Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 275 of 402
Found at i:26516756 original size:159 final size:157
Alignment explanation
Indices: 26516403--26516897 Score: 494
Period size: 158 Copynumber: 3.1 Consensus size: 157
26516393 ATGCTACCGG
* * *
26516403 TCCCGCTACCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAGCTCCCG-ATGCCTAAG
1 TCCCGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAGCT-CCGTATGCCTAAG
* *
26516467 CCAACCCACGAAATGGGCATGCGGGCACTCAGCCGGCTGGAGAGGTAGAATGCGCAAGCCGGGGA
65 CCAACCCATGAAATGGGCATGCGGGCACTCAGCCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGA
* * * *
26516532 TTGACCAGGTCCCC-CTTGCGTGCTATCGA
130 TCGCCCA-ATCCCCTC-TGCGTGCTGTCGA
* ** * * ** * * * *
26516561 TCCTGCTGCTGCAACCCTTGGTCCGA-TCCGATCTTAGATAGGGAATGAACTCCGTATGCATAAG
1 TCCCGCTGCCACAACCCTCGGTCCGACT-AGGGCTTAGACATGGAATGAGCTCCGTATGCCTAAG
* * * * * * * * * * *
26516625 TCAAGCCATGAAACGAGCTTGTGGGCACTGAACCGG-TCGAAGAGGCATAATGCGCAAGCCGAGG
65 CCAACCCATGAAATGGGCATGCGGGCACTCAGCCGGCT-GGAGAGGCAGAATGCGCAAGCCGGGG
*
26516689 ATCAGCCCAATCCGCCTCTGCGTGCTGTCGG
129 ATC-GCCCAATCC-CCTCTGCGTGCTGTCGA
* *
26516720 TCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGC
1 TCCCGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAGCTCCGTATGCCTAAGC
* * * * *
26516785 CAATCCATGAAATGGGCGTGCGGGCACTCAGCCGGCTGGAGAGGCAGAACGTGCAAGCTGGGGAT
66 CAACCCATGAAATGGGCATGCGGGCACTCAGCCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGAT
* * *
26516850 CGACCCGATCCCCCCTGTGTGCTGTCGA
131 CG-CCCAATCCCCTCTGCGTGCTGTCGA
* *
26516878 TCCTGCTGCCGCAACCCTCG
1 TCCCGCTGCCACAACCCTCG
26516898 ATCTGGTCTG
Statistics
Matches: 264, Mismatches: 64, Indels: 18
0.76 0.18 0.05
Matches are distributed among these distances:
157 5 0.02
158 131 0.50
159 125 0.47
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (157 bp):
TCCCGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAGCTCCGTATGCCTAAGC
CAACCCATGAAATGGGCATGCGGGCACTCAGCCGGCTGGAGAGGCAGAATGCGCAAGCCGGGGAT
CGCCCAATCCCCTCTGCGTGCTGTCGA
Found at i:26516939 original size:26 final size:26
Alignment explanation
Indices: 26516910--26516962 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26516900 CTGGTCTGAT
*
26516910 CTTAGACT-GGAAATGAACTCTGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
*
26516936 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
26516962 C
1 C
26516963 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:26517307 original size:26 final size:26
Alignment explanation
Indices: 26517278--26517330 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26517268 CCGATCTGAT
*
26517278 CTTAGAGTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
26517304 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
26517330 C
1 C
26517331 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:26517309 original size:184 final size:185
Alignment explanation
Indices: 26517119--26517489 Score: 453
Period size: 184 Copynumber: 2.0 Consensus size: 185
26517109 TCCGGCTGGG
* * *
26517119 GCTTAGAC-GTGGAATGTACTCCGTATGCCTAAGCCAACCCAC-AAAATGAACGTGCGGGCGCTC
1 GCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAAT-AACATGCGAGCGCTC
* * * **
26517182 AATCGGTCGGAGAGGCAGAATGCGCAAGTCGAACATCGACTTGGTCCCCT-CTGCGTGCTGTCGA
64 AATCGATCGGAGAGGCAGAATGCACAAATCGAACATCGACCAGGTCCCCTCCTGCGTGCTGTCGA
* * *
26517246 TCTTACTG-CTACAACCCTCGATCCGATCTGATCTTAGAGTGGGAACGAACTCCGTAT
129 TCCTACTGTC-ACAACCCTCGATCCGACCTGATCTTAAAGTGGGAACGAACTCCGTAT
* * * * *
26517303 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCATGCGAGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAATAACATGCGAGCGCTCAA
* *** * *
26517368 TCGATCGGAGAGGTAGAATGCACAAATCGGGGATCGACCAGGTCCCCTCCTGTGTGTTGTCGATC
66 TCGATCGGAGAGGCAGAATGCACAAATCGAACATCGACCAGGTCCCCTCCTGCGTGCTGTCGATC
* * * *
26517433 CTACTGTCGCAACCCTTGATCCGACCTGATCTTAAAGTGGGAATGAACTCTGTAT
131 CTACTGTCACAACCCTCGATCCGACCTGATCTTAAAGTGGGAACGAACTCCGTAT
26517488 GC
1 GC
26517490 ATAAGTCAAA
Statistics
Matches: 157, Mismatches: 26, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
184 89 0.57
185 67 0.43
186 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.23
Consensus pattern (185 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAATAACATGCGAGCGCTCAA
TCGATCGGAGAGGCAGAATGCACAAATCGAACATCGACCAGGTCCCCTCCTGCGTGCTGTCGATC
CTACTGTCACAACCCTCGATCCGACCTGATCTTAAAGTGGGAACGAACTCCGTAT
Found at i:26517651 original size:26 final size:26
Alignment explanation
Indices: 26517622--26517673 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
26517612 CGGTCCAATT
26517622 TTAGACTAGGAATGAACTCCATATGC
1 TTAGACTAGGAATGAACTCCATATGC
* * * *
26517648 TTAGATTGGGGATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCATATGC
26517674 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGC
Found at i:26518026 original size:26 final size:26
Alignment explanation
Indices: 26517990--26518042 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26517980 CCAGTCTGAT
*
26517990 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
26518016 CTTAGACTGGGGATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
26518042 C
1 C
26518043 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:26519197 original size:26 final size:26
Alignment explanation
Indices: 26519156--26519208 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26519146 CCGATCCAAT
*
26519156 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26519182 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
26519208 C
1 C
26519209 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26519786 original size:356 final size:350
Alignment explanation
Indices: 26519323--26520320 Score: 1058
Period size: 356 Copynumber: 2.8 Consensus size: 350
26519313 TGCTAGTTTG
* * *
26519323 CTGCCACAACCCTTGGTTCGGCTAGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTAGGTTCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
* * * * * * *
26519388 CACGAAATGAGCATGTGGGAGCTCAGCCAGCCGGAGAGGCAGAATATGTAAGTC-AGGGATCGGC
66 CACGAAACGAACGTGTGGGA-CTCAGCCGGCTGGAGAGGCAGAATGTGTAAGTCGA-GGATCGAC
* * * * **
26519452 TCGATCCCCCTTGCGTGCTG-CTAAACCTGCTATCGCAACCCTTGATCCAATCTGATCTTAGACT
129 TCGATCCCCC-TGCGTGCTGTC-GATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACT
* * *
26519516 GGGAATGAACTCCGTATGCTTACACTAGGGATGAACTCCTATGCCTAAGTCAACCCATGAAATGA
192 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCTATGCCTAAGTCAACCCACGAAATGA
* * * *
26519581 GCGTACGGGCACTCAGCCGACCGGAAAGATCTGCCGAAAAGGCATAATGCGCAAGCC-AGGGATC
257 GCATGCGGGCGCTCAGCCGACC---AAGA------G---AGGCATAATGCACAAGCCGA-GGATC
*
26519645 AACCTGATCCCCCT-T-C-TGC-GT-G-CT-AC-CGATCCCA
309 AACCCGATCCCCCTCTACGTGCTGTCGACTCACTCGATCCCA
* *
26519679 CTGCCACAACCCTCGGTTCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
1 CTGCCACAACCCTAGGTTCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
* * * * * * * *
26519744 CACGAAACGAACGCGCGGGCACTTAGTCGGCTGGACAGGCAGAATGTGCAAGTCGATGATCGATT
66 CACGAAACGAACGTGTGGG-ACTCAGCCGGCTGGAGAGGCAGAATGTGTAAGTCGAGGATCGACT
* * *
26519809 TGATCCCCCCTGCGTGCTGTCGATCCTGCTACCACAACCCTCGATCTGGTCTGATCTTAGACTGG
130 CGAT-CCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGG
* * *
26519874 GAATGAACTCTGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGCCAACCCACG-AATCGA
194 GAATGAACTCCGTATGCTTAGACTGGGGATGAAC-TCCTATGCCTAAGTCAACCCACGAAAT-GA
* * * * * *
26519938 GCATGCGGGTGCTCAACC-AACAAGAGAGGCATAATGCACAAGTCGAGGATCAGCCCGGTCCCCC
257 GCATGCGGGCGCTCAGCCGACCAAGAGAGGCATAATGCACAAGCCGAGGATCAACCCGATCCCCC
* * *
26520002 TCTACGTGCTGTCGATCTCGCTGTCGGTCCTA
322 TCTACGTGCTGTCGA-CTCAC--TCGATCCCA
* *
26520034 CTGCCACAACCGTAGG-TCTGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAAC
1 CTGCCACAACCCTAGGTTC-GGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAAC
* * * *
26520098 CCATGAAACAAACGTGTGGGTGCTCAGCCGG-TCGGAGAGGCAGAATGCGTAAGTCGAGGATCGA
65 CCACGAAACGAACGTGTGGG-ACTCAGCCGGCT-GGAGAGGCAGAATGTGTAAGTCGAGGATCGA
* * * * * *
26520162 CCCGGTCACCCCTACGTGCTGTCGATCCTGCTGCCGCAACGCTCGATCCGGTCCGATCTTAGACT
128 CTCGATC-CCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACT
*
26520227 GGGAATGAAC-CCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
192 GGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCC-TATGCCTAAGTCAACCCACGAAATG
26520291 AGCATGCGGGCGCTCAGCCGACC-AGAGAGG
256 AGCATGCGGGCGCTCAGCCGACCAAGAGAGG
26520321 GATGATCTTC
Statistics
Matches: 537, Mismatches: 81, Indels: 50
0.80 0.12 0.07
Matches are distributed among these distances:
344 32 0.06
345 2 0.00
346 1 0.00
347 4 0.01
348 2 0.00
349 1 0.00
351 2 0.00
352 1 0.00
353 6 0.01
354 72 0.13
355 180 0.34
356 191 0.36
357 43 0.08
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (350 bp):
CTGCCACAACCCTAGGTTCGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACC
CACGAAACGAACGTGTGGGACTCAGCCGGCTGGAGAGGCAGAATGTGTAAGTCGAGGATCGACTC
GATCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACTGGGGATGAACTCCTATGCCTAAGTCAACCCACGAAATGAGCAT
GCGGGCGCTCAGCCGACCAAGAGAGGCATAATGCACAAGCCGAGGATCAACCCGATCCCCCTCTA
CGTGCTGTCGACTCACTCGATCCCA
Found at i:26519893 original size:26 final size:26
Alignment explanation
Indices: 26519864--26519916 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26519854 CTGGTCTGAT
26519864 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
26519890 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
26519916 C
1 C
26519917 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:26520182 original size:355 final size:354
Alignment explanation
Indices: 26519075--26520320 Score: 966
Period size: 356 Copynumber: 3.5 Consensus size: 354
26519065 ACCGAAGAGA
* * * * * ** *
26519075 CAGAATACGCATGTCGAGGATC-AGCCCGGTC-CCCTCTGCGTGCTGTCGATCCTACGGCCGCAA
1 CAGAATGCGCAAGTCGAGGATCGA-CCCGATCACCC-CTACGTGCTGTCGATCCTGCTACCACAA
* * * * *
26519138 CCCTTGATCCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGAGATGAACTCC
64 CCCTCGATCCGGTCCGATCTTAGACTGGGAATGAAC-CCGTATGCTTAGACTGGGGATGAACTCC
** * * * * * ** *
26519203 GTATGCCTAAGTTAACCCATGAAACGAGCGTACAGGCACTCAACCGGTC--G-GAAG-ATTAATG
128 GTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACC-AACAAGAGAGGCA-TAATG
** * ** * * * * * * * *
26519264 CGTAAGTCG-GGTATCAG-CAGGTCCTTCTACTGCATGCCGTCAATCCCGCTG-CTAGT-TTGCT
191 CACAAGTCGAGG-ATCAGCCCGGTCCCCCT-CTACGTGCTGTCGATCTCGCTGTC-GGTCCTACT
* * * **
26519325 GCCACAACCCTTGGTTCGGCTAGGGCTTAGATGTGGAATGTACTCCGTATGCCTAAGCCAACCCA
253 GCCACAACCCTAGGTTCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCA
** * ** * * * *
26519390 CGAAATGAGCATGTGGG-AGCTCAGCCAGCCGGAGAGG
318 CGAAACAAACGCGCGGGCA-CTCAGCCGGCTGGACAGG
** * * * * * * * *
26519427 CAGAATATGTAAGTC-AGGGATCGGCTCGATC-CCCCTTGCGTGCTG-CTAAACCTGCTATCGCA
1 CAGAATGCGCAAGTCGA-GGATCGACCCGATCACCCC-TACGTGCTGTC-GATCCTGCTACCACA
* ** * * *
26519489 ACCCTTGATCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTACACTAGGGATGAACTC
63 ACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAAC-CCGTATGCTTAGACTGGGGATGAACTC
* * * * * * * *
26519554 C-TATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCACTCAGCCGACCGGAAAGATCTGCCGA
127 CGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACC-AAC---AAGA------G-
* * * * * *
26519618 AAAGGCATAATGCGCAAG-CCAGGGATCAACCTGATCCCCCT-T-C-TGC-GT-G--CT-AC---
181 --AGGCATAATGCACAAGTCGA-GGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCTCGCTGT
* * * *
26519671 CGATCCCACTGCCACAACCCTCGGTTCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTA
243 CGGTCCTACTGCCACAACCCTAGGTTCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTA
* * *
26519736 AGCCAACCCACGAAACGAACGCGCGGGCACTTAGTCGGCTGGACAGG
308 AGCCAACCCACGAAACAAACGCGCGGGCACTCAGCCGGCTGGACAGG
* * *** * *
26519783 CAGAATGTGCAAGTCGATGATCGATTTGATCCCCCCTGCGTGCTGTCGATCCTGCTACCACAACC
1 CAGAATGCGCAAGTCGAGGATCGACCCGATCACCCCTACGTGCTGTCGATCCTGCTACCACAACC
* * * *
26519848 CTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTTCGT
66 CTCGATCCGGTCCGATCTTAGACTGGGAATGAAC-CCGTATGCTTAGACTGGGGATGAACTCCGT
* *
26519913 ATGCCTAAGCCAACCCACGAATCGAGCATGCGGGTGCTCAACCAACAAGAGAGGCATAATGCACA
130 ATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCAACAAGAGAGGCATAATGCACA
26519978 AGTCGAGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCTCGCTGTCGGTCCTACTGCCACAA
195 AGTCGAGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCTCGCTGTCGGTCCTACTGCCACAA
* * *
26520043 CCGTAGG-TCTGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCATGAAAC
260 CCCTAGGTTC-GACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAAC
* * ** *
26520107 AAACGTGTGGGTGCTCAGCCGG-TCGGAGAGG
324 AAACGCGCGGGCACTCAGCCGGCT-GGACAGG
* * * * *
26520138 CAGAATGCGTAAGTCGAGGATCGACCCGGTCACCCCTACGTGCTGTCGATCCTGCTGCCGCAACG
1 CAGAATGCGCAAGTCGAGGATCGACCCGATCACCCCTACGTGCTGTCGATCCTGCTACCACAACC
26520203 CTCGATCCGGTCCGATCTTAGACTGGGAATGAACCCGTATGCTTAGACTGGGGATGAACTCCGTA
66 CTCGATCCGGTCCGATCTTAGACTGGGAATGAACCCGTATGCTTAGACTGGGGATGAACTCCGTA
* * * *
26520268 TGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGACCAGAGAGG
131 TGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCAACAAGAGAGG
26520321 GATGATCTTC
Statistics
Matches: 725, Mismatches: 126, Indels: 84
0.78 0.13 0.09
Matches are distributed among these distances:
344 31 0.04
345 3 0.00
346 1 0.00
347 4 0.01
348 2 0.00
349 1 0.00
351 47 0.06
352 103 0.14
353 4 0.01
354 79 0.11
355 178 0.25
356 193 0.27
357 42 0.06
358 1 0.00
359 1 0.00
362 2 0.00
363 4 0.01
364 1 0.00
365 2 0.00
366 16 0.02
367 10 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (354 bp):
CAGAATGCGCAAGTCGAGGATCGACCCGATCACCCCTACGTGCTGTCGATCCTGCTACCACAACC
CTCGATCCGGTCCGATCTTAGACTGGGAATGAACCCGTATGCTTAGACTGGGGATGAACTCCGTA
TGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCAACAAGAGAGGCATAATGCACAA
GTCGAGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCTCGCTGTCGGTCCTACTGCCACAAC
CCTAGGTTCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAACAA
ACGCGCGGGCACTCAGCCGGCTGGACAGG
Found at i:26520253 original size:25 final size:26
Alignment explanation
Indices: 26520219--26520270 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
26520209 CCGGTCCGAT
26520219 CTTAGACTGGGAATGAAC-CCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26520244 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26520270 C
1 C
26520271 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26521457 original size:26 final size:26
Alignment explanation
Indices: 26521407--26521459 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26521397 CCGATTCGAT
*
26521407 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
26521433 CTTAGACTGGGGATGAAC-ACCGTATG
1 CTTAGACTGGGAATGAACTA-CGTATG
26521459 C
1 C
26521460 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:26521812 original size:26 final size:26
Alignment explanation
Indices: 26521776--26521828 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26521766 CCGATCCGAT
26521776 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
26521802 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
26521828 C
1 C
26521829 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:26522001 original size:356 final size:360
Alignment explanation
Indices: 26521213--26522219 Score: 1112
Period size: 356 Copynumber: 2.8 Consensus size: 360
26521203 CTGCATGCTA
* * * *
26521213 CCGGTCCCACTGCCACAACCCTTGATCCAACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCC
1 CCGGTCCTACTGCCACAACCCTAGATCCGACTGGGGCTTAGACATGGAATGTA-CTCCGTATGCC
* * *
26521277 TAAAC-T-AACCCACGAAATGGGCGTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGT
65 T--ACGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGAAAGT
*
26521340 CGGGGATCGGCCC-AGTCCCCC--CTGTG-TGCTGTTGATCCTGCTGCTC-CAACCCTCGATCCG
128 CGGGGATCGACCCGA-TCCCCCTAC-GTGCT-CTGTT--TCCTGCTGC-CGCAA-CCTCGATCCG
* * *
26521400 ATTCGATCTTAGACTGGGAATGAACTATGTATGCTTAGACTGGGGATGAACACCGTATGCCTAAG
186 ATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
* * * *
26521465 TTAACCCATGAAACGAGCGTGTGGGCGCTCAGGCAGCCGAAGAGGTCGATCGGAGAGGCATAATG
251 TCAACCCACGAAACGAGCGTGCGGGCGCTCA-G-AGCC-AAGA-G-CGA-CAGAGAGGCATAATG
* * *
26521530 CATAAGTCGAGGATCAGCTCGATCCCCTTCTACGTGCCACCAATCCCACTG
310 CACAAGTCGAGGATCAGCCCGATCCCCCTCTACGTGCCACCAATCCCACTG
* * * * **
26521581 CCGGTCCTGCTGCCACAACCCTCGATCCGACTGAGACTTAGATGTGGAATGTACTCCGTATGCCT
1 CCGGTCCTACTGCCACAACCCTAGATCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCT
* * * * * *
26521646 ACGTCAACCCGCGAAATGAGCGTACAGGCACTCAGGCGACCAGAGAGGCAGAATGCGAAAGTCGG
66 ACGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGAAAGTCGG
26521711 GGATCGACCCGATCCCCTCTACGTGCTACTGTTTCCTGCTGCCGCAACCTTCGATCCGATCCGAT
131 GGATCGACCCGATCCCC-CTACGTGCT-CTGTTTCCTGCTGCCGCAACC-TCGATCCGATCCGAT
* *
26521776 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGCCAACCC
193 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
* * *
26521841 ACGAATCGAGCATGCGGGTGCTCA-A-CC-A-A-C-A-AGAGAGGCATAATGCACAAGTCGAGGA
258 ACGAAACGAGCGTGCGGGCGCTCAGAGCCAAGAGCGACAGAGAGGCATAATGCACAAGTCGAGGA
* *** * * *
26521899 TCAGCCCGGTCCCCCTCTACGTGCTGTCGATCTCGCTG
323 TCAGCCCGATCCCCCTCTACGTGCCACCAATCCCACTG
* * * * *
26521937 TCGGTCCTACTGCCACAACCGTAGGTCTGGCTGGGGCTTAGACATGGAATGTACTCCGTATGCCT
1 CCGGTCCTACTGCCACAACCCTAGATCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCT
* * * ** * * * * * * *
26522002 AAGCCAACCCATGAAACAAACGTGTGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCGTAAGTCGA
66 ACGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGAAAGTCGG
* * * *
26522067 GGATCGACCCGGTCACCCCTACGTGCTGTCG-ATCCTGCTGCCGCAACGCTCGATCCGGTCCGAT
131 GGATCGACCCGATC-CCCCTACGTGCTCT-GTTTCCTGCTGCCGCAAC-CTCGATCCGATCCGAT
*
26522131 CTTAGACTGGGAATGAAC-CCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
193 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
*
26522195 ACGAAACGAGCGTGCGGGCGATCAG
258 ACGAAACGAGCGTGCGGGCGCTCAG
26522220 TCAAGTAAAG
Statistics
Matches: 544, Mismatches: 81, Indels: 41
0.82 0.12 0.06
Matches are distributed among these distances:
354 63 0.12
355 48 0.09
356 179 0.33
357 3 0.01
358 1 0.00
359 1 0.00
362 1 0.00
363 1 0.00
365 2 0.00
366 3 0.01
367 1 0.00
368 123 0.23
369 108 0.20
370 3 0.01
371 7 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (360 bp):
CCGGTCCTACTGCCACAACCCTAGATCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCT
ACGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGAAAGTCGG
GGATCGACCCGATCCCCCTACGTGCTCTGTTTCCTGCTGCCGCAACCTCGATCCGATCCGATCTT
AGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGGCGCTCAGAGCCAAGAGCGACAGAGAGGCATAATGCACAAGTCGAGGATCA
GCCCGATCCCCCTCTACGTGCCACCAATCCCACTG
Found at i:26522165 original size:25 final size:26
Alignment explanation
Indices: 26522131--26522182 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
26522121 CCGGTCCGAT
26522131 CTTAGACTGGGAATGAAC-CCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26522156 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26522182 C
1 C
26522183 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26523228 original size:159 final size:157
Alignment explanation
Indices: 26522865--26523367 Score: 467
Period size: 158 Copynumber: 3.2 Consensus size: 157
26522855 AGCTCCGTAT
*
26522865 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGACGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAG
* * * * * * *
26522930 TCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATC-GACCTGATCCCCCCTGCGTGCTATCAATC
66 CCGGCCAGAGAGGCAAAATGCGCAAGCCAGGGATCAG-CC-GGTCCCCTCTGCGTGCTATCAATC
** * * *
26522994 CTGCTGCCGCAACCCTTGGTCTGGTCCGA
129 CCACTACCACAACCCTCGGTCTGGTCCGA
* * * * * *
26523023 TCTTAGA-TTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGAGTGCGGACGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCA
* * * * **
26523087 GCCGGCCAAAGAGGCATAATGTGCAAGCCAGGGATCAGTCCGGTCCCCTTCTGCGTGCTGTCGGT
65 GCCGGCCAGAGAGGCAAAATGCGCAAGCCAGGGATCAG-CCGGTCCCC-TCTGCGTGCTATCAAT
** *
26523152 CCCACTACCACAACCCTCGGT-TCGGTTGGG
128 CCCACTACCACAACCCTCGGTCT-GGTCCGA
** * * * * *
26523182 GCTTAGACATGGAATGGGCTCCCTATGCCTAAATCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAG
** * * * *
26523247 CTAGCCAGAGAGGCAAAATGCGTAAGCCAGGGATCAGCACGGTCCCCTCTGCGTGCTACCGATCT
66 CCGGCCAGAGAGGCAAAATGCGCAAGCCAGGGATCAGC-CGGTCCCCTCTGCGTGCTATCAATCC
* * * *
26523312 TACTGCCGCAACCCTCAGTCCT-GTCCGA
130 CACTACCACAACCCTCGGT-CTGGTCCGA
* *
26523340 TCTTAGA-TTGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
26523368 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 63, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 145 0.53
159 124 0.45
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAG
CCGGCCAGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCGGTCCCCTCTGCGTGCTATCAATCCC
ACTACCACAACCCTCGGTCTGGTCCGA
Found at i:26523370 original size:26 final size:26
Alignment explanation
Indices: 26523341--26523393 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26523331 CCTGTCCGAT
* *
26523341 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
26523367 CTTAGACTGGGGACGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
26523393 C
1 C
26523394 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:26523738 original size:26 final size:26
Alignment explanation
Indices: 26523709--26523761 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26523699 CCGATCTGAT
* *
26523709 CTTAGATTGGAAATGACCTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
26523735 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
26523761 C
1 C
26523762 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:26523828 original size:368 final size:367
Alignment explanation
Indices: 26523270--26523962 Score: 887
Period size: 368 Copynumber: 1.9 Consensus size: 367
26523260 CAAAATGCGT
* * *
26523270 AAGCCAGGGATCAGCACGGTCCCCTCTGCGTGCTACCGATCTTACTGCCGCAACCCTCAGTCCTG
1 AAGCCAGGGATCAGCACGGTCCCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCAGTCCTG
* *
26523335 TCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGACGAACTCTGTATGCCTAAGT
66 TCCGATCTTAGATTGGAAATGAACTCCGTATGCTTAGACTGGGGACGAACTCCGTATGCCTAAGT
* * * * *
26523400 CAACCCACGAAACGAACGTGCAGGCGCTCAGCCGATCGGAGAGGTAGGCTGGAGAGGCATAATGC
131 CAACCCACGAAACGAACGTGCAGGCGCTCAGCCAATCGGAGAGGCAGACCGGAAAGGCATAATGC
** * * *
26523465 GTAAGTCAG-GGTTCAGCCC-AGTCCCCCTCTGCATGTTGTCGATCCCGCTGTCGGTCCTGCTGC
196 ACAAG-CAGAGGATCAGCCCGA-TCCCCCTCTGCATGCTGTCGATCCCGC-GCCGGTCCTGCTGC
* * * * **
26523528 CACTACCCTCGGTACAG-CTGGGGCTTAGACGTGGATTGTACTATGTATGCCTAAGCCAACCCAT
258 CACAACCCTCGGT-CAGACTGGGGCTTAGACGCGAAATGTACTACATATGCCTAAGCCAACCCAT
26523592 GAAATAAGCGTACGAGCACTCAGTCAGTCGGAGAGGTAGAATGCAC
322 GAAATAAGCGTACGAGCACTCAGTCAGTCGGAGAGGTAGAATGCAC
* * * *
26523638 AAGCCAGGGATCGGCTA-GGTCCCCCCTGCGTGCTGCCGATCCTGCTACCGTAACCCTC-GATCC
1 AAGCCAGGGATCAGC-ACGGTCCCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCAG-TCC
* * *
26523701 -GATCTGATCTTAGATTGGAAATGACCTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTA
64 TG-TCCGATCTTAGATTGGAAATGAACTCCGTATGCTTAGACTGGGGACGAACTCCGTATGCCTA
* * * * *
26523765 AGTCAACCCACGAAACGAGCGTGC-GAGTGCTCATCCAATCGTAGAGGCCGACCGGAAAGGCATA
128 AGTCAACCCACGAAACGAACGTGCAG-GCGCTCAGCCAATCGGAGAGGCAGACCGGAAAGGCATA
* ** *
26523829 ATGCACAAGCCGAGGATCAGCCCGATCCCCCTCTGTGTGCTGTCGATCTCGCGCCGGTCCTGCTG
192 ATGCACAAGCAGAGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCCCGCGCCGGTCCTGCTG
* * * * *
26523894 CCACAACCCTCGGTCCGATTGGGGCTTAGATGCGAAATGTACTCCATATGCCTTAGCCAACCCAT
257 CCACAACCCTCGGTCAGACTGGGGCTTAGACGCGAAATGTACTACATATGCCTAAGCCAACCCAT
26523959 GAAA
322 GAAA
26523963 CGAGAGTGCG
Statistics
Matches: 276, Mismatches: 42, Indels: 15
0.83 0.13 0.05
Matches are distributed among these distances:
366 2 0.01
367 72 0.26
368 200 0.72
369 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (367 bp):
AAGCCAGGGATCAGCACGGTCCCCCCTGCGTGCTACCGATCCTACTACCGCAACCCTCAGTCCTG
TCCGATCTTAGATTGGAAATGAACTCCGTATGCTTAGACTGGGGACGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAACGTGCAGGCGCTCAGCCAATCGGAGAGGCAGACCGGAAAGGCATAATGC
ACAAGCAGAGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCCCGCGCCGGTCCTGCTGCCAC
AACCCTCGGTCAGACTGGGGCTTAGACGCGAAATGTACTACATATGCCTAAGCCAACCCATGAAA
TAAGCGTACGAGCACTCAGTCAGTCGGAGAGGTAGAATGCAC
Found at i:26525015 original size:159 final size:159
Alignment explanation
Indices: 26524683--26525125 Score: 475
Period size: 159 Copynumber: 2.8 Consensus size: 159
26524673 AGCTCCACAT
* *
26524683 GCTTAGAAATGGAATGAACTTCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCATATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * **
26524748 TCGGCCGAAGAGGCAGAATGCGCAAGCC-AGGGATCGACCCGGTCCACCCT-GGCGTGCTGTAGA
