGTCTTACTGCCACAACCCTCAGTCGGGCTGAGGCTTAGAAGTGGAATGTACTCTGT
* *
26301504 ATGCCTAAGCCAACCCACAAAATGAGCGTGCGGCCGTTCAACCAGCCAGAAAGGCAGAATGCATA
196 ATGCCTAAGCCAACCCACAAAACGAGCATGCGGCCG-TCAACCAGCCAGAAAGGCAGAATGCATA
* * * * *
26301569 AACCGAGGATCGGCCTGATCCCCCCTGCGTGCTGCAGATCCTGCTACTGCAACCCTCGATCCAGT
260 AACCGAGGATCAGCCTGATCCCCCCTACGTACTACAGATCCTGCTACTGCAACCCTCAATCCAGT
*
26301634 CCAATCTTAGACTGAGAATGAACTCCGTATGCTTAGAATGGGG
325 CCAATCTTAGACTGAGAATGAACTCCATATGCTTAGAAT-GGG
* * * * *
26301677 ATGAACTTCGTATGCCTAAGTGAACCCACGAAACAAGCGTACCGACGCTCAGCCTG-TCGGAAAG
1 ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GATCGGAAAG
* * * ** *
26301741 GCCGATCGGAGAGGCATAATGTATAACCCT-AGGATCAGCTTGGTCCCCCTCTATGTGCTACCGA
65 GCCGATCGGAGAGGCATAATGCACAA-CCTGAGGATCAACCCGGTCCCCCTCTATATGCTACCGA
* * * *
26301805 TCCCGTTGTCAGTCTTGCTGCCACAACCCTCGGTCTGGTTGAGGCTTAGACA-TGGAATGTACTC
129 TCCCGTTGTCAGTCTTACTGCCACAACCCTCAGTCGGGCTGAGGCTTAGA-AGTGGAATGTACTC
* * * *
26301869 TGTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCAC-TCAATC-GGCTGAAGAGGCAGAAT
193 TGTATGCCTAAGCCAACCCACAAAACGAGCATGC-GGC-CGTCAACCAGCCAGAA-AGGCAGAAT
* * * * * *
26301932 GCGTAAGCC-AGGGATCAG-CTCGATCCCCCCTATGTACTACTGATCCTGCT-GTCGTAACCCTC
255 GCATAAACCGA-GGATCAGCCT-GATCCCCCCTACGTACTACAGATCCTGCTACT-GCAACCCTC
* *** * * *
26301994 AATCCGGTTTGATCTTAGACTGGGAATGAACTCCATATTCTTAGACTGGG
317 AATCCAGTCCAATCTTAGACTGAGAATGAACTCCATATGCTTAGAATGGG
* *
26302044 ATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA
1 ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA
26302100 CCAGAGAGGC
Statistics
Matches: 349, Mismatches: 64, Indels: 21
0.80 0.15 0.05
Matches are distributed among these distances:
366 1 0.00
367 59 0.17
368 282 0.81
369 6 0.02
370 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (366 bp):
ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAAAGG
CCGATCGGAGAGGCATAATGCACAACCTGAGGATCAACCCGGTCCCCCTCTATATGCTACCGATC
CCGTTGTCAGTCTTACTGCCACAACCCTCAGTCGGGCTGAGGCTTAGAAGTGGAATGTACTCTGT
ATGCCTAAGCCAACCCACAAAACGAGCATGCGGCCGTCAACCAGCCAGAAAGGCAGAATGCATAA
ACCGAGGATCAGCCTGATCCCCCCTACGTACTACAGATCCTGCTACTGCAACCCTCAATCCAGTC
CAATCTTAGACTGAGAATGAACTCCATATGCTTAGAATGGG
Found at i:26303008 original size:26 final size:26
Alignment explanation
Indices: 26302972--26303050 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
26302962 CTAGTCTGAT
*
26302972 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
26302998 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
26303024 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
26303050 C
1 C
26303051 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:26303417 original size:26 final size:26
Alignment explanation
Indices: 26303368--26303418 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26303358 GGTCTGATCC
**
26303368 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
26303394 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
26303419 CTAAGTTAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:26304484 original size:158 final size:158
Alignment explanation
Indices: 26304034--26304493 Score: 433
Period size: 158 Copynumber: 2.9 Consensus size: 158
26304024 TGAGCGAAAA
* * * * **
26304034 AAGCCAACCCACGAAACGAGCATGCAGGTGCTCA-ACCAGTCGAAGAGGCAAAATGCACAAGTTG
1 AAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGACGA-TCGAAGAGGCAAAATGCGCAAGCCG
* * * * *
26304098 AGGATCCACCCGATCCCCCATTGCGTGCTGTCGATCCTGCTACTATAACCCTCGGTCCGGTCCGA
65 AGGATCGACCCGATCCCCC-TTGCGTGCTGTCCATCCTACTACCATAACCCTCGGTCCGGTTCGA
*
26304163 TCTTAGACTGGGAATAAACTCCGTATGCAT
129 TCTTAGACTGGGAATAAACTCCCTATGCAT
* * * * ** * * ** *
26304193 AAGTCAACCCACGAAATGAACGTGCAGACATTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGA
1 AAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGACGATCGAAGAGGCAAAATGCGCAAGCCGA
* * * * * *
26304258 GGATTGACCCGATCCCCCTTACGTGCTG-CCGATCCGACTACCACAAACCTCGGTCCGGCTT-GG
66 GGATCGACCCGATCCCCCTTGCGTGCTGTCC-ATCCTACTACCATAACCCTCGGTCCGG-TTCGA
* * * *
26304321 GCTTAGACAT-GGAATGAGCTCCCTATGCCT
129 TCTTAGAC-TGGGAATAAACTCCCTATGCAT
* * * * *
26304351 AGGCCAACCCACGAAACGGGTGTGCAGGCGCTCAGTCGATCGAAGAGGCAAAATGCGCAAGCCGG
1 AAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGACGATCGAAGAGGCAAAATGCGCAAGCCGA
* * * * * **
26304416 GGATCGGCCCGGTCCCCCCTGTGTGCTGTCCATCCTACTACCGTAACCCTCAATCCGGTTCGATC
66 GGATCGACCCGATCCCCCTTGCGTGCTGTCCATCCTACTACCATAACCCTCGGTCCGGTTCGATC
*
26304481 TTAGATTGGGAAT
131 TTAGACTGGGAAT
26304494 GAACATCGTA
Statistics
Matches: 231, Mismatches: 63, Indels: 15
0.75 0.20 0.05
Matches are distributed among these distances:
157 4 0.02
158 160 0.69
159 66 0.29
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (158 bp):
AAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGACGATCGAAGAGGCAAAATGCGCAAGCCGA
GGATCGACCCGATCCCCCTTGCGTGCTGTCCATCCTACTACCATAACCCTCGGTCCGGTTCGATC
TTAGACTGGGAATAAACTCCCTATGCAT
Found at i:26304531 original size:26 final size:26
Alignment explanation
Indices: 26304480--26304532 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26304470 CCGGTTCGAT
* *
26304480 CTTAGATTGGGAATGAACATCGTATG
1 CTTAGACTGGGAATGAACATCATATG
*
26304506 CTTAGACTGGGGATGAAC-TCCATATG
1 CTTAGACTGGGAATGAACAT-CATATG
26304532 C
1 C
26304533 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACATCATATG
Found at i:26305164 original size:367 final size:355
Alignment explanation
Indices: 26304295--26305319 Score: 1075
Period size: 367 Copynumber: 2.8 Consensus size: 355
26304285 GCCGATCCGA
* * * * *
26304295 CTACCACAAACCTCGGTCCGGCTTGGGCTTAGACATGGAATGAGCTCCCTATGCCTAGGCCAACC
1 CTACCA-AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTGCT-CTTATGCCTAAGCCAACC
* * * * * * *
26304360 CACGAAACGGGTGTGCAGGCGCTCAGTCGATCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCC
64 CACGAAACGAGCGTGC-GGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCT
* * * * * *
26304425 CGGTCCCCCCTGTGTGCTGTCCATCCTACTACCGTAACCCTCAATCCGGTTCGATCTTAGATTGG
128 TGGTCCCCCCTGTGTGCTGTCAATCCTACTGCCGCAACCCTCGATCCGGTCCGATCTTAGATTGG
* * * *
26304490 GAATGAACATCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATAAAATGAG
193 GAATGAACTTCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATAAAACGAG
* * *
26304555 CGTGCGGGCACTCAGCCGGCCAGACAGGCCGGTCGGAGAGGCATAATGCACAAGCCAAGGATTAG
258 CGTGCGGGCGCTCA----GCC-G--A------TCGGAGAGGCATAATACACAAGCCAAGGATCAG
* *
26304620 CCCGGTCCCCCTCTGCGTACTGTCGATCCCACTGCCGGTCCTGTTG
310 CCCGATCCCCCTCTGCGTACTGTCGATCCCACTGCCGGTCCGGTTG
* * *
26304666 CTA-C-AACCCTCGGTCAGGCTGGGGCTTAGACGTGGAATGTACTCCTTATGCCTAAGCCAACCC
1 CTACCAAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTGCT-CTTATGCCTAAGCCAACCC
* * * *
26304729 AAGAAACGAACGTGTCGGCGCTCAGCCGACCGAAGAGGC-GAAATGCGCAAGCCAAGGATTGGCT
65 ACGAAACGAGCGTG-CGGCGCTCAGCCGACCGAAGAGGCAG-AATGCGCAAGCCGAGGATCGGCT
* * ** * * *
26304793 TGGTCCCCCCTATGGGCTGTCAATCCTGTTGCTGCAACCCTCGGTCCGATCCGATCTTAGATTGG
128 TGGTCCCCCCTGTGTGCTGTCAATCCTACTGCCGCAACCCTCGATCCGGTCCGATCTTAGATTGG
* ** *
26304858 GAATGAACTTCGTATGCTTAGACTAGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAG
193 GAATGAACTTCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATAAAACGAG
* ** * * **
26304923 CGTACGGGCGCTCAGCCGATCGGAGAGGCATAATACGTAAGCTAGGGATCAGCTTGATCCCCCTC
258 CGTGCGGGCGCTCAGCCGATCGGAGAGGCATAATACACAAGCCAAGGATCAGCCCGATCCCCCTC
* * **
26304988 TGCGTGCTTTCGATCCCGTTGCCGATCCCGCTACCGGTCCTG
323 TGCGTACTGTCGATCCCACTGCCG-----G-T-CCGGT--TG
* *
26305030 CTACCATAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGTGCTCTATATGCCTAAGCCAACC
1 CTACCA-AACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTGCTCT-TATGCCTAAGCCAACC
* * * * * *
26305095 CACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGACAGAATGCGTAAGTCGATGATCGACT
64 CACGAAACGAGCGTGC-GGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCT
* * * * *
26305160 TGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTTGATTCGGTCCGATCTTAGACTGG
128 TGGTCCCCCCTGTGTGCTGTCAATCCTACTGCCGCAACCCTCGATCCGGTCCGATCTTAGATTGG
* * * *
26305225 GAATGAACTCCGTATGCTTAGATTGGGGATGAACTTCGTATGCCTAAGTTAACCTATAAAACGAG
193 GAATGAACTTCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATAAAACGAG
* *
26305290 CGTGCGGGCGCTCAGCCGACCAGAGAGGCA
258 CGTGCGGGCGCTCAGCCGATCGGAGAGGCA
26305320 GGATGTGCAA
Statistics
Matches: 543, Mismatches: 94, Indels: 38
0.80 0.14 0.06
Matches are distributed among these distances:
355 57 0.10
360 1 0.00
361 2 0.00
362 4 0.01
363 1 0.00
364 8 0.01
365 1 0.00
366 3 0.01
367 238 0.44
368 223 0.41
369 1 0.00
370 1 0.00
371 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (355 bp):
CTACCAAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTGCTCTTATGCCTAAGCCAACCCA
CGAAACGAGCGTGCGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGCTTGG
TCCCCCCTGTGTGCTGTCAATCCTACTGCCGCAACCCTCGATCCGGTCCGATCTTAGATTGGGAA
TGAACTTCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATAAAACGAGCGT
GCGGGCGCTCAGCCGATCGGAGAGGCATAATACACAAGCCAAGGATCAGCCCGATCCCCCTCTGC
GTACTGTCGATCCCACTGCCGGTCCGGTTG
Found at i:26305244 original size:26 final size:26
Alignment explanation
Indices: 26305215--26305267 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26305205 TCGGTCCGAT
26305215 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
26305241 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26305267 C
1 C
26305268 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26306514 original size:158 final size:157
Alignment explanation
Indices: 26305964--26306794 Score: 659
Period size: 158 Copynumber: 5.2 Consensus size: 157
26305954 GCTCTGTATG
* * * * *
26305964 CTTAGACAT-GGAATGAACTCCGTGTACCTAAGCTAACCCACGAAACGAGCGTGCGAGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTCAG
* * * * *
26306028 CCGACTGGAGAGACAGAATGCACAAGCCGGGGATCAACCCGGTCCCCCCTACATGCTGTCGATCC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC-ACCCGGTCCCCCCTACGTGCTGTCGATCC
* *** *
26306093 TACTACTGTAACCCTC-GATCTGGTCTGAT
129 TACTGCCACAACCCTCAG-TCCGGTCTGAT
* * * * *
26306122 CTTAGACTGGGAATGAACTCCGCATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCATTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTCAGC
* * * * * * * *
26306187 CAGCCGAAGAGGCATAATGCGCAAGCTGGGGATCGGCCCAGTCCCCCTCTACGTGCTGCCGGTCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC-ACCCGGTCCCCC-CTACGTGCTGTCGATCC
** * **
26306252 CGCTACCACAACCCTCAGTCCGG-CTGGGG
129 TACTGCCACAACCCTCAGTCCGGTCT-GAT
* * * * * * ** * *
26306281 CTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTACACGCGTTGAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTCAG
* * * *
26306345 CCGGTCGGAGAGGCAGAATGCGCAAGCAGGAGATCGACCCGGTCCCCCCTACGTACTGTCGATCC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC-ACCCGGTCCCCCCTACGTGCTGTCGATCC
26306410 TACTGCCACAACCCTCAGTCCGGTCTGAT
129 TACTGCCACAACCCTCAGTCCGGTCTGAT
* * * * * * *
26306439 CTTAGACTGGGAATGAACTCCGTTTGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTCAGC
* * * * *
26306504 CGGCCAGAGAGGCATAATGTGCAAGCTGGGGATCAGCCCGATCCCTCTTTGCACGCTACCGATCC
66 CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCA-CCCGGT-CC-C----C-C-CTA-CG-T--
* * **
26306569 CGCTGTCGGTCCTACTGCCACAACCCTCCGTCCGG-CTGGGG
118 -GCTGTCGATCCTACTGCCACAACCCTCAGTCCGGTCT-GAT
* * * *
26306610 CTTAGA-TGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAACGTGCGGGCGTTCAG
1 CTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTCAG
* * * * * * *
26306674 ACGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCATGCGTGTTGCCGATCT
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCA-CCCGGTCCCCCCTACGTGCTGTCGATCC
* * * * *
26306739 TGCTGTCGCAACCCT-TGATCCGATCTGAT
129 TACTGCCACAACCCTCAG-TCCGGTCTGAT
*
26306768 CTTAGACTGGGGATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
26306795 TTAGACTGGG
Statistics
Matches: 529, Mismatches: 118, Indels: 52
0.76 0.17 0.07
Matches are distributed among these distances:
157 4 0.01
158 253 0.48
159 127 0.24
160 3 0.01
161 1 0.00
162 2 0.00
163 1 0.00
164 2 0.00
165 2 0.00
166 3 0.01
167 2 0.00
168 1 0.00
169 1 0.00
170 6 0.01
171 121 0.23
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCATTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCACCCGGTCCCCCCTACGTGCTGTCGATCCTA
CTGCCACAACCCTCAGTCCGGTCTGAT
Found at i:26306708 original size:171 final size:171
Alignment explanation
Indices: 26306400--26306719 Score: 437
Period size: 171 Copynumber: 1.9 Consensus size: 171
26306390 CCCCTACGTA
* *
26306400 CTGTCGATCCTACTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTTTG
1 CTGTCGATCCTACTGCCACAACCCTCAGTCCGGTCTGAGCTTAGACTGGGAATGAACTCCGTATG
* * ** ** * * *
26306465 CCTAAGTCAACCCATGAAATGAGTGTGCGGGCACTCAGTCGGCCAGAGAGGCATAATGTGCAAGC
66 CCTAAGCCAACCCACGAAACAAACGTGCGGGCACTCAGACGGCCAGAGAGGCAGAATGCGCAAGC
*
26306530 TGGGGATCAGCCCGATCCCTCTTTGCACGCTACCGATCCCG
131 CGGGGATCAGCCCGATCCCTCTTTGCACGCTACCGATCCCG
* * * *
26306571 CTGTCGGTCCTACTGCCACAACCCTCCGTCCGG-CTGGGGCTTAGA-TGTGGAATGTACTCCGTA
1 CTGTCGATCCTACTGCCACAACCCTCAGTCCGGTCT-GAGCTTAGACTG-GGAATGAACTCCGTA
** *
26306634 TGCCTAAGCCAACCCACGAAACAAACGTGCGGGCGTTCAGACGGCCGGAGAGGCAGAATGCGCAA
64 TGCCTAAGCCAACCCACGAAACAAACGTGCGGGCACTCAGACGGCCAGAGAGGCAGAATGCGCAA
26306699 GCCGGGGATCAGCCCGATCCC
129 GCCGGGGATCAGCCCGATCCC
26306720 CCATGCGTGT
Statistics
Matches: 128, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
170 4 0.03
171 124 0.97
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.19
Consensus pattern (171 bp):
CTGTCGATCCTACTGCCACAACCCTCAGTCCGGTCTGAGCTTAGACTGGGAATGAACTCCGTATG
CCTAAGCCAACCCACGAAACAAACGTGCGGGCACTCAGACGGCCAGAGAGGCAGAATGCGCAAGC
CGGGGATCAGCCCGATCCCTCTTTGCACGCTACCGATCCCG
Found at i:26306753 original size:329 final size:316
Alignment explanation
Indices: 26305963--26306794 Score: 884
Period size: 317 Copynumber: 2.6 Consensus size: 316
26305953 CGCTCTGTAT
* * * **
26305963 GCTTAGACATGGAATGAACTCCGTGTACCTAAGCTAACCCACGAAACGAGCGTGCGAGCACTCAG
1 GCTTAGACATGGAATG-ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGTTCAG
* * * * * *
26306028 CCGACTGGAGAGACAGAATGCACAAGCCGGGGATCAACCCGGTCCCCCCTACATGCTGTCGATCC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCC
* * *
26306093 TACT-ACTGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGCATGCATAAGTCA
130 TACTGAC-GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * *
26306157 ACCCACGAAACGAGCGTGCGGGCATTGAACCAGCCGAAGAGGCATAATGCGCAAGCTGGGGATCG
194 ACCCACGAAACGAGCGTGCGGGCACTCAACCAGCCGAAGAGGCATAATGCGCAAGCTGGGGATCA
* *
26306222 GCCCAGTCCCCCTCTACGTGCTGCCGGTCCCGCTACCACAACCCTCAGTCCGGCTGGG
259 GCCCAGTCCCCCGCTACGTGCTGCCGGTCCCACTACCACAACCCTCAGTCCGGCTGGG
* * * * * *
26306280 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTAC-ACGCGTTGA
1 GCTTAGACATGGAATGA-CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGA-GCGTTCA
* * * *
26306344 GCCGGTCGGAGAGGCAGAATGCGCAAGCAGGAGATC-GACCCGGTCCCCCCTACGTACTGTCGAT
64 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGGTCCCCCCTACGTGCTGTCGAT
* * * *
26306408 CCTACTGCCACAACCCTC-AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTTTGCCTAAGT
128 CCTACTGACGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGT
* * * ** * *
26306472 CAACCCATGAAATGAGTGTGCGGGCACTCAGTCGGCC-AGAGAGGCATAATGTGCAAGCTGGGGA
192 CAACCCACGAAACGAGCGTGCGGGCACTCAACCAGCCGA-AGAGGCATAATGCGCAAGCTGGGGA
* * * *
26306536 TCAGCCC-GATCCCTCTTTGCACGCTACCGATCCCGCTGTCGGTCCTACTGCCACAACCCTCCGT
256 TCAGCCCAG-T-CC-C----C-CGCTA-CG-T---GCTGCCGGTCCCACTACCACAACCCTCAGT
26306600 CCGGCTGGG
308 CCGGCTGGG
** * * *
26306609 GCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAACGTGCGGGCGTTCAG
1 GCTTAGACATGGAATG-ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGTTCAG
* * * * * * *
26306674 ACGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCATGCGTGTTGCCGATCT
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCC
* * * * *
26306739 TGCTGTCGCAACCCTTGATCCGATCTGATCTTAGACTGGGGATGAACTCCGTATGC
130 TACTGACGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
26306795 TTAGACTGGG
Statistics
Matches: 419, Mismatches: 73, Indels: 34
0.80 0.14 0.06
Matches are distributed among these distances:
316 5 0.01
317 215 0.51
318 3 0.01
319 1 0.00
323 1 0.00
324 4 0.01
325 2 0.00
326 1 0.00
329 184 0.44
330 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (316 bp):
GCTTAGACATGGAATGACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGTTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTACGTGCTGTCGATCCT
ACTGACGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
CCACGAAACGAGCGTGCGGGCACTCAACCAGCCGAAGAGGCATAATGCGCAAGCTGGGGATCAGC
CCAGTCCCCCGCTACGTGCTGCCGGTCCCACTACCACAACCCTCAGTCCGGCTGGG
Found at i:26306797 original size:26 final size:26
Alignment explanation
Indices: 26306768--26306818 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
26306758 CCGATCTGAT
26306768 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
26306794 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGGATGAACTCCGTAT
26306819 TCCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:26307092 original size:356 final size:352
Alignment explanation
Indices: 26306439--26307573 Score: 1279
Period size: 356 Copynumber: 3.2 Consensus size: 352
26306429 CCGGTCTGAT
* * * ** * * *
26306439 CTTAGACTGGGAATGAACTCCGTTTGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCACTCAGT
1 CTTAGACTGGGGATGAACTCCGTATTCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACTTAGC
* * * * * * * * *
26306504 CGGCCAGAGAGGCATAATGTGCAAGCTGGGGATCAGCCCGATCCCTCTTTGCACGCTACCGATCC
66 CGGTCGGAGAGGCATAATGCGTAAGTTGGGGATCAGCCCG-TCCCCCTTTGCATGCTATCGATCT
* *
26306569 CGCTGTCGGTCCTACTGCCACAACCCTCCGTCCGGCTGGGGCTTAGATGTGGAATGTACTCCGTA
130 CGCTGTCGGTCCTACTGCCACAACCCTCGGTCC-GCTGGGGCTTAGACGTGGAATGTACTCCGTA
* * * *
26306634 TGCCTAAGCCAACCCACGAAACAAACGTGCGGGCGTTCAGACGGCCGGAGAGGCAGAATGCGCAA
