Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 276 of 402
Found at i:26597242 original size:125 final size:125
Alignment explanation
Indices: 26596996--26597227 Score: 315
Period size: 125 Copynumber: 1.9 Consensus size: 125
26596986 AGCAAATAAG
* * * * *
26596996 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
*
26597061 GTTCAAAACCAAAGTCTGATGTTGTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
* **
26597121 TATGAAAAACAACAAAAAATTAAAATCACT-CGAAAATTGTTCGAATGTTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATC-CTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAAT
* * * *
26597185 TGTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
65 TGTTC-AAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTT
26597228 CAAGGTTACG
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
125 88 0.96
126 4 0.04
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
Found at i:26597824 original size:125 final size:125
Alignment explanation
Indices: 26597602--26597833 Score: 306
Period size: 125 Copynumber: 1.9 Consensus size: 125
26597592 AGCAAATAAG
* * * * * *
26597602 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATACCCAGAATT
*
26597667 GTTCAAAACCAAAGTCTGATGTTGTAAACTTCAAAATCCTTTATAACTTACACTTAGCAC
66 GTTCAAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTTATAACTTACACTTAGCAC
* **
26597727 TATGAAAAACAACAAAAAATTAAAATCACT-CGAAAATTGTTCGAATGTTTTTTATACCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATC-CTGCGAAAATTGTGCGAATGGGTTTTATACCCAGAAT
* * * *
26597791 TGTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
65 TGTTC-AAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTT
26597834 CTAGGTTACG
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
125 87 0.96
126 4 0.04
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATACCCAGAATT
GTTCAAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTTATAACTTACACTTAGCAC
Found at i:26598430 original size:125 final size:125
Alignment explanation
Indices: 26598208--26598439 Score: 315
Period size: 125 Copynumber: 1.9 Consensus size: 125
26598198 AGCAAATAAG
* * * * *
26598208 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
*
26598273 GTTCAAAACCAAAGTCTGATGTTGTAAACTTCAAAATCCTTTATAACTTACACTTAGCAC
66 GTTCAAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTTATAACTTACACTTAGCAC
* **
26598333 TATGAAAAACAACAAAAAATTAAAATCACT-CGAAAATTGTTCGAATGTTTTTTATGCCCAGAAT
1 TATGAAAAACAACAAAAAATTAAAATC-CTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAAT
* * * *
26598397 TGTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
65 TGTTC-AAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTT
26598440 CTAGGTTACG
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
125 88 0.96
126 4 0.04
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATGGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTTATAACTTACACTTAGCAC
Found at i:26599664 original size:125 final size:125
Alignment explanation
Indices: 26599418--26599649 Score: 304
Period size: 125 Copynumber: 1.9 Consensus size: 125
26599408 AGCCAATAAG
* * ** * * *
26599418 TATGAAACACAACGAAAAATTAAAATCGTGCGATAATTGTGAGAATGGGTTTTATGCCCAAAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGAGAATAGGTTTTATCCCCAAAATT
*
26599483 GTTCAAAACCAAAGTCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
66 GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
** ** *
26599543 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTTCGAATATTTTTTATCCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGAGAATAGGTTTTATCCCCAAAATT
* * *
26599608 GTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
66 GTTC-AAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTT
26599650 CTAGGTTACG
Statistics
Matches: 90, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
125 87 0.97
126 3 0.03
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCACGCGAAAATTGTGAGAATAGGTTTTATCCCCAAAATT
GTTCAAAACCAAAGTCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAACAC
Found at i:26600263 original size:125 final size:125
Alignment explanation
Indices: 26600015--26600248 Score: 317
Period size: 125 Copynumber: 1.9 Consensus size: 125
26600005 AAAGCAAATA
* * * *** *
26600015 AGTATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATGGGTTTTATGCCCAGAA
1 AGTATGAAAAACAACAAAAAATTAAAATCACACGAAAATTGTGCGAATGGGTTTTATGCCCAGAA
*
26600080 TTGTTCAAAACCAAAATCTGATGTTTTAAACTTCAAAATCCTTTATAACTTACACTTAAT
66 TTGTTCAAAACCAAAATCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAAT
* **
26600140 AGTATGAAAAACAACAAAAAATTAAAATCACACGAAAATTGTTCGAATGTTTTTTATGCCCAGAA
1 AGTATGAAAAACAACAAAAAATTAAAATCACACGAAAATTGTGCGAATGGGTTTTATGCCCAGAA
* * * *
26600205 TTGTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
66 TTGTTC-AAAACCAAAATCTGATATTTTAAACTTCAAAATCCTTT
26600249 CTAGGTTACG
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
125 90 0.97
126 3 0.03
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.31
Consensus pattern (125 bp):
AGTATGAAAAACAACAAAAAATTAAAATCACACGAAAATTGTGCGAATGGGTTTTATGCCCAGAA
TTGTTCAAAACCAAAATCTGATATTTTAAACTTCAAAATCCTTTATAACTTACACTTAAT
Found at i:26602053 original size:125 final size:125
Alignment explanation
Indices: 26601831--26602062 Score: 308
Period size: 125 Copynumber: 1.9 Consensus size: 125
26601821 AGCAAATAAG
* * * * *
26601831 TATGAAACACAGCGAAAAATTAAAATCGTGCGATAATTGTGCGAATTGGTTTTATGCCCAGAATT
1 TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATTGGTTTTATGCCCAGAATT
*
26601896 GTTCAAAACCAAAGTCTGATGTTGTAAACTTCAAAATCCTTTATAACTTACACTTAGCAC
66 GTTCAAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTTATAACTTACACTTAGCAC
* *
26601956 TATGAAAAACAACAAAAAATTAAAATCACT-CGAAAATTGTTCGAA-TGTTTTTTATGCCCAGAA
1 TATGAAAAACAACAAAAAATTAAAATC-CTGCGAAAATTGTGCGAATTG-GTTTTATGCCCAGAA
* * * *
26602019 TTGTTCGGAAA-CAAAGTCTGATATTTTGAGCTTCAAAATCCTTT
64 TTGTTC-AAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTT
26602063 CTAGGTTACG
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
124 2 0.02
125 86 0.93
126 4 0.04
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (125 bp):
TATGAAAAACAACAAAAAATTAAAATCCTGCGAAAATTGTGCGAATTGGTTTTATGCCCAGAATT
GTTCAAAACCAAAGTCTGATATTGTAAACTTCAAAATCCTTTATAACTTACACTTAGCAC
Found at i:26603883 original size:159 final size:158
Alignment explanation
Indices: 26603594--26603926 Score: 384
Period size: 159 Copynumber: 2.1 Consensus size: 158
26603584 CTAATACGAG
* * *
26603594 GGTTGCGGCAGCAGGATCGACAGCACGCGGGGGGGACTGGGCCGATCCCCAGCTTGCGCATTCTG
1 GGTTGCGGCAGCAGGACCGACAGCACGCGAGGGGGACTGGGCCGATCCCCAGCTTGCGCATTATG
* * * * * *
26603659 CCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCAT
66 CCTCTCCGACCAGCTCAGCACCAGCACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGCTCAT
* *
26603724 TC-CATGTCTAAGCCTCAG-TCGGACCGAA
131 TCTCA-GTCTAAG-ATCAGACCGGACCGAA
* * * * *
26603752 GGTTGTGGCAGCAGGACCGGCAGCACGCAGAGTGGGA-TCGGGTCGATCCCCGGCTTGCGCATTA
1 GGTTGCGGCAGCAGGACCGACAGCACGC-GAGGGGGACT-GGGCCGATCCCCAGCTTGCGCATTA
* * * * * * *
26603816 TGCCTCTTCGGCCAGCTCAGCACCAGCATGCTCGTTTCATGGGTTGACTTATGCATATGGAGTTC
64 TGCCTCTCCGACCAGCTCAGCACCAGCACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGCTC
26603881 ATTCTCAGTCTAAGATCAGACCGGACCGAA
129 ATTCTCAGTCTAAGATCAGACCGGACCGAA
* *
26603911 GGTTACGACAGCAGGA
1 GGTTGCGGCAGCAGGA
26603927 TTGATAACAC
Statistics
Matches: 145, Mismatches: 26, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
158 30 0.21
159 113 0.78
160 2 0.01
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.21
Consensus pattern (158 bp):
GGTTGCGGCAGCAGGACCGACAGCACGCGAGGGGGACTGGGCCGATCCCCAGCTTGCGCATTATG
CCTCTCCGACCAGCTCAGCACCAGCACGCCCGTTTCATGGGTTGACTTAGGCATAGGGAGCTCAT
TCTCAGTCTAAGATCAGACCGGACCGAA
Found at i:26604618 original size:26 final size:26
Alignment explanation
Indices: 26604582--26604632 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26604572 GTTGACTTAG
26604582 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
26604608 GCATACGGAGTTCATTTCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
26604633 TGATTGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26604992 original size:26 final size:26
Alignment explanation
Indices: 26604962--26605014 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26604952 ATTGACTTAG
26604962 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
26604988 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26605014 G
1 G
26605015 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26605347 original size:26 final size:26
Alignment explanation
Indices: 26605317--26605367 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26605307 TTGACTTAGG
*
26605317 CATACGGAGTTCATCCCCAGTCTAAT
1 CATACGAAGTTCATCCCCAGTCTAAT
*
26605343 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATCCCCAGTCTAA
26605368 GATCGGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAGTCTAAT
Found at i:26605406 original size:354 final size:360
Alignment explanation
Indices: 26604556--26605551 Score: 1082
Period size: 367 Copynumber: 2.7 Consensus size: 360
26604546 TGAGTGCTCG
* *
26604556 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTC
* * * * *
26604621 ATTTCCAGTCTATGATTGGACCGGATCGAGGGTTGCGATAGCAAGATCGACAGTAGGATCGACAG
66 ATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGCAAGATCGAC---A-G-T--AC-G
* ** * *
26604686 CATGTGAGGGAGACCGGATCGATCCCCGGCTTGTACATTCTGCCTCTCCAGTTGGCTGAGTGCCC
123 CA-G-G-GGG-GACCGG-CCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTG-CC
* * * * * *
26604751 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGTCGGA
182 GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCTCAGCCGGA
* ** * * * *
26604816 TTGAGGGTTATAACAGCAGAACCGACAGCGAGATCGGCAGCAGGCAAAGGGGGATCGGGTTGATC
247 TCGAGGGTTATGGCAGCAGAACCGACAGCAAGATCGACAGCACGCAAAGGGGGATCGGGCTGATC
* *
26604881 CCCGACTTGCACATTATGCCTCTCCAATCGGCCTCTCCGGCCGACTGAGCGCCCA
312 CCCGACTTACACATTATGCCTCTCCAA-C-G---CTCCGG-CGACTGAGCACCCA
* * *
26604936 CACGCTCATTTCATGGATTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATAC-AGAGTT
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGA-AGTT
* * *
26605000 CATTCCCAGTCTAAGATCGGA-TCGAATCGAGGGTTACGGTAGCAGGATCGACAGTACGCAGGGG
65 CATTCCCAGTCTAAGATCGGACT-GGATCGAGGGTTGCGGTAGCAAGATCGACAGTACGCAGGGG
* * *
26605064 GGATCGAGCCGATCCCTGGCTTGCGCA-TCTACCTCTCCGGTCGGCTGAGTGCCGGCACGCTCAT
129 GGACCG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCC-GCACGCTCAT
* * * *
26605128 TTCGTGGGTTAGCTTAGGCATACGGAGTACATTTCACGTCTAAGCCTCAGCCTGATCGAGGGTTG