66 CCGGTCGAAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGGTCC-CCCTCTGCGTGCTGCCGA
* ** * *
26524811 TCCTGCTGTCGTAACCCTCAATCTGATCCGA
129 TCCTGCTGCCACAAACCTCAATCGGATCCGA
* * * *
26524842 TCTTA-ATC-TGGGAATGAACTTCATATGCATAAGTTAACCCACGAAACGAGCGTGCGGGCGCTG
1 GCTTAGA-CAT-GGAATGAACTTCATATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTC
* * * *
26524905 AGCCGGTCGAAGAGGCATATTGCGTAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGG
64 AGCCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGA
** * * *
26524970 TCCTGCTGCCACAAACCTCGGTTCGGCT-GGG
129 TCCTGCTGCCACAAACCTC-AATCGGATCCGA
* * * * *
26525001 GCTTAGACATGGAATGATCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCATATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** *
26525066 CCGGTCGGAGAGGCAGAATGCGCAAGCTGAAGATCGGTCCGGTCCCCC-CTCCGTGCTGCC
66 CCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGCC
26525126 ATAACCCTCA
Statistics
Matches: 234, Mismatches: 43, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
158 17 0.07
159 210 0.90
160 7 0.03
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTTCATATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGATC
CTGCTGCCACAAACCTCAATCGGATCCGA
Found at i:26525197 original size:26 final size:26
Alignment explanation
Indices: 26525148--26525198 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
26525138 CTGGTCTGAT
* * *
26525148 CTTAGATTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26525174 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
26525199 TCCTATGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26531054 original size:26 final size:26
Alignment explanation
Indices: 26531025--26531077 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26531015 CCGGTTTGAT
26531025 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26531051 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26531077 C
1 C
26531078 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26532326 original size:159 final size:158
Alignment explanation
Indices: 26531776--26532394 Score: 638
Period size: 159 Copynumber: 3.9 Consensus size: 158
26531766 TCCGTATGCT
* * * *
26531776 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGGGCGGGCGCTCAGTCG
1 TAGACATGGAATGAACCCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * *
26531841 ACCGGAA-AGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTGTGTGCTGTC-AGTCC
66 ATC-GAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGA-TCC
* * *
26531904 CGCTGCCACAACCCTCGATACGACTGGGGCA
128 CGCTGCCACAACCCTCGGTACTACTAGGGCA
* *
26531935 TAGACATGGAATGAGCCCCCTATGCCTAAGCCAACCGACGAAACG-GACGTGCGGGCGCTCAGTC
1 TAGACATGGAATGAACCCCCTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCAGTC
* * * * * *
26531999 GGTCGAAGAGGCAAAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTG
65 GATCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCCG
* * ** * ** *
26532064 CTGCCTCAACCCTTGGT-CTGGTTTGATCT
130 CTGCCACAACCCTCGGTACT-ACTAGGGCA
* * ** * * * * *
26532093 TAGA-TTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAG-C
1 TAGACAT-GGAATGAACCCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC
* * * * * * *
26532156 TGGTCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCATACTGTCGGTCC
65 -GATCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGATCC
*
26532221 CACTGCCACAACCCTCGGTACTACTAGGGCA
128 CGCTGCCACAACCCTCGGTACTACTAGGGCA
* * * *
26532252 TAGACATGGAATGAGCCCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGGGCTCAGTCG
1 TAGACATGGAATGAACCCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * * * *
26532317 ATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTGC
66 ATCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCCGC
*
26532382 TGCCGCAACCCTC
131 TGCCACAACCCTC
26532395 AGTCCGATCT
Statistics
Matches: 369, Mismatches: 80, Indels: 23
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 151 0.41
159 211 0.57
160 4 0.01
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
TAGACATGGAATGAACCCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
ATCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCCGC
TGCCACAACCCTCGGTACTACTAGGGCA
Found at i:26532359 original size:317 final size:317
Alignment explanation
Indices: 26531774--26532426 Score: 871
Period size: 317 Copynumber: 2.1 Consensus size: 317
26531764 GCTCCGTATG
* * *
26531774 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGGGCGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGGACGGGCGCTCAG
* ** *
26531838 TCGACCGGAAAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTGTGTGCTGTCAGTC
65 TCGACCGGAAAGGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTGCATACTGTCAGTC
* *
26531903 CCGCTGCCACAACCCTCGATACGACTGGGGCATAGACATGGAATGAGCCCCCTATGCCTAAGCCA
130 CCACTGCCACAACCCTCGATACGACTAGGGCATAGACATGGAATGAGCCCCCTATGCCTAAGCCA
* * * *
26531968 ACCGACGAAACGGACGTGCGGGCGCTCAGTCGGTCGAAGAGGCAAAATGCGCAAGCTGGGGATCG
195 ACCCACGAAACGGACGTGCGGGCGCTCAGTCGATCGAAGAGGCAAAATGCGCAAGCCGAGGATCG
* * ** * * *
26532033 GCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCTCAACCCTTGGTCTGGTTTGAT
260 ACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGATCTGAT
* * * * * * *
26532091 CTTAGATTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAG-
1 CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGGACGGGCGCTCAGT
** * ** *
26532155 CTGGTC-GAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCATACTGTCGGT
66 C-GACCGGAA-AGGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTGCATACTGTCAGT
* *
26532219 CCCACTGCCACAACCCTCGGTACTACTAGGGCATAGACATGGAATGAGCCCCCTATGCCTAAGCC
129 CCCACTGCCACAACCCTCGATACGACTAGGGCATAGACATGGAATGAGCCCCCTATGCCTAAGCC
* * * * * *
26532284 AACCCATGAAACGGGCGTGCGGGGGCTCAGTCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATC
194 AACCCACGAAACGGACGTGCGGGCGCTCAGTCGATCGAAGAGGCAAAATGCGCAAGCCGAGGATC
* *
26532349 GACTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCGATCTGAT
259 GACCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGATCTGAT
26532408 CTTAGACTAGGAATGAACT
1 CTTAGACTAGGAATGAACT
26532427 TCATATGCTT
Statistics
Matches: 288, Mismatches: 45, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
316 4 0.01
317 284 0.99
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (317 bp):
CTTAGACTAGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGGACGGGCGCTCAGT
CGACCGGAAAGGCATAATGCGCAAGCCGGGGATCAACCCGATCCCCCTCTGCATACTGTCAGTCC
CACTGCCACAACCCTCGATACGACTAGGGCATAGACATGGAATGAGCCCCCTATGCCTAAGCCAA
CCCACGAAACGGACGTGCGGGCGCTCAGTCGATCGAAGAGGCAAAATGCGCAAGCCGAGGATCGA
CCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGATCTGAT
Found at i:26532459 original size:26 final size:26
Alignment explanation
Indices: 26532408--26532460 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26532398 CCGATCTGAT
*
26532408 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
26532434 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
26532460 C
1 C
26532461 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:26532515 original size:13 final size:13
Alignment explanation
Indices: 26532497--26532521 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26532487 TGGGTGCTCA
26532497 ACCGATCGGAGAC
1 ACCGATCGGAGAC
26532510 ACCGATCGGAGA
1 ACCGATCGGAGA
26532522 GGCATAATGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.28, G:0.32, T:0.08
Consensus pattern (13 bp):
ACCGATCGGAGAC
Found at i:26532817 original size:26 final size:26
Alignment explanation
Indices: 26532776--26532828 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26532766 CCGGTCTGAT
26532776 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26532802 CTTAGACTGAGG-ATGAACTCTATATG
1 CTTAGACTG-GGAATGAACTCCATATG
26532828 C
1 C
26532829 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26533888 original size:26 final size:26
Alignment explanation
Indices: 26533852--26533901 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
26533842 CCTGTCTAAT
26533852 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
26533878 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
26533902 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:26534614 original size:26 final size:26
Alignment explanation
Indices: 26534575--26534627 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26534565 GGCACAAAAT
*
26534575 CTTAGACTGAGAATGAGCTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
26534601 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
26534627 C
1 C
26534628 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:26536297 original size:26 final size:26
Alignment explanation
Indices: 26536256--26536308 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26536246 CCAGTCTGAT
*
26536256 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26536282 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
26536308 C
1 C
26536309 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26536954 original size:368 final size:355
Alignment explanation
Indices: 26536132--26537070 Score: 1107
Period size: 368 Copynumber: 2.6 Consensus size: 355
26536122 AAATCTTAGG
* * * * *
26536132 CAACCCATGAAACGAGC-ATGCAGGTGCTCAGTCGGCCAGAGTGGTAGAATGTGCAAGCCGGGGA
1 CAACCCATGAAACGAGCGA-GCGGGTGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCC-GGGA
* ** * * * * *
26536196 TCAGCTCGATCCCCCTGCATGCTG-TCGATCCTACTGTCGCAACCCTTGGTCCAGTCTGATCTTA
64 TCAGCCCGATCCCCAAGCGTGCTGCT-GATCCTGCTGCCGCAACCCTCGATCCAGTCTGATCTTA
*
26536260 GACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCATATGCCTAAGTCAACCCATGA
128 GACT-GGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGA
* ** * * * *
26536325 AATGAGTATGCGGGCGCTCAGCCGGCCGGTCGAAAAGGCATAATGCGCAAGTCGGGGATCAACCT
192 AACGAGCGTGCGGGCGCTCAGCCGGCCGGTCGAAAAGGCACAATGCGCAAGCCGAGGATCAACCC
* * * *
26536390 AGGCCTCCTCTACGTGCTGTCAATCCCGCTACCGATCCTATGCCACAACCCCCAGTCCGGCTGGG
257 AGCCCCCCTCTACGTGCTGTCAATCCCACTACCGATCCTATGCCACAACCCCCAGTCCGGCTGAG
26536455 GCTTAGACATGGAATGTACTCCATATGCCTAAGC
322 GCTTAGACATGGAATGTACTCCATATGCCTAAGC
* * * * *
26536489 CAACCCATGAAACGAGCGTGTGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCTGAGGAT
1 CAACCCATGAAACGAGCGAGCGGGTGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCG-GGAT
* * * * * * *
26536554 CGGCCCGGTCTCCCCTA-TGTGCTACCGATCCTGCTGCCGCAACCCTCAATCCAGTCTGATCTTA
65 CAGCCC-G-ATCCCCAAGCGTGCTGCTGATCCTGCTGCCGCAACCCTCGATCCAGTCTGATCTTA
* *
26536618 GATTAGGAATGAACTCCGTATGCTTAGACCAGGGATGAACTCCGTATGCCTAAGTCAACCCATGA
128 GACT-GGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGA
* * * *
26536683 AACGAGCGTGTGGGCGCTTAGCCGGCTGGAGAGGCCGGTCGGAGAGGCACAAT-CTGCAAGCCGA
192 AACGAGCGTGCGGGCGCTCAG-C--C------GGCCGGTCGAAAAGGCACAATGC-GCAAGCCGA
* * * *
26536747 GGATCAGCCCAGCCCCCCTCTACGTGCTGTCAATCCCACTACCGGTCCTCCTGCCACAACCCTC-
247 GGATCAACCCAGCCCCCCTCTACGTGCTGTCAATCCCACTACCGATCCT-ATGCCACAACCCCCA
*
26536811 GATCCGGCTGAGGCTTAGACATGGAATGTACTCCGTATGCCTTAA-C
311 G-TCCGGCTGAGGCTTAGACATGGAATGTACTCCATATGCC-TAAGC
* *
26536857 CAACCCAAGAAACGAGCGAGCGGGTGCTCAATCGGCCGGAGAGGCAGAATGCGCAAGCCGGTGAT
1 CAACCCATGAAACGAGCGAGCGGGTGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCGG-GAT
* * * * *
26536922 CAGCCCGATCCTTCAAGCGTACTGCTGATCCTGCTACCGTAACCCTCGATCCAGTCCGATCTTAG
65 CAGCCCGATCC-CCAAGCGTGCTGCTGATCCTGCTGCCGCAACCCTCGATCCAGTCTGATCTTAG
* *
26536987 ACTGAGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
129 ACTG-GAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
26537052 ACGAGCGTGCGGGCGCTCA
193 ACGAGCGTGCGGGCGCTCA
26537071 ACCGAGCAGA
Statistics
Matches: 487, Mismatches: 73, Indels: 33
0.82 0.12 0.06
Matches are distributed among these distances:
356 1 0.00
357 56 0.11
358 115 0.24
359 6 0.01
361 1 0.00
366 4 0.01
367 74 0.15
368 227 0.47
369 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (355 bp):
CAACCCATGAAACGAGCGAGCGGGTGCTCAGTCGGCCGGAGAGGCAGAATGCGCAAGCCGGGATC
AGCCCGATCCCCAAGCGTGCTGCTGATCCTGCTGCCGCAACCCTCGATCCAGTCTGATCTTAGAC
TGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
AGCGTGCGGGCGCTCAGCCGGCCGGTCGAAAAGGCACAATGCGCAAGCCGAGGATCAACCCAGCC
CCCCTCTACGTGCTGTCAATCCCACTACCGATCCTATGCCACAACCCCCAGTCCGGCTGAGGCTT
AGACATGGAATGTACTCCATATGCCTAAGC
Found at i:26537023 original size:26 final size:26
Alignment explanation
Indices: 26536982--26537034 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26536972 CCAGTCCGAT
*
26536982 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
26537008 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
26537034 C
1 C
26537035 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:26539354 original size:26 final size:26
Alignment explanation
Indices: 26539302--26539354 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26539292 CCGATCTAAT
**
26539302 CTTAGACTGGGAATGAACTTTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
26539328 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
26539354 C
1 C
26539355 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:26540450 original size:157 final size:155
Alignment explanation
Indices: 26539955--26540469 Score: 484
Period size: 158 Copynumber: 3.3 Consensus size: 155
26539945 GCCCAGCACA
* * *
26539955 TGGAATGAACTCTGTATGCCTAAGCCAGCCCACGAAATGAGCGTGCAGGCGCTCAGCAGGTCGAA
1 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGC-GGCCGAA
* * *
26540020 GAGGCAGAATGC-TCAAGCCGGGGATCGACCTGATCCCCCCTGCATGCTGTCGATCCTG-TCGCC
65 GAGGCAAAATGCGT-AAGCCGGGGATCG-CCCGGTCCCCCCTGCATGCTGTCGATCCTGCT-GCC
* * *
26540083 ACAACCCTTGGTCCGATCTGATCTTATAC
127 ACAACCCTAGGTCCGATCCGATCTTAGAC
* * * *
26540112 TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCAGGCGCTGAACGGCCGAA
1 T-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGCGGCCGAA
* * * * * ** **
26540177 GAGGCATAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTACCGATCCCACTGCCA
65 GAGGCAAAATGCGTAAGCCGGGGATC-GCCCGGTCCCCC-CTGCATGCTGTCGATCCTGCTGCCA
* * **
26540242 CAACCCTAGATCCGA-CTGGGGCTTAGAC
128 CAACCCTAGGTCCGATC-CGATCTTAGAC
* * * * * *
26540270 ATGGAATGAGCTCCCTATCCCTAAGCCAACCCACGAAA-CAGGAGTGCAGGTGCTCAGTCGGCC-
1 -TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGA-GCGTGCAGGCGCTCAG-CGGCCG
* * *
26540333 AGAGAGGTAAAATGCGTAAGCCAGGGATCAGCCCGGT-CCCCCTGCATGCTGTCGATCTTGCTGC
63 A-AGAGGCAAAATGCGTAAGCCGGGGATC-GCCCGGTCCCCCCTGCATGCTGTCGATCCTGCTGC
* * *
26540397 CACAACCCTCGGTCCGATCCAATCTGAGAC
126 CACAACCCTAGGTCCGATCCGATCTTAGAC
* * * *
26540427 TGCAAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGC
1 TG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGC
26540470 ATACGGGTGC
Statistics
Matches: 282, Mismatches: 63, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
156 2 0.01
157 106 0.38
158 139 0.49
159 35 0.12
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (155 bp):
TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGCGGCCGAAG
AGGCAAAATGCGTAAGCCGGGGATCGCCCGGTCCCCCCTGCATGCTGTCGATCCTGCTGCCACAA
CCCTAGGTCCGATCCGATCTTAGAC
Found at i:26542547 original size:26 final size:26
Alignment explanation
Indices: 26542496--26542548 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26542486 CTAGTCTGAT
**
26542496 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
26542522 CTTAGACTGAGG-ATGAACTCCATATG
1 CTTAGACT-AGGAATGAACTCCATATG
26542548 C
1 C
26542549 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:26543076 original size:184 final size:183
Alignment explanation
Indices: 26542704--26543170 Score: 598
Period size: 184 Copynumber: 2.5 Consensus size: 183
26542694 TTCGACTGGG
* * *
26542704 GCTTAGACAT-GGAATGTACTCCGTATGCCTAAGCCAACCCACGTAACGAGCGTACGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* ** * *
26542768 TCCGGCTGGA-AGGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCACCCTGCGTGCTGTCGATC
65 GCCGGCCAGAGA-GGCAGAATGCGCAAGCCAGGGATCGACCCGATCACCCTGCGTGCTGTCGATC
* * * *
26542832 CTGCTATCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTTT
129 CTACTATCGCAACCCTCAATCCGGTCCAATCTTAGACTGGGAATGAACTCCATAT
* * *
26542887 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGACCCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
26542952 CCGGCCAGAGAGGCAAAATGCGCAAGCCGGGGATCGACTCGATC-CCTCTTGTGTGTTGTCGATC
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCACC-C-TGCGTGCTGTCGATC
* * * *
26543016 CTACTGTCGCAACCCTCAATCCGGTTCGATCTTAGACTGGGAATGAACTCTATAT
129 CTACTATCGCAACCCTCAATCCGGTCCAATCTTAGACTGGGAATGAACTCCATAT
* * * * *
26543071 GCTTAGACTGGGGATGAACTCCGTATGCCCAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* *
26543136 CCGACCAGAGAGGCAGGATGCGCAAGCCAGGGATC
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATC
26543171 AAACGGTTGG
Statistics
Matches: 245, Mismatches: 35, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
182 3 0.01
183 92 0.38
184 150 0.61
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (183 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCACCCTGCGTGCTGTCGATCCT
ACTATCGCAACCCTCAATCCGGTCCAATCTTAGACTGGGAATGAACTCCATAT
Found at i:26543097 original size:26 final size:26
Alignment explanation
Indices: 26543046--26543098 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26543036 CCGGTTCGAT
*
26543046 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26543072 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26543098 C
1 C
26543099 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26544664 original size:26 final size:26
Alignment explanation
Indices: 26544613--26544665 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26544603 CTGATCTAAT
*
26544613 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
26544639 CTTAGAGTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26544665 C
1 C
26544666 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26544754 original size:26 final size:26
Alignment explanation
Indices: 26544718--26544770 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26544708 TCGGTCTGAT
*
26544718 CTTAGACTGGGAATTAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26544744 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26544770 C
1 C
26544771 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26545114 original size:25 final size:26
Alignment explanation
Indices: 26545086--26545137 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26545076 CCGATTTGAT
*
26545086 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
26545111 CTTAGATTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
26545137 C
1 C
26545138 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:26545413 original size:367 final size:368
Alignment explanation
Indices: 26544712--26545545 Score: 1099
Period size: 367 Copynumber: 2.3 Consensus size: 368
26544702 CTTCGGTCGG
* * *
26544712 TCTGATCTTAGACTGGGAATTAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCTGATCTTAGACTGGGAATCAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
* * * * *
26544777 CAACCCATGAAACGAGCATGC-AGGGGCTCAGCCGACTGGAAAGGTCGATCGAAGAGGCATAATG
66 CAACCCATAAAACGAGCGTGCGA-GCGCTCAGCCGACCGAAAAGGTCGATCGAAGAGGCATAATG
* * * * **
26544841 CTCAAGCCAGGGATCTGCCCGATCCCTCTCTGCGTGCTGTCGATCCCGCTGTCGATCTTGCTACC
130 CTCAAGCCAGAGATCAGCCCAATCCCCCTCTGCGTGCTGTCGATCCCGCTACCGATCTTGCTACC
* ** *
26544906 ATAACCCTTGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTTAGCCAACCCACGA
195 ACAACCCACGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGA
* * * * *
26544971 AATGAGCGTGCCGGCACTCAACAGATCGAAGAGGTAGAATGAACAAGCCGGGGATCGGCCCGGTC
260 AATGAGCGTGCCGGCACTCAACAGACCGAAAAGGCAGAATGAACAAGCCGGGGATCGACCCGATC
26545036 CCCCCTGCGTGCTACCAATCCTGCTGCCGCAACCCTCGATCCGA
325 CCCCCTGCGTGCTACCAATCCTGCTGCCGCAACCCTCGATCCGA
* * * *
26545080 TTTGATCTTAGACT-GGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCCGCATGCCTAAGT
1 TCTGATCTTAGACTGGGAATCAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
* * *
26545144 CAACACATAAAATGAGCGTGCGAGCGCTCAGCC-AGCCGAAAAGGTCGATCGGAGAGGCATAATG
66 CAACCCATAAAACGAGCGTGCGAGCGCTCAGCCGA-CCGAAAAGGTCGATCGAAGAGGCATAATG
* *
26545208 CGT-AAGCC-GAAGATCAGCTCAATCCCCCTCTGCGTGCTGTCGATCCCGCTACCGGTGC-TGCT
130 C-TCAAGCCAG-AGATCAGCCCAATCCCCCTCTGCGTGCTGTCGATCCCGCTACCGAT-CTTGCT
* *
26545270 ACCACAACCCACGGTCTGGCTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCA
192 ACCACAACCCACGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCA
** * * * * *
26545335 CGAAATGAGCGTGTGGGCGCTCAACCGGCCGAAAAGGCAGAAT-ACGCAAGTCGGGGATCGACCC
257 CGAAATGAGCGTGCCGGCACTCAACAGACCGAAAAGGCAGAATGA-ACAAGCCGGGGATCGACCC
* * ** *
26545399 GATCCCCTCTGCGTGCTGCTGATCCTGCTGTCGCAACCCTCGATCCGA
321 GATCCCCCCTGCGTGCTACCAATCCTGCTGCCGCAACCCTCGATCCGA
* * *
26545447 TCCGATCTTAGATTGGGAATCAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGT
1 TCTGATCTTAGACTGGGAATCAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
*
26545512 CAACCCA-AGAAACGAGCGTGCGGGCGCTCAGCCG
66 CAACCCATA-AAACGAGCGTGCGAGCGCTCAGCCG
26545546 GCCAGAGAGG
Statistics
Matches: 402, Mismatches: 55, Indels: 17
0.85 0.12 0.04
Matches are distributed among these distances:
366 3 0.01
367 309 0.77
368 90 0.22
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (368 bp):
TCTGATCTTAGACTGGGAATCAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
CAACCCATAAAACGAGCGTGCGAGCGCTCAGCCGACCGAAAAGGTCGATCGAAGAGGCATAATGC
TCAAGCCAGAGATCAGCCCAATCCCCCTCTGCGTGCTGTCGATCCCGCTACCGATCTTGCTACCA
CAACCCACGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCGTATGCCTAAGCCAACCCACGAA
ATGAGCGTGCCGGCACTCAACAGACCGAAAAGGCAGAATGAACAAGCCGGGGATCGACCCGATCC
CCCCTGCGTGCTACCAATCCTGCTGCCGCAACCCTCGATCCGA
Found at i:26546197 original size:26 final size:26
Alignment explanation
Indices: 26546168--26546220 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26546158 GGCTCAAAAT
*
26546168 CTTAGAC-GGAGAATGAGCTCCGTATG
1 CTTAGACAGG-GAATGAACTCCGTATG
*
26546194 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
26546220 C
1 C
26546221 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:26546704 original size:26 final size:26
Alignment explanation
Indices: 26546668--26546720 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26546658 TCTGTCCAAT
* *
26546668 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
26546694 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
26546720 C
1 C
26546721 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:26547072 original size:26 final size:26
Alignment explanation
Indices: 26547036--26547088 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26547026 ATGGTTCAAT
*
26547036 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26547062 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26547088 C
1 C
26547089 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26547243 original size:185 final size:184
Alignment explanation
Indices: 26546900--26547247 Score: 418
Period size: 184 Copynumber: 1.9 Consensus size: 184
26546890 ATGTTCTCTA
* * *
26546900 TATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTCCTCAGTCGGCCGAAGAGGCAGAATGCGC
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGTCCTCAGTCGACCGAAGAGGCAGAATGCGC
* * * * *
26546965 AAGCTGATGATCGGCTCGGTACCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGATATGG
66 AAGCTGAGGATCGGCCCGGTACCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTAGATATGA
* *
26547030 TTCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCG
131 CTCAAGCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCG
* * * * *
26547084 TATGCCTAAGTCAACCCACGAATCGAGCGTGCGAG-CACTCAGTCGACCGGAGAGGCATAATGTG
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGTC-CTCAGTCGACCGAAGAGGCAGAATGCG
* *
26547148 CAAG-TCGGGGAT-GAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAG-
65 CAAGCT-GAGGATCG-GCCCGGTACCCC-CTGCGTGCTGTCGATCCTGCTGCCACAACCCT-AGA
* * * *
26547210 TCTGACTGAGGCTTAGAC-GTGGAATGTACTCTGTATGC
126 TATGACTCAAGCTTAGACTG-GGAATGAACTCTGTATGC
26547248 CTAAGCCAAC
Statistics
Matches: 137, Mismatches: 21, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
183 3 0.02
184 73 0.53
185 60 0.44
186 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (184 bp):
TATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGTCCTCAGTCGACCGAAGAGGCAGAATGCGC
AAGCTGAGGATCGGCCCGGTACCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTAGATATGA
CTCAAGCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCG
Found at i:26547413 original size:343 final size:347
Alignment explanation
Indices: 26546352--26549562 Score: 1315
Period size: 355 Copynumber: 9.2 Consensus size: 347
26546342 TCGGTCTGAT
* * ** * * * * * ** *
26546352 CTTAGACTGGGAATGAGCTTTGTATGCATAAGTCAACCCATGAAACAACCGTGCGGGTGCTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGC
** * * * * * * *
26546417 CGGTCGAAGAGGCATAATGCGCAAGCCGGGGATC-GACCCGTTCCCCCTCTACATGCT-ACCAGT
66 CGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAG-CCCGGTCCCCCTCTGCGTGCTGTCGA-T
*** * * * **
26546480 CC-C--G-C-TGCCACAACCCTTAATCTGGCTAGGGCTTAGACATGGAATG-AGCTCCCTATGCC
129 CCTCTGGTCTTGCCACAACCCTCGGTCCGACT-GGGCTTAGACGTGGAATGTA-CTCTGTATGCC
* * * * * ** * *
26546539 TAAGCTAACCCATGAAACGGGTATGCGGG-CGCTCAGC-CGATCGAAGAGGCAGAATGCGCAAGC
192 TAAGCCAACCCACGAAACGAGTGTACGGGTC-CTCA-CTCGGCCGAAGAAGCAGAATACGCAAGC
* * * * * * * * * * * * * * *
26546602 TGGGGATCAGCCCGATCCCCCCTGCTTGCTATCGATCCTACTGTCGTAACCCTTGGTCT-GTCCA
255 TGAGGATCGGCTCGGTACCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGATATAATTCA
26546666 ATCTTAGACTGGGAATGAACTTCGTATG
320 ATCTTAGACTGGGAATGAACTTCGTATG
* *
26546694 CTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCATGTG-GACGCTCAG
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC--GTGCGA-G--CA-
* * * * *
26546758 TCGATCGGAGAGGCTAGCCGGAGAGGCATAATGCGCAAGTCGAGGATTAGCCCGGTCCCCCTTTG
60 -C--TC----AGCCGA-CCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTG
* * *
26546823 CGTGCTATCGATCCCGCTGCCGGTCCTATTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATG
117 CGTGCTGTCGAT--C-CT-CTGGT-C--TTGCCACAACCCTCGGTCCGACT-GGGCTTAGACGTG
* * * *
26546888 GAATGTTCTCTATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTCCTCAGTCGGCCGAAGA
174 GAATGTACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGTCCTCACTCGGCCGAAGA
* * * *
26546953 GGCAGAATGCGCAAGCTGATGATCGGCTCGGTACCCCCTGCGTGCTGTCGATCCTGCTGCCGCAA
239 AGCAGAATACGCAAGCTGAGGATCGGCTCGGTACCCCCTGCATGCTGTCGATCCTGCTGCCGCAA
* **
26547018 CCCTTGATATGGTTCAATCTTAGACTGGGAATGAAC-TCTGTATG
304 CCCTCGATATAATTCAATCTTAGACTGGGAATGAACTTC-GTATG
* *
26547062 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAATCGAGCGTGCGAGCACTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGC
* *
26547127 CGACCGGAGAGGCATAATGTGCAAGTCGGGGATGAGCCCGGTCCCCCTCTGCGTGCTGTCGAT-C
66 CGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
* *
26547191 -CT-G-C-TGCCACAACCCTCAGTCTGACTGAGGCTTAGACGTGGAATGTACTCTGTATGCCTAA
131 TCTGGTCTTGCCACAACCCTCGGTCCGACTG-GGCTTAGACGTGGAATGTACTCTGTATGCCTAA
*
26547252 GCCAACCCACGAAACGAGTGTACGGG-CACTCACTCGGCC-AGAGAAGCAGAATATGCAAGCTGA
195 GCCAACCCACGAAACGAGTGTACGGGTC-CTCACTCGGCCGA-AGAAGCAGAATACGCAAGCTGA
* * *
26547315 GGATTGGCTCGGTCCCCCCTGCATGCTGTTGAT-CTCGCTGCCGCAACCCTCGAT-TCAATTCAA
258 GGATCGGCTCGGTACCCCCTGCATGCTGTCGATCCT-GCTGCCGCAACCCTCGATAT-AATTCAA
26547378 TCTTAGACTGGGAATGAACTTCGTATG
321 TCTTAGACTGGGAATGAACTTCGTATG
* * * * *
26547405 CTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACACACGAAACGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGC
** * *
26547470 CGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCC
66 CGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
*
26547535 TGTTACTGGTCTTGCTACCACAACCATCGGTCCGACTGGGCCTTAGACGTGGAATGTACTCTGTA
131 ---T-CTGGTCTTG---CCACAACCCTCGGTCCGACTGGG-CTTAGACGTGGAATGTACTCTGTA
* * ** * * * **
26547600 TGCCTAAGCCAACCCACGAAATGAGCG-AGCGAATGCTCAGTCGGCCGAAGAGGCAGAATGTGCA
188 TGCCTAAGCCAACCCACGAAACGAGTGTA-CGGGTCCTCACTCGGCCGAAGAAGCAGAATACGCA
* * * ** ** * * ** * ***
26547664 A-ATCGGGGATCAGCTCCAT-CCCCCTTGCATTTTGCCGATCCTACTGCCATAA-CCTCAATCCG
252 AGCT-GAGGATCGGCTCGGTACCCCC-TGCATGCTGTCGATCCTGCTGCCGCAACCCTCGATATA
* * *
26547726 ATCCGATCTT-GTACT-AGAATGAA-TTCGTATG
315 ATTCAATCTTAG-ACTGGGAATGAACTTCGTATG
* * * * * *
26547757 CTGTAGACTTGAGATG-ACTCCGTATTATGCCTAAGTCAACCCATGAAA-AAGCGTCAGCGGGCG
1 CT-TAGACTGGGGATGAACTCCG---TATGCCTAAGTCAACCCACGAAACGAGCGT--GCGAGCA
* * * *
26547820 CTCAACC-ACCGTAGAGG-ATAATGCGCAAG-CTGGGGATTAGCCCGATCCCCCTCTGCGTGCTG
60 CTCAGCCGACCGGAGAGGCATAATGCGCAAGTC-GGGGATCAGCCCGGTCCCCCTCTGCGTGCTG
* * *
26547882 TCGATCCCGCTGTCGGTCCTGCTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACGTGGAATGTA
124 TCGAT--C-CTCT-GGT-CT--TGCCACAACCCTCGGTCCGACT-GGGCTTAGACGTGGAATGTA
** * ** * *
26547947 CTCCT-TATGCCTAAGCCAACCCACGAAACGAGCATACGGG-CGCTAAGC-CGATCGGAGAGGCA
181 CT-CTGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGTC-CTCA-CTCGGCCGAAGAAGCA
* * * *
26548009 GAATGCGTAAG-TCGAGGATCAGCTCGGT-CCCTCCT--A--C-GT-G---CT-AT----CAA--
243 GAATACGCAAGCT-GAGGATCGGCTCGGTACCC-CCTGCATGCTGTCGATCCTGCTGCCGCAACC
** * *
26548056 -TC----TGGTTCGATCTTAGACTGGGAATGAACTTTGTATG
306 CTCGATATAATTCAATCTTAGACTGGGAATGAACTTCGTATG
* * * * *
26548093 CTTGGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGC-AGGCGCTCAA
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGA-GCACTCAG
* ** * * * * ****** *
26548157 CCGACCAGAGAGGCAGGATGCGTAAGCCGGGGATC-GAACGGGT-GGTAAGTGGGTTCAAGCACA
65 CCGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAG-CCCGGTCCCCCTCTGCG-T---G--C-
* * ** * * *
26548220 TCTTCATATGCCT-AAGTCCTACTGCCATAACCCTCAGTCC-AGCTAGGGCTTAGACATGGAATG
122 T-GTC-GAT-CCTCTGGT-CT--TGCCACAACCCTCGGTCCGA-CT-GGGCTTAGACGTGGAATG
* * * * *
26548283 TACT-TCGTATGCCTAAGCCAACCCATGAAACGAGCGT--GGGGCGCTCAAC-CGACC-AGAGAG
179 TACTCT-GTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGTC-CTC-ACTCGGCCGA-AGAA
* * * * * * * * * * ****
26548343 GCAGAATGCGTAAGTTGGGGATCGGCTCGATCCCCCCTACGTGTTGTCGATCTTGCTATTACAAC
240 GCAGAATACGCAAGCTGAGGATCGGCTCGGTACCCCCTGCATGCTGTCGATCCTGCTGCCGCAAC
* *** * *
26548408 CTTCGATCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATG
305 CCTCGATATAATTC-AATCTTAGACTGGGAATGAACTTCGTATG
* * * * * * * *
26548451 CTTAGATTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCGTGTGGGCGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGC
** * * * * * **
26548516 CGGTCGAAGAGGCATAATGCGTAAG-CTGGGGATCAGCTCGATCCCCCTCTGCATGCTACCGATC
66 CGACCGGAGAGGCATAATGCGCAAGTC-GGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGAT-
* * * * *
26548580 CCGCTGTCGGTCTCGCTGCCACAAACCTTGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGT
129 -C-CTCT-GGTCT---TGCCACAACCCTCGGTCCGACT-GGGCTTAGACGTGGAATGTACTCTGT
** * * * *
26548645 ATGCCTAAGCCAACCCACGAAACGAGCATGCGGG-CGCTAAGC-CGACC-AGAGAGGCAGAATAC
187 ATGCCTAAGCCAACCCACGAAACGAGTGTACGGGTC-CTCA-CTCGGCCGA-AGAAGCAGAATAC
* *
26548707 GCAAGCTGAGGATCGGTCCCCGGT-CCCCTCTACATGCT-T--A--------CCG--A---TC--
249 GCAAGCTGAGGATCGG--CTCGGTACCCC-CTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGA
** *
26548753 --TGGTCCAATCTTAGACTGGGAATGAAC-TCTGTATG
311 TATAATTCAATCTTAGACTGGGAATGAACTTC-GTATG
* * * * * * ** *
26548788 CTTGGACTGGGGATAAACTCCGTATGCCTCAGTCAATCCATGAAACGAGCGTAC-AGGTGCTCAA
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGA-GCACTCAG
* * ** ** ****** * * *
26548852 TCGACCAGAGA-GCA-AGATGCATAAGTCGGGGATC-GAACGGAT-TGTAGGTGAGTTCAAG-CA
65 CCGACCGGAGAGGCATA-ATGCGCAAGTCGGGGATCAGCCCGG-TCCCCCTCTGCGTGC-TGTC-
* * * * * *
26548912 CATCTTCATGTGCCTAAGTCCTGCTGCCATAACCCTCAGTCTGGCTAGGGCTTAGACGTGGAATG
126 GATC--C---T--CT-GGT-CT--TGCCACAACCCTCGGTCCGACT-GGGCTTAGACGTGGAATG
* ** * * * * * *
26548977 TACTCCGTATGCCTAAGCCAACCCATAAAACGA--GCATGGGGCGTTCAGC-CAGCC-AGAGAGG
179 TACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGTC-CTCA-CTCGGCCGA-AGAAG
* * * * * * * *
26549038 CAGAATGCGTAAG-TCAGGGATCGACTTGGT-CCACCCTACGTGCTGTCGATCCTGCTGCTGCAA
241 CAGAATACGCAAGCTGA-GGATCGGCTCGGTACC-CCCTGCATGCTGTCGATCCTGCTGCCGCAA
*** * * *
26549101 CCCTCGATCCGA-TCTGATCTTAG-CTGGGAATGAACTCCATATG
304 CCCTCGATATAATTC-AATCTTAGACTGGGAATGAACTTCGTATG
* * * * * * *
26549144 CTTAGACTGGGAATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG-
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGC
* * * * * ** * ** *
26549208 CTAGCCGAAGAGGCATAATACG-AAGCCGGTGATTGGCCCGGTCTCCCTCTAAGTGCTGTCGGTC
66 CGA-CCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATC
* * * **
26549272 C-C---AC-TACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCT
130 CTCTGGTCTTGCCACAACCCTCGGTCCGACT-GGGCTTAGACGTGGAATGTA-CTCTGTATGCCT
* * * * * * * *
26549331 AAGCCAACCCACGAAACG-G-GCATGCAGCCGCTCAGTCGACCGAA-AAGGCAGAATGCGTAAGC
193 AAGCCAACCCACGAAACGAGTGTACG-GGTC-CTCACTCGGCCGAAGAA-GCAGAATACGCAAGC
* * * * ** * ** * * * *
26549393 GGAAGATCAGCTCGGT-CCCCCTTGCGTGCTACCGAT-CTACTGCCATAACCCTCGGTCTGATCC
255 TGAGGATCGGCTCGGTACCCCC-TGCATGCTGTCGATCCTGCTGCCGCAACCCTCGATATAATTC
* * *
26549456 GATCTTAGACTGGGAATGAACTCCATATG
319 AATCTTAGACTGGGAATGAACTTCGTATG
* * *
26549485 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCCCTCAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGC
*
26549550 CGACCGAAGAGGC
66 CGACCGGAGAGGC
26549563 CGGTCGAAAA
Statistics
Matches: 2246, Mismatches: 417, Indels: 413
0.73 0.14 0.13
Matches are distributed among these distances:
332 12 0.01
333 35 0.02
334 37 0.02
335 29 0.01
336 40 0.02
337 142 0.06
338 92 0.04
339 35 0.02
340 171 0.08
341 141 0.06
342 54 0.02
343 296 0.13
344 9 0.00
345 2 0.00
346 2 0.00
347 1 0.00
348 6 0.00
349 4 0.00
350 5 0.00
351 7 0.00
352 22 0.01
353 27 0.01
354 263 0.12
355 299 0.13
356 116 0.05
357 44 0.02
358 116 0.05
359 3 0.00
360 3 0.00
362 2 0.00
364 3 0.00
366 4 0.00
367 147 0.07
368 77 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (347 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGC
CGACCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
TCTGGTCTTGCCACAACCCTCGGTCCGACTGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAG
CCAACCCACGAAACGAGTGTACGGGTCCTCACTCGGCCGAAGAAGCAGAATACGCAAGCTGAGGA
TCGGCTCGGTACCCCCTGCATGCTGTCGATCCTGCTGCCGCAACCCTCGATATAATTCAATCTTA
GACTGGGAATGAACTTCGTATG
Found at i:26547420 original size:26 final size:26
Alignment explanation
Indices: 26547379--26547431 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26547369 TCAATTCAAT
*
26547379 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26547405 CTTAGACT-GGAGATGAACTCCGTATG
1 CTTAGACTGGGA-ATGAACTCCGTATG
26547431 C
1 C
26547432 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26547705 original size:698 final size:700
Alignment explanation
Indices: 26546424--26547987 Score: 1579
Period size: 698 Copynumber: 2.2 Consensus size: 700
26546414 AGCCGGTCGA
* * * * * * * *
26546424 AGAGGCATAATGCGCAAGCCGGGGATCGA-CCCGTTCCCCCTCTACATGCT-ACCAGTCCCGCTG
1 AGAGG-ATAATGCGCAAGCTGGGGAT-GAGCCCGATCCCCCTCTGCGTGCTGTCGACTCCTGCTG
* * * * * * *
26546487 CCACAACCCTTAATCTGGCTAGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCTAACCCA
64 CCACAACCCTCAGTCCGACTAGGGCTTAGACGTGGAATGTA-CTCCTTATGCCTAAGCCAACCCA
* * * * * ** * ** * ** *
26546551 TGAAACGGGTATGCGGGCGCTCAGC-CGATC-GAAGAGGCAGAATGCGCAAGCTGGGGATCAGCC
128 CGAAACGAGCATACGGGCACTCA-CTCGGCCAG-AGAAGCAGAATATGCAAGCTGAGGATTGGCT
* * * * * * * * * ** *
26546614 CGATCCCCCCTGCTTGCTATCGATC-CTACTGTCGTAACCCTTG-GTCTGTCCAATCTTAGACTG
191 CGGTCCCCCCTGCATGCTGTTGATCTC-GCTGCCGCAACCCTCGATTCAATTCAATCTTAGACTG
* *
26546677 GGAATGAACTTCGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAAAGA
255 GGAATGAACTTCGTATGCTTAGACTGGAGATAAACTCCGTATGCCTAAGTCAACACACGAAAAGA
* * *
26546742 GCATGTGGACGCTCAGTCGATCGGAGAGGCTAGCCGGAGAGGCATAATGCGCAAGTCGAGGATTA
320 ACATGCGGACGCTCAGTC-A-C---G-GGCTA--CGGAGAGGCATAATGCGCAAGTCGAGGATCA
* * * * * * *
26546807 GCCCGGTCCCCCTTTGCGTGCTATCGATCCCGCTGCCGGTCCTATTGCCACAACCCTCGGTCCGA
377 GCCCGATCCCCCTCTGCATGCTATCGATCCCGCTACCGGTCCTACTACCACAACCATCGGTCCGA
* * * * **
26546872 CTGGGGCTTAGACATGGAATGTTCTCTATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTC
442 CTGGGCCTTAGACATGGAATGTACTCTATATGCCTAAGCCAACCCACGAAACGAGCGAGCGAATC
* * ** * *
26546937 CTCAGTCGGCCGAAGAGGCAGAATGCGCAAGCTGATGATCGGCTCGGTACCCCCTGCGTGCTGTC
507 CTCAGTCGGCCGAAGAGGCAGAATGCGCAAGCTGAGGATCAGCTCCATACCCCCTGCATGCTGCC
* * ** * * * *
26547002 GATCCTGCTGCCGCAACCCTTGATATGGTTCAATCTTAG-ACTGGGAATGAACTCTGTATGCT-T
572 GATCCTACTGCCACAA-CCTCAATACGATCCAATCTT-GTACT-AGAATGAACTC-GTATGCTGT
* ** *
26547065 AGACTGGGGATGAACTCCG-TATGCCTAAGTCAACCCACGAATCGAGCGT-GCGAGCACTCAGTC
633 AGACTGGAGATG-ACTCCGTTATGCCTAAGTCAACCCACGAA-AAAGCGTAGCGAGCACTCA-AC
*
26547128 GACCGG
695 CACCGG
* *
26547134 AGAGGCATAATGTGCAAG-TCGGGGATGAGCCCGGTCCCCCTCTGCGTGCTGTCGA-TCCTGCTG
1 AGAGG-ATAATGCGCAAGCT-GGGGATGAGCCCGATCCCCCTCTGCGTGCTGTCGACTCCTGCTG
*
26547197 CCACAACCCTCAGTCTGACT-GAGGCTTAGACGTGGAATGTACT-CTGTATGCCTAAGCCAACCC
64 CCACAACCCTCAGTCCGACTAG-GGCTTAGACGTGGAATGTACTCCT-TATGCCTAAGCCAACCC
**
26547260 ACGAAACGAGTGTACGGGCACTCACTCGGCCAGAGAAGCAGAATATGCAAGCTGAGGATTGGCTC
127 ACGAAACGAGCATACGGGCACTCACTCGGCCAGAGAAGCAGAATATGCAAGCTGAGGATTGGCTC
26547325 GGTCCCCCCTGCATGCTGTTGATCTCGCTGCCGCAACCCTCGATTCAATTCAATCTTAGACTGGG
192 GGTCCCCCCTGCATGCTGTTGATCTCGCTGCCGCAACCCTCGATTCAATTCAATCTTAGACTGGG
* *
26547390 AATGAACTTCGTATGCTTAGACTGGAGATGAACTCCGTATGCCTAAGTCAACACACGAAACGAAC
257 AATGAACTTCGTATGCTTAGACTGGAGATAAACTCCGTATGCCTAAGTCAACACACGAAAAGAAC
* * *
26547455 GTGCGGGCGCTCAG-C-C-GG-T-CGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCC
322 ATGCGGACGCTCAGTCACGGGCTACGGAGAGGCATAATGCGCAAGTCGAGGATCAGCCCGATCCC
* * * * * *
26547515 CCTCTGCATGCTGTCGATCCTGTTACTGGTCTTGCTACCACAACCATCGGTCCGACTGGGCCTTA
387 CCTCTGCATGCTATCGATCCCGCTACCGGTCCTACTACCACAACCATCGGTCCGACTGGGCCTTA
* * * *
26547580 GACGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGAGCGAATGCTCAGTCGGC
452 GACATGGAATGTACTCTATATGCCTAAGCCAACCCACGAAACGAGCGAGCGAATCCTCAGTCGGC
* * * **
26547645 CGAAGAGGCAGAATGTGCAA-ATCGGGGATCAGCTCCAT-CCCCCTTGCATTTTGCCGATCCTAC
517 CGAAGAGGCAGAATGCGCAAGCT-GAGGATCAGCTCCATACCCCC-TGCATGCTGCCGATCCTAC
* * * * *
26547708 TGCCATAACCTCAATCCGATCCGATCTTGTACTAGAATGAATTCGTATGCTGTAGACTTGAGATG
580 TGCCACAACCTCAATACGATCCAATCTTGTACTAGAATGAACTCGTATGCTGTAGACTGGAGATG
* * * *
26547773 ACTCCGTATTATGCCTAAGTCAACCCATGAAAAAGCGTCAGCGGGCGCTCAACCACCGT
645 ACTCCG--TTATGCCTAAGTCAACCCACGAAAAAGCGT-AGCGAGCACTCAACCACCGG
*
26547832 AGAGGATAATGCGCAAGCTGGGGATTAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGTCG
1 AGAGGATAATGCGCAAGCTGGGGATGAGCCCGATCCCCCTCTGCGTGCTGTCGA---------C-
*
26547897 GTCCTGCTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACGTGGAATGTACTCCTTATGCCTAAG
56 -TCCTGCTGCCACAACCCTCAGTCCGACTAGGGCTTAGACGTGGAATGTACTCCTTATGCCTAAG
26547962 CCAACCCACGAAACGAGCATACGGGC
120 CCAACCCACGAAACGAGCATACGGGC
26547988 GCTAAGCCGA
Statistics
Matches: 707, Mismatches: 113, Indels: 69
0.80 0.13 0.08
Matches are distributed among these distances:
695 13 0.02
696 21 0.03
697 71 0.10
698 227 0.32
699 9 0.01
701 1 0.00
702 2 0.00
707 1 0.00
709 86 0.12
710 182 0.26
711 94 0.13
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (700 bp):
AGAGGATAATGCGCAAGCTGGGGATGAGCCCGATCCCCCTCTGCGTGCTGTCGACTCCTGCTGCC
ACAACCCTCAGTCCGACTAGGGCTTAGACGTGGAATGTACTCCTTATGCCTAAGCCAACCCACGA
AACGAGCATACGGGCACTCACTCGGCCAGAGAAGCAGAATATGCAAGCTGAGGATTGGCTCGGTC
CCCCCTGCATGCTGTTGATCTCGCTGCCGCAACCCTCGATTCAATTCAATCTTAGACTGGGAATG
AACTTCGTATGCTTAGACTGGAGATAAACTCCGTATGCCTAAGTCAACACACGAAAAGAACATGC
GGACGCTCAGTCACGGGCTACGGAGAGGCATAATGCGCAAGTCGAGGATCAGCCCGATCCCCCTC
TGCATGCTATCGATCCCGCTACCGGTCCTACTACCACAACCATCGGTCCGACTGGGCCTTAGACA
TGGAATGTACTCTATATGCCTAAGCCAACCCACGAAACGAGCGAGCGAATCCTCAGTCGGCCGAA
GAGGCAGAATGCGCAAGCTGAGGATCAGCTCCATACCCCCTGCATGCTGCCGATCCTACTGCCAC
AACCTCAATACGATCCAATCTTGTACTAGAATGAACTCGTATGCTGTAGACTGGAGATGACTCCG
TTATGCCTAAGTCAACCCACGAAAAAGCGTAGCGAGCACTCAACCACCGG
Found at i:26547788 original size:355 final size:350
Alignment explanation
Indices: 26546580--26549718 Score: 1517
Period size: 354 Copynumber: 9.0 Consensus size: 350
26546570 CTCAGCCGAT
* * * * * * * *
26546580 CGAAGAGGCAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCCTGCTTGCTATCGATCCTACTG
1 CGAAGAGGCAGAATGTGCAAGCTGAGGATCGGCTCGGT-CCCCCTGCATGCTGTCGATCCTGCTG
* * * * * *
26546645 TCGTAACCCTTGGT-CTG-TCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGAT
65 CCGCAACCCTCGATAC-GATTCAATCTTAGACTGGGAATGAA-TTCGTATGCTTAGACTGGAGAT
* * * * * *
26546708 AAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCATGTGGACGCTCAGTCGATCGGAGAGGCT
128 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAG-C---C------G--
* * * *
26546773 AGCCGGAGAGGCATAATGCGCAAGTCGAGGATTAGCCCGGTCCCCCTTTGCGTGCTATCGATCCC
181 A-CCGGAGAGGCATAATGCGCAAGTCGGGGATTAGCCCGATCCCCCTCTGCGTGCTGTCGATCCC
* * ** * * * *
26546838 GCTGCCGGTCCTATTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTTCTCTATAT
245 G-TTCTGGTCCTGCTGCCACAACCCTCAGTCCGACT-GGGCTTAGACGTGGAATGTACTCTGTAT
* * **
26546903 GCCTAAGCCAACCCACGAAACGAGTGTGCGGGTCCTCAGTCGGC
308 GCCTAAGCCAACCCACGAAACGAGCGAGCGAAT-CTCAGTCGGC
* * *
26546947 CGAAGAGGCAGAATGCGCAAGCTGATGATCGGCTCGGTACCCCCTGCGTGCTGTCGATCCTGCTG
1 CGAAGAGGCAGAATGTGCAAGCTGAGGATCGGCTCGGT-CCCCCTGCATGCTGTCGATCCTGCTG
* * * * *
26547012 CCGCAACCCTTGATATGGTTCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATG
65 CCGCAACCCTCGATACGATTCAATCTTAGACTGGGAATGAATTC-GTATGCTTAGACTGGAGATG
* * * * *
26547077 AACTCCGTATGCCTAAGTCAACCCACGAATCGAGCGTGCGAGCACTCAGTCGACCGGAGAGGCAT
129 AACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGACCGGAGAGGCAT
* * *
26547142 AATGTGCAAGTCGGGGATGAGCCCGGTCCCCCTCTGCGTGCTGTCGA-----------TCCTGCT
194 AATGCGCAAGTCGGGGATTAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGTTCTGGTCCTGCT
*
26547196 GCCACAACCCTCAGTCTGACTGAGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCCA
259 GCCACAACCCTCAGTCCGACTG-GGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCCA
* * * *
26547261 CGAAACGAGTGTACGGGCA-CTCACTCGGC
323 CGAAACGAGCG-A-GCGAATCTCAGTCGGC
* * * *
26547290 C-AGAGAAGCAGAATATGCAAGCTGAGGATTGGCTCGGTCCCCCCTGCATGCTGTTGAT-CTCGC
1 CGA-AGAGGCAGAATGTGCAAGCTGAGGATCGGCTCGGT-CCCCCTGCATGCTGTCGATCCT-GC
* *
26547353 TGCCGCAACCCTCGATTCAATTCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGAGA
63 TGCCGCAACCCTCGATACGATTCAATCTTAGACTGGGAATGAA-TTCGTATGCTTAGACTGGAGA
* **
26547418 TGAACTCCGTATGCCTAAGTCAACACACGAAACGAACGTGCGGGCGCTCAGCCGGTCGGAGAGGC
127 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGACCGGAGAGGC
* * * *
26547483 ATAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCCTGTTACTGGTCTT
192 ATAATGCGCAAGTCGGGGATTAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGTT-CTGGTCCT
* * *
26547548 GCTACCACAACCATCGGTCCGACTGGGCCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAAC
256 GCTGCCACAACCCTCAGTCCGACTGGG-CTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAAC
*
26547613 CCACGAAATGAGCGAGCGAATGCTCAGTCGGC
320 CCACGAAACGAGCGAGCGAAT-CTCAGTCGGC
* * * ** ** * *
26547645 CGAAGAGGCAGAATGTGCAA-ATCGGGGATCAGCTCCATCCCCCTTGCATTTTGCCGATCCTACT
1 CGAAGAGGCAGAATGTGCAAGCT-GAGGATCGGCTCGGTCCCCC-TGCATGCTGTCGATCCTGCT
** * * * * * *
26547709 GCCATAA-CCTCAATCCGATCCGATCTT-GTACT-AGAATGAATTCGTATGCTGTAGACTTGAGA
64 GCCGCAACCCTCGATACGATTCAATCTTAG-ACTGGGAATGAATTCGTATGCT-TAGACTGGAGA
* * *
26547771 TG-ACTCCGTATTATGCCTAAGTCAACCCATGAAA--AAGCGTCAGCGGGCGCTCAACC-ACCGT
127 TGAACTCCG---TATGCCTAAGTCAACCCACGAAACGAA-CGT--GCGGGCGCTCAGCCGACCGG
26547832 AGAGG-ATAATGCGCAAG-CTGGGGATTAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGT
186 AGAGGCATAATGCGCAAGTC-GGGGATTAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCG-T-T
*
26547895 C-GGTCCTGCTGCCACAACCCTCAGTCCGGCTAGGGCTTAGACGTGGAATGTACTCCT-TATGCC
248 CTGGTCCTGCTGCCACAACCCTCAGTCCGACT-GGGCTTAGACGTGGAATGTACT-CTGTATGCC
* *** * * **
26547958 TAAGCCAACCCACGAAACGAGC-ATACGGGCGCTAAGCCGAT
311 TAAGCCAACCCACGAAACGAGCGA-GC-GAATCTCAGTCGGC
* * * * *
26547999 CGGAGAGGCAGAATGCGTAAG-TCGAGGATCAGCTCGGTCCCTCCT--A--C-GT-G---CT-AT
1 CGAAGAGGCAGAATGTGCAAGCT-GAGGATCGGCTCGGTCCC-CCTGCATGCTGTCGATCCTGCT
* * * * *
26548053 ----CAA---TC--T--GGTTCGATCTTAGACTGGGAATGAACTTTGTATGCTTGGACTGGGGAT
64 GCCGCAACCCTCGATACGATTCAATCTTAGACTGGGAATGAA-TTCGTATGCTTAGACTGGAGAT
* * * * * *
26548107 GAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAACCGACCAGAGAGGCA
128 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGACCGGAGAGGCA
** * * * * * * ****** * * * * * *
26548172 GGATGCGTAAGCCGGGGA-TCGAACGGGT-GGTAAGTGGGTTCAAG-CACATCTTCATATGCCTA
193 TAATGCGCAAGTCGGGGATTAG-CCCGATCCCCCTCTGCGTGC-TGTC-GATC-CCGT-T--CT-
* * * *
26548234 AGTCCTACTGCCATAACCCTCAGTCC-AGCTAGGGCTTAGACATGGAATGTACT-TCGTATGCCT
250 GGTCCTGCTGCCACAACCCTCAGTCCGA-CT-GGGCTTAGACGTGGAATGTACTCT-GTATGCCT
* * * *** ** *
26548297 AAGCCAACCCATGAAACGAGCGTGGGGCGCTCAACCGAC
312 AAGCCAACCCACGAAACGAGCGAGCGAATCTCAGTCGGC
* * * * * * * * *
26548336 C-AGAGAGGCAGAATGCGTAAGTTGGGGATCGGCTCGATCCCCCCTACGTGTTGTCGATCTTGCT
1 CGA-AGAGGCAGAATGTGCAAGCTGAGGATCGGCTCGGT-CCCCCTGCATGCTGTCGATCCTGCT
**** * * * * *
26548400 ATTACAACCTTCGATCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTAGG-G
64 GCCGCAACCCTCGATACGATTC-AATCTTAGACTGGGAATGAA-TTCGTATGCTTAGACT-GGAG
* * * * * ** *
26548463 ATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCGTGTGGGCGCTCAACCGGTCGAAGAGG
126 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGACCGGAGAGG
* * * * **
26548528 CATAATGCGTAAG-CTGGGGATCAGCTCGATCCCCCTCTGCATGCTACCGATCCCGCTGTC-GGT
191 CATAATGCGCAAGTC-GGGGATTAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCG-T-TCTGGT
* ** * *
26548591 -CTCGCTGCCACAAACCTTGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGC
253 CCT-GCTGCCACAACCCTCAGTCCGACT-GGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGC
*** * * *
26548655 CAACCCACGAAACGAGC-ATGCGGGCGCTAAGCCGAC
316 CAACCCACGAAACGAGCGA-GC-GAATCTCAGTCGGC
** * *
26548691 C-AGAGAGGCAGAATACGCAAGCTGAGGATCGGTCCCCGGTCCCCTCTACATGCT-T--A-----
1 CGA-AGAGGCAGAATGTGCAAGCTGAGGATCGG--CTCGGTCCCC-CTGCATGCTGTCGATCCTG
* * * * *
26548747 ---CCG--A---TC--T--GGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTGGACTGGGG
62 CTGCCGCAACCCTCGATACGATTCAATCTTAGACTGGGAATGAATTC-GTATGCTTAGACTGGAG
* * * * * * * * ** *
26548800 ATAAACTCCGTATGCCTCAGTCAATCCATGAAACGAGCGTACAGGTGCTCAATCGACCAGAGA-G
126 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGACCGGAGAGG
** * * * ****** * * * * * *
26548864 CA-AGATGCATAAGTCGGGGA-TCGAACGGAT-TGTAGGTGAGTTCAAG-CACATCTTCATGTGC
191 CATA-ATGCGCAAGTCGGGGATTAG-CCCGATCCCCCTCTGCGTGC-TGTC-GATC--C-CGT-T
* * * * *
26548925 CTAAGTCCTGCTGCCATAACCCTCAGTCTGGCTAGGGCTTAGACGTGGAATGTACTCCGTATGCC
248 CT-GGTCCTGCTGCCACAACCCTCAGTCCGACT-GGGCTTAGACGTGGAATGTACTCTGTATGCC
** * * *
26548990 TAAGCCAACCCATAAAACGAGCATGGGGCG--T-TCAGCCAGC
311 TAAGCCAACCCACGAAACGAGC---GAGCGAATCTCAGTCGGC
* * * * * * *
26549030 C-AGAGAGGCAGAATGCGTAAG-TCAGGGATCGACTTGGTCCACCCTACGTGCTGTCGATCCTGC
1 CGA-AGAGGCAGAATGTGCAAGCTGA-GGATCGGCTCGGTCC-CCCTGCATGCTGTCGATCCTGC
* * * * *
26549093 TGCTGCAACCCTCGATCCGA-TCTGATCTTAG-CTGGGAATGAACTCCATATGCTTAGACTGG-G
63 TGCCGCAACCCTCGATACGATTC-AATCTTAGACTGGGAATGAA-TTCGTATGCTTAGACTGGAG
* * * * * * *
26549155 AATGAACTTCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG-CTAGCCGAAGA
126 -ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGA-CCGGAGA
* * * * * * **
26549219 GGCATAATACG-AAGCCGGTGATTGGCCCGGTCTCCCTCTAAGTGCTGTCG-----G-TC----C
189 GGCATAATGCGCAAGTCGGGGATTAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGTTCTGGTC
* * * * **
26549273 C-ACTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCC
254 CTGCTGCCACAACCCTCAGTCCGACT-GGGCTTAGACGTGGAATGTA-CTCTGTATGCCTAAGCC
* *** *
26549336 AACCCACGAAACGGGC-ATGCAGCCGCTCAGTCGAC
317 AACCCACGAAACGAGCGA-GC-GAATCTCAGTCGGC
* * * * * * * ** *
26549371 CGAAAAGGCAGAATGCGTAAGCGGAAGATCAGCTCGGTCCCCCTTGCGTGCTACCGAT-CTACTG
1 CGAAGAGGCAGAATGTGCAAGCTGAGGATCGGCTCGGTCCCCC-TGCATGCTGTCGATCCTGCTG
** * * * * * *
26549435 CCATAACCCTCGGT-CTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGAT
65 CCGCAACCCTCGATAC-GATTCAATCTTAGACTGGGAATGAA-TTCGTATGCTTAGACTGGAGAT
* * *
26549499 GAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCCCTCAGCCGACCGAAGAGGCC
128 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGACCG--GA----
* * * * * * * *
26549564 GGTCGAAAAGGTATAATGCACAAGTC-GAGATCAGCCCAATCCCCCTTTACGTGCTGCCGATCCC
187 ----G---AGGCATAATGCGCAAGTCGGGGATTAGCCCGATCCCCCTCTGCGTGCTGTCGATCCC
* * * *
26549628 GCTGTC-GGTCCTACTGCTACAACCCTCTGTCCGACTGGGGCTTAGACATGGAATGTACT-TCGT
245 G-T-TCTGGTCCTGCTGCCACAACCCTCAGTCCGACT-GGGCTTAGACGTGGAATGTACTCT-GT
* *
26549691 AAGCCTAAGCTAACCCACGAAACGAGCG
306 ATGCCTAAGCCAACCCACGAAACGAGCG
26549719 TGTGGGTGCT
Statistics
Matches: 2164, Mismatches: 411, Indels: 394
0.73 0.14 0.13
Matches are distributed among these distances:
332 13 0.01
333 39 0.02
334 38 0.02
335 28 0.01
336 42 0.02
337 144 0.07
338 91 0.04
339 35 0.02
340 165 0.08
341 132 0.06
342 12 0.01
343 294 0.14
344 4 0.00
345 4 0.00
346 2 0.00
347 1 0.00
348 4 0.00
349 1 0.00
350 1 0.00
351 4 0.00
352 17 0.01
353 31 0.01
354 298 0.14
355 266 0.12
356 107 0.05
357 39 0.02
358 117 0.05
359 9 0.00
362 2 0.00
364 1 0.00
365 2 0.00
366 67 0.03
367 71 0.03
368 83 0.04
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (350 bp):
CGAAGAGGCAGAATGTGCAAGCTGAGGATCGGCTCGGTCCCCCTGCATGCTGTCGATCCTGCTGC
CGCAACCCTCGATACGATTCAATCTTAGACTGGGAATGAATTCGTATGCTTAGACTGGAGATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGACCGGAGAGGCATAA
TGCGCAAGTCGGGGATTAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGTTCTGGTCCTGCTGC
CACAACCCTCAGTCCGACTGGGCTTAGACGTGGAATGTACTCTGTATGCCTAAGCCAACCCACGA
AACGAGCGAGCGAATCTCAGTCGGC
Found at i:26548454 original size:26 final size:26
Alignment explanation
Indices: 26548425--26548477 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26548415 CCGATCTGAT
26548425 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
26548451 CTTAGATTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
26548477 C
1 C
26548478 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:26548601 original size:692 final size:688
Alignment explanation
Indices: 26547782--26549562 Score: 2148
Period size: 694 Copynumber: 2.6 Consensus size: 688
26547772 GACTCCGTAT
* *
26547782 TATGCCTAAGTCAACCCATGAAAA-AGCGTCAGCGGGCGCTCAACCACCGTAGAGG-ATAATGCG
1 TATGCCTAAGTCAACCCATGAAAAGAGCGT--GCGGGCGCTCAACCGCCGAAGAGGCATAATGCG
* *
26547845 CAAGCTGGGGATTAGCCCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGTCGGTCCTGCTGCCAC
64 -AAGCTGGGGATTAGCCCGATCCCCCTCTGCATGCT-ACGATCCCGCTGTCGGTCC-GCTGCCAC
* * * * *
26547910 AACCCTCAGTCCGGCTAGGGCTTAGACGTGGAATGTACTCCTTATGCCTAAGCCAACCCACGAAA
126 AACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCCTATGCCTAAGCCAACCCACGAAA
* *
26547975 CGAGCATACGGGCGCTAAGCCGATCGGAGAGGCAGAATGCGTAAGTC-GAGGATCAGCTCGGTCC
191 CGAGCATGCGGGCGCTAAGCCGACCGGAGAGGCAGAATGCGTAAG-CGGAGGATCAGCTCGGTCC
*
26548039 CTC-CTACGTGCTATCAATCTGGTTCGATCTTAGACTGGGAATGAACTTTGTATGCTTGGACTGG
255 CTCGCTACGTGCTATCAATCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTGGACTGG
26548103 GGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAACCGACCAGAGA
320 GGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAACCGACCAGAGA
* * * *
26548168 GGCAGGATGCGTAAGCCGGGGATCGAACGGGTGGTAAGTGGGTTCAAGCACATCTTCATATGCCT
385 GGCAAGATGCATAAGCCGGGGATCGAACGGATGGTAAGTGAGTTCAAGCACATCTTCATATGCCT
*
26548233 AAGTCCTACTGCCATAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGTACTTCGTATGCCTA
450 AAGTCCTACTGCCATAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGTACTCCGTATGCCTA
* * **
26548298 AGCCAACCCATGAAACGAGCGTGGGGCGCTCAACC-GACCAGAGAGGCAGAATGCGTAAGTTGGG
515 AGCCAACCCATAAAACGAGCATGGGGCGCTCAACCAG-CCAGAGAGGCAGAATGCGTAAGTCAGG
* * * * * *
26548362 GATCGGCTCGATCCCCCCTACGTGTTGTCGATCTTGCTATTACAACCTTCGATCCGATCTGATCT
579 GATCGACTCGATCCACCCTACGTGCTGTCGATCCTGCTACTACAACCCTCGATCCGATCTGATCT
* *
26548427 TAGACTGGGAATGAACTCCGTATGCTTAGATTAGGG-ATGAACTCCG
644 TAG-CTGGGAATGAACTCCATATGCTTAGACT-GGGAATGAACTCCG
* *
26548473 TATGCCTAAGTCAACCCATGAAAAGAGCGTGTGGGCGCTCAACCGGTCGAAGAGGCATAATGCGT
1 TATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCGCTCAACC-GCCGAAGAGGCATAATGCG-
* *
26548538 AAGCTGGGGATCAGCTCGATCCCCCTCTGCATGCTACCGATCCCGCTGTCGGTCTCGCTGCCACA
64 AAGCTGGGGATTAGCCCGATCCCCCTCTGCATGCTA-CGATCCCGCTGTCGGTC-CGCTGCCACA
* * *
26548603 AACCTTGGTCCGACTGGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAACCCACGAAAC
127 ACCCTCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCCTATGCCTAAGCCAACCCACGAAAC
* * * * * *
26548668 GAGCATGCGGGCGCTAAGCCGACCAGAGAGGCAGAATACGCAAGCTGAGGATCGGTCCCCGGTCC
192 GAGCATGCGGGCGCTAAGCCGACCGGAGAGGCAGAATGCGTAAGCGGAGGATCAG--CTCGGTCC
* * * * * *
26548733 C-CTCTACATGCTTACCGATCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTGGACTG
255 CTCGCTACGTGC-TATCAATCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTGGACTG
* * * * * * *
26548797 GGGATAAACTCCGTATGCCTCAGTCAATCCATGAAACGAGCGTACAGGTGCTCAATCGACCAGAG
319 GGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAACCGACCAGAG
* * * *
26548862 A-GCAAGATGCATAAGTCGGGGATCGAACGGATTGTAGGTGAGTTCAAGCACATCTTCATGTGCC
384 AGGCAAGATGCATAAGCCGGGGATCGAACGGATGGTAAGTGAGTTCAAGCACATCTTCATATGCC
* ** *
26548926 TAAGTCCTGCTGCCATAACCCTCAGTCTGGCTAGGGCTTAGACGTGGAATGTACTCCGTATGCCT
449 TAAGTCCTACTGCCATAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGTACTCCGTATGCCT
* *
26548991 AAGCCAACCCATAAAACGAGCATGGGGCGTTCAGCCAGCCAGAGAGGCAGAATGCGTAAGTCAGG
514 AAGCCAACCCATAAAACGAGCATGGGGCGCTCAACCAGCCAGAGAGGCAGAATGCGTAAGTCAGG
* * * *
26549056 GATCGACTTGGTCCACCCTACGTGCTGTCGATCCTGCTGCTGCAACCCTCGATCCGATCTGATCT
579 GATCGACTCGATCCACCCTACGTGCTGTCGATCCTGCTACTACAACCCTCGATCCGATCTGATCT
*
26549121 TAGCTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCG
644 TAGCTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCG
* * * * * * *
26549166 TATGCATAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCTAGCCGAAGAGGCATAATACGA
1 TATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCGCTCAAC-CGCCGAAGAGGCATAATGCGA
* * * * * * *
26549231 AGCCGGTGATTGGCCCGGTCTCCCTCT--A----A-G-T---GCTGTCGGTCCCACTACCACAAC
65 AGCTGGGGATTAGCCCGATCCCCCTCTGCATGCTACGATCCCGCTGTCGGT-CCGCTGCCACAAC
26549285 CCTCGGTCCGACTGGGGCTTAGACATGGAATG-AGCTCCCTATGCCTAAGCCAACCCACGAAACG
129 CCTCGGTCCGACTGGGGCTTAGACATGGAATGTA-CTCCCTATGCCTAAGCCAACCCACGAAACG
* * * * * * * *
26549349 GGCATGCAGCCGCTCAGTCGACCGAAAAGGCAGAATGCGTAAGCGGAAGATCAGCTCGGTCCCCC
193 AGCATGCGGGCGCTAAGCCGACCGGAGAGGCAGAATGCGTAAGCGGAGGATCAGCTCGGT--CCC
*
26549414 TTGCGTGCTACCGAT-CTACTGCCATAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACT
256 -T-C--GCTA-CG-TGCTA-T--C--AA-TCT-GG--T--T-CGATCTTAGACTGGGAATGAACT
** * * *
26549478 CCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
303 CTGTATGCTTGGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGC
* *
26549543 CCTCAGCCGACC-GAAGAGGC
368 GCTCAACCGACCAG-AGAGGC
26549563 CGGTCGAAAA
Statistics
Matches: 928, Mismatches: 124, Indels: 69
0.83 0.11 0.06
Matches are distributed among these distances:
678 5 0.01
679 1 0.00
680 122 0.13
681 1 0.00
683 2 0.00
684 1 0.00
685 5 0.01
686 3 0.00
687 1 0.00
688 1 0.00
690 15 0.02
691 34 0.04
692 202 0.22
693 91 0.10
694 246 0.27
695 107 0.12
696 1 0.00
697 88 0.09
698 2 0.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (688 bp):
TATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGCGCTCAACCGCCGAAGAGGCATAATGCGAA
GCTGGGGATTAGCCCGATCCCCCTCTGCATGCTACGATCCCGCTGTCGGTCCGCTGCCACAACCC
TCGGTCCGACTGGGGCTTAGACATGGAATGTACTCCCTATGCCTAAGCCAACCCACGAAACGAGC
ATGCGGGCGCTAAGCCGACCGGAGAGGCAGAATGCGTAAGCGGAGGATCAGCTCGGTCCCTCGCT
ACGTGCTATCAATCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTGGACTGGGGATGA
ACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAACCGACCAGAGAGGCAAG
ATGCATAAGCCGGGGATCGAACGGATGGTAAGTGAGTTCAAGCACATCTTCATATGCCTAAGTCC
TACTGCCATAACCCTCAGTCCAGCTAGGGCTTAGACATGGAATGTACTCCGTATGCCTAAGCCAA
CCCATAAAACGAGCATGGGGCGCTCAACCAGCCAGAGAGGCAGAATGCGTAAGTCAGGGATCGAC
TCGATCCACCCTACGTGCTGTCGATCCTGCTACTACAACCCTCGATCCGATCTGATCTTAGCTGG
GAATGAACTCCATATGCTTAGACTGGGAATGAACTCCG
Found at i:26550491 original size:26 final size:26
Alignment explanation
Indices: 26550462--26550511 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
26550452 AGCTCAAAAT
*
26550462 CTTAGAC-TGGGAAAGAGCTTCGTATG
1 CTTAGACAT-GGAAAGAACTTCGTATG
*
26550488 CTTAGACATGGAATGAACTTCGTA
1 CTTAGACATGGAAAGAACTTCGTA
26550512 CGCCTAAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAAAGAACTTCGTATG
Found at i:26551321 original size:26 final size:26
Alignment explanation
Indices: 26551292--26551344 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26551282 CCGGTCTGAT
*
26551292 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
26551318 CTTAGATTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
26551344 C
1 C
26551345 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:26552065 original size:26 final size:26
Alignment explanation
Indices: 26552014--26552066 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26552004 GGCTCAAAAT
* *
26552014 CTTAGACTGGGAATGAGCTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26552040 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
26552066 C
1 C
26552067 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26552411 original size:159 final size:157
Alignment explanation
Indices: 26552039--26552541 Score: 453
Period size: 158 Copynumber: 3.2 Consensus size: 157
26552029 AGCTCTATAT
* *
26552039 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTAGG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTA-G
* * * * * * *
26552104 TCG-GTCGGAGAGGCAGAAAGCACAAGTCGGGGATCGACCCAGTCCCCCCTACGTGCTGTCAATC
65 CCGACT-GGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATC
* * *
26552168 CTACTGCCATAACCCTCGGTCCGATCTGA
129 CTACTGACACAACCCTCAGTCCGATCTGA
* * * *
26552197 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCT-A
* * **
26552261 GCCGACTGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCCGGT
64 GCCGACTGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGCCAAT
* * *
26552326 -CTCGCTGACACAACCCTCAGTCTGA-CTGGG
128 CCT-ACTGACACAACCCTCAGTCCGATCT-GA
* ** * * * *
26552356 GCTTAGACATGGAATGAGCTCCCAATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCT-AG
* * * * * * *
26552421 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGGATCGGCTCGATCCCCCC-GCGTGCTGTCGATC
65 CCGACTGGAGAGGCAGAATGCGCAAGTC-GGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATC
* * ** * *
26552485 CTGCTGTCGTAACCCTC-GATCCGGTTTGA
129 CTACTGACACAACCCTCAG-TCCGATCTGA
* *
26552514 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
26552542 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 56, Indels: 24
0.78 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 146 0.53
159 110 0.40
160 18 0.06
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAGC
CGACTGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATCCT
ACTGACACAACCCTCAGTCCGATCTGA
Found at i:26552551 original size:26 final size:26
Alignment explanation
Indices: 26552515--26552567 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26552505 CCGGTTTGAT
*
26552515 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26552541 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26552567 C
1 C
26552568 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26553636 original size:26 final size:26
Alignment explanation
Indices: 26553607--26553659 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26553597 GGCTTAAAAT
*
26553607 CTTAGAC-TGGGAATGAGCTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
26553633 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
26553659 C
1 C
26553660 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:26553990 original size:159 final size:158
Alignment explanation
Indices: 26553632--26554134 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 158
26553622 AGCTCCGTAT
* * * *
26553632 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTAAG
* * * ** *
26553697 CCGATCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACTCAGTCCCCCCTGCGTGCTGTCGATCC
66 CCGACCGAAGAGGCAGAATGCGCAAACCGGGGATCGACTCAGTCCCCCCTGCGTGCTGCCGATCC
* * *
26553762 TACTACCGCAACCCTCGGTCTGGTCTGA
131 CACTACCACAACCCTCGGTCCGGTCTGA
* * * * *
26553790 TCTTAGAC-TGGCAATGAACTCCATATGCATAGGTCAACCCATGAAATTAGCGTACGGGCACTAA
1 GCTTAGACATGG-AATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTAA
* * *
26553854 GCC-AGCCGAAGAGGCATAATGCGCAAACCGGGGATCGGCTC-GATCCCCCTCTGTGTGCTGCCG
65 GCCGA-CCGAAGAGGCAGAATGCGCAAACCGGGGATCGACTCAG-TCCCCC-CTGCGTGCTGCCG
* * * *
26553917 GTCCCGCTGCCACAACCCTCGGTCCGG-CTAGG
127 ATCCCACTACCACAACCCTCGGTCCGGTCT-GA
* * * * * * *
26553949 GCTTAGACATGGAATGAGCTCCCTATGCCTATGCCAACCCATAAAATGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTAAG
* * * ** * * * *
26554014 CCGACCAGCA-AGGTAGAATGCACAAGTCGGGGATTGGCTCGGTCCCCCCTGCGTGCTACCGATC
66 CCGACC-GAAGAGGCAGAATGCGCAAACCGGGGATCGACTCAGTCCCCCCTGCGTGCTGCCGATC
** ** * *
26554078 CTGCTGTCGCAACCCTCGGTACGGTCTGA
130 CCACTACCACAACCCTCGGTCCGGTCTGA
* *
26554107 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
26554135 TTAGACTGGG
Statistics
Matches: 280, Mismatches: 54, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
157 6 0.02
158 148 0.53
159 119 0.43
160 7 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCACTAAG
CCGACCGAAGAGGCAGAATGCGCAAACCGGGGATCGACTCAGTCCCCCCTGCGTGCTGCCGATCC
CACTACCACAACCCTCGGTCCGGTCTGA
Found at i:26554144 original size:26 final size:26
Alignment explanation
Indices: 26554108--26554160 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26554098 ACGGTCTGAT
26554108 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26554134 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26554160 C
1 C
26554161 CTATGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26554512 original size:26 final size:26
Alignment explanation
Indices: 26554476--26554528 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26554466 CCGGTCTGTT
*
26554476 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26554502 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26554528 C
1 C
26554529 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26556116 original size:26 final size:26
Alignment explanation
Indices: 26556075--26556127 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26556065 CCGATCCGAT
26556075 CTTAGACTGGGAATGAACAATGTATG
1 CTTAGACTGGGAATGAACAATGTATG
**
26556101 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACAATGTATG
26556127 C
1 C
26556128 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACAATGTATG
Found at i:26557334 original size:26 final size:26
Alignment explanation
Indices: 26557298--26557350 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26557288 CCAATCTGAT
*
26557298 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
26557324 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
26557350 C
1 C
26557351 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:26558223 original size:26 final size:26
Alignment explanation
Indices: 26558187--26558239 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26558177 CCGGTCCGAT
26558187 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
26558213 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
26558239 C
1 C
26558240 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:26559752 original size:26 final size:26
Alignment explanation
Indices: 26559723--26559775 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26559713 CCAGTCCGAT
26559723 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* * *
26559749 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
26559775 C
1 C
26559776 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:26560107 original size:26 final size:26
Alignment explanation
Indices: 26560078--26560130 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26560068 CCGGTCTGAT
*
26560078 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACTTGGG-ATGAACTACGTATG
26560104 CTTAGACTTGGGATGAACTACGTATG
1 CTTAGACTTGGGATGAACTACGTATG
26560130 C
1 C
26560131 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTTGGGATGAACTACGTATG
Found at i:26560381 original size:368 final size:361
Alignment explanation
Indices: 26559525--26560548 Score: 1136
Period size: 368 Copynumber: 2.8 Consensus size: 361
26559515 CCTTCTGTGT
* * * * * *
26559525 GCTACCGATCCCCGTTGCCACAACTCTCGGTCCGACTGGGGCTTAGACATGGAATG-AGCT-TAA
1 GCTACCGAT-CCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTA-CTCT-G
*
26559588 TATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGT-
63 TATGCCTAAGCCAACCCACGAAATGAG-CGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAAT-TC
* * * * **
26559651 GTAA-CCGAGGATC-GACCTGGTCCCCCCTGTATGCTGTCGATCCTGTCGT-CGCAACCCTC-AG
126 GTAAGTCGGGGATCAG-CCCGGTCCCTCCTGCGTGCTGTCGATCCTG-C-TACGCAACCCTCGA-
* * *
26559712 TCCAGTCCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCC
187 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTC-GTATGCC
* ** *
26559777 TAAGTCAACCCATGAAACGAGCGTGCAAGCACTCA----GCC---GA-TCGGAGAGGCATAATGC
251 TAAGTCAACCCAAGAAACGAGCGTGCGGGCACTCAGCTGGCCAGAGAGGCGGAGAGGCATAATGC
* ** * *
26559834 GTAAGCCGGGGATCAGCCTGGTCCCCTTCTGCGTGCTGTCGATCCC
316 GCAAGCCAAGGATCAGCCTGATCCCCTTCTGCGTGCTGCCGATCCC
* * * * *
26559880 GTTACCGATCCTGCTGCCACAACCCCCAGTCCGGTTGGGGCTTAGACGTGGAATGTACTCCGTAT
1 GCTACCGATCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTACTCTGTAT
** * * *
26559945 GCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGGTCGGAGAGCCAGAATGCGCAAG
66 GCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATTCGTAAG
*
26560010 TCGGGGATCAGCCCGATCCCTCCTGCGTGCTGTCGATCCTGCTACAGCAACCCTCGATCCGGTCT
131 TCGGGGATCAGCCCGGTCCCTCCTGCGTGCTGTCGATCCTGCTAC-GCAACCCTCGATCCGGTCT
* *
26560075 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGGATGAACTACGTATGCCTAGGTCAA
195 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT-CGTATGCCTAAGTCAA
* * * * *
26560140 CCCACGAAATGAACGTACGGGCACTCAGCTGGCCAGAGAGGCGGGCCGAAGAGTCATAATGCGCA
259 CCCAAGAAACGAGCGTGCGGGCACTCAGCTGGCCAGAGAGGC--G--G-AGAGGCATAATGCGCA
* *
26560205 ATCCAAGGATCAGGCC-GAT-CCCTCTCTGTGTGCTGCCGATCCC
319 AGCCAAGGATCA-GCCTGATCCCCT-TCTGCGTGCTGCCGATCCC
* * * *
26560248 GCTGCC-AGTCCTGCTGCCACAACCCTCGGTCTGGCTGGGGCATAGATGTGGAATGTACTCTGTA
1 GCTACCGA-TCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTACTCTGTA
* * ** *
26560312 TGCCTAAGCCAACCCACAAAATGAGCGTACGGGTGCTCAGCCTATCGGAGAGGTAGAATTCGTAA
65 TGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATTCGTAA
* * *
26560377 GTCGGGGATCAGCCCGGT-CCTCCCTGCGTGCTGCCGATCTTGCTATCGCAACCCTCGATCCGAT
130 GTCGGGGATCAGCCCGGTCCCT-CCTGCGTGCTGTCGATCCTGCTA-CGCAACCCTCGATCCGGT
26560441 -TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGT
193 CT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT-CGTATGCCTAAGT
* * * *
26560505 CAACCCAAGAAACGAGCGTGCGGACTCTCAGCTGACTAGAGAGG
256 CAACCCAAGAAACGAGCGTGCGGGCACTCAGCTGGCCAGAGAGG
26560549 TAGGATGCGT
Statistics
Matches: 562, Mismatches: 78, Indels: 45
0.82 0.11 0.07
Matches are distributed among these distances:
353 1 0.00
354 100 0.18
355 138 0.25
356 3 0.01
359 3 0.01
362 2 0.00
363 1 0.00
365 1 0.00
367 10 0.02
368 299 0.53
369 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (361 bp):
GCTACCGATCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACGTGGAATGTACTCTGTAT
GCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATTCGTAAG
TCGGGGATCAGCCCGGTCCCTCCTGCGTGCTGTCGATCCTGCTACGCAACCCTCGATCCGGTCTG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCGTATGCCTAAGTCAACC
CAAGAAACGAGCGTGCGGGCACTCAGCTGGCCAGAGAGGCGGAGAGGCATAATGCGCAAGCCAAG
GATCAGCCTGATCCCCTTCTGCGTGCTGCCGATCCC
Found at i:26560475 original size:26 final size:26
Alignment explanation
Indices: 26560446--26560498 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26560436 CCGATTCGAT
26560446 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26560472 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26560498 C
1 C
26560499 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26561587 original size:158 final size:158
Alignment explanation
Indices: 26561217--26561694 Score: 410
Period size: 158 Copynumber: 3.0 Consensus size: 158
26561207 AAAAACTCCG
* * * * *
26561217 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGC
1 TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGAGGCAGAATACGC
* * **
26561282 AAGCCACAGATTGACCCGATCCCCCCTGCGTGCTATCAATCCTGCTGCCGTAACCCTCAGTCCGA
66 AAGCCACAGATCGACCCGATCCCCCCTGCGTGCTACCAATCCTGCTGCCACAACCCTCAGTCCGA
* * * *
26561347 TCCGATCTTAGATTGGAAATGAACTCCG
131 TCCGAGCTTAGAATGGAAATGAACACCC
** * * * * * * *
26561375 TATGTATAAGTCAACCCATGAAACGAGCGTACGGGCACTGAACCGA-CTGAAGAGGCATAATACG
1 TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCAG-AGAGGCAGAATACG
* * * ** *
26561439 CAAGCCGA-GGATCGACTCGGTCCCCCTCTGCGTGCTACCGGTCC-GCTGCCACAACCCTCGGTC
65 CAAGCC-ACAGATCGACCCGATCCCCC-CTGCGTGCTACCAATCCTGCTGCCACAACCCTCAGTC
* ** * *
26561502 CGGTTGGGGCTTAGACATGG-AATGAGCACCC
128 CGATCCGAGCTTAGA-ATGGAAATGAACACCC
* * * *
26561533 TATGCCTAAACCAACCCATGAAACGAGCGTGCAGGTGCTCAGCCGATCAGAGAGGCAGAATATGC
1 TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGAGGCAGAATACGC
** * * * * * * *
26561598 AAGCCAGGGATC-AGCCCGAT-CCCCCTACGTGCTATCGATCTTGCTGCCGCAACCCTCGGTCCA
66 AAGCCACAGATCGA-CCCGATCCCCCCTGCGTGCTACCAATCCTGCTGCCACAACCCTCAGTCCG
* * * * *
26561661 ATCCGATCTTAGACTGGGAATGAACTCCG
130 ATCCGAGCTTAGAATGGAAATGAACACCC
26561690 TATGC
1 TATGC
26561695 TTAGACTGGG
Statistics
Matches: 249, Mismatches: 62, Indels: 19
0.75 0.19 0.06
Matches are distributed among these distances:
156 16 0.06
157 48 0.19
158 165 0.66
159 20 0.08
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGAGGCAGAATACGC
AAGCCACAGATCGACCCGATCCCCCCTGCGTGCTACCAATCCTGCTGCCACAACCCTCAGTCCGA
TCCGAGCTTAGAATGGAAATGAACACCC
Found at i:26561697 original size:26 final size:26
Alignment explanation
Indices: 26561668--26561720 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
26561658 CCAATCCGAT
26561668 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26561694 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26561720 C
1 C
26561721 CTAACTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26562052 original size:26 final size:26
Alignment explanation
Indices: 26562023--26562075 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26562013 CCGATCCAAT
26562023 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* * *
26562049 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
26562075 C
1 C
26562076 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:26562408 original size:26 final size:26
Alignment explanation
Indices: 26562379--26562431 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26562369 CCGGTCCGAT
*
26562379 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
26562405 CTTAGACTGGGGATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26562431 C
1 C
26562432 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:26563510 original size:159 final size:158
Alignment explanation
Indices: 26563160--26563564 Score: 399
Period size: 159 Copynumber: 2.6 Consensus size: 158
26563150 ACGCCTAAGT
* * *
26563160 CAACCCACGAAACGAGCGTACGGGCACTCAGTCGATCGGAGAGGCAGAATGCGCAAGTCGGGGAT
1 CAACCCACGAAACGAGCGTACGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGTCGGGGAT
* * * ** * * * * *
26563225 CGACCCGGTCCCCCCTACGTGCTGTCAATCCTGCTACTGCAACCGTCGATCTGGTCCGATCTTAG
66 CGACCCGATCCCCCCTGCGTGCTGTCAATCCCGCTACCACAACCCTCGATCCGCTCCGAGCTTAA
** *
26563290 ACTGGGAATGAACTCTGTATGCATAATT
131 ACTGGGAATGAACTCACTATGCATAATC
* * * * *
26563318 CAACCCACGAAATGAGCGTACGGGAGCTAAGCCGGTCGAAGAGGCACAATGCGCAAGTCGGGGAT
1 CAACCCACGAAACGAGCGTACGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGTCGGGGAT
* * * * *
26563383 CGACCCGATCCCCCTCTGCATGCTGTCGATCCCGCTGCCACAACCCTCGATCCGACT-GGGGCTT
66 CGACCCGATCCCCC-CTGCGTGCTGTCAATCCCGCTACCACAACCCTCGATCCG-CTCCGAGCTT
*
26563447 AAACAT-GGAAT-AAGCTCACTATGCCTCAA-C
129 AAAC-TGGGAATGAA-CTCACTATGCAT-AATC
* * * * * *
26563477 CAACCCACGAAACG-GACGTGCGGGCGCTCAGCCGACCGAAAAGGTAGAATGCGTAAGTCGAGGA
1 CAACCCACGAAACGAG-CGTACGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGTCGGGGA
*
26563541 TCGGCCC-AGTCCCCCCTGCGTGCT
65 TCGACCCGA-TCCCCCCTGCGTGCT
26563565 ACCGATCCTA
Statistics
Matches: 200, Mismatches: 40, Indels: 14
0.79 0.16 0.06
Matches are distributed among these distances:
158 82 0.41
159 114 0.57
160 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (158 bp):
CAACCCACGAAACGAGCGTACGGGCGCTCAGCCGATCGAAGAGGCAGAATGCGCAAGTCGGGGAT
CGACCCGATCCCCCCTGCGTGCTGTCAATCCCGCTACCACAACCCTCGATCCGCTCCGAGCTTAA
ACTGGGAATGAACTCACTATGCATAATC
Found at i:26564566 original size:158 final size:159
Alignment explanation
Indices: 26564126--26564605 Score: 443
Period size: 158 Copynumber: 3.0 Consensus size: 159
26564116 ACCGATCCCC
* * * * ** *
26564126 CTGCCAGTCCTGCTGCCACAACCCTCGGTCC-GACTGGGGCTTAGA-TGTGGAATGTACTCCGTA
1 CTGCCAATCCTGCTACCACAACCCTCGATCCAGTCT-GATCTTAGACTG-GGAATGAACTCCGTA
* * * * * ** * * *
26564189 CGCCTAAGCCAACCCACGAAATGAGTATGCCAGCGTTCAGCCGGTTGGAGAGACAGAATGCACAA
64 TGCCTAAGTCAACCCACAAAATAAGTGTGCGGGCGTTCAGCCGGTCGAAGAGACAGAATGCGCAA
*
26564254 GTCGGGGATCG-GCTCGATCCCCCCTGCGTG
129 GTCGGGGATCGACCTCGATCCCCCCTGCGTG
* * ** *
26564284 CTGCCGATCTTGCTACCGTAACCCTCGATCCAGTTTGATCTTAGACTGGGAATGAACTCCGTATG
1 CTGCCAATCCTGCTACCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * * * * * * * *
26564349 CCTAAGTCAAGCCACGAAACGAA-CGTACGGGTGCTCAACC-GACCAGAGAGACAGGATGCGTAA
66 CCTAAGTCAACCCAC-AAAATAAGTGTGCGGGCGTTCAGCCGGTCGA-AGAGACAGAATGCGCAA
* * *
26564412 GCCGGGGATCGACCTTG-TCCCCCCTGTGTG
129 GTCGGGGATCGACCTCGATCCCCCCTGCGTG
* * * * *
26564442 CTGTCAATCCTGCTATCACAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCTGTATG
1 CTGCCAATCCTGCTACCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
26564507 CATAAGTCAACCCACAAAATAAGTGTGCGGGCGTTGAGCCGGTCGAAGAGGCATAATGCGCAAGT
66 CCTAAGTCAACCCACAAAATAAGTGTGCGGGCGTTCAGCCGGTCGAAGAGACAGAATGCGCAAGT
26564572 CGGGGATCGA-CTCGATCCCCCTCTGCGTG