194 TGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGTTCAGCCGACCGGAGAGGCAGAATGCGTAA
* * * * * *
26306699 GCCGGGGATCAGCCCGATCCCCCATGCGTGTTGCCGATCTTGCTGTCGCAACCCTTGATCCGATC
259 GCCGGGGATCAGCCTGGTCCCCC-TGCGTGCTGCCGATCCTGCTGTCACAACCCTCGATCCGATC
*
26306764 TGATCTTAGACTGGGGATGAACTCCGTATG
323 TGATCTTAGACTGGGAATGAACTCCGTATG
* *
26306794 CTTAGACTGGGGATGAACTCCGTATTCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGGATGAACTCCGTATTCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACTTAGC
* ** * *
26306859 CAGTCGGAGAGGCATAATGCGTAAGTTAAGGATCAGCCCAGTCCCCCTTCTGCTTGCTGTCGATC
66 CGGTCGGAGAGGCATAATGCGTAAGTTGGGGATCAGCCC-GTCCCCCTT-TGCATGCTATCGATC
* * * * *
26306924 TCGGTGTCGGTCCTACTGACATAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTAATCCGT
129 TCGCTGTCGGTCCTACTGCCACAACCCTCGGTCC-GCTGGGGCTTAGACGTGGAATGTACTCCGT
* * *
26306989 ATGCCTAAGCCAACCCATGTAACGAGCGTGCGGGCGTTCAGCCGACCGGAGAGGCAGAATGCGTA
193 ATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGTTCAGCCGACCGGAGAGGCAGAATGCGTA
* * *
26307054 AGCCGAGGATCAGCCTGGTCCACCCTGCGTGCTGCCGATCCTGCTG-CTACAACCCTGGATCTGA
258 AGCCGGGGATCAGCCTGGTCC-CCCTGCGTGCTGCCGATCCTGCTGTC-ACAACCCTCGATCCGA
** *
26307118 TCCAATCTTAGACTGGGAATGAACTTCGTATG
321 TCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
26307150 CTTAGAATGGGGATGAACTCCGTATCCCTAAGTCAACCAATGAAACGAGCGTGTGGGCACTCAAC
1 CTTAGACTGGGGATGAACTCCGTATTCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACT----
* * * * *
26307215 CGATCAGAGAGGCTGGTCGGAGAGGCATATTGCATAAGTCGGGGATCAGCCCGGT-CCCTTTTGC
62 ---T-----A-GCCGGTCGGAGAGGCATAATGCGTAAGTTGGGGATCAGCCC-GTCCCCCTTTGC
* ** * * * * *
26307279 ATG-TTTCTGATCTCGCTACCAGTCTTGCTGCCACAACTCTCGATCCGACTGGGGCTTAGACGTG
117 ATGCTATC-GATCTCGCTGTCGGTCCTACTGCCACAACCCTCGGTCCG-CTGGGGCTTAGACGTG
* * *
26307343 GAATGTACTTCGTATGCCTAAGCCAACCCCACGAAACAAGCGTGCGGGCATTCAGCC-AGTCGGA
180 GAATGTACTCCGTATGCCTAAGCCAA-CCCACGAAACAAGCGTGCGGGCGTTCAGCCGA-CCGGA
* * * * *
26307407 GAGGCAGAATGTGTAAGCTGGGGATCAGCTTAGTCCCCCCTGCGTGCTGCTGATCCTGCTGTCAC
243 GAGGCAGAATGCGTAAGCCGGGGATCAGCCTGGT-CCCCCTGCGTGCTGCCGATCCTGCTGTCAC
*
26307472 AACCCTCGATCCGATCTGATCTTAGACTGAGAATGAACTCCGTATG
307 AACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
26307518 GTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGG
1 CTTAGACTGGGGATGAACTCCGTATTCCTAAGTCAACCCATGAAACAAGCGTGCGG
26307574 ACGTTCAACC
Statistics
Matches: 652, Mismatches: 105, Indels: 33
0.83 0.13 0.04
Matches are distributed among these distances:
355 94 0.14
356 258 0.40
357 3 0.00
363 1 0.00
366 4 0.01
367 73 0.11
368 180 0.28
369 39 0.06
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (352 bp):
CTTAGACTGGGGATGAACTCCGTATTCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACTTAGC
CGGTCGGAGAGGCATAATGCGTAAGTTGGGGATCAGCCCGTCCCCCTTTGCATGCTATCGATCTC
GCTGTCGGTCCTACTGCCACAACCCTCGGTCCGCTGGGGCTTAGACGTGGAATGTACTCCGTATG
CCTAAGCCAACCCACGAAACAAGCGTGCGGGCGTTCAGCCGACCGGAGAGGCAGAATGCGTAAGC
CGGGGATCAGCCTGGTCCCCCTGCGTGCTGCCGATCCTGCTGTCACAACCCTCGATCCGATCTGA
TCTTAGACTGGGAATGAACTCCGTATG
Found at i:26307160 original size:26 final size:26
Alignment explanation
Indices: 26307124--26307174 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26307114 CTGATCCAAT
* *
26307124 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
26307150 CTTAGAATGGGGATGAACTCCGTAT
1 CTTAGAATGGGAATGAACTCCGTAT
26307175 CCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:26307522 original size:26 final size:26
Alignment explanation
Indices: 26307493--26307543 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26307483 CGATCTGATC
26307493 TTAGACTGAGAATGAACTCCGTATGG
1 TTAGACTGAGAATGAACTCCGTATGG
* *
26307519 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGAGAATGAACTCCGTATG
26307544 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGG
Found at i:26307961 original size:26 final size:26
Alignment explanation
Indices: 26307925--26307977 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26307915 GTTGACCTAG
26307925 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
26307951 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
26307977 G
1 G
26307978 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:26308258 original size:25 final size:26
Alignment explanation
Indices: 26308209--26308260 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
26308199 CCTGTCTGAT
* *
26308209 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26308235 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26308260 C
1 C
26308261 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26309347 original size:26 final size:26
Alignment explanation
Indices: 26309303--26309355 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26309293 CCGGTCTAAT
*
26309303 CTTAGACTGAGAATCAACTCTGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
* * *
26309329 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATCAACTCCGTATG
26309355 C
1 C
26309356 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATCAACTCCGTATG
Found at i:26309984 original size:341 final size:341
Alignment explanation
Indices: 26309341--26309998 Score: 901
Period size: 341 Copynumber: 1.9 Consensus size: 341
26309331 TAGACTGGGG
* * *
26309341 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTCAGCCGATCGAAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAAGCACTCAGCCGACCGAAGAGG
* * * *
26309406 CCAGTCGGAGAGGCATAATGCACAAGCCAGTGATCAGCCTGATCCCTCTTTACATGCTATCGATC
66 CCAGTCGGAGAGGCATAATACACAAGCCAGTGATCAGCCCGATCCCCCTCTACATGCTATCGATC
* * ** * *
26309471 TCGCTGCTGGTACTGCTGCCACAACTCTCGGTCCGACTAGGGCTTAGACGTGGAATGTACTCCGT
131 CCACTGCCAGTACTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACGTGGAATGTACTCCAT
* ** * * *
26309536 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCAATCGGAGAGGCAGAATGCGCA
196 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCAACCGAAGAGGCAGAATGCGCA
* **
26309601 AGCCGAGGATCGACCCGATCCCTCTTACGTGCTATTGATCCTGCTGCCACAACCCTCGATCCGAT
261 AGCAGAGGATCGACCCGATCCCTCTTACGTGCTACCGATCCTGCTGCCACAACCCTCGATCCGAT
26309666 CTGATCTTAGACTGCA
326 CTGATCTTAGACTGCA
* **
26309682 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACTCAGCC-AGCCGAAGAG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAAGCACTCAGCCGA-CCGAAGAG
* * * * *
26309746 GCCGGTCGGAGAGGCATAATACACAAGCCGAG-GATTAGCCCGATCCCCCTCTGCATGTTGTCGA
65 GCCAGTCGGAGAGGCATAATACACAAGCC-AGTGATCAGCCCGATCCCCCTCTACATGCTATCGA
* * *
26309810 TCCCATTGCCAGT-CTTGCTGCCACAACCCTTGGTCCGACTGGGGCTTAGACGTGGAATGTACTC
129 TCCCACTGCCAGTAC-TGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACGTGGAATGTACTC
*
26309874 CATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGAAGAGGCAGAATGC
193 CATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCAACCGAAGAGGCAGAATGC
* * * * *
26309939 GCAAGCAGGGGATCGACCCGGTCCC-CTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC
258 GCAAGCAGAGGATCGACCCGATCCCTCT-TACGTGCTACCGATCCTGCTGCCACAACCCTC
26309999 TATCTAGACT
Statistics
Matches: 274, Mismatches: 39, Indels: 8
0.85 0.12 0.02
Matches are distributed among these distances:
340 4 0.01
341 268 0.98
342 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (341 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAAGCACTCAGCCGACCGAAGAGG
CCAGTCGGAGAGGCATAATACACAAGCCAGTGATCAGCCCGATCCCCCTCTACATGCTATCGATC
CCACTGCCAGTACTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACGTGGAATGTACTCCAT
ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCAACCGAAGAGGCAGAATGCGCA
AGCAGAGGATCGACCCGATCCCTCTTACGTGCTACCGATCCTGCTGCCACAACCCTCGATCCGAT
CTGATCTTAGACTGCA
Found at i:26310042 original size:26 final size:26
Alignment explanation
Indices: 26310003--26310053 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
26309993 ACCCTCTATC
26310003 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
26310029 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
26310054 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:26311070 original size:26 final size:26
Alignment explanation
Indices: 26311034--26311086 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26311024 TCGATCCGAT
26311034 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26311060 CTTAGACTGGGGATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
26311086 C
1 C
26311087 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26313167 original size:159 final size:158
Alignment explanation
Indices: 26312864--26313331 Score: 359
Period size: 159 Copynumber: 2.9 Consensus size: 158
26312854 AGCTCCATTT
* * * * * * *
26312864 GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCAAGAAAACGAGCGTGCAGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACG-AAACGAGCGTACGGGCGCTCA
* * * * * ** * * **
26312929 G-CTAGCCAGAGAGGCAGAATGCGTAAGCCGGGGATC-GACATGGTCCCCCCTGCGTGCTGTTGA
65 GCCGATCGA-AGAGGCAGAATGCGCAAGCCAGGGATCAG-CCCGATCCCCCCTACGTGCTGCCGA