192 TTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCTCAGCCGGATCGAGGGTTA
* * * * *
26605193 TGGCAGCAGGATCGACAGCAAGATCGACAGCACGCAGAA-GGGGATCGGGCTGATGCTCGGCTTA
257 TGGCAGCAGAACCGACAGCAAGATCGACAGCACGCA-AAGGGGGATCGGGCTGATCCCCGACTTA
* *
26605257 CGCATTATGCCTCTCC-A-G-T-C-G-G-TTGAGCACCCA
321 CACATTATGCCTCTCCAACGCTCCGGCGACTGAGCACCCA
*
26605290 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAATCATACGAAGTTC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTC
* * * *
26605355 ATTCCCAGTCTAAGATCGGACTGGATCGATGGTTGTGGCAGCAAGATCGACAGCACGCAGGGGGG
66 ATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGCAAGATCGACAGTACGCAGGGGGG
* * * ** ** * *
26605420 ACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTTCGGCCAACTGAGCACTCGTACGCCCATTT
131 ACC-GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGC-CGCACGCTCATTT
*
26605485 CGTGGGTTGGCTTAGGCATA-GAGAGCT-CATTCCATGTCTAAGCCTCAGCCGGATCGAGGGTTA
194 CGTGGGTTGGCTTAGGCATACG-GAG-TACATTCCACGTCTAAGCCTCAGCCGGATCGAGGGTTA
26605548 TGGC
257 TGGC
26605552 CGCGGGACTG
Statistics
Matches: 529, Mismatches: 75, Indels: 49
0.81 0.11 0.08
Matches are distributed among these distances:
354 146 0.28
355 89 0.17
356 2 0.00
357 1 0.00
358 1 0.00
359 1 0.00
363 1 0.00
366 3 0.01
367 149 0.28
368 21 0.04
369 4 0.01
370 1 0.00
371 1 0.00
372 3 0.01
373 2 0.00
375 1 0.00
376 1 0.00
377 1 0.00
380 101 0.19
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (360 bp):
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTC
ATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGCAAGATCGACAGTACGCAGGGGGG
ACCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCGCACGCTCATTTCG
TGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCTCAGCCGGATCGAGGGTTATGGC
AGCAGAACCGACAGCAAGATCGACAGCACGCAAAGGGGGATCGGGCTGATCCCCGACTTACACAT
TATGCCTCTCCAACGCTCCGGCGACTGAGCACCCA
Found at i:26605969 original size:26 final size:26
Alignment explanation
Indices: 26605939--26605991 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26605929 GTTAACTTAG
26605939 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
26605965 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26605991 G
1 G
26605992 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26606813 original size:157 final size:158
Alignment explanation
Indices: 26606357--26606848 Score: 481
Period size: 157 Copynumber: 3.1 Consensus size: 158
26606347 AAGCATATGA
* * * * *
26606357 AGTTCATTCCCAGTCTAAGATTAAACCGGACCGAGGGTAGAGACAGCAGGATCTACAGCACACA-
1 AGTTCATTCCTAGTCTAAGATCAAACCGGACCGAGGGTTGAGACAGCAGGATCGACAGCACGCAG
* ** * * * * * *
26606421 GGGGCACCGGGCTTATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCC
66 GGGGGACCGGGCCGATCCCTGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGTGCTCGCACGCT
* *
26606486 CGTTTCGTGGGTTGGTTTAGGCATAGGG
131 CGTTTCGTGGGTTGGCTTAGGCATACGG
* * ** * ** * * * * *
26606514 AGCTCGTTCCATA-TCTAAGCCCCAGTCGGACCGAGCGTTGTGGCAGCGGGACCGACAGCACGCA
1 AGTTCATTCC-TAGTCTAAGATCAAACCGGACCGAGGGTTGAGACAGCAGGATCGACAGCACGCA
* ** * ** * * * * * *
26606578 GAGAGGGACCGAACCGATCCTTGACTTTTGCATTAC-GGCTCTTCAGTCGGTTCAATGCTCGCAC
65 G-GGGGGACCGGGCCGATCCCTGACTTACGCATT-CTGCCTCTCCGGTCGGCTGAGTGCTCGCAC
* ** *
26606642 GCTCGTTTCATGGGTTAACTTATGCATACGG
128 GCTCGTTTCGTGGGTTGGCTTAGGCATACGG
** *
26606673 AGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAG
1 AGTTCATTCCTAGTCTAAGATCAAACCGGACCGAGGGTTGAGACAGCAGGATCGACAGCACGCAG
26606738 GGGGGACCGGGCCGA-CCCTGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGTGCTCGCACGCT
66 GGGGGACCGGGCCGATCCCTGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGTGCTCGCACGCT
26606802 CGTTTCGTGGGTTGGCTTAGGCATACGG
131 CGTTTCGTGGGTTGGCTTAGGCATACGG
*
26606830 ACTTCATTCC-ATGTCTAAG
1 AGTTCATTCCTA-GTCTAAG
26606849 CATACGGAAC
Statistics
Matches: 255, Mismatches: 73, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
156 2 0.01
157 123 0.48
158 15 0.06
159 114 0.45
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCTAGTCTAAGATCAAACCGGACCGAGGGTTGAGACAGCAGGATCGACAGCACGCAG
GGGGGACCGGGCCGATCCCTGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGTGCTCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGG
Found at i:26607586 original size:26 final size:26
Alignment explanation
Indices: 26607548--26607598 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26607538 TGACATAGGT
*
26607548 ATACGGAGCTCATCCCCAGTCTAAGC
1 ATACGAAGCTCATCCCCAGTCTAAGC
* *
26607574 ATACGAAGGTCATTCCCAGTCTAAG
1 ATACGAAGCTCATCCCCAGTCTAAG
26607599 ATTAGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (26 bp):
ATACGAAGCTCATCCCCAGTCTAAGC
Found at i:26607891 original size:184 final size:184
Alignment explanation
Indices: 26607699--26608125 Score: 499
Period size: 184 Copynumber: 2.3 Consensus size: 184
26607689 CTGGCGGAGT
* * * *
26607699 GCCCGCACGCTCTTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGT
1 GCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGC
* * * * *
26607764 CAGATCGAGGGTTGTAG-CAGCATGA-CTGGCAACGGGATCGACAGCACGCAGAGGGGGATCGTG
66 CAGACCGAGGGTTGT-GCCAGCAGGATC-GACAACGGGATCGACAGCACGCAAAGGGGGATCGGG
* * *
26607827 CTAATCCCT-GGCTTGCGCATTATGCCTCTCCGG-TCGGCCTCTCCGATCGGTTGAGC
129 CTAATCCCTAGG-TTGCGCATTATGCCTCTCCGGCT-GACCTCTCCGATCGGCTAAGC
* * *
26607883 GCCCGCACGCT-TGTTTCGTGGGTTGAATTAGGCATACGGAGTACATTCCATGTCGAAGCCCCAG
1 GCCCGCACGCTCT-TTTCGTGGGTTGACTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAG
* * ** *
26607947 CCGGACCGAGGGTTGTGCCAGCAGGATCGACAGCGGGATCGGTAGCATGCAAAGGGGGATCGGGC
65 CCAGACCGAGGGTTGTGCCAGCAGGATCGACAACGGGATCGACAGCACGCAAAGGGGGATCGGGC
* * * *
26608012 TGATCCCTAGGTTGCGCATTATGCCTCTCCGGCTGACCTCTTCGGTCGGCTAAGT
130 TAATCCCTAGGTTGCGCATTATGCCTCTCCGGCTGACCTCTCCGATCGGCTAAGC
* * *
26608067 GCCCGCACGCTCGTTTT-GTGGGTTGACTTAGGCATATGGAGTTCA-TCCCCAGTCTAAGC
1 GCCCGCACGCTC-TTTTCGTGGGTTGACTTAGGCATACGGAGTACATTCCAC-GTCTAAGC
26608126 ATACGGAGTT
Statistics
Matches: 205, Mismatches: 30, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
183 5 0.02
184 192 0.94
185 7 0.03
186 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (184 bp):
GCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGC
CAGACCGAGGGTTGTGCCAGCAGGATCGACAACGGGATCGACAGCACGCAAAGGGGGATCGGGCT
AATCCCTAGGTTGCGCATTATGCCTCTCCGGCTGACCTCTCCGATCGGCTAAGC
Found at i:26608134 original size:26 final size:26
Alignment explanation
Indices: 26608098--26608150 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26608088 GTTGACTTAG
*
26608098 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26608124 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26608150 G
1 G
26608151 ATTGAAGCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26609364 original size:26 final size:26
Alignment explanation
Indices: 26609334--26609412 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
26609324 GTTGACATAG
*
26609334 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTGTAA
*
26609360 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTGTAA
*
26609386 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTGTAA
26609412 G
1 G
26609413 ATCAGACCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTGTAA
Found at i:26609762 original size:26 final size:26
Alignment explanation
Indices: 26609726--26609778 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26609716 GTTGACTTAG
26609726 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
26609752 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26609778 G
1 G
26609779 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26610117 original size:26 final size:26
Alignment explanation
Indices: 26610081--26610133 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26610071 GTTGACTTAG
26610081 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26610107 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26610133 G
1 G
26610134 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26610168 original size:355 final size:354
Alignment explanation
Indices: 26609360--26610694 Score: 1382
Period size: 355 Copynumber: 3.7 Consensus size: 354
26609350 CCCAGTGTAA
*
26609360 GCATACGGAGTTCATCCCCAGTGTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT
1 GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT
* * ** * * *
26609425 CGAGGGTTGTGACAGTAGGATTGGTAGCACACAGGGGGGACCGGGCTGACCCCCTGCTTGTGCAT
66 CGAGGGTTGTGACAGCAGGATCGACAGCACAGAGGGGGGACCGGGCTGATCCCCGGCTTGTGCAT
* * * *
26609490 TCTGCCTCTCCGATCGACTGAGCG-CTGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGT
131 TCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
* * * * *
26609554 ACTTTCCACATCTAAGCCCCAGCTGGACCGAGGGTTATGGCAGCAGGACCGACAGCGAGATCGCC
196 ACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGA-AGCGAGATCGAC
* * * *
26609619 AGCACACAGAGGGGGATCGAGCTGATCCCCGACTGCGTATTATGC-CACTTCGGCTAGCCTC-CC
260 AACACGCAGAGGGGGATCGAGCTGATCCTCG---GC----T-TGCACA-TT---AT-GCCTCTCC
* * * * * *
26609682 CGACTGGCTGAACGCTCGCACGCTCGGTTAGTGGGTTGACTTAG
312 GGTC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
26609726 GCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGA
1 GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGA
* ** * * * * **
26609790 TCGAGGGTTATGGTAGCAGGATCGACAGCACAGACGGAGGATCGGGCCGATCCTTGGCTTGTGCA
65 TCGAGGGTTGTGACAGCAGGATCGACAGCACAGAGGGGGGACCGGGCTGATCCCCGGCTTGTGCA
* ** *
26609855 TTCTGCCTCTCCGATCGACTGAGCGCTTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAG
130 TTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG
**
26609920 TACATTCCACGTCTAAGCCCCAGCCGGACCGAAAGTTGTGGCAGCAGGACCGGAAGCGAGATCGA
195 TACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACC-GAAGCGAGATCGA
* *
26609985 TAACATGCAGAGGGGGATCGAGCTGATCCTCGGCTTGCACATTATGCCTCTCCGGTCGGCTGAGC
259 CAACACGCAGAGGGGGATCGAGCTGATCCTCGGCTTGCACATTATGCCTCTCCGGTCGGCTGAGC
26610050 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
324 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
26610081 GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGAT
1 GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT
* * * * ** * * *
26610146 CGAGGGTTGCGACTGTAGGATCGACAGTAC-GTAAAGGGAACCGGGCTGATCCTCAGCTTGTGCA
66 CGAGGGTTGTGACAGCAGGATCGACAGCACAG-AGGGGGGACCGGGCTGATCCCCGGCTTGTGCA
* * * * *
26610210 TTCTACCTCTCCGATCGACTGAGCGCCCGTATGTTCGTTTCGTGGGTTGGCCTAGGCATACGGAG
130 TTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG
** * * **
26610275 TACATTCCTTGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGACCAGTGGCGAGATC-A
195 TACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACC-GAAGCGAGATCGA