131 CGGGGATCGACCTCGATCCCCC-CTGCGTG
26564601 CTGCC
1 CTGCC
26564606 GGTCTCGCTG
Statistics
Matches: 245, Mismatches: 68, Indels: 17
0.74 0.21 0.05
Matches are distributed among these distances:
157 9 0.04
158 213 0.87
159 23 0.09
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (159 bp):
CTGCCAATCCTGCTACCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCCACAAAATAAGTGTGCGGGCGTTCAGCCGGTCGAAGAGACAGAATGCGCAAGT
CGGGGATCGACCTCGATCCCCCCTGCGTG
Found at i:26565268 original size:26 final size:26
Alignment explanation
Indices: 26565227--26565279 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26565217 CTGATCCGAT
26565227 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26565253 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCATATG
26565279 C
1 C
26565280 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26565856 original size:355 final size:353
Alignment explanation
Indices: 26565047--26565963 Score: 1040
Period size: 355 Copynumber: 2.6 Consensus size: 353
26565037 TCCCACTGTG
* ** * *
26565047 ACAACCTTCGATCCGGTTGGGGCTTAGACA-TGGAATG-AGCTCCCTATGCCTAAGCCAACCCAT
1 ACAACCCTCGATCCGACTGGGGCTTAGA-AGTGAAATGTA-CTCCGTATGCCTAAGCCAACCCAT
* * * * * * * * *
26565110 GAAATGGGCGTATGGGCACTCAGCCAGTCGAAAAGGCAGAATGCACAAGCCGAGGATC-AGTCTG
64 GAAACGAGCGTACGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCAG-GGATCGA-TCCG
* * *
26565174 ATCCCCCCTACGTGCTGCTGATCCTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGA
127 ATCCCCCCTGCGTGCTGCTGATCCTGCTA-CGCAACCCTCGATCCGATCCGATCTTAGACTGGGA
* * *
26565239 ATGAACTCCATATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
191 ATGAACTCCGTATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCG
* * * * * *
26565304 TACGGGCGCTCAGCCGGCCGAAGAGGCATAATGCGTAACCCAGCGATCAGCCCGATCTCCCTCTG
256 TACGGGCACTCAACCGGCCGAAGAGGCATAATGCGCAACCCAACGATCAGCCCGATCCCCCGCTG
*
26565369 CATGCTACCAATCCCGCTACAGGTCCTGCTGCC
321 CATGCTACCAATCCCGCTACAGGTCCCGCTGCC
* * * *
26565402 ATAACCCTCGATCCGACTGGGGCTTAGAAGTGGAATGTACTCCGTATGCCTAAGCCAATCCACGA
1 ACAACCCTCGATCCGACTGGGGCTTAGAAGTGAAATGTACTCCGTATGCCTAAGCCAACCCATGA
* ** * * * * * * *
26565467 AACGTGCGTACGGGTGCTAAACCGGCCAGAGAGGCAGAATGCGCAAGTTAGGGATCGATCCGGTT
66 AACGAGCGTACGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAG-CAGGGATCGATCCGATC
* * * * *
26565532 CCCCCTGCATGCTGCCGATCCTGTTGTCGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATG
130 CCCCCTGCGTGCTGCTGATCCTGCT-ACGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATG
*
26565597 AACTCCGTATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGC
194 AACTCCGTATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTAC
* * * * * * *
26565662 GGGCACTCAACCGGCTGGAGAGGCATAATGCGCAAGCCAATGATCAGCTCGGTCCCCCGCTGCGT
259 GGGCACTCAACCGGCCGAAGAGGCATAATGCGCAACCCAACGATCAGCCCGATCCCCCGCTGCAT
* * *
26565727 GCTATCGATCCCGCTGCCA-GTCCCGCTGCC
324 GCTACCAATCCCGCT-ACAGGTCCCGCTGCC
* *
26565757 ACAACCCTCTG-TCCGGCTGGGGCTTA-AACGTGAAATGTACTCTGTATGCCTAAGCCAACCCAT
1 ACAACCCTC-GATCCGACTGGGGCTTAGAA-GTGAAATGTACTCCGTATGCCTAAGCCAACCCAT
* * * *
26565820 GAAACGAGCGTGCAGGCACTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCTG
64 GAAACGAGCGTACGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAG-CAGGGATCGATCC-G
* * * *
26565884 ATCCCCCCTGCGTGCTGTTGATCCTACTACTGCAACCCTC-AGTCCGGTTCGATCTTAGACTGGG
127 ATCCCCCCTGCGTGCTGCTGATCCTGCTAC-GCAACCCTCGA-TCCGATCCGATCTTAGACTGGG
*
26565948 GATGAACTCCGTATGC
190 AATGAACTCCGTATGC
26565964 ATAAGTCAAC
Statistics
Matches: 466, Mismatches: 85, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
354 7 0.02
355 453 0.97
356 6 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (353 bp):
ACAACCCTCGATCCGACTGGGGCTTAGAAGTGAAATGTACTCCGTATGCCTAAGCCAACCCATGA
AACGAGCGTACGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCAGGGATCGATCCGATCC
CCCCTGCGTGCTGCTGATCCTGCTACGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAA
CTCCGTATGCTTAGACTAAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGG
GCACTCAACCGGCCGAAGAGGCATAATGCGCAACCCAACGATCAGCCCGATCCCCCGCTGCATGC
TACCAATCCCGCTACAGGTCCCGCTGCC
Found at i:26566148 original size:159 final size:156
Alignment explanation
Indices: 26565739--26566194 Score: 467
Period size: 159 Copynumber: 2.9 Consensus size: 156
26565729 TATCGATCCC
* *
26565739 GCTGCC-AGTCCCGCTGCCACAACCCTCTG-TCCGGCTGGGGCTTAAACGTGAAATGTACT-CTG
1 GCTGCCGA-TCCCGCTGCCACAACCCTC-GATCCGGCTGGGGCTTAGAC-TGGAATG-ACTCCT-
* * *
26565801 TATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAGTCGGTCGGAGAGGCAGAATGCGC
61 TATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGC
*
26565866 AAGCCGGGGATCGACCTGATCCCCCCTGCGT
126 AAGCCGGGGATCGACCAGATCCCCCCTGCGT
** ** * ** * * ** * *
26565897 GCTGTTGATCCTACTACTGCAACCCTC-AGTCCGGTTCGATCTTAGACTGGGGATGAACTCCGTA
1 GCTGCCGATCCCGCTGCCACAACCCTCGA-TCCGGCTGGGGCTTAGACT-GGAATG-ACTCCTTA
* * * * * * * *
26565961 TGCATAAG-TCAACCCATGAAATGAGCGTGCGGGTGCTGAGCCGGCCGAAGAGGCATAATGCGCA
63 TGCCTAAGCT-AACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCA
26566025 AGCCGGGGATCGACCCAG-TCCCCCTCTGCGT
127 AGCCGGGGATCGA-CCAGATCCCCC-CTGCGT
26566056 GCTGCCGATCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAGCTCCTTAT
1 GCTGCCGATCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGAC-TGGAATGA-CTCCTTAT
* *
26566121 GCCTAAGCTAACCCACGAAAC-AGGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCACAA
64 GCCTAAGCTAACCCATGAAACGA-GCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAA
*
26566185 GCCAGGGATC
128 GCCGGGGATC
26566195 AGTCCGGTCC
Statistics
Matches: 233, Mismatches: 52, Indels: 25
0.75 0.17 0.08
Matches are distributed among these distances:
157 1 0.00
158 113 0.48
159 116 0.50
160 3 0.01
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (156 bp):
GCTGCCGATCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACTGGAATGACTCCTTATGC
CTAAGCTAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCC
GGGGATCGACCAGATCCCCCCTGCGT
Found at i:26566282 original size:26 final size:26
Alignment explanation
Indices: 26566253--26566305 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26566243 CCGGTCTGAT
26566253 CTTAGACTGTGA-AAGAACTCCGCATA
1 CTTAGACTG-GAGAAGAACTCCGCATA
* *
26566279 CTTAGACTGGAGATGAACTCCGTATA
1 CTTAGACTGGAGAAGAACTCCGCATA
26566305 C
1 C
26566306 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAGAAGAACTCCGCATA
Found at i:26566360 original size:13 final size:13
Alignment explanation
Indices: 26566342--26566368 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26566332 CAGGCGCTCA
26566342 GCCGATCGGAGAG
1 GCCGATCGGAGAG
26566355 GCCGATCGGAGAG
1 GCCGATCGGAGAG
26566368 G
1 G
26566369 AATAATGCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.48, T:0.07
Consensus pattern (13 bp):
GCCGATCGGAGAG
Found at i:26566672 original size:26 final size:26
Alignment explanation
Indices: 26566621--26566672 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26566611 CCGGATCGAT
*
26566621 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
26566647 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26566673 TCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:26567003 original size:26 final size:26
Alignment explanation
Indices: 26566974--26567027 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
26566964 TCCGGTTCGA
*
26566974 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCATAT
*
26567000 GCTTAGACTGGGGATGAACTCCATAT
1 GCTTAGACTGGGAATGAACTCCATAT
26567026 GC
1 GC
26567028 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCATAT
Found at i:26567431 original size:368 final size:367
Alignment explanation
Indices: 26566717--26567435 Score: 965
Period size: 368 Copynumber: 2.0 Consensus size: 367
26566707 TTAGCCGGCC
* * * * * * *
26566717 GGAGAGGCATAATGCGTAAGTCGGGGATCAGCCCGGTCCCCTCTGCGTGTTGTCGATCCCGCTCC
1 GGAGAGGCATAATGCGCAAGTCGGGGATCAACCCAGTCCCCTCTGCGTGCTGCCAATCCCACTCC
* * * * * *
26566782 CAGTCCTGCTGCCATAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGTACTCCGTATGCCTA
66 CAGTCCTACTACCACAACCATCAGTCCGACTAGGGCTTAGACATGGAATGTACTCCATATGCCTA
* *
26566847 AGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCAAGCTGGAGAGGCAGAATGCACAAACCTGG
131 AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAAGCTGGAGAGGCAGAATGCACAAACCGGG
* * ** * * ** *
26566912 GATCGATCCGGTCCCCCCTGCGTGCTGTCAATCCTACTATCGTAACCCTCGATCCGGTTCGAGCT
196 GATCGACCCGGTCCCCCCTGCATGCTACCAATCCTACTACCGCAACCCTCGATCCAATCCGAGCT
*
26566977 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCAC
261 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAC
26567042 AAAACAAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCCGGTT
326 AAAACAAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCCGGTT
*
26567084 GGAGAGGCATAATGCGCAAGTCGGGGATCAACCCAGTCCCCCTCTGCGTGCTGCCAATCCCACTG
1 GGAGAGGCATAATGCGCAAGTCGGGGATCAACCCAGT-CCCCTCTGCGTGCTGCCAATCCCACTC
* * * *
26567149 TC-GATCCTACTACCACAACCATCGGTCCGACTGGGGCTTAGACGTGGAATGTACTCCATATGCC
65 CCAG-TCCTACTACCACAACCATCAGTCCGACTAGGGCTTAGACATGGAATGTACTCCATATGCC
* * * ** * *
26567213 TAAGCCGACCCACGAAACGAGCGTGCGGGCGCTCAGC-CGACTGGAGATGTGGAATGCGCAAGCC
129 TAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAAG-CTGGAGAGGCAGAATGCACAAACC
* * ** *
26567277 GGGGATCGACCCGGTCCCCCCTGCATGCTACCGATCTTGTTGCCGCAACCCTCGATCCAATCCGA
193 GGGGATCGACCCGGTCCCCCCTGCATGCTACCAATCCTACTACCGCAACCCTCGATCCAATCCGA
* * *
26567342 TCTTAGACTGGGAATGAACTCCGTATGCTTTGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
258 GCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
* * *
26567407 TACGAAATAAGCGTGCGGGCGCTCAGTCG
323 CACAAAACAAGCGTGCGGGCGCTCAGTCG
26567436 ACCAGTTATT
Statistics
Matches: 301, Mismatches: 48, Indels: 5
0.85 0.14 0.01
Matches are distributed among these distances:
367 36 0.12
368 265 0.88
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (367 bp):
GGAGAGGCATAATGCGCAAGTCGGGGATCAACCCAGTCCCCTCTGCGTGCTGCCAATCCCACTCC
CAGTCCTACTACCACAACCATCAGTCCGACTAGGGCTTAGACATGGAATGTACTCCATATGCCTA
AGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAAGCTGGAGAGGCAGAATGCACAAACCGGG
GATCGACCCGGTCCCCCCTGCATGCTACCAATCCTACTACCGCAACCCTCGATCCAATCCGAGCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAC
AAAACAAGCGTGCGGGCGCTCAGTCGGTCGGAGAGGCCGGTT
Found at i:26567765 original size:19 final size:19
Alignment explanation
Indices: 26567710--26567769 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
26567700 ATTATTTAAT
26567710 TATTATTATTATATTAAATAA
1 TATTATTATTATA--AAATAA
*
26567731 TA--ATAATTAT--AATAA
1 TATTATTATTATAAAATAA
26567746 TATTATTATTATAAAATAA
1 TATTATTATTATAAAATAA
26567765 TATTA
1 TATTA
26567770 AATCTAAGGG
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
15 7 0.21
17 7 0.21
19 17 0.52
21 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
TATTATTATTATAAAATAA
Found at i:26568142 original size:12 final size:12
Alignment explanation
Indices: 26568127--26568161 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
26568117 TTTTTTAGAA
26568127 TATTAATTAAAC
1 TATTAATTAAAC
26568139 TATTTAATTAAAC
1 TA-TTAATTAAAC
*
26568152 TACTAATTAA
1 TATTAATTAA
26568162 TAATATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (12 bp):
TATTAATTAAAC
Found at i:26568242 original size:13 final size:12
Alignment explanation
Indices: 26568223--26568257 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
26568213 ATATTTAAAA
26568223 AATTTATTATAT
1 AATTTATTATAT
*
26568235 AGTATTATTATAT
1 AAT-TTATTATAT
26568248 AATTTATTAT
1 AATTTATTAT
26568258 TTTATCAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (12 bp):
AATTTATTATAT
Found at i:26569378 original size:54 final size:52
Alignment explanation
Indices: 26569279--26569380 Score: 125
Period size: 54 Copynumber: 1.9 Consensus size: 52
26569269 AAATTATTTA
* *
26569279 ATTATTATTTTATCAAATAAAATTAATCAATAATATTTAACTAATAAACTACT
1 ATTATTATATTATCAAATAAAATTAA-CAATAATATTTAAATAATAAACTACT
* *
26569332 ATTATTATATTATCATAATATAATTAA-AATTATTTATTTAAATAATAAA
1 ATTATTATATTATCA-AATAAAATTAACAA-TA-ATATTTAAATAATAAA
26569381 ATATCTCAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
52 2 0.05
53 16 0.38
54 24 0.57
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (52 bp):
ATTATTATATTATCAAATAAAATTAACAATAATATTTAAATAATAAACTACT
Found at i:26569875 original size:179 final size:177
Alignment explanation
Indices: 26569467--26570087 Score: 630
Period size: 179 Copynumber: 3.5 Consensus size: 177
26569457 TTATCGATCA
* * * * * *
26569467 AGTTGAAATAGTTATAATTATCTAAATAATTATCTATTTCAAAACATTATGACATTTTGTTTTGT
1 AGTTCAAATAGTTATGATTATTTAAACAATTATCTATTTCAAATCATTATGACATTTTATTTTGT
* * * * *
26569532 CATAAAACAATTGGTTCTATTCATGCAAGTGTATTTTGAATAAAAT-ATAT-AAATTTATTAATA
66 CATAAAACAATTGTTTCTATTCATACAAGT-TATTTGGAATAAAATAAT-TCTAATTAATTAATA
* * * ** * *
26569595 TTCCAAAACTTAATAAGTATAA-TTTTAGAAAATAAAGCTATTT-TTGAAC
129 TTCCAAAA-TTAATAATTAAAAGATTTA-AAAATAAATTTGTTTACTGAAC
* * * *
26569644 ACATTCAAATAGTTATGACTATTTTAACAATTATCTATTTCAAATCATTATGACCA-TTTGTTTT
1 A-GTTCAAATAGTTATGATTATTTAAACAATTATCTATTTCAAATCATTATGA-CATTTTATTTT
* *
26569708 GTCATAAACCAATTGTTTCTATTCAAACAAGCTTATTTGGAATAAAATAATTCTAATTAATTAAT
64 GTCATAAAACAATTGTTTCTATTCATACAAG-TTATTTGGAATAAAATAATTCTAATTAATTAAT
**
26569773 ATTCCAAAATTAATAATTAAAAGATTTAAAAATAAATTTGTTTACTGAGTG
128 ATTCCAAAATTAATAATTAAAAGATTTAAAAATAAATTTGTTTACTGA-AC
* *
26569824 AGTTCAAATAGTTATGATTGTTTAAACAATTATTTATTTCAAATCATTATGATC-TTTTATTTTG
1 AGTTCAAATAGTTATGATTATTTAAACAATTATCTATTTCAAATCATTATGA-CATTTTATTTTG
* * *
26569888 TTATAAAACAATTGTTTCTATTCATACAAGTTTATTTGGAATAAAATAATACTAA-TATATTAAC
65 TCATAAAACAATTGTTTCTATTCATACAAG-TTATTTGGAATAAAATAATTCTAATTA-ATTAAT
** * * * **
26569952 ATTGTAAAAATTAATAAGTT-GAAGATTTAAAAAATTAATTAGTTTACCAAACC
128 ATT-CCAAAATTAATAA-TTAAAAGATTT-AAAAATAAATTTGTTTACTGAA-C
* * * **
26570005 AGTTCAAATAGTCATG-TTCATTTGAACTATTATCTATTTCAAATTGTTATGACATTTTATTTTG
1 AGTTCAAATAGTTATGATT-ATTTAAACAATTATCTATTTCAAATCATTATGACATTTTATTTTG
**
26570069 TTGTAAAACAATTGTTTCT
65 TCATAAAACAATTGTTTCT
26570088 TATCGATCAA
Statistics
Matches: 374, Mismatches: 54, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
177 1 0.00
178 118 0.32
179 144 0.39
180 22 0.06
181 89 0.24
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.42
Consensus pattern (177 bp):
AGTTCAAATAGTTATGATTATTTAAACAATTATCTATTTCAAATCATTATGACATTTTATTTTGT
CATAAAACAATTGTTTCTATTCATACAAGTTATTTGGAATAAAATAATTCTAATTAATTAATATT
CCAAAATTAATAATTAAAAGATTTAAAAATAAATTTGTTTACTGAAC
Found at i:26570865 original size:17 final size:17
Alignment explanation
Indices: 26570823--26570875 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
26570813 AAATAATTGT
26570823 TATAATTAA--ATAATAA
1 TATAATTAATTATAAT-A
*
26570839 TCTAATTTAATTATAATA
1 TATAA-TTAATTATAATA
*
26570857 TATAATTAATTAAAATA
1 TATAATTAATTATAATA
26570874 TA
1 TA
26570876 ATATGAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 4 0.13
17 17 0.55
18 5 0.16
19 5 0.16
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
TATAATTAATTATAATA
Found at i:26570866 original size:22 final size:23
Alignment explanation
Indices: 26570825--26570879 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
26570815 ATAATTGTTA
26570825 TAATTA-AATA-ATAATCTAATT
1 TAATTATAATATATAATCTAATT
26570846 TAATTATAATATATAAT-TAATT
1 TAATTATAATATATAATCTAATT
* *
26570868 AAAATATAATAT
1 TAATTATAATAT
26570880 GAATATTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 5 0.17
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
TAATTATAATATATAATCTAATT
Found at i:26571027 original size:13 final size:13
Alignment explanation
Indices: 26571011--26571035 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26571001 AATACAAATA
26571011 AATCTAATTATTT
1 AATCTAATTATTT
26571024 AATCTAATTATT
1 AATCTAATTATT
26571036 AAATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
AATCTAATTATTT
Found at i:26571705 original size:171 final size:170
Alignment explanation
Indices: 26571375--26572018 Score: 469
Period size: 181 Copynumber: 3.6 Consensus size: 170
26571365 CCTATAGCCT
* * * * *
26571375 TAACTATTTAAATTGGTT-TAGCAAACAAATTTATTTTTTAAATTTATTAGTTATTAATTTTT-A
1 TAACTATTTGAATTGGTTCGA-TAAACAAATTTATTTTTTAAATTTTTTACTTATTAATTTTTGA
* * * * * * * * *
26571438 GAATATTATTACATTAGTGTTATTTTATTTC-AGATAAACTTGTATGAACAGAAATAATTATTTT
65 -AATATTAATAAATTAGTATTATTTTATTTCGA-ATAAGCTAGTATGATCAAAAACAATTGTTTT
** *
26571502 ATAAAAGAAAAAAAGGTT-ATAA-GAAATTGAAATACAAATAATCA
128 ATGTAA-AAAAAAA-GTTCATAATG-ATTTGAAATACAAATAATCA
*
26571546 TAACTATTTGAATTGGTTCGATAAACAAATTTATTTTTTAAATTTTTTACTTACTAATTTTTGAA
1 TAACTATTTGAATTGGTTCGATAAACAAATTTATTTTTTAAATTTTTTACTTATTAATTTTTGAA
* * *
26571611 ATATTAATAAATTAATATTATTTTATTACGAATAAGCTAGTATGATGAAAAACAATTGTTTTATG
66 ATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTAGTATGATCAAAAACAATTGTTTTATG
* *
26571676 TCAAAACAAAAGTTCATAATGATTTGAAATAGATAAATGTTCAAATGACCA
131 T-AAAAAAAAAGTTCATAATGATTTGAAAT--ACAAA---T--AAT---CA
* * * ** * * * * * *
26571727 TAATTATTTTAACTAATTCGATAAACTGAA-TTATGTTTTAAATCTTTAACTTATCAATTTTTAA
1 TAACTATTTGAATTGGTTCGATAAAC-AAATTTATTTTTTAAATTTTTTACTTATTAATTTTTGA
* * * * * ** *
26571791 AATATTAATAAAGTAGTATTATTTTATTTGGGACAAGTTTTTATGATCTAAAACAATTGTTTTAT
65 AATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTAGTATGATCAAAAACAATTGTTTTAT
* * *
26571856 GATAAAATAAAAGGTCATAATGATTTTAGATAGATAATTATTCAAATAGTCA
130 G-TAAAAAAAAAGTTCATAATGA--TT---T-GA-AA-TA--CAAATAATCA
* * * *
26571908 TAACTGTTTGAACTT-GTTCGGTAAATAAATTTATTTTTTAAAATTTCTTACTTATTAATTTTTT
1 TAACTATTTGAA-TTGGTTCGATAAACAAATTTATTTTTT-AAATTTTTTACTTATTAA-TTTTT
* *
26571972 G-AATGTTAATAAATTAGTATTATTTTATTTTGAATAAGC-ATGTATGA
63 GAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTA-GTATGA
26572019 ATTGAAACAA
Statistics
Matches: 368, Mismatches: 72, Indels: 55
0.74 0.15 0.11
Matches are distributed among these distances:
170 3 0.01
171 123 0.33
172 6 0.02
173 4 0.01
176 1 0.00
178 3 0.01
180 2 0.01
181 151 0.41
182 55 0.15
183 7 0.02
184 2 0.01
186 2 0.01
187 3 0.01
188 2 0.01
189 4 0.01
ACGTcount: A:0.40, C:0.06, G:0.10, T:0.43
Consensus pattern (170 bp):
TAACTATTTGAATTGGTTCGATAAACAAATTTATTTTTTAAATTTTTTACTTATTAATTTTTGAA
ATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTAGTATGATCAAAAACAATTGTTTTATG
TAAAAAAAAAGTTCATAATGATTTGAAATACAAATAATCA
Found at i:26571876 original size:181 final size:181
Alignment explanation
Indices: 26571544--26572018 Score: 496
Period size: 181 Copynumber: 2.6 Consensus size: 181
26571534 TACAAATAAT
* **
26571544 CATAACTATTTGAATTGGTTCGATAAAC-AAATTTATTTTTTAAATTTTTTACTTA-CTAATTTT
1 CATAACTATTTGAACTAATTCGATAAACTAAATTTATTTTTTAAA-TTTTTACTTATC-AATTTT
* * * * *
26571607 TGAAATATTAATAAATTAATATTATTTTATTACGAATAAGCTAGTATGATGAAAAACAATTGTTT
64 TAAAATATTAATAAATTAGTATTATTTTATTTCGAACAAGCTAGTATGATCAAAAACAATTGTTT
* *
26571672 TATGTCAAAACAAAAGTTCATAATGATTTGAAATAGATAAATGTTCAAAT-GAC
129 TATGTCAAAACAAAAGGTCATAATGATTTGAAATAGATAAATATTCAAATAG-C
* * * * *
26571725 CATAATTATTTTAACTAATTCGATAAACTGAA-TTATGTTTTAAATCTTTAACTTATCAATTTTT
1 CATAACTATTTGAACTAATTCGATAAACTAAATTTATTTTTTAAAT-TTTTACTTATCAATTTTT
* * * * ** *
26571789 AAAATATTAATAAAGTAGTATTATTTTATTTGGGACAAGTTTTTATGATCTAAAACAATTGTTTT
65 AAAATATTAATAAATTAGTATTATTTTATTTCGAACAAGCTAGTATGATCAAAAACAATTGTTTT
* * * * *
26571854 ATGAT-AAAATAAAAGGTCATAATGATTTTAGATAGATAATTATTCAAATAGT
130 ATG-TCAAAACAAAAGGTCATAATGATTTGAAATAGATAAATATTCAAATAGC
* ** * *
26571906 CATAACTGTTTGAACTTGTTCGGTAAA-TAAATTTATTTTTTAAAATTTCTTACTTATTAATTTT
1 CATAACTATTTGAACTAATTCGATAAACTAAATTTATTTTTT-AAATTT-TTACTTATCAATTTT
** * * *
26571970 TTGAATGTTAATAAATTAGTATTATTTTATTTTGAATAAGC-ATGTATGA
64 TAAAATATTAATAAATTAGTATTATTTTATTTCGAACAAGCTA-GTATGA
26572019 ATTGAAACAA
Statistics
Matches: 238, Mismatches: 47, Indels: 17
0.79 0.16 0.06
Matches are distributed among these distances:
180 4 0.02
181 174 0.73
182 60 0.25
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (181 bp):
CATAACTATTTGAACTAATTCGATAAACTAAATTTATTTTTTAAATTTTTACTTATCAATTTTTA
AAATATTAATAAATTAGTATTATTTTATTTCGAACAAGCTAGTATGATCAAAAACAATTGTTTTA
TGTCAAAACAAAAGGTCATAATGATTTGAAATAGATAAATATTCAAATAGC
Found at i:26573043 original size:10 final size:9
Alignment explanation
Indices: 26573023--26573088 Score: 52
Period size: 9 Copynumber: 7.6 Consensus size: 9
26573013 CTATTAATTC
26573023 TAATATAAT
1 TAATATAAT
26573032 TAATATTAAT
1 TAATA-TAAT
*
26573042 T-AT-TTAT
1 TAATATAAT
26573049 T-ATA-AAT
1 TAATATAAT
*
26573056 AAATATAAT
1 TAATATAAT
26573065 ATAATATATAT
1 -TAATATA-AT
26573076 TAA-ATAAT
1 TAATATAAT
26573084 TAATA
1 TAATA
26573089 ATTAGTTTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
7 8 0.17
8 8 0.17
9 14 0.30
10 14 0.30
11 2 0.04
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
TAATATAAT
Found at i:26573156 original size:26 final size:25
Alignment explanation
Indices: 26573120--26573183 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 25
26573110 TGTATATAAT
*
26573120 ATAATATATAATATACCA-ATTTATTAG
1 ATAAT-TATAATATA--ATATTGATTAG
26573147 ATAATTATAACTATAATATTGATTAG
1 ATAATTATAA-TATAATATTGATTAG
26573173 AT-ATTATAATA
1 ATAATTATAATA
26573184 AATTAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
24 2 0.06
25 8 0.24
26 15 0.44
27 9 0.26
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.42
Consensus pattern (25 bp):
ATAATTATAATATAATATTGATTAG
Found at i:26573786 original size:181 final size:175
Alignment explanation
Indices: 26573310--26573847 Score: 591
Period size: 176 Copynumber: 3.0 Consensus size: 175
26573300 TAATTATATA
* * * *
26573310 ATAATGATTTGAAATAGATAATTATTCTGATAGTCTTAACTATTTGAACTAGTTCGGCT-AACAT
1 ATAATGATTTGAAATAGATAATTATTCTAATAGTCATAACTATTTGAACTTGTTCGG-TAAACAG
** * * * ***
26573374 ATTTATTTTTTAAATCTCTTATTAATTTTTGAAATATTATTAAATTAGTATCATTTTAATCCAAA
65 ATTTATTTTTTAAATCTCTTATTAATTTTAAAAATATTAATAAA-TAGTATTATTTTATTTTGAA
* * * *
26573439 TAAGCTTGTATGAAAGTAAACAATTGTTGTATGACAAAA-TAAATATC
129 TAAACTTGTATGAAAG-AAACAATTGTTTTATGACAAAACAAAATGTC
* * * * ** *
26573486 ATTATGATTTGAGATAGATAATTGTTCAAATAGTCATAACTATTTGAA-TTGGTTTAGTAAATAG
1 ATAATGATTTGAAATAGATAATTATTCTAATAGTCATAACTATTTGAACTT-GTTCGGTAAACAG
* **
26573550 ATTTAGTTTTTAAATCTCTTATTAATTTTAAAAATATTAATAAATCAAAATTATTTTATTTTGAA
65 ATTTATTTTTTAAATCTCTTATTAATTTTAAAAATATTAATAAAT-AGTATTATTTTATTTTGAA
* *
26573615 T-AATTCTGTATGAACAGAAATAATTGTTTTATGACAAAACAAAATGTC
129 TAAACT-TGTATGAA-AGAAACAATTGTTTTATGACAAAACAAAATGTC
* * * *
26573663 ATAATAATTTGAAATAGATAATTATTCTAATAGACATGACCATTTGAACTTGTTCGGTAAACAGA
1 ATAATGATTTGAAATAGATAATTATTCTAATAGTCATAACTATTTGAACTTGTTCGGTAAACAGA
**
26573728 TTTATTTTTTAAATCTCCTACCTATTAATTTGCAAAATATTAATAAAGTAGTATTATTTTATTTT
66 TTTATTTTTTAAATCT-CT---TATTAATTTTAAAAATATTAATAAA-TAGTATTATTTTATTTT
* *
26573793 GAATAAACTTGTATAAATAGAAACAATTGTTTTATAACAAAACAAAA-GATC
126 GAATAAACTTGTATGAA-AGAAACAATTGTTTTATGACAAAACAAAATG-TC
26573844 ATAA
1 ATAA
26573848 CTATTAGAAA
Statistics
Matches: 299, Mismatches: 49, Indels: 23
0.81 0.13 0.06
Matches are distributed among these distances:
175 5 0.02
176 130 0.43
177 74 0.25
178 4 0.01
180 1 0.00
181 81 0.27
182 4 0.01
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (175 bp):
ATAATGATTTGAAATAGATAATTATTCTAATAGTCATAACTATTTGAACTTGTTCGGTAAACAGA
TTTATTTTTTAAATCTCTTATTAATTTTAAAAATATTAATAAATAGTATTATTTTATTTTGAATA
AACTTGTATGAAAGAAACAATTGTTTTATGACAAAACAAAATGTC
Found at i:26574100 original size:12 final size:13
Alignment explanation
Indices: 26574076--26574115 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
26574066 ATATTAATCT
*
26574076 ATTTTATTAATTA
1 ATTTAATTAATTA
26574089 ATTTAATT-ATTA
1 ATTTAATTAATTA
*
26574101 AATTAATTAATTA
1 ATTTAATTAATTA
26574114 AT
1 AT
26574116 GTTATAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
ATTTAATTAATTA
Found at i:26574104 original size:17 final size:17
Alignment explanation
Indices: 26574055--26574113 Score: 59
Period size: 17 Copynumber: 3.5 Consensus size: 17
26574045 ATATAAATAT
*
26574055 TTTAATTATATATATTAA
1 TTTAATTAT-TAAATTAA
* *
26574073 TCTATTTTATT-AATTAA
1 TTTA-ATTATTAAATTAA
26574090 TTTAATTATTAAATTAA
1 TTTAATTATTAAATTAA
26574107 -TTAATTA
1 TTTAATTA
26574114 ATGTTATAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
16 12 0.35
17 14 0.41
18 4 0.12
19 4 0.12
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTAATTATTAAATTAA
Found at i:26574868 original size:181 final size:179
Alignment explanation
Indices: 26574489--26574868 Score: 460
Period size: 179 Copynumber: 2.1 Consensus size: 179
26574479 AATCATTTAA
* * *
26574489 TCATAACAATTTTAAATAGATAATTGTTCAAATAATCATAACTATTTGAACTGTTTAACAAACAG
1 TCATAACGATTTTAAATAGATAATTGTTCAAATAATCATAACTATTTGAACTGTTCAACAAACAA
* * ** *
26574554 ATTTATTTTTTCAAATTTCTTACTTATTAATTTTTAGAATGTTAATAAATCAGTATTTTTATTTT