*** * ** * *
26312992 TCGTACTGTCGCAACCCTCGGTTCGGTC-CAA
128 TCCCGCTGCCATAACCCTCAG-TCGGACTCAA
* * * * * *
26313023 TCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * *
26313087 GCCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCTGCCTCTACGTGCTGCCGGT
65 GCCGATCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATC-CCCCCTACGTGCTGCCGAT
* ***
26313152 CCCGCTGCCATAACCCTCAGTCTGACTGGG
129 CCCGCTGCCATAACCCTCAGTCGGACTCAA
* * * *
26313182 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * ** * *
26313247 CCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCC
66 CCGATCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTGCCGATCC
* * **
26313312 TGCTGTCGCAACCCTCAGTC
131 CGCTGCCATAACCCTCAGTC
26313332 CGATTTGATC
Statistics
Matches: 238, Mismatches: 65, Indels: 13
0.75 0.21 0.04
Matches are distributed among these distances:
158 84 0.35
159 153 0.64
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGATCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTGCCGATCC
CGCTGCCATAACCCTCAGTCGGACTCAA
Found at i:26313528 original size:184 final size:184
Alignment explanation
Indices: 26313200--26313544 Score: 494
Period size: 184 Copynumber: 1.9 Consensus size: 184
26313190 ATGGAATGAG
**
26313200 CTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAA
1 CTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAA
* * * * * *
26313265 TGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCGATCCTGCTGTCGCAACCCTCAG
66 TACGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACCGATCCTACTGACACAACCCTCAG
* **
26313330 TCCGATTTGATCTTAGACT-GAGAATGAACTCTGCATCCTTAGACTGGGGATGGA
131 TCCAATCCGATCTTAGACTAGA-AATGAACTCTGCATCCTTAGACTGGGGATGGA
* * *
26313384 CTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGATCGGTGAGGTAGAA
1 CTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAA
* * * **
26313449 TACGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGCTATCGATCTTACTGACACAACCCTTGG
66 TACGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACCGATCCTACTGACACAACCCTCAG
*
26313514 TCTAATCCGATCTTAGACTAGAAATGAACTC
131 TCCAATCCGATCTTAGACTAGAAATGAACTC
26313545 CGTATGCATA
Statistics
Matches: 140, Mismatches: 20, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
184 138 0.99
185 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (184 bp):
CTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGATCGGAGAGGTAGAA
TACGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTACCGATCCTACTGACACAACCCTCAG
TCCAATCCGATCTTAGACTAGAAATGAACTCTGCATCCTTAGACTGGGGATGGA
Found at i:26313896 original size:500 final size:501
Alignment explanation
Indices: 26312846--26313988 Score: 1339
Period size: 500 Copynumber: 2.3 Consensus size: 501
26312836 AATCTTAGAT
* * * * *
26312846 TGGGAATGAGCTCCATTTGCTTAGACATGGAATGAACTCCATATGCCTAAG-CTAACCCAAGAAA
1 TGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCATATGCCTAAGTC-AACCCACG-AA
* * * * * * *
26312910 ACGAGCGTGCAGGTGCTCAG-CTAGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACATGGTC
64 ACGAGCGTGCGGGCGCTCAGCCGA-TCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGGTC
* * * * * ** * * *
26312974 CCCCCTGCGTGCTGTTGATCGTACTGTCGCAACCCTCGGTTCGGTCCAATCTTAGATTGGGAATG
128 CCCCCTACGTGCTATCGATCGTACTGACACAACCCTCGGTTCAATCCAATCTTAGACTAGAAATG
* ** *
26313039 AACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCGTTGAGCCGGTCGAAGAGGCAT
193 AACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACAGGCACTGAGCCAGTCGAAGAGGCAT
* * * *
26313104 AATGCGCAAGCCAGGGATCAGCCCGATCTGCCTCTACGTGCTGCCGGTCCCGCTGCCATAACCCT
258 AATGCGCAAGCCAGGGATCAGCCCGATCTCCCTCTACATGCTGCCGGTCCCGCAGCCACAACCCT
* *
26313169 CAGTCTGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCG
323 CAGTCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCA
* * * * * * * *
26313234 TGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTAC
388 TGAGGGCACTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGAGAATCGGCCCGATCCCCCCTAC
** * * *
26313299 GTGCTGCCGATCCTGCTGTCGCAACCCTCAGTCCGATTTGATCTTAGAC
453 GTGCTAACGATCCTGCTATCGCAACCCTCAGTCCGATTTGATCTAAAAC
* * * * * * * *
26313348 TGAGAATGAACTCTGCATCCTTAGACTGGGGATGGACTCCGTATGCCTAAGTCAACCCACGAAAC
1 TGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAC
* * * * * * *
26313413 GAACGTGCGGGCGCTCAGCCGATCGGTGAGGTAGAATACGCAAGCCGGGGATTGGCCCGGTCCCC
66 GAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGGTCCCC
* * *
26313478 CCTACGTGCTATCGATCTTACTGACACAACCCTTGG-TCTAATCCGATCTTAGACTAGAAATGAA
131 CCTACGTGCTATCGATCGTACTGACACAACCCTCGGTTC-AATCCAATCTTAGACTAGAAATGAA
* * *
26313542 CTCCGTATGCATAAGTGAACCCATGAAACGAGCGTGCAGGCACTGAGCCAGTCGAAGAGGCATAA
195 CTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACAGGCACTGAGCCAGTCGAAGAGGCATAA
* * * * * *
26313607 TGCGTAAGCCGGGGAATGA-CCCGGTC-CCCTTCTGCATGCTGCCGGTCTCGCAGCCACAACCCT
260 TGCGCAAGCCAGGG-ATCAGCCCGATCTCCC-TCTACATGCTGCCGGTCCCGCAGCCACAACCCT
* *
26313670 C-GTCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCA
323 CAGTCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCA
* *
26313734 TGAGGGCACTCAGCC-AGTCGAAGAGGCAGAATGTGCAAGCCGAGAATCGGCTCGATCCCCCCTA
388 TGAGGGCACTCAGCCGA-TCGAAGAGGCAGAATGCGCAAGCCGAGAATCGGCCCGATCCCCCCTA
* ** **
26313798 CGTGCTAACGATCTTGCTATCGCAACCCTTGGTTTG-TTCTGATCTAAAAC
452 CGTGCTAACGATCCTGCTATCGCAACCCTCAGTCCGATT-TGATCTAAAAC
* *
26313848 TGGGAATGAACTCCGTATGCTTAGACTTGGTATGAACTCCATATGCCTAAGTCAACCCACGAAAT
1 TGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAC
* * * * * *
26313913 GAGCTTACGGGCACTCAGCCGATCGGAGAGGCATAATGCGTAAGCCGGGCATCAGCCTGGTCCCC
66 GAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGGTCCCC
*
26313978 CTCTACATGCT
131 C-CTACGTGCT
26313989 GCCGATCCCG
Statistics
Matches: 529, Mismatches: 104, Indels: 17
0.81 0.16 0.03
Matches are distributed among these distances:
499 3 0.01
500 261 0.49
501 213 0.40
502 51 0.10
503 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (501 bp):
TGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGGTCCCC
CCTACGTGCTATCGATCGTACTGACACAACCCTCGGTTCAATCCAATCTTAGACTAGAAATGAAC
TCCGTATGCATAAGTCAACCCACGAAACGAGCGTACAGGCACTGAGCCAGTCGAAGAGGCATAAT
GCGCAAGCCAGGGATCAGCCCGATCTCCCTCTACATGCTGCCGGTCCCGCAGCCACAACCCTCAG
TCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGA
GGGCACTCAGCCGATCGAAGAGGCAGAATGCGCAAGCCGAGAATCGGCCCGATCCCCCCTACGTG
CTAACGATCCTGCTATCGCAACCCTCAGTCCGATTTGATCTAAAAC
Found at i:26314225 original size:26 final size:26
Alignment explanation
Indices: 26314196--26314251 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
26314186 GCGGTCCGAT
*
26314196 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
26314222 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
26314248 CTTA
1 CTTA
26314252 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:26315253 original size:158 final size:158
Alignment explanation
Indices: 26314963--26315454 Score: 426
Period size: 158 Copynumber: 3.1 Consensus size: 158
26314953 GCTTAAACAT
* * * *
26314963 GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGTCGGAG
1 GGAATGAACTCCATATGCATAAGCCAACCCAGGAAACGAGCGTGCGAGCACTCAGCCGGTCGAAG
* ** *
26315028 AGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCAATCCTGTTGCCGCA
66 AGACAGAATGCGCAAGCCAGGGATCGACCCAATCCCCCCTGCGTGCTGTCAATCCTGTTGCCACA
26315093 ACCCTCAGTCCGGTCTGATCTTAGACTG
131 ACCCTCAGTCCGGTCTGATCTTAGACTG
* * * * *
26315121 GGAATGAACTCCGTATGCATAAGTCAACCCAGGAAATGAGCGTGCGAGCGCTGAGCCGGTCGAAG
1 GGAATGAACTCCATATGCATAAGCCAACCCAGGAAACGAGCGTGCGAGCACTCAGCCGGTCGAAG
* * * * *
26315186 AGACATAATGCGCAAGCC-GAGGATCGACCCAATCCCGCGCTGTGTGTTGTCGAT-CTCG-TGCC
66 AGACAGAATGCGCAAGCCAG-GGATCGACCCAATCCC-CCCTGCGTGCTGTCAATCCT-GTTGCC
* * ** *
26315248 ACAACCCTCGGTCCAG-CTGGGGCTTAAACAT-
128 ACAACCCTCAGTCCGGTCT-GATCTTAGAC-TG
* * * * * *
26315279 GGAATGAGCTTCC-TATGCCTAAGCCAACCCATGAAACGGGCGTGCG-GCTACTCAGCCAGT-TA
1 GGAATGAAC-TCCATATGCATAAGCCAACCCAGGAAACGAGCGTGCGAGC-ACTCAGCCGGTCGA
** * * * * *** *
26315341 GAGAGGTAGAATGCACAAGCC-GAGGATCGACCCGATCCCCACTGCGTGCTGTCGATCCCACTAC
64 -AGAGACAGAATGCGCAAGCCAG-GGATCGACCCAATCCCCCCTGCGTGCTGTCAATCCTGTTGC
** * * * **
26315405 CGTAACCCTCGGTCTGATCCAATCTTAGACTG
127 CACAACCCTCAGTCCGGTCTGATCTTAGACTG
26315437 GGAATGAACTCCATATGC
1 GGAATGAACTCCATATGC
26315455 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 55, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
157 24 0.09
158 223 0.84
159 19 0.07
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCATATGCATAAGCCAACCCAGGAAACGAGCGTGCGAGCACTCAGCCGGTCGAAG
AGACAGAATGCGCAAGCCAGGGATCGACCCAATCCCCCCTGCGTGCTGTCAATCCTGTTGCCACA
ACCCTCAGTCCGGTCTGATCTTAGACTG
Found at i:26315457 original size:26 final size:26
Alignment explanation
Indices: 26315428--26315483 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
26315418 CTGATCCAAT
26315428 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* **
26315454 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26315480 CTTA