* ** * * * *
26610339 GCAACACGCATAAAGGGA-CTGGGCTGAT-CTCCAGCTTACATATTATGCCTCTCCGACCGGCCT
259 -CAACACGCAGAGGGGGATC-GAGCTGATCCT-CGGCTTGCACATTATGCCTCT----CCGG---
* *
26610402 CTCCGATCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
314 -T-CG---G-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
26610449 GCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGAT
1 GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT
* * * * **
26610514 CGAGGGTTGTGGCAGCAGGATCGACAGCACATAGGGGGGATCGGGCTGATCCCCGACTTACGCAT
66 CGAGGGTTGTGACAGCAGGATCGACAGCACAGAGGGGGGACCGGGCTGATCCCCGGCTTGTGCAT
* * *
26610579 TCTACCTCT-C-ATCCTG-TTGAGCGCCCGCACGC-CTATGTCGTGGGTTGGCTTAGGCATAGGG
131 TCTACCTCTCCGAT-C-GACTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGG
* * * ** * *
26610640 AGCT-CATTCCATGTCTAAGCCCTAGTCGGATTGAGGGTTGTGGTAGCGGGACCGA
193 AG-TACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGA
26610695 CACCACGCAA
Statistics
Matches: 821, Mismatches: 120, Indels: 56
0.82 0.12 0.06
Matches are distributed among these distances:
354 5 0.01
355 295 0.36
356 6 0.01
359 9 0.01
360 3 0.00
363 1 0.00
364 4 0.00
365 1 0.00
366 138 0.17
367 201 0.24
368 158 0.19
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (354 bp):
GCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT
CGAGGGTTGTGACAGCAGGATCGACAGCACAGAGGGGGGACCGGGCTGATCCCCGGCTTGTGCAT
TCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGT
ACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGAAGCGAGATCGACA
ACACGCAGAGGGGGATCGAGCTGATCCTCGGCTTGCACATTATGCCTCTCCGGTCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:26610479 original size:26 final size:26
Alignment explanation
Indices: 26610449--26610501 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26610439 GTTGACTTAG
* *
26610449 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
26610475 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
26610501 G
1 G
26610502 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:26610990 original size:159 final size:157
Alignment explanation
Indices: 26610475--26611133 Score: 447
Period size: 159 Copynumber: 4.2 Consensus size: 157
26610465 CCCAGTCTAA
* * * *
26610475 GCATACAGAGTTCATTCCCA-ATCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCAGGACCGAC
* * * * * * * * * *
26610539 AGCACATAG-GGGGGATCGGGCTGATCCCCGACTTACGCATTCTACCTCTCATCCTGTTGAGCGC
65 AGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTATGCATTATGCCTCT-TTCCGGCTCAGCGC
* *
26610603 CCGCACGC-C-TATGTCGTGGGTTGGCTTAG
129 CCGCACGCTCGT-T-TCGTGGGTTGACTTAT
** * * * * ** * *
26610632 GCATAGGGAGCTCATTCCATGTCTAAGCCCTAG-TCGGATTGAGGGTTGTGGTAGCGGGACCGAC
1 GCATACAGAGTTCATTCCATGTCTAAGACC-AGACCAGACCGAGGGTTGTGGCAGCAGGACCGAC
* * * * * * * **
26610696 ACCACGCAAAGGGGGATCGGGTCGATCCCCAGCTTGTGCATTATGCCTCTTCAACCGGCTCAATG
65 AGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTATGCATTATGCCTCTT--TCCGGCTCAGCG
** * *
26610761 CCCATACGCTCGTTTTGTGGGTTGACTGAT
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAT
* * *
26610791 GCATACAGAGTTCAGTCCATGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCAGGACCGAC
1 GCATACAGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCGAGGGTTGTGGCAGCAGGACCGAC
* **
26610855 AGCACGTAGAGGGGGATCAGGCCGATCTGCGGCTTATGCATTATGCCTCTTTGGCCGGCTCAGCG
65 AGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTATGCATTATGCCTCTTT--CCGGCTCAGCG
* *
26610920 GCCGCACGCTCGTTTCATGGGTTGACTTAT
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAT
* *** * ** * * * ** *
26610950 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGACCGGACCGAGGGTTACGACGGCAGAATTGAT
1 GCATACAGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCAGGACCGAC
* * * ** * * * *
26611014 AGCACGTA-AGGGGGA-CCGGTCGATCCACGGCTTGCGCATTCTGCCTC-TCCGATCGGTTGAGC
65 AGCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTATGCATTATGCCTCTTTC---CGGCTCAGC
* * * *
26611076 GCCCGCACCCTCGTTTCGTAGGTTGGCTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGACTTAT
* *
26611107 GCATACGGAGTTCATTCAATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
26611134 CATATGAAGC
Statistics
Matches: 389, Mismatches: 97, Indels: 32
0.75 0.19 0.06
Matches are distributed among these distances:
154 1 0.00
156 6 0.02
157 130 0.33
158 42 0.11
159 201 0.52
160 8 0.02
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAGCAGGACCGACA
GCACGTAGAGGGGGATCGGGCCGATCCCCGGCTTATGCATTATGCCTCTTTCCGGCTCAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAT
Found at i:26611846 original size:26 final size:26
Alignment explanation
Indices: 26611817--26611872 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
26611807 TGGGTTGACT
26611817 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
26611843 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
26611869 TAAG
1 TAAG
26611873 ATCGAACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:26612474 original size:368 final size:367
Alignment explanation
Indices: 26611769--26612801 Score: 1286
Period size: 368 Copynumber: 2.8 Consensus size: 367
26611759 GCGCATCTTG
* * * * *
26611769 CCTCTCTGGTCGGTTGAGCGCCCCGCACGCTTGTTCCATGGGTTGACTTAAGCATACGGAGTTCA
1 CCTCTCTGGTCGGCTGAGCG--CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
26611834 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGATTGAGGTTTGTGGC
64 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATAGAGGGTTGTGGC
*
26611898 AGCAGGATCGGCAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
128 AGCAGGATCGGTAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA
* * * * *
26611963 TTGGTTGAGCGCCTGCACACTCGTTTTGTGGGTTGGCTTAGGCACACGGAGTACATTCCACGTCT
193 TCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCT
** * *
26612028 AAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAAGACCGACATCGGGATCAACAGCACGCAGAGGG
258 AAGCCCCAGCCAAACCGAGGGTTGTGGTAGCAAGACCGACATCGGGATCAACAGCACGCAAAGAG
* *
26612093 GGATCGGGCTGATCCCCGACTTGCACATTATGCATCTCTG-GCTGA
323 GGATCGGGCTGATCCCCGACTTGCACATTATGCATCTCCGATC-GA
* * *
26612138 CTTCTCTGATCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCAT
1 CCTCTCTGGTCGGCTGAGCGC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* ** *
26612203 CCCCAGTCTAAGCATACGGAGTTCATTCCTCA-TCTAAGATCAGACCGGATCGAGGGTTACGGTA
65 CCCCAGTCTAAGCATACGGAGTTCATTCC-CAGTCTAAGATCAGACCGGATAGAGGGTTGTGGCA
* * * * *
26612267 GCAGGATCGATAGCAGGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGAT
129 GCAGGATCGGTAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAT
* * **
26612332 CGGTTGAGCGCCCGCACGCTCATTTCGTGCATTGGCTTAGGCATACGGAGTACATTCCATGTCTA
194 CGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTA
* * * * * *
26612397 AGCCCTAGCCAAACCGTGGGTTGTGGTAGCAGGACTGGCAGT-GGGATCGACAGCACGCAAAGAG
259 AGCCCCAGCCAAACCGAGGGTTGTGGTAGCAAGACCGACA-TCGGGATCAACAGCACGCAAAGAG
** * *
26612461 GGAT-GGAGCTGATCCCCGACTTGGGCATTATGCCTCTCCGATCGG
323 GGATCGG-GCTGATCCCCGACTTGCACATTATGCATCTCCGATCGA
* * * * *
26612506 CCTCACCGGTCGGCTGAGTGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGACTTCAT
1 CCTCTCTGGTCGGCTGAGCGCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
*
26612571 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAAGGTTGTGGCAG
65 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGTGGCAG
* * * * ** * * *
26612636 CAGGATCGGTAGCACACAAGGAGGATTGAGTTGATCCTCGGCTTACGCATTCTACCTCTCCGATC
130 CAGGATCGGTAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC
** * * *
26612701 GACTGAGCGCCCGTACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTA
195 GGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTA
* * ** * * *
26612765 AGCCTCAGTCGGACCAAGGGTTGTGGCAGCAGGACCG
259 AGCCCCAGCCAAACCGAGGGTTGTGGTAGCAAGACCG
26612802 TCAATATGCA
Statistics
Matches: 566, Mismatches: 89, Indels: 19
0.84 0.13 0.03
Matches are distributed among these distances:
367 6 0.01
368 537 0.95
369 23 0.04
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (367 bp):
CCTCTCTGGTCGGCTGAGCGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGTGGCAGC
AGGATCGGTAGCACGCAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCG
GTTGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAG
CCCCAGCCAAACCGAGGGTTGTGGTAGCAAGACCGACATCGGGATCAACAGCACGCAAAGAGGGA
TCGGGCTGATCCCCGACTTGCACATTATGCATCTCCGATCGA
Found at i:26612595 original size:26 final size:26
Alignment explanation
Indices: 26612556--26612608 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26612546 GTTGACTTAG
*
26612556 GCATATGGACTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
* *
26612582 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
26612608 G
1 G
26612609 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:26614157 original size:26 final size:26
Alignment explanation
Indices: 26614121--26614174 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
26614111 GGTTGACTTG
*
26614121 AGCATATGGAGTTCA-TCCCTAGTCTA
1 AGCATATGGAGTTAATTCCC-AGTCTA
26614147 AGCATATGGAGTTAATTCCCAGTCTA
1 AGCATATGGAGTTAATTCCCAGTCTA
26614173 AG
1 AG
26614175 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
AGCATATGGAGTTAATTCCCAGTCTA
Found at i:26614364 original size:341 final size:341
Alignment explanation
Indices: 26613708--26614491 Score: 923
Period size: 341 Copynumber: 2.3 Consensus size: 341
26613698 ACGACCCGTT
** *
26613708 CGATCCCCGACTTGCGCATCT-TGCCTCTCTGGTTGGCTGAGCGCCCGCATGCTCGTTTCGTGGG
1 CGATCCCCGACTTGCGCAT-TATGCCTCTCCAG-TGGCTGAGCGCCCGCAAGCTCGTTTCGTGGG
** *
26613772 TTGACTTAGGCATACGGAGTTCATCCACAGTCTAAGCATACAGACTTCTTTCCCAATCTATGATC
64 TTGACTTAGGCATACGGAGTTCATCC-CAGTCTAAGCATACAGACTTAATTCCCAATCTAAGATC
* * * * * * *
26613837 AGACTGGATCGAGGGTTGCGATAGCAGGATCGACAGAATGCAGGGGGGATCGAGCTGATCCTCGA
128 AGACTAGATCGAGGGTTGCGACAGCAGGATCGACAGAACGCAGGGGGGACCGAACCGATCCCCGA
* * ** * * * *
26613902 CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGC
193 CTTACGCATTCTGCCCCTCAAGCCAGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGC
* * * * *
26613967 ATAGGGAGCTCATTCTATGTCTAAGCCCTAGCCGGACCGAGGGTTATGGCAGCGGGACTTGCAGC
258 ATAGGGAGCTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAGCGGGACTGGAAGC
26614032 ACGCAG-GGGGAACC-AAG
323 ACGCAGAGGGGAACCGAAG
* *
26614049 CTGATCCCCGACTTGCGTATTATGCCTCTCCAGTGGCTGAGCGCCCGCAAGCTCATTTCGTGGGT
1 C-GATCCCCGACTTGCGCATTATGCCTCTCCAGTGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGT
* ** * *
26614114 TGACTT-GAGCATATGGAGTTCATCCCTAGTCTAAGCATATGGAGTTAATTCCCAGTCTAAGATC
65 TGACTTAG-GCATACGGAGTTCATCCC-AGTCTAAGCATACAGACTTAATTCCCAATCTAAGATC
* * * *
26614178 AGA-TCAGATCGAGGGTTTC-AGCAGCAGGATTGACAGCACGTAGGGGGGACCGAACCGATCCCC
