Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 274 of 402
Found at i:26426036 original size:26 final size:26
Alignment explanation
Indices: 26425986--26426036 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26425976 TCGATCTACT
*
26425986 CTTAGACTGGGAATGAACTATGTATC
1 CTTAGACTGGGAATGAACTACGTATC
* *
26426012 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTACGTAT
26426037 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATC
Found at i:26428397 original size:26 final size:26
Alignment explanation
Indices: 26428361--26428413 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26428351 CCGGTTCGAT
*
26428361 CTTAGGCTGGGAATCAACTCTGTATG
1 CTTAGACTGGGAATCAACTCTGTATG
* *
26428387 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCTGTATG
26428413 C
1 C
26428414 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCTGTATG
Found at i:26428470 original size:13 final size:13
Alignment explanation
Indices: 26428452--26428477 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26428442 AGCGCTCAGT
26428452 CGATCGGAGAGGC
1 CGATCGGAGAGGC
26428465 CGATCGGAGAGGC
1 CGATCGGAGAGGC
26428478 ATAATACGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.46, T:0.08
Consensus pattern (13 bp):
CGATCGGAGAGGC
Found at i:26429914 original size:26 final size:26
Alignment explanation
Indices: 26429885--26429935 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26429875 CCAGTCCGAT
26429885 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26429911 CTTAGACTGGGGATGAATTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
26429936 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26430423 original size:26 final size:26
Alignment explanation
Indices: 26430387--26430439 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26430377 CCGGTCCGAT
*
26430387 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGGATG
* *
26430413 CTTAGACTGGGGATTAACTCTGGATG
1 CTTAGACTGGGAATGAACTCTGGATG
26430439 C
1 C
26430440 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGGATG
Found at i:26432253 original size:26 final size:26
Alignment explanation
Indices: 26432224--26432276 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26432214 CCGATCTGAT
26432224 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
26432250 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26432276 C
1 C
26432277 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26434386 original size:159 final size:159
Alignment explanation
Indices: 26434016--26434512 Score: 524
Period size: 158 Copynumber: 3.1 Consensus size: 159
26434006 AGCTCCGTAT
* * * **
26434016 GCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCAAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * **
26434081 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAATCGGTCCCC-CCTACGTGCTGTTCATC
66 CCGACCGGAGAGGCAAAATGCGCAAGTCGGGGATCGGCTCGGTCCCCTCCTACGTGCTGTTCATC
* **
26434145 CTGTTGCTGCAACCCTCGGTCTGGTCTGA
131 CTGCTGCCACAACCCTCGGTCTGGTCTGA
* * * * *
26434174 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAG-TCAACCCACGAAACAAGCGTGCGGGCGCTA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCT-AACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * *
26434237 AGCCGGCCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCTTCTGCGTGTTG-TCG
64 AGCCGACCGGAGAGGCAAAATGCGCAAGTCGGGGATCGGCTCGGTCCCCTCCTACGTGCTGTTC-
* *
26434301 ATCTTGCTGCCACAACCCTCGGTCTGG-CTGGG
128 ATCCTGCTGCCACAACCCTCGGTCTGGTCT-GA
* * * *
26434333 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTATCCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
26434398 CCGATCGGATAGGCAAAATGCGCAAGTCGGGGATCGGCTCGGCCCCCT-CTATGTGCTG-TCGAT
66 CCGACCGGAGAGGCAAAATGCGCAAGTCGGGGATCGGCTCGGTCCCCTCCTACGTGCTGTTC-AT
* * * **
26434461 GCTACTGTCGTAACCCTCGGTCTGGTCTGA
130 CCTGCTGCCACAACCCTCGGTCTGGTCTGA
*
26434491 TCTTAGAC-TGGGAATGAACTCC
1 GCTTAGACAT-GGAATGAACTCC
26434513 GTTTGCTTAG
Statistics
Matches: 279, Mismatches: 51, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 147 0.53
159 128 0.46
160 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAAAATGCGCAAGTCGGGGATCGGCTCGGTCCCCTCCTACGTGCTGTTCATC
CTGCTGCCACAACCCTCGGTCTGGTCTGA
Found at i:26434889 original size:26 final size:26
Alignment explanation
Indices: 26434860--26434912 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26434850 CTGGTCCGAT
26434860 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26434886 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26434912 C
1 C
26434913 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26435240 original size:26 final size:26
Alignment explanation
Indices: 26435211--26435263 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26435201 CTGGTCCGAT
*
26435211 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26435237 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26435263 C
1 C
26435264 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26435241 original size:351 final size:351
Alignment explanation
Indices: 26434175--26435335 Score: 1370
Period size: 351 Copynumber: 3.3 Consensus size: 351
26434165 CTGGTCTGAT
* * * * *
26434175 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCGCTAAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGGGCGGGCGCTCAGC
* * *
26434240 CGGCCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCT-T-CTG----CG---T-G
66 CGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCTCTGCTGCTACCGATCTCG
* * * * *
26434295 TTGTCGATCTTGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATG
131 CTGTCGATCCTGCTGCCACAACCCTCGGTC--GCTGGGGCTTAGACGTGGAATGTACTCCGTATG
* * * * *
26434360 CCT-AAGCTATCCCACGAAATGGGCGTGCGGGCGCTCAGCCGATCGGATAGGCAAAATGCGCAAG
194 CCTAAATC-AACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATACGCAAG
* * * * * *
26434424 TCGGGGATCGGCTCGG-CCCCCTCTATGTGCTGTCGATGCTACTGTCGTAACCCTCGGTCTGGTC
258 TCGAGGATCGGCCCGGTCCCCC-CTACGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCTGGTC
* *
26434488 TGATCTTAGACTGGGAATGAACTCCGTTTG
322 CGATCTTAGACTGGGAATGAACTCCGTATG
*
26434518 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGGAATGA-GCATGCGGGCGTTCAG
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA-CGAA--ACG-A-GCGGGCG----G
* * * * *
26434582 CCGATCGGAGAGGCCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCCTGGTCCCCCTCTG
57 GCGCTC----A-GCCGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGT-CCCCTCTG
* *
26434647 CGTGCTACCGATCCCGCTGTCGGTCCTGCTGCCACAACCCTCGGTTCGACTGGGGCTTAGACGTG
116 C-TGCTACCGATCTCGCTGTCGATCCTGCTGCCACAACCCTCGG-TCG-CTGGGGCTTAGACGTG
* * * * *
26434712 GAATGTACTCCGTATGCCTAAGGT-AACCCACGAAACGAGCGTGCGGCCGCTCAGCTG-GCTGGA
178 GAATGTACTCCGTATGCCTAA-ATCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATC-GGA
* * * * * * * *
26434775 GAGCCAGAATACGTAAG-CCAGGGATTGGCCCGATCCCTCCTACGTGCTGTCGATCCTGCTGCCG
241 GAGGCAAAATACGCAAGTCGA-GGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGTCG
*
26434839 TAACCCTTGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
305 TAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
**
26434886 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCGTGAAACGAGCGGGCGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGGGCGGGCGCTCAGC
26434951 CGACCGGAGAGGCATAATGCGCAAG-CTGGGGATCAGCCCGGTCCCTCTCTGCATGCTACCGATC
66 CGACCGGAGAGGCATAATGCGCAAGTC-GGGGATCAGCCCGGTCCC-CTCTGC-TGCTACCGATC
26435015 TCGCTGTCGATCCTGCTGCCACAACCCTCGGTC-C-GGGGCTTAGACGTGGAATGTACTCCGTAT
128 TCGCTGTCGATCCTGCTGCCACAACCCTCGGTCGCTGGGGCTTAGACGTGGAATGTACTCCGTAT
* * * *
26435078 ACCTAAATCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGATCGGAGAGGCAAAATACGCATG
193 GCCTAAATCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATACGCAAG
* * *
26435143 TCGAGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCTGCTATCGCAACCCTCGATCTGGTCC
258 TCGAGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCTGGTCC
*
26435208 GATCTTAGACTGGGAATGAACTCTGTATG
323 GATCTTAGACTGGGAATGAACTCCGTATG
* *
26435237 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGGGCGGGCGCTCAGC
* **
26435302 CGACCAGAGAGGCAGGATGCGCAAGTCGGGGATC
66 CGACCGGAGAGGCATAATGCGCAAGTCGGGGATC
26435336 GAACGGGTGG
Statistics
Matches: 692, Mismatches: 86, Indels: 72
0.81 0.10 0.08
Matches are distributed among these distances:
343 38 0.05
344 3 0.00
346 2 0.00
347 6 0.01
350 1 0.00
351 253 0.37
352 5 0.01
354 6 0.01
355 87 0.13
356 39 0.06
357 5 0.01
358 1 0.00
359 1 0.00
360 7 0.01
364 9 0.01
365 2 0.00
366 1 0.00
367 6 0.01
368 213 0.31
369 7 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (351 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGGGCGGGCGCTCAGC
CGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCTCTGCTGCTACCGATCTCG
CTGTCGATCCTGCTGCCACAACCCTCGGTCGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCC
TAAATCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATACGCAAGTCG
AGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCTGGTCCGAT
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26437735 original size:26 final size:26
Alignment explanation
Indices: 26437706--26437756 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
26437696 CCGATTCGAT
26437706 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTTGTATG
*
26437732 CTTAGACTGGGGATGAACTTTGTAT
1 CTTAGACTGGGAATGAACTTTGTAT
26437757 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.35
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTTGTATG
Found at i:26438468 original size:26 final size:26
Alignment explanation
Indices: 26438439--26438491 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26438429 GGCTCAAAAT
* *
26438439 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
26438465 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
26438491 C
1 C
26438492 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:26438571 original size:990 final size:991
Alignment explanation
Indices: 26436836--26438672 Score: 2847
Period size: 991 Copynumber: 1.9 Consensus size: 991
26436826 CTTAGACCGG
* * **
26436836 GGATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCTGTACCAATGCCATTTT
1 GGATCGAACGGGTGGTAGGTGGGTTCAAGCACATATTCATATTTCTACCATACCAATGCCATTTT
26436901 TATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGCTTCGTGGCAAGACGACC
66 TATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGCTTCGTGGCAAGACGACC
* * * *
26436966 CGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTTTAGA
131 CGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACAGTTCAAGATGTTTTAAAATTTTTTTAGA
* *
26437031 AAAAGTTTTGTCCCCAAATTTGGTAGAGGTGATCCTTGTATTTTTATTGGTATGCACAAAAACAT
196 AAAAGTTTTGTCCCCAAATTTGGTAAAGGTGATCCTTGTATTTTTATTGGTATGCACAAAAAAAT
* * *
26437096 TCAACAAAAAACTCGAAGTGGAGAAGATTTTGTGACCGTTTGAAAAAAAGTGTCCTCATTTCAGA
261 TCAACAAAAAACACGAAGTGGAGAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGA
*
26437161 CACTTTAATGGCTGCTGGCAACAAACCTATAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTC
326 CACTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTC
**
26437226 TCAAGGTTTGATGAGGGATGGGGGCCAATTTAAGGGCCAAGTACCAGCACCCATCGCACATCATG
391 TCAAGGTTTGATGAGGGATGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * ***
26437291 TGCACACACCCCCCGACCCCCAATCGTCGAAACCCCTAATGCTGTTAGTTAAGCTCTCTGGCAAT
456 TGCACACACCCCCCGACCCCCAATCGTCGAAACCCCTAATCCTGCTAGTTAAGCTCTCCAACAAT
* * *
26437356 GCTCCGGCGATGCTACGGCGATGGTGCCCCGAGTGAAAAAAATGTGGAACCAGCACATGCCCGAG
521 GCTCCGGCGATGCTACGACGATGGTGCCCCAAGTGAAAAAAATGCGGAACCAGCACATGCCCGAG
*
26437421 CCCAGCATGTGCACCGTGGCTCAAAATCTTAGATTGGGAATGAGCTCCGTATGCTTAGACATGGA
586 CCCAGCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACATGGA
** * *
26437486 AAGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGG
651 AAGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGCGCTCAACCGATCGGAGAGG
* * * * * * *
26437551 CAGAATGCACAAGCCGGGGATCGACCCGAT-CCCCCCTGTGTGCTGTCGATCCTACTACCGTAGC
716 CAAAATGCACAAGCCGAGGATCGACCCGATCCCCCCCTGCGTGCTGTCAATCCTACTACAGCAAC
* * * *
26437615 CCTCGGTCCGGTCCGATCTTAGACCGGGAATAAACTCTATATGCATAAGTCAACCCACGAAACGA
781 CCTCGGTCCGATCCAATCTTAGACCGAGAATAAACTCCATATGCATAAGTCAACCCACGAAACGA
26437680 GCGTGCGGGGATCGATCCGATTCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGGA
846 GCGTGCGGGGATCGATCCGATTCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGGA
26437745 TGAACTTTGTATACCTAAGTCAACTCACGAAACGAGCGTGCGGACGCTCAACCGACTAGAGAGGC
911 TGAACTTTGTATACCTAAGTCAACTCACGAAACGAGCGTGCGGACGCTCAACCGACTAGAGAGGC
26437810 AGGATGCATAAGTCGA
976 AGGATGCATAAGTCGA
* * * *
26437826 GGATCGAATGGGTGGTAGGTGTGTTCAGGCACATATTCATATTTCTACCATGCCAATGCCATTTT
1 GGATCGAACGGGTGGTAGGTGGGTTCAAGCACATATTCATATTTCTACCATACCAATGCCATTTT
* * *
26437891 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGTAGTTTCGTGGCCAAGACGAC
66 TATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGCTTCGTGG-CAAGACGAC
* * *
26437956 CTGTTTT-TATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATGTTTTAAAATTTTTTTAG
130 CCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACAGTTCAAGATGTTTTAAAATTTTTTTAG
* *
26438020 AAAGAGTTTTGTCCCCAAATTTGGTAAAGGTGATCCTTGTATTTTTGTTGGCT-TGCACAAAAAA
195 AAAAAGTTTTGTCCCCAAATTTGGTAAAGGTGATCCTTGTATTTTTATTGG-TATGCACAAAAAA
* *
26438084 ATTCAGCTAAAAACACGAAGTGGAGAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCA
259 ATTCAACAAAAAACACGAAGTGGAGAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCA
* * * *
26438148 GACACTTTAGTGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
324 GACACTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCATTAAGGGGGTGTGAGT
*
26438213 TCTCGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATC
389 TCTCAAGGTTTGATGAGGGAT-GGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATC
*** * * * *
26438278 ATGTGTGTACACCCCCCGGCCCCCCAATCGTCGGAACCCCTAATCCTGCTGGTTAGGCTCTCCAA
453 ATGTGCACACACCCCCC-GACCCCCAATCGTCGAAACCCCTAATCCTGCTAGTTAAGCTCTCCAA
* * * * *
26438343 CGATGCTCTGGCGATGCTCCGACGATGGTTCCCCAAGTGAAAAAAATGCGGCACCAGCACATGCC
517 CAATGCTCCGGCGATGCTACGACGATGGTGCCCCAAGTGAAAAAAATGCGGAACCAGCACATGCC
*
26438408 CGAGCCCAGCCTGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACA
582 CGAGCCCAGCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACA
* *
26438473 TGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGCGCTCAACCGGTCGGA
647 TGGAAAGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGCGCTCAACCGATCGGA
* * * *
26438538 GAGGCAAAATGCATAAGTCGAGGATCG-CCCGATCCCCCCCTGCGTGCTGTCAATCCTGCTGCAG
712 GAGGCAAAATGCACAAGCCGAGGATCGACCCGATCCCCCCCTGCGTGCTGTCAATCCTACTACAG
* * * * *
26438602 CAACCCTCGGTCCGATCCAATCTTAGACTGAGAATGAACTCCGTATTCATAAGTCAACCCATGAA
777 CAACCCTCGGTCCGATCCAATCTTAGACCGAGAATAAACTCCATATGCATAAGTCAACCCACGAA
*
26438667 ATGAGC
842 ACGAGC
26438673 CTACGGGCAT
Statistics
Matches: 758, Mismatches: 84, Indels: 9
0.89 0.10 0.01
Matches are distributed among these distances:
989 99 0.13
990 319 0.42
991 340 0.45
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (991 bp):
GGATCGAACGGGTGGTAGGTGGGTTCAAGCACATATTCATATTTCTACCATACCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGCTTCGTGGCAAGACGACC
CGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACAGTTCAAGATGTTTTAAAATTTTTTTAGA
AAAAGTTTTGTCCCCAAATTTGGTAAAGGTGATCCTTGTATTTTTATTGGTATGCACAAAAAAAT
TCAACAAAAAACACGAAGTGGAGAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCATTAAGGGGGTGTGAGTTC
TCAAGGTTTGATGAGGGATGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCACACACCCCCCGACCCCCAATCGTCGAAACCCCTAATCCTGCTAGTTAAGCTCTCCAACAAT
GCTCCGGCGATGCTACGACGATGGTGCCCCAAGTGAAAAAAATGCGGAACCAGCACATGCCCGAG
CCCAGCATGTGCACCGTGGCTCAAAATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACATGGA
AAGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGCGCTCAACCGATCGGAGAGG
CAAAATGCACAAGCCGAGGATCGACCCGATCCCCCCCTGCGTGCTGTCAATCCTACTACAGCAAC
CCTCGGTCCGATCCAATCTTAGACCGAGAATAAACTCCATATGCATAAGTCAACCCACGAAACGA
GCGTGCGGGGATCGATCCGATTCGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGGA
TGAACTTTGTATACCTAAGTCAACTCACGAAACGAGCGTGCGGACGCTCAACCGACTAGAGAGGC
AGGATGCATAAGTCGA
Found at i:26439348 original size:26 final size:26
