Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 273 of 402
Found at i:26341640 original size:26 final size:26
Alignment explanation
Indices: 26341611--26341661 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
26341601 GGTTTGATCT
26341611 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
*
26341637 TAGACTGGGTATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
26341662 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:26341933 original size:26 final size:26
Alignment explanation
Indices: 26341897--26341949 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26341887 CCGGTCCGAT
*
26341897 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26341923 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26341949 C
1 C
26341950 CTAAAGTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26343157 original size:26 final size:26
Alignment explanation
Indices: 26343121--26343173 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26343111 TCAGTTTGAT
26343121 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* * *
26343147 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
26343173 C
1 C
26343174 CTGAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:26343512 original size:26 final size:26
Alignment explanation
Indices: 26343476--26343528 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26343466 CCGATCAGAT
*
26343476 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26343502 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26343528 C
1 C
26343529 CTAAAGTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26345361 original size:355 final size:353
Alignment explanation
Indices: 26344729--26345852 Score: 1255
Period size: 355 Copynumber: 3.1 Consensus size: 353
26344719 CATGAAATGT
* * * * * * *
26344729 ACTCCGTATGCCTAAGTCAACCCATGGAACGAGCGTACAGGTGCTCAGCAGGCCAGAGAGGCAGA
1 ACTCCGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACAGGCCAGAGAGGCAGA
* *
26344794 ATGCGCAAGTCGGAGATCAGCCCGATCCCCCTCTGC-GCTACCGATCCTGCTAC-CCA-TCCTAC
66 ATGCGCAAGTCGAAGATCAGCCCGATCCCCCTCTGCTGCTACCGATCCTGC--CGCCAGTCCTGC
* * * *
26344856 TACCACAACCCTCGGTCTGGTTGGGGCTTAGACATGAAATGTACTCCGTATGCCTAAGCCAACCC
129 TACCACAACCATCGGTCTGGCTGGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCC
* *** * * ** *
26344921 ATGAAACGAG-TGTCCGGGAGCTCAGTTGGTCGGAGAGGTAGAATGCGTAAGCCAAGGATCGGCT
194 ATGAAACAAGCTGT--GGGAGCTCAACCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATC-GAT
* * * * * ** * *
26344985 CGA-TCCCTCTTACGTGCTGCCAATCTTACTGCCGCAAGGCTCGATCCAATCCAATCTTAGATTG
256 CCAGTCCCCCTTACATGCTGCCAATCCTGCTGCCGCAACCCTCGATCCAGTCCAATCTTAGACTG
26345049 GGAATGAACTCCATATGCTTAGACTGGGGATGA
321 GGAATGAACTCCATATGCTTAGACTGGGGATGA
* *
26345082 ACTCCGTATACGTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACAGGCCAGAGAGGCAGA
1 ACTCCGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACAGGCCAGAGAGGCAGA
* * * *
26345147 ATACGCAAGTCGAAGATCAACCCGATCCCCCTCTGCGTGCTGCCTATCCTGCCGCCAGTCCTGCT
66 ATGCGCAAGTCGAAGATCAGCCCGATCCCCCTCTGC-TGCTACCGATCCTGCCGCCAGTCCTGCT
*
26345212 ACCACAACCATTGGTCTGGCTGGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCCA
130 ACCACAACCATCGGTCTGGCTGGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCCA
* * *
26345277 CGAAACAAGCATGTGGGTGCTCAACCGATCGGAGAGGCAGAATAG-GTTAGCCGGGGATCGATCC
195 TGAAACAAGC-TGTGGGAGCTCAACCGATCGGAGAGGCAGAAT-GCGTAAGCCGGGGATCGATCC
* * * ** *
26345341 AGTCCCCCTTACATGCTGCCAATCCTGCAGCCGTAACCCTCAATCCAGTCTGATCTTAGACTAGG
258 AGTCCCCCTTACATGCTGCCAATCCTGCTGCCGCAACCCTCGATCCAGTCCAATCTTAGACTGGG
*
26345406 AATGAACTCCGTATGCTTAGACTGGGGATGA
323 AATGAACTCCATATGCTTAGACTGGGGATGA
* * * * *
26345437 ACTCCGTGTACCTAAGTCAACGCACAAAACGAGCGTGCGTGCGCTCAGCCGGCCGGAGAGGCCGA
1 ACTCCGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA---------ACAGGCC-A
* * * *
26345502 TCGAAGAGGCATAATGCGTAAGCCGAGGATCAGCCC-AGTCCCCCTCTGCATGCTACCGATTCC-
56 --G-AGAGGCAGAATGCGCAAGTCGAAGATCAGCCCGA-TCCCCCTCTGC-TGCTACCGA-TCCT
* *
26345565 GCTGCCAGTCTTGCTACCACAACCATCGGTCTGGCTGGGGCTTAGACATGGAATGTACTCTGTAT
115 GCCGCCAGTCCTGCTACCACAACCATCGGTCTGGCTGGGGCTTAGACATGGAATGTACTCTGTAT
* **
26345630 GCCTAAGCCAACCCATGAAA-ATGAGCGTGTGGGCGCTCAACCGATCGGAGAGGCAGAATGCACA
180 GCCTAAGCCAACCCATGAAACA--AGC-TGTGGGAGCTCAACCGATCGGAGAGGCAGAATGCGTA
* * * ** *
26345694 AGCCGGGGATC-AGCCCGATCCTCCC-TGCATG-TGGCTGATCCTGCTGCTGCAACCCTCGATCC
242 AGCCGGGGATCGATCCAG-TCC-CCCTTACATGCT-GCCAATCCTGCTGCCGCAACCCTCGATCC
*
26345756 GGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGA
304 AGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGA
* *
26345806 ACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 ACTCCGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
26345853 GTTGACTAGA
Statistics
Matches: 651, Mismatches: 91, Indels: 42
0.83 0.12 0.05
Matches are distributed among these distances:
353 92 0.14
354 7 0.01
355 239 0.37
356 1 0.00
357 3 0.00
364 6 0.01
365 1 0.00
367 3 0.00
368 131 0.20
369 165 0.25
370 3 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (353 bp):
ACTCCGTATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACAGGCCAGAGAGGCAGA
ATGCGCAAGTCGAAGATCAGCCCGATCCCCCTCTGCTGCTACCGATCCTGCCGCCAGTCCTGCTA
CCACAACCATCGGTCTGGCTGGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCCAT
GAAACAAGCTGTGGGAGCTCAACCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGATCCAGT
CCCCCTTACATGCTGCCAATCCTGCTGCCGCAACCCTCGATCCAGTCCAATCTTAGACTGGGAAT
GAACTCCATATGCTTAGACTGGGGATGA
Found at i:26345793 original size:26 final size:26
Alignment explanation
Indices: 26345764--26345816 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26345754 CCGGTCCAAT
26345764 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26345790 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
26345816 C
1 C
26345817 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26347870 original size:26 final size:26
Alignment explanation
Indices: 26347834--26347886 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26347824 CCATTTCGAT
*
26347834 CTTAGACTGGGAATAAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
* *
26347860 CTTACACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
26347886 C
1 C
26347887 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCCGTATG
Found at i:26348365 original size:368 final size:372
Alignment explanation
Indices: 26347642--26348657 Score: 1056
Period size: 368 Copynumber: 2.7 Consensus size: 372
26347632 ACGTGCTGCC
* * *
26347642 CGTCCTGCTGCCACAACCCTCGGT-TCGGCTGGGGCTTAGACATGAAATG-AGCTCCCTATGCCT
1 CGTCCTGCTGCCACAACCCTCGGTCT-GGCTGGGGCTTAGACGTGGAATGTA-CTCCATATGCCT
* * * *
26347705 AAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCGG-TCGGAGAGGTAGAATGCACAAGCCG
64 AAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCT-AGAGAGGTAGAATGCGCAAGCCG
* * ** * * * * *
26347769 AGGATCGACTCGGTCCCCCATGTGTGCTACCGATCCTATTACCGCAACCCCCAATCCAT-TTC-G
128 GGGATCGAC-CGGTCCCCCATGCGTGCTA-CGATCCTGCTGCCGTAACCCTCGAT-C-TGGTCTG
* * *
26347832 ATCTTAGACTGGGAATAAACTCCGTATGCTTACACTGGGGATGAACTCCGTATGCCTAAGTGAAC
189 ATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
26347897 CCA-GAAAATGAGCATGCAGGCACTCAGCCGATCGAAGGGGCCGATCGGAGAGGCATAACTTGTA
254 CCACG-AAACGAGCATACAGGCACTCAGCCGACCGAAGAGGCCGATCGGAGAGACATAACTCGTA
* ** * * * * * *
26347961 AGTCGGGGATTAGCCTGGTCCCCTTCTGCATGCTGTCGATC-C-C-G-CTA-C-TG
318 AGCCGAAGATCAGCCCGATCCCCTTATG-ATGCTGTCAATCTCGCTGCCGATCTTG
26348011 -GTCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTACTCCATATGCCTAA
1 CGTCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTACTCCATATGCCTAA
* * * * *
26348075 GCCAACCCACGAAACAAGCGTGCAGGCGCTCAACCGGCTAGAGAGGTAGAATGTGCAAACCGGGG
66 GCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGAGGTAGAATGCGCAAGCCGGGG
* * *
26348140 ATCGACACGGTCCCCCCTGCATGCTGTCGATCCTGCTGCCGTAACCCTCGATCTGGTCTGATCTT
131 ATCGAC-CGGTCCCCCATGCGTGCT-ACGATCCTGCTGCCGTAACCCTCGATCTGGTCTGATCTT
* * *
26348205 AGACTGGGAATGAACTCTGTACGCTTAAACTGAGGATGAACTCCGTATGCCTAAGTCAACCCACG
194 AGACTGGGAATGAACTCCGTATGCTTAAACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG
* * ** * * *
26348270 AACCGAGCATACGGGTGCTCAGTCGACCGTAGAGGCCGGTCGGAGAGACATAA-TGCGTAAGCCG
259 AAACGAGCATACAGGCACTCAGCCGACCGAAGAGGCCGATCGGAGAGACATAACT-CGTAAGCCG
26348334 AAGATCAGCCCGATCCCACTCTATG-TGCTGTCAATCTCGCTGCCGATCTTG
323 AAGATCAGCCCGATCCC-CT-TATGATGCTGTCAATCTCGCTGCCGATCTTG
* * ** ***
26348385 CTGTCGGTCTTGCTGCCACAACCCTTGGTCCGATTGGGGCTTAGACGTGGAATGTACTATGTATG
1 C-GTC---C-TGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTACTCCATATG
** * *
26348450 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAAC-CGTAGAGGCAGAATGCGCAAG
61 CCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTAG-AGAGGTAGAATGCGCAAG
* * * * * *
26348514 CTGGGGATCGACCAGGTTCCCCTTGCGTGCTACTGATCCTGCTGTCATAACCCTCGATCCGGTCT
125 CCGGGGATCGACC-GGTCCCCCATGCGTGCTAC-GATCCTGCTGCCGTAACCCTCGATCTGGTCT
* * * * *
26348579 GATCTTAGACTGGGAATGAACTCCGTATGGTTAGACTGGGGATAAACTTCGTATGCCTAAGTTAA
188 GATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGGATGAACTCCGTATGCCTAAGTCAA
26348644 CCCACGAAACGAGC
253 CCCACGAAACGAGC
26348658 GTGCTGGCAC
Statistics
Matches: 536, Mismatches: 86, Indels: 39
0.81 0.13 0.06
Matches are distributed among these distances:
366 1 0.00
367 4 0.01
368 283 0.53
369 7 0.01
370 4 0.01
371 1 0.00
372 2 0.00
373 1 0.00
374 2 0.00
376 3 0.01
379 4 0.01
380 224 0.42
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (372 bp):
CGTCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGTACTCCATATGCCTAA
GCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGAGGTAGAATGCGCAAGCCGGGG
ATCGACCGGTCCCCCATGCGTGCTACGATCCTGCTGCCGTAACCCTCGATCTGGTCTGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAAACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCATACAGGCACTCAGCCGACCGAAGAGGCCGATCGGAGAGACATAACTCGTAAGCCGAAG
ATCAGCCCGATCCCCTTATGATGCTGTCAATCTCGCTGCCGATCTTG
Found at i:26348612 original size:26 final size:26
Alignment explanation
Indices: 26348583--26348633 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26348573 CGGTCTGATC
*
26348583 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATAAACTCCGTATGG
* *
26348609 TTAGACTGGGGATAAACTTCGTATG
1 TTAGACTGGGAATAAACTCCGTATG
26348634 CCTAAGTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGG
Found at i:26349665 original size:159 final size:159
Alignment explanation
Indices: 26349309--26349755 Score: 429
Period size: 159 Copynumber: 2.8 Consensus size: 159
26349299 AGCTCCGTAT
* * * ** *
26349309 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACG-AAATGAGAATGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAAATGAGCGTGCGGGTGCTCA
* * * * * *
26349373 ACCGGTCGGAGAGGCAGAATGCGCAAGCCA-GGGATCGACCCGATCCCCCCTGCGTGCTGTCGAT
66 GCCGGTCGGAGAGGCAAAATGTGCAAG-CAGGGGATCGACTCGGTCCCCTCTGCGTGCTGTCGAT
* * * * * *
26349437 CCTGCTACCGCAACGCTCGGTCCGGTCTGA
130 CCCGCTACCACAACCCTCAGTCCGGCCGGA
* * ** * * *
26349467 TCTTAGAC-TAGGAATGAACTTCATATGCATAAGTTAACCCA-GAAAATAAGCGTACGGGTGCTG
1 GCTTAGACAT-GGAATGAACTCCATATGCATAAGCCAACCCACGAAAATGAGCGTGCGGGTGCTC
* * * *
26349530 AGCCGGTCGAAGAGGCATAATGTGCAAGCAGGGGATCGACTCGGTCTCCCTCTACGTGCTATCGA
65 AGCCGGTCGGAGAGGCAAAATGTGCAAGCAGGGGATCGACTCGGTC-CCCTCTGCGTGCTGTCGA
* * *
26349595 TCCCGCTGCCACAACCCTCAGTCTGGCCGGG
129 TCCCGCTACCACAACCCTCAGTCCGGCCGGA
* * * ** *
26349626 GCTTAGACATGGAATGAGCTCCCTATGCTTAAGCCAACCCACGAAACGGA-CGTGCGGGTGATCA
1 GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAAATGAGCGTGCGGGTGCTCA
* * * * *
26349690 GTCGATCGGAGAGGCAAAATGTGCAAGCCGGAGATCAGACT-GGTCCCCTCTGCATGCTGTCGAT
66 GCCGGTCGGAGAGGCAAAATGTGCAAGCAGGGGATC-GACTCGGTCCCCTCTGCGTGCTGTCGAT
26349754 CC
130 CC
26349756 TACTGTCGCA
Statistics
Matches: 229, Mismatches: 53, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 4 0.02
158 101 0.44
159 114 0.50
160 10 0.04
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCATAAGCCAACCCACGAAAATGAGCGTGCGGGTGCTCA
GCCGGTCGGAGAGGCAAAATGTGCAAGCAGGGGATCGACTCGGTCCCCTCTGCGTGCTGTCGATC
CCGCTACCACAACCCTCAGTCCGGCCGGA
Found at i:26349811 original size:158 final size:156
Alignment explanation
Indices: 26349310--26349814 Score: 446
Period size: 158 Copynumber: 3.2 Consensus size: 156
26349300 GCTCCGTATG
* * * * * *
26349310 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAATGAGA-ATGCGGGCGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAAAG-GACGTGCGGGTGCTCAG
* * * * *
26349374 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
65 CCGGTCGGAGAGGCAAAATGTGCAAGCC-GGGATCGA-CTGGTCCCCTCTGCGTGCTGTCGATCC
* * ** *
26349439 TGCTACCGCAACGCTCGGTCCGGTCTGAT
128 TGCTGCCGCAACCCTCCATCCGGTCCGAT
* * * ** ** * *
26349468 CTTAGAC-TAGGAATGAACTTCATATGCATAAGTTAACCCA-GAAAATAAGCGTACGGGTGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCTTAAGCCAACCCACGAAAAGGA-CGTGCGGGTGCTCA
* * * * *
26349531 GCCGGTCGAAGAGGCATAATGTGCAAGCAGGGGATCGACTCGGTCTCCCTCTACGTGCTATCGAT
64 GCCGGTCGGAGAGGCAAAATGTGCAAGC-CGGGATCGACT-GGTC-CCCTCTGCGTGCTGTCGAT
* * * **
26349596 CCCGCTGCCACAACCCT-CAGTCTGG-CCGGGG
126 CCTGCTGCCGCAACCCTCCA-TCCGGTCC-GAT
* * * * *
26349627 CTTAGACATGGAATGAGCTCCCTATGCTTAAGCCAACCCACGAAACGGACGTGCGGGTGATCAGT
1 CTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAAAGGACGTGCGGGTGCTCAGC
* *
26349692 CGATCGGAGAGGCAAAATGTGCAAGCCGGAGATCAGACTGGTCCCCTCTGCATGCTGTCGATCCT
66 CGGTCGGAGAGGCAAAATGTGCAAGCCGG-GATC-GACTGGTCCCCTCTGCGTGCTGTCGATCCT
* *
26349757 ACTGTCGCAACCCTCCATCCGGTCCGAT
129 GCTGCCGCAACCCTCCATCCGGTCCGAT
*
26349785 CTTAGAC-TAGGAATGAACTTCGTATGCTTA
1 CTTAGACAT-GGAATGAACTCCGTATGCTTA
26349815 GATGGGGGAT
Statistics
Matches: 269, Mismatches: 63, Indels: 30
0.74 0.17 0.08
Matches are distributed among these distances:
156 1 0.00
157 7 0.03
158 138 0.51
159 113 0.42
160 10 0.04
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAAAGGACGTGCGGGTGCTCAGC
CGGTCGGAGAGGCAAAATGTGCAAGCCGGGATCGACTGGTCCCCTCTGCGTGCTGTCGATCCTGC
TGCCGCAACCCTCCATCCGGTCCGAT
Found at i:26350194 original size:26 final size:26
Alignment explanation
Indices: 26350154--26350205 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
26350144 TGGTCTGATG
26350154 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
26350180 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
26350206 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:26350551 original size:26 final size:26
Alignment explanation
Indices: 26350522--26350574 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26350512 CTGATCCGAT
26350522 CTTAGATTGGGAG-TGAACTCCGTATG
1 CTTAGA-TGGGAGATGAACTCCGTATG
*
26350548 CTTAGATGGGGGATGAACTCCGTATG
1 CTTAGATGGGAGATGAACTCCGTATG
26350574 C
1 C
26350575 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (26 bp):
CTTAGATGGGAGATGAACTCCGTATG
Found at i:26350683 original size:369 final size:366
Alignment explanation
Indices: 26349599--26350916 Score: 1506
Period size: 368 Copynumber: 3.6 Consensus size: 366
26349589 TATCGATCCC
** * * *
26349599 GCTGCCACAACCCTCAGTCTGGCCGGGGCTTAGACATGGAATG-AGCTCCCTATGCTTAAGCCAA
1 GCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAA
* * * *
26349663 CCCACGAAACGGACGTGCGGGTGATCAG-TCGATCGGAGAGGCAAAATGTGCAAGCCG-GAGATC
65 CCCACGAAAAGGGCGTGCGGGTGCTCAGCT-GATCGGAGAGGCAAAATGCGCAAGCCGAG-GATC
* * * * * * *
26349726 AGA-CTGGTCCCCTCTGCATGCTGTCGATCCTACTGTCGCAACCCTCCATCCGGTCCGATCTTAG
128 -GACCCGGTCCCCCCTACGTGCTGTCGATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAG
* * * * *
26349790 ACTAGGAATGAACTTCGTATGCTTAGATGGGGGATGAACACCGTATGCCTTAGTCAACCCACGAA
192 ACTGGGAATGAACTCCGTATGCTTAGATGGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
* * * *
26349855 AC-AAGTGTGCGGGCGCTCAACCGGTAGGAGAGGCCGGTCGGAAAGGCATAATGTGCAAGCCGAG
257 ACGAA-CGTGCGGGCGCTCAACC-GTCGGAGAGGCCGGTTGGAGAGGCATAATGTGCAAGCCG-G
* * *
26349919 GATCAGCCCGGT-CCTCCTCTGCATGCAGTCGATCCCGCTGTCGGTCCT
319 GATCAGCCCGGTCCCT-CTCTACGTGCTGTCGATCCCGCTGTCGGTCCT
** *
26349967 GCTGCCACAACCCTC-GATCCAATTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAA
1 GCTGCCACAACCCTCAG-TCCAGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAA
* * * * * * ** **
26350031 CCCGCGAAAAGGGCGAGCGGGTGCTCAGCCGACCGGAGAGGAAAAATGCTCAAATCGACAATCGA
65 CCCACGAAAAGGGCGTGCGGGTGCTCAGCTGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGA
* * * *
26350096 CCCGGTCCCCCCTACGTGCTGTCGATCCTACTATCGCAACCCTCGATCTGGTCTGATGTTAGACT
130 CCCGGTCCCCCCTACGTGCTGTCGATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGACT
26350161 GGGAATGAACTCCGTATGCTTAGACT-GGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
195 GGGAATGAACTCCGTATGCTTAGA-TGGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
* * * * * *
26350225 GAGCGTGCGGGCACTCAATCGGCTGA-AGGAGCCGGTTGGAGAGGCATAATGTGCAAGTCGGGGA
259 GAACGTGCGGGCGCTCAACCGTCGGAGA-G-GCCGGTTGGAGAGGCATAATGTGCAAG-CCGGGA
* * *
26350289 TCAGCCCGATCCCCCTCTACGTGCTGTCGATCTCGCTGTCGGTCCT
321 TCAGCCCGGTCCCTCTCTACGTGCTGTCGATCCCGCTGTCGGTCCT
** * * *
26350335 GCTGCCACAACCCTTGGTCCGGCTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAAC
* ** * *
26350400 CCACGAAAAGGGCGTGCGGGTGCTCAGCTGGTTAGAGAGGCAGAATGCGCAAGCTTG-GGATCGA
66 CCACGAAAAGGGCGTGCGGGTGCTCAGCTGATCGGAGAGGCAAAATGCGCAAGC-CGAGGATCGA
* * * * * * *
26350464 CTCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTAACGCAACCCTCAATCTGATCCGATCTTAGAT
130 CCCGGT-CCCCCCTACGTGCTGTCGATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGAC
*
26350529 TGGGAGTGAACTCCGTATGCTTAGATGGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
194 TGGGAATGAACTCCGTATGCTTAGATGGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
* * * * * *
26350594 GAACATGCGGGTGTTGAACCGATCGGAGAGGCCAGTTGGAGAGGCATAACGTGCAAGCCTGGGAT
259 GAACGTGCGGGCGCTCAACCG-TCGGAGAGGCCGGTTGGAGAGGCATAATGTGCAAGCC-GGGAT
* * * * * *
26350659 TAGCCCGGTCCCTCTCTTCGTGCTGCCGATCCCGCTGCCAGTCTT
322 CAGCCCGGTCCCTCTCTACGTGCTGTCGATCCCGCTGTCGGTCCT
* * * *
26350704 GCTGCCATAACTCTCAGTCCAGCTGGGGCTTAGACATGGAATGTACTCTGTATGCTTAAGCCAAC
1 GCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAAC
* * * * * *
26350769 CCACGAAACA-AGCGTACGAGCGCTCAGCAGGTCGGAGAGGCAAAATGCGCAAGCCGAGGATCGA
66 CCACGAAA-AGGGCGTGCGGGTGCTCAGCTGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGA
* * **
26350833 CCCGATCCCCCCTACGTGCTGTCGATCCTGCTATCGCAACCCTCGATCCGATTTGATCTTAGACT
130 CCCGGTCCCCCCTACGTGCTGTCGATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGACT
*
26350898 GGGAATGAGCTCCGTATGC
195 GGGAATGAACTCCGTATGC
26350917 CTAAGTCGAC
Statistics
Matches: 798, Mismatches: 132, Indels: 40
0.82 0.14 0.04
Matches are distributed among these distances:
366 1 0.00
367 7 0.01
368 472 0.59
369 312 0.39
370 5 0.01
371 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (366 bp):
GCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAAC
CCACGAAAAGGGCGTGCGGGTGCTCAGCTGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGAC
CCGGTCCCCCCTACGTGCTGTCGATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGATGGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
ACGTGCGGGCGCTCAACCGTCGGAGAGGCCGGTTGGAGAGGCATAATGTGCAAGCCGGGATCAGC
CCGGTCCCTCTCTACGTGCTGTCGATCCCGCTGTCGGTCCT
Found at i:26352117 original size:26 final size:26
Alignment explanation
Indices: 26352088--26352140 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26352078 CCAATCTGAT
26352088 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26352114 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26352140 C
1 C
26352141 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26353260 original size:159 final size:157
Alignment explanation
Indices: 26352834--26353265 Score: 385
Period size: 158 Copynumber: 2.7 Consensus size: 157
26352824 AGCTTCGTTT
*
26352834 GCTTAGACAT-GAATGAACTACGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG-TGCTCA
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCT-CTCA