128 AGACT-AGATCGAGGGTTGCGA-CAGCAGGATCGACAGAACGCAGGGGGGACCGAACCGATCCCC
* *
26614241 GGCTTACGTATTCTGCCCCTCAAGCCAGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAG
191 GACTTACGCATTCTGCCCCTCAAGCCAGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * *
26614306 GCATGGGGAGCTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTGGCAGCGGGACTGGAA
256 GCATAGGGAGCTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAGCGGGACTGGAA
* * * *
26614371 GCATGTAGAGGGGGACCGAAT
321 GCACGCAGAGGGGAACCGAAG
* * * * ** * * * *
26614392 CGATCCCCGGCTTGCGCATTATGCATTTTCGACCGGCTCAACGCCCGCACGCTCGTTTCATGGGT
1 CGATCCCCGACTTGCGCATTATGC-CTCTCCAGTGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGT
*
26614457 TGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
65 TGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAG
26614492 ATCAAACAGG
Statistics
Matches: 372, Mismatches: 60, Indels: 20
0.82 0.13 0.04
Matches are distributed among these distances:
340 4 0.01
341 250 0.67
342 54 0.15
343 60 0.16
344 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (341 bp):
CGATCCCCGACTTGCGCATTATGCCTCTCCAGTGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAGACTTAATTCCCAATCTAAGATCAGA
CTAGATCGAGGGTTGCGACAGCAGGATCGACAGAACGCAGGGGGGACCGAACCGATCCCCGACTT
ACGCATTCTGCCCCTCAAGCCAGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
GGGAGCTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAGCGGGACTGGAAGCACG
CAGAGGGGAACCGAAG
Found at i:26614449 original size:159 final size:159
Alignment explanation
Indices: 26614189--26614651 Score: 396
Period size: 159 Copynumber: 2.9 Consensus size: 159
26614179 GATCAGATCG
* * * * * * * *
26614189 AGGGTTTCAGCAGCAGGATTGACAGCACG-TAGGGGGGACCGAACCGATCCCCGGCTTACGTATT
1 AGGGTTGCAGCAGCAAGATCGACAACACGCAAGGGGGGACCGAATCGATCCCCGGCTTGCGCATT
* ** * * * * * * * ** *
26614253 CTGCCCCT-CAAGCCAGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATGGGGAGC
66 ATGCATCTCCGA-CCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * *
26614317 TCATTCCATGTCTAAGCCCCAACCGGATCG
130 TCATTCCATGTCTAAGCCCAAACAGGACCA
** ** * * * *
26614347 AGGGTTGTGGCAGCGGGACTGGA-AGCATG-TAGAGGGGGACCGAATCGATCCCCGGCTTGCGCA
1 AGGGTTGCAGCAGCAAGA-TCGACAACACGCAAG-GGGGGACCGAATCGATCCCCGGCTTGCGCA
* * * *
26614410 TTATGCATTTTCGACCGGCTCAACGCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAG
64 TTATGCATCTCCGACCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
**
26614475 TTCATTCCCA-GTCTAAGATCAAACAGGACCA
129 TTCATT-CCATGTCTAAGCCCAAACAGGACCA
* ** * *
26614506 AGGGTTGCAGTAGCAAGATCGACAACACGCAAGGGGGGACCGGGTCGATCCTCGGCTTGTGCATT
1 AGGGTTGCAGCAGCAAGATCGACAACACGCAAGGGGGGACCGAATCGATCCCCGGCTTGCGCATT
* * * * * * *
26614571 CTGCCTCTCCGACCGGCTGAGCGCCTGCACGCTCGTTTCGTTGGTTGACTTAGGCATATGGAGTT
66 ATGCATCTCCGACCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
26614636 CATTCCATGTCTAAGC
131 CATTCCATGTCTAAGC
26614652 ATACGGAGCT
Statistics
Matches: 242, Mismatches: 56, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
158 28 0.12
159 207 0.86
160 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
AGGGTTGCAGCAGCAAGATCGACAACACGCAAGGGGGGACCGAATCGATCCCCGGCTTGCGCATT
ATGCATCTCCGACCGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCCAAACAGGACCA
Found at i:26615397 original size:26 final size:26
Alignment explanation
Indices: 26615347--26615399 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26615337 GTTGACTTAG
*
26615347 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
26615373 GCATATGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
26615399 G
1 G
26615400 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:26615754 original size:26 final size:26
Alignment explanation
Indices: 26615715--26615767 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26615705 GTTGACTTAG
* * *
26615715 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAATCTAA
*
26615741 GCATACGGACTTCATTCCCAATCTAA
1 GCATACGGACTTCATCCCCAATCTAA
26615767 G
1 G
26615768 ATCGAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAATCTAA
Found at i:26615988 original size:368 final size:368
Alignment explanation
Indices: 26615310--26616011 Score: 876
Period size: 368 Copynumber: 1.9 Consensus size: 368
26615300 CTCTGGTCGA
* * *
26615310 CTGAGCGCCTGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * ** * * *
26615375 ATATGGAGTTCATTCTCAATCTAAGATCAGACCGGATTGAGGGTTGCGATAGTAGGATCAACAGC
66 ATACGGACTTCATTCCCAATCTAAGATCAGACCGGACAGAGGGTTACGAGAGCAGGATCAACAGC
* * * * * *
26615440 GCGCAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTTCGACCGACTGAGCGCCCG
131 ACGCAGGGGGGACAGAGCCGATCCCCGACTTACACATTCTGCCTCTCCGACCGACGGAGCGCCCG
* * * ** *
26615505 TACGCTCGTTTCATGGGTTGGATTAGGCATACGGAGTACATTCCACATCTAAGCGTCAGTCGGAC
196 GACGCCCGTTTCATGGGTTGGATGAGGCATACGGAGTACATTCCACATCTAAGCCCCAGCCGGAC
* * * * *
26615570 CGAGGGCTGCGGCAACAGGACCAGCAGCGGGATCGGCAGCACGTAGAGGGGGATCGGGCTGAT-C
261 CAAAGGCTGCGGCAACAAGACCAGCAGCGGGATCGGCAGCACGCAGAGGGGGATCAGGCTGATCC
26615634 TCAGGCTTACACATTATGCCTCTCCGGCCAGCCTCTCCGACCGG
326 TC-GGCTTACACATTATGCCTCTCCGGCCAGCCTCTCCGACCGG
*
26615678 CTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * *
26615743 ATACGGACTTCATTCCCAATCTAAGATC-GAACTGGACAGAGGGTTACG-GCGCAGGATCGACAG
66 ATACGGACTTCATTCCCAATCTAAGATCAG-ACCGGACAGAGGGTTACGAGAGCAGGATCAACAG
* *
26615806 CACGCAGGGGGGACAGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCC-AGCCGACGGAGCGCC
130 CACGCAGGGGGGACAGAGCCGATCCCCGACTTACACATTCTGCCTCTCCGA-CCGACGGAGCGCC
* * * * * **
26615870 TGGATGCCCGTTTCGTGGGTTGGCTGAGGGCATATGGAGCT-CATTCCATGTCTAAGCCCCAGCC
194 CGGACGCCCGTTTCATGGGTTGGATGA-GGCATACGGAG-TACATTCCACATCTAAGCCCCAGCC
* * * * * * *
26615934 GGACCAAAGGTTGTGGTAGCAAGACC-GACAGCGGGATCGGTAGCATGCAGAGGGGGATCAGGTT
257 GGACCAAAGGCTGCGGCAACAAGACCAG-CAGCGGGATCGGCAGCACGCAGAGGGGGATCAGGCT
26615998 GATCCTCGGCTTAC
321 GATCCTCGGCTTAC
26616012 GCACGCCCGT
Statistics
Matches: 280, Mismatches: 48, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
366 1 0.00
367 87 0.31
368 188 0.67
369 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (368 bp):
CTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACGGACTTCATTCCCAATCTAAGATCAGACCGGACAGAGGGTTACGAGAGCAGGATCAACAGC
ACGCAGGGGGGACAGAGCCGATCCCCGACTTACACATTCTGCCTCTCCGACCGACGGAGCGCCCG
GACGCCCGTTTCATGGGTTGGATGAGGCATACGGAGTACATTCCACATCTAAGCCCCAGCCGGAC
CAAAGGCTGCGGCAACAAGACCAGCAGCGGGATCGGCAGCACGCAGAGGGGGATCAGGCTGATCC
TCGGCTTACACATTATGCCTCTCCGGCCAGCCTCTCCGACCGG
Found at i:26616519 original size:22 final size:22
Alignment explanation
Indices: 26616477--26616520 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
26616467 CCCAGGGCAC
**
26616477 CATCGTCGGAGCATCGTCGGAG
1 CATCGTCGGAGCATCACCGGAG
26616499 CATCGTCGGAGCATCACCGGAG
1 CATCGTCGGAGCATCACCGGAG
26616521 AGCCTAACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.34, T:0.16
Consensus pattern (22 bp):
CATCGTCGGAGCATCACCGGAG
Found at i:26616520 original size:11 final size:11
Alignment explanation
Indices: 26616477--26616513 Score: 74
Period size: 11 Copynumber: 3.4 Consensus size: 11
26616467 CCCAGGGCAC
26616477 CATCGTCGGAG
1 CATCGTCGGAG
26616488 CATCGTCGGAG
1 CATCGTCGGAG
26616499 CATCGTCGGAG
1 CATCGTCGGAG
26616510 CATC
1 CATC
26616514 ACCGGAGAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:26617294 original size:158 final size:157
Alignment explanation
Indices: 26616955--26617632 Score: 596
Period size: 158 Copynumber: 4.3 Consensus size: 157
26616945 CGCATGCCTG
* * * ** * *
26616955 TTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGT
1 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCA-GTCTAAG-ATCAGACCAGATCGAGGGT
* * * * * * * *
26617019 TGTGGTAGCGGGACCGACAGCACGCAGAGGGGGTCCAAGC-TGCTCCCCGGCTTGCGCATTATGC
64 TGTGGCAGCAGGATCGACAGCATGCAG-GGGGGACC-GGCTTGATCCCCGGCTTACGCATTATGC
**
26617083 CTCT-TCGATCGGCTCAA-CGCCTACACGCTCA
127 CTCTCT-GATCGGCT-AAGCGCCCGCACGCTCA
* * * *
26617114 TTTCGTGGGTTGACTTATGCATAAGGATTTCATTCCTAGTCTAAGATCAGATCAGATCGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCC-AGTCTAAGATCAGACCAGATCGAGGGTT
* * * * * *
26617179 GTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGACTTGATCCCCGACTTACACATTCTGCCTC
65 GTGGCAGCAGGATCGACAGCATGCAGGGGGGACCGGCTTGATCCCCGGCTTACGCATTATGCCTC
** * *
26617244 TCTGGCCGGCTAAGTGCCCGCACGCCCA
130 TCTGATCGGCTAAGCGCCCGCACGCTCA
* * * **
26617272 TTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-CCAGATCGAGGGT
1 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCA-GTCTAAG-ATCAGACCAGATCGAGGGT
** * *** * * ** *
26617336 TGTGGCAGTGGGACCGGTTGCATGCAGAGGGGACCGGGC-CGATCCTTGGCTTATGCATTATGCC
64 TGTGGCAGCAGGATCGACAGCATGCAGGGGGGACC-GGCTTGATCCCCGGCTTACGCATTATGCC
* * *
26617400 TCT-TCGATCGGCTCAGCACCCGCACGCTCG
128 TCTCT-GATCGGCTAAGCGCCCGCACGCTCA
* * *
26617430 TTTCATGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATT-CCAGTCTAAGATCAGACCAGATCGAGGGTT
** * * * * *
26617495 GTGGCAGCATAATCGACAGCATGCAGGGGGGACCGGGTTGATCCCCGGTTTGCGCATTTTACCTC
65 GTGGCAGCAGGATCGACAGCATGCAGGGGGGACCGGCTTGATCCCCGGCTTACGCATTATGCCTC
* * * *
26617560 TCTGATCGGCTGAGCGCACGCACACTCG
130 TCTGATCGGCTAAGCGCCCGCACGCTCA
* *
26617588 TTTCGTGGGTTGGCTTAGGCATATGGAATTCATTCCAAGTCTAAG
1 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCC-AGTCTAAG
26617633 CATACAGAGC
Statistics
Matches: 411, Mismatches: 94, Indels: 29
0.77 0.18 0.05
Matches are distributed among these distances:
157 12 0.03
158 316 0.77
159 82 0.20
160 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (157 bp):
TTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCAGTCTAAGATCAGACCAGATCGAGGGTTG
TGGCAGCAGGATCGACAGCATGCAGGGGGGACCGGCTTGATCCCCGGCTTACGCATTATGCCTCT
CTGATCGGCTAAGCGCCCGCACGCTCA
Found at i:26617538 original size:316 final size:317
Alignment explanation
Indices: 26616955--26617633 Score: 883
Period size: 316 Copynumber: 2.1 Consensus size: 317
26616945 CGCATGCCTG
*
26616955 TTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* * * * *
26617020 GTGGTAGCGGGACCGACAGCACGCAGAGGGGGTCCAAGCTGCTCCCCGGCTTGCGCATTATGCCT
66 GTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAAGCCGATCCCCGGCTTACGCATTATGCCT
* * * *
26617085 CTTCGATCGGCTCAACGCCTACACGCTCATTTCGTGGGTTGACTTATGCATAAGGATTTCATTCC
131 CTTCGATCGGCTCAACACCCACACGCTCATTTCATGGGTTGACTTATGCATAAGGAGTTCATTCC
* * * * *
26617150 TAGTCTAAGATCAGATCAGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGATCGA
196 CAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGAATCGACAGCACGCAGGGGGGACCGA
* * * * *
26617215 CTTGATCCCCGACTTACACATTCTGCCTCTCTGGCCGGCTAAGTGCCCGCACGCCCA