Alignment explanation
Indices: 26439307--26439359 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26439297 CCGATCCAAT
26439307 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
26439333 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
26439359 C
1 C
26439360 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:26439897 original size:159 final size:158
Alignment explanation
Indices: 26439718--26440086 Score: 429
Period size: 158 Copynumber: 2.3 Consensus size: 158
26439708 CTCAATCGGC
* * *
26439718 CGAAGAGGCAGAATGCGCAAGCTGGGGATCGACCTAG-TCCCTCCCTGCGTGCTGTCGA-TCTTG
1 CGAAGAGGCAGAATGCGCAAGCCGGGGATCGACC-AGATCCC-CCCTACGTGCTGCCGATTC-TG
* ** * * *
26439781 CTGCCGTAACCCTCTGTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCAT-AGGTCAAC
63 CTACCCCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCATCA-GTCAAC
26439845 CCACGAAATGAGCGTACGGGCGCTGAGCCAAT
127 CCACGAAATGAGCGTACGGGCGCTGAGCCAAT
* * ** * * *
26439877 CGGAGAGGTAGAATGCGCAAGCCAAGGATCGGCCCGATCCCCCCTACGTGTTGCCGATTCTGCTA
1 CGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGATCCCCCCTACGTGCTGCCGATTCTGCTA
* * *
26439942 CCCCAACTCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATCAGTCAACCCTC
66 CCCCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCATCAGTCAACCCAC
* * * **
26440007 GAAATGAGTGTGCGGGTGCTGAGCCGGT
131 GAAATGAGCGTACGGGCGCTGAGCCAAT
* * *
26440035 CGAAGAGGCATAATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGC
1 CGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGATCCCCC-CTACGTGC
26440087 CTACCGGTCC
Statistics
Matches: 173, Mismatches: 33, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
158 131 0.76
159 42 0.24
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
CGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGATCCCCCCTACGTGCTGCCGATTCTGCTA
CCCCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCATCAGTCAACCCAC
GAAATGAGCGTACGGGCGCTGAGCCAAT
Found at i:26440301 original size:26 final size:26
Alignment explanation
Indices: 26440272--26440324 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26440262 CTGGTCCGAT
*
26440272 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
26440298 CTTAGACTGGGGACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
26440324 C
1 C
26440325 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:26441259 original size:158 final size:159
Alignment explanation
Indices: 26440624--26441274 Score: 591
Period size: 158 Copynumber: 4.1 Consensus size: 159
26440614 CTTAGACATT
* * * * * *
26440624 GAATGTACTCTGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAACCGATCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGACCGGAGA
* * * * * * * * * *
26440689 GGCAGAATGTGTAAGTCGGGGATCGACCTGG-TCCCTCATTGCGTGCTGTCGATCTTGCTATCGC
66 GGCAAAATGCGCAAGTCGGGGATCGGCCCGGTTCCC-CACTACGTGCTGCCGATCCTGCTACCGC
26440753 AACCCTCGGTCCGATCCGATCTTAGACTGG
130 AACCCTCGGTCCGATCCGATCTTAGACTGG
* * ** * *
26440783 GAATGAACT-TGTATGCATAAGTTAACCCACGAAATGAGCATGCGGGCGCTGAGCCAACCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGACCGGAGA
* * * * * * * * * *
26440847 GG-TAGATGCACAAGCCGGGGATCAGCCCGG-TCCCCCCTACGTGTTGTCGATCCTACTACCCCA
66 GGCAAAATGCGCAAGTCGGGGATCGGCCCGGTTCCCCACTACGTGCTGCCGATCCTGCTACCGCA
* * * * *
26440910 ACTCTCAGTCTGGTACGATCTTAGACTGG
131 ACCCTCGGTCCGATCCGATCTTAGACTGG
* * * * * ** **
26440939 GAATGGACTCCGTATGCATAAGTCAACCCACGAAATGAGCATGCGGGCACTGAGCCGGTCAAAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGACCGGAGA
* * * * * * * *
26441004 GGCATAATGCGCAAGTCGGGGATCGG-TCGGGTCCCCTCTACGTGCTACCGATCCAGCTGCCACA
66 GGCAAAATGCGCAAGTCGGGGATCGGCCCGGTTCCCCACTACGTGCTGCCGATCCTGCTACCGCA
** *
26441068 ACCCTCGGTCCGACTGGGGATC--AGACAT-T
131 ACCCTCGGTCCGA-T-CCGATCTTAGAC-TGG
* * * * * * *
26441097 GAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGTCGACCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGACCGGAGA
* * *
26441162 GGCAAAATGTGCAAGTCGGGGATCGGCCCGGTTCCCC-CTGCGTGCTGCCGATCCTGCTGCCGCA
66 GGCAAAATGCGCAAGTCGGGGATCGGCCCGGTTCCCCACTACGTGCTGCCGATCCTGCTACCGCA
*
26441226 ACCCTCGGTCCGATCCAATCTTAGACTGG
131 ACCCTCGGTCCGATCCGATCTTAGACTGG
26441255 GAATGAACTCCGTATGCCTA
1 GAATGAACTCCGTATGCCTA
26441275 GACTGGGGAT
Statistics
Matches: 388, Mismatches: 94, Indels: 21
0.77 0.19 0.04
Matches are distributed among these distances:
156 56 0.14
157 76 0.20
158 234 0.60
159 18 0.05
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGACCGGAGA
GGCAAAATGCGCAAGTCGGGGATCGGCCCGGTTCCCCACTACGTGCTGCCGATCCTGCTACCGCA
ACCCTCGGTCCGATCCGATCTTAGACTGG
Found at i:26441276 original size:26 final size:26
Alignment explanation
Indices: 26441247--26441300 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
26441237 GATCCAATCT
26441247 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
26441273 TAGACTGGGGATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
26441299 TA
1 TA
26441301 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:26442706 original size:159 final size:157
Alignment explanation
Indices: 26442348--26442841 Score: 526
Period size: 159 Copynumber: 3.1 Consensus size: 157
26442338 AGCTCCGTAT
* * *
26442348 GCTTGGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
* * * * * * * *
26442413 CTGGCCGGAGAGGCAGAAGGTGCAAGCCGGGGATCGACCCAAT-CCCCCTGCGTGCTATCGATCC
66 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
* * * *
26442477 TGCTACCGTAACCCTCAGTCTAGTCTGA
131 TGCTGCCGCAACCCTCAGTC-CGACTGA
* * * * *
26442505 TCTTAGAC-TGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCA
* * * * * * *
26442569 GCCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCAAT
65 GCCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGTCAAT
* * * *
26442634 CCCGCTGCCACAACCCTCGGTCCGACTGGG
129 CCTGCTGCCGCAACCCTCAGTCCGACT-GA
* * *
26442664 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAAAGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
* * * * *
26442729 CCGACCGGAGAGGTAAAATACGTAAGCCGGGGATCAGCCCGATCCCCCCTGCGTGCTGTCAATCC
66 CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
* * *
26442794 TGCTGCTGCAACCCTCAGTCCGGTCTAA
131 TGCTGCCGCAACCCTCAGTCC-GACTGA
*
26442822 TCTTAGAC-TGGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
26442842 TTGTATGCAT
Statistics
Matches: 272, Mismatches: 58, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
156 2 0.01
157 88 0.32
158 56 0.21
159 124 0.46
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCAATCC
TGCTGCCGCAACCCTCAGTCCGACTGA
Found at i:26450150 original size:159 final size:157
Alignment explanation
Indices: 26449796--26450223 Score: 438
Period size: 159 Copynumber: 2.7 Consensus size: 157
26449786 AGCTCTATAT
* * * *
26449796 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCGATGAAATGACCGTGCAGGC-GCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAATCCAACCCATGAAATAAGCGTGC-GGCTGCTCA
* ** *
26449860 GTCGACCGGAGAGGCAAAATGCGCAAGCC-GGAGTCAACCTGATCCCCCCCTGTATGCTTCGATC
65 GTCGGCCGGAGAGGCAAAATGCGCAAGCCGGGA-TCGGCCCGATCCCCCCCTGTATGCTTCGATC
*
26449924 CTGCTGCCGCAACCCTCGGTCTGGTCCGA
129 CTGCTGCCACAACCCTCGGTCTGGTCCGA
* * * * * *
26449953 TCTTAAAC-TGGGAATGAACTCCATATACATAAGT-CAACCCATGAAACAAGCGTGCGGCTGCTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAA-TCCAACCCATGAAATAAGCGTGCGGCTGCTC
* * * * * * *
26450016 AGTCGGTCGAAGAGGTATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGTGTG-TTGCCG
64 AGTCGGCCGGAGAGGCAAAATGCGCAAGCC-GGGATCGGCCCGATCCCCCCCTGTATGCTT--CG
* * *
26450080 ATCCTGCTGCCACAACCTTCGGTCTGG-CTGGG
126 ATCCTGCTGCCACAACCCTCGGTCTGGTC-CGA
* * * *
26450112 GCTTAGACATGGAATGAGCTCCCTATGCCTAATCCAACCCATGAAATAGGCGTGCCGG-TGCACA
1 GCTTAGACATGGAATGAACTCCATATGCCTAATCCAACCCATGAAATAAGCGTG-CGGCTGCTCA
* *
26450176 GTCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGATCCCC
65 GTCGGCCGGAGAGGCAAAATGCGCAAGC-CGGGATCGGCCCGATCCCC
26450224 TCTACGTGCT
Statistics
Matches: 218, Mismatches: 41, Indels: 22
0.78 0.15 0.08
Matches are distributed among these distances:
156 4 0.02
157 73 0.33
158 19 0.09
159 118 0.54
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAATCCAACCCATGAAATAAGCGTGCGGCTGCTCAG
TCGGCCGGAGAGGCAAAATGCGCAAGCCGGGATCGGCCCGATCCCCCCCTGTATGCTTCGATCCT
GCTGCCACAACCCTCGGTCTGGTCCGA
Found at i:26450307 original size:26 final size:26
Alignment explanation
Indices: 26450271--26450323 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26450261 TCAGTCCAAT
26450271 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26450297 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26450323 C
1 C
26450324 CTATCCCACG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26451365 original size:26 final size:26
Alignment explanation
Indices: 26451336--26451386 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
26451326 GGCTCAAAAT
* *
26451336 CTTAGAC-TGGGAATGAGCTCTGTATC
1 CTTAGACAT-GGAATGAACTCCGTATC
26451362 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
26451387 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATC
Found at i:26451717 original size:159 final size:157
Alignment explanation
Indices: 26451362--26451786 Score: 414
Period size: 159 Copynumber: 2.7 Consensus size: 157
26451352 GCTCTGTATC
26451362 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCGAC
1 CTTAGACATGGAATGAACTCCGTATG-CTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCGAC
* * * * **
26451427 CGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCTT
65 CGACCGAAGAGGCAGAATGCGCAAGTCCAGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCC
* * * * *
26451492 GTTGCCATAACCCTCGATTCGATCTGAT
130 GCTGCCACAACCCTCGATTCCAACTGAG
* * *
26451520 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATTAGCGTGCGGGCGCT-GA
1 CTTAGACAT-GGAATGAACTCCGTATGC-TAAGCCAACCCACGAAATGAGCATGCGGGCGCTCGA
* * * * *
26451583 GCCGACTGAAGAGGCATAATGCGCAA-TCCAGGGATCGGCCCGGTCCACCTCTGCGTGCTGCC-A
64 -CCGACCGAAGAGGCAGAATGCGCAAGTCCA-GGATCGACCCGATCC-CCCCTGCGTGCTGCCGA
*
26451646 GTCCCGCTGCCACAACCCTCGA-TCCAACTGGGG
126 -TCCCGCTGCCACAACCCTCGATTCCAACT-GAG
* * * * * **
26451679 CTTAGACATGGAATGAGCTCCTTATGTCGAAGCCAACCCATGAAACTG-GCATGCGGCCG-TTTA
1 CTTAGACATGGAATGAACTCCGTATG-CTAAGCCAACCCACGAAA-TGAGCATGCGGGCGCTCGA
* * * * *
26451742 GTCGATCGGAGAGGCAGAATGCGTAAGTCGAGGATCGACCCGATC
64 -CCGACCGAAGAGGCAGAATGCGCAAGTCCAGGATCGACCCGATC
26451787 TCCATTGCGT
Statistics
Matches: 217, Mismatches: 38, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
157 7 0.03
158 95 0.44
159 109 0.50
160 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCGACC
GACCGAAGAGGCAGAATGCGCAAGTCCAGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCCG
CTGCCACAACCCTCGATTCCAACTGAG
Found at i:26452233 original size:26 final size:26
Alignment explanation
Indices: 26452192--26452244 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26452182 TCGGTCCAAT
*
26452192 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26452218 CTTAGACT-GGAGATGAACTCCATATG
1 CTTAGACTGGGA-ATGAACTCCATATG
26452244 C
1 C
26452245 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26453816 original size:26 final size:26
Alignment explanation
Indices: 26453787--26453837 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26453777 GGCTCAAAAT
*
26453787 CTTAGAC-TGGGAATGAGCTCCGTATA
1 CTTAGACAT-GGAATGAACTCCGTATA
26453813 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
26453838 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATA
Found at i:26454000 original size:26 final size:26
Alignment explanation
Indices: 26453971--26454022 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26453961 CGGTCCGATA
*
26453971 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCATATGC
* *
26453997 TTAGACTGGGGATGAACTCCATATGC
1 TTAGACTAGGAATGAACTCCATATGC
26454023 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGC
Found at i:26454723 original size:26 final size:26
Alignment explanation
Indices: 26454694--26454746 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26454684 GGCTCAAAAT
*
26454694 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
26454720 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26454746 C
1 C
26454747 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26455305 original size:494 final size:495
Alignment explanation
Indices: 26454375--26455320 Score: 1432
Period size: 494 Copynumber: 1.9 Consensus size: 495
26454365 AAAGTGGAGA
* *
26454375 AGATTTTGTGACAGTTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAA
1 AGATTTTGTGACAGTTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAA
* * *
26454440 CGTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCAAGGTTTGATGAAGGATAGGGGC
66 CCTATAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTATCAAGGTTCGATGAAGGATAGGGGC
* *
26454505 CCAATATAAGCGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCACGGCCCCCCCA
131 CCAATATAAGCGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACACCCCACAGCCCCCCCA
* **
26454570 ATCGTCAGAATCCCCAATGCCTCCGGTTAGGCTCTCCGACGATGCTCCGGTGATGGTGCCCTGGG
196 ATCGTCAGAATCCCCAATGCCACCGGTTAGGCTCTCCGACGATGCTCCGACGATGGTGCCCTGGG
* * * * *
26454635 CAAAAAAAATGTGGCACCAGCATATGCCCGAGCCGAGCATGTGCACCGTGGCTCAAAATCTTAGA
261 CAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAACATGTGCACCGTGGCTCAAAATCTTAGA
* *
26454700 CTGGGAATGAGCTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
326 CTGGGAATGAGCTCCGCATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * **
26454765 CAAGCGTGCGGGCGCTCAGCCGACCGGAGAGGAAGAATGTGCAAGCCGGGGATCGACCCGGTGCC
391 CAAGCGTACGGGCGCTCAGCCGACCGGAGAGGAAGAATGCGCAAGCCAAGGATCGACCCGGTGCC
26454830 CCCCTATGTGCTATCGATCCTATTGCCACAATTCGATCTT
456 CCCCTATGTGCTATCGATCCTATTGCCACAATTCGATCTT
* *
26454870 AGATTTTGTGATC-GTTTGCAAAAAGTTTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAA
1 AGATTTTGTGA-CAGTTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAA
* * *
26454934 ACCTATAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGACGGATAGGGG
65 ACCTATAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTATCAAGGTTCGATGAAGGATAGGGG
* * * *
26454999 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGTGCACACCCCCCAG-CCCCCC
130 CCCAATATAAGCGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACACCCCACAGCCCCCCC
** **
26455063 AATCGTTGGAA-CCTCCAATGCCACCGGTTAGGCTCTCCGGTGATGCTCCGACGATGGTG-CCTC
195 AATCGTCAGAATCC-CCAATGCCACCGGTTAGGCTCTCCGACGATGCTCCGACGATGGTGCCCT-
* * *
26455126 GGGCGAAAAAAATGCGACACCAGCACATGCCTGAGCCCAACATGTGCATCGTGGCTCAAAATCTT
258 GGGCAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAACATGTGCACCGTGGCTCAAAATCTT
* * *
26455191 AGATTGGGAATGAGCTCCGCATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCACCCCATG
323 AGACTGGGAATGAGCTCCGCATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * ** *
26455256 AAACGAGCGTACGGGCGTTCAGCCGGTCGGAGAGGTAGAATGCGCAAGCCAAGGATCGACCCGGT
388 AAACAAGCGTACGGGCGCTCAGCCGACCGGAGAGGAAGAATGCGCAAGCCAAGGATCGACCCGGT
26455321 CCACCCCGTC
Statistics
Matches: 403, Mismatches: 45, Indels: 7
0.89 0.10 0.02
Matches are distributed among these distances:
493 5 0.01
494 228 0.57
495 169 0.42
496 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.21
Consensus pattern (495 bp):
AGATTTTGTGACAGTTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAA
CCTATAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTATCAAGGTTCGATGAAGGATAGGGGC
CCAATATAAGCGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACACCCCACAGCCCCCCCA
ATCGTCAGAATCCCCAATGCCACCGGTTAGGCTCTCCGACGATGCTCCGACGATGGTGCCCTGGG
CAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAACATGTGCACCGTGGCTCAAAATCTTAGA
CTGGGAATGAGCTCCGCATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
CAAGCGTACGGGCGCTCAGCCGACCGGAGAGGAAGAATGCGCAAGCCAAGGATCGACCCGGTGCC
CCCCTATGTGCTATCGATCCTATTGCCACAATTCGATCTT
Found at i:26457302 original size:26 final size:26
Alignment explanation
Indices: 26457261--26457313 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26457251 CTGGTTCGAT
*
26457261 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26457287 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26457313 C
1 C
26457314 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26457657 original size:26 final size:26