* * * * * ** * * *
26352897 GTCGACCGGAGAGGTAGAATGCACAAGCCGGGGATCAACCCGGACACCACCTGCATGCTATTGAT
64 GTCGGCCGAAGAGGCAGAATGCGCAAG-CAGGGATCGGCCCGGTCCCCACCTGCATGCTATAGAT
**
26352962 CCTGCTGCTGCAACCCTCGATCTGATCCGA
128 CCCACTGCTGCAACCCTCGATCTGATCCGA
* * * * * * * *
26352992 TCTTAGAC-TGGGAATGAACTCCTATGCATAAGTCAACCCACGAAATGAGCGTGTGGGCGCTGAG
1 GCTTAGACAT-GGAATGAACTCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCTCTCAG
* * * * * * ** * *
26353056 -CTAGCCAAAGAGGCATAATGCGTAAGCCGAGGATCGGCCCAGTCCCCTTCTGCGTGCTGTCAG-
65 TC-GGCCGAAGAGGCAGAATGCGCAAGCAG-GGATCGGCCCGGTCCCCACCTGCATGCTAT-AGA
* * *
26353119 TCCCACTGCTGCAACCCTCGGTCTGA-CTGGG
127 TCCCACTGCTGCAACCCTCGATCTGATC-CGA
*
26353150 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACCGA-CGTGCGGGCTCTCA
1 GCTTAGACATGGAATGAACT-CCTATGCCTAAGCCAACCCATGAAA-CGAGCGTGCGGGCTCTCA
*
26353214 GTCGGCCGAAGAGGCAGAATGCGCAAGCTAGGGATTGGCCCGGTCCCC-CCTG
64 GTCGGCCGAAGAGGCAGAATGCGCAAGC-AGGGATCGGCCCGGTCCCCACCTG
26353266 TGTGCGGTCG
Statistics
Matches: 212, Mismatches: 50, Indels: 24
0.74 0.17 0.08
Matches are distributed among these distances:
157 5 0.02
158 122 0.58
159 81 0.38
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCTCTCAGT
CGGCCGAAGAGGCAGAATGCGCAAGCAGGGATCGGCCCGGTCCCCACCTGCATGCTATAGATCCC
ACTGCTGCAACCCTCGATCTGATCCGA
Found at i:26353704 original size:26 final size:26
Alignment explanation
Indices: 26353663--26353715 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26353653 TCGGTTTGAT
26353663 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26353689 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
26353715 C
1 C
26353716 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26353952 original size:22 final size:22
Alignment explanation
Indices: 26353927--26353980 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
26353917 CGGTCAGCCG
*
26353927 GCCGGAGAGGCAAAATGCGCAA
1 GCCGGAGAGGCAAAATACGCAA
* * *
26353949 GCCGAAAAGGCAGAATACGCAA
1 GCCGGAGAGGCAAAATACGCAA
*
26353971 GCTGGAGAGG
1 GCCGGAGAGG
26353981 TGATCCTTGT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.37, C:0.20, G:0.37, T:0.06
Consensus pattern (22 bp):
GCCGGAGAGGCAAAATACGCAA
Found at i:26354744 original size:159 final size:157
Alignment explanation
Indices: 26354360--26354860 Score: 480
Period size: 158 Copynumber: 3.2 Consensus size: 157
26354350 GCTCAAAATA
* * *
26354360 TTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAATGAGCGTGCGGGCT-TTCAGC
1 TTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCATGCGGG-TGCTCAGC
* * **
26354424 CGGCCGGAGAGGTAGAATGCGTAAGCCGAGGATCGACCCGGTCCCCCATTGCATGCTGTGATCCT
65 CGGCCAGAGAGGCAGAATGCACAAGCCG-GGATCGACCCGGTCCCCCATTGCATGCTGTGATCCT
* * * * *
26354489 GCTCCCGCAACCCTCAGTCTGGTCCGATC
129 GCTCCCACAACCCTCAGTCAGCTCAGAGC
* * *
26354518 TTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCATGCGGGCGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAGC
* * *
26354582 CGGCCAAAGAGGCATAATGCACAAGCCAGGGATCGACCCGGTCCCCC-TCTGCATGCTGTCGGT-
65 CGGCCAGAGAGGCAGAATGCACAAGCC-GGGATCGACCCGGTCCCCCAT-TGCATGCTGT-GATC
* * *
26354645 CTCGCTGCCACAACCCTCGGTCCAGCT-AGGGC
127 CT-GCTCCCACAACCCTCAGT-CAGCTCAGAGC
* * * * * *
26354677 TTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAA-CAGGCTTGCGGGTGCTCAGC
1 TTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGA-GCATGCGGGTGCTCAGC
* * *
26354741 CGGCTAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCTCA-TGCGTGCTGTCGATCC
65 CGGCCAGAGAGGCAGAATGCACAAGCC-GGGATCGACCCGGTCCCCCATTGCATGCTGT-GATCC
* * ** * * * *
26354805 TACTACTGCAACCCTCGGTCCGGTTC-GATC
128 TGCTCCCACAACCCTCAGT-CAGCTCAGAGC
26354835 TTAGAC-TGGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
26354861 TTAGACTGGG
Statistics
Matches: 283, Mismatches: 47, Indels: 26
0.79 0.13 0.07
Matches are distributed among these distances:
157 3 0.01
158 161 0.57
159 115 0.41
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
TTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAGCC
GGCCAGAGAGGCAGAATGCACAAGCCGGGATCGACCCGGTCCCCCATTGCATGCTGTGATCCTGC
TCCCACAACCCTCAGTCAGCTCAGAGC
Found at i:26354863 original size:26 final size:26
Alignment explanation
Indices: 26354834--26354886 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26354824 CCGGTTCGAT
26354834 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26354860 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26354886 C
1 C
26354887 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26355238 original size:26 final size:26
Alignment explanation
Indices: 26355202--26355254 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26355192 CCGATCCGAT
*
26355202 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26355228 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26355254 C
1 C
26355255 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26355972 original size:26 final size:26
Alignment explanation
Indices: 26355921--26355973 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26355911 GGTTCAAAAT
* *
26355921 CTTAGACTGGGAATGAGCCCCTTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
26355947 CTTAGA-TGTGGAATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACCCCGTATG
26355973 C
1 C
26355974 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:26356342 original size:158 final size:157
Alignment explanation
Indices: 26355946--26356362 Score: 415
Period size: 158 Copynumber: 2.6 Consensus size: 157
26355936 AGCCCCTTAT
* *
26355946 GCTTAGATGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGA-CTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
26356011 CCGGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCCCTGCGTGCTGTCGATC
65 CCGGCC-GAAAGGCAGAATACGCAAGCCGGGGATCGACTCGATCCCCCCCTGCGTGCTGACGATC
* * *
26356076 CTGCTACCGCAACCCTCGGTCTGGTCTAA
129 CAGCTACCACAACCCTCGATCTGGTCTAA
* * * * * ** * * *
26356105 TCTTCGACTGGGAATGAAATCCGTATGCATAAGTCAACCCATAAAACGAGCATGCTGGCGCTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
26356170 CCGACCGAAGAGGCA-TATACGCAAGCCGGGGATCGGCTTGGTCCCCCTCTGCGTGCTGACGGTC
65 CCGGCCGAA-AGGCAGAATACGCAAGCCGGGGATCGACTCGATCCCCCCCTGCGTGCTGACGATC
* *
26356234 CAGCTGCCACAACCCTCGATCTGG-CTAGG
129 CAGCTACCACAACCCTCGATCTGGTCTA-A
* * * * * *
26356263 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** *
26356328 TCGGCCGGAAAGGCAGAATGTGCAAGCTGGGGATC
65 CCGGCC-GAAAGGCAGAATACGCAAGCCGGGGATC
26356363 AGCCTAGTCC
Statistics
Matches: 202, Mismatches: 50, Indels: 12
0.77 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 120 0.59
159 79 0.39
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGAAAGGCAGAATACGCAAGCCGGGGATCGACTCGATCCCCCCCTGCGTGCTGACGATCCA
GCTACCACAACCCTCGATCTGGTCTAA
Found at i:26356439 original size:26 final size:26
Alignment explanation
Indices: 26356410--26356460 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26356400 CCGATTTGAT
*
26356410 CTTAGATTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
*
26356436 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
26356461 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:26356794 original size:26 final size:26
Alignment explanation
Indices: 26356765--26356817 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26356755 CCGATCTGAT
* *
26356765 CTTAGACTGG-GAATTAACTCTGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
26356791 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
26356817 C
1 C
26356818 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:26357139 original size:381 final size:382
Alignment explanation
Indices: 26356506--26357211 Score: 1008
Period size: 381 Copynumber: 1.9 Consensus size: 382
26356496 TCAGCCGGTC
* * * * ** * *
26356506 GGAGAGGCATAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCTCTGTGTGTTGTCGATCCCGCTG
1 GGAGAGGCATAATGCGCAAGCCGAGGATCAACTCGATCCCCCTATGCATGCTATCGATCCCGCTG
* * *
26356571 CCGGTCTTGCTACCACAACCCTCGGTCCAGCTGGGGATTAGACATGGAATGTACTTTGTATGCCT
66 CCAGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGATTAGACATGGAATGTACTTCGTATGCCT
* * * **
26356636 AAGCCAACCCAAGAAATGAACGTGCGGGCACTCAGCCGATTAGAGAGGCAGAATGCGCAAGCTAG
131 AAGCCAACCCAAGAAACGAACGTGCGGGCACTCAACCAACCAGAGAGGCAGAATGCGCAAGCTAG
** * *
26356701 GGATCGACCTGGTCCCCCCTGCGTGCTGCCGATCCTGTTACCGCAACCTTCGATCCGATCTGATC
196 GGATCGACCTGGTCCCCCCTGCGTGCTGCCGATCCTACTACCACAACCTTCGATCCGATCCGATC
* **
26356766 TTAGACTGGGAATTAACTCTGTATGCTTAGACTGGA-GATGAACTCCGTATGCCTAAGTCAACCC
261 TTAGACTGGGAATGAACTCCATATGCTTAGACTGGAGGATGAACTCCGTATGCCTAAGTCAACCC
26356830 ACAAAACGAGCTTACGGATGCTCAGCCGGCTGGAGAGGCCAATCGGAGAGGCCTGCT
326 ACAAAACGAGCTTACGGATGCTCAGCCGGCTGGAGAGGCCAATCGGAGAGGCCTGCT
* *
26356887 GGAGAGGCATAATGCGTAAGTCGAGGATCAACTCGATCCCCCTATGCATGCTATCGATCCCGCTG
1 GGAGAGGCATAATGCGCAAGCCGAGGATCAACTCGATCCCCCTATGCATGCTATCGATCCCGCTG
* *
26356952 CTAGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTACTTCGTATGCCT
66 CCAGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGATTAGACATGGAATGTACTTCGTATGCCT
* * * *
26357017 AAGCCAACCCATGAAACGAGCGTGTC-GGCACTCAACCAACCGGAGAGGCAGAATGCGCAAGC-C
131 AAGCCAACCCAAGAAACGAACGTG-CGGGCACTCAACCAACCAGAGAGGCAGAATGCGCAAGCTA
* * * *
26357080 GGGAATCGGTCC-GGTCCCCCCTGCGTGCTGTCGATCCTACTGCCATAACCCTT-GATCCGATCC
195 GGG-ATC-GACCTGGTCCCCCCTGCGTGCTGCCGATCCTACTACCACAA-CCTTCGATCCGATCC
* *
26357143 GATCTTAGACTGGGAATGAACTCCATATGCTTAGATTTGAGGATGAACTCCGTATGCCTAAGTCA
257 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAGGATGAACTCCGTATGCCTAAGTCA
26357208 ACCC
322 ACCC
26357212 GTGAAACAAG
Statistics
Matches: 283, Mismatches: 37, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
380 3 0.01
381 244 0.86
382 36 0.13
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (382 bp):
GGAGAGGCATAATGCGCAAGCCGAGGATCAACTCGATCCCCCTATGCATGCTATCGATCCCGCTG
CCAGTCCTGCTACCACAACCCTCGGTCCAGCTGGGGATTAGACATGGAATGTACTTCGTATGCCT
AAGCCAACCCAAGAAACGAACGTGCGGGCACTCAACCAACCAGAGAGGCAGAATGCGCAAGCTAG
GGATCGACCTGGTCCCCCCTGCGTGCTGCCGATCCTACTACCACAACCTTCGATCCGATCCGATC
TTAGACTGGGAATGAACTCCATATGCTTAGACTGGAGGATGAACTCCGTATGCCTAAGTCAACCC
ACAAAACGAGCTTACGGATGCTCAGCCGGCTGGAGAGGCCAATCGGAGAGGCCTGCT
Found at i:26359784 original size:26 final size:26
Alignment explanation
Indices: 26359733--26359785 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26359723 GGCTAAAAAT
*
26359733 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26359759 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26359785 C
1 C
26359786 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26360148 original size:25 final size:26
Alignment explanation
Indices: 26360101--26360152 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
26360091 CCGGTCCGAT
* *
26360101 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
26360127 CTTAGACTAGG-ATAAACTCTGTATG
1 CTTAGACTAGGAATAAACTCTGTATG
26360152 C
1 C
26360153 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCTGTATG
Found at i:26362085 original size:26 final size:26
Alignment explanation
Indices: 26362056--26362108 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26362046 GGCTCAAAAT
*
26362056 CTTAGAT-TCGGAATGAGCTCCATATG
1 CTTAGATAT-GGAATGAACTCCATATG
*
26362082 CTTAGATATGGAATGAACTCCGTATG
1 CTTAGATATGGAATGAACTCCATATG
26362108 C
1 C
26362109 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGATATGGAATGAACTCCATATG
Found at i:26362951 original size:355 final size:359
Alignment explanation
Indices: 26362506--26363346 Score: 898
Period size: 367 Copynumber: 2.4 Consensus size: 359
26362496 TCAGCTCAGT
* * * *
26362506 CCCCTTACGTGCTGTCGATCCTACTGCCGTAACCCTCGATTCGGTCCGATCTTATACTGGGAATG
1 CCCCCTACGTGCTGCCGATCCTACTGACGTAACCCTCGATTCGGTCCGATCTTAGACTGGGAATG
*
26362571 AACTTCATATGCTTAGACTGGGGATGAACTCCGTATCCCTAAGTCAACCAATGAAACGAGTGTGC
66 AACTCCATATGCTTAGACTGGGGATGAACTCCGTATCCCTAAGTCAACCAATGAAACGAGTGTGC
* * * *
26362636 GGGCGCT-CAG-TC-G-G-TCGGAGAGGCATAATGCACAAGTCGGGGATCAGCCTGGTCCCCCTC
131 GGGC-CTACAGATCAGAGATCGAAGAGGCATAATACACAAGCCAGGGATCAGCCTGGTCCCCCTC
* * * *** * * * * * *
26362696 TGCGTGCTGCCGATCCCACTGCCGGTCCTGCTATCACAACCCTCAGTTCGGCTGGGGCTTAGATG
195 TGCATGCTGCCAATCCCACTGCCGGTACAAATACCACAACCCTCAATCCGACTAGGGCTTAGACG
* * *
26362761 TGGAATGTACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGACCGAA
260 TGGAATGTACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAATCGACCGAA
26362826 TAGGCAAAATGCACAAGCCAGGGATTGGCCCGATC
325 TAGGCAAAATGCACAAGCCAGGGATTGGCCCGATC
* *
26362861 CCCCCTACGTGTTGCCGATCCTACTGACGTAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAAT
1 CCCCCTACGTGCTGCCGATCCTACTGACGTAACCCTCGATTC-GGTCCGATCTTAGACTGGGAAT
* * *
26362925 GAACTCCATATGCTTAGA-TAGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGT
65 GAACTCCATATGCTTAGACT-GGGGATGAACTCCGTATCCCTAAGTCAACCAATGAAACGAGTGT
* *
26362989 GTGGGCCTCAACAGATCGAAGAAGCCAATCGAAGAGGCATAATACGCAAGCCAGGGATCAGCCTG
129 GCGGGCCT--ACAGATC--AG-AG---ATCGAAGAGGCATAATACACAAGCCAGGGATCAGCCTG
** * * *
26363054 GTCCCCCTCTGCATGCTGCCAATCCCGTTGTCGGTACAAATGCCACAGCCCTCAATCCGACTAGG
186 GTCCCCCTCTGCATGCTGCCAATCCCACTGCCGGTACAAATACCACAACCCTCAATCCGACTAGG
*
26363119 GCTTAGACGTGGAATGTACTCCGTATGCTTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAA
251 GCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAA
* * * * ** *
26363184 TCGAACGGAGAGGC-AAAGGCGTAAGCCCA-GGATCGGCCC-AGTC
316 TCGACCGAATAGGCAAAATGCACAAG-CCAGGGATTGGCCCGA-TC
* * *
26363227 CCCCCTACGTGCT---G-T-C-GC--A-GT---CCTCGATCCGATCCGATCTTAGACTGGGAATG
1 CCCCCTACGTGCTGCCGATCCTACTGACGTAACCCTCGATTCGGTCCGATCTTAGACTGGGAATG
** * * * * * * * *
26363280 AACTCTGTATTCTTAGAATGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
66 AACTCCATATGCTTAGACTGGGGATGAACTCCGTATCCCTAAGTCAACCAATGAAACGAGTGTGC
26363345 GG
131 GG
26363347 ACGCTCATTC
Statistics
Matches: 409, Mismatches: 58, Indels: 39
0.81 0.11 0.08
Matches are distributed among these distances:
354 88 0.22
355 120 0.29
357 5 0.01
358 3 0.01
360 1 0.00
361 2 0.00
362 1 0.00
363 2 0.00
365 1 0.00
366 31 0.08
367 155 0.38
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (359 bp):
CCCCCTACGTGCTGCCGATCCTACTGACGTAACCCTCGATTCGGTCCGATCTTAGACTGGGAATG
AACTCCATATGCTTAGACTGGGGATGAACTCCGTATCCCTAAGTCAACCAATGAAACGAGTGTGC
GGGCCTACAGATCAGAGATCGAAGAGGCATAATACACAAGCCAGGGATCAGCCTGGTCCCCCTCT
GCATGCTGCCAATCCCACTGCCGGTACAAATACCACAACCCTCAATCCGACTAGGGCTTAGACGT
GGAATGTACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAATCGACCGAAT
AGGCAAAATGCACAAGCCAGGGATTGGCCCGATC
Found at i:26364525 original size:26 final size:26
Alignment explanation
Indices: 26364489--26364541 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26364479 CCGATCCGAT
26364489 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26364515 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26364541 C
1 C
26364542 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26364909 original size:26 final size:26
Alignment explanation
Indices: 26364858--26364910 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26364848 CCGATCCGAT
*
26364858 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26364884 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
26364910 C
1 C
26364911 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26365068 original size:369 final size:362
Alignment explanation
Indices: 26364318--26365607 Score: 1303
Period size: 369 Copynumber: 3.5 Consensus size: 362
26364308 CATAACCTTT
* * * *
26364318 GATCCGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCGTAAGCCAACCCATGAAACGGACG
1 GATCCGACTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCACGAAAC--AAG
* * * * * ** * * *
26364382 TG-CGGGCGCTCAGCCGGCCGA-AGAGGCAGAATGCGTAATTCGGGGATCAGCCCAATCCTCCCT
63 TGTCGGGTGCTCAGCCAGTCGAGA-AGGTAGAATGCGCAAGCCGAGGATC-GCCCAGTCCCCCCT
* * ** *
26364445 GCATGTTACCGATCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCC
126 GCGTGCTACCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCC
* *
26364510 ATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGGGTGCGGGTGC
191 GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGC-GGTGC
* * * * * ** *
26364575 TCAGCTGACCAGAGAGGCTGGCCGGAGAGGCATAATACGTAAGCCAGAAAGCAGGCTAGTCCCCC
255 TCAGC-CACC-GAGAGGCCGGTCGGAGAGGCATAATACGTAAG-CAGAGATCAACCCAGTCCCCC
* * * * * *
26364640 TCTGCGTGCTGCCAATCTCGCTGCCAGTCCTGCTACCACAACCCTC
317 TCTGTGTGCTGTCGATCCCGCTGACGGTCCTGCTACCACAACCCTC
*
26364686 GATCCGACTGGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAACAAGTGT
1 GATCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGT
26364751 ACGGGGTGCTCAGCCAGTCGAGAAGGTAGAATGCGCAAGCCGAGGATCGTCCCAGTCCCCCCTGC
66 -C-GGGTGCTCAGCCAGTCGAGAAGGTAGAATGCGCAAGCCGAGGATCG-CCCAGTCCCCCCTGC
* * * *
26364816 GTGCTACCAATTCTACTGTCGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGT
128 GTGCTACCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGT
* * *
26364881 ATGCTTAGACTGGGGATGAACTTCATATGCCTAAGTTAACCCACGAAACGAGAGTGCGCGTGCTC
193 ATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCG-GTGCTC
* * * ** * *
26364946 AGCCAACCGGAGAGGCCGGTTGAAAAGGCATAACCCGTAAGTCGGAGATCAACCCAGTCCCCTTC
257 AGCC-ACC-GAGAGGCCGGTCGGAGAGGCATAATACGTAAG-CAGAGATCAACCCAGTCCCCCTC
* *
26365011 TGTGTGCTGTCGATCCCGCTGTCGGTGCTGCTACCACAACCCTC
319 TGTGTGCTGTCGATCCCGCTGACGGTCCTGCTACCACAACCCTC
* * *
26365055 GATCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCTAACCCATGAAACGAGTGT
1 GATCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGT
* * * * ** *
26365120 CTGGGTGCTCAGTCGACTGGAG-AGGTAGAATACGCAAGCC-AGGGATCGACCTGGTCCCTCCTG
66 C-GGGTGCTCAG-CCAGTCGAGAAGGTAGAATGCGCAAGCCGA-GGATCG-CCCAGTCCCCCCTG
* * * *
26365183 CGTGCTGCTGATCCTGCTGTCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTCCG
127 CGTGCTACCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCG
* *
26365248 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGG-G--C
192 TATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGTGCTC
** * * * *
26365310 -G-CA-C---A-GCCGGTCGGAGAGGCATAATGTGCAAGCTGAGGATCAACTC-GATCCCCCGCT
257 AGCCACCGAGAGGCCGGTCGGAGAGGCATAATACGTAAGCAGA-GATCAACCCAG-TCCCCCTCT
*
26365367 GTATGCTGTCGATCCCGCT-ACTGGTCCTGCTACCACAACCCTC
320 GTGTGCTGTCGATCCCGCTGAC-GGTCCTGCTACCACAACCCTC
* * * * * *
26365410 GGTCCGACTGTGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGGCAACCCACGAAACGAGCGT
1 GATCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGT
** * * * ** * *
26365475 GCGGGCACTTAGTC-GACCG-GAGAGACAGAATGCGCAAGCC-AGGGATCAGCCCGGTCCCACCT
66 -CGGGTGCTCAGCCAG-TCGAGA-AGGTAGAATGCGCAAGCCGA-GGATC-GCCCAGTCCCCCCT
* * *
26365537 GCGTG-T-CGTCGATCCTGCTGTCGCAACCCTCTATTC-AGTCTGATCTTAGACTGGGAATGAAC
126 GCGTGCTAC--CGATCCTGCTGTCGCAACCCTCGATCCGA-TCCGATCTTAGACTGGGAATGAAC
26365599 TCCGTATGC
188 TCCGTATGC
26365608 CAAAGTCAAC
Statistics
Matches: 784, Mismatches: 117, Indels: 55
0.82 0.12 0.06
Matches are distributed among these distances:
353 2 0.00
354 8 0.01
355 232 0.30
356 3 0.00
360 1 0.00
361 1 0.00
362 1 0.00
363 1 0.00
364 1 0.00
366 5 0.01
367 2 0.00
368 212 0.27
369 314 0.40
370 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (362 bp):
GATCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGT
CGGGTGCTCAGCCAGTCGAGAAGGTAGAATGCGCAAGCCGAGGATCGCCCAGTCCCCCCTGCGTG
CTACCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGTGCTCAGCC
ACCGAGAGGCCGGTCGGAGAGGCATAATACGTAAGCAGAGATCAACCCAGTCCCCCTCTGTGTGC
TGTCGATCCCGCTGACGGTCCTGCTACCACAACCCTC
Found at i:26365262 original size:26 final size:26
Alignment explanation
Indices: 26365226--26365278 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26365216 CTGATCTGAT
26365226 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26365252 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26365278 C
1 C
26365279 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26366390 original size:26 final size:26