261 CTTGATCCCCGACTTACACATTCTACCTCTCTGACCGGCTAAGCGCACGCACACCCA
*
26617272 TTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
* *** * ** ** *
26617337 GTGGCAGTGGGACCGGTTGCATGCAGA-GGGGACCGGGCCGATCCTTGGCTTATGCATTATGCCT
66 GTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAAGCCGATCCCCGGCTTACGCATTATGCCT
* * * *
26617401 CTTCGATCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATATGGAGTTCATTCC
131 CTTCGATCGGCTCAACACCCACACGCTCATTTCATGGGTTGACTTATGCATAAGGAGTTCATTCC
* * *
26617466 CAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCATAATCGACAGCATGCAGGGGGGACCGG
196 CAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGAATCGACAGCACGCAGGGGGGACCGA
* ** * * * * * * *
26617531 GTTGATCCCCGGTTTGCGCATTTTACCTCTCTGATCGGCTGAGCGCACGCACACTCG
261 CTTGATCCCCGACTTACACATTCTACCTCTCTGACCGGCTAAGCGCACGCACACCCA
* ** *
26617588 TTTCGTGGGTTGGCTTAGGCATATGGAATTCATTCCAAGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGC
26617634 ATACAGAGCT
Statistics
Matches: 310, Mismatches: 52, Indels: 1
0.85 0.14 0.00
Matches are distributed among these distances:
316 226 0.73
317 84 0.27
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (317 bp):
TTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
GTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAAGCCGATCCCCGGCTTACGCATTATGCCT
CTTCGATCGGCTCAACACCCACACGCTCATTTCATGGGTTGACTTATGCATAAGGAGTTCATTCC
CAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGAATCGACAGCACGCAGGGGGGACCGA
CTTGATCCCCGACTTACACATTCTACCTCTCTGACCGGCTAAGCGCACGCACACCCA
Found at i:26618360 original size:26 final size:27
Alignment explanation
Indices: 26618323--26618380 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
26618313 CATGGGTTGA
*
26618323 CTAAGCCATACGGAGTTGATCCCCAGT
1 CTAAGCCATACGGAGTTCATCCCCAGT
*
26618350 CTAAG-CATACGGAGTTCATTCCCAGT
1 CTAAGCCATACGGAGTTCATCCCCAGT
26618376 CTAAG
1 CTAAG
26618381 ATTAGACCGG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (27 bp):
CTAAGCCATACGGAGTTCATCCCCAGT
Found at i:26618725 original size:26 final size:26
Alignment explanation
Indices: 26618695--26618747 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26618685 GTTGACTTAG
*
26618695 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
26618721 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26618747 G
1 G
26618748 ATCTGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26619236 original size:26 final size:26
Alignment explanation
Indices: 26619196--26619248 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26619186 GTTGGCTTAG
* *
26619196 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCAAGTCTAA
26619222 GCATACGGAGCTCATTCCAAGTCTAA
1 GCATACGGAGCTCATTCCAAGTCTAA
26619248 G
1 G
26619249 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCAAGTCTAA
Found at i:26621552 original size:26 final size:26
Alignment explanation
Indices: 26621515--26621567 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
26621505 GCTGACTTAG
26621515 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
26621541 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
26621567 G
1 G
26621568 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:26621766 original size:21 final size:21
Alignment explanation
Indices: 26621733--26621782 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
26621723 GAGCCCCAGC
*
26621733 CGGACCGATGGTTGTGGTAGT
1 CGGACCGAGGGTTGTGGTAGT
*
26621754 CGGATCGAGGGTTGTGGTAGT
1 CGGACCGAGGGTTGTGGTAGT
*
26621775 AGGACCGA
1 CGGACCGA
26621783 CATCGGTAGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.18, C:0.14, G:0.44, T:0.24
Consensus pattern (21 bp):
CGGACCGAGGGTTGTGGTAGT
Found at i:26621852 original size:13 final size:13
Alignment explanation
Indices: 26621834--26621859 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26621824 TGTGCATTAT
26621834 GCCTCTCCGATCG
1 GCCTCTCCGATCG
26621847 GCCTCTCCGATCG
1 GCCTCTCCGATCG
26621860 ACTGAGTGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.46, G:0.23, T:0.23
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:26622294 original size:158 final size:158
Alignment explanation
Indices: 26622072--26622425 Score: 383
Period size: 158 Copynumber: 2.2 Consensus size: 158
26622062 CCATTTCGTA
* ** * * * * * * * *
26622072 GGTTGGCTTAGGCATGGGGAGCTCATTCCATGTCTAAG-CCCAGTCAGACCGATGGTTGTGGTAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGACT-AGACTGAAGGCTGCGGTAG
** * *
26622136 CAGGACCGACAGCACGTAG-AGGGGGATCGGGCCGATCCCC-GACTTGCGCATTATGCCTCTTCA
65 CAGGACCGACAGCACACAGTA-GGGGATCGGGCCGAACCCCAG-CTTGCGCATTATACCTCTTCA
* *
26622199 GCAGGCTCAACACCCGTACGCTCGTTTCATG
128 GCAGACTCAACACCAGTACGCTCGTTTCATG
* *
26622230 GGTTGACTTATGCATATGGAGTTCATTCCCA-GTCTAAGATCGACTAGACTGAAGGCTGCGGTAG
1 GGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCGACTAGACTGAAGGCTGCGGTAG
* * * *
26622294 CAGGATCGACAGCACACAGTAGGGGATCGGGTCGAACCCCAGCTTGCGCATTCTACCTCTTCGGC
65 CAGGACCGACAGCACACAGTAGGGGATCGGGCCGAACCCCAGCTTGCGCATTATACCTCTTCAGC
* * * * *
26622359 CGACTGAGCACCAGTATGCTCGTTTCCTG
130 AGACTCAACACCAGTACGCTCGTTTCATG
*
26622388 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
26622426 CATAGGGAGC
Statistics
Matches: 161, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
157 3 0.02
158 150 0.93
159 8 0.05
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCGACTAGACTGAAGGCTGCGGTAGC
AGGACCGACAGCACACAGTAGGGGATCGGGCCGAACCCCAGCTTGCGCATTATACCTCTTCAGCA
GACTCAACACCAGTACGCTCGTTTCATG
Found at i:26622439 original size:26 final size:26
Alignment explanation
Indices: 26622399--26622452 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
26622389 GTTGGCTTAG
*
26622399 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGCTCATTCCTA-GTCTAA
*
26622425 GCATAGGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCTAGTCTAA
26622451 GC
1 GC
26622453 GGGATCGGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCTAGTCTAA
Found at i:26622601 original size:26 final size:26
Alignment explanation
Indices: 26622571--26622620 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
26622561 TTTACTTAGG
26622571 CATACAGAGTTCA-TCCCTAGTCTAAC
1 CATACAGAGTTCATTCCC-AGTCTAAC
*
26622597 CATACGGAGTTCATTCCCAGTCTA
1 CATACAGAGTTCATTCCCAGTCTA
26622621 GGATTGGATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:26623704 original size:26 final size:26
Alignment explanation
Indices: 26623664--26623716 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26623654 GTTGACTTAG
* *
26623664 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGCTCATTCCCA-GTCTAA
26623690 GCATACGAAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
26623716 G
1 G
26623717 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:26624135 original size:44 final size:44
Alignment explanation
Indices: 26624085--26624172 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
26624075 TTTTGTGCAT
26624085 GCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGAGACAA
1 GCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGAGACAA
26624129 GCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGAGACAA
1 GCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGAGACAA
26624173 AAGTCTTTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.45, C:0.25, G:0.14, T:0.16
Consensus pattern (44 bp):
GCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGAGACAA
Found at i:26624848 original size:26 final size:26
Alignment explanation
Indices: 26624811--26624863 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26624801 GTTAACTTAG
*
26624811 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
26624837 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
26624863 G
1 G
26624864 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:26625298 original size:158 final size:156
Alignment explanation
Indices: 26624837--26625338 Score: 537
Period size: 158 Copynumber: 3.2 Consensus size: 156
26624827 CCCAATCTAA
* * * * *
26624837 GCATACGAAGTTCATTCCCA-ATCTAAGATCGGATCGGACCGAGGGTTGCGACT-GTAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGTG-GTAGCAGGATCGG
* * * * *
26624900 TAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCTAAGCG
64 CAGCACGCAGGGGGGACCGGG-CGATCCCCGGCTT-GGCATTCTGCCTCTTCGGTCGGCTAAGCG
* * *
26624965 GCCGCATGCCCATTTCATGGGTTGGCTTAG
127 CCCGCATGCTCGTTTCATGGGTTGGCTTAG
* * * ** * *
26624995 GCATAGGGAGCTCATTCCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-TCGGACCGAGGGTTGTGGTAGCAGGATCGGC
* * * * *
26625059 AGCATGCAGAGGGGGACCGGGCTGATCCCTGGCTTAGGCATTATGCCTCTTCGGTCGACTCAA-T
65 AGCACGCAG-GGGGGACCGGGC-GATCCCCGGCTT-GGCATTCTGCCTCTTCGGTCGGCT-AAGC
* * *
26625123 GCCCGCACGCTCGTTTCATGGGTTGACTTAT
126 GCCCGCATGCTCGTTTCATGGGTTGGCTTAG
* * *
26625154 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGATCAGACAGAGGGTTGTGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGATCGGACCGAGGGTTGTGGTAGCAGGATCGGC
** * *
26625218 AGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTTCGACCGGTTGAGCGC
65 AGCACGCAGGGGGGACCGGG-CGATCCCCGGCTTG-GCATTCTGCCTCTTCGGTCGGCTAAGCGC
26625283 CCGCATGCTCGTTTCATGGGTTGGCTTAG
128 CCGCATGCTCGTTTCATGGGTTGGCTTAG
*
26625312 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
26625339 CATACGGAGC
Statistics
Matches: 281, Mismatches: 51, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
157 10 0.04
158 141 0.50
159 123 0.44
160 7 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGATCGGACCGAGGGTTGTGGTAGCAGGATCGGCA
GCACGCAGGGGGGACCGGGCGATCCCCGGCTTGGCATTCTGCCTCTTCGGTCGGCTAAGCGCCCG
CATGCTCGTTTCATGGGTTGGCTTAG
Found at i:26626072 original size:26 final size:26
Alignment explanation
Indices: 26626034--26626086 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
26626024 GTTGACTTAG
26626034 GCATACTGGGTTCA-TCCGCAGTCTAA
1 GCATACTGGGTTCATTCC-CAGTCTAA
26626060 GCATAC-GGAGTTCATTCCCAGTCTAA
1 GCATACTGG-GTTCATTCCCAGTCTAA
26626086 G
1 G
26626087 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 20 0.80
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACTGGGTTCATTCCCAGTCTAA
Found at i:26626432 original size:26 final size:26
Alignment explanation
Indices: 26626402--26626454 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26626392 GTTGACTTAG
26626402 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
26626428 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26626454 G
1 G
26626455 ATCGTAGTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26627137 original size:26 final size:26
Alignment explanation
Indices: 26627087--26627139 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26627077 GTTGACTTAG