Alignment explanation
Indices: 26457628--26457680 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26457618 CCGGTTCGAT
26457628 CTTAGACTG-GGAAAGAACTCCGTATG
1 CTTAGACTGAGG-AAGAACTCCGTATG
* *
26457654 CTTAGACTGAGGATGAACTCTGTATG
1 CTTAGACTGAGGAAGAACTCCGTATG
26457680 C
1 C
26457681 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGAAGAACTCCGTATG
Found at i:26457765 original size:367 final size:354
Alignment explanation
Indices: 26457076--26458087 Score: 1143
Period size: 367 Copynumber: 2.8 Consensus size: 354
26457066 CTCGGTCCCC
* * * *
26457076 CTGCCACAACCCTCAGTCCAACTGGGGCTTAGACGTGGAATG-AGATCCCTATGCCTAAGCCAAC
1 CTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAAC
*
26457140 CCATGAAACG-GACGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG
65 CCATGAAACGAG-CGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATACGCAAGCCGGGGATCGG
* * * * * ** * * *
26457204 CCCGATCCCCCTTACGTGCTACCAATCCTACTGTCGCAACCCTCGGTCTGGTTCGATCTTAGACT
129 CCCGGTCCCCC-TGCATGCTGCCGAT-CTTGTGCCGCAACCCTCGATCCGGTTCGATCTTAGACT
* *
26457269 TGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
192 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* *
26457334 AGTGTGCGGGCACTCAACCGACCAGAGAGGCCGATCGGAGAGGCATAATCCATAAGCTGGGGATC
257 AGTGTGCGGGCGCTCAACCGACCAGAGAGGCCGATCGGAGAGGCATAATCCACAAGCTGGGGATC
* * *
26457399 AACCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGGTCCTG
322 AACCCAGTCCCCCTCT--G-GC--T--A--CT-C--CCGATCCTG
* * * * *
26457444 CTGCCATAACCCTCGGTCCAGCGGGGGCATAGACGTGGAATGTACTCCGTATGCCTATGCCAATC
1 CTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
* * * * ** *
26457509 CATGAAACGAGCGTGCAGGCACTCAGTCGGCCGGAGAAACAGAATACGCAAGCCGGGGATCAGCC
66 CATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCC
* * *
26457574 TGGTCCCCCTGCTTGCTGCCGATCTTGTAGCCGCAACCCTTGATCCGGTTCGATCTTAGACTGGG
131 CGGTCCCCCTGCATGCTGCCGATCTTGT-GCCGCAACCCTCGATCCGGTTCGATCTTAGACTGGG
* * * *
26457639 AAAGAACTCCGTATGCTTAGACTGAGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGC
195 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGT
* ** * * * * * *
26457704 GTGCGGGCGCTTAGTCGGCTAGAGAGGCTG-GCTGGAGAGGCATAATGCGCAAG-TCGGGGATCA
260 GTGCGGGCGCTCAACCGACCAGAGAGGCCGATC-GGAGAGGCATAATCCACAAGCT-GGGGATCA
*
26457767 GCCCAGTCCCCCTCTGGCTACTCCCGATCCTG
323 ACCCAGTCCCCCTCTGGCTACTCCCGATCCTG
* *
26457799 CTGCCACAACCCTCGATCC-GATTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
1 CTGCCACAACCCTCGGTCCAG-CTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
* * * * ** * * * *
26457863 CCACGAAACGAGCATACGGGCGCTTAGCCAATCGGAGAGGTAAAATACGCAAACCGGGGATTGGC
65 CCATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATACGCAAGCCGGGGATCGGC
* * * * * *
26457928 CCGGCCCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCATCGATCCGATCCGATCTTAGACTG
130 CCGG-TCCCCCTGCATGCTGCCGATCTTG-TGCCGCAACCCTCGATCCGGTTCGATCTTAGACTG
*
26457993 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGA
193 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* *
26458058 GTGTACGGGCGCTCAGCCGACCAGAGAGGC
258 GTGTGCGGGCGCTCAACCGACCAGAGAGGC
26458088 AGGATGCGCA
Statistics
Matches: 543, Mismatches: 93, Indels: 28
0.82 0.14 0.04
Matches are distributed among these distances:
354 1 0.00
355 113 0.21
356 135 0.25
357 2 0.00
358 2 0.00
360 1 0.00
362 1 0.00
364 2 0.00
365 1 0.00
366 5 0.01
367 162 0.30
368 116 0.21
369 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (354 bp):
CTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
CATGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCC
CGGTCCCCCTGCATGCTGCCGATCTTGTGCCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTG
TGCGGGCGCTCAACCGACCAGAGAGGCCGATCGGAGAGGCATAATCCACAAGCTGGGGATCAACC
CAGTCCCCCTCTGGCTACTCCCGATCCTG
Found at i:26458013 original size:26 final size:26
Alignment explanation
Indices: 26457984--26458036 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26457974 CCGATCCGAT
*
26457984 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26458010 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
26458036 C
1 C
26458037 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26459145 original size:159 final size:158
Alignment explanation
Indices: 26458742--26459145 Score: 392
Period size: 159 Copynumber: 2.5 Consensus size: 158
26458732 AGCTCCGTAT
* * * *
26458742 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACTAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGTCAAACCACAAAACGAGCGTGCGGGCGCTCAG
** ** *
26458807 CCGGTCGGAGACACAGAATGTGCAAGATGGGGATCGACCCGATCCCCCCGTATGTGCTGTCAATC
66 CCGGTCGGAGAGGCAGAATGCACAAGATGGGGATCGACCCGATCCCCCCGCA-GTGCTGTCAATC
*
26458872 CTACTACCCTAACCCTCGGTCTAGTCTGA
130 CTACTACCCTAACCCTCGGTCCAGTCTGA
* * * * * *
26458901 TCTTAGA-TTGGGAATGAACTCTCTATGCATAAGTCAAACCACGAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCATAAGTCAAACCACAAAACGAGCGTGCGGGCGCTCA
* * * * * *
26458965 GCCGGCCGAAGAGGTATAATGCACAAG-TCGGGGATTGGCCC-AGTCCCCCTCTGCA-TGCTGTC
65 GCCGGTCGGAGAGGCAGAATGCACAAGAT-GGGGATCGACCCGA-TCCCCC-C-GCAGTGCTGTC
* *
26459027 AGTTCC-ACTACCAC-AACCCTCGGTCCAG-CTGGG
126 A-ATCCTACTACC-CTAACCCTCGGTCCAGTCT-GA
* * * * * *
26459060 GCTTAGACATGGAATGAGCTCCCTATGCTTACA-TCAACCCACAAAACGGGTGTGCGGGCCCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCATA-AGTCAAACCACAAAACGAGCGTGCGGGCGCTCA
26459124 GCCGGTCGGAGAGGCAGAATGC
65 GCCGGTCGGAGAGGCAGAATGC
26459146 GCAACCCGGG
Statistics
Matches: 196, Mismatches: 39, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
158 5 0.03
159 182 0.93
160 7 0.04
161 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCATAAGTCAAACCACAAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCACAAGATGGGGATCGACCCGATCCCCCCGCAGTGCTGTCAATCC
TACTACCCTAACCCTCGGTCCAGTCTGA
Found at i:26459248 original size:26 final size:26
Alignment explanation
Indices: 26459219--26459268 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26459209 CCGGTTCGAT
26459219 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
26459245 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGAAATGAACTCCGTA
26459269 CGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:26459627 original size:26 final size:26
Alignment explanation
Indices: 26459587--26459638 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26459577 CGGTCTGATT
26459587 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
26459613 TTAGACTGGCG-ATGAACTCCGTATGC
1 TTAGACTGG-GAATGAACTCCGTATGC
26459639 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:26459867 original size:367 final size:366
Alignment explanation
Indices: 26459034--26459872 Score: 1074
Period size: 367 Copynumber: 2.3 Consensus size: 366
26459024 GTCAGTTCCA
* ** *
26459034 CTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATG-AGCTCCCTATGCTTACA-TCAA
1 CTACCACAACCCTCGGTCCA-CTGGGGCTTAGACGTGGAATGTA-CTCTATATGCCTA-AGTCAA
** * * * *
26459097 CCCACAAAACGGGTGTGCGGGCCCTCAGCCGGTCGGAGAGGCAGAATGCGCAACCCGGGGATCGG
63 CCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAACCCGGGGATCGG
** * *
26459162 CTTGGTCCCCCCTGCGCGCTATCGATCCTGCTACCGCAACCCTCGATCCGGTTCGATCTTAGACT
128 CCCGATCCCCCCTACGCGCTATCGATCCTGCTACCGCAACCCTCGATCCGGTTCGATCTTAGACT
* *
26459227 GGAAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCACGAAATG
193 GGAAATGAACTCCGTATGCTTAGACTGGCGATGAACTCCGTACGCCTAAGTCAACCCACGAAACG
* * * * ** *
26459292 AGCATGCGGGCGCTCGGCCGACCCGAGAGGCCGGTCGAAAAGGCATAAAGTGCAAGCTGGGGATC
258 AGCATACGGGCACTCAGCCGACCAGAGAGGCCAATCGAAAAGGCATAAAGGGCAAGCTGGGGATC
* * *
26459357 AGCCAGGTCCCTCTCTGCGTGCTACCGAACTGCTGCCAGTCCTG
323 AGCCAGATCCCTCTCTGCATGCTACCGAACCGCTGCCAGTCCTG
* * * *
26459401 CTGCCACAACCGTCAGTCCAACTGGGGCTTAGACGTGGAATGTACTCTATATGCCTAAGCCAACC
1 CTACCACAACCCTCGGTCC-ACTGGGGCTTAGACGTGGAATGTACTCTATATGCCTAAGTCAACC
* ** *** * *
26459466 CATGAAACGAACGTGCGGGTGCTCAATTGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCC
65 CATGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAACCCGGGGATCGGCC
* * * * * * *
26459531 CGATCCCCCTTATGTGCTGTCGATCCTGCTACTGCAACCCTCGATTCGG-TCTGATTTTAGACTG
130 CGATCCCCCCTACGCGCTATCGATCCTGCTACCGCAACCCTCGATCCGGTTC-GATCTTAGACTG
* *
26459595 GGAATGAACTCCGTATGCTTAGACTGGCGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
194 GAAATGAACTCCGTATGCTTAGACTGGCGATGAACTCCGTACGCCTAAGTCAACCCACGAAACGA
* * * *
26459660 GCATACGGGCACTCAGCCGACCAGAGAGGCCAATCGAAGAGGCATAATGGGTAAGTTGGGGATCA
259 GCATACGGGCACTCAGCCGACCAGAGAGGCCAATCGAAAAGGCATAAAGGGCAAGCTGGGGATCA
* * *
26459725 GCCCGATCCCTCTCTGCATGCTGCCGATCCCGCTGCCAGTCCTG
324 GCCAGATCCCTCTCTGCATGCTACCGA-ACCGCTGCCAGTCCTG
* *
26459769 CTACCACAACCCTTGGTCCGACTGGGGCTTAGACGTGGAGTGTACTCTATATGCCTAAGTCAACC
1 CTACCACAACCCTCGGTCC-ACTGGGGCTTAGACGTGGAATGTACTCTATATGCCTAAGTCAACC
*
26459834 CATGAAACGAGCATGC-GGCACTCAGCCGGCCGGAGAGGC
65 CATGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGC
26459873 CAGTCAGAGA
Statistics
Matches: 399, Mismatches: 68, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
366 3 0.01
367 308 0.77
368 88 0.22
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (366 bp):
CTACCACAACCCTCGGTCCACTGGGGCTTAGACGTGGAATGTACTCTATATGCCTAAGTCAACCC
ATGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCAGAATGCGCAACCCGGGGATCGGCCC
GATCCCCCCTACGCGCTATCGATCCTGCTACCGCAACCCTCGATCCGGTTCGATCTTAGACTGGA
AATGAACTCCGTATGCTTAGACTGGCGATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGC
ATACGGGCACTCAGCCGACCAGAGAGGCCAATCGAAAAGGCATAAAGGGCAAGCTGGGGATCAGC
CAGATCCCTCTCTGCATGCTACCGAACCGCTGCCAGTCCTG
Found at i:26459932 original size:183 final size:184
Alignment explanation
Indices: 26459634--26460056 Score: 514
Period size: 183 Copynumber: 2.3 Consensus size: 184
26459624 ATGAACTCCG
* * * *
26459634 TATGCCTAAGTCAACCCACGAAACGAGCATACGGGCACTCAGCCGACCAGAGAGGCCAATCGAAG
1 TATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCACTCAGCCGGCCGGAGAGGCCAATCGAAG
** * ** * *
26459699 AGGCATAATGGGTAAGTTGGGGATCAGCCCGATCCCTCTCTGCATGCTGCCGATCCCGCTGCC-A
66 AGGCATAATACGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTGCCAATCCCGCTGCCGA
* *
26459763 GTCCTGCTACCACAACCCTTGGTCCGACTGGGGCTTAGACGTGGAGTGTACTCTA
131 -TCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCTA
* *
26459818 TATGCCTAAGTCAACCCATGAAACGAGCATGC-GGCACTCAGCCGGCCGGAGAGGCCAGTC-AGA
1 TATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCACTCAGCCGGCCGGAGAGGCCAATCGA-A
* *
26459881 GAGGCATAATACGCAAGCCGAGGG-TCAGCCC-AGTCCCCCTCTGCGTGCTGCCAATCCCGCTGT
65 GAGGCATAATACGCAAGCCG-GGGATCAGCCCGA-TCCCCCTCTGCATGCTGCCAATCCCGCTGC
* * * *
26459944 CGATCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGATGTGGAATGTACTCTG
128 CGATCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCTA
* ** * *** *
26460001 TATGGCTAAAACAACCCACGAAATGAATGTGCAGGCACTCAGCCGGTCGGAGAGGC
1 TATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCACTCAGCCGGCCGGAGAGGC
26460057 AGAATGCGCA
Statistics
Matches: 205, Mismatches: 29, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
182 2 0.01
183 147 0.72
184 56 0.27
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (184 bp):
TATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCACTCAGCCGGCCGGAGAGGCCAATCGAAG
AGGCATAATACGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCATGCTGCCAATCCCGCTGCCGA
TCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCTA
Found at i:26461218 original size:158 final size:158
Alignment explanation
Indices: 26460896--26461259 Score: 360
Period size: 158 Copynumber: 2.3 Consensus size: 158
26460886 AGCTCCGTAT
* * *
26460896 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
* * * * ** *
26460961 TCGATCGGAGAGGCAGAATACGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCT
66 CCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTCCCGATCC
* *
26461026 TGCTGTCACAACCCTCGGTCCGGTCCCA
131 TGCTGCCACAACCCTCGGTCCAGTCCCA
* * *
26461054 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* * * * * * * *
26461118 GCCGGCCGAAGAGGCATAATGCGTAGGCCGGGGATCAACCCGGTCCCCCGTTGCGTGCTCCC-AG
65 ACCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCAACCCGATCCCCC-CTGCGTGCTCCCGA-
***
26461182 TACCT-CTGCCACAACCCTCGGTCCAG-CTGG
128 T-CCTGCTGCCACAACCCTCGGTCCAGTCCCA
* ** * * *
26461212 GGTTAGACATGGAATGAGTTCCCG-ACGCCTAAGCTAACCCACGAAACG
1 GCTTAGACATGGAATGAACT-CCGTATGCATAAGCCAACCCACGAAACG
26461260 GGCATGCGGG
Statistics
Matches: 166, Mismatches: 34, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.01
158 130 0.78
159 33 0.20
160 2 0.01
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCACTCAA
CCGACCGAAGAGGCAGAATACGCAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTCCCGATCC
TGCTGCCACAACCCTCGGTCCAGTCCCA
Found at i:26461768 original size:26 final size:26
Alignment explanation
Indices: 26461739--26461791 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26461729 CCGGTCTGAT
26461739 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26461765 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26461791 C
1 C
26461792 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26462867 original size:138 final size:138
Alignment explanation
Indices: 26462645--26462895 Score: 353
Period size: 138 Copynumber: 1.8 Consensus size: 138
26462635 CTGGTCCGAT
* * * *
26462645 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* *
26462710 CGGTCGAAGAGGCATAATGCGCAAGTC-GAGGATCGGCCCGGTCCCCCTGCCACAACCCTCGGTC
66 CGGTCGAAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCCGGTCCCCCTGCCACAACCCTCGGTC
26462774 CGACTGGGG
130 CGACTGGGG
* * * * *
26462783 CTTAGACAT-GGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* *
26462847 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCT
65 CCGGTCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCT
26462896 CTGTGTGCTG
Statistics
Matches: 98, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
138 96 0.98
139 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.31, T:0.16
Consensus pattern (138 bp):
CTTAGACTGGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CGGTCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTGCCACAACCCTCGGTCC
GACTGGGG
Found at i:26463066 original size:171 final size:171
Alignment explanation
Indices: 26462756--26463066 Score: 374
Period size: 171 Copynumber: 1.8 Consensus size: 171
26462746 CCCGGTCCCC
* *
26462756 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTCCGACTGGGGCATAGACATGGAATGAGCTCCCTACGCCTAAGCCAACC
* * * * ** * * * *
26462821 CATGAAACGGGTGTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCC
66 CATGAAACGAGCGTGCAGGCACTCAGCCGGCCGGAGAAACAGAATACACAAACCAGGGATCGACC
* *
26462886 TGGTCCCCCTCTGTGTGCTGTCGATCCCGCTGCTGGTCCTG
131 CGATCCCCCTCTGTGTGCTGTCGATCCCGCTGCTGGTCCTG
* * **
26462927 CTGCCATAACCCTCGGTCCGGCTGGGGCATAGACATGGAATGTA-CTCTGTACGCCTAAGCCAAC
1 CTGCCACAACCCTCGGTCCGACTGGGGCATAGACATGGAATG-AGCTCCCTACGCCTAAGCCAAC
** * * * *
26462991 CCATGAAACGAGCGTGCAGGTGCTTAGTCGGCCGGAGAAACAGAATACATAAA-CTGAGGATCGA
65 CCATGAAACGAGCGTGCAGGCACTCAGCCGGCCGGAGAAACAGAATACACAAACCAG-GGATCGA
26463055 CCCGATCCCCCT
129 CCCGATCCCCCT
26463067 GCATGCTGTC
Statistics
Matches: 114, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
170 2 0.02
171 111 0.97
172 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (171 bp):
CTGCCACAACCCTCGGTCCGACTGGGGCATAGACATGGAATGAGCTCCCTACGCCTAAGCCAACC
CATGAAACGAGCGTGCAGGCACTCAGCCGGCCGGAGAAACAGAATACACAAACCAGGGATCGACC
CGATCCCCCTCTGTGTGCTGTCGATCCCGCTGCTGGTCCTG
Found at i:26463140 original size:26 final size:26
Alignment explanation
Indices: 26463111--26463161 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26463101 CCGATCTGAT
26463111 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
26463137 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAAAGAACTCCGTAT
26463162 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:26463503 original size:26 final size:26
Alignment explanation
Indices: 26463467--26463517 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
26463457 CTGATCTGAT
26463467 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
26463493 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