Alignment explanation
Indices: 26366361--26366413 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26366351 CCAATCCGAT
*
26366361 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAACGAACTCCGTATG
**
26366387 CTTAGACTGGGGACGAACTCCGTATG
1 CTTAGACTGGAAACGAACTCCGTATG
26366413 C
1 C
26366414 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAACGAACTCCGTATG
Found at i:26366776 original size:368 final size:366
Alignment explanation
Indices: 26366101--26366832 Score: 928
Period size: 368 Copynumber: 2.0 Consensus size: 366
26366091 AGAGAGCCCA
* * * *
26366101 GTCGAAGAGGCATAATACTCAAGCTGGGGATCAACCCAGGCCCCCTCTGCATGCTGCCGATCCTG
1 GTCGAAGAGGAATAATACGCAAGCCGGGGATCAACCCAGGCCCCCTCTGCATGCTGCCGATCCCG
* * * * * *
26366166 CTGCCAGTCCTGTTGCCACAACCCTCGGTCTGGCGGGGCTTAGACGTGGAATGTACTCCGTATAC
66 CTACCAGTCCTGTTACCACAACCCTCGATCCGACGGGGCATAGACGTGGAATGTACTCCGTATAC
* * * *
26366231 CTAAGCCAACCCATGAAACGAACGTGCGGGTGCTCAGTCGGTCGAAGAGGCAGAATGCGCAAGAC
131 CTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGAC
* ** * *
26366296 GGGGATCGACTTGGTCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCTATCCAATCCGAT
196 GAGGATCGACCCGGTCCCCCTGCGTGCTCTCGATCCTGCTGCCGCAACCCTCGATCCAATCCGAT
* * *
26366361 CTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGGGACGAACTCCGTATGCCTAAGTCAACCC
261 CTTAGACGGGAAATGAACTCCATATGCTTAGACTAGGGACGAACTCCGTATGCCTAAGTCAACCC
* * * *
26366426 ATGAAATGAGCATGCGGGCACTCAATCGATCGGAGAGGCTG
326 ACGAAACGAGCATGCGGGCACTCAATCGACCAGAGAGGCTG
* * * * *
26366467 GTCGAAGAGGAATAATACGCAAGCCGGGGATCAA-CCTGGTCCTCCTTTGCGTGCTGTCGATCCC
1 GTCGAAGAGGAATAATACGCAAGCCGGGGATCAACCCAGG-CCCCCTCTGCATGCTGCCGATCCC
* * * * *
26366531 GCTACCGGTCCTGTTACCACATCCTTCGATCCGACTGGGGCATAGATGTGGAATGTACTCTGTAT
65 GCTACCAGTCCTGTTACCACAACCCTCGATCCGAC-GGGGCATAGACGTGGAATGTACTCCGTAT
* * * * * * * *
26366596 GCCTTAGCCAACCCACGAAATGAGCGTGCGGGCGTTCTGCCGGCCGGAGAGGTAGAATGCGCAAG
129 ACCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAG
* **
26366661 CCGAGGATCGACCCGGTCCCCCCTGCGTGCTACT-GATCCTGCTGCCGCAACCCTCGATCCGGTC
194 ACGAGGATCGACCCGGT-CCCCCTGCGTGCT-CTCGATCCTGCTGCCGCAACCCTCGATCCAATC
* * *
26366725 CGATCTTAGACGGGGAATGAACTCTATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCA
257 CGATCTTAGACGGGAAATGAACTCCATATGCTTAGACTAGGGACGAACTCCGTATGCCTAAGTCA
* * * *
26366790 ACTCACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGAGGC
322 ACCCACGAAACGAGCATGCGGGCACTCAATCGACCAGAGAGGC
26366833 AGGATGCGCA
Statistics
Matches: 308, Mismatches: 54, Indels: 6
0.84 0.15 0.02
Matches are distributed among these distances:
365 4 0.01
366 77 0.25
367 92 0.30
368 134 0.44
369 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (366 bp):
GTCGAAGAGGAATAATACGCAAGCCGGGGATCAACCCAGGCCCCCTCTGCATGCTGCCGATCCCG
CTACCAGTCCTGTTACCACAACCCTCGATCCGACGGGGCATAGACGTGGAATGTACTCCGTATAC
CTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGAC
GAGGATCGACCCGGTCCCCCTGCGTGCTCTCGATCCTGCTGCCGCAACCCTCGATCCAATCCGAT
CTTAGACGGGAAATGAACTCCATATGCTTAGACTAGGGACGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCATGCGGGCACTCAATCGACCAGAGAGGCTG
Found at i:26367979 original size:158 final size:156
Alignment explanation
Indices: 26367487--26367979 Score: 501
Period size: 159 Copynumber: 3.1 Consensus size: 156
26367477 GCTTAGAGAT
* * * * *
26367487 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCTGGAG
1 GGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAG
* *
26367552 AGGCAAAATGCGCAAGCC-GAGGATTGACCTGGTCTCCCCCTGTGTGCTGTCGATCCTGCTGCCA
66 AGGCAAAATGCGCAAGCCAG-GGATCGGCCTGG--TCCCCCTGTGTGCTGTCGATCCTGCTGCCA
* * *
26367616 CAACCCTCGGTCTGGTCAAATCTTAGATTG
128 CAACCCTCGATCTGGTC-GATCTTAGACTG
* * * * * * *
26367646 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGTGTGCGGGTGCT-AAGCCGACCGAA
1 GGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCGGGCGCTCAA-CCGGCCGGA
* * *
26367710 GAGGCATAATGCGCAAGCCAGAGATCGGCCTGGTCCCCTTCTGTGTGCTG-CCAGTCCTGCTGCC
65 GAGGCAAAATGCGCAAGCCAGGGATCGGCCTGGTCCCC--CTGTGTGCTGTCGA-TCCTGCTGCC
* * * **
26367774 ACAACCCTCGATCCAGCTGGGGCTT-GACAT-
127 ACAACCCTCGAT-CTGGTCGATCTTAGAC-TG
* * * * * *
26367804 GGATTGAGCTCCCTATGCCTAAGACAACCCATGAAACGGGCGTACGGGCGCTCAACCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAG
* * * * **
26367869 AGGTAGAATGTGCAAGCCAGGGATCGGCCCGGTCACCCCTGTGTGCTGTCGATCCTGCTGCTGCA
66 AGGCAAAATGCGCAAGCCAGGGATCGGCCTGGTC-CCCCTGTGTGCTGTCGATCCTGCTGCCACA
26367934 ACCCTCGATCTGGTTCGATCTTAGACTG
130 ACCCTCGATCTGG-TCGATCTTAGACTG
*
26367962 GGAATGAACTCCATATGC
1 GGAATGAACTCCGTATGC
26367980 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 53, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
156 2 0.01
157 41 0.15
158 103 0.38
159 118 0.44
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCCTAAGACAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAG
AGGCAAAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCTGTGTGCTGTCGATCCTGCTGCCACAA
CCCTCGATCTGGTCGATCTTAGACTG
Found at i:26367989 original size:26 final size:26
Alignment explanation
Indices: 26367953--26368005 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26367943 CTGGTTCGAT
26367953 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26367979 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26368005 C
1 C
26368006 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26368292 original size:355 final size:347
Alignment explanation
Indices: 26367755--26368759 Score: 1158
Period size: 347 Copynumber: 2.9 Consensus size: 347
26367745 CCCTTCTGTG
* * *
26367755 TGCTGCCAGTCCTGCTGCCACAACCCTCGATCC-AGCTGGGGCTT-GACATGGATTG-AGCTCCC
1 TGCTGCCGGTCCTGCTGCCACAACCCTCGATCCGA-CTGGGGCTTAGACATGGAATGTA-CTCCG
* * * * *
26367817 TATGCCTAAGACAACCCATGAAACGGGCGTA-CGGGCGCTCAACCGGCCGGAGAGGTAGAATGTG
64 TATGCCTAAGCCAACCCATGAAACGAGCG-AGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCG
* * * * *
26367881 CAAGCCAGGGATCGGCCCGGTCACCCCTGTGTGCTGTCGATCCTGCTGCTGCAACCCTCGATCTG
128 CAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGC-GCAACCCTCGATCCG
*
26367946 GTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
192 GTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
* * * * * *
26368011 TCAACCCATGAAACGAACGTACGAGTGCTTAGCCGGCCGGAGAGGCATAATGCGCAAGTTGGGGA
257 TCAACCCATGAAACGAGCGTGCGAGTGCTCAGCCGGCCGGAGAGGCACAAT-CG-AAG--AGGCA
* * ** * *
26368076 TCAGCCCGGTCCCCCTCTGCATGCTACCCATCT
318 T-AACAC-GTAACCC-CGGCATGCTACCCATCC
* * *
26368109 TGCTGCCGGTCTTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGTTCTCTGTA
1 TGCTGCCGGTCCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGTACTCCGTA
* *
26368174 TGCCTAAGCCAACCCACGAAACGAGCGAGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAT
66 TGCCTAAGCCAACCCATGAAACGAGCGAGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAA
* * * *
26368239 GCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCAATCCTACTGTCGCAACCCTCGATCCGG-T
131 GCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTG-CGCAACCCTCGATCCGGTT
* *
26368303 CTGATCTTAGACTGAGAATGAACTCCGTATGCTTGGACTGGGGATGAACTCCGTATGCCTAAGTC
195 C-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC
* ** * * * * *
26368368 AACCCATGAAACGAGCGTGCCAACGCCCAACTGGCCGAAGAGGC-CGATCGAAGAGGCATAACAC
259 AACCCATGAAACGAGCGTGCGAGTGCTCAGCCGGCCGGAGAGGCACAATCGAAGAGGCATAACAC
* * * * *
26368432 GTAAGCCGGGGATGCTGCCGATCC
324 GTAACCCCGGCATGCTACCCATCC
* * * ** **
26368456 TGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTTGGGGCTTAGATGTGGAATGTACTCCGTA
1 TGCTGCCGGTCCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGTACTCCGTA
* * ** *
26368521 TGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATACGCAA
66 TGCCTAAGCCAACCCATGAAACGAGCGAGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAA
* * * ** * *
26368586 GCAGGGGATCGACCCGGTCCCCCCTGCATTTTGCCGATCCTGCTGCCGCAACCCTCGATCCGATC
131 GCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTG-CGCAACCCTCGATCCGGTT
* * * *
26368651 CAATCTTAAACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCA
195 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* * *
26368716 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCA
260 ACCCATGAAACGAGCGTGCGAGTGCTCAGCCGGCCGGAGAGGCA
26368760 GGATACGCAA
Statistics
Matches: 548, Mismatches: 95, Indels: 22
0.82 0.14 0.03
Matches are distributed among these distances:
347 267 0.49
348 5 0.01
349 3 0.01
350 4 0.01
352 3 0.01
353 2 0.00
354 45 0.08
355 218 0.40
356 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (347 bp):
TGCTGCCGGTCCTGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGTACTCCGTA
TGCCTAAGCCAACCCATGAAACGAGCGAGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCGCAA
GCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCGCAACCCTCGATCCGGTTC
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
CCCATGAAACGAGCGTGCGAGTGCTCAGCCGGCCGGAGAGGCACAATCGAAGAGGCATAACACGT
AACCCCGGCATGCTACCCATCC
Found at i:26368459 original size:12 final size:12
Alignment explanation
Indices: 26368444--26368474 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
26368434 AAGCCGGGGA
26368444 TGCTGCCGATCC
1 TGCTGCCGATCC
26368456 TGCTGCCGATCC
1 TGCTGCCGATCC
26368468 TGCTGCC
1 TGCTGCC
26368475 ACAACCCTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.06, C:0.42, G:0.26, T:0.26
Consensus pattern (12 bp):
TGCTGCCGATCC
Found at i:26368691 original size:26 final size:26
Alignment explanation
Indices: 26368655--26368707 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26368645 CCGATCCAAT
26368655 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
* *
26368681 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
26368707 C
1 C
26368708 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCTGTATG
Found at i:26370530 original size:14 final size:14
Alignment explanation
Indices: 26370508--26370539 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
26370498 TAAGCTTTCT
26370508 GATGATGCTCCGAC
1 GATGATGCTCCGAC
*
26370522 GATGGTGCTCCGAC
1 GATGATGCTCCGAC
26370536 GATG
1 GATG
26370540 CTCTAACGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.25, G:0.34, T:0.22
Consensus pattern (14 bp):
GATGATGCTCCGAC
Found at i:26370912 original size:26 final size:26
Alignment explanation
Indices: 26370883--26370935 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26370873 CTGGTCCGAT
26370883 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26370909 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26370935 C
1 C
26370936 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26373184 original size:26 final size:26
Alignment explanation
Indices: 26373148--26373200 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26373138 CCGGTCCAAT
* *
26373148 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26373174 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26373200 C
1 C
26373201 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26374281 original size:159 final size:157
Alignment explanation
Indices: 26373896--26374335 Score: 415
Period size: 159 Copynumber: 2.8 Consensus size: 157
26373886 AGCCCCGTAT
* * *
26373896 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGAGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGGCTAAGCCAACCCACGAAACGAGCGT-AGGGCGCTCAG
* * * *
26373961 TCAGTCGGAGAGGCAGAATGCGCAAACCGAGGATC-GACCCGATCCCCCCCTGTGTGCTGTCAAT
65 TCGGTTGGAGAGGCAGAATGCGCAAACCGGGGATCAG-CCCGAT-CCCCCCTGCGTGCTGTCAAT
** * *
26374025 CCTGCTATCGCAACCCTCAGTCCGATCTGA
128 CCCACTACCACAACCCTCAGTCCGATCTGA
* * * ** * ** *
26374055 TCCTAGAC-TGGGAATGAACTCCATAT-GCATAAGTCAACCCATAAAACGAGCGTGTGGGCATTG
1 GCTTAGACAT-GGAATGAACTCCATATGGC-TAAGCCAACCCACGAAACGAGCGT-AGGGCGCTC
* * * * **
26374118 AGTCGGTTGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTGTCGG
63 AGTCGGTTGGAGAGGCAGAATGCGCAAACCGGGGATCAGCCCGATCCCCC-CTGCGTGCTGTCAA
* * *
26374183 TCCCACTGCCACAACCCTC-GATCCGGT-TGGG
127 TCCCACTACCACAACCCTCAG-TCCGATCT-GA
* * * *
26374214 GCTTAGACATGGAATGACCTCCCTATGGCTAAGCCAACCCACGAAATGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGGCTAAGCCAACCCACGAAACGAGCGTA-GGGCGCTCAG
* * *
26374279 TCGGCTGGAGAGGTAGAATGCGTAAACCGGGGATCAGCCC-AGTCCCCCCTGCGTGCT
65 TCGGTTGGAGAGGCAGAATGCGCAAACCGGGGATCAGCCCGA-TCCCCCCTGCGTGCT
26374336 ATCGATCTTG
Statistics
Matches: 222, Mismatches: 49, Indels: 21
0.76 0.17 0.07
Matches are distributed among these distances:
158 18 0.08
159 200 0.90
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGGCTAAGCCAACCCACGAAACGAGCGTAGGGCGCTCAGT
CGGTTGGAGAGGCAGAATGCGCAAACCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCAATCCC
ACTACCACAACCCTCAGTCCGATCTGA
Found at i:26374425 original size:26 final size:26
Alignment explanation
Indices: 26374373--26374425 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26374363 CCGGTCTGAT
*
26374373 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGCATG
* *
26374399 CTTAGACTGGGGATGAAC-TCTGCATG
1 CTTAGACTAGGAATGAACTTC-GCATG
26374425 C
1 C
26374426 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGCATG
Found at i:26375080 original size:26 final size:26
Alignment explanation
Indices: 26375044--26375096 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26375034 CTGATCCGAT
26375044 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26375070 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26375096 C
1 C
26375097 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26375447 original size:26 final size:26
Alignment explanation
Indices: 26375411--26375463 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26375401 CCGGTCTGAT
*
26375411 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATAAACTCTATATG
* *
26375437 CTTAGATTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCTATATG
26375463 C
1 C
26375464 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCTATATG
Found at i:26375656 original size:355 final size:360
Alignment explanation
Indices: 26374845--26375849 Score: 1150
Period size: 355 Copynumber: 2.8 Consensus size: 360
26374835 CTCTCCGTAT
* * * * * * * * * *
26374845 GCTACTGATCCCGTTGCCACAACCCTCGGTCTGATTGGAGCTTATACATGGAATG-AGGTCCCTA
1 GCTACCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTA-CTCCGTA
* * * * * * * * *
26374909 TGCCTAAGCCAACCCACGAAAACGGGTGTACGGGCGCTCAACCGATCGGAGAGGCAGAATGAGTA
65 TGCCTAAGCCAACCCA-GGAAACGAGCGTGCGGGCGCTCAGCTGGTCAGAGAGGCAGAATGCGTA
* * * * * *
26374974 AGTCGAGGATCAGCCTGGTCCAC-CCTGCGTGTTGTCGATCCTGCTGTCGCAACCCTCGGTCTGA
129 AGTCGAGGATCGGCTTGGTCC-CTCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGATCCGA
*
26375038 TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
193 TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGT
* *
26375103 CAACCCATGAAACAAGCGTGCAGGCACTCTGTCAACTGGAGAGGCTGGCCGGAAGGCATAATGCT
257 CAACCCATGAAACAAGCGTGCAGGCAC-C-GTCAACT---GAGGCTGGCAGG-AGGCATAATGCG
* * *
26375168 CAAGCCGAGGATCAACTCGGTCCCCCTCTACGTGCTACCGATCCT
316 CAAGCCGAGGATCAACCCGGTCCCCCTCTACATGCTACCGATCCC
** * *
26375213 GCTGTCGGTCCTGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACGTGGAATGTACTCCGTAT
1 GCTACCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTAT
* *
26375278 GCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCTGGTCAGAGAGGCAGAATGCGTAAG
66 GCCTAAGCCAACCCAGGAAACGAGCGTGCGGGCGCTCAGCTGGTCAGAGAGGCAGAATGCGTAAG
* * * * * * * * *
26375343 CCGGGGATCGGCTTGATCCCTCCTGTGTGCTGTTGATCCTACTATTGCAACCCTTGATCCGGTCT
131 TCGAGGATCGGCTTGGTCCCTCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGATCCGATCT
* * * *
26375408 GATCTTAGACTGGGAATGAACTCTATATGCTTAGATTGGGAATAAACTCTGTATGCCTAAGTCAA
196 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
26375473 CCTATGAAACGAGCGTGCGGGCA-C-TCAACT-AGTC-GG-AGG-GGCATAATGCGCCAGTCGGG
260 CCCATGAAACAAGCGTGCAGGCACCGTCAACTGAGGCTGGCAGGAGGCATAATGCGCAAGCCGAG
*
26375532 GATCAACCCGGTCCCCCTCTATATGCTACCGATCCC
325 GATCAACCCGGTCCCCCTCTACATGCTACCGATCCC
* *
26375568 GCTACCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGATGTGAAATGTACTCCGTAT
1 GCTACCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTAT
* * * * *
26375633 GCCTAAGCCAACCCAGGAAACGAGCGTGTGGGCACTCAG-TCGGCCAGAGAGGCAGATTGCGCAA
66 GCCTAAGCCAACCCAGGAAACGAGCGTGCGGGCGCTCAGCT-GGTCAGAGAGGCAGAATGCGTAA
* * * *
26375697 GTCAAGGATCGGCTCGGT-CCTCCTAGCGTGCTGTCGATCCTGCTACCGCAA-CCTCCAATCCGA
130 GTCGAGGATCGGCTTGGTCCCTCCT-GCGTGCTGTCGATCCTGCTATCGCAACCCT-CGATCCGA
* *
26375760 TCTGGTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGT
193 TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG-GGATGAACTCCGTATGCCTAAGT
*
26375825 CAACCCACGAAACAAGCGTGCAGGC
257 CAACCCATGAAACAAGCGTGCAGGC
26375850 GCACAGCCGA
Statistics
Matches: 536, Mismatches: 94, Indels: 27
0.82 0.14 0.04
Matches are distributed among these distances:
354 10 0.02
355 278 0.52
356 2 0.00
357 2 0.00
358 2 0.00
359 3 0.01
363 6 0.01
365 1 0.00
366 4 0.01
367 163 0.30
368 64 0.12
369 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (360 bp):
GCTACCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTAT
GCCTAAGCCAACCCAGGAAACGAGCGTGCGGGCGCTCAGCTGGTCAGAGAGGCAGAATGCGTAAG
TCGAGGATCGGCTTGGTCCCTCCTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGATCCGATCT
GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAAC
CCATGAAACAAGCGTGCAGGCACCGTCAACTGAGGCTGGCAGGAGGCATAATGCGCAAGCCGAGG
ATCAACCCGGTCCCCCTCTACATGCTACCGATCCC
Found at i:26375795 original size:26 final size:26
Alignment explanation
Indices: 26375766--26375818 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26375756 CCGATCTGGT
26375766 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
26375792 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
26375818 C
1 C
26375819 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:26376909 original size:159 final size:159
Alignment explanation
Indices: 26376471--26376900 Score: 438
Period size: 158 Copynumber: 2.7 Consensus size: 159
26376461 AGCTTCATAT
* *
26376471 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAGCTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
26376536 TCGGTTGGAAAGGTAGAATGTGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGTCAATC
66 TCGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTCTGCCTGCTGTCAATC
* * * * *
26376600 CTTCTACCATAACCCTCGGTCTGGTCTGA
131 CTGCTACCACAACCCACGGTCCGATCTGA
* ** * * * * *
26376629 TCTTAGAC-TAGGAATGAGCTCTGTATGCATAAGTCAATCGACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAGCTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * * * * * * *
26376693 ACCGATCGAAAAGGCATAATGCACAAGTCGGGGATTGGCTCGGTCCCCCTCTGCCTGCTGTCGAT
65 GTCGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTCTGCCTGCTGTCAAT
* *
26376758 -CTCGCTGCCACAACCCACGGTCCGAT-TGGG
130 CCT-GCTACCACAACCCACGGTCCGATCT-GA
* * * *
26376788 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAAAG-GCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAGCTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
26376852 TCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCCGGTCCCCCT
66 TCGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCT
26376901 GCATCCTGCC
Statistics
Matches: 212, Mismatches: 55, Indels: 10
0.77 0.20 0.04
Matches are distributed among these distances:
157 1 0.00
158 142 0.67
159 68 0.32
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAGCTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGGTCGGAAAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTCTGCCTGCTGTCAATC
CTGCTACCACAACCCACGGTCCGATCTGA
Found at i:26376981 original size:26 final size:26
Alignment explanation
Indices: 26376945--26376997 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26376935 CCGGTTTGAT
*
26376945 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26376971 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26376997 C
1 C