66 ATTAACTTTTTCAAATCACTTACTTATTAATTTTTAGAATATTAATAAATCAGTATTTTTATTTT
** * *
26574619 GAATAATTTTGCATAAACAGAAAGAATTGTTTTATGAAAAAACAAAAAG
131 GAATAAGCTTGCATAAACAGAAACAATTATTTTATGAAAAAACAAAAAG
* * * * * *
26574668 TCATAACGATTTAAAATAGATAATTGTTCAAATAGA-CATGACTATTTGAATTGATTCGATAAAG
1 TCATAACGATTTTAAATAGATAATTGTTCAAATA-ATCATAACTATTTGAACTG-TTCAACAAAC
* * * *
26574732 AAATTAACTTTTT-AAATCACTTAGTTATTAATTTTTGGAATATTAATAAATTAGTTTTATTTTA
64 AAATTAACTTTTTCAAATCACTTACTTATTAATTTTTAGAATATTAATAAATCAG-TAT-TTTTA
* * * *
26574796 TTTTGAATAAGCTTGTATGAACTA-AAACAATTATTTTATGACAAAACAAAATG
127 TTTTGAATAAGCTTGCATAAAC-AGAAACAATTATTTTATGAAAAAACAAAAAG
26574849 TCATAACGATTTTAAATAGA
1 TCATAACGATTTTAAATAGA
26574869 CATTAAAATA
Statistics
Matches: 169, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
179 82 0.49
180 19 0.11
181 67 0.40
182 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (179 bp):
TCATAACGATTTTAAATAGATAATTGTTCAAATAATCATAACTATTTGAACTGTTCAACAAACAA
ATTAACTTTTTCAAATCACTTACTTATTAATTTTTAGAATATTAATAAATCAGTATTTTTATTTT
GAATAAGCTTGCATAAACAGAAACAATTATTTTATGAAAAAACAAAAAG
Found at i:26578601 original size:122 final size:122
Alignment explanation
Indices: 26578417--26578643 Score: 316
Period size: 122 Copynumber: 1.9 Consensus size: 122
26578407 AGCCAATAAG
* ** *
26578417 TATGAAACACACGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTG
1 TATGAAACACACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATTG
*
26578482 TTCAAAACCAAAGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTAACTTAACAC
66 TTCAAAA-CAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTAACTTAACAC
* *
26578540 TATGAAA-ACAACAAAAAATTAAAATCACGC-AAAATTGTTCGAAAT-GTTTTTATGCCCAGAAT
1 TATGAAACAC-ACAAAAAATTAAAATCACGCGAAAATTGTGCG-AATGGGTTTTATGCCCAGAAT
* * *
26578602 TGTTCGAAACAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
64 TGTTCAAAACAAAGTCTGATATTTTAAACTTCAAAATCCTTT
26578644 CTAGGTTACG
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
121 30 0.33
122 35 0.38
123 27 0.29
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.31
Consensus pattern (122 bp):
TATGAAACACACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATTG
TTCAAAACAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTAACTTAACAC
Found at i:26580468 original size:126 final size:126
Alignment explanation
Indices: 26580223--26580469 Score: 309
Period size: 126 Copynumber: 2.0 Consensus size: 126
26580213 AACACAGCGT
** *
26580223 AAAAATTAAAATCGTGCGATAATTGTGCGAATGAGTTTTATGCCCAGAATTGTTCAAAACCAAAG
1 AAAAATTAAAATCACGCGAAAATTGTGCGAATGAGTTTTATGCCCAGAATTGTTCAAAACCAAAG
* * *
26580288 TCTGATGTTTTTAAACTTCAAAATCCTTTATAACTTACACTTGACACTATGAAAAACAACA
66 TCTGATGATTTTAAACTTCAAAATCCTTTATAACTTACACTTAAAACTATGAAAAACAACA
* ** *
26580349 AAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGAATA-CAAA
1 AAAAATTAAAATCACGCGAAAATTGTGCGAATGAGTTTTATGCCCAGAATTGTTC-AAAACCAAA
* * * ** * *
26580413 GTCTGAT-ATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAA
65 GTCTGATGATTTTAAACTTCAAAATCCTTTATAACTTACACTTAAAACTAT-GAAAAA
26580470 TTGAAAAACC
Statistics
Matches: 102, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
125 33 0.32
126 66 0.65
127 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (126 bp):
AAAAATTAAAATCACGCGAAAATTGTGCGAATGAGTTTTATGCCCAGAATTGTTCAAAACCAAAG
TCTGATGATTTTAAACTTCAAAATCCTTTATAACTTACACTTAAAACTATGAAAAACAACA
Found at i:26581065 original size:127 final size:126
Alignment explanation
Indices: 26580805--26581066 Score: 285
Period size: 126 Copynumber: 2.1 Consensus size: 126
26580795 AGCCAATAAG
* * * ** * *
26580805 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGAGTTTTATGCCCATAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGAGTTTTATGCCCAGAATT
* * *
26580870 GTTCAAAACCAAAGTCTGATGTTTTTAAACTGCAAAATCCTTTATAACTTACACTTGACAC
66 GTTCAAAACCAAAGTCTGATGATTTTAAACTGCAAAATCCTTTATAACTTACACTTAAAAC
* **
26580931 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTAGTTCGAATGTTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATT-GTGCGAATGAGTTTTATGCCCAGAAT
* * * * * ** *
26580996 TGTTCGAATA-CAAAGTCTGAT-ATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAAC
65 TGTTC-AAAACCAAAGTCTGATGATTTTAAACTGCAAAATCCTTTATAACTTACACTTAAAAC
*
26581057 TGTGGAAAAA
1 TAT-GAAAAA
26581067 TTAAAAACCA
Statistics
Matches: 111, Mismatches: 22, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
126 64 0.58
127 44 0.40
128 3 0.03
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.31
Consensus pattern (126 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGAGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATGATTTTAAACTGCAAAATCCTTTATAACTTACACTTAAAAC
Found at i:26583425 original size:125 final size:125
Alignment explanation
Indices: 26583200--26583431 Score: 297
Period size: 125 Copynumber: 1.9 Consensus size: 125
26583190 AGCCAATAAG
* * * ** * *
26583200 TATGAAACACAGCGAAAAATGAAAATCGTGCGATAATTGTGCGAATGAGTTTTATGCCCATAATT
1 TATGAAAAACAACAAAAAATGAAAATCACGCGAAAATTGTGCGAATGAGTTTTATGCCCAGAATT
*
26583265 GTTCAAAACCAAAGTCTGATGTTTTAAACTGCAAAATCCTTTATAACTTACACTTGACAC
66 GTTCAAAACCAAAGTCTGATATTTTAAACTGCAAAATCCTTTATAACTTACACTTGACAC
* * *
26583325 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAAT-ATTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATGAAAATCACGCGAAAATTGTGCGAATGA-GTTTTATGCCCAGAAT
* * * *
26583389 TGTTC-GAACACAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
65 TGTTCAAAAC-CAAAGTCTGATATTTTAAACTGCAAAATCCTTT
26583432 CTAGGTTACG
Statistics
Matches: 90, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
124 4 0.04
125 86 0.96
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATGAAAATCACGCGAAAATTGTGCGAATGAGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTTTAAACTGCAAAATCCTTTATAACTTACACTTGACAC
Found at i:26584612 original size:125 final size:123
Alignment explanation
Indices: 26584391--26584621 Score: 293
Period size: 125 Copynumber: 1.9 Consensus size: 123
26584381 AGCCAATAAG
* * * ** *
26584391 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTTATGCCCAGAATTG
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGTTTTATGCCCAGAATTG
* *
26584456 TTCAAAACCAAAGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTGACAC
66 TTCAAAA-CAAAGTCTAATATTTTAAACTTCAAAATCCTTTATAACTTACACTTGACAC
* *
26584515 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATG-GTTTTATGCCCAGAATT
* * * *
26584580 GTTCGAGTAA-AAAGTCTAATATTTTGAGCTTCAAGATCCTTT
65 GTTC-A-AAACAAAGTCTAATATTTTAAACTTCAAAATCCTTT
26584622 CTAGGTTACG
Statistics
Matches: 90, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
124 40 0.44
125 47 0.52
126 1 0.01
127 2 0.02
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (123 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGTTTTATGCCCAGAATTG
TTCAAAACAAAGTCTAATATTTTAAACTTCAAAATCCTTTATAACTTACACTTGACAC
Found at i:26585210 original size:125 final size:125
Alignment explanation
Indices: 26584985--26585216 Score: 306
Period size: 125 Copynumber: 1.9 Consensus size: 125
26584975 AGCCAATAAG
* * * ** * *
26584985 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGAGTTTTATGCCCATAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGAGTTTTATGCCCAGAATT
*
26585050 GTTCAAAACCAAAGTCTGATGTTTTAAACTGCAAAATCCTTTATAACTTACACTTGACAC
66 GTTCAAAACCAAAGTCTGATATTTTAAACTGCAAAATCCTTTATAACTTACACTTGACAC
* *
26585110 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAAT-ATTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGA-GTTTTATGCCCAGAAT
* * * *
26585174 TGTTC-GAACACAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
65 TGTTCAAAAC-CAAAGTCTGATATTTTAAACTGCAAAATCCTTT
26585217 CTAGGTTACG
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
124 4 0.04
125 87 0.96
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGAGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTTTAAACTGCAAAATCCTTTATAACTTACACTTGACAC
Found at i:26586938 original size:124 final size:125
Alignment explanation
Indices: 26586769--26586999 Score: 313
Period size: 125 Copynumber: 1.9 Consensus size: 125
26586759 AAGCAATAAG
* * * ** * *
26586769 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATG-GTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATAGTGCGAATGTGTTTTATGCCCAGAATT
*
26586833 GTTC-AAAACCAAAGTCTGATGTTTTAAACTGCAAAATCCTTTATAACTTACACTTGACAC
66 GTTCGAAAA-CAAAGTCTGATATTTTAAACTGCAAAATCCTTTATAACTTACACTTGACAC
* *
26586893 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATAGTTCGAATGTTTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATAGTGCGAATGTGTTTTATGCCCAGAATT
* * * *
26586958 GTTCGAATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
66 GTTCGAAAACAAAGTCTGATATTTTAAACTGCAAAATCCTTT
26587000 CTAGGTTACG
Statistics
Matches: 91, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
124 39 0.43
125 49 0.54
126 3 0.03
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATAGTGCGAATGTGTTTTATGCCCAGAATT
GTTCGAAAACAAAGTCTGATATTTTAAACTGCAAAATCCTTTATAACTTACACTTGACAC
Found at i:26587584 original size:125 final size:124
Alignment explanation
Indices: 26587363--26587593 Score: 320
Period size: 125 Copynumber: 1.9 Consensus size: 124
26587353 AGCCAATAAG
* * * *** *
26587363 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGTTTTATGCCCAGAATTG
1 TATGAAAAACAACAAAAAATTAAAATCACACGAAAATTGTGCGAATGGTTTTATGCCCAGAATTG
*
26587428 TTCAAAACCAAAGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTGACAC
66 TTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTGACAC
* *
26587487 TATGAAAAACAACAAAAAATTAAAATCACACGAAAATTGTTCGAATGTTTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACACGAAAATTGTGCGAATG-GTTTTATGCCCAGAATT
* * *
26587552 GTTCGAATA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
65 GTTC-AAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTT
26587594 CTAGGTTACG
Statistics
Matches: 92, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
124 39 0.42
125 50 0.54
126 3 0.03
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (124 bp):
TATGAAAAACAACAAAAAATTAAAATCACACGAAAATTGTGCGAATGGTTTTATGCCCAGAATTG
TTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTGACAC
Found at i:26588180 original size:125 final size:125
Alignment explanation
Indices: 26587958--26588189 Score: 331
Period size: 125 Copynumber: 1.9 Consensus size: 125
26587948 AGCCAATAAG
* * * ** *
26587958 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
*
26588023 GTTCAAAACCAAAGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTGACAC
66 GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTGACAC
* **
26588083 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
* * *
26588148 GTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
66 GTTC-AAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTT
26588190 CTAGGTTACG
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
125 90 0.97
126 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTGACAC
Found at i:26588801 original size:125 final size:125
Alignment explanation
Indices: 26588555--26588786 Score: 331
Period size: 125 Copynumber: 1.9 Consensus size: 125
26588545 AGCAAATAAG
* * * ** *
26588555 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
*
26588620 GTTCAAAACCAAAGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
* **
26588680 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
* * *
26588745 GTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
66 GTTC-AAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTT
26588787 CTAGGTTACG
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
125 90 0.97
126 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
Found at i:26589379 original size:125 final size:125
Alignment explanation
Indices: 26589157--26589388 Score: 340
Period size: 125 Copynumber: 1.9 Consensus size: 125
26589147 AGCCAATAAG
* * ** *
26589157 TATGAAACACAACGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
*
26589222 GTTCAAAACCAAAGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTGACAC
66 GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTGACAC
* **
26589282 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
* * *
26589347 GTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
66 GTTC-AAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTT
26589389 CTAGGTTACG
Statistics
Matches: 94, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
125 91 0.97
126 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTGACAC
Found at i:26589999 original size:125 final size:125
Alignment explanation
Indices: 26589753--26589984 Score: 331
Period size: 125 Copynumber: 1.9 Consensus size: 125
26589743 AGCCAATAAG
* * * ** *
26589753 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
*
26589818 GTTCAAAACCAAAGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
* **
26589878 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
* * *
26589943 GTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
66 GTTC-AAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTT
26589985 CTAGGTTACG
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
125 90 0.97
126 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
Found at i:26590599 original size:125 final size:125
Alignment explanation
Indices: 26590353--26590584 Score: 315
Period size: 125 Copynumber: 1.9 Consensus size: 125
26590343 AGCAAATAAG
* * * ** *
26590353 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
*
26590418 GTTCAAAACCAAAGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
* **
26590478 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTTC-AATGTTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTG-TGCGAATGGGTTTTATGCCCAGAAT
* * *
26590542 TGTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
65 TGTTC-AAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTT
26590585 CTAGGTTACG
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
125 87 0.95
126 5 0.05
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
Found at i:26591202 original size:125 final size:125
Alignment explanation
Indices: 26590956--26591187 Score: 324
Period size: 125 Copynumber: 1.9 Consensus size: 125
26590946 AGCCAATAAG
* * ** *
26590956 TATGAAACACAACGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
*
26591021 GTTCAAAACCAAAGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
* **
26591081 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTTC-AATGTTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTG-TGCGAATGGGTTTTATGCCCAGAAT
* * *
26591145 TGTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
65 TGTTC-AAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTT
26591188 CTAGGTTACG
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
125 88 0.95
126 5 0.05
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
Found at i:26591805 original size:125 final size:125
Alignment explanation
Indices: 26591559--26591790 Score: 315
Period size: 125 Copynumber: 1.9 Consensus size: 125
26591549 AGCAAATAAG
* * * * *
26591559 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
*
26591624 GTTCAAAACCAAAGTCTGATGTTGTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
* **
26591684 TATGAAAAACAACAAAAAATTAAAATCACT-CGAAAATTGTTCGAATGTTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATC-CTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAAT
* * * *
26591748 TGTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
65 TGTTC-AAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTT
26591791 CTAGGTTACG
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
125 88 0.96
126 4 0.04
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
Found at i:26592386 original size:125 final size:125
Alignment explanation
Indices: 26592164--26592395 Score: 315
Period size: 125 Copynumber: 1.9 Consensus size: 125
26592154 AGCAAATAAG
* * * ** *
26592164 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
*
26592229 GTTCAAAACCAAAGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
* **
26592289 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTTC-AATGTTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTG-TGCGAATGGGTTTTATGCCCAGAAT
* * *
26592353 TGTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
65 TGTTC-AAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTT
26592396 CTAGGTTAAG
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
125 87 0.95
126 5 0.05
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
Found at i:26593006 original size:125 final size:125
Alignment explanation
Indices: 26592760--26592991 Score: 333
Period size: 125 Copynumber: 1.9 Consensus size: 125
26592750 AGCCAATAAG
* * * *
26592760 TATGAAACACAACGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
*
26592825 GTTCAAAACCAAAGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
* **
26592885 TATGAAAAACAACAAAAAATTAAAATCACT-CGAAAATTGTTCGAATGTTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATC-CTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAAT
* * *
26592949 TGTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
65 TGTTC-AAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTT
26592992 CTAGGTTACG
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
125 90 0.96
126 4 0.04
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
Found at i:26593593 original size:606 final size:603
Alignment explanation
Indices: 26577528--26603581 Score: 40536
Period size: 606 Copynumber: 43.4 Consensus size: 603
26577518 NNNNNNNTTG
* * *
26577528 TTGAGCAGGTTT-AAACATTCGATTTAATATATTC-AATTCCATTTCCTTTTAAAAAACCTTCTA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATT-CATTTCC-ATTAAAAAACCTGCTA
* * * * *
26577591 AAACAATTCTTTCGTA-TTTAAAGCTGGACT-AAGAG-AAATCA-TATCGAA-G-AAACATAAAA
64 AAACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAA
** ** * * * *
26577650 TTTCAAAAGCATTAGGCTTTTAG-GCTCCTTCTAT-AACTGCTAAAACAAAGTTAGCAGACAACT
129 TTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAAC-AATTTAGCACATAATT
* ** * *
26577713 AATCACGTCAAGCACCAATAACAACTTCACAAATAATATCCAAATATC-AAGATCA-TCA-ATGT
193 AATCACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGT
* * *
26577775 AAT-CTCACAAGTTCCTTAGAGCACCTAAAAATGTATCTCAAAGCCAATAAGTATGAAACACA-C
257 AATCCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGC
*
26577838 GAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTTTGCCCAGAATTGTTCAAAACCAAA
320 GAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAA
*
26577903 GTCTGATGTTGTAAACTTCAAAATCCTTTATAACTTACAC-TAACACTATGAAAAACAACAAAAA
385 GTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAA
* *
26577967 ATTAAAATCACACGAGAAAATTGTTTC-AATGTTTTTTATG-CCAGAATTGTTCGGAAAAAAAGT
450 ATTAAAAT--CACGCGAAAATTG-TTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGT
* *
26578030 CTGAATATTTTGAGC-TC-AAATCCATTCTAGGTTACGCTTAAAACTGTGGGAAAATTAAAAACC
512 CTG-ATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACC
*
26578093 AATGATAGTTTTACC-TTGTTTCATTGT
576 AACGATAGTTTTACCTTTGTTTCATTGT
* * *
26578120 TTGAGCAGGTTTAAAACATTCGATTCAATATATATCAAATTCATTTGCATTTAAAAACCTTCTAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATAT-TCAAATTCATTTCCATTAAAAAACCTGCTAA
* ** *
26578185 AACAATTCTTTCATATTTTAAAGCTGGACTATAGAGAAAATCA-TTTCGAA--AAAACATAAAAT
65 AACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAAT
* ** * *
26578247 TTCAAAAGCATTA-GCTT-TAGTGCTCCTTCTATAAACTGCT-AAACAAGTTAGCAGATAACTTA
130 TTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAA-TTA
** * ** * *
26578309 ATCACGGTCA--AATAATAACAACTTC--AAATAATATCCAAATATC-AAGATCATTCAAATGT-
194 ATCACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGTA
* * *
26578368 AT--TCACAAGTCCTTAGAGCAACCTAAAAATGTATCTCAAAGCCAATAAGTATGAAACACA-CG
258 ATCCTCA-AAATCCTTAGAGC-ACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCG
26578430 AAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAG
321 AAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAG
26578495 TCTGATGTTTTAAACTTCAAAATCCTTTATAACTTA-ACTTAACACTATG-AAAACAACAAAAAA
386 TCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAA
26578558 TTAAAATCACGC-AAAATTGTTCGAAATG-TTTTTATGCCCAGAATTGTTC-GAAACAAAGTCTG
451 TTAAAATCACGCGAAAATTGTTCG-AATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTG
26578620 ATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGC-T-AAACTGTGGAAAAATTAAAAA-CAACC
515 ATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAA-C
* *
26578682 CACAGATTTTA-C-TTGTTTCATTGT
579 GATAG-TTTTACCTTTGTTTCATTGT
26578706 TTGAGCAGGGTTTAAAACATTCGA-TCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAA
1 TTGAGCA-GGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAA
* *
26578770 AACAATGC-TTCATATTTTAAAAGCTTGACTCCAGTGAAAATCA-TTTCAAAGGAAAACATAAAA
65 AACAATGCTTTCATATTTT-AAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAA
26578833 TTTCAAAAGCATTAGGCTTCGAGTGCT-CCCCTATAAACTGCTAAAACAATTTAGCACATAATT-
129 TTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTA
26578896 ATCACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA
194 ATCACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA
26578961 TCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAA
259 TCCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAA
26579026 AATTAAAATCGTGCGATAATTGTGCGAAT-GGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCT
324 AATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCT
26579090 GATG-TTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTA
389 GATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTA
*
26579154 AAATCACTCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATAT
454 AAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATAT
* * *
26579219 TTTGAGCTTCAAAATCCTTTCTATGTTACGCTTAAAACTGTGGAAAAATTAAAAAGCAACGCTAG
519 TTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAG
26579284 TTTTACC-TTGTTTCATTGT
584 TTTTACCTTTGTTTCATTGT
26579303 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* *
26579368 ACAACGCTTTCATATTTTAAAGCT-GACTCCAGTGAAAATCA-TTTCAAA-GAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
26579430 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATT-AT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
*
26579494 CACATTGAGCACCAATAACAACTTCAGAAATAATATCCTAATACGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
26579559 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
26579624 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAAACCAAAGTCT
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTC-AAAACCAAAGTCT
*
26579689 GATGTTTTAAACTTC-AAAT-CTTTATAACTTACACTTGACACTATGAAAAACAAC-AAAAA-TA
389 GATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTA
26579750 AAATCACGCGAAAATTGTTCGAA-GTTTTTTATGCCCAGAATTGTTGCGGAAACAAAGTCTGATA
454 AAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTT-CGGAAACAAAGTCTGATA
26579814 TTTTGAGCTTCAAAATCCTTTCTA-GTTACGCTTAAAAACTGTGGAAAAAATTAAAAACC-A--A
518 TTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTT-AAAACTGTGG-AAAAATTAAAAACCAACGA
*
26579875 T-G--CTA--TTTGTTTCATTG-
581 TAGTTTTACCTTTGTTTCATTGT
* *
26579892 TTGAGCAGGTTTAAAACATTCGATTCAATATATTTCAAATTCATTTCCATTTAAAAACCTTCTTA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATA-TTCAAATTCATTTCCATTAAAAAACCTGC-TA
* * ** * * *
26579957 AAACAATTCTTTCATATTTTAAAACTGGACTTATTAGAGAAAATAATATTCGAAAGAAAAAACAT
64 AAACAATGCTTTCATATTTTAAAGCTGGAC-T-CCAGAGAAAATCATTTTC-AAAG-GAAAACA-
* ** ** *
26580022 TAAAATTTCAAAAAGCGTTTAGGCTTTTAGTGGCTCCTTCTATAAACTGCTAAAACAAGTT-GCA
124 TAAAATTTC-AAAAGC-ATTAGGCTTCGAGT-GCTCCCCCTATAAACTGCTAAAACAATTTAGCA
* * * * * * * * *
26580086 GACAGCTAAATCACA-TCAGCGCGAATAACAACTTCACAAATAATATCCAAAATATC-AAGATCA
186 CATA-ATTAATCACATTGAGCACCAATAACAACTTCATAAATAATATCC-TAATA-CGAAGATCA
* * *
26580149 TTCAAATGTAAT-CTCACAAGTTCCTTAGAGCACCT-AAAATGTATCTAAAAGCCAATAAGTATG
248 TTCATATGTAATCCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATG
*
26580212 AAACACAGCGTAAAAATTAAAATCGTGCGATAATTGTGCGAATGAGTTTTATGCCCAGAATTGTT
311 AAACACAGCG-AAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTT
*
26580277 CAAAACCAAAGTCTGATGTTTTTAAACTTCAAAATCCTTTATAACTTACACTTGACACTATGAAA
375 CAAAACCAAAGTCTGATG-TTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAA
26580342 AACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTC-GA
439 AACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGA
26580406 ATACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAAT
504 A-ACAAAGTCTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAAT
*
26580471 TGAAAAACC-A--AT-G--CTA--TTTGTTTCATTGT
568 T-AAAAACCAACGATAGTTTTACCTTTGTTTCATTGT
* * *