26463518 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:26464220 original size:26 final size:26
Alignment explanation
Indices: 26464191--26464243 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26464181 GGCTCAAAAT
*
26464191 CTTAGAC-TGGGAATGAGCTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
26464217 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
26464243 C
1 C
26464244 CTAACCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:26464459 original size:158 final size:155
Alignment explanation
Indices: 26464226--26464717 Score: 481
Period size: 158 Copynumber: 3.1 Consensus size: 155
26464216 GCTTAGACAT
* * * * **
26464226 GGAATGAACTCCGTATGCCTAACCCAACCCACGAAACGAGCGTGTGGGCGCTCAGCTGGTCGAAG
1 GGAATGAACTCCGTATGCCTAA-GCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAG
* * * *
26464291 AGGCAGAATGCGCAAGTCGGGGATCGACCTGGTCCCCCCTGTGTGCTGTAGAACCTGCTACGGTA
65 AGGCAGAATGCGCAAG-CGGGGATCGACCTGGTCCCCCCTGCGTGCTGT-GATCCTGCTACCGCA
* * *
26464356 ACCCTTGGTCCGGTCTGATCTTAAATTG
128 ACCCTCGGTCTGGTCTGATCTTAAAATG
* *
26464384 GGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAG
* * * * * * *
26464449 AGGCATAATGCGCAAGCTGGGATCGA-CTCGATCCCCCTCTGCGTGTTGTCGATCCCGCTGCCAC
65 AGGCAGAATGCGCAAGCGGGGATCGACCT-GGTCCCCC-CTGCGTGCTGT-GATCCTGCTACCGC
* **
26464513 AATCCTCGGTCTGGT-TGGGGCTTAGAAAT-
127 AACCCTCGGTCTGGTCT-GATCTTA-AAATG
* * * * *
26464542 GGAATGAGCTCCCTATGCCTAAGCGAACCCATGAAACG-GACGTGCGGGTGCTCAGTCGACCGGA
1 GGAATGAACTCCGTATGCCTAAGC-AACCCATGAAACGAG-CGTGCGGGCGCTCAGCCGACCGAA
* * * *
26464606 GAGGTAGAATGCGCAAGCCGGGGATCGGCCCTGG-CCCCCCTACCTGCTGCTGATCCTGCTACCG
64 GAGGCAGAATGCGCAAG-CGGGGATC-GACCTGGTCCCCCCTGCGTGCTG-TGATCCTGCTACCG
* * * *
26464670 CAACCCTCGATCTGGTCCGATCTTAGACTG
126 CAACCCTCGGTCTGGTCTGATCTTAAAATG
26464700 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
26464718 TTAGACTAGG
Statistics
Matches: 268, Mismatches: 53, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
156 2 0.01
157 21 0.08
158 225 0.84
159 16 0.06
160 2 0.01
161 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (155 bp):
GGAATGAACTCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGA
GGCAGAATGCGCAAGCGGGGATCGACCTGGTCCCCCCTGCGTGCTGTGATCCTGCTACCGCAACC
CTCGGTCTGGTCTGATCTTAAAATG
Found at i:26464720 original size:26 final size:26
Alignment explanation
Indices: 26464691--26464743 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26464681 CTGGTCCGAT
26464691 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
26464717 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
26464743 C
1 C
26464744 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:26467688 original size:158 final size:159
Alignment explanation
Indices: 26467351--26467808 Score: 380
Period size: 158 Copynumber: 2.9 Consensus size: 159
26467341 AAATCTTAGA
* *
26467351 CTGAGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCGAA-CCATGAAATGAGCATGCAGGC
1 CTGAGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCC-AACCCACGAAATGAGCATGCAGGC
* * * * * *
26467415 ATTCAGTCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCTGGTCCCCCCTGCGTGTTGT
65 ACTAAGTCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGC
** *
26467480 CGATCCTGCTACCACAACCTTCGATCCGGT
130 CGATCCCACTACCACAACCTTCGATCCAGT
* * * * * *
26467510 CTGA-TCTTAG--ATCGAAAATGAACTCTGTACGCATAAGTCAACCCACGAAATGAGCGA-GCGG
1 CTGAGGCTTAGACAT-G-GAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGC-ATGCAG
* * *
26467571 GCGCTAAG-CTGGTCGGAGAGGCA-AATGTGTAAGCCGGGGATCGACCCGATCCCCCTCTGCGTG
63 GCACTAAGTC-GGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCC-CTGCGTG
* *
26467634 CTGCC-AGTCCCACTGCCACAACCCTT-GGTCCAG-
126 CTGCCGA-TCCCACTACCACAA-CCTTCGATCCAGT
* ** * *** * *
26467667 CTGAGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAACGAATGTGCGGGCG
1 CTGAGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCA
* * * * * * * * **
26467732 CTCAA-CCGGCCAGAAAGGCAGAATGCGTAAGTCAGGGATCGGCCTGATCCCCCCTGCGTTCTAT
66 CT-AAGTCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGC
*
26467796 CGATCCTACTACC
130 CGATCCCACTACC
26467809 GTAACTCTCA
Statistics
Matches: 236, Mismatches: 47, Indels: 33
0.75 0.15 0.10
Matches are distributed among these distances:
156 2 0.01
157 37 0.16
158 154 0.65
159 41 0.17
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
CTGAGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCA
CTAAGTCGGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTGCC
GATCCCACTACCACAACCTTCGATCCAGT
Found at i:26467860 original size:26 final size:26
Alignment explanation
Indices: 26467831--26467883 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26467821 CTGAATCAAT
*
26467831 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
26467857 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
26467883 C
1 C
26467884 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:26468230 original size:26 final size:26
Alignment explanation
Indices: 26468185--26468262 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
26468175 CCCATCTGAT
26468185 CTTAGACTGGA-ATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
*
26468210 CTTAGACTGAAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
26468236 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
26468262 C
1 C
26468263 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 10 0.20
26 40 0.80
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:26471012 original size:159 final size:159
Alignment explanation
Indices: 26470716--26471354 Score: 455
Period size: 159 Copynumber: 3.9 Consensus size: 159
26470706 AGCTTTGTAT
* * * * * *
26470716 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGGCAACCCAAGAAACGAGCATGCAGGCGCTCAG
* * * * * * * * *
26470781 CC-GACTGGACAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCCTACGTGCTGTCGAT
66 CCAG-CCGAAGAGACATAATGCACAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGAT
**
26470845 CCTACTGCCACAACCCTCGATCCAGTCT-GA
130 CCCGCTGCCACAACCCTCGATCCAG-CTAGA
* * ** * * *
26470875 TCTTAGAC-TGGGAATTAACTCTGTATGCATAAGGCAACCCAAGAAATGAGTATGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCATAAGGCAACCCAAGAAACGAGCATGCAGGCGCTCA
* * * * * * * * *
26470939 GCCGGTCGAAGAGGCATCATGCACAAGTCGGGGATCGGCCTGATCCCCCTCTGTGTGCTGCCGGT
65 GCCAGCCGAAGAGACATAATGCACAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGAT
* *
26471004 CCCGCTGCCACAACCCTCGGTCCAGCTAGG
130 CCCGCTGCCACAACCCTCGATCCAGCTAGA
* * * ** *
26471034 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGTCAACCCATTAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGGCAACCCAAGAAACGAGCATGCAGGCGCTCAG
* * * *
26471099 CCAGCCGGAGAGACATAATGCGCAAGTCGGGGATCAACCCGATCCCCCTCTGCCTGCTGTCGATC
66 CCAGCCGAAGAGACATAATGCACAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGA--
* * *
26471164 CCGCTACCAGTCCTGCTGCCACAACCCTCGGTCCAGCTGGG
129 ----T--C---CC-GCTGCCACAACCCTCGATCCAGCTAGA
* * * * * * * * *
26471205 GCTTAGACATGGAATGTACTCCGTATACCTAAGCCAACCCAGGAAATGAGCGTGC-GAGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCATAAGGCAACCCAAGAAACGAGCATGCAG-GCGCTCA
* * * * * * *
26471269 GCCGGCC-AGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGGT-CCCCT-TAGTGTGCTGTCG
65 GCCAGCCGA-AGAGACATAATGCACAAGTCGGGGATCGACCCGATCCCCCTCT-GCGTGCTGTCG
* * **
26471331 ATCCTGCTACCGTAACCCTCGATC
128 ATCCCGCTGCCACAACCCTCGATC
26471355 TGGTCTGATC
Statistics
Matches: 381, Mismatches: 80, Indels: 39
0.76 0.16 0.08
Matches are distributed among these distances:
158 18 0.05
159 223 0.59
160 2 0.01
162 1 0.00
164 1 0.00
165 1 0.00
167 1 0.00
169 1 0.00
170 18 0.05
171 115 0.30
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCATAAGGCAACCCAAGAAACGAGCATGCAGGCGCTCAG
CCAGCCGAAGAGACATAATGCACAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATC
CCGCTGCCACAACCCTCGATCCAGCTAGA
Found at i:26471292 original size:171 final size:170
Alignment explanation
Indices: 26471002--26471341 Score: 452
Period size: 171 Copynumber: 2.0 Consensus size: 170
26470992 TGTGCTGCCG
*
26471002 GTCCCGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAG
1 GTCCCGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAGCTCCCTATACCTAAG
* ** * * * *
26471067 TCAACCCATTAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGACATAATGCGCAAGTCGGGGA
66 CCAACCCAGGAAACGAGCGTGCAGGCACTCAGCCAGCCAGAGAGACAGAATGCGCAAGTCGAGGA
26471132 TCAACCCGATCCCCCTCT-GCCTGCTGTCGATCCCGCTACCA
131 TCAACCCGAT-CCCCT-TAGCCTGCTGTCGATCCCGCTACCA
* * *
26471173 GTCCTGCTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGTA-CTCCGTATACCTAA
1 GTCCCGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATG-AGCTCCCTATACCTAA
* * *
26471237 GCCAACCCAGGAAATGAGCGTGC-GAGCACTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGAG
65 GCCAACCCAGGAAACGAGCGTGCAG-GCACTCAGCCAGCCAGAGAGACAGAATGCGCAAGTCGAG
* * ** *
26471301 GATCGACCCGGTCCCCTTAGTGTGCTGTCGATCCTGCTACC
129 GATCAACCCGATCCCCTTAGCCTGCTGTCGATCCCGCTACC
26471342 GTAACCCTCG
Statistics
Matches: 147, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
169 1 0.01
170 25 0.17
171 120 0.82
172 1 0.01
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.18
Consensus pattern (170 bp):
GTCCCGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAGCTCCCTATACCTAAG
CCAACCCAGGAAACGAGCGTGCAGGCACTCAGCCAGCCAGAGAGACAGAATGCGCAAGTCGAGGA
TCAACCCGATCCCCTTAGCCTGCTGTCGATCCCGCTACCA
Found at i:26472404 original size:158 final size:158
Alignment explanation
Indices: 26472113--26472556 Score: 378
Period size: 158 Copynumber: 2.8 Consensus size: 158
26472103 CTCCGTATGC
* * * * * * ** *
26472113 TTAGACATGGAATGAACTCCGTATGCCTAAACCAAACCACAAAACAAGCGCCCGAGTGCTCAGTC
1 TTAGACATGGAATGAACTCCCTACGCATAAGCCAACCCACAAAACAGGCGTACGGGTGCTCAG-C
* ** * * * * * * *
26472178 GGTTCG-ACAGGTAGAATGCGCAAGTCGGGGACCGACCCGGTCCCCCCAACGTGCTGTCGATCCT
65 CGACCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCCC
** * *
26472242 GCTGCCGTAACCCTC-GATCTGGTCCGATC-
130 GCTGCCACAACCCTCAG-TCTAG-CCGAGCA
* * * * * *
26472271 TTAGAC-TAGGAATTAACTCCGTACGCATAAGTCAACCCACAAAACCA-GCGTGCGGGTGTTGAG
1 TTAGACAT-GGAATGAACTCCCTACGCATAAGCCAACCCACAAAA-CAGGCGTACGGGTGCTCAG
* * *
26472334 CCGACCGAAGAGGCATAATGCGCAAGTCAGGGATCGACCCGGTCCCCCCTATATGCTG-CTGGTC
64 CCGACCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCCTACATGCTGTC-GATC
* *
26472398 CCGCTGCCACAACCCTCAGTCTAGCTGGGCA
128 CCGCTGCCACAACCCTCAGTCTAGCCGAGCA
* * *
26472429 TTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACAAAACAGGCGTACGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCCTACGCATAAGCCAACCCACAAAACAGGCGTACGGGTGCTCAGCC
* * * * * * * * *
26472494 GGCCGGAGAGGCAGAATGTGTAAGCCAGGGATTGGCCCGGTCCCCCCTGCATGCTGTCTATCC
66 GACCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCC
26472557 TGCTATCGCA
Statistics
Matches: 226, Mismatches: 51, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 11 0.05
158 210 0.93
159 5 0.02
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCCTACGCATAAGCCAACCCACAAAACAGGCGTACGGGTGCTCAGCC
GACCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCCTACATGCTGTCGATCCCG
CTGCCACAACCCTCAGTCTAGCCGAGCA
Found at i:26472616 original size:26 final size:26
Alignment explanation
Indices: 26472587--26472638 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
26472577 CGGTATGATA
*
26472587 TTAGACTCGGAATGAACTCCATATGC
1 TTAGACTCGGAATGAACACCATATGC
* * *
26472613 TTAGACTGGGGATGAACACCGTATGC
1 TTAGACTCGGAATGAACACCATATGC
26472639 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
TTAGACTCGGAATGAACACCATATGC
Found at i:26472972 original size:26 final size:26
Alignment explanation
Indices: 26472943--26472993 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
26472933 GATCTGGTTA
26472943 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
26472969 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
26472994 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:26473325 original size:26 final size:26
Alignment explanation
Indices: 26473296--26473348 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26473286 CCAGTCTGGT
26473296 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
26473322 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
26473348 C
1 C
26473349 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:26473399 original size:355 final size:352
Alignment explanation
Indices: 26472497--26473420 Score: 1129
Period size: 355 Copynumber: 2.6 Consensus size: 352
26472487 CTCAGCCGGC
* * * *
26472497 CGGAGAGGCAGAATG-TGTAAGCCAGGGATTGGCCCGGTCCCCCCTGCATGCTGTCT-ATCCTGC
1 CGGAGAGGCAGAATGAT-CAAGCCGGGGATTGGCCCGGTCCTCCCTGCGTGCTG-CTGATCCTGC
* * * * *
26472560 TATCGCAACTCTCGATCCGGTATGATATTAGACTCGGAATGAACTCCATATGCTTAGACTGGGGA
64 TACCGCAACCCTCGATCC-GTCTGGT-TTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGA
* * * * *
26472625 TGAACACCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGTCGGCCGGAGAGGC
127 TGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGC
* *
26472690 ATAATGCGCAAGCCAGGGG-TCAGCCCGATCCCCCTCTGCGCGCTGCCAATCCTGCTACCGGTCT
192 ATAATGCGCAAGCC-GGGGATCAGCCCGATCCCCCTCTGCGCGCTGCCAATCCCGCTACCGGTCC
*
26472754 TGCTGCCACAACCCTCAGTCCGCCTAGGGCTTAGATGTGGAACGTACTCCGTATACCTAAGCCAA
256 TGCTGCCACAACCCTCAGTCCGCCTAGGGCTTAGATGTGGAACGTACTCCGTATACCCAAGCCAA
* * * *
26472819 CCCATGGAACGAGCTTCCTGGCACTCAGCCAA
321 CCCATGAAACGAGCATCCGGGCACTCAACCAA
* * * ** * *
26472851 CTGGAGAGGCAAAATGCA-CAAGCCGGGGATCGGTCCGACCCTCCCTGCGTGCTGTTGATCATGC
1 C-GGAGAGGCAGAATG-ATCAAGCCGGGGATTGGCCCGGTCCTCCCTGCGTGCTGCTGATCCTGC
* *
26472915 TACCGCAACCCTCGATCCGATCTGGTTATAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGA
64 TACCGCAACCCTCGATCCG-TCTGGTT-TAGACTAGGAATGAACTCCATATGCTTAGACTGGGGA
** * *
26472980 TGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGTTCAGCCGGCTGGAGAGGC
127 TGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGC
* * * * ** ***
26473045 ATAATGCGCAAGCCGGGGATTAGCCCGATCCCCCTTTGTGTGCTGCTGATCCCGCTGTTGGTCCT
192 ATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGCGCTGCCAATCCCGCTACCGGTCCT
* * * * ** *
26473110 GCTGCCACAACCTTCGGTCCAG-CTGGGGCTTAGATGTGGAATGTACTTTGTATGCCCAAGCCAA
257 GCTGCCACAACCCTCAGTCC-GCCTAGGGCTTAGATGTGGAACGTACTCCGTATACCCAAGCCAA
* *
26473174 CCCATGAAACGAGCATGCGGGCACTCAACCAGT
321 CCCATGAAACGAGCATCCGGGCACTCAACCA-A
*
26473207 CGGAGAGGCAGAATGATCAAGCCGGGGATTGGCCCGGTCCTCCTTGCGTGCTGCTGATCCTGCTA
1 CGGAGAGGCAGAATGATCAAGCCGGGGATTGGCCCGGTCCTCCCTGCGTGCTGCTGATCCTGCTA
*
26473272 CCGTAACCCTCGATCCAGTCTGGTCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATG
66 CCGCAACCCTCGATCC-GTCTGGT-TTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATG
* * ** * *
26473337 AACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCAACCAACTAGAGAGGCAG
129 AACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGCAT
* * *
26473402 GATACGCAAGCCAGGGATC
194 AATGCGCAAGCCGGGGATC
26473421 GAACGAGTGG
Statistics
Matches: 482, Mismatches: 76, Indels: 23
0.83 0.13 0.04
Matches are distributed among these distances:
354 9 0.02
355 469 0.97
356 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (352 bp):
CGGAGAGGCAGAATGATCAAGCCGGGGATTGGCCCGGTCCTCCCTGCGTGCTGCTGATCCTGCTA
CCGCAACCCTCGATCCGTCTGGTTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAA
CTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCGGCTGGAGAGGCATAA
TGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGCGCTGCCAATCCCGCTACCGGTCCTGCTG
CCACAACCCTCAGTCCGCCTAGGGCTTAGATGTGGAACGTACTCCGTATACCCAAGCCAACCCAT
GAAACGAGCATCCGGGCACTCAACCAA
Found at i:26474544 original size:157 final size:157
Alignment explanation
Indices: 26474054--26474544 Score: 456
Period size: 158 Copynumber: 3.1 Consensus size: 157
26474044 GCTTAGTCAT
* * * *
26474054 GGAATGAACTTCGTATGCCTAAGCCAACCCACGGAACGAGCGTACGGGCGCTCAGTC-AGCCAGA
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGA-TCAGA
* ** * ** * * * * *
26474118 GAGGCAGAATGCGAAAGCCATGGATCGACTCGATCCCCCCTGCATGCCGTCGATCTTGCTGCTGC
65 GAGGCAG-ATGCGCAAGCCGGGGATCGACCCGAT-CCCCCTGTGTACTGTCGATCCTGCTACCGC
26474183 AACCATCGGTCCAGT-TCGATCTTAGACTG
128 AACCATCGGTCCAGTCTCGATCTTAGACTG
* * * * * * * * *
26474212 GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGTGTGCGGGCACTGAGCCGGTCTA-A