* *
26627087 GCATACGGAGTTCATCCCCGATCTAA
1 GCATAAGGAGTTCATCCCAGATCTAA
26627113 GCATAAGGAGTTCATTCCCAG-TCTAA
1 GCATAAGGAGTTCA-TCCCAGATCTAA
26627139 G
1 G
26627140 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCAGATCTAA
Found at i:26627371 original size:685 final size:684
Alignment explanation
Indices: 26626060--26627615 Score: 1777
Period size: 685 Copynumber: 2.3 Consensus size: 684
26626050 CGCAGTCTAA
* ** * *
26626060 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAGGATCGGCT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTG-CACAGCAGGATCGACA
* * * * * * * **
26626125 GTACGCATGAGGGACCGGATCGATCCTC-AGCTTGCGCATTCTGTCTCTCCGACCGGCTGAGCAC
65 GCACACAAGGGGGACCGGGTCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGC
** ** *
26626189 CCGCACTTTCATTTTATGGGTTGACTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCG
129 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCG
* ** ** * ** * *
26626254 AACCGAGGGTTGTGGTATTAGGATTGGCAGCAAGATCGGTAGCACGCAGAGGGGAACCGGGCTGA
194 AACCGAGGGTTATGGTAGCAGGACCGACAGCAAGATCGACAACACGCAGAGGGGAACCGAGCTGA
* * * * * *
26626319 TCCCCGGCTTGCGCATTATGCCTCTCCAGTCGGCCTCTTCGGTCGGCTGAGCATCCATATGCTCG
259 TCCCCGGCTTGCACATTATGCCTCTCCACTCGACCTCTCCGGTCGGCTGAGCACCCACATGCTCG
*
26626384 TTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAG
324 TTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAG
* ** * * *
26626449 TCTAAGATCGTAGTGGACCGAGGGTTGCGACAGCAGGATTGGCAGCACGCAGAGGGGATCGGGTC
389 TCTAAGATCGAACCGGACCGAGGGCTGCGACAGCAGGATCGGCAGCACGCAGAGGGGATCGGGCC
* * * * *
26626514 GATCCCCAGCTTGTGAATTCTGCCTCTCCGGTCGGCTGAGCACCCGAACGCCCGTTTCGTGGGTT
454 GATCCCCAGCTTGCGAATTCAGCCTCTCCGGCCGACTGAGCACCCGAACGCCCGTTTCATGGGTT
* * *
26626579 GGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGG
519 GGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGG
* * ** * * ** *
26626644 ACCGATAGCACACAGAGGGGGATCGGGCTGATCCTTGGCTTGTGTATTATGCCTCTTC-GATCGG
584 ACCGATAGCACACAGAGGGGGACCGAGCTGATCCCCGGCTTGTGCATTAGGCCGATTCAG-CCGG
* * *
26626708 CTCAACAG-CCGCACGCTCATTTCGCGGGTTGAGTTAT
648 CTC-ACAGCCCGCACGCTCATTTCACGGATTGACTTAT
* * *
26626745 GCATACGGAGTTTATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGCATCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCA-CAGCAGGATCGACA
* * * * *
26626810 GCACACAGGGGGGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTCTGCCCGGCTGAGTGCC
65 GCACACAAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCC
* * *
26626875 CGCACGCTCGTTTCGTGGGTTGGGTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGG
130 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAG-CCG
* ** * * * *
26626940 AGCC-AGGGTTATGGTAGCAGGACCGACAGCGGGATCGACAACATGTAGAGGGGGATCGAGCTGA
194 AACCGAGGGTTATGGTAGCAGGACCGACAGCAAGATCGACAACACGCAGAGGGGAACCGAGCTGA
* * * * ** *
26627004 TCCTCGGCTTGCACATTATGCCTTTCCGACT-GACCTCTCCGGTTGTCTGAGTGCCCGCATGCTC
259 TCCCCGGCTTGCACATTATGCCTCTCC-ACTCGACCTCTCCGGTCGGCTGAGCACCCACATGCTC
*
26627068 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC-GATCTAAGCATAAGGAGTTCATTCCC
323 GTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAG-TCTAAGCATAAGGAGTTCATTCCC
* * * *
26627132 AGTCTAAGATCGAACCGGATCGAGGGCTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGA-CTGG
387 AGTCTAAGATCGAACCGGACCGAGGGCTGCGACAGCAGGATCGGCAGCACGCAGAGGGGATC-GG
* * *
26627196 GCCGATCCCC-GACTTGCGGATTCAGCCTCTCCGGCCGACTGAGCGCCCGTACGCCCGTTTCATG
451 GCCGATCCCCAG-CTTGCGAATTCAGCCTCTCCGGCCGACTGAGCACCCGAACGCCCGTTTCATG
26627260 GGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAG
515 GGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAG
* * ** * *
26627325 CAGGATCGGTAGCACGTAGAGGGGGACC-AGATCGATCCCCGGCTTGTGCATTAGGTCGATTCAG
580 CAGGACCGATAGCACACAGAGGGGGACCGAGCT-GATCCCCGGCTTGTGCATTAGGCCGATTCAG
** *
26627389 CCGGCTCAGTGCCCGCACGCTCATTTCATGGATTGACTTAT
644 CCGGCTCACAGCCCGCACGCTCATTTCACGGATTGACTTAT
* * * * * * * *
26627430 GGATACAGACTTCATTCCCAATGTAAGATCGGATCAGACCAAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGC-ACAGCAGGATCGACA
* * * * * * **
26627495 GCACGTA-AAGGGGGAGC-GGTCGATCTCCGGCTTGTGCATTCTGCCTCTCCGGCAGGC-GCTTA
65 GCAC--ACAAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGT-
* * * *
26627557 GCCTGCCCGCTCATTTCGTGGGTTGGTTTAGGCATACGGAGTTCATTCCATGTCTAAGC
127 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGC
26627616 GTACGGAGCT
Statistics
Matches: 726, Mismatches: 131, Indels: 28
0.82 0.15 0.03
Matches are distributed among these distances:
684 9 0.01
685 698 0.96
686 18 0.02
687 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (684 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCACAGCAGGATCGACAG
CACACAAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCC
GCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGAA
CCGAGGGTTATGGTAGCAGGACCGACAGCAAGATCGACAACACGCAGAGGGGAACCGAGCTGATC
CCCGGCTTGCACATTATGCCTCTCCACTCGACCTCTCCGGTCGGCTGAGCACCCACATGCTCGTT
TCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTC
TAAGATCGAACCGGACCGAGGGCTGCGACAGCAGGATCGGCAGCACGCAGAGGGGATCGGGCCGA
TCCCCAGCTTGCGAATTCAGCCTCTCCGGCCGACTGAGCACCCGAACGCCCGTTTCATGGGTTGG
CTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGAC
CGATAGCACACAGAGGGGGACCGAGCTGATCCCCGGCTTGTGCATTAGGCCGATTCAGCCGGCTC
ACAGCCCGCACGCTCATTTCACGGATTGACTTAT
Found at i:26630177 original size:12 final size:12
Alignment explanation
Indices: 26630160--26630188 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
26630150 GATAAGTCTT
26630160 CACATAGGCCTC
1 CACATAGGCCTC
26630172 CACATAGGCCTC
1 CACATAGGCCTC
26630184 CACAT
1 CACAT
26630189 CGTCCCTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.28, C:0.41, G:0.14, T:0.17
Consensus pattern (12 bp):
CACATAGGCCTC
Found at i:26631650 original size:26 final size:26
Alignment explanation
Indices: 26631621--26631673 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26631611 GTTGACTTAG
26631621 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
26631647 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26631673 G
1 G
26631674 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26632094 original size:158 final size:157
Alignment explanation
Indices: 26631647--26632139 Score: 528
Period size: 158 Copynumber: 3.1 Consensus size: 157
26631637 CCCAGTCTAA
* * * * * *
26631647 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGAAGCTCATTCCCAGTCTAAGAT-TGAGCGGACCGAGGGTTGTGGTAGCAGGATCGACA
** * *
26631712 GCACACAGGGGGGATCGGGCCAATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCC
65 GCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCC
**
26631777 CGCATGCCCATTTCGTGGGTTGGCTTAG
130 CGCATGCTGATTTCGTGGGTTGGCTTAG
* * ** * ** *
26631805 GCATAGGGAGCTCATT-CCATGTCTAAGCCCT-AGCCGGACTGAGGGTTGTGGTAGTGGGAGC-A
1 GCATACGAAGCTCATTCCCA-GTCTAAG-ATTGAG-CGGACCGAGGGTTGTGGTAGCAGGATCGA
* * * ** ** * * *
26631867 GCAGCATGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTAGACCGGCTCAA
63 -CAGCATGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAG
* * *
26631932 CGCCCGCACGCTGATTTCGTGGGTTGACTTAT
126 CGCCCGCATGCTGATTTCGTGGGTTGGCTTAG
**
26631964 GCATACGAAGCTCATTCCCAGTCTAAGATTGGAGAAGACCGAGGG-TGTGGTAGCAGGATCGACA
1 GCATACGAAGCTCATTCCCAGTCTAAGATT-GAGCGGACCGAGGGTTGTGGTAGCAGGATCGACA
*
26632028 GCATGCAGGGGGGTATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGC
65 GCATGCAGGGGGG-ATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGC
26632093 CCGCATGCTCG-TTTCGTGGGTTGGCTTAG
129 CCGCATGCT-GATTTCGTGGGTTGGCTTAG
* *
26632122 GCATACGGAGTTCATTCC
1 GCATACGAAGCTCATTCC
26632140 ATGACTAAGC
Statistics
Matches: 265, Mismatches: 59, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 10 0.04
158 151 0.57
159 99 0.37
160 5 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (157 bp):
GCATACGAAGCTCATTCCCAGTCTAAGATTGAGCGGACCGAGGGTTGTGGTAGCAGGATCGACAG
CATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCC
GCATGCTGATTTCGTGGGTTGGCTTAG
Found at i:26633238 original size:26 final size:26
Alignment explanation
Indices: 26633208--26633260 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26633198 GTTGACTTAG
26633208 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26633234 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26633260 G
1 G
26633261 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26633554 original size:159 final size:158
Alignment explanation
Indices: 26633340--26633736 Score: 433
Period size: 159 Copynumber: 2.5 Consensus size: 158
26633330 TTACGCATTC
* * * * * * * *
26633340 TGCCTCTCCGATCGACTGAGCGGCCGCATGCCCGTTTCATGGGTTGGCTTATGCATAGGGAGCTC
1 TGCCTCTCCGGTCGGCTCAACGCCCGCATGCTCGTTTCATGGGTTGGCTTATGCATACGGAGTTC
* * * *
26633405 ATTCCATGTCTAAGCCCCAGCCGGACCGAGGATT-GTGGCAGCAGGACCGGCAGCACGCAGAGGG
66 ATTCCATGTCTAAGCCCCAACCGCACCGAGGATTAG-GACAGCAGGACCGACAGCACGCAG-GGG
* *
26633469 GGACCGGGTCAATC-CTCGGCTTGC-GCATTA
129 GGACCAGGTCAATCTC-CGACTTGCAG-ATTA
* * * *
26633499 TGCCTCTTCGGTCGGCTCAACGCCCGCATGCTCATTTCTTGGGTTGACTTATGCATACGGAGTTC
1 TGCCTCTCCGGTCGGCTCAACGCCCGCATGCTCGTTTCATGGGTTGGCTTATGCATACGGAGTTC
** * * *
26633564 ATTCTCA-GTCTAAGATCGAACCGCACCGAGGGTTAGGACAGCAGGATCGACAGCACGCAGGGGG
66 ATTC-CATGTCTAAGCCCCAACCGCACCGAGGATTAGGACAGCAGGACCGACAGCACGCAGGGGG
* *
26633628 GACCAGGTCGATCTCCGACTTGCAGATTC
130 GACCAGGTCAATCTCCGACTTGCAGATTA
* * ** * * *
26633657 TGTCTCTCCGGTCGGCTGAGTGCCCGCATGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGTTC
1 TGCCTCTCCGGTCGGCTCAACGCCCGCATGCTCGTTTCATGGGTTGGCTTATGCATACGGAGTTC
26633722 ATTCCATGTCTAAGC
66 ATTCCATGTCTAAGC
26633737 ATACGGAGCT
Statistics
Matches: 197, Mismatches: 36, Indels: 11
0.81 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 91 0.46
159 101 0.51
160 3 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
TGCCTCTCCGGTCGGCTCAACGCCCGCATGCTCGTTTCATGGGTTGGCTTATGCATACGGAGTTC
ATTCCATGTCTAAGCCCCAACCGCACCGAGGATTAGGACAGCAGGACCGACAGCACGCAGGGGGG
ACCAGGTCAATCTCCGACTTGCAGATTA
Found at i:26633714 original size:158 final size:157
Alignment explanation
Indices: 26633234--26633735 Score: 535
Period size: 158 Copynumber: 3.2 Consensus size: 157
26633224 CCCAGTCTAA
* * * *
26633234 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGATCGAAGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * *
26633298 AGCACGTAGGAGGGATCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCGACTGAGCGG
65 AGCACGCAGGGGGGACCGGGTCGATCCCGA-CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
*
26633363 CCGCATGCCCGTTTCATGGGTTGGCTTAT
129 CCGCATGCTCGTTTCATGGGTTGGCTTAT
* * ** * * * * * *
26633392 GCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGATTGTGGCAGCAGGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