1 CTTA
26315484 AGTCAACCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26315956 original size:159 final size:159
Alignment explanation
Indices: 26315697--26316069 Score: 384
Period size: 159 Copynumber: 2.4 Consensus size: 159
26315687 AATCGGCTAG
* * * * ** *
26315697 AGAGGTAGAATGCGTAAGCCGAGG-ATCGGCCCGGTCCCCCTTACGTGCTATCGATCTTGCTGCC
1 AGAGGCAGAATGCGTAAGCCGAGGAATCGACCCGATCCCCCTTACGTGCTACCGATCCCGCAGCC
* * * * * *
26315761 ACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAATTTCGTACGCATAAGTCAACCCATGA
66 ACAACCCTCGGTCTGAGCTGAGCTTAGACTGGGAATGAACTCCCTACGCATAAGGCAACCCATGA
* *
26315826 AACGAGCGTGCAGGCACTGAG-CAGACCGA
131 AACGAGCATGCAGGCACTCAGCCAG-CCGA
* *
26315855 AGAGGCATAATGCGTAAGCCGAGGAAT-GACCCGATCCCCCTCTACGTGCTGCC-AGTCCCGCAG
1 AGAGGCAGAATGCGTAAGCCGAGGAATCGACCCGATCCCCCT-TACGTGCTACCGA-TCCCGCAG
* * * * *
26315918 CTACAACCCTCGGTCT-AGCTGGGGCTTAGACAT-GGAATGAGCTCCCTATGCCTAAGGCAACCC
64 CCACAACCCTCGGTCTGAGCT-GAGCTTAGAC-TGGGAATGAACTCCCTACGCATAAGGCAACCC
* *
26315981 ATGAAACGGGCATGCGGGCACTCAGCCAGCCGA
127 ATGAAACGAGCATGCAGGCACTCAGCCAGCCGA
* * * *
26316014 AGAGGCAGAATGCGTAAGCCGAGG-ATCGGCTCGATCCCACC-TGCGTGCTACTGATC
1 AGAGGCAGAATGCGTAAGCCGAGGAATCGACCCGATCCC-CCTTACGTGCTACCGATC
26316070 TTGCTACTAC
Statistics
Matches: 176, Mismatches: 30, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
158 50 0.28
159 120 0.68
160 6 0.03
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.18
Consensus pattern (159 bp):
AGAGGCAGAATGCGTAAGCCGAGGAATCGACCCGATCCCCCTTACGTGCTACCGATCCCGCAGCC
ACAACCCTCGGTCTGAGCTGAGCTTAGACTGGGAATGAACTCCCTACGCATAAGGCAACCCATGA
AACGAGCATGCAGGCACTCAGCCAGCCGA
Found at i:26316269 original size:184 final size:183
Alignment explanation
Indices: 26315941--26316389 Score: 476
Period size: 184 Copynumber: 2.4 Consensus size: 183
26315931 TCTAGCTGGG
* * * * * * *
26315941 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGGCAACCCATGAAACGGGCATG-CGGGCACTCA
1 GCTTAGACTTGGGATGAACTCCATATGCCTAAGCCAACCCACGAAAC-GG-ATGTCGGGCGCTCA
* * * * * *
26316005 GCC-AGCCGAAGAGGCAGAATGCGTAAGCCGAGGATCGGCTCGATCCCACCTGCGTGCTACTGAT
64 GCCGA-CCGAAGAGGCAGAATGCGTAAGCCAAGGATCGGCCCGATCCCACCTACATGCAACCGAT
* * * * *
26316069 CTTGCTACTACAACCCTTGGTCCGATTCGATCTAAAACTGGGAATGAACTCCGTAT
128 CCTGCTACTACAACCCTCGATCCGATCCGATCTAAAACTGAGAATGAACTCCGTAT
26316125 GCTTAGACTTGGGATGAACTCCATATGCCTAAGCCAACCCACGAAACGGATGTACGGGCGCTCAG
1 GCTTAGACTTGGGATGAACTCCATATGCCTAAGCCAACCCACGAAACGGATGT-CGGGCGCTCAG
* * * * * *
26316190 CCGACCGAAGAGGCAGATTGTGTAAGCCAAGGATTGGCCCGGTCCCCCCTACATTCAACCGATCC
65 CCGACCGAAGAGGCAGAATGCGTAAGCCAAGGATCGGCCCGATCCCACCTACATGCAACCGATCC
* * * *
26316255 TGCT-GTCGCAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACTCCGTAT
130 TGCTACT-ACAACCCTCGATCCGATCCGATCTAAAACTGAGAATGAACTCCGTAT
* * * * * *
26316309 GCTTAGA-TTGGGGATGAACTCCGTATGCCTGAGTCAACCCACGAAAC-GAGCGTGCGGACGGTC
1 GCTTAGACTT-GGGATGAACTCCATATGCCTAAGCCAACCCACGAAACGGA-TGT-CGGGCGCTC
*
26316372 AGCCGACCAAAGAGGCAG
63 AGCCGACCGAAGAGGCAG
26316390 GATGTGCAAG
Statistics
Matches: 223, Mismatches: 36, Indels: 12
0.82 0.13 0.04
Matches are distributed among these distances:
182 3 0.01
183 7 0.03
184 212 0.95
185 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (183 bp):
GCTTAGACTTGGGATGAACTCCATATGCCTAAGCCAACCCACGAAACGGATGTCGGGCGCTCAGC
CGACCGAAGAGGCAGAATGCGTAAGCCAAGGATCGGCCCGATCCCACCTACATGCAACCGATCCT
GCTACTACAACCCTCGATCCGATCCGATCTAAAACTGAGAATGAACTCCGTAT
Found at i:26316313 original size:26 final size:26
Alignment explanation
Indices: 26316284--26316336 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26316274 CCGATCCGAT
26316284 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* * *
26316310 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
26316336 C
1 C
26316337 CTGAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:26317477 original size:26 final size:26
Alignment explanation
Indices: 26317426--26317478 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26317416 CCAAATTGAT
*
26317426 CTTAGATTGGGAATGAACTTCATATG
1 CTTAGATTGGGAATGAACTCCATATG
* *
26317452 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
26317478 C
1 C
26317479 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:26318145 original size:26 final size:26
Alignment explanation
Indices: 26318109--26318161 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26318099 CTAGTTCGAT
26318109 CTTAGATTGGGAATGAAC-TCTGTATG
1 CTTAGATTGGGAATGAACTTC-GTATG
*
26318135 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTTCGTATG
26318161 C
1 C
26318162 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTTCGTATG
Found at i:26319700 original size:158 final size:156
Alignment explanation
Indices: 26319199--26319700 Score: 474
Period size: 158 Copynumber: 3.2 Consensus size: 156
26319189 GCTCCGTATG
* * **
26319199 CTTAGACATGGAATGAACTCCGTGTGCCTAAGCCAACTTACGAAACGAGCATGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGCGCTCAAC
* * * * * *
26319264 CGACTGGAGAGGCAGAATGCGCAAG-TCGGGGCTCGACCTGGCCCCCCCTTGCGTGCTGTCGATC
66 CGAC-CGAGAGGCAGAATGCGCAAGCT-GGGGATCGGCCTGGTCCCCTC-TGCGTGCTGCCGATC
* * *
26319328 CTACTACCGTAACCCTCGGTCCGGTCCGAT
128 CTACTGCCGCAACCCTCGGTCC-GTCTGAT
* * * * * * *
26319358 CTTACAC-TAGGAATGAACTCTGTATGCATAAGTTAACCCACGAAACGAGCGTGCGGGCACTAAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGCGCTCAA
* * * * *
26319422 CCAACCGAAGAGGCATAATGCGCAAGC-GGGGATCGGCCTGGTCCCCCTCTACGTGCTACCGGTC
65 CCGACCG-AGAGGCAGAATGCGCAAGCTGGGGATCGGCCTGGT-CCCCTCTGCGTGCTGCCGATC
* * * **
26319486 CTGCTGCCACAACCCTCGGTCCGGCTGGGG
128 CTACTGCCGCAACCCTCGGTCCGTCT-GAT
** * * *
26319516 CTTAGACATGGAATGAGTTCCCTATGCCTAAGCTAACCCACGAAACGAGCATG-TGGCTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGC-GCTCAA
* * * *
26319580 CCGGCCAGACAGGCAGAATGCGTAAGCTGGGGATCGGCCCGGTCCCCTCTGCGTGCTGCCGATCC
65 CCGACC-GAGAGGCAGAATGCGCAAGCTGGGGATCGGCCTGGTCCCCTCTGCGTGCTGCCGATCC
* * *
26319645 TATTGCCGCAACCCTCGATCCAATCTGAT
129 TACTGCCGCAACCCTCGGTCC-GTCTGAT
*
26319674 CTTAGAC-TGGGAACGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
26319701 TTAGATTGGG
Statistics
Matches: 269, Mismatches: 63, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
157 6 0.02
158 168 0.62
159 95 0.35
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCATGCGGGCGCTCAAC
CGACCGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCTGGTCCCCTCTGCGTGCTGCCGATCCTA
CTGCCGCAACCCTCGGTCCGTCTGAT
Found at i:26320078 original size:26 final size:26
Alignment explanation
Indices: 26320042--26320094 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26320032 CCGGTTTGAT
*
26320042 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26320068 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26320094 C
1 C
26320095 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26320794 original size:26 final size:26
Alignment explanation
Indices: 26320765--26320817 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26320755 GGCTCAAAAT
*
26320765 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
26320791 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26320817 C
1 C
26320818 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26321291 original size:26 final size:26
Alignment explanation
Indices: 26321255--26321307 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26321245 CCGATCCGAT
*
26321255 CTTAAACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
26321281 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
26321307 C
1 C
26321308 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:26321653 original size:26 final size:26
Alignment explanation
Indices: 26321624--26321676 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26321614 CCGGTCTGAT
*
26321624 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26321650 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
26321676 C
1 C
26321677 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26326522 original size:26 final size:26
Alignment explanation
Indices: 26326471--26326523 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26326461 CCAGTCTGAT
* *
26326471 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
26326497 CTTAGACTCGGG-ATGAACTCTATATG
1 CTTAGACT-GGGAATGAACTCTATATG
26326523 C
1 C
26326524 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:26326779 original size:684 final size:684
Alignment explanation
Indices: 26325312--26326794 Score: 1700
Period size: 684 Copynumber: 2.2 Consensus size: 684
26325302 AGCTCTGTAT
* * * * *
26325312 GCTTAGACATGGAATGAACTCTGTATGACTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTTAG
*
26325377 CTGGCCAGAGAGGCAGAATGCGCAAG-TCGAAGATCAACCCGGTCCCCCCTACATGCTGTCGATC
66 CT-GCCAGAGAGGCAGAATGCGCAAGCTCGAGGATCAACCCGGTCCCCCCTACATGCTGTCGATC
* * * * * *
26325441 TTGCTACTACAACCCTCGATCCGGTCTGATCTTAGATTGAGAATGAACTCTGTATGCAGAAGTCA