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGATC-AGA
* * * * *
26474276 GAGGCATAATGCGCAAGCTGGGGATCGACCCG-TCCCCCTCTACGTACTGTCGATCCCGCTACCA
65 GAGGCA-GATGCGCAAGCCGGGGATCGACCCGATCCCCCTGT--GTACTGTCGATCCTGCTACCG
* * * * **
26474340 CAACCATCTGTTC-GGCTGGGGCTTAGACAT-
127 CAACCATCGGTCCAGTCTCGATCTTAGAC-TG
* * * * *
26474370 GGAATGAGCTCCCTATGCCTAAGCCTACCCACGAAACGAGCGTACGAGCGCTCAGTCGATCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGATCAGAG
* *
26474435 AGGCAGATGTGCAAGCCGGGGATCGACCCGATCCGTCCTGTGTACTGTCGATCCTGCTACCGCAA
66 AGGCAGATGCGCAAGCCGGGGATCGACCCGATCC-CCCTGTGTACTGTCGATCCTGCTACCGCAA
*
26474500 CCCTCGGTCCAGTCT-GATCTTAGACTG
130 CCATCGGTCCAGTCTCGATCTTAGACTG
*
26474527 GGAAAGAACTCCATATGC
1 GGAATGAACTCCATATGC
26474545 TTAGACTGGG
Statistics
Matches: 259, Mismatches: 62, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
156 7 0.03
157 76 0.29
158 170 0.66
159 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGATCAGAG
AGGCAGATGCGCAAGCCGGGGATCGACCCGATCCCCCTGTGTACTGTCGATCCTGCTACCGCAAC
CATCGGTCCAGTCTCGATCTTAGACTG
Found at i:26474927 original size:26 final size:26
Alignment explanation
Indices: 26474886--26474935 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26474876 CTTGTTCGAT
26474886 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
26474912 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGAGAATGAACTCCGTA
26474936 CGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:26475214 original size:355 final size:357
Alignment explanation
Indices: 26474333--26475289 Score: 959
Period size: 355 Copynumber: 2.7 Consensus size: 357
26474323 TGTCGATCCC
* * * ** * * *
26474333 GCTACCACAACCATCTGTTCGGCTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCTA
1 GCTACCACAACCCTCAGTCCGATTGGGGCTTAGACGTGGAATGTA-CTCCGTATGCCTAAGCCAA
* ** *
26474397 CCCACGAAACGAGCGTACGAGCGCTCAG-TCGATCGGAGAGGCAG-ATGTGCAAGCCGGGGATCG
65 CCCACGAAACGAGCGTACGGGCGCTCAGCT-GGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
* ** * * * *
26474460 ACCCGATCCGTCCTGTGTACTGTCGATCCTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGAC
129 -CTCGATCCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGAT-CAGTCTGATCTTAGAC
* * * *
26474525 TGGGAAAGAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACAGAAC
192 T-GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCACAGAAC
* * * *
26474590 GAGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCCGACCGAAGAGGCATAACGCACAAGCCGTGGAT
256 GAACGTACGGGCGCTCA---GACC-G-GA-GCCG--CGAAGAGGCATAACGCACAAGCCGGGGAT
* * ** * *
26474655 CAACCCGGTCTCCCACTGTGTGCTATCGATCCCGCTGCTGGTCTT
313 CAACACGATCTCCCACTACGTGCTATCGATCCCGCTGCCGGTCCT
* * *
26474700 GCTGCCACAACCCTCAGTCCGATTGGGGCTTAGACGTGGAATGTACTCTGTATGCCTAACCCAAC
1 GCTACCACAACCCTCAGTCCGATTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
* * * * ** * ** *
26474765 CCATGAAATGAGCGTATGGGCGCTCAACCAGCTGGAGAGGCAGAATGCGCTTGCCGGGGATCGGT
66 CCACGAAACGAGCGTACGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGCT
* * * *
26474830 CCGGTCCTCCCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGATCTTGT-TCGATCTTAGACT
131 -CGATCCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATC-AGTCT-GATCTTAGACT
* *
26474894 GAGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCTAC-GAAAT
193 G-GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCACAG-AAC
* * * * *
26474958 GAACGTACGGGTGCTCA-ACC-GA-CCG-GAA-AGGCATAATGCGCAAGTCGGGGATCAGCACGA
256 GAACGTACGGGCGCTCAGACCGGAGCCGCGAAGAGGCATAACGCACAAGCCGGGGATCAACACGA
* * *
26475018 TC-CCCTTCTACGTGCTTTCGATCCTGCTGCCGGTCCT
321 TCTCCC-ACTACGTGCTATCGATCCCGCTGCCGGTCCT
*
26475055 GCTACCACAACCCTC-GATCCGATTGGGGCTTAGACGTGGAATGTACTCCGTCTGCCTAAGCCAA
1 GCTACCACAACCCTCAG-TCCGATTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAA
* * * **
26475119 ACCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCAG
65 CCCACGAAACGAGCGTACGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATC-G
* * ** *
26475184 CTCGATCCCCCCTACGTGCTGCCAATCCTGCTGTCGTAACCCTCGATCCCA-TCTGATCTTAGAC
129 CTCGATCCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGAT--CAGTCTGATCTTAGAC
**
26475248 TGGAATGAACTCCGTATGCTTAGACTGAAGATGAACTCCGTA
192 TGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTA
26475290 TGCTTAGACT
Statistics
Matches: 487, Mismatches: 89, Indels: 41
0.79 0.14 0.07
Matches are distributed among these distances:
354 42 0.09
355 208 0.43
356 6 0.01
357 1 0.00
359 3 0.01
361 2 0.00
364 2 0.00
367 88 0.18
368 135 0.28
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (357 bp):
GCTACCACAACCCTCAGTCCGATTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTACGGGCGCTCAGCTGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGCT
CGATCCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATCAGTCTGATCTTAGACTGGA
ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTACGCCTAAGTCAACCCACAGAACGAACG
TACGGGCGCTCAGACCGGAGCCGCGAAGAGGCATAACGCACAAGCCGGGGATCAACACGATCTCC
CACTACGTGCTATCGATCCCGCTGCCGGTCCT
Found at i:26475286 original size:26 final size:26
Alignment explanation
Indices: 26475241--26475318 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
26475231 CCCATCTGAT
26475241 CTTAGACTGGA-ATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
*
26475266 CTTAGACTGAAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
26475292 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
26475318 C
1 C
26475319 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 10 0.20
26 40 0.80
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:26475669 original size:26 final size:26
Alignment explanation
Indices: 26475633--26475685 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26475623 CCGGTTCGAT
26475633 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
26475659 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
26475685 C
1 C
26475686 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:26477894 original size:158 final size:156
Alignment explanation
Indices: 26477446--26477936 Score: 465
Period size: 158 Copynumber: 3.1 Consensus size: 156
26477436 GCTCCGTATG
* *
26477446 CTTAGACATGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GCGTGCGGGCGCTCAGC
* ** * * * * *
26477511 CGGCTTGAGAGGCAGAATGTGCAAGCCGGGGTCGACCCGATCCCCCCTACGTGCTATCGATCCTG
65 CAGCCGGAGAGGCAGAATGTGCAAGCCGGGATCGGCCCGGTCCCCCTTACGTGCTGTCGATCCT-
* *
26477576 T-TGCCGCAACCTTCGGTCCGATCTGAT
129 TCTGCCACAACCTTCGGTCCGATCGGAT
* * ** * * * *
26477603 CTTAGACAGGGAATGAACTCCGTAAGTATAAGTCAACCCACGAAAC-GAGTGCGGGCACTGAG-C
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGCGTGCGGGCGCTCAGCC
* * * * * * * *
26477666 TGATCGAAGAGGCATAATGTGCAAGTCGGGGATCGGCCCGGT-CACCTCTACGTGCTGCCGGTCC
66 AG-CCGGAGAGGCAGAATGTGCAAG-CCGGGATCGGCCCGGTCCCCCT-TACGTGCTGTCGATCC
* * *
26477730 TGCTGCCACAACTTTCGGTCCAGGT-GGCA-
128 TTCTGCCACAACCTTCGGTCC-GATCGG-AT
* * * *
26477759 CTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAC-GGCGTGCGGGCGCTCAGC
* * *
26477824 CAGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGGCCGGTCCCCCTTGCGTGCTGTCGATCCT
65 CAGCCGGAGAGGCAGAATGTGCAAGCCG-GGATCGGCCCGGTCCCCCTTACGTGCTGTCGATCCT
* * * *
26477889 TCTGCCACAACCCTCGGTACGGTCCGAT
129 TCTGCCACAACCTTCGGTCCGATCGGAT
26477917 CTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
26477937 TTATGCTTAG
Statistics
Matches: 261, Mismatches: 59, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
154 2 0.01
155 33 0.13
156 81 0.31
157 49 0.19
158 90 0.34
159 6 0.02
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGCGTGCGGGCGCTCAGCC
AGCCGGAGAGGCAGAATGTGCAAGCCGGGATCGGCCCGGTCCCCCTTACGTGCTGTCGATCCTTC
TGCCACAACCTTCGGTCCGATCGGAT
Found at i:26477967 original size:26 final size:25
Alignment explanation
Indices: 26477917--26477968 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
26477907 ACGGTCCGAT
*
26477917 CTTAGACTGGGAATGAACTCTTATG
1 CTTAGACTGGGAATGAACTCGTATG
*
26477942 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACT-CGTATG
26477968 C
1 C
26477969 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:26479180 original size:12 final size:12
Alignment explanation
Indices: 26479163--26479194 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
26479153 TGAGGGATAG
26479163 AGGGCCAATATA
1 AGGGCCAATATA
26479175 AGGGCCAATATA
1 AGGGCCAATATA
26479187 AGGGCCAA
1 AGGGCCAA
26479195 GTACCAGCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.41, C:0.19, G:0.28, T:0.12
Consensus pattern (12 bp):
AGGGCCAATATA
Found at i:26481368 original size:158 final size:156
Alignment explanation
Indices: 26480995--26481390 Score: 419
Period size: 157 Copynumber: 2.5 Consensus size: 156
26480985 TGAGCTCCGT
* * *
26480995 ATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGGCCTC
1 ATGCTTAGACAT-GAATGAGCTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGGCCTC
* * *
26481060 AGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCAGTGTGCTTCAAGC
64 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCAGCGTGCTTCAAGC
* * * *
26481125 CTGCTGCCACAACCCTCGGTCTGGTCTG
129 CTACTGCCACAACCCTCAGTCTCGACTG
* * * *
26481153 AT-CTTAGACTATGAATGAGCTCCATATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCACTG
1 ATGCTTAGAC-ATGAATGAGCTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-CTC
* * * *
26481217 AGCCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCC-AGTCTGCCTCTA-CGTGCTGTC
64 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGA-TC--CCCCCAGCGTGCT-TC
* *
26481280 -AGTCTTATTGCCACAACCCT-AGTC-CGACTG
125 AAG-CCTACTGCCACAACCCTCAGTCTCGACTG
* * *
26481310 -TGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCT
1 AT-GCTTAGACAT-GAATGAGCTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC-CT
*
26481374 CAGCCGACCGGAGAGGC
63 CAGCCGGCCGGAGAGGC
26481391 CAGTCGGAGA
Statistics
Matches: 198, Mismatches: 30, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
156 6 0.03
157 93 0.47
158 79 0.40
159 20 0.10
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
ATGCTTAGACATGAATGAGCTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCAGCGTGCTTCAAGCCT
ACTGCCACAACCCTCAGTCTCGACTG
Found at i:26482765 original size:26 final size:26
Alignment explanation
Indices: 26482736--26482788 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26482726 CCGGTCCGAT
26482736 CTTAGACT-GGGAATGAACTCCGCATG
1 CTTAGACTAGGG-ATGAACTCCGCATG
*
26482762 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGCATG
26482788 C
1 C
26482789 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGCATG
Found at i:26483140 original size:26 final size:26
Alignment explanation
Indices: 26483104--26483156 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26483094 CCGATCCGAT
*
26483104 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26483130 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26483156 C
1 C
26483157 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26483156 original size:368 final size:368
Alignment explanation
Indices: 26482553--26484853 Score: 1883
Period size: 368 Copynumber: 6.3 Consensus size: 368
26482543 CCGATCTCAT
* * **
26482553 TGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACC
1 TGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGTA-CTCTGTATGCCTAAGCCAACC
* * * * * * * * *
26482617 CACGAAATGGGCGTGTGGGCGTTTAGCCGACCGAAGAGGCAGAATGTGCAAGCCGGGGATCGGCT
65 CACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCC
* * * * * *
26482682 CGAT-CCCCCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGG
130 CGATCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGG
* * *
26482746 GAATGAACTCCGCATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAG
195 GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * ** * **
26482811 CGTACGGGCACTCAGCTGGTTGGAGAGGCCAACCGGAGAGGCATAATGTGCAAGCCCAGGATCAA
260 CGTGCGGGCACTCAGCCGACTGGAGAGGCCAACCGGAGAGGCATAATGCGCAAGCCGGGGATCAA
* * *
26482876 TCCAGTCCCCCTCTGTGTGCTGCCAATCCTGCTACCGGTCCTGC
325 GCCAGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGGTCCTGC
* *
26482920 TACCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGTACTCTGCATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCC
* * * * * * *
26482985 ATGAAACGAGCGTGCGGGCACTCAGTCAATCGGAGAGGTAGAATGCACAAGCCGGGGATCGACCC
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCC
* *
26483050 GATCCCCCCTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCAATCCGATCCGATCTTAGACTGGG
131 GATCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGG
*
26483115 AATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
196 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * * * * *
26483180 ATGCGAGCGCTCAGCCAGCCT-GAGAGGCCGATCGGAGGGGCATAATGCACAAGTCGAGGATC-A
261 GTGCGGGCACTCAGCC-GACTGGAGAGGCCAACCGGAGAGGCATAATGCGCAAGCCGGGGATCAA
* ** * ** *
26483243 GCCCGATCGTCCTCTGCGTGCTGGCGATCCCACTACCGGTCTTGC
325 GCCAG-TCCCCCTCTGCGTGCTGCCGATCCTGCTACCGGTCCTGC
* * * *
26483288 TGCCATAACCCTCAGTCCAGCTAGGGCTTAAACATGGAATGTACTCCT-TATGCCTAAGCCAACC
1 TGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGTACT-CTGTATGCCTAAGCCAACC
* * * * * *
26483352 CACGAAACGAGCGTACGGGTGCTCAGCCGGCCAGAGAGGTAGAATGTGCAAGCCGGGGATCGGCT
65 CACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCC
* * * * * *
26483417 CGGTCCCCCC-GACATGCTACCGATCCTGCTGTCGCATCCCTCAATCCGGTCCGATCTTAGACTG
130 CGATCCCCCCTG-CGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTG
* *
26483481 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGA
194 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * * * **
26483546 ACGTGCGGGCGCTCAGCCAACTAGAGAGG-CAGGATGCGCATGCCAGGGATCGAATGAGTGGTAG
259 GCGTGCGGGCACTCAGCCGACTGGAGAGGCCA--A-CCGGA-G--AGGCAT--AAT--GCGCAAG
* ** * * * * * ** *
26483610 --GTGGGTTCAAGCACA-TCTTCATATTTC-TACCATGCCAATGCCATTTTTA-TGG-CCTGATC
314 CCG-GGGATCAAGC-CAGTCCCCCT-CTGCGT-GC-TGCCGAT-CC--TGCTACCGGTCCTG--C
** * * * * * * ** *
26483669 CCCCTCTACGTGCTGTCGGTCCGGCT-GTTGCTTAGACATGTATTG-AGCTCCCTATGCCGAAGC
1 TGCCACAAC---C-CTCGGTCCGGCTAG-GGCTTAGACATGGAATGTA-CTCTGTATGCCTAAGC
* * ** * *
26483732 CAACCCACGAAATGAGCGTGCGAGCGCTCAGCCGGTCAGAGAGGTAGAATGCGCAAGCCGAGGAT
60 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGAT
* * * * ** * * * *
26483797 CGGCCTGGTCCCCCCTGCATGCTACCGATCCTATTATCGGAACCCTCGATCCGGTCTGATCTTAG
125 CGGCCCGATCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAG
*
26483862 ACTGGGAATGAACTCCGTATGCTTAGACTGTGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
190 ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * ** * *
26483927 ATGAGCGTGCAGGCACTCAACCGA-TCGGAG-GACCAGCTAGAGAGGCATAATGCACAAACCGGG
255 ACGAGCGTGCGGGCACTCAGCCGACT-GGAGAGGCCAACCGGAGAGGCATAATGCGCAAGCCGGG
* * * * * * * * * *
26483990 GAT-TAGCCCGAACCTCCTCTGCGCGTTGCCGATCCCGCTGCCAGTCTTGC
319 GATCAAGCCAG-TCCCCCTCTGCGTGCTGCCGATCCTGCTACCGGTCCTGC
* * *
26484040 TGCCACAACCCTCGGTCCGGTTGGGGCTTAGACGTGGAATGTACT-TCGTATGCCTAAGCCAACC
1 TGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGTACTCT-GTATGCCTAAGCCAACC
* * * * * * * * ** *
26484104 AACGAAATGGGCGTGCAGGTGCTCAGCCGATCGGAGAGGCAAAATATGCAA-CTCGGGGATTGGC
65 CACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGC-CGGGGATCGGC
* * * * * *
26484168 CC-AGTCCCTCCTGCGTGCTGTCGATCCTGCGGCCGTAA-CC-C--T-CGATCCGATCTTAGACA
129 CCGA-TCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACT
* *
26484227 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCTTATGCCTAAGTCAACCCATGAAACG
193 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
**** *
26484292 AGCGTGCGGGCACTCAGCCGACCT-GAGAGGCCGGTAGGAGAGGCATAATGTGCAAGCCGGGGAT
258 AGCGTGCGGGCACTCAGCCGA-CTGGAGAGGCCAACCGGAGAGGCATAATGCGCAAGCCGGGGAT
* * * * *
26484356 CAA-CCTAGTCCCCCTCTACGTGCTGTCGAT-CTCGTTGCTGGTCCTGC
322 CAAGCC-AGTCCCCCTCTGCGTGCTGCCGATCCT-GCTACCGGTCCTGC
** *
26484403 TGCCATGACCCTCGGTCCGGCTAGGGCTTAGGCATGGAATGTACT-TCGTATGCCTAAGCCAACC
1 TGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGTACTCT-GTATGCCTAAGCCAACC
* * * * ** *
26484467 C-CTGAAACGAGCGTGCGGCCGCTCAGTCGACCGGAGAGG-CGAAATGCGTAAGTTGGGGATCGA
65 CAC-GAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAG-AATGCGCAAGCCGGGGATCGG