26376998 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26377341 original size:26 final size:26
Alignment explanation
Indices: 26377312--26377361 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26377302 CCGGTTCAAT
26377312 CTTAGACTAGGAATGAACTCCGTACG
1 CTTAGACTAGGAATGAACTCCGTACG
* *
26377338 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
26377362 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTACG
Found at i:26377509 original size:367 final size:367
Alignment explanation
Indices: 26376761--26377700 Score: 1122
Period size: 367 Copynumber: 2.6 Consensus size: 367
26376751 TGTCGATCTC
* ** * * *
26376761 GCTGCCACAACCCACGGTCCGATTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAA
1 GCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCATAAGCCAA
* * *
26376825 CCCATGAAAAG-GCGTGCGGGTGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATTG-
65 CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGA-TGA
* * * * * * *
26376888 GCCCGGTCCCCCTGCATCCTGCCGATCCTACTATCGCAACCCTCGATCCGGTTTGATCTTAGATT
129 GCCCGATCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATCCGGTTCGATCTTAGACT
* *
26376953 GGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATG
194 GGGAATGAACTCCATACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* *
26377018 AGCGTACGGGCGCTCAGCCGATCGGAGAGGCCGACCGAAGAGGCATAATGCGCAAGTCAGGGACC
259 AGCGTACAGGCGCTCAGCCGATAGGAGAGGCCGACCGAAGAGGCATAATGCGCAAGTCAGGGACC
* ** * * *
26377083 AGCCTGGTCCCCGTCTATGTGCTGTCGATCCCGCTGCCAGTCCT
324 AACCCAGTCCCCGTCTACGTGCCGTCGATCCCGCTACCAGTCCT
* * * * * * * *
26377127 ACTGTCATAACCCTCGGTCGGGCTGGGGCTTCGACGTGGAATGTACTTCGTATGCAAAAGTCAAC
1 GCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCATAAGCCAAC
** * *
26377192 CCACGAAACGAGCGTGCGAACGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATGAGT
66 CCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATGAGC
* * * * * *
26377257 TCGATTCCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCCGGTTCAATCTTAGACTAG
131 CCGATCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATCCGGTTCGATCTTAGACTGG
* *
26377322 GAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
196 GAATGAACTCCATACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * ** * * *
26377387 CGTATAGGCGCTCAGGCGGTAGGAGAGGCTGGTCGGAGAGGCATAATGTGCAA-TCCAGGGATCA
261 CGTACAGGCGCTCAGCCGATAGGAGAGGCCGACCGAAGAGGCATAATGCGCAAGT-CAGGGACCA
* * *
26377451 ACCCAGTCCCCTTTTACGTGCCGTCGATCCCGCTACCGGTCCT
325 ACCCAGTCCCCGTCTACGTGCCGTCGATCCCGCTACCAGTCCT
** *
26377494 GCTGCCACAACCCTCGGTTTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCTTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCATAAGCCAAC
* ** * * *
26377559 CCACGAAACGAGCGTGCGGGCGCTTAACCGGTC-GAGGAGGCAGAATGCGTAAGCCGGGGATCGA
66 CCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGA-GAGGCAGAATGCGCAAGCCAGGGAT-GA
* *
26377623 -CCCGATCCCCCCCTGCGTGCTGTCGATCCTACTGAT-GCAACCCTCGGTCCAG-TCTGATCTTA
129 GCCCGAT--CCCCCTGCGTGCTGTCGATCCTACTG-TCGCAACCCTCGATCCGGTTC-GATCTTA
26377685 GACTGGGAATGAACTC
190 GACTGGGAATGAACTC
26377701 TGTATGCATA
Statistics
Matches: 478, Mismatches: 86, Indels: 17
0.82 0.15 0.03
Matches are distributed among these distances:
366 62 0.13
367 353 0.74
368 4 0.01
369 58 0.12
370 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (367 bp):
GCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCATAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATGAGC
CCGATCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGATCCGGTTCGATCTTAGACTGG
GAATGAACTCCATACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTACAGGCGCTCAGCCGATAGGAGAGGCCGACCGAAGAGGCATAATGCGCAAGTCAGGGACCAA
CCCAGTCCCCGTCTACGTGCCGTCGATCCCGCTACCAGTCCT
Found at i:26377791 original size:159 final size:155
Alignment explanation
Indices: 26377522--26378024 Score: 469
Period size: 159 Copynumber: 3.2 Consensus size: 155
26377512 TTGGCTGGGG
* * *
26377522 CTTAGAC-GTGGAATGTACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAA
1 CTTAGACTG-GGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCGC-TAA
* * * * * * *
26377586 CCGGTCGAGGAGGCAGAATGCGTAAGCCGGGGATC-GACCCGATCCCCCCCTGCGTGCTGTCGAT
64 CCAGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGACCAG-TCCCCCCCTGCGTGCTGT-GGT
*
26377650 CCTACTGATGCAACCCTCGGTCCAGTCTGAT
127 CCTACTG-TGCAACCCTCGATCC-GTCTGAT
* * * *
26377681 CTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACCCACAAAACGAGCGTGCAGGCGCTGACC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCGCTAACC
* * *
26377746 TAGCCGAAGAGGCATAATGCACAAGCCGAGGATCGGACCAGTCCCCCTCTGCGTGCTGGTGGTCC
66 -AGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGACCAGTCCCCCCCTGCGTGCT-GTGGTCC
** * * * **
26377811 -AGCTGCCACAACCCTCAATCTGGCTGGGG
129 TA-CTG-TGCAACCCTCGATCCGTCT-GAT
* * * * *
26377840 CTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCGCT-AA
* * * * * *
26377904 CCAACC-AGAGAGGCAGAATACGCAAGCTGAGGATCGGCCCGGT-CCCCCCTGCATGCTGTTGGT
64 CCAGCCGA-AGAGGCAGAATGCGCAAGCCGAGGATCGGACCAGTCCCCCCCTGCGTGCTG-TGGT
*
26377967 CCTACTGTCGCAACCCTCGATCCGATCCGAT
127 CCTACTGT-GCAACCCTCGATCCG-TCTGAT
*
26377998 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
26378025 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 55, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
157 2 0.01
158 65 0.24
159 197 0.72
160 11 0.04
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (155 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCGCTAACC
AGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGGACCAGTCCCCCCCTGCGTGCTGTGGTCCTA
CTGTGCAACCCTCGATCCGTCTGAT
Found at i:26378034 original size:26 final size:26
Alignment explanation
Indices: 26377998--26378050 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26377988 CCGATCCGAT
*
26377998 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGCATG
*
26378024 CTTAGACTGGGGATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCTGCATG
26378050 C
1 C
26378051 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGCATG
Found at i:26379316 original size:686 final size:677
Alignment explanation
Indices: 26377135--26379382 Score: 2523
Period size: 672 Copynumber: 3.3 Consensus size: 677
26377125 CTACTGTCAT
* * * * * ** *
26377135 AACCCTCGGTCGGGCTGGGGCTTCGACGTGGAATGTA-CTTCGTATGCAAAAGTCAACCCACGAA
1 AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCACGAA
** * ** *
26377199 ACGAGCGTGCGAACGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCC-AGGGAT-GAGTTCGAT
65 ACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGA-CCCGGT
* * * *
26377262 -TCCCCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCCGGTTCAATCTTAGACTAGGAAT
128 CCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAAT
* * *
26377326 GAACTCCGTACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTA
193 GAACTCCGTATGCTTAGACTGGGGATGAACT-CGCATGCCTAAGTCAACCCACGAAACGAGC--A
* * * *
26377391 TAGGCGCTCAGGCGGTAGGAGAGGCTGGTCGGAGAGGCATAATGTGCAA-TCCAGGGATCAACCC
255 TAGGCGCTCAGCCGGTCGAAGAGGCTGGTCGGAGAGGCATAATGCGCAAGT-CAGGGATCAACCC
* * * * ** *
26377455 AGTCCCCTTTTACGTGCCG-TCGATCCCGCTACCGGTCCTGCTGCCACAACCCTCGGTTTGGCTG
319 GGTCCCCTTCTGCGTGCTGCT-GATCCC-CT-CCGGTCCTGCT-CCACAACCCTC-GTCCGACTG
* *
26377519 GGGCTTAGACGTGGAATGTACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTT
379 GGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * *
26377584 AACCGGTCGAGGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGCTGTCGA
444 AGCCGGTCGA-GAGGTAAAATGCGCAAGCTGGGGATCGACCTGAT-CCCCCCTGCGTGCTATCGA
** * * *
26377649 TCCTACTGATGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCATAAG
507 TCCTACTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTTCGTATGCATAAG
* * * * * *
26377713 TCAACCCACAAAACGAGCGTGCAGGCGCTGACCTAGCCGAAGAGGCATAATGCACAAGCCGAGGA
572 TCAACCCACGAAACGAGCGTACAGGCGCTGAGCTGGCCGAAGAGGCATAATGCGCAAGCCGGGGA
*
26377778 TCGGACCAGTCCCCCTCTGCGTGCTGGTGGTCCAGCTGCCAC
637 TCGGACCAGTCCCCCTCTGCGTGCT-GTGGTCCAGCTACCAC
** *
26377820 AACCCTCAATCTGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAA
1 AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAA
* * * * * *
26377885 TGAGCGTGCGGGCGCTCAGCCAACCAGAGAGGCAGAATACGCAAGCTGAGGATCGGCCCGGTCCC
66 CGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCC
* * * * * *
26377950 CCCTGCATGCTGTTGGTCCTACTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAA
131 CCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAA
* * *
26378015 CTCTGTATGCTTAGACTGGGGATGAACTCTGCATGCCTAAGTCAACCCACGAAACGAGCGTGTGG
196 CTCCGTATGCTTAGACTGGGGATGAACTC-GCATGCCTAAGTCAACCCACGAAACGAGC--ATAG
* * * * * * *
26378080 GCACTCAGCCGATCGAAGAGGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGATC
258 GCGCTCAGCCGGTCGAAGAGGCTGGTCGGAGAGGCATAATGCGCAAGTCAGGGATCAACCCGGTC
* *
26378145 CCCTTCTGTGTGCTGCTGAT---C-CC-GT--TG--CCACAACCCTCGGCCTGACTGGGGCTTAG
323 CCCTTCTGCGTGCTGCTGATCCCCTCCGGTCCTGCTCCACAACCCTCGTCC-GACTGGGGCTTAG
* * * * *
26378201 ACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGCGCTCAGCCGGCT
387 ACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG-T
* * * * * *
26378266 GGAGAGGT-AGATGCGCAAG-TCGGGGATTGA-CTCGATCCCTCCTGCATGCTATTGATCCTACT
451 CGAGAGGTAAAATGCGCAAGCT-GGGGATCGACCT-GATCCCCCCTGCGTGCTATCGATCCTACT
** * *
26378328 GCCGCAATGCTCGATCTGGTCTGATCTTAGACTGGGAATGAAC-TCCGTATGCATAAGTCAACCC
514 GCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTTCGTATGCATAAGTCAACCC
* * * *
26378392 AGGAAACGAGCGTAC-GGTCGCTGAGCTGGCCGAAGAGGCATAATGCGCAAGTCAGAGATCGG-C
579 ACGAAACGAGCGTACAGG-CGCTGAGCTGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGAC
* * *
26378455 CTGGTCCCCCTCTGTGTGCTGTCGGTCCCGCTGA-CAC
643 C-AGTCCCCCTCTGCGTGCTGT-GGTCCAGCT-ACCAC
* * *
26378492 AACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACTCATGAAA
1 AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAA
* * * *
26378557 TGGGCGTGCGGGCGCTCAGCCGACTGGAGAGGCAGAATGCGCAAGCTGAGGATC-AGCCCGGTCC
66 CGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGGTCC
* * * * *
26378621 CCTCTGCGTGCTGTCGATCCTGCTATCGCTACCCTCGATCCGGTCTGGTCTTAGACTAGGAATGA
130 CCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGA
* * *
26378686 ACTCCGTATGCTTAGACCGGGGATGAACTGCGCATGCCTAAGTCAACCCACAAAATGAGCATACG
195 ACTCCGTATGCTTAGACTGGGGATGAACT-CGCATGCCTAAGTCAACCCACGAAACGAGCATA-G
* * *
26378751 TACGCTCAGCCGGTCGAAGAGGCTGGCCGGAGAGCCATAATGCGCAAGTCAGGGATCAACCCGGT
258 -GCGCTCAGCCGGTCGAAGAGGCTGGTCGGAGAGGCATAATGCGCAAGTCAGGGATCAACCCGGT
* *
26378816 CCCCCTCTGCGTGCTGCTGATCCCACTGCCGGTCCTGCTACCACAACCCTCGATCCGACTGGGGT
322 CCCCTTCTGCGTGCTGCTGATCCC-CT-CCGGTCCTGCT-CCACAACCCTCG-TCCGACTGGGGC
* * **
26378881 TTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCTATAAAACGAGCGTGCGGGCGCTCAGCC
383 TTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * *
26378946 GGTCAGAGAGGTAAAATGCGCAAGCTGCGGATCGACCTGGTCCCCCCTGCGTGCTACCGATCCTA
448 GGTC-GAGAGGTAAAATGCGCAAGCTGGGGATCGACCTGATCCCCCCTGCGTGCTATCGATCCTA
* ** *
26379011 CTGCCACAACCCTCGATCCGGTCCAATCTTAGATTGGGAATGAACTTTCGTATGCATAAGTCAAC
512 CTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTTCGTATGCATAAGTCAAC
* * *
26379076 CCACGAAACGAGCGTTCAGGCACTGAGCTGGCCAAAGAGGCATAATGCGCAAGCCGGGGATCGGA
577 CCACGAAACGAGCGTACAGGCGCTGAGCTGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGA
* *
26379141 CCAATCCCCCTCTACGTGCTGCTGGTCCAGCTACCAC
642 CCAGTCCCCCTCTGCGTGCTG-TGGTCCAGCTACCAC
* * ** * * * * **
26379178 AATCCTCGGTCCGATTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCTTAAGCTAACCCTTGAA
1 AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCACGAA
* ** * * **
26379242 ACGAGCGTGCGGGTGCTCAGCCGGTCGGGGAGGCAGAATGTGCAAGCCGAGGATCGACTTGGTCC
65 ACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCC
* ** * *
26379307 CCCCTGCGTGCTGTCGATCCTGTTGTTACAACCTTC-AGTCCGGTCCGATCTTAGACTGGGAATG
130 CCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGA-TCCGGTCCGATCTTAGACTAGGAATG
*
26379371 AACTCCATATGC
194 AACTCCGTATGC
26379383 ATAAGTCAAC
Statistics
Matches: 1302, Mismatches: 216, Indels: 89
0.81 0.13 0.06
Matches are distributed among these distances:
670 1 0.00
671 7 0.01
672 450 0.35
673 21 0.02
674 82 0.06
675 3 0.00
676 1 0.00
677 2 0.00
678 2 0.00
679 4 0.00
680 2 0.00
681 2 0.00
682 1 0.00
683 1 0.00
684 86 0.07
685 180 0.14
686 449 0.34
687 8 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (677 bp):
AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAA
CGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCC
CCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAA
CTCCGTATGCTTAGACTGGGGATGAACTCGCATGCCTAAGTCAACCCACGAAACGAGCATAGGCG
CTCAGCCGGTCGAAGAGGCTGGTCGGAGAGGCATAATGCGCAAGTCAGGGATCAACCCGGTCCCC
TTCTGCGTGCTGCTGATCCCCTCCGGTCCTGCTCCACAACCCTCGTCCGACTGGGGCTTAGACGT
GGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGAGA
GGTAAAATGCGCAAGCTGGGGATCGACCTGATCCCCCCTGCGTGCTATCGATCCTACTGCCGCAA
CCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTTCGTATGCATAAGTCAACCCACGAAAC
GAGCGTACAGGCGCTGAGCTGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCGGACCAGTCCCC
CTCTGCGTGCTGTGGTCCAGCTACCAC
Found at i:26379361 original size:318 final size:315
Alignment explanation
Indices: 26378841--26379699 Score: 1040
Period size: 317 Copynumber: 2.7 Consensus size: 315
26378831 GCTGATCCCA
* * * * *
26378841 CTGCCGGTCCTGCTACCACAACCCTCGATCCGACTGGGGTTTAGATGTGGAATGTACTCCGTATG
1 CTGCTGGTCCAGCTACCACAA-CCTCGATCCGATTGGGGCTTAGACGTGGAATGTACTCCGTATG
* * *
26378906 CCTAAGCCAA-CCTATAAAACGAGCGTGCGGGCGCTCAGCCGGTCAGAGAGGTAAAATGCGCAAG
65 CCTAAGCCAACCCT-TAAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGTAGAATGCGCAAG
* * ** * **
26378970 CTGCGGATCGACCTGGTCCCCCCTGCGTGCTACCGATCCTACTGCCACAACCCTCGATCCGGTCC
129 CCGAGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTTACAACCCTCG-TCCGGTCC
* * * *
26379035 AATCTTAGATTGGGAATGAACTTTCGTATGCATAAGTCAACCCACGAAACGAGCGTTCAGGCACT
193 GATCTTAGACTGGGAATGAAC-TCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACT
*
26379100 GAGCTGGCCAAAGAGGCATAATGCGCAAGCCGGGGATCGGACCAATCCCCCTCTACGTG
257 GAGCTGGCCAAAGAGGCATAATGCGCAAGCCGAGGATCGGACCAATCCCCCTCTACGTG
*
26379159 CTGCTGGTCCAGCTACCACAATCCTCGGTCCGATTGGGGCTTAGACGTGGAATGTACTCCGTATG
1 CTGCTGGTCCAGCTACCACAA-CCTCGATCCGATTGGGGCTTAGACGTGGAATGTACTCCGTATG
* * * * * *
26379224 CTTAAGCTAACCCTTGAAACGAGCGTGCGGGTGCTCAGCCGGTCGGGGAGGCAGAATGTGCAAGC
65 CCTAAGCCAACCCTTAAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGTAGAATGCGCAAGC
* * *
26379289 CGAGGATCGACTTGGTCCCCCCTGCGTGCTGTCGATCCTGTTGTTACAACCTTCAGTCCGGTCCG
130 CGAGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTTACAACCCTC-GTCCGGTCCG
* * *
26379354 ATCTTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGA
194 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTGA
* ** *
26379419 GCTGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGACCCGTCCCCCTCTGCGTG
259 GCTGGCCAAAGAGGCATAATGCGCAAGCCGAGGATCGGACCAATCCCCCTCTACGTG
* * * * * * *
26379476 CTG-TCGGTCCAGCTGCCACAACTCTTGATCAGGTTGGGGCTTAGACATGGAAT-AAGCTCCCTA
1 CTGCT-GGTCCAGCTACCACAAC-CTCGATCCGATTGGGGCTTAGACGTGGAATGTA-CTCCGTA
** * ** **
26379539 TGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAATCGACCGGAGAGGTAGAATGCGCAA
63 TGCCTAAGCCAACCCTTAAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGTAGAATGCGCAA
* * * * * * * * *
26379604 GCCGGGGATCGGCCCGATCCCACCTACATGCTGTCGATCTTGCTGTTGCAACCCTCGGTCCGGTC
128 GCCGAGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTTACAACCCTC-GTCCGGTC
* * *
26379669 TGATCTTAAACTGAGAATGAACTCCGTATGC
192 CGATCTTAGACTGGGAATGAACTCCGTATGC
26379700 TTAGATTGGG
Statistics
Matches: 460, Mismatches: 76, Indels: 11
0.84 0.14 0.02
Matches are distributed among these distances:
316 3 0.01
317 272 0.59
318 181 0.39
319 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (315 bp):
CTGCTGGTCCAGCTACCACAACCTCGATCCGATTGGGGCTTAGACGTGGAATGTACTCCGTATGC
CTAAGCCAACCCTTAAAACGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGTAGAATGCGCAAGCC
GAGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTTACAACCCTCGTCCGGTCCGAT
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTGAGC
TGGCCAAAGAGGCATAATGCGCAAGCCGAGGATCGGACCAATCCCCCTCTACGTG
Found at i:26379406 original size:158 final size:157
Alignment explanation
Indices: 26378881--26379699 Score: 599
Period size: 159 Copynumber: 5.2 Consensus size: 157
26378871 CGACTGGGGT
* * * **
26378881 TTAGA-TGTGGAATGTACTCCGTATGCCTAAGCCAACCTATAAAACGAGCGTGCGGGCGCTCAGC
1 TTAGACTG-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * **
26378945 CGGTCAGAGAGGTAAAATGCGCAAGCTGCGGATCGACCTGGTCCCCCCTGCGTGCTACCGATCCT
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACC-GGTCCCCCCTGCGTGCTGTCGATCCT
* *
26379010 ACTGCCACAACCCTC-GATCCGGTCCAATC
129 GCTGCCACAACCCTCAG-TCCGGTCCGATC
* * * * * * *
26379039 TTAGATTGGGAATGAACTTTCGTATGCATAAGTCAACCCACGAAACGAGCGTTCAGGCACTGAGC
1 TTAGACTGGGAATGAAC-TCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * ** * *
26379104 TGGCCAAAGAGGCATAATGCGCAAGCCGGGGATCGGACCAATCCCCCTCTACGTGCTG-CTGGTC
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATC-GACCGGTCCCCC-CTGCGTGCTGTC-GATC
* * * * * ** **
26379168 CAGCTACCACAATCCTCGGTCCGATTGGGGC
127 CTGCTGCCACAACCCTCAGTCCGGTCCGATC
* * * ** *
26379199 TTAGAC-GTGGAATGTACTCCGTATGCTTAAGCTAACCCTTGAAACGAGCGTGCGGGTGCTCAGC
1 TTAGACTG-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
26379263 CGGTCGGGGAGGCAGAATGTGCAAGCCGAGGATCGACTTGGTCCCCCCTGCGTGCTGTCGATCCT
65 CGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGAC-CGGTCCCCCCTGCGTGCTGTCGATCCT
* ** *
26379328 GTTGTTACAACCTTCAGTCCGGTCCGATC
129 GCTGCCACAACCCTCAGTCCGGTCCGATC
* * * * * *
26379357 TTAGACTGGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGAGCT
1 TTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
26379422 GGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGACCCGTCCCCCTCTGCGTGCTGTCGGTCCA
66 GGCCGGAGAGGCAGAATGCGCAAGCCGAGGATC-GACCGGTCCCCC-CTGCGTGCTGTCGATCCT
* * * ** **
26379487 GCTGCCACAACTCT-TGATCAGGTTGGGGC
129 GCTGCCACAACCCTCAG-TCCGGTCCGATC
* * * * * *
26379516 TTAGACAT-GGAAT-AAGCTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAA
1 TTAGAC-TGGGAATGAA-CTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
26379579 TCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCACCTACATGCTGTCGATCT
64 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATC-GACCGGTCCCCCCTGCGTGCTGTCGATCC
*** * *
26379644 TGCTGTTGCAACCCTCGGTCCGGTCTGATC
128 TGCTGCCACAACCCTCAGTCCGGTCCGATC
* *
26379674 TTAAACTGAGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
26379700 TTAGATTGGG
Statistics
Matches: 500, Mismatches: 143, Indels: 36
0.74 0.21 0.05
Matches are distributed among these distances:
157 1 0.00
158 183 0.37
159 267 0.53
160 48 0.10
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
TTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCGGTCCCCCCTGCGTGCTGTCGATCCTGC
TGCCACAACCCTCAGTCCGGTCCGATC
Found at i:26380155 original size:367 final size:364
Alignment explanation
Indices: 26379472--26380797 Score: 1379
Period size: 367 Copynumber: 3.7 Consensus size: 364
26379462 TCCCCCTCTG
* * * * * * * * *
26379472 CGTGCTGTCGGTCCAGCTGCCACAACTCTTGATCAGGTTGGGGCTTAGACATGGAATAAGCTCCC
1 CGTGCTGCCGGTCCTGCAGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAGCTCCC
* * ** *
26379537 TATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGTGCTCAATCGACCGGAGAGGTAGAATGCGC
66 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGTAGAATGCGC
* * * *
26379602 AAGCCGGGGATCGGCCCGATCCCACCTACATGCTGTCGATCTTGCTGTTGCAACCCTCGGTCCGG
131 AAGCCGGGGATCGGCCCGATCCCCCCTACATGCTGTCGATCCTGCTGCTGCAACCCTCGATCCGG
* * * * *
26379667 TCTGATCTTAAACTGAGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCTATATGCCTAAGT
196 TCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGT
* *
26379732 CAACCCACAAAACGAGCGTGTGGGCGCTCAGCCAGTCGGAGAGGCCGTCGGAGAGGCATAATGCG