26580500 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTTCATT-TAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* ** * * *
26580564 ACAATTCTTTCATATTTTAAAGCTGGACTATAGAG-AAATCATATTCGAAGAAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
** ** * * * **
26580628 TCAAAAGCATTAGGCTTTTAGTGCTCCTTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAAT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
* * * * * *
26580693 CAC-TTCAAGCGCGAATAACAACTTCACAAATAATATCCAAATATC-AAGATCATTCAAATGTAA
196 CACATT-GAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGTAA
* * *
26580756 T-CTCACAAGTTCCTTAGAGCACCTAAAAGTGTATCTAAAAGCCAATAAGTATGAAACACAGCGA
259 TCCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGA
* *
26580820 AAAATTAAAATCGTGCGATAATTGTGCGAATGAGTTTTATGCCCATAATTGTTCAAAACCAAAGT
322 AAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGT
* *
26580885 CTGATGTTTTTAAACTGCAAAATCCTTTATAACTTACACTTGACACTATGAAAAACAACAAAAAA
387 CTGATG-TTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAA
26580950 TTAAAATCACGCGAAAATTAGTTCGAATGTTTTTTATGCCCAGAATTGTTC-GAATACAAAGTCT
451 TTAAAATCACGCGAAAATT-GTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAA-ACAAAGTCT
26581014 GATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACC-A-
514 GATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAAC
*
26581077 -AT-G--CTA--TTTGTTTCATTGT
579 GATAGTTTTACCTTTGTTTCATTGT
* ** * *
26581096 TTGAGCAGGTTTAAAACATTCGATTCAATACATTCAAATTCATTTTAATTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* ** * * *
26581161 ACAATTCTTTCATATTTTAAAGCTGGACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
** ** * * * *
26581226 TCAAAAGCATTAGGCTTTTAGTGCTCCTTCTATAAACTGCTAAAACAAGTTAGCAGACAACTAAT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
* ** * * *
26581291 CACGTCAAGCACCAATAACAACTTCACAAATAATATCCAAATATC-AAGATCATTCAAATGTAAT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGTAAT
* * *
26581355 -CTCACAAGTTCCTTAGAGCACCTAAAAATGTATCTCAAAGCCAATAAGTATG-AACACAGCGAA
260 CCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAA
26581418 AAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
323 AAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
26581483 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATT
388 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATT
26581548 AAAATCACGCGAAAATTGTTTC-AATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGAT
453 AAAATCACGCGAAAATTG-TTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGAT
26581612 ATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAATC-A
517 ATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAA-CGA
*
26581676 TAG-TTTA-CGTTGTTTCATTGT
581 TAGTTTTACCTTTGTTTCATTGT
* * *
26581697 TTGAGCAGGTTTAAAACATTCGATTTAATATATTCAAATTCATTTCCATTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* ** * * *
26581762 ACAATTCTTTCATATTTTAAAGCTGGACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
** ** * * * * *
26581827 TCAAAAGCATTAGGCTTTTAGTGCTCCTTCTATAAACTGCTAAAACAAGTTACCAGACAACTAAT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
* ** * * *
26581892 CACGTCAAGCACCAATAACAACTTCACAAATAATATCCAAATATC-AAGATCATTCAAATGTAAT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGTAAT
* *
26581956 -CTCACAAGTTCCTTAGAGCACCTAAAAATGTATCTAAAAGCCAATAAGTATGAAACACAG-GAA
260 CCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAA
26582019 AAATTAAAATCGTGCGATAATTGTGCGAAT-GGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
323 AAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
*
26582083 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTGACACTATGAAAAACAACAAAAAATT
388 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATT
* *
26582148 AAAATCACGCGAAAATTGTTTCGAATGTTTTTTATGCCCAGAATTGTTCGAGTAA-AAAGTCTAA
453 AAAATCACGCGAAAATTG-TTCGAATGTTTTTTATGCCCAGAATTGTTCG-GAAACAAAGTCTGA
* * *
26582212 TATTTTGAGCTTCAAGATCCTTTCTAGGTTACGCTTAAAACTGTGTAAAAATTGAAAACC-A--A
516 TATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGA
*
26582274 T-G--CTA--TTTGTTTCATTGT
581 TAGTTTTACCTTTGTTTCATTGT
* * *
26582292 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCT-AA
* ** * * *
26582357 AACAATTCTTTCATATTTTAAAGCTGGACTATAGAGAAAATCATATTCGAAGAAAAACATAAAAT
65 AACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAAT
** *** * * * **
26582422 TTCAAAAGCATTAGGCTTTTAGTGCTCGTTCTATAAAACTGCTAAAACAAGTTAGCAGACAGCTA
130 TTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTAT-AAACTGCTAAAACAATTTAGCACATAATTA
* * * * ** *
26582487 ATCAC-TTCAAGCGCGAATAACAACTTCACAAATAATATCAAAATATC-AAGATCATTCAAATGT
194 ATCACATT-GAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGT
* * *
26582550 AAT-CTCACAAGTTCCTTAGAGCACCTAAAAGTGTATCTAAAAGCCAATAAGTATGAAACACAGC
257 AATCCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGC
* *
26582614 GAAAAATTAAAATCGTGCGATAATTGTGCGAATGAGTTTTATGCCCATAATTGTTCAAAACCAAA
320 GAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAA
* *
26582679 GTCTGATGTTTTTAAACTTCAAAATCCTTTATAACTTACACTTGACACTATGAAAAACAGCAAAA
385 GTCTGATG-TTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAA
* *
26582744 AATTAAAATCACACGAAAATTGTTTCGAATG-TTTTTATGCCCAGAATTGTTCGAGTAA-AAAGT
449 AATTAAAATCACGCGAAAATTG-TTCGAATGTTTTTTATGCCCAGAATTGTTCG-GAAACAAAGT
* * *
26582807 CTAATATTTTGAGCTTCAAGATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTGAAAACC-
512 CTGATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCA
* *
26582871 A--AT-G--CTA-TTTTGTTTCATTGT
577 ACGATAGTTTTACCTTTGTTTCATTGT
* * *
26582892 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* ** * * * *
26582957 ACAATTCTTTCATATTTTAAAGCTGGACTGTAGAGAAAATGATATTCGAAGAAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
** ** * * * **
26583022 TCAAAAGCATTAGGCTTTTAGTGCTCCTTCTATAAAACTGCTAAAACAAGTTAGCAGACAGCTAA
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTAT-AAACTGCTAAAACAATTTAGCACATAATTAA
* * * * * *
26583087 TCAC-TTCAAGCGCGAATAACAACTTCACAAATAATATCCAAATATC-AAGATCATTCAAATGTA
195 TCACATT-GAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGTA
* *
26583150 AT-CTCACAAGTTCCTTAGAGCACCTAAAAATGTATCTAAAAGCCAATAAGTATGAAACACAGCG
258 ATCCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCG
* * *
26583214 AAAAATGAAAATCGTGCGATAATTGTGCGAATGAGTTTTATGCCCATAATTGTTCAAAACCAAAG
321 AAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAG
* *
26583279 TCTGATGTTTTAAACTGCAAAATCCTTTATAACTTACACTTGACACTATGAAAAACAACAAAAAA
386 TCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAA
*
26583344 TTAAAATCACGCGAAAATTGTTCGAATATTTTTTATGCCCAGAATTGTTC-GAACACAAAGTCTG
451 TTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAA-ACAAAGTCTG
*
26583408 ATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAGAACTGTGGAAAAATTAAAAACC-A--
515 ATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACG
*
26583470 AT-G--CTA--TTTGTTTCATTGT
580 ATAGTTTTACCTTTGTTTCATTGT
* ** * *
26583489 TTGAGCAGGTTTAAAACATTCGATTCAATACATTCAAATTCATTTTAATTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* * ** * * *
26583554 ACAATTCTTTCATATTTTAAAACTGGACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
** *** * * * **
26583619 TCAAAAGCATTAGGCTTTTAGTGCTCGTTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAAT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
* * * * ** *
26583684 CAC-TTCAAGCGCGAATAACAACTTCACAAATAATATCAAAATATC-AAGATCATTCAAATGTAA
196 CACATT-GAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGTAA
* * *
26583747 T-CTCACAAGTTCCTTAGAGCACCTAAAAGTGTATCTAAAAGCCAATAAGTATGAAACACAGCGA
259 TCCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGA
* *
26583811 AAAATTAAAATCGTGCGATAATTGTGCGAATGAGTTTTATGCCCATAATTGTTCAAAACCAAAGT
322 AAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGT
* *
26583876 CTGATGTTTTAAACTGCAAAATCCTTTATAACTTACACTTGACACTATGAAAAACAACAAAAAAA
387 CTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAAC-AAAAAA
* *
26583941 TTAAAATCACGCGAAAATAGTTCGAATGTTTTTTATGCCCAGAATTGTTC-AAATACAAAGTCTG
451 TTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAA-ACAAAGTCTG
26584005 ATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACC-A--
515 ATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACG
*
26584067 AT-G--CTA--TTTGTTTCATTGT
580 ATAGTTTTACCTTTGTTTCATTGT
* *
26584086 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTT-CATTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* ** * * *
26584150 ACAATTCTTTCATATTTTAAAGCTGGACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
** ** * * * **
26584215 TCAAAAGCATTAGGCTTTTAGTGCTCCTTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAAT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
** * * * *
26584280 CACATCAAGCGCCAATAACAACTTCACAAATAATATCCAAATATC-AAGATCATTCAAATGTAAT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGTAAT
* *
26584344 -CTCACAAGTTCCTTAGAGCACCT-AAAATGTATCTAAAAGCCAATAAGTATGAAACACAGCGAA
260 CCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAA
26584407 AAATTAAAATCGTGCGATAATTGTGCGAAT-GGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
323 AAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
*
26584471 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTGACACTATGAAAAACAACAAAAAATT
388 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATT
* *
26584536 AAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGAGTAA-AAAGTCTAAT
453 AAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCG-GAAACAAAGTCTGAT
* * *
26584600 ATTTTGAGCTTCAAGATCCTTTCTAGGTTACGCTTAAAACTGTGTAAAAATTGAAAACC-A--AT
517 ATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGAT
*
26584662 -G--CTA--TTTGTTTCATTGT
582 AGTTTTACCTTTGTTTCATTGT
* * *
26584679 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* * ** * * *
26584744 ACAATTCTTTCATATTTAAAAGCTGGACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
** *** * * * **
26584809 TCAAAAGCATTAGGCTTTTAGTGCTCGTTCTATAAAACTGCT-AAACAAGTTAGCAGACAGCTAA
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTAT-AAACTGCTAAAACAATTTAGCACATAATTAA
* * * * * ** *
26584873 TCAC-TTCAACGCGAATAACAACTTCACAAATAATATCAAAATATC-AAGATCATTCAAATGTAA
195 TCACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGTAA
* *
26584936 T-CTCACAAGTTCCTTAGAGCACCTAAAAATGTATCTAAAAGCCAATAAGTATGAAACACAGCGA
259 TCCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGA
* *
26585000 AAAATTAAAATCGTGCGATAATTGTGCGAATGAGTTTTATGCCCATAATTGTTCAAAACCAAAGT
322 AAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGT
* *
26585065 CTGATGTTTTAAACTGCAAAATCCTTTATAACTTACACTTGACACTATGAAAAACAACAAAAAAT
387 CTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAAT
*
26585130 TAAAATCACGCGAAAATTGTTCGAATATTTTTTATGCCCAGAATTGTTC-GAACACAAAGTCTGA
452 TAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAA-ACAAAGTCTGA
26585194 TATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACC-A--A
516 TATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGA
*
26585256 T-G--CTA--TTTGTTTCATTGT
581 TAGTTTTACCTTTGTTTCATTGT
* *
26585274 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* ** * * *
26585339 ACAATTCTTTCATATTTTAAAGCTGGACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
** ** * * * **
26585404 TCAAAAGCATTAGGCTTTTAGTGCTCCTTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAAT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
* * * * * * ** *
26585469 CAC-TTCAAGCGCGAATAATAACTTTACAAATAATATCAAAATATC-AAGATCATTCAAATGTAA
196 CACATT-GAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGTAA
* *
26585532 T-CTCACAAGTTCCTTAGAGCACCTAAAAATGTATCTAAAAGCCAATAAGTATGAAACACAGCGA
259 TCCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGA
* * *
26585596 AAAATGAAAATCGTGCGATAATTGTGCGAATGAGTTTTATGCCCATAATTGTTCAAAACCAAAGT
322 AAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGT
* *
26585661 CTGATGTTTTAAACTGCAAAATCCTTTATAACTTACACTTGACACTATGAAAAACAACAAAAAAA
387 CTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAAC-AAAAAA
* * *
26585726 TTAAAATCACGCGAAAATAGTTCGAATGTTTTTTATGCCCA-AACTGTTC-AAATACAAAGTCTG
451 TTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAA-ACAAAGTCTG
26585789 ATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACC-A--
515 ATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACG
*
26585851 AT-G--CTA--TTTGTTTCATTGT
580 ATAGTTTTACCTTTGTTTCATTGT
* ** * *
26585870 TTGAGCAGGTTTAAAACATTCGATTCAATACATTCAAATTCATTTTAATTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* * ** * * *
26585935 ACAATTCTTTCATATTTTAAAACTGGACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
* ** ** * * * **
26586000 TCAAAAGCGTTAGGCTTTTAGTGCTCCTTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAAT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
** * * * *
26586065 CACATCAAGCGCCAATAACAACTTCACAAATAATATCCAAATATC-AAGATCATTCAAATGTAAT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGTAAT
* * *
26586129 -CTCACAAGTTCCTTAGAGCACCTAAAAATGTATCTAAAAGCCAATAAGTATGAAACGCAGCGAA
260 CCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAA
26586193 AAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
323 AAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
* *
26586258 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTGACACTATGAAAAACAGC-AAAAATT
388 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATT
* *
26586322 AAAATCACACGAAAATTGTTCGAATG-TTTTTATGCCCAGAATTGTTCGAGTAA-AAAGTCTGAT
453 AAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCG-GAAACAAAGTCTGAT
*
26586385 ATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTGAAAACC-A--AT
517 ATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGAT
*
26586447 -G--CTA--TTTGTTTCATTGT
582 AGTTTTACCTTTGTTTCATTGT
* * *
26586464 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* * ** * * *
26586529 ACAATTCTTTCATATTTTAAAACTGGACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
** ** * * * **
26586594 TCAAAAGCATTAGGCTTTTAGTGCTCCTTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAAT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
** * * * *
26586659 CACATCAAGCGCCAATAACAACTTCACAAATAATATCCAAATATC-AAGATCATTCAAATGTAAT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGTAAT
*
26586723 -CTCACAATTCCTTAGAGCACCTAAAAATGTATCTAAAAGC-AATAAGTATGAAACACAGCGAAA
260 CCTCA-AAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAA
26586786 AATTAAAATCGTGCGATAATTGTGCGAAT-GGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCT
324 AATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCT
* *
26586850 GATGTTTTAAACTGCAAAATCCTTTATAACTTACACTTGACACTATGAAAAACAACAAAAAATTA
389 GATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTA
*
26586915 AAATCACGCGAAAATAGTTCGAATGTTTTTTATGCCCAGAATTGTTC-GAATACAAAGTCTGATA
454 AAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAA-ACAAAGTCTGATA
26586979 TTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACC-A--AT-
518 TTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATA
*
26587040 G--CTA--TTTGTTTCATTGT
583 GTTTTACCTTTGTTTCATTGT
* *
26587057 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTT-CATTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* * ** * * *
26587121 ACAATTCTTTCATATTTTAAAACTGGACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
** ** * * * **
26587186 TCAAAAGCATTAGGCTTTTAGTGCTCCTTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAAT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
** * * * *
26587251 CACATCAAGCGCCAATAACAACTTCACAAATAATATCCAAATATC-AAGATCATTCAAATGTAAT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGTAAT
* *
26587315 -CTCACAAGTTCCTTAGAGCACCTAAAAATGTATCTAAAAGCCAATAAGTATGAAACACAGCGAA
260 CCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAA
26587379 AAATTAAAATCGTGCGATAATTGTGCGAAT-GGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
323 AAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
*
26587443 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTGACACTATGAAAAACAACAAAAAATT
388 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATT
*
26587508 AAAATCACACGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTC-GAATACAAAGTCTGAT
453 AAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAA-ACAAAGTCTGAT
26587572 ATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACC-A--AT
517 ATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGAT
*
26587634 -G--CTA--TTTGTTTCATTGT
582 AGTTTTACCTTTGTTTCATTGT
* * *
26587651 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTTCATTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* ** * * *
26587716 ACAATTCTTTCATATTTTAAAGCTGGACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
** ** * * * **
26587781 TCAAAAGCATTAGGCTTTTAGTGCTCCTTCTATAAACTGCTAAAACAAGTTAGCAGACAGCTAAT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
* * * * *
26587846 CAC-TTCAAGCACGAATAACAACTTCACAAATAATATCCAAATATC-AAGATCATTCAAATGTAA
196 CACATT-GAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGTAA
* *
26587909 T-CTCACAAGTTCCTTAGAGCACCTAAAAATGTATCTAAAAGCCAATAAGTATGAAACACAGCGA
259 TCCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGA
26587973 AAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGT
322 AAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGT
*
26588038 CTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTGACACTATGAAAAACAACAAAAAAT
387 CTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAAT
26588103 TAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGAT
452 TAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGAT
26588168 ATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACC-A--AT
517 ATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGAT
* *
26588230 -G--CTA-TTTTGTTTCATTGT
582 AGTTTTACCTTTGTTTCATTGT
* *
26588248 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* ** * *
26588313 ACAATTCTTTCATATTTTAAAGCTGGACTATAGAGAAAATCATATTCGAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
*
26588378 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
26588443 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
*
26588508 CCTCAAAATGCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
26588573 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
26588638 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
26588703 AATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
455 AATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
26588768 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAATC-ATAG
520 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAA-CGATAG
26588832 -TTTACC-TTGTTTCATTGT
584 TTTTACCTTTGTTTCATTGT
* *
26588850 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* ** * * *
26588915 ACAATTCTTTCATATTTTAAAGCTGGACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
** ** * * * *
26588980 TCAAAAGCATTAGGCTTTTAGTGCTCCTTCTATAAACTGCTAAAACAAGTTAGCAGACAACTAAT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
** * * *
26589045 CACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATC-AAGATCATTCAAATGTAAT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGTAAT
* * *
26589109 -CTCACAAGTTCCTTAGAGCACCTAAAAATGTATCTAAAAGCCAATAAGTATGAAACACAACGAA
260 CCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAA
26589173 AAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
323 AAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
*
26589238 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTGACACTATGAAAAACAACAAAAAATT
388 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATT
26589303 AAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATA
453 AAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATA
26589368 TTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACC-A--AT-
518 TTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATA
*
26589429 G--CTA--TTTGTTTCATTGT
583 GTTTTACCTTTGTTTCATTGT
* *
26589446 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* ** * * *
26589511 ACAATTCTTTCATATTTTAAAGCTGGACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
** ** * * * *
26589576 TCAAAAGCATTAGGCTTTTAGTGCTCCTTCTATAAACTGCTAAAACAAGTTAGCAGACAACTAAT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
* * * * * *
26589641 CAC-TTCAAGCACGAATAACGACTTCACAAATAATATCCAAATATC-AAGATCATTCAAATGTAA
196 CACATT-GAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGTAA
* ** *
26589704 TCTTACAAGTTCCTTAGAGCACCTAAAAATGTATCTAAAAGCCAATAAGTATGAAACACAGCGAA
259 TCCT-CAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAA
26589769 AAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
323 AAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
26589834 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATT
388 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATT
26589899 AAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATA
453 AAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATA
*
26589964 TTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAATGATA
518 TTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATA
26590029 G-TTTACC-TTGTTTTCATTGT
583 GTTTTACCTTTG-TTTCATTGT
26590049 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATT-AAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* *
26590113 ACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
*
26590178 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
26590243 CACA-TGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATC
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATC
26590307 CTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAAA
261 CTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAAA
26590372 TTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGA
326 TTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGA
26590437 TGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAAA
391 TGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAAA
26590502 ATCACGCGAAAATTGTTTC-AATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
456 ATCACGCGAAAATTG-TTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
26590566 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAATC-ATAG
520 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAA-CGATAG
26590630 TTTTACC-TTGTTTCATTGT
584 TTTTACCTTTGTTTCATTGT
* * *
26590649 TTGAGCAGGTTTAAAACATTCGATTTAATATATTCAAATTCATTTCCATTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* ** * * *
26590714 ACAATTCTTTCATATTTTAAAGCTGGACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
** ** * * * *
26590779 TCAAAAGCATTAGGCTTTTAGTGCTCCTTCTATAAACTGCTAAAACAAGTTAGCAGACAACTAAT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
** * * *
26590844 CACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATC-AAGATCATTCAAATGTAAT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGTAAT
* * * *
26590908 -CTCACAAGTTCCTTAGAGCACCTAAAAATGTATCTCAAAGCCAATAAGTATGAAACACAACGAA
260 CCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAA
26590972 AAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
323 AAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
26591037 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATT
388 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATT
26591102 AAAATCACGCGAAAATTGTTTC-AATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGAT
453 AAAATCACGCGAAAATTG-TTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGAT
* *
26591166 ATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAATGCT
517 ATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGAT
*
26591231 A--TTTACTTGTTGTTTCATTGT
582 AGTTTTACCT-TTGTTTCATTGT
*
26591252 TTGAGCAGGTTTGAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* * ** *
26591317 ACATTGATTTCATATTTTAAAGCTTTACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
*
26591382 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
26591447 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
*
26591512 CCTCAAAATGCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
26591577 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
*
26591642 ATGTTGTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
*
26591707 AATCACTCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
455 AATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
26591772 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
520 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
26591837 TTTACC-TTGTTGTTCATTGT
585 TTTACCTTTG-T-TTCATTGT
26591857 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* * * *
26591922 ACAATGCTTTCATATTTTAAAGGTTGACTCCAGTGAAAATCATTTTCAAAAGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
* *