** * ** * *
26484530 CCTAATCCCCCTTGCGT-CTATCGATCCTGCTGTCATAACCCTTGATCCGATCTGATCTTAGACT
128 CCCGATCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACT
** * *
26484594 GGGAATGAACTCCGTATGCTTAGACTAAGGATGAA-TGCCGTATGCCTAAGTAAACCCATGAAAC
193 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT-CCGTATGCCTAAGTCAACCCACGAAAC
* * * * ** *
26484658 GAGCATGTGGGCCCTCAGCTGA-TCGGAGAGGCCGGCTC-GAGAGGCATAATGCGTAAGCCGGGG
257 GAGCGTGCGGGCACTCAGCCGACT-GGAGAGGCCAAC-CGGAGAGGCATAATGCGCAAGCCGGGG
** * *
26484721 ATC-AGTCTGGTCCCCCACTGCGTGCTGTCGA---T-C--CC-G---T--
320 ATCAAG-CCAGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGGTCCTGC
* * * *
26484758 TGCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGCATGTACTCTGTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCC
* * *
26484823 ACGAAACGAGTGTGTGGGCACTCAGCCGACC
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGACC
26484854 AGACGGGCAG
Statistics
Matches: 1548, Mismatches: 313, Indels: 158
0.77 0.16 0.08
Matches are distributed among these distances:
355 80 0.05
356 2 0.00
357 1 0.00
360 1 0.00
361 1 0.00
362 116 0.07
363 171 0.11
364 4 0.00
365 3 0.00
366 6 0.00
367 378 0.24
368 443 0.29
369 5 0.00
370 3 0.00
371 8 0.01
372 1 0.00
373 9 0.01
374 7 0.00
375 11 0.01
376 18 0.01
377 13 0.01
378 6 0.00
379 10 0.01
380 2 0.00
381 8 0.01
382 1 0.00
384 6 0.00
385 233 0.15
386 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (368 bp):
TGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGTACTCTGTATGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCC
GATCCCCCCTGCGTGCTATCGATCCTGCTGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
GTGCGGGCACTCAGCCGACTGGAGAGGCCAACCGGAGAGGCATAATGCGCAAGCCGGGGATCAAG
CCAGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGGTCCTGC
Found at i:26483501 original size:26 final size:26
Alignment explanation
Indices: 26483472--26483524 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26483462 CCGGTCCGAT
26483472 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26483498 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26483524 C
1 C
26483525 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26483886 original size:26 final size:26
Alignment explanation
Indices: 26483857--26483909 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26483847 CCGGTCTGAT
26483857 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGTGG-ATGAACTCCGTATG
26483883 CTTAGACTGTGGATGAACTCCGTATG
1 CTTAGACTGTGGATGAACTCCGTATG
26483909 C
1 C
26483910 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGTGGATGAACTCCGTATG
Found at i:26484248 original size:26 final size:26
Alignment explanation
Indices: 26484219--26484271 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26484209 TCGATCCGAT
26484219 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* * *
26484245 CTTAGACTGGGGATGAACTCCTTATG
1 CTTAGACAGGGAATGAACTCCGTATG
26484271 C
1 C
26484272 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:26485793 original size:159 final size:159
Alignment explanation
Indices: 26485498--26485848 Score: 377
Period size: 159 Copynumber: 2.2 Consensus size: 159
26485488 GCTCCGTATG
*
26485498 CTTAGACATGGAATGAACTCCGTATGCGTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
* *
26485563 CGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCCAACATGCTGTCGATCC
66 CGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCCAACATGCTGCCGATCC
26485628 TGCTACCACAACCCTTAATCCGGTCTGAT
131 TGCTACCACAACCCTTAATCCGGTCTGAT
* * * * ** *
26485657 CTTAGAC-TGAGATTGAACTCCGTATGCATAAGTCAACCCATGAAACGAGTGTGCGGGCGTTGAG
1 CTTAGACATG-GAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
** * * * * * * ** * *
26485721 -CTGGTCGAAGAGGCATAATGCGTAAGCCGGGGATTGGCCCGATCCCCCTCTGCGTGCTGCCGGT
65 TC-GACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCCAACATGCTGCCGAT
* * **
26485785 CC-GACTACCACAACCCTTGATCTGG-CTCGGG
129 CCTG-CTACCACAACCCTTAATCCGGTCT-GAT
* * *
26485816 CTTAGACATGGAATGAGCTCCTTATGCCTAAGC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGC
26485849 TGGGGAGGCA
Statistics
Matches: 156, Mismatches: 31, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
158 6 0.04
159 148 0.95
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGT
CGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCCAACATGCTGCCGATCC
TGCTACCACAACCCTTAATCCGGTCTGAT
Found at i:26485983 original size:26 final size:26
Alignment explanation
Indices: 26485954--26486006 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26485944 CCGGTCCAAT
*
26485954 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGCATG
* *
26485980 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGAGAATGAACTCCGCATG
26486006 C
1 C
26486007 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGCATG
Found at i:26486494 original size:342 final size:342
Alignment explanation
Indices: 26486050--26486677 Score: 818
Period size: 342 Copynumber: 1.8 Consensus size: 342
26486040 TCAGCCAGCC
* *
26486050 GGAGAGGCATAATGCGTAAGTCGTGGATCAGTTCGGTCCCCCTCTACGTACTGTCGATCCCACTG
1 GGAGAGGCATAATGCGTAAGTCGGGGATCAGTTCGATCCCCCTCTACGTACTGTCGATCCCACTG
* *
26486115 CCGGTCCTGCTACCACAACCCTCGATCAGGTTGGGGCTTAGACATGGAATGTACTAC-GTATGCC
66 CCAGTCCTGCTACCACAACCCTCGATCAGATTGGGGCTTAGACATGGAATGTACT-CTGTATGCC
*
26486179 TAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGACT-GGAGACGCAGAATGCGCAAGCC
130 TAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCG-CTCGGAGACGCAGAACGCGCAAGCC
* * * * *
26486243 AGAGATCGA-CTCGATCC-CTCCTGCGTGCTATCGATCCTGCTGTCGCAAACCTCGATCTGGTCT
194 AGAGATCGACCT-GATCCTC-CCTGCGTGCTATCGATCCTACTGCCGCAAACCTCGATCCGATCC
* *
26486306 GATCTTAGACTGGGGATGAACTCCGTATCCCTAAGTCAACCCACGAAAAGGGCATGCGGGTGTTC
257 GATCTTAGACTAGGAATGAACTCCGTATCCCTAAGTCAACCCACGAAAAGGGCATGCGGGTGTTC
26486371 AGCCGATCGGAGAGGGTGCCT
322 AGCCGATCGGAGAGGGTGCCT
* * * *
26486392 GGAGAGGCATAATGTGTAAGTCGGGGATCAGTTCGATCCCCCTCTATGTGCTG-CTGATCCCGCT
1 GGAGAGGCATAATGCGTAAGTCGGGGATCAGTTCGATCCCCCTCTACGTACTGTC-GATCCCACT
* * * * *
26486456 GCCAGTCCTGCTGCCATAGCCCTCGGTTCA-ATTGGGGCTTAGACGTGGAATGTACTCTGTATGC
65 GCCAGTCCTGCTACCACAACCCTC-GATCAGATTGGGGCTTAGACATGGAATGTACTCTGTATGC
** ** ** * * * *
26486520 CTAATTCAACCCACGAAATGAGCGTGCGGGCGTTCAGCCGGTCGGAGAGGCAGAACGCGCAAGTC
129 CTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGCTCGGAGACGCAGAACGCGCAAGCC
* * * * * * *
26486585 GGGGATCGGCCTGGTCTTCCCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGATCCGATCCGA
194 AGAGATCGACCTGATCCTCCCTGCGTGCTATCGATCCTACTGCCGCAAACCTCGATCCGATCCGA
26486650 TCTTAGACTAGGAATGAACTCCGTATCC
259 TCTTAGACTAGGAATGAACTCCGTATCC
26486678 TTAGACTGGG
Statistics
Matches: 242, Mismatches: 38, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
341 3 0.01
342 232 0.96
343 7 0.03
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Consensus pattern (342 bp):
GGAGAGGCATAATGCGTAAGTCGGGGATCAGTTCGATCCCCCTCTACGTACTGTCGATCCCACTG
CCAGTCCTGCTACCACAACCCTCGATCAGATTGGGGCTTAGACATGGAATGTACTCTGTATGCCT
AAGCCAACCCACGAAACAAGCGTGCGGGCACTCAACCGCTCGGAGACGCAGAACGCGCAAGCCAG
AGATCGACCTGATCCTCCCTGCGTGCTATCGATCCTACTGCCGCAAACCTCGATCCGATCCGATC
TTAGACTAGGAATGAACTCCGTATCCCTAAGTCAACCCACGAAAAGGGCATGCGGGTGTTCAGCC
GATCGGAGAGGGTGCCT
Found at i:26486728 original size:26 final size:26
Alignment explanation
Indices: 26486651--26486729 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
26486641 CCGATCCGAT
*
26486651 CTTAGACTAGGA-ATGAACTCCGTATC
1 CTTAGACT-GGAGATGAACTCCGTATG
*
26486677 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
26486703 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
26486729 C
1 C
26486730 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
25 2 0.04
26 47 0.96
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:26489388 original size:354 final size:352
Alignment explanation
Indices: 26488675--26489791 Score: 1311
Period size: 354 Copynumber: 3.2 Consensus size: 352
26488665 GAAATTTGGA
* * ** *
26488675 GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTAGGGGCGCTCAGCCGATCGAAGAG
1 GATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCGGAGAG
* * ** * * * *
26488740 GCATAATGCACAAGTCAGGGATCAA-CCGGTCCTTCTCTACGTGCTGTCGATCTCGCTGTCGGTC
66 GCATAATGCACAAGCCGGGGATCAACCCGGTCCCCCTTTGCGTGCTGTCGATCTCGCTGCCGATC
*
26488804 CTGCTGCCACAACTCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCA
131 CTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCA
* * * * *
26488869 ACCCACGAAACGAGCATGCGGGTGCTCAGCTGG-TCGGAGAGGTAGAATGCGCAAGCC-ATGGAT
196 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCT-GGAGAGGCAGAATGCGTAAGCCGA-GGTT
* * * * *
26488932 CGGCTCGATCCCTCCTGCGTGCTATCGATCCTACTGTCACAACCCTCGATCCGGTCTGATCTTAG
259 AGGCCCGATCCC-CCTGCGTGCTGTCGATCCTACTGTCAC--CCCTCGATCAGATCTGATCTTAG
* * *
26488997 ACT-TGGAATGAACTCCGTGTGCTTAGATTGGG
321 ACTGT-GAATGAACTCCGTATGCTTAGACTGAG
* * * * *
26489029 GATGAACTTCC-TATGGCTAAGTCAACCCATGAAATAACCGTACGGGCGCTCAGCTGGCCGGAGA
1 GATGAAC-TCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCGGAGA
* * * * * *
26489093 GGCATAATACGCAAGCCGGGGATCAACCCGGTCCCCCTTTGCATGCTATTGATCTCGATGCCGAT
65 GGCATAATGCACAAGCCGGGGATCAACCCGGTCCCCCTTTGCGTGCTGTCGATCTCGCTGCCGAT
*
26489158 CCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCC
130 CCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCC
* * *
26489223 AACCCATGAAACAAGCGTGCGGGTGCTTAGCCGGCTGGAGAGGCAGAATGCGTAAGCCGAGGTTA
195 AACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCTGGAGAGGCAGAATGCGTAAGCCGAGGTTA
* *
26489288 GGCCCGATCCCCCTGCGTGCTGTCGATCCTACTGTCGTACCCCTCGATCTGATCTGATCTTAAAC
260 GGCCCGATCCCCCTGCGTGCTGTCGATCCTACTGTC--ACCCCTCGATCAGATCTGATCTTAGAC
*
26489353 TGTGAATGAACTCCGTATGCTTACACTGAG
323 TGTGAATGAACTCCGTATGCTTAGACTGAG
* * * * *
26489383 GATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGCATGCGGGCGCTCAGCCGGCTGGAGAG
1 GATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCGGAGAG
* * * *
26489448 GCATAATGCATAAGCTGGGGATCAGCCCGATCCCCC-TTGCGTGCTGTCGATC-CTGCTGCC-AG
66 GCATAATGCACAAGCCGGGGATCAACCCGGTCCCCCTTTGCGTGCTGTCGATCTC-GCTGCCGA-
* * * * *
26489510 TCCTGCTGCCACAACCCTCAGTTCGGCTGGGGCTTAGACATGGAATGTACTTCGTATGCCTAAGC
129 TCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGC
* * * * ** * * * * *
26489575 CAACCCGCGAAACGAGCGTACGGGCGCTCAGTCAACCGAAAAGGCAGAATGCGTTAATCTG-GGA
194 CAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCTGGAGAGGCAGAATGCG-TAAGCCGAGG-
* *
26489639 TCA-GCCCGATCTCCCCTGCGTGCTGTCGATCCTACTGTCACAACCTCGATCAGAT-TCGATCTT
257 TTAGGCCCGATC-CCCCTGCGTGCTGTCGATCCTACTGTCAC-CCCTCGATCAGATCT-GATCTT
* * *
26489702 AGACTGGGAATGAACTCCGTATTCTTAGACTGAA
319 AGACTGTGAATGAACTCCGTATGCTTAGACTGAG
* * *
26489736 GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCG
1 GATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCG
26489792 ACCAAAGAGG
Statistics
Matches: 653, Mismatches: 95, Indels: 31
0.84 0.12 0.04
Matches are distributed among these distances:
352 5 0.01
353 228 0.35
354 259 0.40
355 157 0.24
356 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (352 bp):
GATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGGCCGGAGAG
GCATAATGCACAAGCCGGGGATCAACCCGGTCCCCCTTTGCGTGCTGTCGATCTCGCTGCCGATC
CTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCA
ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCTGGAGAGGCAGAATGCGTAAGCCGAGGTTAG
GCCCGATCCCCCTGCGTGCTGTCGATCCTACTGTCACCCCTCGATCAGATCTGATCTTAGACTGT
GAATGAACTCCGTATGCTTAGACTGAG
Found at i:26489740 original size:26 final size:26
Alignment explanation
Indices: 26489698--26489749 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26489688 TCAGATTCGA
*
26489698 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGAGAATGAACTCCGTAT
26489724 TCTTAGACTGA-AGATGAACTCCGTAT
1 TCTTAGACTGAGA-ATGAACTCCGTAT
26489750 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGAGAATGAACTCCGTAT
Found at i:26490904 original size:158 final size:155
Alignment explanation
Indices: 26490446--26490947 Score: 423
Period size: 158 Copynumber: 3.2 Consensus size: 155
26490436 AGCTCTGTAT
* * * * * * *
26490446 GCTTAGATATGGAATGAACTCCGTATGCCTAAGCTAACCCATTAAATGAGCGTGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * ** * * *
26490511 CCGGTCGGAGAGGCAAAATGCACAAGCCAGGGATCGACCCGGTCCCCCCTGCATGCTGTTGATCC
66 CCGGCCGAAGAGGCAAAATGCGTAAGCC-GGGATCGGCCCGGT-CCCCCTTCGTGCTGTTGATCC
* * * * *
26490576 TACTGTCGCAGCCCTTGATCCGATCTGA
129 TGCTGTCGCAACCCTTGGTCTG-GCTGA
* ** * * * *
26490604 TCTTAGAC-TGGGAATGAACTTTGTATGCATAACCCAACCCACGAAACGAGCGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * ** * * **
26490668 GCTGGCCGAAAAGGCACAATGCGTAAGCCATGATCAGCCCGATCCCCCTCTACGTGCTGCCGATC
65 GCCGGCCGAAGAGGCAAAATGCGTAAGCCGGGATCGGCCCGGTCCCCCT-T-CGTGCTGTTGATC
* * * * *
26490733 CCGCTGCCACAACCCTCGGTCTGGCTGGG
128 CTGCTGTCGCAACCCTTGGTCTGGCT-GA
* * **
26490762 GCTTAGACATGGAATGAGCTCCCTATGGTTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
26490827 CCGGCCGAAGAGGCAAAATACGTAAGCCGGGGATCGGCCTGGTGCCCCCTTCGTGCTGTTGATCA
66 CCGGCCGAAGAGGCAAAATGCGTAAGCC-GGGATCGGCCCGGT-CCCCCTTCGTGCTGTTGATCC
* * **
26490892 TGCTATCGCAACCTTTGGTCTGGTCCAA
129 TGCTGTCGCAACCCTTGGTCTGG-CTGA
*
26490920 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
26490948 TTAAACTAGG
Statistics
Matches: 259, Mismatches: 76, Indels: 18
0.73 0.22 0.05
Matches are distributed among these distances:
156 6 0.02
157 13 0.05
158 222 0.86
159 12 0.05
160 6 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAAAATGCGTAAGCCGGGATCGGCCCGGTCCCCCTTCGTGCTGTTGATCCTG
CTGTCGCAACCCTTGGTCTGGCTGA
Found at i:26490957 original size:26 final size:26
Alignment explanation
Indices: 26490921--26490973 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26490911 CTGGTCCAAT
*
26490921 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* *
26490947 CTTAAACTAGGGATGAACTCTGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
26490973 C
1 C
26490974 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:26491308 original size:26 final size:26
Alignment explanation
Indices: 26491279--26491331 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26491269 CCGGTTCGAT
* * *
26491279 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAACGAACTCCATATG
*
26491305 CTTAGACCGGGGACGAACTCCATATG
1 CTTAGACCGGGAACGAACTCCATATG
26491331 C
1 C
26491332 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACCGGGAACGAACTCCATATG
Found at i:26492024 original size:26 final size:26
Alignment explanation
Indices: 26491995--26492047 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26491985 GGCTCAAAAT
*
26491995 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
26492021 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26492047 C
1 C
26492048 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26493263 original size:26 final size:26
Alignment explanation
Indices: 26493234--26493285 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26493224 CTCAAAATAT
*
26493234 TTAGAC-TGGGAATGAGCTCCATATGC
1 TTAGACAT-GGAATGAACTCCATATGC
*
26493260 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCATATGC
26493286 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCATATGC
Found at i:26494136 original size:27 final size:26
Alignment explanation
Indices: 26494094--26494147 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 26
26494084 CCGATCTGAT
26494094 CTTAGACTGGGAATGAACTTCCGTATG
1 CTTAGACTGGGAATGAAC-TCCGTATG
*
26494121 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26494147 C
1 C
26494148 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26495452 original size:26 final size:26
Alignment explanation
Indices: 26495416--26495468 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26495406 CTGGTCCAAT
*
26495416 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* *
26495442 CTTAAACTAGGGATGAACTCTGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
26495468 C
1 C
26495469 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:26496524 original size:26 final size:26
Alignment explanation
Indices: 26496495--26496547 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26496485 GGCTCAAAAT
*
26496495 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