130 CTACTACTACAACCCTCGATCCGATCTAATCTTAGACTGAGAATGAACTCCGTATGCAGAAGTCA
* * * *
26325506 ACCCATGAAACAAACGTGCGGGCGCTGAGCCGACCAAAGCGACATAATGTGCAAACGGGGATCGA
195 ACCCACGAAACAAACGTGCGGGCGCTGAGCCGACCAAAGAGACATAATGAGCAAACGAGGATCGA
* ** *
26325571 CCCGGTCCCCCTCTGCGTGCTGCCCATCCCGCTGCCACAACCCTTGGTCTGGCTGGGACTTAGAC
260 CCCGGTCCCCCTCTACGTGCTGCCCATCCCGCTGCCACAACCCTCAGTCCGGCTGGGACTTAGAC
* * * * *
26325636 ATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGACCGA
325 ATGGAATAAGCTCCCTATGCCTAAACCAAACCACGAAACGGGCCTGCAGGCGCTCAGCCGACCGA
* * * * * *
26325701 AGAGGCTGAATGCGCAAGCCGGGGATCGGCCCGGTACACCCTGTGTACCGTCGATCCTGCTGCTG
390 AGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATACACCCTGTGTACCGCCAATCCTGCTGCTG
* ** * * * * *
26325766 CAGCTTTCGGTTCGATTCGATCTTAGATTGGGAATGAACTCCATACGCTTAAATTACGGATGAAC
455 CAACCCTCAGTTCCAGTCGATCTTAGACTGGGAATGAACTCCATACGCTTAAACTACGGATGAAC
* * * * * * *
26325831 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGGATGAAGAGGTCTGCC
520 TCCATATGCCTAAGTCAACCCAGGAAACGAGCATGCAGACACTTAGCCGGATGAAGAGGTCCGCC
* *
26325896 AGAGAGGCATAATGTGCAAGCCGGGGATCAGCCCGATCCCCTTCTACATGCCATCGATCCCGTTA
585 AGAGAGGCATAATGTGCAAGCCGGGGATCAGCCCGATCCCCCTCTACATGCCATCGATCCCGCTA
26325961 CCGGTCCTACTGCCACAACCCTCAGTCCGACTGAG
650 CCGGTCCTACTGCCACAACCCTCAGTCCGACTGAG
* *
26325996 GCTTAGACATGGAATGTACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGAGGGCACTTAG
1 GCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTTAG
* * * * * ** *
26326061 TCGGCCAGAGAGGTAGAATGCACAA-CTCGAGGATCGACTCGGTCCCCTTTACGTGCTGTCGATC
66 -CTGCCAGAGAGGCAGAATGCGCAAGCTCGAGGATCAACCCGGTCCCCCCTACATGCTGTCGATC
* * * * * *
26326125 CTACTGA-TGCAACCCTCGGT-CTATCTAATTTTAGACTGGGAATGAACTCCGTATGCATAAGTC
130 CTACT-ACTACAACCCTCGATCCGATCTAATCTTAGACTGAGAATGAACTCCGTATGCAGAAGTC
* * * * * * * *
26326188 AACCCACGAAACGAGCGTGCGGGTGTTGAGCTGACCGAAGAGGCATAATGAGCAAGCCGAGGATC
194 AACCCACGAAACAAACGTGCGGGCGCTGAGCCGACCAAAGAGACATAATGAGCAA-ACGAGGATC
* * *
26326253 -AGCTCGGTCCCCCTCTATGTGCTG-TCAGTCCCGCTGCCACAACCCTCAGTCCGGCTGGCG-CT
258 GA-CCCGGTCCCCCTCTACGTGCTGCCCA-TCCCGCTGCCACAACCCTCAGTCCGGCTGG-GACT
* *
26326315 TAGACATGGAATAAGCTCCCTATGCCTAAACCAAACCACGAAACGGGCCTGCAGGTGCTCAGCTG
320 TAGACATGGAATAAGCTCCCTATGCCTAAACCAAACCACGAAACGGGCCTGCAGGCGCTCAGCCG
* * * * * *
26326380 GCTGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGAT-CCCCTCTGTGTGCTGCCAATCCTG
385 ACCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATACACC-CTGTGTACCGCCAATCCTG
*** * *
26326444 CTG-TCGCAACCCTCAG-TCCAGTCTGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACT-C
449 CTGCT-GCAACCCTCAGTTCCAGTC-GATCTTAGACTGGGAATGAACTCCATACGCTTAAACTAC
* * * *
26326506 GGGATGAACTCTATATGCCTAAGTCAACCCAGGAACCGAGCATTCAGACACTTAG-CTGATCGAA
512 -GGATGAACTCCATATGCCTAAGTCAACCCAGGAAACGAGCATGCAGACACTTAGCCGGAT-GAA
* * * **
26326570 GAGG-CCGATCGGAGAGGCATAATGCT-CAAGCCGGGGATCTGCCCGATCCCCCTCTACATGCTG
575 GAGGTCCG-CCAGAGAGGCATAATG-TGCAAGCCGGGGATCAGCCCGATCCCCCTCTACATGCCA
** * * *
26326633 TCGATCCCGCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGG
638 TCGATCCCGCTACCGGTCCTACTGCCACAACCCTCAGTCCGACTGAG
* * * * * *
26326680 GCTTAGACATGGAATGTACTCCGAATGCCTAAGCCAACCCATGAAACGAGTGCGAGGGTGCTCAG
1 GCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTTAG
* * * ***
26326745 CTGACAGGAGAGGCAAAATACGCAAGCT-GAGGATCTGTCCGGTCCCCCCT
66 CTGCCA-GAGAGGCAGAATGCGCAAGCTCGAGGATCAACCCGGTCCCCCCT
26326795 GCGTGTAGCC
Statistics
Matches: 661, Mismatches: 122, Indels: 32
0.81 0.15 0.04
Matches are distributed among these distances:
683 103 0.16
684 552 0.84
685 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (684 bp):
GCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGAGGGCGCTTAG
CTGCCAGAGAGGCAGAATGCGCAAGCTCGAGGATCAACCCGGTCCCCCCTACATGCTGTCGATCC
TACTACTACAACCCTCGATCCGATCTAATCTTAGACTGAGAATGAACTCCGTATGCAGAAGTCAA
CCCACGAAACAAACGTGCGGGCGCTGAGCCGACCAAAGAGACATAATGAGCAAACGAGGATCGAC
CCGGTCCCCCTCTACGTGCTGCCCATCCCGCTGCCACAACCCTCAGTCCGGCTGGGACTTAGACA
TGGAATAAGCTCCCTATGCCTAAACCAAACCACGAAACGGGCCTGCAGGCGCTCAGCCGACCGAA
GAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATACACCCTGTGTACCGCCAATCCTGCTGCTGC
AACCCTCAGTTCCAGTCGATCTTAGACTGGGAATGAACTCCATACGCTTAAACTACGGATGAACT
CCATATGCCTAAGTCAACCCAGGAAACGAGCATGCAGACACTTAGCCGGATGAAGAGGTCCGCCA
GAGAGGCATAATGTGCAAGCCGGGGATCAGCCCGATCCCCCTCTACATGCCATCGATCCCGCTAC
CGGTCCTACTGCCACAACCCTCAGTCCGACTGAG
Found at i:26327459 original size:26 final size:26
Alignment explanation
Indices: 26327430--26327482 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26327420 GGCTCAAAAT
* *
26327430 CTTAGAC-TGGGAATGAGCTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
26327456 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26327482 C
1 C
26327483 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26327516 original size:21 final size:21
Alignment explanation
Indices: 26327490--26327531 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
26327480 TGCCTAAGCC
26327490 AACCCACGAAACGAGCATGCG
1 AACCCACGAAACGAGCATGCG
**
26327511 AACCCACGAAATTAGCATGCG
1 AACCCACGAAACGAGCATGCG
26327532 GGCGCTCAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.31, G:0.21, T:0.10
Consensus pattern (21 bp):
AACCCACGAAACGAGCATGCG
Found at i:26327820 original size:159 final size:158
Alignment explanation
Indices: 26327635--26327978 Score: 397
Period size: 159 Copynumber: 2.2 Consensus size: 158
26327625 CCGGTCCGAT
* * * * * *
26327635 CTTAGACTGGAAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCACGCAGG-CACTGAG
1 CTTAGACTGGAAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCAAGC-GGCCACTCAA
* * *
26327699 CCAACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTCTGTGTGCTGTCGATC
65 CCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCC-CTGCGTGCTGCCGATC
* *
26327764 CCGCTGCCACAACCCTCGGTCCGACTGGGG
129 CCACTACCACAACCCTCGGTCCGACTGGGG
* * * *
26327794 CTTAGACATGG-AATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGGGCAAGCGGCCGCTCAA
1 CTTAGAC-TGGAAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCAAGCGGCCACTCAA
* * * *
26327858 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTGCCGATCC
65 CCAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCTGCCGATCC
* ** **
26327923 TACTACTTCAACCCTCGGTCCGATCT-GAT
130 CACTACCACAACCCTCGGTCCGA-CTGGGG
* *
26327952 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGAAATGAACTCCCTATGC
26327979 TTAGACTGGG
Statistics
Matches: 155, Mismatches: 26, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
157 3 0.02
158 57 0.37
159 92 0.59
160 3 0.02
ACGTcount: A:0.24, C:0.33, G:0.26, T:0.17
Consensus pattern (158 bp):
CTTAGACTGGAAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCAAGCGGCCACTCAAC
CAACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCGTGCTGCCGATCCC
ACTACCACAACCCTCGGTCCGACTGGGG
Found at i:26328361 original size:26 final size:26
Alignment explanation
Indices: 26328320--26328372 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26328310 CCAGTCTGAT
*
26328320 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26328346 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
26328372 C
1 C
26328373 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26329079 original size:26 final size:26
Alignment explanation
Indices: 26329042--26329091 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
26329032 GCTGAAAATG
* *
26329042 TTAGACTGGGAATGAGCTTCGTATTC
1 TTAGACTGGGAATGAACTCCGTATTC
26329068 TTAGACAT-GGAATGAACTCCGTAT
1 TTAGAC-TGGGAATGAACTCCGTAT
26329092 GCCTAAGCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATTC
Found at i:26329430 original size:159 final size:158
Alignment explanation
Indices: 26329067--26329499 Score: 437
Period size: 159 Copynumber: 2.7 Consensus size: 158
26329057 GCTTCGTATT
* * *
26329067 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAACGAGCGTGCGGGCGCTCG-G
1 CTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCT-GAG
* * * * * * *
26329131 CCGGTCGGAGCGGTAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCCGTCGATCT
65 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTACATGCCGCCGATCT
* ** * *
26329196 TGCTACCAAAACCCTTGGTTCGATCTGAT
130 CGCTACCAAAACCCTCAGTTCGAGCTGAG
* * * *
26329225 CTTAGAC-TAGGAATGAGCTCCGTATGCATAAGTCAACCCACGAAATGAACGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAGCTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGAG
* * * ** *
26329289 CCGGTCGAAGAGGCATAATGCGTAAGCCGGGGATCGACCCGGTCCCCTTCTTTATGCTGCC-AGT
65 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCC-CCTACATGCCGCCGA-T
* * *
26329353 CTCGCTGCCACAACCCTCAG-TCTG-GCTAGGG
128 CTCGCTACCAAAACCCTCAGTTC-GAGCT-GAG
* * *** *
26329384 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCAAACGCTCAGC
1 CTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
* *
26329449 C-GACTGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTAC
66 CGGTC-GGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTAC
26329500 GTGCTGTCGT
Statistics
Matches: 222, Mismatches: 45, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 102 0.46
159 117 0.53
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
CTTAGACATGGAATGAGCTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
CGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCCCCTACATGCCGCCGATCTC
GCTACCAAAACCCTCAGTTCGAGCTGAG
Found at i:26329939 original size:26 final size:26
Alignment explanation
Indices: 26329898--26329950 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26329888 TTGGTTTGAT
26329898 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
26329924 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26329950 C
1 C
26329951 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26333585 original size:26 final size:26
Alignment explanation
Indices: 26333547--26333599 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26333537 ATGGCAAAAT
* *
26333547 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26333573 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
26333599 C
1 C
26333600 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26333760 original size:26 final size:26
Alignment explanation
Indices: 26333731--26333783 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26333721 CCGGTCTGAT
26333731 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26333757 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26333783 C
1 C
26333784 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26334553 original size:26 final size:26
Alignment explanation
Indices: 26334524--26334576 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26334514 CCGGTCTGAT
*
26334524 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26334550 CTTAGACTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26334576 C
1 C
26334577 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26334682 original size:26 final size:26
Alignment explanation
Indices: 26334653--26334705 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26334643 GGCTCAAAAT
*
26334653 CTTAGAC-TGGAAATGAGCTCCGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
26334679 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26334705 C
1 C
26334706 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26335024 original size:26 final size:26
Alignment explanation
Indices: 26334995--26335045 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
26334985 CGGTCTGATG
26334995 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
26335021 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
26335046 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:26336843 original size:26 final size:26
Alignment explanation
Indices: 26336807--26336859 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26336797 CTGGTTTGAT
26336807 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26336833 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26336859 C
1 C
26336860 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26337340 original size:26 final size:26
Alignment explanation
Indices: 26337289--26337341 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26337279 CCAATTCGAT
*
26337289 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26337315 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
26337341 C
1 C
26337342 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26338557 original size:26 final size:26
Alignment explanation
Indices: 26338528--26338580 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26338518 CCGGTCTGAT
26338528 CTTAGACTAGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
* * * *
26338554 CTTAGTCTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
26338580 C
1 C
26338581 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:26338939 original size:26 final size:26
Alignment explanation
Indices: 26338900--26338950 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26338890 CTGATCTTAA
26338900 ACTGGGAATAAACTCCGTATGCCTAG
1 ACTGGGAATAAACTCCGTATGCCTAG
* *
26338926 ACTGGGGATGAACTCCGTATGCCTA
1 ACTGGGAATAAACTCCGTATGCCTA
26338951 AGTCAACCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (26 bp):
ACTGGGAATAAACTCCGTATGCCTAG
Found at i:26338945 original size:367 final size:363
Alignment explanation
Indices: 26338337--26339636 Score: 1367
Period size: 367 Copynumber: 3.6 Consensus size: 363
26338327 TGTGCTACCA
* * * * ** ** *
26338337 GTCCCGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATG-AGCTCCCAATGTCTAA
1 GTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGATGTGGAATGTA-CTCCGTATGCCTAA
* * * * * ** * *
26338401 GCCAACCCATGAAATGGGCATGCAGGG-GCCCAGCCCG-CGGGAAAGGCAGAATGCGCAAG-CTG
65 GCCAACCCATGAAACGAGCGTTC-GGGCGCTCAATCGGTC-GGAAAGGCAGAATGCACAAGTC-G
* * *
26338463 GGGATCGGCTTGGTCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCAGTCCGGTCTGAT
127 GGGATCGGCTCGGTCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCAATCCGGTCTGAT
* *
26338528 CTTAGACTAGGAATGAACTCCGCATGCTTAGTCTGGGGATGAACTCCGTATGCCTAAGTCAACCC
192 CTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* *
26338593 ATAAAACGAGCGTGCGGGTACTCAGCCGGCTGGAAGAGCCAGTCGGAGAGGCATAATGTGCAAGT
257 ACAAAACGAGCAT-CGGG-ACTCAGCCGGCTGG-AGAGCC-G-CGGAGAGGCATAATGTGCAAGT
*
26338658 CGAGGATCAACCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGTCG
317 CGAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGTCG
* * * * * * * * *
26338705 GTCCTACTACCATAACCTTCTGTCCGACTGAGGCTTAGACGTGGAATGTGCTTCGT-TGCCTAAA
1 GTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAG
* * * *
26338769 CCAACCCATAAAACGAACGTTCGGGCGCTCAACCGGTCGAAAAGGCAGAATGCACAAGTCGGGGA
66 CCAACCCATGAAACGAGCGTTCGGGCGCTCAATCGGTCGGAAAGGCAGAATGCACAAGTCGGGGA
* * * * * * *
26338834 TCGGCCCGGTCCACCCTGCGTGCTATCGATCTTGCTGTCGTAACCTTCAATCCAGTCTGATCTTA
131 TCGGCTCGGTCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCAATCCGGTCTGATCTTA
* * * *
26338899 AACTGGGAATAAACTCCGTATGCCTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAA
196 GACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAA
* * * *
26338964 AACGAGCATACGGGCACTTAGCCGACTGGAGAGGCCTGCCGGAGAGGCATAATGCGCAAGTCGGG
261 AACGAGCAT-CGGG-ACTCAGCCGGCTGGAGA-GCC-G-CGGAGAGGCATAATGTGCAAGTCGAG
* * * * * * *
26339029 GATTAGCCCGGTCCCTCTCAGCGTGCTGTCGATCTCGCTGCCA
321 GATCAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGTCG
* *
26339072 GTCCTGCTACCACAACCCTCGGTCCAATTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAG
1 GTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAG
* * * * * * *
26339137 CCAACCCATGAAATGAGC-TTGCAGGCGCTCAGTCAGTCGGAGAGGCAGAATGCACAAGTTGAGG
66 CCAACCCATGAAACGAGCGTT-CGGGCGCTCAATCGGTCGGAAAGGCAGAATGCACAAGTCGGGG
* * *
26339201 ATCGGCTCGGTCCCCCCTGCGTGCTACCGATCCTGCTG-CTGCAACCCTCCATCTGGTTTGATCT
130 ATCGGCTCGGTCCCCCCTGCGTGCTACCGATCCTGCTGTC-GCAACCCTCAATCCGGTCTGATCT
* * *
26339265 TAGACTAGGAATGAACTCCGTATGTTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCAC
194 TAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* ** * * * * **
26339330 GAAACGAGCATATGGA--C-GCTCAG-T--CG-G-C-CGGAAAGGCATAATGTGCGAGAAGAGGA
259 AAAACGAGCATCGGGACTCAGC-CGGCTGGAGAGCCGCGGAGAGGCATAATGTGCAAGTCGAGGA
* **
26339386 TCAGCCCGATCCCCCTCTGTGTGCTGTCGATCCTACTGTCG
323 TCAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGTCG
* **
26339427 GTCTTGCTACCACAACCCTCGGTTTGACTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAG
1 GTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAG
* * * *
26339492 CCAACCCATGAAACGAGCGTGT-GGGCGCT-AAGTCGATCGGAGAGGCAGAATGCGCAAGCCGGG
66 CCAACCCATGAAACGAGCGT-TCGGGCGCTCAA-TCGGTCGGAAAGGCAGAATGCACAAGTCGGG
** * * * ** * *
26339555 GATAAGCTCGGTCCTCCCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCTGATCTGATCT
129 GATCGGCTCGGTCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCAATCCGGTCTGATCT
26339620 TAGACTAGGAATGAACT
194 TAGACTAGGAATGAACT
26339637 TCGCATGCAT
Statistics
Matches: 777, Mismatches: 142, Indels: 39
0.81 0.15 0.04
Matches are distributed among these distances:
354 1 0.00
355 233 0.30
356 2 0.00
357 1 0.00
358 1 0.00
359 1 0.00
361 1 0.00
363 3 0.00
364 1 0.00
366 7 0.01
367 305 0.39
368 221 0.28
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (363 bp):
GTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAG
CCAACCCATGAAACGAGCGTTCGGGCGCTCAATCGGTCGGAAAGGCAGAATGCACAAGTCGGGGA
TCGGCTCGGTCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCAATCCGGTCTGATCTTA
GACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAA
AACGAGCATCGGGACTCAGCCGGCTGGAGAGCCGCGGAGAGGCATAATGTGCAAGTCGAGGATCA
GCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGTCG
Found at i:26339304 original size:26 final size:26
Alignment explanation
Indices: 26339264--26339314 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26339254 TGGTTTGATC
*
26339264 TTAGACTAGGAATGAACTCCGTATGT