26633457 GCACGCAGAGGGGGACCGGGTCAATCCTCGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAACGC
66 GCACGCAG-GGGGGACCGGGTCGATCC-CGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * *
26633522 CCGCATGCTCATTTCTTGGGTTGACTTAT
129 CCGCATGCTCGTTTCATGGGTTGGCTTAT
* *
26633551 GCATACGGAGTTCATTCTCA-GTCTAAGATCGAACCGCACCGAGGGTTAG-GACAGCAGGATCGA
1 GCATACGGAGTTCATTC-CATGTCTAAGATCGAACCGGACCGAGGGTT-GCGGCAGCAGGATCGA
* * *
26633614 CAGCACGCAGGGGGGACCAGGTCGATCTCCGACTTGCAG-ATTCTGTCTCTCCGGTCGGCTGAGT
64 CAGCACGCAGGGGGGACCGGGTCGATC-CCGACTTGC-GCATTCTGCCTCTCCGGTCGGCTGAGC
* * *
26633678 GCCCGCATGCTCGTTTCGTGGGTTGGTTTAG
127 GCCCGCATGCTCGTTTCATGGGTTGGCTTAT
26633709 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
26633736 CATACGGAGC
Statistics
Matches: 278, Mismatches: 58, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
157 5 0.02
158 145 0.52
159 124 0.45
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GCATGCTCGTTTCATGGGTTGGCTTAT
Found at i:26633738 original size:26 final size:26
Alignment explanation
Indices: 26633709--26633761 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26633699 GTTGGTTTAG
*
26633709 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
26633735 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
26633761 G
1 G
26633762 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:26634460 original size:26 final size:26
Alignment explanation
Indices: 26634431--26634535 Score: 174
Period size: 26 Copynumber: 4.0 Consensus size: 26
26634421 GTTAACTTAG
26634431 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26634457 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26634483 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
26634509 CCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26634535 G
1 G
26634536 ATCAGACCGG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26634900 original size:26 final size:26
Alignment explanation
Indices: 26634850--26634902 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26634840 GTTGACTTAG
*
26634850 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
26634876 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
26634902 G
1 G
26634903 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:26635166 original size:158 final size:154
Alignment explanation
Indices: 26634940--26635415 Score: 431
Period size: 158 Copynumber: 3.0 Consensus size: 154
26634930 CAGGATTGGC
* *** * *
26634940 AGCACGCAGAGGGGATCAAGC-CGATCCCTGGCTTGCGCATTCTGCCTCTTCTGTCGGTTGAGCG
1 AGCACACAGAGGGGATC-AGCTCGATCCCCAACTTGCGCATTCTGCCT-TTCGGTCGCTT-AGCG
* *
26635004 CCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCATCC
63 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TCATTCCATGTCTAAGCCCCA-CC
26635069 GGACCGAGGGTTGTGGCAGCAGGACCGAT
126 GGACCGAGGGTTGTGGCAGCAGGACCGAT
** * * * *
26635098 AGCACACAGAGGGGATGGGGCT-GATCCTCGACTTGCGCATTATGCCTATTCGGTCAGCTTAGCA
1 AGCACACAGAGGGGAT-CAGCTCGATCCCCAACTTGCGCATTCTGCCT-TTCGGTC-GCTTAGCG
* * * * **
26635162 CCCGCACGCTCGTTTCGTGGG-TGGACTTATGCATACGAAGTTCATTCCA-GTCTAAGATCGGAC
63 CCCGCACGCCCGTTTCGTGGGTTGG-CTTAGGCATACGGAG-TCATTCCATGTCTAAG-CCCCAC
* * * * *
26635225 CAGACCGAGGGTTGCGTCAGCAAGATCGAT
125 CGGACCGAGGGTTGTGGCAGCAGGACCGAT
** * * * * *
26635255 AGCACGTAGGGGGGATCAGCTCGATCCCCAACTTGCGTATTCTGCCTCTCTGGCTGGCTGAGCGC
1 AGCACACAGAGGGGATCAGCTCGATCCCCAACTTGCGCATTCTGCCTTTC-GG-TCGCTTAGCGC
* *
26635320 CCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCCT-AGCCCCAGCT
64 CCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGT-CATTCCATGT-CTAAGCCCCA-CC
* * * *
26635384 GGATCGAAGGTTATGGCAGCAGGACCGGT
126 GGACCGAGGGTTGTGGCAGCAGGACCGAT
26635413 AGC
1 AGC
26635416 GGGATCTACA
Statistics
Matches: 250, Mismatches: 55, Indels: 26
0.76 0.17 0.08
Matches are distributed among these distances:
156 6 0.02
157 119 0.48
158 120 0.48
159 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (154 bp):
AGCACACAGAGGGGATCAGCTCGATCCCCAACTTGCGCATTCTGCCTTTCGGTCGCTTAGCGCCC
GCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTCATTCCATGTCTAAGCCCCACCGGACC
GAGGGTTGTGGCAGCAGGACCGAT
Found at i:26635289 original size:157 final size:155
Alignment explanation
Indices: 26634876--26635367 Score: 488
Period size: 158 Copynumber: 3.1 Consensus size: 155
26634866 CCCAGTCTAA
* * * * **
26634876 GCATACGGAGTTCATTCTCAATCTAAGATCGGACTGGACTGAGGGTTGCGACAGCAGGATTGGCA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGATA
* * * *
26634941 GCACGCAGAGGGGATCAAGC-CGATCCCTGGCTTGCGCATTCTGCCTCTTCTGTCGGTTGAGCGC
65 GCACGCAGAGGGGATC-AGCTCGATCCCCGACTTGCGCATTCTGCCT-TTCGGTCGCTT-AGCGC
*
26635005 CCGCATGCCCGTTTCGTGGGTTGGCTTAG
127 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
* * * ** * * *
26635034 GCATAGGGAGCTCATTCCATGTCTAAG-CCCCATCCGGACCGAGGGTTGTGGCAGCAGGACCGAT
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGACAGCAGGATCGAT
* ** * * *
26635098 AGCACACAGAGGGGATGGGGCT-GATCCTCGACTTGCGCATTATGCCTATTCGGTCAGCTTAGCA
64 AGCACGCAGAGGGGAT-CAGCTCGATCCCCGACTTGCGCATTCTGCCT-TTCGGTC-GCTTAGCG
* *
26635162 CCCGCACGCTCGTTTCGTGGG-TGGACTTAT
126 CCCGCACGCCCGTTTCGTGGGTTGG-CTTAG
* * * *
26635192 GCATACGAAGTTCATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGTCAGCAAGATCGATAG
1 GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGATAG
* * * * * * *
26635257 CACGTAGGGGGGATCAGCTCGATCCCCAACTTGCGTATTCTGCCTCTCTGGCTGGCTGAGCGCCC
66 CACGCAGAGGGGATCAGCTCGATCCCCGACTTGCGCATTCTGCCTTTC-GG-TCGCTTAGCGCCC
*
26635322 GCACGCCCGTTTTGTGGGTTGGCTTAG
129 GCACGCCCGTTTCGTGGGTTGGCTTAG
*
26635349 GCATACGGAGTACATTCCA
1 GCATACGGAGTTCATTCCA
26635368 TGTCCTAGCC
Statistics
Matches: 266, Mismatches: 57, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
156 5 0.02
157 122 0.46
158 136 0.51
159 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGATAG
CACGCAGAGGGGATCAGCTCGATCCCCGACTTGCGCATTCTGCCTTTCGGTCGCTTAGCGCCCGC
ACGCCCGTTTCGTGGGTTGGCTTAG
Found at i:26635563 original size:26 final size:26
Alignment explanation
Indices: 26635533--26635585 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26635523 GTTGACTTAG
*
26635533 GCATACGAAGTTCATCCCCAGTGTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
26635559 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26635585 G
1 G
26635586 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26636056 original size:26 final size:26
Alignment explanation
Indices: 26636016--26636067 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26636006 GTTGGCTTAG
*
26636016 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
26636042 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
26636068 AATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:26636154 original size:11 final size:11
Alignment explanation
Indices: 26636138--26636163 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26636128 CCTGTGGCAC
26636138 CATCGTCGGAG
1 CATCGTCGGAG
26636149 CATCGTCGGAG
1 CATCGTCGGAG
26636160 CATC
1 CATC
26636164 ACTTGAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:26637134 original size:26 final size:26
Alignment explanation
Indices: 26637104--26637156 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26637094 GTTGACTTAG
26637104 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
26637130 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26637156 G
1 G
26637157 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26637337 original size:355 final size:355
Alignment explanation
Indices: 26636677--26637342 Score: 806
Period size: 355 Copynumber: 1.9 Consensus size: 355
26636667 CCACCCGTTC
* * * * *
26636677 GATCCCCGACTTACGCATTCTGCCTCCCTGGTCGGCTGAACGCCCGCACGTTCATTTCGTGGGTT
1 GATCCCCGACTTACACATTATGCCTCCCTGGCCGGCTGAACGCCCGCACGCTCATTTCATGGGTT
*
26636742 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGATCATTCCCAGTCGAAGATTAG
66 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGATCATTCCCAGTCGAAGATCAG
* * * * * ** * * *
26636807 ACTGGATCGAGGGTTGCGGTAGTAGGATCGATAGCACACAGGGGGAACTGGGTCAATCCTCGACT
131 ACTAGACCAAGGATTACGACAGCAGGATCGATAGCACACAGGGGGAACCGGGTCAATCCCCGACT
* * ** * *** *
26636872 TACGCATTCTGCCTCTCTGGCCGGTTGAGCGCCCGCACGTTCATTTCATGGATTGGGTTAGGAAT
196 TACGCATTCTGCCTCTCCGACCGACTGAGCGACCGCACACCCATTTCATGGATTGGCTTAGGAAT
*
26636937 ACGGGGTACATTCCATGTCTAAGCCCCAGTCAGACCGAAGGTTGTGGCAGCAGGACCGGCAGCGG
261 ACGGGGTACAATCCATGTCTAAGCCCCAGTCAGACCGAAGGTTGTGGCAGCAGGACCGGCAGCGG
26637002 GATCAGCAGCACGTAAAGGGTGATCAGGCT
326 GATCAGCAGCACGTAAAGGGTGATCAGGCT
* * ** * *
26637032 GATCCCCGACTTGCACATTATGTCTCTCC-GGCCGGCTGAGTGCCTGCACGCTCGTTTCATGGGT
1 GATCCCCGACTTACACATTATGCCTC-CCTGGCCGGCTGAACGCCCGCACGCTCATTTCATGGGT
* * *
26637096 TGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCA
65 TGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGATCATTCCCAGTCGAAGATCA
* * **
26637161 GA-TCAGACCAAGGATTACGACAGCGGGATCGATAGCACGCAGTGGGG-ACCGGGTTGATCCCCG
130 GACT-AGACCAAGGATTACGACAGCAGGATCGATAGCACACAG-GGGGAACCGGGTCAATCCCCG
* * *
26637224 GCTTACGCATTCTGCCTCTCCGACCGACTGTA-CGACCGCACACCCATTTCGTGGGTTGGCTTAG
193 ACTTACGCATTCTGCCTCTCCGACCGACTG-AGCGACCGCACACCCATTTCATGGATTGGCTTAG
* * **
26637288 GCATA-GGGAGCT-CAATCCATGTTTAAGCCCCAGTTGGACC-AAGGGTTGTGGCAGC
257 GAATACGGG-G-TACAATCCATGTCTAAGCCCCAGTCAGACCGAA-GGTTGTGGCAGC
26637343 GGGATTGGCA
Statistics
Matches: 258, Mismatches: 46, Indels: 14
0.81 0.14 0.04
Matches are distributed among these distances:
354 6 0.02
355 244 0.95
356 8 0.03
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (355 bp):
GATCCCCGACTTACACATTATGCCTCCCTGGCCGGCTGAACGCCCGCACGCTCATTTCATGGGTT
GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGATCATTCCCAGTCGAAGATCAG
ACTAGACCAAGGATTACGACAGCAGGATCGATAGCACACAGGGGGAACCGGGTCAATCCCCGACT
TACGCATTCTGCCTCTCCGACCGACTGAGCGACCGCACACCCATTTCATGGATTGGCTTAGGAAT
ACGGGGTACAATCCATGTCTAAGCCCCAGTCAGACCGAAGGTTGTGGCAGCAGGACCGGCAGCGG
GATCAGCAGCACGTAAAGGGTGATCAGGCT
Found at i:26637636 original size:26 final size:26
Alignment explanation
Indices: 26637606--26637658 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26637596 GTTGGCTTAG
* *
26637606 GCATATGAAGTTCATTC-CATGTCTAA
1 GCATACGAAGCTCATTCTCA-GTCTAA
*
26637632 GCATACGGAGCTCATTCTCAGTCTAA
1 GCATACGAAGCTCATTCTCAGTCTAA
26637658 G
1 G
26637659 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGCTCATTCTCAGTCTAA
Found at i:26638368 original size:26 final size:26
Alignment explanation
Indices: 26638339--26638391 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26638329 TTTGACTTAG