26496521 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26496547 C
1 C
26496548 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26497041 original size:26 final size:26
Alignment explanation
Indices: 26497005--26497057 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26496995 CCGATCTGAT
26497005 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* * *
26497031 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
26497057 C
1 C
26497058 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:26497755 original size:26 final size:26
Alignment explanation
Indices: 26497726--26497777 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26497716 GCTCAAAATA
*
26497726 TTAGAC-TGGGAATGAGCTCCATATGC
1 TTAGACAT-GGAATGAACTCCATATGC
*
26497752 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCATATGC
26497778 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCATATGC
Found at i:26498144 original size:158 final size:158
Alignment explanation
Indices: 26497750--26498177 Score: 438
Period size: 159 Copynumber: 2.7 Consensus size: 158
26497740 AGCTCCATAT
26497750 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
26497815 CCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCAGTCCCTCCCTGCGTGCTGTCGATC
66 CCGGTC-GAGAGGCAAAATGCGCAAGCCGAGGATAGACCCAGTCCCTCCCTACGTGCTGCCGATC
* ** ** *
26497880 CTGTTGCTGCAACCCTCGGTCTGGTCTGA
130 CCGCAGCCACAACCCTCGGTCTGGACTGA
* * * * *
26497909 TCTTAGAC-TGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
26497973 GCCGGTCGAAGAGGCATAATGCGCAAGCCGGGGAATAG--CCTGATCCC-CCTCTACGTGCTGCC
65 GCCGGTCG-AGAGGCAAAATGCGCAAGCCGAGG-ATAGACCCAG-TCCCTCC-CTACGTGCTGCC
* *
26498035 GGTCCCGCAGCCACAA-CCTCGGTCT-GACTGGG
126 GATCCCGCAGCCACAACCCTCGGTCTGGACT-GA
* * * * *
26498067 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGGGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* * * * * *
26498131 GCCTGCCAGAGAGGTAAAATGCGCAAGCCGAAGATCGACCCAATCCC
65 GCCGGTC-GAGAGGCAAAATGCGCAAGCCGAGGATAGACCCAGTCCC
26498178 CCTTGTCTGC
Statistics
Matches: 219, Mismatches: 39, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
157 7 0.03
158 96 0.44
159 113 0.52
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGAGAGGCAAAATGCGCAAGCCGAGGATAGACCCAGTCCCTCCCTACGTGCTGCCGATCC
CGCAGCCACAACCCTCGGTCTGGACTGA
Found at i:26498575 original size:355 final size:353
Alignment explanation
Indices: 26497910--26498705 Score: 882
Period size: 355 Copynumber: 2.3 Consensus size: 353
26497900 CTGGTCTGAT
* * * * *
26497910 CTTAGACTGG-GAATGAACTCCGTATGCGTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG
1 CTTAGACTGGAG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * *
26497974 CCG-GTCGAAGAGGCATAATGCGCAAGCCGGGGAAT-AGCCTGAT-CCCC-CT-C-TA----CG-
65 CCGACTAG-AGAGGCAGAATACGCAAGCCGGGG-ATCAGCCCGATCCCCCTCTGCATACTGTCGA
26498028 --T-GCTGCCGGTCCCGCAGCCACAACCTCGGTCTGACTGGGGCTTAGACATGGAATGAGCTCCC
128 TCTCGCTGCCGGTCCCGCAGCCACAACCTCGGTCTGACTGGGGCTTAGACATGGAATGAGCTCCC
* * *
26498090 TATGCCTAAGCCAACCCATGAAACAGGCGTGGGGGCACTCAGCCTGCCAGAGAGGTAAAATGCGC
193 TATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCACTCAACCTGCCAGAGAGGCAAAATGCGC
**
26498155 AAGCCGAAGATCGACCCAATCCCCCTTGTCTGCTGTCGATCTTACCGTCGCAACCCTCAATCCGA
258 AAGCCGAAGATCGACCCAATCCCCCTTGTCTGCTACCGATCTTACCG-CGCAACCCTCAATCCGA
26498220 TCTGATCTAAAACTGGGAATGAACTCCGTATG
322 TCTGATCTAAAACTGGGAATGAACTCCGTATG
* * *
26498252 CTTAGACTTGAGATGAACTCTGTTTGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC
1 CTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC
*
26498317 CGACT-GTAGAGGCATAATACGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCATACTGTCGATC
66 CGACTAG-AGAGGCAGAATACGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCATACTGTCGATC
* ** * * * *
26498381 TCGCTGCCGGTCCTGTTGCCATAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGTA-CTTCG
130 TCGCTGCCGGTCCCGCAGCCACAA-CCTCGGTCTGACTGGGGCTTAGACATGGAATG-AGCTCCC
* * * * *
26498445 TATGCCTAAGCCAACCCATTAAAC-GAGCGTGCGGGCGCTCAACC-GATCGGAGAGGCAGAATGC
193 TATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGGCACTCAACCTG-CCAGAGAGGCAAAATGC
* * * ** * * *
26498508 GCCAGCC-AGGGATCGGCCCGGTCCCTCTTG-CATGTTACCGATCCTGCTACCG-G-AACCCTCG
256 GCAAGCCGA-AGATCGACCCAATCCCCCTTGTC-TGCTACCGAT-CT--TACCGCGCAACCCTCA
* *
26498569 ATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATG
316 ATCCGATCTGATCTAAAACTGGGAATGAACTCCGTATG
* * * *
26498607 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC
* *
26498672 CGACTAGAGAGGCAGGATGCGCAAGCCGGGGATC
66 CGACTAGAGAGGCAGAATACGCAAGCCGGGGATC
26498706 GAACGGGTGG
Statistics
Matches: 380, Mismatches: 49, Indels: 37
0.82 0.11 0.08
Matches are distributed among these distances:
341 2 0.01
342 88 0.23
343 6 0.02
344 2 0.01
345 1 0.00
346 2 0.01
350 2 0.01
353 1 0.00
354 22 0.06
355 244 0.64
356 5 0.01
358 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (353 bp):
CTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC
CGACTAGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCATACTGTCGATCT
CGCTGCCGGTCCCGCAGCCACAACCTCGGTCTGACTGGGGCTTAGACATGGAATGAGCTCCCTAT
GCCTAAGCCAACCCATGAAACAGGCGTGCGGGCACTCAACCTGCCAGAGAGGCAAAATGCGCAAG
CCGAAGATCGACCCAATCCCCCTTGTCTGCTACCGATCTTACCGCGCAACCCTCAATCCGATCTG
ATCTAAAACTGGGAATGAACTCCGTATG
Found at i:26498610 original size:26 final size:26
Alignment explanation
Indices: 26498581--26498633 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26498571 CCGATCTGAT
26498581 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26498607 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26498633 C
1 C
26498634 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26499333 original size:26 final size:26
Alignment explanation
Indices: 26499304--26499356 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26499294 GGCTCAGAAT
*
26499304 CTTAGAC-TGAGAATGAGCTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
26499330 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26499356 C
1 C
26499357 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26499632 original size:159 final size:159
Alignment explanation
Indices: 26499330--26499693 Score: 378
Period size: 159 Copynumber: 2.3 Consensus size: 159
26499320 GCTCCGTATG
* * *
26499330 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGAGTGCGGGCGCTCAGC
* * * * *
26499395 CGATCGGAAGGGTAGAATGCGCAAGCTGGGGATCGACCTGATCCCCCCCTGCGTGCTGTCGATCC
66 CGATCGGAAGGGCAGAATGCGCAAGCCGGGGATCGACCAGATCCCCCCCTGCATACTGTCGATCC
* ** *
26499460 TACTACTGCAACCCTCGATCCGATCTGAT
131 CACTACCACAACCCTCAATCCGATCTGAT
* *
26499489 CTTAGAC-TGGAAATGAACTCCGTATGCATAAGTCAACCCACGAAACAAGCA-TGCGGGCGCTGA
1 CTTAGACATGG-AATGAACTCCGTATGCATAAGCCAACCCACGAAACAAG-AGTGCGGGCGCTCA
* * * * *
26499552 GCCGGTC-GAAGAGGCATAATGCGTAAGCCGGGGATCGACCCAG-TTCCCCTCTGCATACTGTCG
64 GCCGATCGGAAG-GGCAGAATGCGCAAGCCGGGGATCGA-CCAGATCCCCCCCTGCATACTGTCG
* * * * **
26499615 ATCCCGCTGCCATAACCCTCAATCCG-GCTAGGG
127 ATCCCACTACCACAACCCTCAATCCGATCT-GAT
* * * * *
26499648 CTTAGACATAGAATGATCTCCCTATGCCTAAGCCAACCCATGAAAC
1 CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAAC
26499694 GGGTGTATGG
Statistics
Matches: 168, Mismatches: 31, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
158 9 0.05
159 153 0.91
160 6 0.04
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACAAGAGTGCGGGCGCTCAGC
CGATCGGAAGGGCAGAATGCGCAAGCCGGGGATCGACCAGATCCCCCCCTGCATACTGTCGATCC
CACTACCACAACCCTCAATCCGATCTGAT
Found at i:26499856 original size:26 final size:26
Alignment explanation
Indices: 26499806--26499858 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26499796 CCGTTCTGAT
**
26499806 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26499832 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26499858 C
1 C
26499859 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26500204 original size:26 final size:26
Alignment explanation
Indices: 26500175--26500227 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26500165 CCGGTTTGAT
26500175 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26500201 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26500227 C
1 C
26500228 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26501238 original size:159 final size:159
Alignment explanation
Indices: 26500934--26501353 Score: 423
Period size: 159 Copynumber: 2.6 Consensus size: 159
26500924 AGCTACGTAT
* * *
26500934 GCTTAGACATGGAATGGACTCCATATGCCTAAGCCGACCCACGAAACAAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGGACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* *
26500999 CCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATTGACCCAGTCCCCCCTTGCGTGCTGTCGATC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTTGCGTGCTGCCGATC
** * * *
26501064 CTGCTGCCGCAACCCTTGGTCCGGTCT-GA
131 CCACTACCACAACCCTTGGTCCAG-CTGGA
* ** * * * *
26501093 TCTTAGAC-TGGGAATGGACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATGGACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * * * * * ** *
26501157 GCCGGTCGAAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGGTCTCCTTTTGCGTGCTGCCGGT
65 ACCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTTGCGTGCTGCCGAT
** *
26501222 CCCACTACCATGACCCTTGGTCCAGCTGGG
130 CCCACTACCACAACCCTTGGTCCAGCTGGA
* * * *
26501252 GCTTAGACATGGAATGTACTCCATATGCCTAAGTCATCCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGGACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * *
26501317 TCGACC-AGAGAGGCAGGATGCACAAGTCGGGGATCGA
66 CCGACCGA-AGAGGCAGAATGCGCAAGCCGAGGATCGA
26501354 ACGGGTGGTA
Statistics
Matches: 206, Mismatches: 51, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
158 4 0.02
159 201 0.98
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.30, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGGACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTTGCGTGCTGCCGATC
CCACTACCACAACCCTTGGTCCAGCTGGA
Found at i:26501989 original size:26 final size:26
Alignment explanation
Indices: 26501960--26502012 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26501950 GGCTCAAAAT
*
26501960 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
26501986 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26502012 C
1 C
26502013 CTAAGCCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26502404 original size:159 final size:158
Alignment explanation
Indices: 26501985--26502437 Score: 441
Period size: 159 Copynumber: 2.9 Consensus size: 158
26501975 AGCTCCGTAT
*
26501985 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAATCCACGAAAC-GAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG-AACTGAGCGTGCGGGCGCTCA
* *** ** * * *
26502049 GCCTGTTGGAGAGGCAGAATGTACAAGCCGGGGATCGACCCGGTCCCCCTCTACGTGCTATCGAT
65 ACC-GGCCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCTCTACGTGCTGTCGAT
* * *
26502114 CCTGCTACCACAATCGTCGGTCTGATCCAA
129 CCTGCTGCCACAACCCTCGGTCTGATCCAA
* * * ** * * * *
26502144 TCTTAGAC-TGGCAATGAACTCCGTATGCATAAGTCAACCCGTGAAATGAGTGTGCGGACGCTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAACTGAGCGTGCGGGCGCTCA
* * * * *
26502208 GCTGGCCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCATCTCTACGTGCTGTC-AG
65 ACCGGCCG-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCTCTACGTGCTGTCGA-
***
26502272 TCCTGCTGCCACAACCCTCGGT-TCGA-CTGGG
128 TCCTGCTGCCACAACCCTCGGTCT-GATC-CAA
* * *
26502303 GCTTAGACATGGAATGACCTCCCTATACCTAAGCCAACCCACGAACTGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAACTGAGCGTGCGGGCGCTCAA
* * * * * *
26502368 TCGGCCAGAGAGGTAGAATGCGCAAGCCGAGGATCGGCTCGATCCCTC-CTGCGTGCTGTCGATC
66 CCGGCC-GAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCTCTACGTGCTGTCGATC
26502432 CTGCTG
130 CTGCTG
26502438 TCGTAACCCT
Statistics
Matches: 234, Mismatches: 51, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
158 29 0.12
159 201 0.86
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAACTGAGCGTGCGGGCGCTCAA
CCGGCCGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCTCTACGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCTGATCCAA
Found at i:26502503 original size:26 final size:26
Alignment explanation
Indices: 26502462--26502514 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
26502452 CTGGTTTGAT
26502462 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
26502488 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
26502514 C
1 C
26502515 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:26503461 original size:160 final size:156
Alignment explanation
Indices: 26503191--26503686 Score: 507
Period size: 160 Copynumber: 3.1 Consensus size: 156
26503181 GCTTAGACAT
* * * ** *
26503191 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGGCGCTCAGTAGGCAGGAG
1 GGAATGAACTCCGTATG-CTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAGCCGGCCGGAG
* * *
26503256 AGGCAGAATGCGCAAGTCGGGGATCAACCTGGTCCCCCACTGCGTGCTGTCGATCCTGCTGCCGC
65 AGGCAGAATGCGCAAGCCGGGGATCGACCTGGT-CCCCACTGCGTGCTGTCGATCCTGCTGCCAC
*
26503321 AACCCCTTGTTCTGGTCTGATCTTAGATTG
129 AA-CCCTAGTTC-GGTCTGATCTTAGATTG
* * * * * *
26503351 GGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTGTGGGCGCTGAGCCGGCCGAAT
1 GGAATGAACTCCGTATGC-TAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAGCCGGCCGGAG
* * * * *
26503416 AGGCATAATGCGCAAGCCAGGGATCGGCCTGGTCCTCCTCTGCGTGCTGTCGATCCCGCTGCCAC
65 AGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCC-CCACTGCGTGCTGTCGATCCTGCTGCCAC
**
26503481 AACCCTCAGTTCGG-CTGGGGCTTAGACTT-
129 AACCCT-AGTTCGGTCT-GATCTTAGA-TTG
** *
26503510 GGAAT-AAGCTGCC-TATGTCTAAGCCAACCCACGAAATG-GACGTGTGGGCATTCAACCGGCCG
1 GGAATGAA-CT-CCGTATG-CTAAGCCAACCCACGAAATGAG-CGTGTGGGCGCTCAGCCGGCCG
** * * * *
26503572 GAGAGGCAGAATGCATAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGTTGTCGATCCTACTGCC
62 GAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCACTGCGTGCTGTCGATCCTGCTGCC
* * * *
26503637 ACAACCCTCGGTCCGGTCCGATCTTAGACTG
127 ACAACCCT-AGTTCGGTCTGATCTTAGATTG
26503668 GGAATGAACTCCGTATGCT
1 GGAATGAACTCCGTATGCT
26503687 TAGACTAGGG
Statistics
Matches: 275, Mismatches: 48, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
157 5 0.02
158 60 0.22
159 94 0.34
160 116 0.42
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (156 bp):
GGAATGAACTCCGTATGCTAAGCCAACCCACGAAATGAGCGTGTGGGCGCTCAGCCGGCCGGAGA
GGCAGAATGCGCAAGCCGGGGATCGACCTGGTCCCCACTGCGTGCTGTCGATCCTGCTGCCACAA
CCCTAGTTCGGTCTGATCTTAGATTG
Found at i:26503688 original size:26 final size:26
Alignment explanation
Indices: 26503659--26503711 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26503649 CCGGTCCGAT
26503659 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
26503685 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
26503711 C
1 C
26503712 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:26504134 original size:26 final size:26
Alignment explanation
Indices: 26504088--26504140 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26504078 GGCTCAAAAT
* *
26504088 CTTAGACTGGGAATGAGCTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
26504114 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
26504140 C
1 C
26504141 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:26504617 original size:26 final size:26
Alignment explanation
Indices: 26504588--26504640 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26504578 CCGGTCCGAT
*
26504588 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26504614 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
26504640 C
1 C
26504641 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26505590 original size:11 final size:11
Alignment explanation
Indices: 26505574--26505606 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
26505564 CAGTTAGGCT
26505574 CTCCGACGATG
1 CTCCGACGATG
26505585 CTCCGACGATG
1 CTCCGACGATG
26505596 CTCCGACGATG
1 CTCCGACGATG
26505607 GTGCCCCAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:26506619 original size:25 final size:26
Alignment explanation
Indices: 26506585--26506636 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26506575 CCAGTCTGAT