261 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCCGTCGGAGAGGCATAATGCG
*
26379797 TAAGCCGGGGATCAGCCCGGTCCTCTTTTATATGCTGCCGAT
326 TAAGCCGAGGATCAGCCCGGTCCTC--TT-TATGCTGCCGAT
* * * *
26379839 CGTGCTGCCGGTCCTGCAGTCACAACCCTCGGTCTGGCTGGGGCTTAGACTTGGAATGTGCTCCG
1 CGTGCTGCCGGTCCTGCAGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAGCTCCC
* * * ** *
26379904 TATGCCTAAGCCAACCCACGAAACGATCGTGCAGGCACTCAGCCGGTCGGAGAGGTAGAATGCGT
66 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGTAGAATGCGC
* * *
26379969 AAGTCGGGGATCGGCCCGGTCCCCCCTACATGCTGTCGATCCTGCTGCTGCAACCCTCTATCCGG
131 AAGCCGGGGATCGGCCCGATCCCCCCTACATGCTGTCGATCCTGCTGCTGCAACCCTCGATCCGG
*
26380034 TCTGATCTTAGATT-GGAATGAAATCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGT
196 TCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGT
* * * * * ** * * *
26380098 CAACTCACGAAACGAGTGTACGAGCGCTCAACCAGTCAAAAAAGCCGTCTAGAGAGGCATAATGC
261 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCCGTC-GGAGAGGCATAATGC
* * * * *
26380163 GTAAGTCGATGATCAGCCCAGT-CTC-----CCT--CTA-
325 GTAAGCCGAGGATCAGCCCGGTCCTCTTTATGCTGCCGAT
* * * *
26380194 CGTGCTGTCGATCCTGCTA-CCATAACCCTTGGT-TCGG-TAGGGGCTTAGACATGGAATGTA-C
1 CGTGCTGCCGGTCCTGC-AGCCACAACCCTCGGTCT-GGCT-GGGGCTTAGACATGGAATG-AGC
* * * ** * *
26380255 TTCATATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAACCGGTCGAAGAGGCAGAAT
62 TCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGTAGAAT
* * * * * * * *
26380320 GCGCAAGCCGGGGATTGGCCC-AGTCCCCCCTGCATGCTGTCGATCATGTTGTTGTAACTCTTGA
127 GCGCAAGCCGGGGATCGGCCCGA-TCCCCCCTACATGCTGTCGATCCTGCTGCTGCAACCCTCGA
* * * *
26380384 TCCAGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGAGGATGAACTCCGTATGCC
191 TCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCC
* * * * * * *
26380449 TAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGGCCGGAGAGGTCGATCGGAGAAGCAT
256 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCCG-TCGGAGAGGCAT
* * *
26380514 AATGGGCAAGCCGAGGATCAGCCCGGTCCCTCTCTGCATGCTGCCGAT
320 AATGCGTAAGCCGAGGATCAGCCCGGT-CCTCT-T-TATGCTGCCGAT
** * * * * ***
26380562 CCCGTTGCCAGTCCCGCTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAGCTCCC
1 CGTGCTGCCGGTCCTGCAGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAGCTCCC
* * * * *
26380627 TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCCCAACCGACCGGAGAGGTAGAATGCAC
66 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGTAGAATGCGC
* * * ** * ** * * * *
26380692 AAGCCGAGGATCAGCTCGAT-CCTTCTGCATGCTGAAGATCCTGCTACCGTAACCCTCGATCCGA
131 AAGCCGGGGATCGGCCCGATCCCCCCTACATGCTGTCGATCCTGCTGCTGCAACCCTCGATCCGG
**
26380756 TCTGATCTTAGATTGGGAATGAACTTTGTATGCTTAGACTGG
196 TCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGG
26380798 TGATCCTTGT
Statistics
Matches: 777, Mismatches: 157, Indels: 50
0.79 0.16 0.05
Matches are distributed among these distances:
354 2 0.00
355 172 0.22
356 112 0.14
357 2 0.00
358 5 0.01
365 2 0.00
366 87 0.11
367 280 0.36
368 113 0.15
369 2 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (364 bp):
CGTGCTGCCGGTCCTGCAGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAGCTCCC
TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGGAGAGGTAGAATGCGC
AAGCCGGGGATCGGCCCGATCCCCCCTACATGCTGTCGATCCTGCTGCTGCAACCCTCGATCCGG
TCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCCGTCGGAGAGGCATAATGCG
TAAGCCGAGGATCAGCCCGGTCCTCTTTATGCTGCCGAT
Found at i:26382695 original size:11 final size:11
Alignment explanation
Indices: 26382681--26382705 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26382671 CTCTCCGATG
26382681 ATGCTCCGGCA
1 ATGCTCCGGCA
26382692 ATGCTCCGGCA
1 ATGCTCCGGCA
26382703 ATG
1 ATG
26382706 GTGCCCCAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (11 bp):
ATGCTCCGGCA
Found at i:26383213 original size:159 final size:155
Alignment explanation
Indices: 26382801--26383268 Score: 430
Period size: 159 Copynumber: 3.0 Consensus size: 155
26382791 GCTCCGTATG
* *
26382801 CTTAGACATGGAATGAAC-CCCTTATGCCTAAGCCAACCCACGAAACGAGCGTATGGGCGCTCAG
1 CTTAGACATGGAATGAGCTCCC-TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
** * * *
26382865 CCGACCAGAGAGGCAGAATGCGCAAGCTGGGGATC-GACCCGATCCCCCTTGCGTGCTGTCGATC
65 CCGACTGGAGAGGCAAAATACG-AAGC-GGGGATCAG-CCCGGTCCCCCTTGCGTGCTGTCGATC
* * *
26382929 CTACTGCCAAAACCCTCGGTCCGGTCCGA
127 CTGCTGCCACAACCCTCGGTCCGCTCCGA
* * * ** * *
26382958 TCTTAGAC-TGGGAATGAAG-TCCTTATGCATAAGTCAACCCATAAAACGAGCGTACGGGTGCTG
1 -CTTAGACAT-GGAATG-AGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTC
* * * * *
26383021 AGCCG-GTCGAAGAGGCATAATGAAC-AAGCCGGGGATCAGTCGGGTCCCCCTCTGCGTGCTGTC
63 AGCCGACT-GGAGAGGCAAAAT--ACGAAG-CGGGGATCAGCCCGGTCCCCCT-TGCGTGCTGTC
* **
26383084 GGTCCTGCTGCCACAACCCTCGGTCCAGCTGGGGA
123 GATCCTGCTGCCACAACCCTCGGTCC-GCT-CCGA
* * *
26383119 -TTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCCCAGC
1 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * *
26383183 CGACTGGAGAGGCAAAATACGTAAGTCGGGGATCAGCCCAGTCCCCCTTGTGTGCTGCCAATCCT
66 CGACTGGAGAGGCAAAATACG-AAG-CGGGGATCAGCCCGGTCCCCCTTGCGTGCTGTCGATCCT
*
26383248 GC-GACCGCAACCCTCGGTCCG
129 GCTG-CCACAACCCTCGGTCCG
26383269 GTCCAATCTT
Statistics
Matches: 247, Mismatches: 46, Indels: 35
0.75 0.14 0.11
Matches are distributed among these distances:
157 5 0.02
158 112 0.45
159 123 0.50
160 5 0.02
161 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.18
Consensus pattern (155 bp):
CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGACTGGAGAGGCAAAATACGAAGCGGGGATCAGCCCGGTCCCCCTTGCGTGCTGTCGATCCTGC
TGCCACAACCCTCGGTCCGCTCCGA
Found at i:26383312 original size:26 final size:26
Alignment explanation
Indices: 26383276--26383328 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26383266 CCGGTCCAAT
* *
26383276 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26383302 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26383328 C
1 C
26383329 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26383464 original size:184 final size:183
Alignment explanation
Indices: 26383130--26383585 Score: 572
Period size: 184 Copynumber: 2.5 Consensus size: 183
26383120 TAGACATGGA
* * * * * **
26383130 ATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCCCAGCCGACTGGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-TTGCGGGCGCTCAGCCGACCAGAGAGG
* * * * *
26383195 CAAAATACGTAAGTCGGGGATCAGCCCAGTCCCCCTTGTGTGCTGCCAATCCTGCGACCGCAACC
65 CAGAATGCGTAAGTCGGGGATCGGCCCAGTCCCCCCTGCGTGCTGCCAATCCTGCGACCGCAACC
* * * * * * *
26383260 CTCGGTCCGGTCCAATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGG
130 CTCGATCCGATACAATCTTAGAATAGGAATGAACTCCGTATGCTTAGACTAGGG
* *
26383314 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAAAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGT-TGCGGGCGCTCAGCCGACCAGAGAGG
** * * * * *
26383379 CAGAATGCCCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGTTG-CCGTAAC
65 CAGAATGCGTAAGTCGGGGATCGGCCCAGTCCCCCCTGCGTGCTGCCAATCCTG-CGACCGCAAC
* *
26383443 CTTCGATCCGATACGATCTTAGAATAGGAATGAACTCCGTATGCTTAGACTAGGG
129 CCTCGATCCGATACAATCTTAGAATAGGAATGAACTCCGTATGCTTAGACTAGGG
*
26383498 ATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCTTGCGGGCGCTCAGCCGACCAGAGAGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-TTGCGGGCGCTCAGCCGACCAGAGAGG
* *
26383563 CAGGATGCGTAAGCCGGGGATCG
65 CAGAATGCGTAAGTCGGGGATCG
26383586 AACGGGTGGT
Statistics
Matches: 232, Mismatches: 37, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
184 230 0.99
185 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (183 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTTGCGGGCGCTCAGCCGACCAGAGAGGC
AGAATGCGTAAGTCGGGGATCGGCCCAGTCCCCCCTGCGTGCTGCCAATCCTGCGACCGCAACCC
TCGATCCGATACAATCTTAGAATAGGAATGAACTCCGTATGCTTAGACTAGGG
Found at i:26383489 original size:26 final size:26
Alignment explanation
Indices: 26383460--26383512 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26383450 CCGATACGAT
*
26383460 CTTAGAATAGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGCATG
* *
26383486 CTTAGACTAGGGATGAACTCCGCATG
1 CTTAGAATAGGAATGAACTCCGCATG
26383512 C
1 C
26383513 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGCATG
Found at i:26384214 original size:26 final size:26
Alignment explanation
Indices: 26384185--26384237 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26384175 GGCTCAAAAT
*
26384185 CTTAGAC-TGGAAATGAGCTCCGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
26384211 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26384237 C
1 C
26384238 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26384601 original size:159 final size:158
Alignment explanation
Indices: 26384210--26384711 Score: 508
Period size: 158 Copynumber: 3.2 Consensus size: 158
26384200 AGCTCCGTAT
* *
26384210 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCCG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
26384275 CCGGTCGGAGGGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCGCCTACGTGCTGTCGATCC
66 CCGGTCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
* ** **
26384340 TGCTGCCACAACCCTTGGTCCGGTCTGA
131 CGCTGCCACAACCCTCAGTCCGAACTGA
* * * ** * * *
26384368 TCTTAGAC-TGGGATGAACTCCGTATGCATAATTCAACCCATGAAACGAGCATGCGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
26384432 CCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTG-CTGGT
66 CCGGTCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCC-CTGCGTGCTGTC-GAT
*
26384496 CCCGCTGCCACAACCCTCAGTCC-AACTGGG
129 CCCGCTGCCACAACCCTCAGTCCGAACT-GA
* * * * * **
26384526 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCAACGAAACGGGTGTGTAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * *
26384591 TCGACCGAAGAGGCAAAATGCTCAAGCCAGGGATCGGCCTGATCCCCCCTGCGTGCTATCGATCC
66 CCGGTCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
** * * * * * *
26384656 TACTGTCGCAACCCTCGGTTCGATCCGA
131 CGCTGCCACAACCCTCAGTCCGAACTGA
*
26384684 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
26384712 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 60, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 92 0.33
158 98 0.35
159 87 0.31
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGAAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCAGTCCGAACTGA
Found at i:26384714 original size:26 final size:26
Alignment explanation
Indices: 26384685--26384737 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26384675 TCGATCCGAT
26384685 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26384711 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26384737 C
1 C
26384738 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26385023 original size:355 final size:341
Alignment explanation
Indices: 26384369--26385069 Score: 805
Period size: 355 Copynumber: 2.0 Consensus size: 341
26384359 CCGGTCTGAT
* * * *
26384369 CTTAGACTGGGATGAACTCCGTATGCATAATTCAACCCATGAAACGAGCATGCGGGCGCTGAGCC
1 CTTAGACTGGGATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAACC
* * *
26384434 GGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTGCTGCTGGTCCC
66 AGCCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGCTGGTCCC
*
26384499 GCTGCCACAACCCTCAGTCCAACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAAC
131 GCTGCCACAACCCTCAGTCCAACTGGGCCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAAC
* * * * *
26384564 CAACGAAACGGGTGTGTAGGCGCTCAGTCGACCGAAGAGGCAAAATGCTCAAGCCAGGGATCGGC
196 CAACGAAACGAGCGTGCAGGCGCTCAGCCGACCGAAGAGGCAAAATGC-CAAGCCAGGGATCGAC
* * ** * * *
26384629 CTGATCCCCCCTGCGTGCTATCGATCCTACTGTCGCAACCCTCGGTTCGATCCGATCTTAGACTG
260 CTGATCCCCCCTGCATGCTACCGATCCTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTA
26384694 GGAATGAACTCCGTATG
325 GGAATGAACTCCGTATG
* ** *
26384711 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGTGCTCAAC
1 CTTAGACT-GGGATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAAC
* * * * *
26384776 TAGCCGGAGAGGCATAATGCGCAAGCCTGGGATCAGCTCGGTCCCCCTCTGCGTGCTGTCGATCC
65 CAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTG-C--T--
* * * *
26384841 CGTTGTCGATCTTGCTGCCACAACCCTCAGTCCAGCTGGGCCTTAGGCATGGAATGTA-CTCCGT
125 -G--GTC---C-CGCTGCCACAACCCTCAGTCCAACTGGGCCTTAGACATGGAATG-AGCTCCCT
* * * * *
26384905 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATATG-C
182 ATGCCTAAGCCAACCAACGAAACGAGCGTGCAGGCGCTCAGCCGACCGAAGAGGCA-AA-ATGCC
* * * * *
26384969 ATGTCAGGGATCGA-CTCGGTCCCCCTTGTATGCTACCGATCCTACTACCGCAACCCTCGATCCG
245 AAGCCAGGGATCGACCT-GATCCCCCCTGCATGCTACCGATCCTACTACCGCAACCCTCGATCCG
* * *
26385033 GTCTGATCTTAGACTAGGAATGAACTTCGTATG
309 ATCCGATCTTAGACTAGGAATGAACTCCGTATG
26385066 CTTA
1 CTTA
26385070 TGTCACACCC
Statistics
Matches: 296, Mismatches: 46, Indels: 21
0.82 0.13 0.06
Matches are distributed among these distances:
342 8 0.03
343 98 0.33
344 1 0.00
346 1 0.00
349 1 0.00
351 3 0.01
354 3 0.01
355 175 0.59
356 3 0.01
357 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (341 bp):
CTTAGACTGGGATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAACC
AGCCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCGTGCTGCTGGTCCC
GCTGCCACAACCCTCAGTCCAACTGGGCCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAAC
CAACGAAACGAGCGTGCAGGCGCTCAGCCGACCGAAGAGGCAAAATGCCAAGCCAGGGATCGACC
TGATCCCCCCTGCATGCTACCGATCCTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTAG
GAATGAACTCCGTATG
Found at i:26392164 original size:26 final size:26
Alignment explanation
Indices: 26392135--26392187 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26392125 CTAGTCTGAT
26392135 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
26392161 CTTAGACTGGGGATGTACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
26392187 C
1 C
26392188 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:26392538 original size:26 final size:26
Alignment explanation
Indices: 26392502--26392554 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26392492 CTGGTCCAAT
*
26392502 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
26392528 CTTAGACTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
26392554 C
1 C
26392555 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:26392673 original size:367 final size:364
Alignment explanation
Indices: 26391949--26392971 Score: 1214
Period size: 367 Copynumber: 2.8 Consensus size: 364
26391939 TGCCAGTCCC
* *
26391949 GCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAA
1 GCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAA
* * * * * *
26392013 CTCATGAAACGGGCGTGCGAGCA-CTCAGCTGGCTGGAGAGGCAGAATGCACAAGCTGGGGATTG
65 CCCACGAAACGAGCGTGCG-GGAGCTCAGCCGGC-GGAGAGGCAGAATGCACAAGCTGGGGA-TA
* * * * *
26392077 GCCCGGTCCCCGCTGCGTGCTGCCAATCCTGC-AGCCGTAACCCTCGGTCTAGTCTGATCTTAGA
127 GCCCGGTCCCC-CTGCGTGTTGCCGATCCTGCTA-CCGTAACCCTCGATCTGGTCCGATCTTAGA
* * *
26392141 CTGGGAATGAACTCTGTATGCTTAGACTGGGGATGTACTCTGTATGCCTATGTCAACCCATGAAA
190 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTC-GTATGCCTAAGTCAACCCATGAAA
* * * ** * * * * * * * *
26392206 CGACCGTGCGGGCACTCAACCGACCAAAAATGTTGGCCGAAGAGGCATAATGCGCAAGCTGGAGA
254 AGAACGTGCGGGCGCTCAGTCGACCAGAGAGGTCGACCGAAGAGGCAAAATGCACAAGCCGGAGA
* * * **
26392271 TCAGCCCGGTCCCCCTTTGCATGCTACCAATCCCGCTGTCGATGTT
319 CCAGCCCGGTCCCCCTCTGCATGCTACCAATCCCGCTGCCGATCCT
* * *
26392317 GCTGCCAAAACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGTACT-CGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
* * * * *
26392381 CCACAAAACGAGCATACGGGAGCTCAGCCAGCAGGAGAGGCAGAATGCGCAAGCTGGGGATCAGC
66 CCACGAAACGAGCGTGCGGGAGCTCAGCCGGC-GGAGAGGCAGAATGCACAAGCTGGGGAT-AGC
* * *
26392446 CCGATCCCTCCTGCGTGTTGCCGATCCTGCTACCGCAACCCTCGATCTGGTCCAATCTTAGACTG
129 CCGGTCCC-CCTGCGTGTTGCCGATCCTGCTACCGTAACCCTCGATCTGGTCCGATCTTAGACTG
26392511 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTACGTATGCCTAAGTCAACCCATGAAAAGA
193 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACT-CGTATGCCTAAGTCAACCCATGAAAAGA
* * * *
26392576 GCGTGCGGGCGCTCAGTCGACCAGAGAGGTCGACCGGAGAGGCAAAATGCATAAGCCGGGGACCA
257 ACGTGCGGGCGCTCAGTCGACCAGAGAGGTCGACCGAAGAGGCAAAATGCACAAGCCGGAGACCA
** ** * *
26392641 GCCCGGTCCCCCTCTGTGTGCTGTCGATCCCGCTGCCGCTCCT
322 GCCCGGTCCCCCTCTGCATGCTACCAATCCCGCTGCCGATCCT
* * * *
26392684 GCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACGTGAAATGTACTCCGTATGCTTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
* * *
26392749 CCACGAAACGAACGTGC-GGACGCTCAGTCGGTCGGAGAGGCAAAATGCACAAGCT-GGGATAGG
66 CCACGAAACGAGCGTGCGGGA-GCTCAGCCGG-CGGAGAGGCAGAATGCACAAGCTGGGGATA-G
* ** *
26392812 CCCGGTCCGCCCTGCGTGTTGCCGATCCTACTGTCGTAACCCTCGATCTGGTTCGATCTTAGACT
128 CCCGGTCC-CCCTGCGTGTTGCCGATCCTGCTACCGTAACCCTCGATCTGGTCCGATCTTAGACT
* * * *
26392877 AGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCA-CAAAAC
192 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT-CGTATGCCTAAGTCAACCCATGAAAA-
26392941 GAACGTGCGGGCGCTCAGTCGACCAGAGAGG
255 GAACGTGCGGGCGCTCAGTCGACCAGAGAGG
26392972 CAGGATGCGC
Statistics
Matches: 560, Mismatches: 83, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
366 8 0.01
367 448 0.80
368 102 0.18
369 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (364 bp):
GCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGAGCTCAGCCGGCGGAGAGGCAGAATGCACAAGCTGGGGATAGCCC
GGTCCCCCTGCGTGTTGCCGATCCTGCTACCGTAACCCTCGATCTGGTCCGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACTGGGGATGAACTCGTATGCCTAAGTCAACCCATGAAAAGAACGT
GCGGGCGCTCAGTCGACCAGAGAGGTCGACCGAAGAGGCAAAATGCACAAGCCGGAGACCAGCCC
GGTCCCCCTCTGCATGCTACCAATCCCGCTGCCGATCCT
Found at i:26392898 original size:26 final size:26
Alignment explanation
Indices: 26392869--26392921 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26392859 CTGGTTCGAT
*
26392869 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
26392895 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26392921 C
1 C
26392922 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26393805 original size:26 final size:26
Alignment explanation
Indices: 26393776--26393827 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26393766 CTGGTCCAAT
*
26393776 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
26393802 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
26393828 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:26394180 original size:26 final size:26
Alignment explanation
Indices: 26394144--26394196 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26394134 CCAGTCCGAT
*
26394144 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26394170 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26394196 C
1 C
26394197 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26395407 original size:26 final size:26
Alignment explanation
Indices: 26395366--26395421 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
26395356 CTGATCTGAT
*
26395366 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26395392 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
26395418 CTTA
1 CTTA
26395422 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26395687 original size:344 final size:342
Alignment explanation
Indices: 26395049--26396154 Score: 1272
Period size: 344 Copynumber: 3.2 Consensus size: 342
26395039 TTGGTCTGAT
* ** * * *
26395049 CTTAGATTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTACGGGCGCTGAGC
1 CTTAGACTGGG-ATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* * * * * * **
26395114 CAGTCGAAGAGGCATAATGCACAAGTCGGGGATCAGTCCGGT-CCCCCTCTACGTGCTGCCAATC
65 CAGCCGGAGAGGCATAATGCACAAGCCGAGGATCAGACCGGTCCCCCCTCTACGTGCTGTCGGTC
*
26395178 CCGCTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTGAGCCA
130 CCGCTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAGCTCCTTATGCCTGAGCCA
* * *
26395243 ACCCACGAAACGGGCATGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGTAAGCCGGTGATCG
195 ACCCACGAAAC-GACGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGCCGGTGATCG
* * * * *
26395308 GCCCGATCCTTCCTACGTGCTGCCGATCCTGCTGGCACAACCCTTGGTCTGATCTGATCTTAGAC
259 GCCCGATCCTCCCTACGTGCTGTCGATCCTGCTGGCACAACCCTCGATCTGGTCTGATCTTAGAC
*
26395373 TGGGAATGAACTCCGTATG
324 TGGGAATGAACTTCGTATG
*
26395392 CTTAGACTAGGGATGAACTCCATATGCTTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACT-GGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* * * *
26395457 CAACCGGAGAGACAGAATGCACAAGCCGAGGATC-GAACCGGTCCCCCCTCTACGTTCTGTCGGT
65 CAGCCGGAGAGGCATAATGCACAAGCCGAGGATCAG-ACCGGTCCCCCCTCTACGTGCTGTCGGT
* * *
26395521 CCCGCTACCACAACCCTCAGTCCGACTTGGGCTTAGACATGGAATGAGCTCCTTATGCCTGAGCC
129 CCCGCTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAGCTCCTTATGCCTGAGCC
* * *
26395586 AACCCACGAAACAGACGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAATGCCCAAGTCGGTGATC
194 AACCCACGAAAC-GACGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGCCGGTGATC
* * *
26395651 GGCCCGATCCTCCCTACGTGCTGTTGATCCTGCTGGCACAACCCTCGATCCGGTCCGATCTTAGA
258 GGCCCGATCCTCCCTACGTGCTGTCGATCCTGCTGGCACAACCCTCGATCTGGTCTGATCTTAGA
26395716 CTGGGAATGAACTTCGTATG
323 CTGGGAATGAACTTCGTATG
* * * * * * *
26395736 CTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCATGCGGGCGTTCAGC
1 CTTAGACT-GGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* * * * *
26395801 CGGCCCGAGAGGCATAATGCACAAGCTGAGGATCAGCCCGATCCCCTCTGCATGCTACCGATCCC
65 CAGCCGGAGAGGCATAATGCACAAGCCGAGGATCAGACCGGTCCCC-C--C-T-CTA-CG-T---
* * * * * *
26395866 GCTATCGGTCCTGCTGCCACAACCATCGGTCCGGCTGGGGCTTAGACATCGAATGTA-CT-CTGT
120 GCTGTCGGTCCCGCTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATG-AGCTCCT-T
* * **** * *
26395929 ATGCCTAAGCCAACCCATGAAACGAGCGTGCATATGCTCACTCGACCGGAGAGGTAGAATGCGCA
183 ATGCCTGAGCCAACCCACGAAACGA-CGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGCA
* * * ** * ** *
26395994 AGCCAGG-GATCAGCCTGAACC-CCCGGCGTGTTGTCGATCCTGCTATCGCAACCCTCGAT-TCG
247 AGCC-GGTGATCGGCCCGATCCTCCCTACGTGCTGTCGATCCTGCTGGCACAACCCTCGATCT-G
*
26396056 GTCTGATCTTAGACTGAGAATGAACTTCGTATG
310 GTCTGATCTTAGACTGGGAATGAACTTCGTATG
* * *
26396089 CTTAGACTGTGGATGAACTCTATATGCCTATGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTG-GGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGC
26396154 C
65 C
26396155 CGGTCTTCCT
Statistics
Matches: 647, Mismatches: 96, Indels: 30
0.84 0.12 0.04
Matches are distributed among these distances:
342 1 0.00
343 87 0.13
344 307 0.47
345 2 0.00
347 1 0.00
348 1 0.00
349 3 0.00
350 2 0.00
351 1 0.00
352 1 0.00
353 123 0.19
354 115 0.18
355 3 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (342 bp):
CTTAGACTGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCC
AGCCGGAGAGGCATAATGCACAAGCCGAGGATCAGACCGGTCCCCCCTCTACGTGCTGTCGGTCC
CGCTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAGCTCCTTATGCCTGAGCCAA
CCCACGAAACGACGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGCCGGTGATCGGC
CCGATCCTCCCTACGTGCTGTCGATCCTGCTGGCACAACCCTCGATCTGGTCTGATCTTAGACTG
GGAATGAACTTCGTATG
Found at i:26395746 original size:26 final size:26
Alignment explanation
Indices: 26395710--26395762 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26395700 CCGGTCCGAT
* *
26395710 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
26395736 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
26395762 C
1 C
26395763 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:26396114 original size:26 final size:26
Alignment explanation
Indices: 26396063--26396115 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26396053 TCGGTCTGAT
*
26396063 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCATATG
* *
26396089 CTTAGACTGTGGATGAAC-TCTATATG
1 CTTAGACTGAGAATGAACTTC-ATATG
26396115 C
1 C
26396116 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCATATG
Found at i:26396435 original size:318 final size:317
Alignment explanation
Indices: 26395859--26396459 Score: 751
Period size: 317 Copynumber: 1.9 Consensus size: 317
26395849 TGCATGCTAC
* * * *
26395859 CGATCCCGCTATCGGTCCTGCTGCCACAACCATCGGTCCGGCTGGGGCTTAGACATCGAATGTAC
1 CGATCCCACTATCGATCCTGCTGCCACAACCATCGATCCGACTGGGGCTTAGACATCGAATGTAC
* * * * *
26395924 TCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCATATGCTCACTCGACCGGAGAGGTAGAAT
66 TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGATGCTCACTCGACCGAAGAGGCAGAAT
* * * * * * *
26395989 GCGCAAGCCAGGGATCAGCCTGAACCCCCGGCGTGTTGTCGATCCTGCTATCGCAACCCTCGATT
131 ACGCAAGCCAGGGATCAGCCCGAACCCCCGGCGTGGTATCGATCCTGCTACCGCAACCCTCAATC
* * *
26396054 CGGTCTGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGTGGATGAACTCTATATGCCTA
196 CGGTCTGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTATATGCCTA
* * *
26396119 TGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCCGGTCTTCCTCTACGTGCTGT
261 AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCCGGTCTTCCTCTACGTGCTGT
* * * * * *
26396176 CGATCCCACTGTCGATCCTGCTGTCACAACCCTCGATCTGACTGGGGCTTAGACGTGGAATGTAC
1 CGATCCCACTATCGATCCTGCTGCCACAACCATCGATCCGACTGGGGCTTAGACATCGAATGTAC
* ** * * * *
26396241 TCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGTGGGTGTTCAGC-C-AGTCGAAGATGCAGA
66 TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGATGCTCA-CTCGA-CCGAAGAGGCAGA
* * * *
26396304 ATACGCAAGTC-GTGGATCGGCCCGATCCCTCCTGG-GTGGTATCGATCCTGCTGCCGCAACCCT
129 ATACGCAAGCCAG-GGATCAGCCCGAACCC-CC-GGCGTGGTATCGATCCTGCTACCGCAACCCT
* *
26396367 CAATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTAT
191 CAATCCGGTCTGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTATAT
*
26396432 GCCTAAGCCAACCCATGAAACGAGCGTG
256 GCCTAAGCCAACCCACGAAACGAGCGTG
26396460 TAGGCATTTA
Statistics
Matches: 237, Mismatches: 42, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
316 2 0.01
317 124 0.52
318 109 0.46
319 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (317 bp):
CGATCCCACTATCGATCCTGCTGCCACAACCATCGATCCGACTGGGGCTTAGACATCGAATGTAC
TCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGATGCTCACTCGACCGAAGAGGCAGAAT
ACGCAAGCCAGGGATCAGCCCGAACCCCCGGCGTGGTATCGATCCTGCTACCGCAACCCTCAATC
CGGTCTGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTATATGCCTA
AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCCGGTCTTCCTCTACGTGCTGT
Found at i:26396920 original size:28 final size:26
Alignment explanation
Indices: 26396882--26396936 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 26
26396872 CCGGTCCGAT
26396882 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26396908 CTTACGACTTGGGGATGAACTCCGTATG
1 CTTA-GAC-TGGGAATGAACTCCATATG
26396936 C
1 C
26396937 CCCCTAAAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.16
27 3 0.12
28 18 0.72
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26397293 original size:26 final size:26
Alignment explanation
Indices: 26397257--26397309 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26397247 CCGGTTCAAT
* *
26397257 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26397283 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26397309 C
1 C
26397310 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26398378 original size:159 final size:158
Alignment explanation
Indices: 26398005--26398412 Score: 387
Period size: 159 Copynumber: 2.6 Consensus size: 158
26397995 AGCTCCGTAT
* *
26398005 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAA
* * *
26398070 CCAGCTAGAGAGGCAAAATACGCAAGCCAGGGATCGACCTGATCCCCCCTACGTGCTGTCGATCC
66 CCACCGAGAGAGGCAAAATACGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
** *
26398135 TACTGCTGCAACCCTCAGTCTGGTCCAA
131 TACTGCCACAACCCTCAGTCTGCTCCAA
* * * * * * * *
26398163 TCTTAGAC-TGGGAATGAACTTCGTATGCATAAGTTAGCCCATGAAACGAGCATGCAGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCA
* ** * * *
26398227 GCCGACCGA-AGAGGCGTAATACGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTG-CTG
65 ACC-ACCGAGAGAGGCAAAATACGCAAGCCAGGGATCGACCCGATCCCCC-CTACGTGCTGTC-G
* * * *
26398290 GTCCTGCTGCCACAACCCTC-GATCTAGCT-GAG
127 ATCCTACTGCCACAACCCTCAG-TCT-GCTCCAA
* * * * * * *
26398322 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAA
* * *
26398387 CCGGCCG-GAGAGGCAGAATGCGCAAG
66 CC-ACCGAGAGAGGCAAAATACGCAAG
26398413 TTGGGGATTG
Statistics
Matches: 198, Mismatches: 44, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.01
158 91 0.46
159 103 0.52
160 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAA
CCACCGAGAGAGGCAAAATACGCAAGCCAGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
TACTGCCACAACCCTCAGTCTGCTCCAA
Found at i:26399974 original size:159 final size:159
Alignment explanation
Indices: 26399580--26400047 Score: 476
Period size: 158 Copynumber: 2.9 Consensus size: 159
26399570 AGCTCCATAT
* * *
26399580 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACTCAG
* * *
26399645 CCGATCGGAGAGGCAGAACGTGCAAGCCGAGGATCGACCCGGTCCCCCCTACATGCTGTCGATCC
66 CCGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACATGCTGTCGATCC
* * * *
26399710 TGCTGCCACAACCCTCGGTCCAGTCTGAT
131 CGCTACCACAACCCTCGGTCCAGGCTGAG
* ** * *
26399739 G-TTAGAC-TGGGAATGAACTCCGTATGCATAAGTTAA-CCACCGAAAAAAGCGTGCGGGCACTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-CGAAAAGAGCGTGCGGGCACTC
* * * * *** *
26399801 AGCCGATCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTTTGTGTGCTGTCGG
64 AGCCGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCC-CTACATGCTGTCGA
* * *
26399866 TCCCGCTACCACAACCCTCGTTTC-GGCTGGG
128 TCCCGCTACCACAACCCTCGGTCCAGGCTGAG
* * * * * * ** *
26399897 GCTTAGACATGGAATGAGCTCCGTATACCTAAGCCAACCCAGGAAATGGGCGTGCGAGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACTCAG
* * * * * * *
26399962 CCGACCGGAGAGGCAAAATACGCAAGTCGGGGATCGCCCCGGTCCCCCCTGCATGCTGTCGATCT
66 CCGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACATGCTGTCGATCC
* **
26400027 TGCTGTCACAACCCTCGGTCC
131 CGCTACCACAACCCTCGGTCC
26400048 GATCCGATCT
Statistics
Matches: 246, Mismatches: 57, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
157 4 0.02
158 125 0.51
159 113 0.46
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACTCAG
CCGATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACATGCTGTCGATCC
CGCTACCACAACCCTCGGTCCAGGCTGAG
Found at i:26400363 original size:159 final size:158
Alignment explanation
Indices: 26400082--26400389 Score: 359
Period size: 159 Copynumber: 1.9 Consensus size: 158
26400072 ACTCTGTATG
* * * * * *
26400082 CTTAGACTGGAGTTGAACTCCGTATGCGTAAGTCAACCCACAAAACGAGCGTGCGGGCTCTCAGT
1 CTTAGACTGGAGATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCATACGGGCGCTCAGC
* * * * * **
26400147 CGGTCGGAGAGGCATAATGCGTAAGCCAGGGATCGACCCGGTCCCCCCTTGCATGCTGTCGATCC
66 CAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCAGTG-ATGCTGTCGATCC
* *
26400212 TACTGCCGCAACCCTCGGTCCGGTCTGAT
130 CACTGCCACAACCCTCGGTCCGGTCTGAT
* * *
26400241 CTTAGACTGG-GAATGAACTTCGTATGCATAAGTCAACCCACAAAATGAGCATACGGGCGCTGAG
1 CTTAGACTGGAG-ATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCATACGGGCGCTCAG
* * * *
26400305 CCAGCCGAAGAGGCATAATGTGCAAGCCAGGGATTGGCCCGATCCACCTCAGTG-TGCTGTCGGT
65 CCAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCC-CC-CAGTGATGCTGTCGAT
*
26400369 CCCGCTGCCACAACCCTCGGT
128 CCCACTGCCACAACCCTCGGT
26400390 TCGAGTGGGG
Statistics
Matches: 123, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
158 1 0.01
159 117 0.95
160 2 0.02
161 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGAGATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCATACGGGCGCTCAGC
CAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCAGTGATGCTGTCGATCCC
ACTGCCACAACCCTCGGTCCGGTCTGAT
Found at i:26400404 original size:159 final size:157
Alignment explanation
Indices: 26400081--26400426 Score: 354
Period size: 159 Copynumber: 2.2 Consensus size: 157
26400071 GACTCTGTAT
* * * * *
26400081 GCTTAGACTGGAGTTGAACTCCGTATGCGTAAGTCAACCCACAAAACGAGCGTGCGGGCTCTCAG
1 GCTTAGACTGGA-ATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCATACGGGCGCTCAG
* * * * * * **
26400146 TCGGTCGGAGAGGCATAATGCGTAAGCCAGGGATCGACCCGGTCCCCCCTTGCATGCTGTCGATC
65 CCAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCAGTG-ATGCTGTCGATC
* * *
26400211 CTACTGCCGCAACCCTCGGTCCGGTCTGA
129 CCACTGCCACAACCCTCGGTCCGGTCGGA
* * * *
26400240 TCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACAAAATGAGCATACGGGCGCTGAG
1 GCTTAGACT-GGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCATACGGGCGCTCAG
* * * *
26400305 CCAGCCGAAGAGGCATAATGTGCAAGCCAGGGATTGGCCCGATCCACCTCAGTG-TGCTGTCGGT
65 CCAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCC-CC-CAGTGATGCTGTCGAT
* * *
26400369 CCCGCTGCCACAACCCTCGGTTCGAGT-GGG
128 CCCACTGCCACAACCCTCGGTCCG-GTCGGA
* *
26400399 GCTTAGACATGGAATGAGCTCCCTATGC
1 GCTTAGAC-TGGAATGAACTCCGTATGC
26400427 TTAGACTAGG
Statistics
Matches: 151, Mismatches: 31, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
159 140 0.93
160 8 0.05
161 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCATAAGTCAACCCACAAAACGAGCATACGGGCGCTCAGC
CAGCCGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCAGTGATGCTGTCGATCCC
ACTGCCACAACCCTCGGTCCGGTCGGA
Found at i:26400441 original size:26 final size:26
Alignment explanation
Indices: 26400399--26400452 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
26400389 TTCGAGTGGG
*
26400399 GCTTAGACATGGAATGAGCTCCCTAT
1 GCTTAGACATGGAATGAACTCCCTAT
* *
26400425 GCTTAGAC-TAGGGATGAACTCCGTAT
1 GCTTAGACAT-GGAATGAACTCCCTAT
26400451 GC
1 GC
26400453 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (26 bp):
GCTTAGACATGGAATGAACTCCCTAT
Found at i:26400795 original size:26 final size:26
Alignment explanation
Indices: 26400766--26400818 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26400756 CCGGTTCGAT
26400766 CTTAGACT-GAGAATGAACTCCGTATG
1 CTTAGACTAG-GAATGAACTCCGTATG
*
26400792 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26400818 C
1 C
26400819 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26402417 original size:26 final size:26
Alignment explanation
Indices: 26402368--26402418 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26402358 GGTCTGATCC
*
26402368 TAGACTGGGAATGAACTCTATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
* *
26402394 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
26402419 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:26403117 original size:26 final size:26
Alignment explanation
Indices: 26403088--26403140 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26403078 GGCTCAAAAT
* *
26403088 CTTAGAC-TGGGAGTGAGCTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
26403114 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
26403140 C
1 C
26403141 CTTATCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:26403619 original size:26 final size:26
Alignment explanation
Indices: 26403589--26403641 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26403579 TCCGTCCGAT
26403589 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26403615 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26403641 C
1 C
26403642 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26403804 original size:182 final size:183
Alignment explanation
Indices: 26403449--26403895 Score: 533
Period size: 182 Copynumber: 2.4 Consensus size: 183
26403439 ATGGAATAAG
* * * * * * *
26403449 CTCCCTATGCGTAAGCCAACCCATGAAACGGGCGTGCGAGCGCTCAGCCGATCGAAGATGCAGAA
1 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAA
** * * * * *
26403514 TGCGTAAGTCGGGGATCGGTCCGATCGCCCCTACGTGCTGCCGATCCTGCTATCGGAACCCTCGA
66 TGCACAAGCCGGGGATCAGTCCAATCGCCCCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGA
* * *
26403579 TCCGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAA
131 TCCGTCCGATCTTAGACTGGGAATGAACTCCATAAGATTAGACTGGGGATGAA
* *
26403632 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CGAGCCGGAGAGGTAG-
1 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGA-CCGAAGAGGCAGA
* *
26403695 ATGCACAAGCCGGGGATCAG-CCAATC-CCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTT
65 ATGCACAAGCCGGGGATCAGTCCAATCGCCC-CTACGTGCTGCCGATCCTGCTACCGCAACCCTC
* * *
26403758 GATTCGGTTCGATCTTAGATTGGGAATGAACTCCATAAGATTAGACTGGGGATGAA
129 GA-TCCGTCCGATCTTAGACTGGGAATGAACTCCATAAGATTAGACTGGGGATGAA
* * * * * * * *
26403814 CTCTGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGTGCTTAGTCGACCAAAGAGGCAGGA
1 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAA
* *
26403879 TGCATAAGTCGGGGATC
66 TGCACAAGCCGGGGATC
26403896 GAACGGGTGG
Statistics
Matches: 225, Mismatches: 34, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
180 3 0.01
181 36 0.16
182 117 0.52
183 69 0.31
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.20
Consensus pattern (183 bp):
CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAA
TGCACAAGCCGGGGATCAGTCCAATCGCCCCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGA
TCCGTCCGATCTTAGACTGGGAATGAACTCCATAAGATTAGACTGGGGATGAA
Found at i:26404284 original size:159 final size:158
Alignment explanation
Indices: 26404029--26404385 Score: 360
Period size: 159 Copynumber: 2.3 Consensus size: 158
26404019 CTGTTGCCGT
* *
26404029 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGACAACCCACGAAA
1 AACCCTCGGTCCGGTCTGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGACAACCCACGAAA
* * * * * * *
26404094 CGAGCGTGTGGGCGCTGAGCCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCAACCCGATCCC
66 CGAGCGTGCGGGCGCTCAACCGACCGAAGAGGCAGAATGAGCAAGCCGAGAATCAACCCGATCCC
26404159 CCTCTGCATGCTGCCGATCTCGCTGCCAC
131 CC-CTGCATGCTGCCGATCTCGCTGCCAC
* * * * *
26404188 AACCCTCGGTCCGG-CTTGGGCTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACGCACGA
1 AACCCTCGGTCCGGTC-TGAGCTTAGAC-TGGGAATGAACTCCCTATGCATAAGACAACCCACGA
* * * * * * * *
26404251 AATGGGCGTGCGGGCGCTCAATCGATCGGAGAGGTAGAATGAGCAAGCCGAGAATCAGCCCGGTC
64 AACGAGCGTGCGGGCGCTCAACCGACCGAAGAGGCAGAATGAGCAAGCCGAGAATCAACCCGATC
* ** ** *
26404316 CCCCCTGCGTGCTGTAGATC-CTGCTATCGC
129 CCCCCTGCATGCTGCCGATCTC-GCTGCCAC
** * * *
26404346 AACTTTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTC
1 AACCCTCGGTCCGGTCTGAGCTTAGACTGGGAATGAACTC
26404386 TGTATGCTTA
Statistics
Matches: 158, Mismatches: 35, Indels: 11
0.77 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 48 0.30
159 107 0.68
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
AACCCTCGGTCCGGTCTGAGCTTAGACTGGGAATGAACTCCCTATGCATAAGACAACCCACGAAA
CGAGCGTGCGGGCGCTCAACCGACCGAAGAGGCAGAATGAGCAAGCCGAGAATCAACCCGATCCC
CCCTGCATGCTGCCGATCTCGCTGCCAC
Found at i:26404395 original size:26 final size:26
Alignment explanation
Indices: 26404366--26404417 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
26404356 CTGGTCTGAT
*
26404366 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26404392 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26404418 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26404802 original size:13 final size:13
Alignment explanation
Indices: 26404784--26404811 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26404774 CGGGTGCTCA
26404784 GCCAGCCGGAGAG
1 GCCAGCCGGAGAG
26404797 GCCAGCCGGAGAG
1 GCCAGCCGGAGAG
26404810 GC
1 GC
26404812 ATAATGCGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.32, G:0.46, T:0.00
Consensus pattern (13 bp):
GCCAGCCGGAGAG
Found at i:26404954 original size:342 final size:329
Alignment explanation
Indices: 26404392--26405003 Score: 837
Period size: 342 Copynumber: 1.8 Consensus size: 329
26404382 ACTCTGTATG
* *
26404392 CTTAGACTGGGGATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCGTCCGGGTGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTCCGGGTGCTCAAC
* * * * * *
26404457 CGACAGGAGAGGCATAATGCATAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCT
66 CGACAGGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTGCCGAGCC
** * * *
26404522 GGCTGCTGGTCCTGCTGCCATAACCCTCGGTCCGACTGGGGAATAGACATGGAATGTACTCCGTA
131 CACTGCCGGTCCTACTGCCACAACCCTCGGTCCGACTGGGGAATAGACATGGAATGTACTCCGTA
* *
26404587 TGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAA
196 TGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAAATGCGCAA
*
26404652 GTCGGGGATCAGCCCGATCCCCCCTGCATGCTACCGATCCTACTGTCGCAACCCTCGATCTGGTC
261 GCCGGGGATCAGCCCGATCCCCCCTGCATGCTACCGATCCTACTGTCGCAACCCTCGATCTGGTC
26404717 CAAT
326 CAAT
* * *
26404721 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTGAACCCACAAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTCCGGGTGCTCA--
* **
26404786 CAGCCGGAGAGGCCAGCCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCTTGGTCCCCCTCTGC
64 -A-CC---GA---CA---GGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGC
* * * ** *
26404851 ATGCTGTCGAGCCCACTGCCGGTCCTACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGG
118 ATGCTGCCGAGCCCACTGCCGGTCCTACTGCCACAACCCTCGGTCCGACTGGGGAATAGACATGG
* *
26404916 AATGTACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAG
183 AATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAG
26404981 GCAAAATGCGCAAGCCGGGGATC
248 GCAAAATGCGCAAGCCGGGGATC
26405004 GATCTGGTCC
Statistics
Matches: 240, Mismatches: 30, Indels: 13
0.85 0.11 0.05
Matches are distributed among these distances:
329 58 0.24
332 1 0.00
333 2 0.01
336 2 0.01
339 2 0.01
342 175 0.73
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.18
Consensus pattern (329 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTCCGGGTGCTCAAC
CGACAGGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTGCCGAGCC
CACTGCCGGTCCTACTGCCACAACCCTCGGTCCGACTGGGGAATAGACATGGAATGTACTCCGTA
TGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAAATGCGCAA
GCCGGGGATCAGCCCGATCCCCCCTGCATGCTACCGATCCTACTGTCGCAACCCTCGATCTGGTC
CAAT
Found at i:26405067 original size:342 final size:329
Alignment explanation
Indices: 26404392--26405073 Score: 819
Period size: 342 Copynumber: 2.0 Consensus size: 329
26404382 ACTCTGTATG
* *
26404392 CTTAGACTGGGGATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCGTCCGGGTGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTCCGGGTGCTCAAC
* * * * * *
26404457 CGACAGGAGAGGCATAATGCATAAGCTGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGATCT
66 CGACAGGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTGCCGAGCC
** * * *
26404522 GGCTGCTGGTCCTGCTGCCATAACCCTCGGTCCGACTGGGGAATAGACATGGAATGTACTCCGTA
131 CACTGCCGGTCCTACTGCCACAACCCTCGGTCCGACTGGGGAATAGACATGGAATGTACTCCGTA
* *
26404587 TGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAA
196 TGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAAATGCGCAA
* * ** *
26404652 GTCGGGGATCAGCCCGATCCCCCCTGCATGCTACCGATCCTACTGTCGCAACCCTCGATCTGGTC
261 GCCGGGGATCAGCCCGATCCCCCCTGCATACTACCGATCCTACTACCGCAACCCTCGATCTAGTC
26404717 CAAT
326 CAAT
* * *
26404721 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTGAACCCACAAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTCCGGGTGCTCA--
* **
26404786 CAGCCGGAGAGGCCAGCCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCTTGGTCCCCCTCTGC
64 -A-CC---GA---CA---GGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGC
* * * ** *
26404851 ATGCTGTCGAGCCCACTGCCGGTCCTACTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGG
118 ATGCTGCCGAGCCCACTGCCGGTCCTACTGCCACAACCCTCGGTCCGACTGGGGAATAGACATGG
* *
26404916 AATGTACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAG
183 AATGTACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAG
* * * * * *
26404981 GCAAAATGCGCAAGCCGGGGATC-GATCTGGTCCCTCCC-GCGTACTGCCGATCCTGCTACCGCA
248 GCAAAATGCGCAAGCCGGGGATCAG-CCCGATCCC-CCCTGCATACTACCGATCCTACTACCGCA
* * * *
26405044 TCCCTTGGTCTAGTCCGAT
311 ACCCTCGATCTAGTCCAAT
26405063 CTTAGACTGGG
1 CTTAGACTGGG
26405074 AATGTCCCCA
Statistics
Matches: 293, Mismatches: 45, Indels: 17
0.83 0.13 0.05
Matches are distributed among these distances:
329 58 0.20
332 1 0.00
333 2 0.01
336 2 0.01
339 2 0.01
341 1 0.00
342 224 0.76
343 3 0.01
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (329 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTCCGGGTGCTCAAC
CGACAGGAGAGGCATAATGCACAAGCCGAGGATCAGCCCGGTCCCCCTCTGCATGCTGCCGAGCC
CACTGCCGGTCCTACTGCCACAACCCTCGGTCCGACTGGGGAATAGACATGGAATGTACTCCGTA
TGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAAAATGCGCAA
GCCGGGGATCAGCCCGATCCCCCCTGCATACTACCGATCCTACTACCGCAACCCTCGATCTAGTC
CAAT
Found at i:26406000 original size:26 final size:26
Alignment explanation
Indices: 26405971--26406052 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
26405961 GTCTGGTCCG
*
26405971 ATGCTTAGACTGGGAATGAATTCTGT
1 ATGCTTAGACTGGGAATGAACTCTGT
*
26405997 ATGCTTAGACTGGGAATGAACTCCGT
1 ATGCTTAGACTGGGAATGAACTCTGT
* *
26406023 ATGCTTAGACTGGGGATGAACTCTAT
1 ATGCTTAGACTGGGAATGAACTCTGT
26406049 ATGC
1 ATGC
26406053 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (26 bp):
ATGCTTAGACTGGGAATGAACTCTGT
Found at i:26407478 original size:159 final size:159
Alignment explanation
Indices: 26407120--26407554 Score: 495
Period size: 159 Copynumber: 2.8 Consensus size: 159
26407110 CCGTATGCTT
* * * *
26407120 AGACATGGAATGAATTCCGTAGGCCTAAGCCAACCAATGAAACGAACGTGCGGGCGCTCAGCCGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * *
26407185 TCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACTCGGTCCCCCTAT--GTGCTGTCAATCCTAC
66 TCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCAATCCCAC
** * * *
26407248 TGCTGCAACCCTTGGTCCGGTCTGATCTT
131 TGCCACAACCCTCGGTCCGGTCTGAGCTC
* * * * * *
26407277 AGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCGCTAAGTCG
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * ** *
26407341 GTCGAAGAGGCATAATGCACAAGTCGGGGTTCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCG
65 GTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCAATCCCA
*
26407406 CTGCCACAACCCTCGGTCCGG-CTGGGGCTC
130 CTGCCACAACCCTCGGTCCGGTCT-GAGCTC
* * *
26407436 AGACATGGAATGAGCTCCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGA
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGG
* * *
26407501 CCGGAGAGGTAGAATGCGCAAG-CTGGGGATCGGCTCGATCCCCC-CTGCATGCTG
66 TCGGAGAGGCAGAATGCGCAAGTC-GGGGATCGGCTCGATCCCCCTCTGCGTGCTG
26407555 CTGATTCTGC
Statistics
Matches: 227, Mismatches: 45, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
156 1 0.00
157 92 0.41
158 12 0.05
159 121 0.53
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.18
Consensus pattern (159 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGG
TCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGATCCCCCTCTGCGTGCTGTCAATCCCAC
TGCCACAACCCTCGGTCCGGTCTGAGCTC
Found at i:26415221 original size:159 final size:160
Alignment explanation
Indices: 26414633--26415444 Score: 669
Period size: 159 Copynumber: 5.1 Consensus size: 160
26414623 GCTCCGTATG
* * *
26414633 CTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCACGAAACGAGCGTGCAGGCGCTAAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
* * * * * ** * *
26414698 TGGCCGGAGAGGCAAAATGCACAAACCGGGGATCGATCCGGTCCCCC-CTGCATGCTGTCGATCT
66 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
* * *
26414762 TGCTGCCGCAACCCCCGATCCGGTCT-GAT
131 TGCTGCCACAACCCTCGATCCGATCTAGAT
* * * * * * * *
26414791 CTTCGAC-TGGGAATGATCTCCGTATGCATAAGTCAACCCAGGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* ** * * * * * * *
26414855 CCGACCGAAGAGGCCTAATGCGCAAACCTGGGATTGGCCTGGTCCCCCTCTACGTGCTGCCGGT-
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATC
* * **
26414919 CTCGCTGCCACAACCCTCGATTC-AGCTAGGG
130 CT-GCTGCCACAACCCTCGATCCGATCTAGAT
* * * * ** * * * * * *
26414950 CTTAGACATGGAATGAGCTCCCTGTGCCTAAGCCAACCTATTAAAATGGGCATGCGAGCACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-CGAAACGAGCGTGCGGGCGCTAAG
* * * * ** *
26415015 CCGACCGAAGAGGCAGAGTGCGTAAGCCGGGGACCGGCTTGGT-CCCCTTTGCGTGCTGTCGATC
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATC
* * * *
26415079 CTACTACCACAAACCTCGGTCCGATCT-GAT
130 CTGCTGCCACAACCCTCGATCCGATCTAGAT
* * *
26415109 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
* * * * * * *
26415173 CCGGTCGAAAAGGCATAATACGCAAGCCAGGGATTGGCCCGGTCCCCCTCTGCGTGCTGCCTG-T
65 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTC-GAT
* * * **
26415237 CCTGCTACCACAACCCTCGGTCCGA-CTGGGG
129 CCTGCTGCCACAACCCTCGATCCGATCTAGAT
* * * * * **
26415268 CTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTAAAT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
* * ** * *
26415333 CGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCAACCCGGTCCCCC-ATGCGTGCTGTCGATCT
66 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
* *
26415397 TGCTGCCACAACCTTCGATCCGAT-TCGAT
131 TGCTGCCACAACCCTCGATCCGATCTAGAT
26415426 CTTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
26415445 TTATGTGCTT
Statistics
Matches: 507, Mismatches: 131, Indels: 32
0.76 0.20 0.05
Matches are distributed among these distances:
157 3 0.01
158 190 0.37
159 256 0.50
160 58 0.11
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (160 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGATCCGATCTAGAT
Found at i:26415282 original size:318 final size:317
Alignment explanation
Indices: 26414632--26415445 Score: 821
Period size: 318 Copynumber: 2.6 Consensus size: 317
26414622 AGCTCCGTAT
* * * * * * *
26414632 GCTTAGACATGGAATGAACTCCGTATGCCGAAGCCAACCCACGAAACGAGCGTGC-AGGCGCTAA
1 GCTTAGACATGGAATGTACTCCCTATGCCTAAGCCAACCCACAAAATGAGCATGCGA-GCACTAA
*** * * * * * * * * *
26414696 GTTGGCCGGAGAGGCAAAATGCACAAACCGGGGATCGATCCGGTCCCCCCTGCATGCTGTCGATC
65 ACCGACCGAAGAGGCAGAATGCACAAGCCGGGGACCAACCCGGTCCCCCATGCGTGCTGTCGATC
* * * * ** * * * *
26414761 TTGCTGCCGCAACCCCCGATCCGGTCTGATCTTCGACTGGGAATGATCTCCGTATGCATAAGTCA
130 CTACTACCACAACCTTCGATCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCA
* ** * * * * * *
26414826 ACCCAGGAAATGAGCGTGCGGGTGCTGAGCCGACCGAAGAGGCCTAATGCGCAAACCTGGGATTG
195 ACCCACGAAACAAGCGTGCGGGCGCTAAGCCGACCGAAAAGGCATAATACGCAAACCAGGGATTG
* * *
26414891 GCCTGGTCCCCCTCTACGTGCTGCCGGTCTCGCTGCCACAACCCTCGATTCAGCTAGG
260 GCCCGGTCCCCCTCTACGTGCTGCCGGTCTCGCTACCACAACCCTCGATCCAGCTAGG
* * * * *
26414949 GCTTAGACATGGAATG-AGCTCCCTGTGCCTAAGCCAACCTATTAAAATGGGCATGCGAGCACTC
1 GCTTAGACATGGAATGTA-CTCCCTATGCCTAAGCCAACCCA-CAAAATGAGCATGCGAGCACTA
* * ** ** ** **
26415013 AGCCGACCGAAGAGGCAGAGTGCGTAAGCCGGGGACCGGCTTGGTCCCCTTTGCGTGCTGTCGAT
64 AACCGACCGAAGAGGCAGAATGCACAAGCCGGGGACCAACCCGGTCCCCCATGCGTGCTGTCGAT
* *
26415078 CCTACTACCACAAACC-TCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
129 CCTACTACCAC-AACCTTCGATCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGT
** *
26415142 CAACCCACGAAACAAGCGTGCGGGCGCTAAGCCGGTCGAAAAGGCATAATACGCAAGCCAGGGAT
193 CAACCCACGAAACAAGCGTGCGGGCGCTAAGCCGACCGAAAAGGCATAATACGCAAACCAGGGAT
* * * *
26415207 TGGCCCGGTCCCCCTCTGCGTGCTGCCTGTC-CTGCTACCACAACCCTCGGTCC-GACTGGG
258 TGGCCCGGTCCCCCTCTACGTGCTGCCGGTCTC-GCTACCACAACCCTCGATCCAG-CTAGG
** * * **
26415267 GCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTAAA
1 GCTTAGACATGGAATGTACTCCCTATGCCTAAGCCAACCCACAAAATGAGCATGCGAGCACTAAA
* ** * *
26415332 TCGGTCGAAGAGGCAGAATGCACAAGCCGGGGATCAACCCGGTCCCCCATGCGTGCTGTCGATCT
66 CCGACCGAAGAGGCAGAATGCACAAGCCGGGGACCAACCCGGTCCCCCATGCGTGCTGTCGATCC
* *
26415397 TGCTGCCACAACCTTCGATCCGAT-TCGATCTTAGACTGGGAATGAACTT
131 TACTACCACAACCTTCGATCCGATCT-GATCTTAGACTGGGAATGAACTT
26415446 TATGTGCTTA
Statistics
Matches: 401, Mismatches: 87, Indels: 18
0.79 0.17 0.04
Matches are distributed among these distances:
316 6 0.01
317 143 0.36
318 246 0.61
319 6 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGTACTCCCTATGCCTAAGCCAACCCACAAAATGAGCATGCGAGCACTAAA
CCGACCGAAGAGGCAGAATGCACAAGCCGGGGACCAACCCGGTCCCCCATGCGTGCTGTCGATCC
TACTACCACAACCTTCGATCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCATAAGTCAA
CCCACGAAACAAGCGTGCGGGCGCTAAGCCGACCGAAAAGGCATAATACGCAAACCAGGGATTGG
CCCGGTCCCCCTCTACGTGCTGCCGGTCTCGCTACCACAACCCTCGATCCAGCTAGG
Found at i:26416566 original size:158 final size:159
Alignment explanation
Indices: 26416171--26416673 Score: 439
Period size: 158 Copynumber: 3.2 Consensus size: 159
26416161 AGCTCCGTAT
* * *
26416171 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATACAGG-CGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-GAGGCCGCTCA
* * **
26416235 -CCGATCGAAGAGGGAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCCTACGTGCTGTCGAG
65 GCCGATCGAAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCCCTACGTGCAATCGAG
* **
26416299 CCTGCTACCACAACCCTCTGTCCGGTCTAA
130 CCAGCTACCACAACCCTCAATCCGGTCTAA
* * * * * * * *
26416329 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACTCACGAAACGAGCGTGCGGGCAG-TA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG-AGGCCGCTC
* ** * * * * * * *
26416392 AGCTGGCCGAAGAGGCATAATGAGCAAGTCGGGGACCGGCCC-ATTCCCCCTCTGCGTGCAATCG
64 AGCCGATCGAAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGA-TCCCCCCCTACGTGCAATCG
* *
26416456 -GTCCAGCTACCACAACCCTCAATCTGG-CTGAG
128 AG-CCAGCTACCACAACCCTCAATCCGGTCT-AA
* * *
26416488 GCTTA-ACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGGCCGCTCAG
* * * * * * * *
26416552 CCGATCGAAAAGGCAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCCCTACATCCTATCGATC
66 CCGATCGAAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCCCTACGTGCAATCGAGC
* ** ** **
26416617 CTGCTACTGCAACCCTCGGTCCGGTCCGA
131 CAGCTACCACAACCCTCAATCCGGTCTAA
*
26416646 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
26416674 TTACACTGGG
Statistics
Matches: 263, Mismatches: 68, Indels: 27
0.73 0.19 0.08
Matches are distributed among these distances:
157 5 0.02
158 164 0.62
159 94 0.36
ACGTcount: A:0.26, C:0.32, G:0.24, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGGCCGCTCAG
CCGATCGAAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCCCTACGTGCAATCGAGC
CAGCTACCACAACCCTCAATCCGGTCTAA
Found at i:26416676 original size:26 final size:26
Alignment explanation
Indices: 26416647--26416699 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26416637 CCGGTCCGAT
* *
26416647 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATAAACTCCGTATG
* *
26416673 CTTACACTGGGAATAAACTCTGTATG
1 CTTACACTAGGAATAAACTCCGTATG
26416699 C
1 C
26416700 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATAAACTCCGTATG
Found at i:26417055 original size:355 final size:352
Alignment explanation
Indices: 26416456--26417438 Score: 1247
Period size: 355 Copynumber: 2.8 Consensus size: 352
26416446 CGTGCAATCG
* * * * *
26416456 GTCCAGCTACCACAACCCTCAATCTGGCTGAGGCTTA-ACATGGAATG-AGCTCCCTATGCCTAA
1 GTCCTGCTGCCACAACCCTCAATCTAGCTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAA
* * * * **
26416519 GCCAACCCATGAAACGAGCGTGTGGCCGCTCAGCCGATCGAAAAGGCAGAATGCGCAAGCCAAGG
65 GCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGCT-GAAGAGGCAGAATGCGCAAGCCGGGG
* * * * * * * * *
26416584 ATCGGCCCGATCCCCCCCTACATCCTATCGATCCTGCTACTGCAACCCTCGGTCCGGTCCGATCT
129 ATCGGCCCGAT--CCCCTTGCGTGCTGTCGATCCTGCTTC-GCAACCCTCGATCCGATCTGATCT
* * * *
26416649 TAGACTAGGAATGAACTCCGTATGCTTACACTGGGAATAAACTCTGTATGCCTAAGTCAACCCAC
191 TAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* **
26416714 GAAACGAGCGTGCGGGCGCTCAACCGGCCGAAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGA
256 GAAACGAGCATGCGGGCGCTCAACCGAACGAAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGA
26416779 TCCCCCTCTGCGTGCTGTCGATCCCGCTGCC-
321 TCCCCCTCTGCGTGCTGTCGATCCCGCTGCCA
**
26416810 GATCCTGCTGCCATGACCCTCAATCTAGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAA
1 G-TCCTGCTGCCACAACCCTCAATCTAGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAA
* * * *
26416875 GCCAACCCATGAAACAAGCGCGCGGGCGCTCAGCCAGCTGGAGAGGCAGAATGCACAAGCCGGGG
65 GCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC-GCTGAAGAGGCAGAATGCGCAAGCCGGGG
** * *
26416940 ATCGGTTC-AGTCCCTCTTGCGTGCTGTGGATCCTGCTGTCGCAACCCTCGATTCGATCTGATCT
129 ATCGGCCCGA-TCCC-CTTGCGTGCTGTCGATCCTGCT-TCGCAACCCTCGATCCGATCTGATCT
* * * * *
26417004 TAGACTGGGAATGAACTCTGTATGCTTGGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTAT
191 TAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *
26417069 GAAACGAGCATGCGGGTGCTCAACCGAACGGAGCGGCATAATGCGTAAGCCGGGGATCAGCCCGG
256 GAAACGAGCATGCGGGCGCTCAACCGAACGAAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGA
*
26417134 TCCCCCTCTTCGTGCTGTCGATCCCGCTGCCA
321 TCCCCCTCTGCGTGCTGTCGATCCCGCTGCCA
* * * * * * *
26417166 GTCTTGCTGCCACAACCCTCAGTC-CGATTGGGGCTTAGCCAAGGCATGTACTCCGTATGCCTAA
1 GTCCTGCTGCCACAACCCTCAATCTAG-CTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAA
* * * *
26417230 GCCAACCCACGAAACGAGCGTGCAGGTGCTCAACCGGCTGAAGAGGCAGAATGCGCAAGCCGGGG
65 GCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC-GCTGAAGAGGCAGAATGCGCAAGCCGGGG
26417295 ATCGGCCCGATCCCCTTGCGTGCTGTCGATCCTGCTATCGCAACCCTCGATCCGATCTGATCTTA
129 ATCGGCCCGATCCCCTTGCGTGCTGTCGATCCTGCT-TCGCAACCCTCGATCCGATCTGATCTTA
** * *
26417360 GACTAGGAATGAGTTCCGTATACTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGA
193 GACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
26417425 AACGAGCATGCGGG
258 AACGAGCATGCGGG
26417439 TGCTTAGCCG
Statistics
Matches: 539, Mismatches: 80, Indels: 20
0.84 0.13 0.03
Matches are distributed among these distances:
354 123 0.23
355 328 0.61
356 85 0.16
357 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (352 bp):
GTCCTGCTGCCACAACCCTCAATCTAGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAG
CCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGCTGAAGAGGCAGAATGCGCAAGCCGGGGAT
CGGCCCGATCCCCTTGCGTGCTGTCGATCCTGCTTCGCAACCCTCGATCCGATCTGATCTTAGAC
TAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCATGCGGGCGCTCAACCGAACGAAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGATCCCC
CTCTGCGTGCTGTCGATCCCGCTGCCA
Found at i:26418436 original size:26 final size:26
Alignment explanation
Indices: 26418419--26418485 Score: 134
Period size: 26 Copynumber: 2.6 Consensus size: 26
26418409 TAGACTATGA
26418419 ATGAACTCCGTATGCTTAGACTGGGG
1 ATGAACTCCGTATGCTTAGACTGGGG
26418445 ATGAACTCCGTATGCTTAGACTGGGG
1 ATGAACTCCGTATGCTTAGACTGGGG
26418471 ATGAACTCCGTATGC
1 ATGAACTCCGTATGC
26418486 CTAAGTCAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (26 bp):
ATGAACTCCGTATGCTTAGACTGGGG
Found at i:26418829 original size:26 final size:26
Alignment explanation
Indices: 26418790--26418840 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26418780 GGTTCGATCT
26418790 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
* *
26418816 TAGATTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
26418841 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:26419174 original size:26 final size:26
Alignment explanation
Indices: 26419145--26419198 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
26419135 GGTTTGATCT
26419145 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
* **
26419171 TAGACTGGGGATGAACTTTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
26419197 TA
1 TA
26419199 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:26419626 original size:367 final size:361
Alignment explanation
Indices: 26418433--26419958 Score: 1474
Period size: 355 Copynumber: 4.2 Consensus size: 361
26418423 ACTCCGTATG
* *
26418433 CTTAGACTGGGGATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * *
26418498 ATGAAACGAGCGTACGGG--CA-CTC-A-ACGG--G-TCGAAGAGGCATAATGCGCAAGTCAGGG
66 AAGAAACGAGCGTGCGGGCTCAGCTCGAGA-GGTCGACCGAAGAGGCATAATGCGCAAGCCAGGG
* * ** *
26418555 ATCAGCCCGGTCCCCCTCTGCATGCTGTCGATCTCGCTGTCGGTCCTGCTGCCACAACCCTCAGT
130 ATCAGCCCGGTCCCCCTCTGCATGCTG-CCATCCCGCTACCGATCCTGCTGCCACAACCCTCAGT
* * * * *
26418620 CCGACTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCTACGAAATGAGCGTGCG
194 CCGACTAGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAA-CAGCGTGCG
* * * * *
26418685 GGCGCTCAGTCGACCGAAAAGGTAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTGCGTAC
258 GGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTGCGTAC
* * *
26418750 -GGCTGATCCTGCTGTCGCAACCCTCGATCTGGT-TCGAT
323 TGTCTGATCCTACTGTCGCAACCCTCGATCCGGTCT-GAT
* * *
26418788 CTTAGACTGGGAATGAACTCCGTATGCATAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCC
* * *
26418853 ATA-AAACGAGCGTGCGGG--CA-CTC---A-GTCGATCGAAGAGGCATAATGCACAAGCCGGGG
66 A-AGAAACGAGCGTGCGGGCTCAGCTCGAGAGGTCGACCGAAGAGGCATAATGCGCAAGCCAGGG
* * ** * * *
26418910 ATCAGCCTGGTCCCTCTCTGTGTGCTGCCGATCCCGCTATCGATCCTGCTACCACCACCCTCAGT
130 ATCAGCCCGGTCCCCCTCTGCATGCTGCC-ATCCCGCTACCGATCCTGCTGCCACAACCCTCAGT
* * * * *
26418975 CCGGCTAGGGCTTAGGCATGGAATG-AGCTCCCTATGCCTAAGCCAACCCACGAAAC-GGGAATA
194 CCGACTAGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACCCACGAAACAGCG--TG
* * * * * * *
26419038 CAGGCGCTAAACC-AGTCAGAGAGGCAGAATGCATAAG-TCGAGGATCGGCCC-AGTCCCCCCTG
256 CGGGCGCTCAGCCGA-CCGGAGAGGCAGAATGCGTAAGCT-GGGGATCGGCCCGA-TCCCCCCTG
* * * * ** * * *
26419100 CATGCTGTC-GATCTTACTGCCGCAATGCTTGGTCCGGTTTGAT
318 CGTACTGTCTGATCCTACTGTCGCAACCCTCGATCCGGTCTGAT
* * **
26419143 CTTAGACTGGGAATGAACTCCGTATGCCTAGACTGGGGATGAACTTTGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCC
* * * *
26419208 ACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGTCGGCCAAAGAGGCTTAATGCGCAAGC
66 AAGAAACGAGCGTGC-GG-GCTCAG-C--TC-GAGAGGTCGACCGAAGAGGCATAATGCGCAAGC
* * * ** * *
26419273 TAGAGATCAACCCGGTCCCCCTCTGCATGCCACCACTCCCGCTGCC-AGTCTTGCTGCCACAACC
125 CAGGGATCAGCCCGGTCCCCCTCTGCATGCTGCCA-TCCCGCTACCGA-TCCTGCTGCCACAACC
* ** *
26419337 CTCGGTCCGACTAGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCACAAAATCAG
188 CTCAGTCCGACTAGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAA-CAG
* * * *
26419402 CGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGTAAGCTGGGGATCAGCCCGGT-CCCCCT
252 CGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCT
* * * * *
26419466 ACGTGCTGTC-AATACTACTATCGCAACCCTCGATCCGGTCTGAT
317 GCGTACTGTCTGATCCTACTGTCGCAACCCTCGATCCGGTCTGAT
** * *
26419510 CTTAGACTGGGAATGAACTCCCCATGCTTAGACTAGGGATGAACTCCGTGTGCATAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCC
* * *
26419575 AAGAAATGAGTGTGCAGGTGCTCAGCCAACCAGAGAGGTCGACCGAAGAGGCATAATGCGCAAGC
66 AAGAAACGAGCGTGC-GG-GCTCAG-C--TC-GAGAGGTCGACCGAAGAGGCATAATGCGCAAGC
* * * * ** * *
26419640 CGGGGATCAGCCCGGTCCTCCTCTACGTGCTGTCGGTCCCGCTACCGCTCTTGCTGCCACAACCC
125 CAGGGATCAGCCCGGTCCCCCTCTGCATGCTG-CCATCCCGCTACCGATCCTGCTGCCACAACCC
* * * * * * *
26419705 TCTA-TTCGGCTGGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCTAACCCATGAAACGAA
189 TC-AGTCCGACTAGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAAC-AG
* * *
26419769 CGTGCGGGCGCAT-AGCCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGGCCGATCCCCCC
252 CGTGCGGGCGC-TCAGCCGACCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCC
* * * * *
26419833 TGCGTACTG-CTGATCCTGCTGTCGTAACCCTCGATCCGCTCCGTT
316 TGCGTACTGTCTGATCCTACTGTCGCAACCCTCGATCCGGTCTGAT
* * * *
26419878 CTTAGACTGGGAACGAACTCCGTATGCTTAGACTAGGGATGAACTTCGTACGCCTTAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCC
*
26419943 ATGAAACGAGCGTGCG
66 AAGAAACGAGCGTGCG
26419959 AGCATTTAGC
Statistics
Matches: 948, Mismatches: 181, Indels: 72
0.79 0.15 0.06
Matches are distributed among these distances:
352 1 0.00
353 2 0.00
354 6 0.01
355 353 0.37
356 5 0.01
357 1 0.00
359 2 0.00
361 1 0.00
363 2 0.00
366 1 0.00
367 300 0.32
368 269 0.28
369 3 0.00
370 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (361 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCC
AAGAAACGAGCGTGCGGGCTCAGCTCGAGAGGTCGACCGAAGAGGCATAATGCGCAAGCCAGGGA
TCAGCCCGGTCCCCCTCTGCATGCTGCCATCCCGCTACCGATCCTGCTGCCACAACCCTCAGTCC
GACTAGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAGCGTGCGGGC
GCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGATCCCCCCTGCGTACTGT
CTGATCCTACTGTCGCAACCCTCGATCCGGTCTGAT
Found at i:26419934 original size:27 final size:26
Alignment explanation
Indices: 26419878--26419935 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
26419868 CCGCTCCGTT
*
26419878 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTACG
* *
26419904 CTTAGACTAGGG-ATGAACTTCGTACG
1 CTTAGACT-GGGAACGAACTCCGTACG
26419930 CCTTAG
1 -CTTAG
26419936 TCAACCCATG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 19 0.70
27 8 0.30
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTACG
Found at i:26419940 original size:735 final size:709
Alignment explanation
Indices: 26418424--26419958 Score: 1714
Period size: 735 Copynumber: 2.1 Consensus size: 709
26418414 TATGAATGAA
* *
26418424 CTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTA
1 CTCCGT-T-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTA
* *
26418489 AGTCAACCCATGAAACGAGCGTACGGGCACTCAACGGGTCGAAGAGGCATAATGCGCAAGTCAGG
64 AGTCAACCCATGAAACGAGCGTGCGGGCACTCAACGGGTCGAAGAGGCATAATGCGCAAGTCAGA
* ** * * * *
26418554 GATCAGCCCGGTCCCCCTCTGCATGCTGTCGATCTCGCTGTCGGTCCTGCTGCCACAACCCTCAG
129 GATCAACCCGGTCCCCCTCTGCATGCTCACCATCCCGCTGCCAGTCCTGCTGCCACAACCCTCAG
* * * * *
26418619 TCCGACTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCTACGAAATGAGCGTGC
194 TCCGACTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACAAAATCAGCGTGC
* * *
26418684 GGGCGCTCAGTCGACCGAAAAGGTAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCTGCGTA
259 GGGCGCTCAGCCGACCGAAAAGGTAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCCTACGTA
* * * * * **
26418749 CGGCTGATCCTGCTGTCGCAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATG
324 CGGCTAATACTACTATCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCCCATG
* * * *
26418814 CATAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCACTCAGT
389 CATAGACTAGGGATGAACTCCGTATGCATAAGTCAACCCATAAAACGAGCGTGCGGGCACCCAGT
* * **
26418879 CGATCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCTGGTCCCTCTCTGTGTGCTGCCGATCC
454 CGACCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCCGGTCCCTCTCTACGTGCTGCCGATCC
* * *
26418944 CGCTATCGATCCTGCTACCACCACCCTCAGTCCGGCTAGGGCTTAGGCATGGAATGAGCTCCCTA
519 CGCTACCGATCCTGCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAGCTCCCTA
*
26419009 TGCCTAAGCCAACCCACGAAACGGGAATACAGGCGCTAAACCAGTCAGAGAGGCAGAATGCATAA
584 TGCCTAAGCCAACCCACGAAAC-GGAATACAGGCGCTAAACCAGTCAGAGAGGCAGAATGCACAA
* * ** * *
26419074 GTCGAGGATCGGCCCAGTCCCCCCTGCATGCTGTCGATCTTACTGCCGCAATGCTTGGTCCG
648 GTCGAGGATCGGCCCAGTCCCCCCTGCATACTGTCGATCCTACTGCCGCAACCCTCGATCCG
* ** * * *
26419136 GTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTGGGGATGAACTTTGTATGCCTAAG
1 CTCCGTTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAG
* * * *
26419201 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGTCGGCCAAAGAGGCTTAATG
66 TCAACCCATGAAACGAGCGTGCGGGCACTCA-----AC---G-GGTC-G---AAGAGGCATAATG
*
26419266 CGCAAG-CTAGAGATCAACCCGGTCCCCCTCTGCATGC-CACCACTCCCGCTGCCAGTCTTGCTG
118 CGCAAGTC-AGAGATCAACCCGGTCCCCCTCTGCATGCTCACCA-TCCCGCTGCCAGTCCTGCTG
* *
26419329 CCACAACCCTCGGTCCGACTAGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
181 CCACAACCCTCAGTCCGACTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCAC
* * * * *
26419394 AAAATCAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGTAAGCTGGGGATCAGCCCGG
246 AAAATCAGCGTGCGGGCGCTCAGCCGACCGAAAAGGTAGAATGCGTAAGCCGGGGATCAGCCCGA
* *
26419459 T-CCCCCTACGTGCTG-TCAATACTACTATCGCAACCCTCGATCCGG-TCTGATCTTAGACTGGG
311 TCCCCCCTACGTACGGCT-AATACTACTATCGCAACCCTCGATCCGGTTC-GATCTTAGACTGGG
* * *
26419521 AATGAACTCCCCATGCTTAGACTAGGGATGAACTCCGTGTGCATAAGTCAACCCA-AGAAATGAG
374 AATGAACTCCCCATGCATAGACTAGGGATGAACTCCGTATGCATAAGTCAACCCATA-AAACGAG
* *
26419585 TGTGCAGGTGCTCAGCCAACCAGAGAGGTCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCAG
438 CGTGC-GG-G--CA--C--CC----A-GTCGACCGAAGAGGCATAATGCACAAGCCGGGGATCAG
* * * * * *
26419650 CCCGGT-CCTCCTCTACGTGCTGTCGGTCCCGCTACCGCTCTTGCTGCCACAACCCTCTA-TTCG
490 CCCGGTCCCT-CTCTACGTGCTGCCGATCCCGCTACCGATCCTGCTACCACAACCCTC-AGTCCG
* ** * * * *
26419713 GCTGGGGCTTAGACATGGAATGTA-CTCTGTATGCCTAAGCTAACCCATGAAAC-GAACGTGCGG
553 GCTAGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCACGAAACGGAA--TACAG
* * * * * *
26419776 GCGC-ATAGCC-GATCGGAGAGGCAGAATGCGCAAG-CTGGGGATCGGGCC-GATCCCCCCTGCG
615 GCGCTA-AACCAG-TCAGAGAGGCAGAATGCACAAGTC-GAGGATCGGCCCAG-TCCCCCCTGCA
* * *
26419837 TACTG-CTGATCCTGCTGTCGTAACCCTCGATCCG
676 TACTGTC-GATCCTACTGCCGCAACCCTCGATCCG
* * * *
26419871 CTCCGTTCTTAGACTGGGAACGAACTCCGTATGCTTAGACTAGGGATGAACTTCGTACGCCTTAG
1 CTCCGTTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAG
26419936 TCAACCCATGAAACGAGCGTGCG
66 TCAACCCATGAAACGAGCGTGCG
26419959 AGCATTTAGC
Statistics
Matches: 680, Mismatches: 102, Indels: 59
0.81 0.12 0.07
Matches are distributed among these distances:
710 82 0.12
711 1 0.00
712 2 0.00
715 1 0.00
718 1 0.00
719 4 0.01
720 1 0.00
721 4 0.01
722 109 0.16
723 180 0.26
724 1 0.00
726 2 0.00
728 1 0.00
730 1 0.00
733 3 0.00
734 9 0.01
735 276 0.41
736 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (709 bp):
CTCCGTTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAG
TCAACCCATGAAACGAGCGTGCGGGCACTCAACGGGTCGAAGAGGCATAATGCGCAAGTCAGAGA
TCAACCCGGTCCCCCTCTGCATGCTCACCATCCCGCTGCCAGTCCTGCTGCCACAACCCTCAGTC
CGACTAGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACAAAATCAGCGTGCGG
GCGCTCAGCCGACCGAAAAGGTAGAATGCGTAAGCCGGGGATCAGCCCGATCCCCCCTACGTACG
GCTAATACTACTATCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCCCATGCA
TAGACTAGGGATGAACTCCGTATGCATAAGTCAACCCATAAAACGAGCGTGCGGGCACCCAGTCG
ACCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCCGGTCCCTCTCTACGTGCTGCCGATCCCG
CTACCGATCCTGCTACCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAGCTCCCTATG
CCTAAGCCAACCCACGAAACGGAATACAGGCGCTAAACCAGTCAGAGAGGCAGAATGCACAAGTC
GAGGATCGGCCCAGTCCCCCCTGCATACTGTCGATCCTACTGCCGCAACCCTCGATCCG
Found at i:26421456 original size:26 final size:26
Alignment explanation
Indices: 26421427--26421479 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26421417 CCGACCTAAT
*
26421427 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26421453 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26421479 C
1 C
26421480 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26421587 original size:12 final size:12
Alignment explanation
Indices: 26421570--26421598 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
26421560 CCCCTCTGCG
26421570 TGCTGTCGATCC
1 TGCTGTCGATCC
26421582 TGCTGTCGATCC
1 TGCTGTCGATCC
26421594 TGCTG
1 TGCTG
26421599 CCACAACCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.31, G:0.28, T:0.34
Consensus pattern (12 bp):
TGCTGTCGATCC
Found at i:26421823 original size:26 final size:27
Alignment explanation
Indices: 26421780--26421837 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
26421770 CCGGTCTGAT
26421780 CTTAGACTGGGAACGAAC-TCTGTATG-
1 CTTAGACTGGGAACGAACTTC-GTATGC
*
26421806 CTTAGACTAGGG-ATGAACTTCGTATGC
1 CTTAGACT-GGGAACGAACTTCGTATGC
26421833 CTTAG
1 CTTAG
26421838 TCAACCCACG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 18 0.64
27 10 0.36
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAACGAACTTCGTATGC
Found at i:26423055 original size:26 final size:26
Alignment explanation
Indices: 26423004--26423056 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26422994 CTGGTCCGAT
**
26423004 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCATATG
* *
26423030 CTTAGACTGGGGATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
26423056 C
1 C
26423057 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:26423369 original size:26 final size:26
Alignment explanation
Indices: 26423333--26423385 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26423323 CCGGTCCGAT
*
26423333 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26423359 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26423385 C
1 C
26423386 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26423809 original size:158 final size:159
Alignment explanation
Indices: 26423542--26423829 Score: 391
Period size: 158 Copynumber: 1.8 Consensus size: 159
26423532 CCGACTAGGG
* * *
26423542 CTTAGATGTGGAATGTACTCCATATGCCTAAGCCAACCCACGAAATGAACGTGCGGGAGCTCAAC
1 CTTAGATGTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAACGTACGAGAGCTCAAC
* * *
26423607 CGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCAATCCCCC-CTACATGCTGTCGATCC
66 CGGCCAGAGAGGCAGAATACGCAAGCCAGGGATCAACCCAATCCCCCTCTACATGCTGCCGATCC
26423671 TATTACCACAACCCTCGATCCGATCCAAT
131 TATTACCACAACCCTCGATCCGATCCAAT
* * * * *
26423700 CTTAGACTG-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGAGCGCTCAG
1 CTTAGA-TGTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAACGTACGAGAGCTCAA
* * * * * * *
26423764 TCGGTCGGAGAGGCATAATACGTAAGCCAGGGATCAACCCGATCCCCCTCTGCATGCTGCCGATC
65 CCGGCCAGAGAGGCAGAATACGCAAGCCAGGGATCAACCCAATCCCCCTCTACATGCTGCCGATC
26423829 C
130 C
26423830 CGTTGCCGGT
Statistics
Matches: 110, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
158 93 0.85
159 17 0.15
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.18
Consensus pattern (159 bp):
CTTAGATGTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAACGTACGAGAGCTCAAC
CGGCCAGAGAGGCAGAATACGCAAGCCAGGGATCAACCCAATCCCCCTCTACATGCTGCCGATCC
TATTACCACAACCCTCGATCCGATCCAAT
Found at i:26423983 original size:329 final size:329
Alignment explanation
Indices: 26423437--26424056 Score: 818
Period size: 329 Copynumber: 1.9 Consensus size: 329
26423427 CCGGAGAGGC
** * * ** * *
26423437 CGGTCGGAGAGGCATAATGTGCAAGTCAGGGATAAGCCCGGTCCCCCTCTGTGTGGTGCCATCTC
1 CGGTCGGAGAGGCATAATACGCAAGCCAGGGATAAGCCCGATCCCCCTCTGCATGCTGCCATCCC
* * *
26423502 GCTGCCGGTCCTGCTACCACAACCTTCGGTCCGACTAGGGCTTAGATGTGGAATGTACTCCATAT
66 GCTGCCGGTCCTGCTACCACAACCATCAGTCCGACTAGGGCTTAGACGTGGAATGTACTCCATAT
* *
26423567 GCCTAAGCCAACCCACGAAATGAACGTGCGGGAGCTCAACCGGCCAGAGAGGCAGAATGCGCAAG
131 GCCTAAGCCAACCCACGAAACGAACGTGCGGGAGCTCAACCGGCCAGAGAGGCAAAATGCGCAAG
*
26423632 CCAGGGATCAGCCCAAT-CCCCCCTACATGCTG-TCGATCCTATTACCACAACCCTCGATCCGAT
196 CCAGGGATCAGCCCAATCCCCCCCTACATGCTGCT-GATCCTAGTACCACAACCCTCGATCCGAT
*
26423695 CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGAGCGC
260 CCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGAGCGC
26423760 TCAGT
325 TCAGT
*
26423765 CGGTCGGAGAGGCATAATACGTAAGCCAGGGATCAA-CCCGATCCCCCTCTGCATGCTGCCGATC
1 CGGTCGGAGAGGCATAATACGCAAGCCAGGGAT-AAGCCCGATCCCCCTCTGCATGCTGCC-ATC
* * ** * *
26423829 CCGTTGCCGGTCCTGCTGCCACAACCATCAGTCCGGTTGGGGCTTAGACGTGGAATGTACTCCGT
64 CCGCTGCCGGTCCTGCTACCACAACCATCAGTCCGACTAGGGCTTAGACGTGGAATGTACTCCAT
* * * * ** *
26423894 ATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTCAGCTGGCTGGAGAGGCAAAATGCGTA
129 ATGCCTAAGCCAACCCACGAAACGAACGTGCGGGAGCTCAACCGGCCAGAGAGGCAAAATGCGCA
* * * * * * * *
26423959 AG-CTGGAGATC-GACCTAGTCCCCCCCTGCGTGCTGCTGATCCTGGTGCCACAACCCTCGATTC
194 AGCCAGG-GATCAG-CCCAATCCCCCCCTACATGCTGCTGATCCTAGTACCACAACCCTCGATCC
*
26424022 GATCCGATCTTAGACTGGGAATGAACTCCATATGC
257 GATCCAATCTTAGACTGGGAATGAACTCCATATGC
26424057 TTAGACTGGG
Statistics
Matches: 248, Mismatches: 38, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
328 53 0.21
329 126 0.51
330 68 0.27
331 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (329 bp):
CGGTCGGAGAGGCATAATACGCAAGCCAGGGATAAGCCCGATCCCCCTCTGCATGCTGCCATCCC
GCTGCCGGTCCTGCTACCACAACCATCAGTCCGACTAGGGCTTAGACGTGGAATGTACTCCATAT
GCCTAAGCCAACCCACGAAACGAACGTGCGGGAGCTCAACCGGCCAGAGAGGCAAAATGCGCAAG
CCAGGGATCAGCCCAATCCCCCCCTACATGCTGCTGATCCTAGTACCACAACCCTCGATCCGATC
CAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTACGAGCGCT
CAGT
Found at i:26424066 original size:26 final size:26
Alignment explanation
Indices: 26424030--26424081 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
26424020 TCGATCCGAT
26424030 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26424056 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26424082 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26425619 original size:356 final size:356
Alignment explanation
Indices: 26425080--26426068 Score: 1073
Period size: 356 Copynumber: 2.7 Consensus size: 356
26425070 CCAATCCCAT
* * * *
26425080 TGCCACAACCCTCGGTTCGGCTGGGGGTTAGACATGGAAT-TAGCTCCCTATGCGTAAGCCAACC
1 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAAGCCAACC
* ** * * *
26425144 CACGAAACGGGCGTGCTAGCGCTCAGCCGACCGGAGAAGCAAGATGCGCAAGTCGGGGATCGGCC
65 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAA-ATGCGCAAGTCGGGGATCGACC
* * * * * * * *
26425209 CGGTCCCCCCTACGTGCTACCGATCTTGC-GACCGTAATCCTCGGTCTGGTCTGATCTTAGACTA
129 CGATCCCCCCTACGTGCTACCGATCCTACTGTCC--AACCCTC-AT-TCGTCTGATCTTAGACTG
* * * **
26425273 GGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCTGTATGCCTAAGTCAACCCATAAAACGA
190 GGAATGAACTACGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * *
26425338 GCGTGCGGGCGCTCAGTCAGCCGGAGAGG-CTGGTCGGAGAGGCATAATGCTTAAGCCAGGGATC
255 GCGTGCGGGCACTCAGCCAGCCGGAGAGGTC-GGCCGGAGAGGCATAACGCATAAGCCAGGGATC
* *
26425402 AGCCCGATCCCCC-TCT-A-CG-T-GCTGTCGGTCCTGC
319 AGCCCGA-CCCCCTTCTCAGCGATCGCTGTCGATCCTAC
* * * *
26425436 TGCCCCAACCCTCGGTCCGGCTGGGGCTTAGACCTGGAATGTACTCTGTATGCCTAAGCCTACCC
1 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCC
* * * *
26425501 ACGAAATGAGCGTACGGGCGCTCAGTCGGCCGGAGAGGCACAATGCGTAAGTCGGGGATCGACCC
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCA-AATGCGCAAGTCGGGGATCGACCC
*
26425566 GATCCCCCCTACGTGGTACCGATCCTACTGTCACAACCCTCAATTCAGTCTGATCTTAGACTGGG
130 GATCCCCCCTACGTGCTACCGATCCTACTGTC-CAACCCTC-ATTC-GTCTGATCTTAGACTGGG
* * * *
26425631 AATTAACTTCGTATGCTTAGACTGGGGATGAATTCCGTATGCCTAAGTTAACCCACGAAACGAGC
192 AATGAACTACGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * *
26425696 GTACGGGCACTCAGCCGGCTGGAGAGGTCGGCCGGAGAGGCATAACGCATAAGCCAGGGATCAGC
257 GTGCGGGCACTCAGCCAGCCGGAGAGGTCGGCCGGAGAGGCATAACGCATAAGCCAGGGATCAGC
*
26425761 CCGACCCCCTTCTGCATGCTGCGATCTCGCTGTCGATCTTAC
322 CCGACCCCCTTCT-CA----GCGA--TCGCTGTCGATCCTAC
* * *
26425803 TGCCACAACCCTCGGTCCGGCAGAGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCC
* * * * * * * * *
26425868 ATGAAACAATCGTGCGGGCGTTCAACCGGTCTGAGAGGTAGAATGCGCAAGTCGGGGAT-TAGCC
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCA-AATGCGCAAGTCGGGGATCGA-CC
* * * * *
26425932 CGAT-CCCCCTGCGTACTATCGATCCTACTGTCGCAGCCCTTGATTCGATCT-ACTCTTAGACTG
129 CGATCCCCCCTACGTGCTACCGATCCTACTGTC-CAACCC-TCATTCG-TCTGA-TCTTAGACTG
* *
26425995 GGAATGAACTATGTATCCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
190 GGAATGAACTACGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
*
26426060 GTGTGCGGG
255 GCGTGCGGG
26426069 TGCTTAGCTG
Statistics
Matches: 529, Mismatches: 82, Indels: 34
0.82 0.13 0.05
Matches are distributed among these distances:
355 6 0.01
356 274 0.52
357 6 0.01
358 2 0.00
363 2 0.00
365 2 0.00
366 114 0.22
367 123 0.23
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (356 bp):
TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAAATGCGCAAGTCGGGGATCGACCCG
ATCCCCCCTACGTGCTACCGATCCTACTGTCCAACCCTCATTCGTCTGATCTTAGACTGGGAATG
AACTACGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
GGGCACTCAGCCAGCCGGAGAGGTCGGCCGGAGAGGCATAACGCATAAGCCAGGGATCAGCCCGA
CCCCCTTCTCAGCGATCGCTGTCGATCCTAC
Found at i:26425669 original size:26 final size:26
Alignment explanation
Indices: 26425620--26425672 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26425610 TCAGTCTGAT
*
26425620 CTTAGACTGGGAATTAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
26425646 CTTAGACTGGGGATGAA-TTCCGTATG
1 CTTAGACTGGGAATGAACTT-CGTATG
26425672 C
1 C
26425673 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Done.