26591987 TCAAAAGCATTAGGCTTCGAGTGCTCCTCCTATAAACTGCTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
*
26592052 CACATTAAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
*
26592117 CCTCAAAATGCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
26592182 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
26592247 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
26592312 AATCACGCGAAAATTGTTTC-AATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATAT
455 AATCACGCGAAAATTG-TTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATAT
*
26592376 TTTGAGCTTCAAAATCCTTTCTAGGTTAAGCTTAAAACTGTGG-------AAAAACCAATC-ATA
519 TTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAA-CGATA
26592433 GTTTTACC-TTGTTTCATTGT
583 GTTTTACCTTTGTTTCATTGT
* * *
26592453 TTGAGCAGGTTTAAAACATTCGATTTAATATATTCAAATTCATTTCCATTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* ** * * *
26592518 ACAATTCTTTCATATTTTAAAGCTGGACTATAGAGAAAATCATATTCGAAGAAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
** ** * * * * *
26592583 TCAAAAGCATTAGGCTTTTAGTGCTCCTTCTATAAACTGCTAAAACAAGTTACCAGACAACTAAT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
* ** * * * *
26592648 CACGTCAAGCACCAATAGCAACTTCACAAATAATATCCAAATATC-AAGATCATTCAAATGTAAT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATGTAAT
* * * *
26592712 -CTCACAAGTTCCTTAGAGCACCTAAAAATGTATCTCAAAGCCAATAAGTATGAAACACAACGAA
260 CCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAA
26592776 AAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
323 AAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTC
26592841 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATT
388 TGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATT
*
26592906 AAAATCACTCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATA
453 AAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATA
26592971 TTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATA
518 TTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATA
26593036 GTTTTACCTTGTTGTTTCATTGT
583 GTTTTACC-T-TTGTTTCATTGT
26593059 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* * *
26593124 ACAATGCTTTCATATTTTAAAGGTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
*
26593189 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
26593254 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
26593319 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
*
26593384 ATTAAAATCGTGCGATAGTTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
26593449 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
26593514 AATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
455 AATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
26593579 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
520 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
26593644 TTTACCTTGTTGTTTCATTGT
585 TTTACC-T-TTGTTTCATTGT
26593665 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* * *
26593730 ACAATGATTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
* ** *
26593795 TCAAAAGCATTAGGCTTCGAGTGCTTCCCCTATAAACTTTTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
26593860 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
26593925 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
26593990 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
26594055 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
*
26594120 AATCACTCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
455 AATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
26594185 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
520 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
26594250 TTTACCTTGTTGTTTCATTGT
585 TTTACC-T-TTGTTTCATTGT
26594271 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* *
26594336 ACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
*
26594401 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
26594466 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
26594531 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
26594596 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
*
26594661 ATGTTGTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
*
26594726 AATCACTCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
455 AATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
26594791 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
520 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
26594856 TTTACCTTGTTGTTTCATTGT
585 TTTACC-T-TTGTTTCATTGT
26594877 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* *
26594942 ACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
*
26595007 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
26595072 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
26595137 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
26595202 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
26595267 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
*
26595332 AATCACTCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
455 AATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
26595397 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
520 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
26595462 TTTACCTTGTTGTTTCATTGT
585 TTTACC-T-TTGTTTCATTGT
26595483 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* * *
26595548 ACAATGATTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
* ** *
26595613 TCAAAAGCATTAGGCTTCGAGTGCTTCCCCTATAAACTTTTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
26595678 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
26595743 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
26595808 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
26595873 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
*
26595938 AATCACTCGAAAATTGTTTC-AATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATAT
455 AATCACGCGAAAATTG-TTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATAT
*
26596002 TTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAATGATAG
519 TTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAG
26596067 TTTTACC-TTGTTTCATTGT
584 TTTTACCTTTGTTTCATTGT
26596086 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* * *
26596151 ACAATGATTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
*
26596216 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
26596281 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
26596346 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
26596411 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
26596476 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
*
26596541 AATCACTCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
455 AATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
*
26596606 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAATGATAGT
520 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
26596671 TTTACC-TTGTTTCATTGT
585 TTTACCTTTGTTTCATTGT
*
26596689 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTTAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
** * *
26596754 ACAATGCTTTCATATTTTAAAGCTTAACTCCAGTGAAAATCATTTTCAAAAGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
* *
26596819 TCAAAACCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
26596884 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
26596949 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
26597014 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
*
26597079 ATGTTGTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
*
26597144 AATCACTCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
455 AATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
*
26597209 TTGAGCTTCAAAATCCTTTCAAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
520 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
26597274 TTTACCTTGTTGTTTCATTGT
585 TTTACC-T-TTGTTTCATTGT
26597295 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* ** *
26597360 ACAGTGCTTTCATATTTTAAAGCTTCACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
*
26597425 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
26597490 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
26597555 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
26597620 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
* *
26597685 ATGTTGTAAACTTCAAAATCCTTTATAACTTACACTTAGCACTATGAAAAACAACAAAAAATTAA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
* *
26597750 AATCACTCGAAAATTGTTCGAATGTTTTTTATACCCAGAATTGTTCGGAAACAAAGTCTGATATT
455 AATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
26597815 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
520 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
26597880 TTTACCTTGTTGTTTCATTGT
585 TTTACC-T-TTGTTTCATTGT
26597901 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* *
26597966 ACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
*
26598031 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
26598096 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
26598161 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
26598226 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
* *
26598291 ATGTTGTAAACTTCAAAATCCTTTATAACTTACACTTAGCACTATGAAAAACAACAAAAAATTAA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
*
26598356 AATCACTCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
455 AATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
26598421 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
520 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
26598486 TTTACCTTGTTGTTTCATTGT
585 TTTACC-T-TTGTTTCATTGT
26598507 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* * *
26598572 ACAATGCTTTCATATTTTAAAGGTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
*
26598637 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
26598702 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
*
26598767 CCTCAAAATGCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
* *
26598832 ATTAAAATCGT-CGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTCCAAAACCAAAATCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
*
26598896 ATGTATTAAACTTCAAAATCCTTTATAACTTAC-CTTAACACTATGAAAAACAACAAAAAATTAA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
* *
26598960 AATCACGCGAAAATTGTTCGAATATTTTTTTATCCCCAGAATTGTTCGGGAAACAAAGTCTGGAT
455 AATCACGCGAAAATTGTTCGAAT-GTTTTTTATGCCCAGAATTGTTC-GGAAACAAAGTCT-GAT
* * *
26599025 ATTTTGAGCTTC-AAATCCTTTCTAGGTTACGCTTAAAACTGTGGGAAAATTAAAAACCAATGGT
517 ATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGAT
26599089 AGTTTTACC-TTGTTTCATTGT
582 AGTTTTACCTTTGTTTCATTGT
* * ** * * *
26599110 TTGAGTAAGTTTAAAACATTTAATTCAATATATTCAAATTCATTTCCTTTTAAAAACCTTCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* ** *
26599175 ACAATTCTTTCATATTTTAAAGCTGGGGGACTATAGAGAAAATCA-TTTCGAAAGAAAAACATAA
66 ACAATGCTTTCATATTTTAAAGCT---GGACTCCAGAGAAAATCATTTTC-AAAGGAAAACATAA
* ** * * * *
26599239 AATTTCAAAAGCATTAGGCTT-TAGTGCTCCTTCTATAAACTGCTAAAACAAGTTAGCAGACAAC
127 AATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAAT
* ** * * * *
26599303 TAATCACGTCAAGCGCCAATAACAACTTCACAAATAATATCCAAATATC-AAGATCATTCAAATG
192 TAATCACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATA-CGAAGATCATTCATATG
* * * *
26599367 TAAT-CTCACAAGTTCCTTAGAGCACCTAAAAATGTATCT-CAAGCCAATAAGTATGAAACACAA
256 TAATCCTCA-AA-ATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAG
* *
26599430 CGAAAAATTAAAATCGTGCGATAATTGTGAGAATGGGTTTTATGCCCAAAATTGTTCAAAACCAA
319 CGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAA
26599495 AGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAA
384 AGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAA
* *
26599560 AATTAAAATCACGCGAAAATTGTTCGAATATTTTTTATCCCCAGAATTGTTCGGAAACAAAGTCT
449 AATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCT
* *
26599625 GATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGGAAAATTAAAAACCAAT
514 GATATTTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAAC
26599690 GATAGTTTTACC-TTGTTTCATTGT
579 GATAGTTTTACCTTTGTTTCATTGT
*
26599714 TTGAGCAGGTTTAAAGCATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* *
26599779 ACAATGCTTTCATATTTT-AAGCTTGACTCCAGTGAAAATCATTTTC-AAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
* *
26599842 TCAAATGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCAAATAATT-AT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
*
26599906 CACATTGAGCACCAATAACAACTTCATAAATAGTATCCTAATACGAAGATCATTCATTATGTAAT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCA-TATGTAAT
26599971 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCT-AAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
*
26600035 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAATCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
* *
26600100 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAATAGTATGAAAAACAACAAAAAATTAA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
*
26600165 AATCACACGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
455 AATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
26600230 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
520 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
26600295 TTTACCTTGTTGTTTCATTGT
585 TTTACC-T-TTGTTTCATTGT
26600316 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* * *
26600381 ACAATGCTTTCATATTTTAAAGGTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
*
26600446 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
26600511 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
*
26600576 CCTCAAAATCCTTAGAGCACCTAAAAATGCATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
*
26600641 ATTAAAATCGTGCGATAATTGTGAGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
26600706 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
* * *
26600771 AATCACGCGAAAATTGATCGAATATTTTTTATCCCCAGAATTGTTCGGAAACAAAGTCTGATATT
455 AATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
* *
26600836 TTGAGCTTCAAAATCCTTTCTAGGTTATGCTTAAGACTGTGGAAAAATTAAAAACCAACGATAGT
520 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
26600901 TTTACCTTGTTGTTTCATTGT
585 TTTACC-T-TTGTTTCATTGT
26600922 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* *
26600987 ACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
* *
26601052 TCAAAAGCATTAGGCTTCGAGTGCT-CCCCTTTAAACTGCTAAAACAATTTAGCACATAA-TATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
26601115 CACA-TGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATC
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATC
*
26601179 CTCAAAATCCTTAGAGCACCTAAAAATGTATCT-AAAGCAAATAAGTATGAAACATAGCGAAAAA
261 CTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAAA
26601243 TTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGA
326 TTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGA
26601308 TGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAAATTAA
391 TGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAAC-AAAAAATTAA
*
26601373 AATCACTCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
455 AATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
26601438 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
520 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
26601503 TTTACCTTGTTGTTTCATTGT
585 TTTACC-T-TTGTTTCATTGT
26601524 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* * *
26601589 ACAATGCTTTCATATTTTAAAGGTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
*
26601654 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
26601719 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
* *
26601784 CCTCAAAATCCTTAAAGCACCTAAAAATCTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
*
26601849 ATTAAAATCGTGCGATAATTGTGCGAATTGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
* *
26601914 ATGTTGTAAACTTCAAAATCCTTTATAACTTACACTTAGCACTATGAAAAACAACAAAAAATTAA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
*
26601979 AATCACTCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
455 AATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATT
*
26602044 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTAGAAAAATTAAAAACCAACGATAGT
520 TTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGT
26602109 TTTACCTTGTTGTTTCATTGT
585 TTTACC-T-TTGTTTCATTGT
*
26602130 TTGAGCAGGTTTAAAACATTCGGTTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* **
26602195 ACAATGCTTTCATATTTTAAAGCTTGACTCCATTGAAAATCATTTTCAAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
* *
26602260 TCAAAAGCATTATGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
*
26602325 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATATGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
*
26602390 CCTCAAAATCCTTAAAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
26602455 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
* *
26602520 ATGTTGTAAACTTCAAAATCCTTTATAACTTACACTTAGCACTATGAAAAACAACAAAAAATTAA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAA
* * * *
26602585 AACCACTCGAACATTGTTCGAATGTTTTTTTATGCCCAGAATTGTTCGAAAACAAAGTCTGATAT
455 AATCACGCGAAAATTGTTCGAATG-TTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATAT
*
26602650 TTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTAGAAAAATTAAAAACCAACGATAG
519 TTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAG
26602715 TTTTACCTTGTTGTTTCATTGT
584 TTTTACC-T-TTGTTTCATTGT
26602737 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* **
26602802 ACAATGCTTTCATATTTTAAAGCTTGACTCCATTGAAAATCATTTTCAAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
* *
26602867 TCAAAAGCATTATGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
26602932 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATT
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAA-T
*
26602997 CCTCAAAATCCTTAAAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
260 CCTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAA
26603062 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
325 ATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTG
26603127 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAAATTA
390 ATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAAC-AAAAAATTA
*
26603192 AAATCACTCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATAT
454 AAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATAT
* *
26603257 TTTGAGCTTAAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAATCAACGATAG
519 TTTGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAG
26603322 TTTTACCTTGTTGTTTCATTGT
584 TTTTACC-T-TTGTTTCATTGT
26603344 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
1 TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
* * *
26603409 ACAATGCTTTCATATTTTAAAGGTTGACTCCAGTGAAAATCATTTTCAAAGGAAAACATAAAATT
66 ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
*
26603474 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTATT
131 TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
*
26603539 CACATTGAGCACCAATACCAACTTCATAAATAATATCCTAATA
196 CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATA
26603582 TCCTAATACG
Statistics
Matches: 24518, Mismatches: 695, Indels: 483
0.95 0.03 0.02
Matches are distributed among these distances:
584 10 0.00
585 64 0.00
586 66 0.00
587 83 0.00
588 58 0.00
589 67 0.00
590 72 0.00
591 358 0.01
592 415 0.02
593 639 0.03
594 1122 0.05
595 1129 0.05
596 3356 0.14
597 1650 0.07
598 521 0.02
599 905 0.04
600 744 0.03
601 831 0.03
602 1324 0.05
603 2471 0.10
604 362 0.01
605 1140 0.05
606 5825 0.24
607 1207 0.05
608 99 0.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (603 bp):
TTGAGCAGGTTTAAAACATTCGATTCAATATATTCAAATTCATTTCCATTAAAAAACCTGCTAAA
ACAATGCTTTCATATTTTAAAGCTGGACTCCAGAGAAAATCATTTTCAAAGGAAAACATAAAATT
TCAAAAGCATTAGGCTTCGAGTGCTCCCCCTATAAACTGCTAAAACAATTTAGCACATAATTAAT
CACATTGAGCACCAATAACAACTTCATAAATAATATCCTAATACGAAGATCATTCATATGTAATC
CTCAAAATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAGCGAAAAA
TTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATTGTTCAAAACCAAAGTCTGA
TGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACACTATGAAAAACAACAAAAAATTAAA
ATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATTGTTCGGAAACAAAGTCTGATATTT
TGAGCTTCAAAATCCTTTCTAGGTTACGCTTAAAACTGTGGAAAAATTAAAAACCAACGATAGTT
TTACCTTTGTTTCATTGT
Found at i:26593612 original size:125 final size:125
Alignment explanation
Indices: 26593366--26593597 Score: 322
Period size: 125 Copynumber: 1.9 Consensus size: 125
26593356 AGCAAATAAG
* * * ** * *
26593366 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAGTTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
*
26593431 GTTCAAAACCAAAGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
* **
26593491 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATGTTTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
* * *
26593556 GTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
66 GTTC-AAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTT
26593598 CTAGGTTACG
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
125 89 0.97
126 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
Found at i:26594218 original size:125 final size:125
Alignment explanation
Indices: 26593972--26594203 Score: 324
Period size: 125 Copynumber: 1.9 Consensus size: 125
26593962 AGCAAATAAG
* * * * *
26593972 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
*
26594037 GTTCAAAACCAAAGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
* **
26594097 TATGAAAAACAACAAAAAATTAAAATCACT-CGAAAATTGTTCGAATGTTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATC-CTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAAT
* * *
26594161 TGTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
65 TGTTC-AAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTT
26594204 CTAGGTTACG
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
125 89 0.96
126 4 0.04
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
Found at i:26594824 original size:125 final size:125
Alignment explanation
Indices: 26594578--26594809 Score: 315
Period size: 125 Copynumber: 1.9 Consensus size: 125
26594568 AGCAAATAAG
* * * * *
26594578 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
*
26594643 GTTCAAAACCAAAGTCTGATGTTGTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
* **
26594703 TATGAAAAACAACAAAAAATTAAAATCACT-CGAAAATTGTTCGAATGTTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATC-CTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAAT
* * * *
26594767 TGTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
65 TGTTC-AAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTT
26594810 CTAGGTTACG
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
125 88 0.96
126 4 0.04
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
Found at i:26595430 original size:125 final size:125
Alignment explanation
Indices: 26595184--26595415 Score: 324
Period size: 125 Copynumber: 1.9 Consensus size: 125
26595174 AGCAAATAAG
* * * * *
26595184 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
*
26595249 GTTCAAAACCAAAGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
* **
26595309 TATGAAAAACAACAAAAAATTAAAATCACT-CGAAAATTGTTCGAATGTTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATC-CTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAAT
* * *
26595373 TGTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
65 TGTTC-AAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTT
26595416 CTAGGTTACG
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
125 89 0.96
126 4 0.04
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
Found at i:26596639 original size:125 final size:125
Alignment explanation
Indices: 26596393--26596624 Score: 324
Period size: 125 Copynumber: 1.9 Consensus size: 125
26596383 AGCAAATAAG
* * * * *
26596393 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
*
26596458 GTTCAAAACCAAAGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
* **
26596518 TATGAAAAACAACAAAAAATTAAAATCACT-CGAAAATTGTTCGAATGTTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATC-CTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAAT
* * *
26596582 TGTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
65 TGTTC-AAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTT
26596625 CTAGGTTACG
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
125 89 0.96
126 4 0.04
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
Done.