26506585 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26506610 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26506636 C
1 C
26506637 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26507604 original size:26 final size:26
Alignment explanation
Indices: 26507575--26507627 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26507565 CCGATCTGAT
*
26507575 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
26507601 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
26507627 C
1 C
26507628 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:26508163 original size:13 final size:13
Alignment explanation
Indices: 26508141--26508179 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
26508131 AGCACCCATT
*
26508141 GCACATCATGTGC
1 GCACAGCATGTGC
26508154 GCACAGCATGTGC
1 GCACAGCATGTGC
*
26508167 GCCCAGCATGTGC
1 GCACAGCATGTGC
26508180 ACCGTGGCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.18
Consensus pattern (13 bp):
GCACAGCATGTGC
Found at i:26508224 original size:26 final size:26
Alignment explanation
Indices: 26508195--26508244 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
26508185 GGCTCAAAAT
*
26508195 CTTAGAC-TGGGAATGAGCTCCGTACG
1 CTTAGACAT-GGAATGAACTCCGTACG
26508221 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
26508245 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTACG
Found at i:26508627 original size:159 final size:157
Alignment explanation
Indices: 26508220--26508721 Score: 489
Period size: 159 Copynumber: 3.2 Consensus size: 157
26508210 AGCTCCGTAC
* * * *
26508220 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * *
26508285 CCGACCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCA-GTCCCCC-CTACATGCTGTCGAT
66 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATTGA-CCAGGTCCCCCTCT--ATGCTGTCGAT
* * *
26508348 CCTACTGCCACAACCCTTGGTCTGGTTCGA
128 CCTGCTGCCACAACCCTCGGTCTGGCTCGA
* * * * * * ** *
26508378 TCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCAACGAAATGAGCATGCGGGCATTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * * *
26508442 GCCGGCCGAAGAGGCACAATGGGCAAGTCAGAGATTGACCTGGTCCCCCTCTGTGTGCTGTCGGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATTGACCAGGTCCCCCTC--TATGCTGTCGAT
* * *
26508507 CCCGCTGCCACAACCCTCGGTCTGGCTGGG
128 CCTGCTGCCACAACCCTCGGTCTGGCTCGA
* * * *
26508537 GCTTAGACATGGAATGAGCCCCCTATGCCTAAGCCAACCCACGAAATTGA-CGTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-TGAGCGTGCGGGCGCTCA
* * * *
26508601 GCTGGCTGGAGAGGCAGAATGCGCAAGTCGGGGATTGATCAGGTCCCCCTAC-ATGCTGTTGATC
65 GCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATTGACCAGGTCCCCCT-CTATGCTGTCGATC
26508665 CTGCTGCCACAACCCTCGGT-TCGG-TCTGA
129 CTGCTGCCACAACCCTCGGTCT-GGCTC-GA
* *
26508694 TCTTAAAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
26508722 TTAGAATGGG
Statistics
Matches: 270, Mismatches: 63, Indels: 23
0.76 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 55 0.20
158 86 0.32
159 120 0.44
160 5 0.02
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATTGACCAGGTCCCCCTCTATGCTGTCGATCCT
GCTGCCACAACCCTCGGTCTGGCTCGA
Found at i:26509067 original size:26 final size:26
Alignment explanation
Indices: 26509038--26509090 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26509028 CAGGTCCAAT
*
26509038 CTTAGGCTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26509064 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26509090 C
1 C
26509091 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26510169 original size:26 final size:26
Alignment explanation
Indices: 26510128--26510180 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26510118 CCAGTTTGAT
26510128 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26510154 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
26510180 C
1 C
26510181 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26510962 original size:26 final size:26
Alignment explanation
Indices: 26510933--26510985 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26510923 CCAATCCGAT
26510933 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26510959 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
26510985 C
1 C
26510986 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26511494 original size:27 final size:26
Alignment explanation
Indices: 26511420--26511506 Score: 77
Period size: 26 Copynumber: 3.2 Consensus size: 26
26511410 ATCGGCCCGG
*
26511420 CTTTTTACGGTTTCGAATTTTTTTAAA
1 CTTTTTAC-GTTTCGAATTTTTTAAAA
* * *
26511447 TTTTTTACGATTCCGTA-TTTTTAAAA
1 CTTTTTACG-TTTCGAATTTTTTAAAA
*
26511473 CTTTTTGCAGTTTCGAATTTTTTTAAAA
1 CTTTTTAC-GTTTCGAA-TTTTTTAAAA
*
26511501 TTTTTT
1 CTTTTT
26511507 TAGAAAGAGT
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
26 20 0.43
27 13 0.28
28 14 0.30
ACGTcount: A:0.23, C:0.10, G:0.09, T:0.57
Consensus pattern (26 bp):
CTTTTTACGTTTCGAATTTTTTAAAA
Found at i:26512227 original size:139 final size:139
Alignment explanation
Indices: 26511973--26512248 Score: 349
Period size: 139 Copynumber: 2.0 Consensus size: 139
26511963 CGTATGCCTA
* * *
26511973 AGCCAACCCACGAAACGAGCATACGGGCGCTCAGCCGACCGGAGAGGCAAAATGCACAAGTCGGG
1 AGCCAACCCACGAAACGAGCATACGGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAGCCGAG
* * * *
26512038 GATCGACCCAGTCCCCACTTGCGTGCTATCGATCCTACTATCACAACCTCAGTCTGGTCTGATCT
66 GATCGACCCAGTCCCCACCTGCGTGCTATCGATCCTACTACCACAACCTCACTCCGGTCTGATCT
26512103 TAGACTGGG
131 TAGACTGGG
* * * * * *
26512112 AGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCGATCGGAGAGGCAGAATTCGCAAGCCGAG
1 AGCCAACCCACGAAACGAGCATACGGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAGCCGAG
* * * ** *
26512177 GATCGACCC-GATCCCC-CCTGTGTGCTGTCGATCCTGCTACCGTAACCCTCACTCCGGTTTGAT
66 GATCGACCCAG-TCCCCACCTGCGTGCTATCGATCCTACTACCACAA-CCTCACTCCGGTCTGAT
26512240 CTTAGACTG
129 CTTAGACTG
26512249 TGAATGAACT
Statistics
Matches: 116, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
138 23 0.20
139 93 0.80
ACGTcount: A:0.24, C:0.32, G:0.25, T:0.18
Consensus pattern (139 bp):
AGCCAACCCACGAAACGAGCATACGGGCGCTCAACCGACCGGAGAGGCAAAATGCACAAGCCGAG
GATCGACCCAGTCCCCACCTGCGTGCTATCGATCCTACTACCACAACCTCACTCCGGTCTGATCT
TAGACTGGG
Found at i:26512455 original size:158 final size:158
Alignment explanation
Indices: 26512112--26512525 Score: 388
Period size: 158 Copynumber: 2.6 Consensus size: 158
26512102 TTAGACTGGG
* * * * *
26512112 AGCCAACCCACGAAATGAGCGTACGGGCGCTCAACCGATCGGAGAGGCAGAATTCGCAAGCCGAG
1 AGCCAACCCATGAAATGAGCGTACGGGCGCTCAACCAACCGAAGAGGCAGAATGCGCAAGCCGAG
* * * ** * * *
26512177 GATCGACCCGATCCCCCCTGTGTGCTGTCGATCCTGCTACCGTAACCCTCACTCCGGTTTGATCT
66 GATCGACCCGATCCCCCCTGCGAGCTGTCGATCCCGCTACCACAACCCTCACTCCGGCTAGAGCT
26512242 TAGACTGTGAATGAACTCCATATGCATA
131 TAGACTGTGAATGAACTCCATATGCATA
* * * * * * * *
26512270 AGTCAATCCATGAAACGAGCGTACGGGCGTTGAGCCAACCGAAGAGGCATAATGCGCAAGTCGAG
1 AGCCAACCCATGAAATGAGCGTACGGGCGCTCAACCAACCGAAGAGGCAGAATGCGCAAGCCGAG
* * * *
26512335 GATCGACCCGGTCCCCCTCTGCGAGCTGTCGGTCCCGCTGCCACAACCCTCAGTCCGGCTAG-GC
66 GATCGACCCGATCCCCC-CTGCGAGCTGTCGATCCCGCTACCACAACCCTCACTCCGGCTAGAGC
* * *
26512399 TTAGACATG-GAATGAGCTCCCTATGCCTA
130 TTAGAC-TGTGAATGAACTCCATATGCATA
* * * * *** ** * *
26512428 AGCCAACCCATGAAATGGGCGTGCGGGCACTCAGCCGGTCGGTGAGGCAGAAAGTGCAAGCCGAG
1 AGCCAACCCATGAAATGAGCGTACGGGCGCTCAACCAACCGAAGAGGCAGAATGCGCAAGCCGAG
* *
26512493 GATC-AGCCC-AGT-CCCCCTTCGTGCTGTCGATCC
66 GATCGA-CCCGA-TCCCCCCTGCGAGCTGTCGATCC
26512526 TGCTGTCGCA
Statistics
Matches: 203, Mismatches: 49, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
156 14 0.07
157 5 0.02
158 148 0.73
159 36 0.18
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
AGCCAACCCATGAAATGAGCGTACGGGCGCTCAACCAACCGAAGAGGCAGAATGCGCAAGCCGAG
GATCGACCCGATCCCCCCTGCGAGCTGTCGATCCCGCTACCACAACCCTCACTCCGGCTAGAGCT
TAGACTGTGAATGAACTCCATATGCATA
Found at i:26514144 original size:354 final size:355
Alignment explanation
Indices: 26513689--26514365 Score: 887
Period size: 354 Copynumber: 1.9 Consensus size: 355
26513679 CCTCTGCGTG
* **
26513689 CTGCCGATCCTGCTACCACAACCCTCGGTCAGATGGGGCTTAGACGTGGAATGTACTCCGTATGC
1 CTGCCGATCCTGCTACCACAACCCTCGATCAGATGGGGCTTAGACGTGGAATCCACTCCGTATGC
* * * **
26513754 CTAAGCCAACCCATAAAACGAGCGTGCAAGTGCTCAGCCGGCCGGAGAGGTAGAATACGTAAGCC
66 CTAAGCCAACCCACAAAACGAGCGTGCAAGTGCTCAGCCGACCGGAAAGGTAGAATACACAAG-C
* * * *
26513819 AG-GGATCGG-CCTGGT-CCCTCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCAATCCGATTC
130 AGAGGATCGGTCC-GATCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCAATCCGATTC
* * * * *
26513881 GCTCTTAGACTGGCACTAAACTCCGTATGCTTAGACT-AGGGATGCACTCCGAATGCCTAAGTCA
194 GATCTTAGACTGGCAATAAACTCCATATGCTTAGAATGAGGGATGAACTCCGAATGCCTAAGTCA
* * * *
26513945 ACCCACGAAACGAGCGTACGGGTGCTCAGCCGATC-GAAGAGGCATAATGCACAAGCCGGGGATC
259 ACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAG-AGAGGCAGAATGCACAAGCCGGGGATC
26514009 AGCCTGATACCCTTCTGCATGCTGTCGATCTCA
323 AGCCTGATACCCTTCTGCATGCTGTCGATCTCA
* * * *
26514042 CTGCCGGTCCTGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACGTGGAATCCACTCCGTATG
1 CTGCCGATCCTGCTACCACAACCCTCGAT-CAGATGGGGCTTAGACGTGGAATCCACTCCGTATG
* * * * *
26514107 CCTAAGCCAACCCACGAAATGAGCGTGCAGGTGCTCAGCCGATCGGAAAGGTAGAATGCACAAGC
65 CCTAAGCCAACCCACAAAACGAGCGTGCAAGTGCTCAGCCGACCGGAAAGGTAGAATACACAAGC
* * * *
26514172 TGAGGATCGGTCCGATCCCCCCTACGTGCTGTCGATCCTGCTATCGCAACCCTCGATCCGGTTCG
130 AGAGGATCGGTCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCAATCCGATTCG
* * * *
26514237 ATCTTAGACTGGGAATGAACTCCATATGCTTAGAATGGGGGGATGAACTCCGTATGCCTAAGTCA
195 ATCTTAGACTGGCAATAAACTCCATATGCTTAGAAT-GAGGGATGAACTCCGAATGCCTAAGTCA
* * * * *
26514302 ACCCATGAAATGAGTGTGCGGGCGCTCAACCGACCAGAGAGGCAGGATGCACAAGCCGGGGATC
259 ACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGAGGCAGAATGCACAAGCCGGGGATC
26514366 GAATGGGTGG
Statistics
Matches: 274, Mismatches: 43, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
353 28 0.10
354 94 0.34
355 74 0.27
357 77 0.28
358 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (355 bp):
CTGCCGATCCTGCTACCACAACCCTCGATCAGATGGGGCTTAGACGTGGAATCCACTCCGTATGC
CTAAGCCAACCCACAAAACGAGCGTGCAAGTGCTCAGCCGACCGGAAAGGTAGAATACACAAGCA
GAGGATCGGTCCGATCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCAATCCGATTCGA
TCTTAGACTGGCAATAAACTCCATATGCTTAGAATGAGGGATGAACTCCGAATGCCTAAGTCAAC
CCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCAGC
CTGATACCCTTCTGCATGCTGTCGATCTCA
Found at i:26514275 original size:26 final size:27
Alignment explanation
Indices: 26514239--26514293 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
26514229 CCGGTTCGAT
*
26514239 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGAATGGGGAATGAACTCCATATG
* *
26514265 CTTAGAATGGGGGGATGAACTCCGTATG
1 CTTAGAAT-GGGGAATGAACTCCATATG
26514293 C
1 C
26514294 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 7 0.29
28 17 0.71
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (27 bp):
CTTAGAATGGGGAATGAACTCCATATG
Found at i:26515502 original size:158 final size:157
Alignment explanation
Indices: 26515001--26515502 Score: 519
Period size: 158 Copynumber: 3.2 Consensus size: 157
26514991 GCTCCGTATG
* *
26515001 CTTAGACAT-GGAATGAACTCCGTATGCCCAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
26515065 CCGACTGGAAAGGCAGAATGCGCAAGCCGAGGATCGATCCGGTCCCCCCTACGTGCTGTCGATCC
65 CCGAC-GGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * *
26515130 CACTGCCATAA-CTTACGGTCT-GGTCTGAT
129 CACTGCCACAACCCT-CGGTCTAGCTC-GAT
** * * * * *
26515159 CTTAGACTGGGAATGAACTTTGTATGCATAAGTCAACCCACGAAACAAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * *
26515224 CGGCCGAAGAGGCATAATGCACAAGCCGAGGATCGACCC-AGTCCACCTCTGCGTGTTGTCGGTC
66 C-GACGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGA-TCC-CCCCTGCGTGCTGTCGATC
* * **
26515288 CCACTGCCACAACCCTCGGTCCAGCTGGGG
128 CCACTGCCACAACCCTCGGTCTAGCTCGAT
* * * * *
26515318 CTTAGAC-GTGGAATGAGCTCCCTATGCCTAAGCCAACCCGCGAAACGGGTGTACGGGCGCTCAG
1 CTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
26515382 CCAGTCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCT
65 CC-GACGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * *
26515447 TACTGCCGCAACCCTCGGTCTAGTTCGAT
129 CACTGCCACAACCCTCGGTCTAGCTCGAT
26515476 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
26515503 TTAGACTAGG
Statistics
Matches: 274, Mismatches: 61, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 149 0.54
159 119 0.43
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGACGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCCA
CTGCCACAACCCTCGGTCTAGCTCGAT
Found at i:26515520 original size:26 final size:26
Alignment explanation
Indices: 26515476--26515528 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26515466 CTAGTTCGAT
*
26515476 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
26515502 CTTAGACTAGGG-ATAAACTCCGTATG
1 CTTAGACT-GGGAATAAACTCCGTATG
26515528 C
1 C
26515529 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:26515873 original size:26 final size:26
Alignment explanation
Indices: 26515844--26515896 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26515834 CCGATCCGAT
* *
26515844 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26515870 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
26515896 C
1 C
26515897 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26516037 original size:368 final size:368
Alignment explanation
Indices: 26515285--26516059 Score: 995
Period size: 368 Copynumber: 2.1 Consensus size: 368
26515275 CGTGTTGTCG
* *
26515285 GTCCCACTGCCACAACCCTCGGTCCAGCTGGGGCTTAGACGTGGAATGAGCTCCCTATGCCTAAG
1 GTCCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAG
* * * * * *
26515350 CCAACCCGCGAAACGGGTGTACGGGCGCTCAGCCAGTCGGAGAGGCAGAATGTGCAAGTCGGGGA
66 CCAACCCACGAAACGAGCGTACGAGCGCTCAGACAGTCGGAGAGGCAGAATGTGCAAGTCAGGGA
* * * * *
26515415 TCGGCCCGATCCCCCCTGCGTGCTGTCGATCTTACTGCCGCAACCCTCGGTCTAGTTCGATCTTA
131 TCGGCCCGATCCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGATCGAGTCCGATCTTA
*
26515480 GACTGGGAATGAACTCCGTATGCTTAGACTAGGGATAAACTCCGTATGCCTAAGTCAACCCACAA
196 GACTGGGAATGAACTCCGTATGCTTAGACTAGGGATAAACTCCATATGCCTAAGTCAACCCACAA
* * * * * * * *
26515545 AATGAGTGTGCGAGCGTTCAGCCGGTCGGAGAGGCTGATCGAAGAGGCATAATGCGTAAGCCGGG
261 AATGAGCGTGCGAGCGCTCAACCGATCGGAGAGGCCGACCGAAGAGGCATAATGCGCAAGCCAGG
* ** * *
26515610 GATCAGCCTTATCCCCCTCTGCATGCTACTGATCCTGCTGCCA
326 GATCAACCCAATCCCCCTCTACATGCTACTGATCCCGCTGCCA
* * *
26515653 GTCCCACTGTCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGTA-CTCCGTATGCCTAA
1 GTCCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAA
* * *
26515717 GCCAAGCCATGAAACGAGCGTACGAGCGCTCA-ACAGGTCGGAGAGGTAGAATGTGCAAG-CTAG
65 GCCAACCCACGAAACGAGCGTACGAGCGCTCAGACA-GTCGGAGAGGCAGAATGTGCAAGTC-AG
* * * * *
26515780 GGATCGGTCTGATCCCCCCTACGTGCTGTCGATCCTGCTGTCGTAACCCTCGATCCGA-TCCGAT
128 GGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGAT-CGAGTCCGAT
* * *
26515844 CTTATACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCC
192 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATAAACTCCATATGCCTAAGTCAACCC
** *
26515909 ATGAAATGAGCGTGCGAGCGCTCAACCGATCGGAGAGGCCGACCGAAGAGGCATAATGTGCAAGC
257 ACAAAATGAGCGTGCGAGCGCTCAACCGATCGGAGAGGCCGACCGAAGAGGCATAATGCGCAAGC
* * *
26515974 CAGGGATCAACCCAATCCCCCTCTACGTGCT-TTCGATCCCGCTG-TA
322 CAGGGATCAACCCAATCCCCCTCTACATGCTACT-GATCCCGCTGCCA
** * *
26516020 GGTCCTGCTGCCACAACCCTCGGTCTGGCTAGGGCTTAGA
1 -GTCCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGA
26516060 GCTGCAGGCA
Statistics
Matches: 348, Mismatches: 53, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
367 5 0.01
368 340 0.98
369 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (368 bp):
GTCCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAG
CCAACCCACGAAACGAGCGTACGAGCGCTCAGACAGTCGGAGAGGCAGAATGTGCAAGTCAGGGA
TCGGCCCGATCCCCCCTACGTGCTGTCGATCCTACTGCCGCAACCCTCGATCGAGTCCGATCTTA
GACTGGGAATGAACTCCGTATGCTTAGACTAGGGATAAACTCCATATGCCTAAGTCAACCCACAA
AATGAGCGTGCGAGCGCTCAACCGATCGGAGAGGCCGACCGAAGAGGCATAATGCGCAAGCCAGG
GATCAACCCAATCCCCCTCTACATGCTACTGATCCCGCTGCCA
Done.