1 TTAGACTAGGAATGAACTCCATATGT
*
26339290 TTAGACTAGGGATGAACTCCATATG
1 TTAGACTAGGAATGAACTCCATATG
26339315 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGT
Found at i:26339940 original size:159 final size:157
Alignment explanation
Indices: 26339468--26339962 Score: 478
Period size: 159 Copynumber: 3.1 Consensus size: 157
26339458 GGCTTAGATG
* * ** * *
26339468 TGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTAAGTCGATCGGA
1 TGGAATG-ACTCCCTATGCCTAAGCCAACCCATGAAAAGAGCGTACGGGCGCTAAGCCGGTCGGA
* * * * * * *
26339533 GAGGCAGAATGCGCAAGCCGGGGATAAGCTCGGTCCTCC-CTGCGTGCTACCGATCCTGCTGCCA
65 GAGGCAGAATGAGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATCCTGCTGTCG
*
26339597 CAACCCTCGGTCTGATCTGATCTTAGAC
130 CAACCCTCGGTCTGGTCTGATCTTAGAC
* * * * * *
26339625 TAGGAATGAACTTCGC-ATGCATAAGTCAACCCATGAAATGAGCGTACGGGTGCTAAGCCAGTCG
1 T-GGAATG-AC-TCCCTATGCCTAAGCCAACCCATGAAAAGAGCGTACGGGCGCTAAGCCGGTCG
* * * * * * * * * * *
26339689 AAGAGGTATAATGAGCAAGCCGAGGATC-GACCCGATCTCTCTCTGCATGCTGCCGGTCCCGCTA
63 GAGAGGCAGAATGAGCAAGCCGGGGATCAG-CCCGATCCCCCTCTGCGTGCTACCGATCCTGCTG
**
26339753 T-GACAACCCTCGGTCTGGT-TGGGGCTTAGAC
127 TCG-CAACCCTCGGTCTGGTCT-GATCTTAGAC
* * * *
26339784 ATGGAATGAGCTCCCTATGCCTTAGCCAACCCATGAAAAGGGCGTACGGGCGCTCAGCCGGCCGG
1 -TGGAATGA-CTCCCTATGCCTAAGCCAACCCATGAAAAGAGCGTACGGGCGCTAAGCCGGTCGG
*
26339849 AGAGGCAGAATGAGCAAGTCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATCCTGCTGTC
64 AGAGGCAGAATGAGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATCCTGCTGTC
* *
26339914 GCAACCTTCGGTCCGGTCTGATCTTAGAC
129 GCAACCCTCGGTCTGGTCTGATCTTAGAC
* *
26339943 TAAGAATGAACTCCATATGC
1 T-GGAATG-ACTCCCTATGC
26339963 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 61, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
157 2 0.01
158 81 0.31
159 175 0.67
160 5 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.20
Consensus pattern (157 bp):
TGGAATGACTCCCTATGCCTAAGCCAACCCATGAAAAGAGCGTACGGGCGCTAAGCCGGTCGGAG
AGGCAGAATGAGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATCCTGCTGTCGC
AACCCTCGGTCTGGTCTGATCTTAGAC
Found at i:26340331 original size:25 final size:26
Alignment explanation
Indices: 26340292--26340340 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
26340282 CAGTCCGATC
26340292 TTAGACTGGGAATGAAC-CCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
26340317 TTAGACTGAGG-ATGAACTCCGTAT
1 TTAGACTG-GGAATGAACTCCGTAT
26340341 TCCTAAGTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:26340631 original size:354 final size:354
Alignment explanation
Indices: 26339755--26340619 Score: 1008
Period size: 354 Copynumber: 2.4 Consensus size: 354
26339745 TCCCGCTATG
* * * * *
26339755 ACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTTAGCCAACCCATG
1 ACAACCCTCGGTCTGGCTAGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAACCCATG
* * * *
26339819 AAA-AGGGCGTACGGGCGCTCAGCCGGCCGGAGAGGCAGAATG-AGCAAGTCGGGGATC-AGCCC
65 AAACA-AGCGTGCGGGCGCTCAG-CGACCGGAGAGGCAGAATGCA-CAAGTCGGGGATCGA-TCC
** * * * * *
26339881 GATCCCCCTCTGCGTGCTACCGATCCTGCTGTCGCAACCTTCGGTCCGGTCTGATCTTAGACTAA
126 GAT-CCCCTCTGCGTGCTGTCGATCCTGCTGTCACAACCCTCGATCCAGTCCGATCTTAGACTAA
* * * *
26339946 GAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTGAACCCACGAAATGAG
190 GAATGAACTCCATATGATTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAG
* *
26340011 CATGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGTCGGCGATCAGCCCAATCCCCCTC
255 CATGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCAGCGATCAGCCCAATCCCCCTC
* * *
26340076 TTCGTGCTACCAATCTCGCTACCAGTCTTGCTGCC
320 TGCGTGCTACCAATCCCGCTACCAGTCCTGCTGCC
* * * **
26340111 A-ATACCCTCGGTCCGACTAGGGCTTAGACGTGGAATGTACTCCGTATGCTTAAGTTAACCCATG
1 ACA-ACCCTCGGTCTGGCTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATG
* * * * ** * *
26340175 AAACGAGCGTGTGGGCGCTCAACCGACCGGAGAGGCAGAATTCGTAAGTCGAGGATCGGTCCGAT
65 AAACAAGCGTGCGGGCGCTC-AGCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGATCCGAT
* * * * **
26340240 CCCCCCTACGTGCTGTCGATCCTACTGTCACAACCCTCGATGCAGTCCGATCTTAGACTGGGAAT
129 CCCCTCTGCGTGCTGTCGATCCTGCTGTCACAACCCTCGATCCAGTCCGATCTTAGACTAAGAAT
* * *
26340305 GAAC-CCGTATGATTAGACTGAGGATGAACTCCGTATTCCTAAGTCAACCCACAAAATGAGCGTG
194 GAACTCCATATGATTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATG
* * * * *
26340369 CGGGCGCTCAGCCGGTCGGAGAGGCATAATGCGCAAGCCAAG-GATCAGCCCGATCCTCCTCTGC
259 CGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCC-AGCGATCAGCCCAATCCCCCTCTGC
** * *
26340433 GTGCTGTCGATCCCGCTGCCAGTCCTGCTGCC
323 GTGCTACCAATCCCGCTACCAGTCCTGCTGCC
* * *
26340465 ACAACCCTCGGTCTGGCTAGGGCTTAGACGTGAAATGTATTCCGTATGCCTAAGCCAACCCACGA
1 ACAACCCTCGGTCTGGCTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGA
* * * *
26340530 AACAAGCGTGCGGGCTCTCAGTGTATCGGAGAGGCAGAATGCACAAG-CTGGGGATCGATCGGAT
66 AACAAGCGTGCGGGCGCTCAGCG-ACCGGAGAGGCAGAATGCACAAGTC-GGGGATCGATCCGAT
26340594 CCCCTCTGCGTGCTGTCGATCCTGCT
129 CCCCTCTGCGTGCTGTCGATCCTGCT
26340620 ACCATAACCC
Statistics
Matches: 420, Mismatches: 79, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
353 3 0.01
354 258 0.61
355 59 0.14
356 98 0.23
357 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (354 bp):
ACAACCCTCGGTCTGGCTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGA
AACAAGCGTGCGGGCGCTCAGCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGATCCGATCC
CCTCTGCGTGCTGTCGATCCTGCTGTCACAACCCTCGATCCAGTCCGATCTTAGACTAAGAATGA
ACTCCATATGATTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCG
GGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCAGCGATCAGCCCAATCCCCCTCTGCGTG
CTACCAATCCCGCTACCAGTCCTGCTGCC
Found at i:26341358 original size:346 final size:346
Alignment explanation
Indices: 26340751--26341680 Score: 948
Period size: 346 Copynumber: 2.7 Consensus size: 346
26340741 AATCTGGCTG
* * * * * * *
26340751 GGGCTTAGACATGGAATGTGCTCCCTATGCCTAAACCAACCCATGAAACGGGCGTACGGGCACTC
1 GGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * * *
26340816 AGTCGGCTGGAGGGGCAGAATGCACAAG-CCAGGGATCAGCCCGATCCCCCTACGTGCTGCCGAT
66 AGCCGACTGGAGAGGCAGAATGCACAAGTCGA-GGATCAGCCCGATCCCCCTACGTGCTGTCGAT
* * * * * * *
26340880 CCTATTACCGCAA-CCTTCAGTCCGATCCGATCTTCGACTGGCAATGAACATCGCATGCTTAGAC
130 CCTGTTACCGTAACCCTT-AATCCGGTTCGATCTTAGACTGG-AATGAAC-TCGTATGCTTAGAC
* * * * *
26340944 TGCGGATAAAC-TCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAATCGGTCG
192 TGGGGATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAACCGGCCG
* ** *
26341008 GAGAGGCA-GAT-CG-G-A-GATCAGCCCGATCCCCCTCTACGTGCTGCCGATCTCC-CTGTCGG
256 GAGAGGCATAATGCGAGCAGGATCAGCCCGAT-CCCCTCTACGTGCTGCCGATC-CCACTCCCAG
*
26341067 TCCTACTACCATAACCCTTGGTCCAGCTA
319 TCCTACTACCAT-ACCCTCGGTCCAGCTA
* * *
26341096 GGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTGCAGGTGCTC
1 GGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
* * *
26341161 AGCCAACTGGAGAGGCAGAATGCGCAAGTCGAGGATC-GACCCGATCCCTCCTACGTGCTATCGA
66 AGCCGACTGGAGAGGCAGAATGCACAAGTCGAGGATCAG-CCCGATCCC-CCTACGTGCTGTCGA
* * * * *
26341225 TCCTGCTGCCGTAACCCTTGATCCGGTTCGATCTTAGACTAGGAATGAACTCTATATGCTTAAAC
129 TCCTGTTACCGTAACCCTTAATCCGGTTCGATCTTAGACT-GGAATGAACTC-GTATGCTTAGAC
* * * * *
26341290 TGGGGACGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTTAGCCTGCCGG
192 TGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAACCGGCCGG
* * * *
26341355 AGAGGCATAATGCGTAAGTCAGGGATCAGCTCGATCCCCTCTGCGTGTTGTCGATCCCACTCCCA
257 AGAGGCATAATGCG--AG-CA-GGATCAGCCCGATCCCCTCTACGTGCTGCCGATCCCACTCCCA
* * *
26341420 GTCCTGCTACCATACCCTCGGTCCGGCTG
318 GTCCTACTACCATACCCTCGGTCCAGCTA
* ** * *
26341449 GGGCTTAGACGTGGAATGTCCTTTGTATGCGTAAGCCAACCCACGAAACGAGCGTAG-GGGCGCT
1 GGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-GCGGGCGCT
* * * * * * *
26341513 CAGCCGACTGGAGAGGCAGAATGTACAAACTTG-GGATTAGCTCGGTCCCCCTGCGTGCTGTCGA
65 CAGCCGACTGGAGAGGCAGAATGCAC-AAGTCGAGGATCAGCCCGATCCCCCTACGTGCTGTCGA
* * * *
26341577 TCCTGTTACTGTAACCCTCAATCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCATAGAC
129 TCCTGTTACCGTAACCCTTAATCCGGTTCGATCTTAGACT-GGAATGAACT-CGTATGCTTAGAC
* * * *
26341642 TGGGTATGAACTCCGTATGCCTAAGTTAACCTACGAAAC
192 TGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
26341681 AAGCGTGCTG
Statistics
Matches: 478, Mismatches: 86, Indels: 35
0.80 0.14 0.06
Matches are distributed among these distances:
344 1 0.00
345 94 0.20
346 116 0.24
347 10 0.02
348 2 0.00
351 1 0.00
352 99 0.21
353 105 0.22
354 39 0.08
355 11 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (346 bp):
GGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
AGCCGACTGGAGAGGCAGAATGCACAAGTCGAGGATCAGCCCGATCCCCCTACGTGCTGTCGATC
CTGTTACCGTAACCCTTAATCCGGTTCGATCTTAGACTGGAATGAACTCGTATGCTTAGACTGGG
GATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTCAACCGGCCGGAGAG
GCATAATGCGAGCAGGATCAGCCCGATCCCCTCTACGTGCTGCCGATCCCACTCCCAGTCCTACT
ACCATACCCTCGGTCCAGCTA
Done.