26638339 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
** *
26638365 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
26638391 G
1 G
26638392 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:26638743 original size:26 final size:26
Alignment explanation
Indices: 26638706--26638758 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26638696 GTTGACTTAG
*
26638706 GCATACGGAGTTCATGCCTAGTCTAA
1 GCATACGAAGTTCATGCCTAGTCTAA
*
26638732 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATGCCTAGTCTAA
26638758 G
1 G
26638759 ATCGAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATGCCTAGTCTAA
Found at i:26639112 original size:26 final size:26
Alignment explanation
Indices: 26639076--26639126 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26639066 TGACTTAGGT
*
26639076 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
*
26639102 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
26639127 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:26639116 original size:368 final size:366
Alignment explanation
Indices: 26638299--26639164 Score: 1047
Period size: 367 Copynumber: 2.4 Consensus size: 366
26638289 CTTCTCTGGT
* * * * * **
26638299 CGGCTGAACGCCCGCACGCTC-GTTCGTGGGTTTGACTTAGGCATACAAAGTTCATCCCCAGTCT
1 CGGCTGAGCGCCCACACGCTCATTTTGTAGG-TTGACTTAGGCATACGGAGTTCATCCCCAGTCT
* * *
26638363 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCAGGATCGA
65 AAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTCCGACAGCAGGATCGA
* * * * * *
26638428 CAGCATGCAGGGGGGACTGAGCCGATCCCTGGCTTGCACATTCTACCTCTCTGGGTGGCTGAGCT
129 CAGCACGCAGGGGGGACTGAGCCGATCCCCGACTTGCACATTCTACCTCTCCGGGTGACTGAGCA
* * * *
26638493 CCCGCACGCTCGGTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTCAGCCCCAGTC
194 CCCGCACGCTCAGTTCATGGGTTGGCTTAGGCATACGGAGTACATTACACATCTAAGCCCCAGTC
* * * **
26638558 GGACCGAGGGTTGTGGTAGCAGACCGACAGCGAGATCGACAGCACGCAGAGGGGGATTGGGCTAA
259 AGACCGAGGGTTGTGGCAGCAGACCGACAGCGAGATCGACAGCACGCAGAGGGGGACTGAACTAA
* * * * * **
26638623 TCGCTGGCTTACGCATTATGCCTCTCCGACCTGCCTTTCCGGT
324 TCCCCGGATTACGCATTATGCCTCTCCGACCGGCCTCTCCGAC
* * * * *
26638666 CGGCTGAGTGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATGCCTAGTCTA
1 CGGCTGAGCGCCCACACGCTCATTTTGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * * *
26638731 AGCATACGAAGTTCATTCCTAGTCTAAGATCGAATCGAATCGAGGGTTCCGATAGTAGGATTGGC
66 AGCATACG-AGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTCCGACAGCAGGATCGAC
* * ** * *
26638796 AGCACGTAGGGGGGA-TCGAGTCGATCCCCGACTTGTGCATTCTGCCTCTCCGGAG-GATTGAGC
130 AGCACGCAGGGGGGACT-GAGCCGATCCCCGACTTGCACATTCTACCTCTCCGG-GTGACTGAGC
* * *
26638859 ACCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTACACATCTAAGCCCCAGT
193 ACCCGCACGCTCAGTTCATGGGTTGGCTTAGGCATACGGAGTACATTACACATCTAAGCCCCAGT
* * *
26638924 CAGACCGAGGGTTGTGGCAGCAGGACCGACAGC-AGGATTGGCAGCACGTAGAGGGGGACTGAAC
258 CAGACCGAGGGTTGTGGCAGCA-GACCGACAGCGA-GATCGACAGCACGCAGAGGGGGACTGAAC
* **
26638988 TGATCCCCGGATTACGCATTATGCCTCTCCGGTCGGCCTCTCCGAC
321 TAATCCCCGGATTACGCATTATGCCTCTCCGACCGGCCTCTCCGAC
* * * *
26639034 CGGTTGAGCGCCCACACTCTCGTTTTGTAGGTTGACTTAGGTATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCACACGCTCATTTTGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * *
26639099 AGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAATTGAGGGTTGCGACAGCAGGATCGAC
66 AGCATAC-GAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTCCGACAGCAGGATCGAC
26639164 A
130 A
26639165 CGCATTCTGC
Statistics
Matches: 420, Mismatches: 72, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
366 2 0.00
367 229 0.55
368 188 0.45
369 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (366 bp):
CGGCTGAGCGCCCACACGCTCATTTTGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCATACGAGTTCATTCCCAGTCTAAGATCGGATCGAATCGAGGGTTCCGACAGCAGGATCGACA
GCACGCAGGGGGGACTGAGCCGATCCCCGACTTGCACATTCTACCTCTCCGGGTGACTGAGCACC
CGCACGCTCAGTTCATGGGTTGGCTTAGGCATACGGAGTACATTACACATCTAAGCCCCAGTCAG
ACCGAGGGTTGTGGCAGCAGACCGACAGCGAGATCGACAGCACGCAGAGGGGGACTGAACTAATC
CCCGGATTACGCATTATGCCTCTCCGACCGGCCTCTCCGAC
Found at i:26639591 original size:26 final size:26
Alignment explanation
Indices: 26639541--26639593 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26639531 GTTGGCTTAG
* *
26639541 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
26639567 GCATACGGAGCTCATTCC-TAATCTAA
1 GCATACGGAGCTCATTCCAT-ATCTAA
26639593 G
1 G
26639594 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:26640137 original size:26 final size:26
Alignment explanation
Indices: 26640101--26640155 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
26640091 GTGTTGACTC
26640101 AAGCATACGGAGTTCATCTCCAGTCT
1 AAGCATACGGAGTTCATCTCCAGTCT
* *
26640127 AAGCATACGGAGTTCATTTCTAGTCT
1 AAGCATACGGAGTTCATCTCCAGTCT
26640153 AAG
1 AAG
26640156 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
AAGCATACGGAGTTCATCTCCAGTCT
Found at i:26640488 original size:26 final size:26
Alignment explanation
Indices: 26640458--26640510 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26640448 GTTGACTCAG
* *
26640458 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
26640484 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
26640510 G
1 G
26640511 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:26640630 original size:355 final size:351
Alignment explanation
Indices: 26639862--26640826 Score: 974
Period size: 355 Copynumber: 2.7 Consensus size: 351
26639852 TGCCAGTAGC
*
26639862 CATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
1 CATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * * * *
26639927 AGTACATTTCAAGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGTAGTAGGACCAGCAGCAGGATC
66 AGTACATTCCATGTCTAAGCCCCAGC-CGATCGAGGGTTGTGGCAGCAGGACCAGCAGC-GGATC
* * * *
26639992 GACAGCACGCAGAAGGGGA-CTCGGCTGGTCCCCGGGTTACGCATTATGCCTCTCCAACTGGCCT
129 GACAGCA-GCAGAGGGGGACCT-GGCTGAT-CCCGGCTTACGTATTATGCCTCT-C--C-GG---
* * * * *
26640056 CTCCGGTCGACTGAGTGCTCGCACACTCGTTTCGTGTGTTGACTCAAGCATACGGAGTTCATCTC
184 --CC-G--G-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTCAAGCATACGGAGTTCATCCC
* * * * * * **
26640121 CAGTCTAAGCATACGGAGTTCATTTCTAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGTAG
243 CAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTACGACAGTAG
* * *
26640186 GTTCGACAAAACACAGGAAGGATCGGGTCGATCCCCAGCTTGCG
308 GATCGACAAAACACAGGAAGGACCGGGTCGATCCCCAGCTTACG
* * * *
26640230 CATTTTGCCTCTCCGG-CGGGCTGAGCGCGCACACGCTCATTTCGTGGGTTGGCTTAGGCATACG
1 CATTCTGCCTCTCCGGTC-GACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
*
26640294 GAGTACATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTCTGGCAGCAGGACCAGCAGCGGGAT
65 GAGTACATTCCATGTCTAAGCCCCAGCC-GATCGAGGGTTGTGGCAGCAGGACCAGCAGC-GGAT
26640359 CGACAGCATGCAGAGGGGGACCTGGCTGATCCTCGGCTTACGTATTATGCCTCTCCGGCCGGCTG
128 CGACAGCA-GCAGAGGGGGACCTGGCTGATCC-CGGCTTACGTATTATGCCTCTCCGGCCGGCTG
* * *
26640424 AACGCCCGCACGCTCGTTTCATGGGTTGACTCAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
191 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTCAAGCATACGGAGTTCATCCCCAGTCTAAGCATA
* ** **
26640489 CAGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTGCGACAGTAGGATCGGTAGCACA
256 CAGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTACGACAGTAGGATCGACAAAACA
* * *
26640554 CAGG-GGGAACCGGG-CTGATCCTCGGCTTACG
321 CAGGAAGG-ACCGGGTC-GATCCCCAGCTTACG
* * * * * * *
26640585 CATTCTGCCTCTCTGGTCGACTGAGTGCCCGCATGCCCCTTTCGTGGGTTGGCTTAGGTATAGGG
1 CATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * * * *
26640650 AGCT-CATTCCATGTCTAAGCCCCAGTCGAACTGAGGGTTGTGTCACCGGGACC-G--GC--A--
66 AG-TACATTCCATGTCTAAGCCCCAGCCGATC-GAGGGTTGTGGCAGCAGGACCAGCAGCGGATC
* * * * * *
26640707 G-CA-C-GTAGAGGGGGACC-GAGCCGATCCCTGGCTTGCGTATTATGCCTCTTCGGCCGGTTCA
129 GACAGCAGCAGAGGGGGACCTG-GCTGATCCC-GGCTTACGTATTATGCCTCTCCGGCCGGCTGA
* ** *
26640768 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTATCCATACGG-GTTCATTCCCAGTCTAAG
192 GCGCCCGCACGCTCGTTTCGTGGGTTGACTCAAGCATACGGAGTTCATCCCCAGTCTAAG
26640827 ATTGGATCGG
Statistics
Matches: 513, Mismatches: 73, Indels: 48
0.81 0.12 0.08
Matches are distributed among these distances:
342 19 0.04
343 83 0.16
345 1 0.00
346 2 0.00
347 1 0.00
349 1 0.00
352 2 0.00
354 7 0.01
355 225 0.44
356 3 0.01
358 1 0.00
359 2 0.00
364 2 0.00
365 1 0.00
367 4 0.01
368 157 0.31
369 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (351 bp):
CATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
AGTACATTCCATGTCTAAGCCCCAGCCGATCGAGGGTTGTGGCAGCAGGACCAGCAGCGGATCGA
CAGCAGCAGAGGGGGACCTGGCTGATCCCGGCTTACGTATTATGCCTCTCCGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTCAAGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAG
TTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTACGACAGTAGGATCGACAAAACACAGGA
AGGACCGGGTCGATCCCCAGCTTACG
Found at i:26642086 original size:26 final size:26
Alignment explanation
Indices: 26642050--26642102 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26642040 GTTGACTTAG
26642050 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
26642076 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26642102 G
1 G
26642103 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26642372 original size:368 final size:367
Alignment explanation
Indices: 26641645--26642519 Score: 997
Period size: 368 Copynumber: 2.4 Consensus size: 367
26641635 CTCTGTTCGA
* * * *
26641645 CTGAGCGCCTGCACGCTCGTTTCATGGGTTGATTTAGGCATACGGAGTTCATCCCCAGTGTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * * * *
26641710 ATGCGGAGTTCATTCCCAGTCTATGATTGGACCAGATCGAGGGTTGTGACAGCAGGATCGGCAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGTAGGATCGGCAGC
* * * * * * * * *
26641775 ACGTAGGGGGGACTGGACAGATCCCTAGCTTGCTCATTCTGCCACTCCGACTGACTGAGCGCTCG
131 ACGCAGGGGGGACTCGACAGATCCCCAACTTGCACATTCTGCCACTCCGACTGACTAAGCACCCA
* * ** * * *
26641840 CGCGCTTGTTTCGTGGGTTGGCTTAGGCATATGGAGTGCATTCCATGTCTAAGCCCAACCAGACC
196 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTATAAGCCCAACCAGACC
**
26641905 GAGGCTTATGGCAGCAAGACCGATAGCATGATCGGCAGCACGTAGAACGGGATCGGCAGCATCCC
261 GAGGCTTATGGCAGCAAGACCGATAGCATGATCGGCAGCACACAGAACGGGATCGGCAGCATCCC
**
26641970 CGACTTACGCATTATGCCTTGGCCGGTTGGCCTCTCCGGTTAG
326 CGACTTACGCATTATGCCTT-GCCGGTTGGCCTCTCCGACTAG
*
26642013 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * *
26642078 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGTAAGATTGGTAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGTAGGATCGGCAGC
* ** * *
26642143 ACGCAGGGGGGA-TCGAGCCGATCCCCAACTTGCACATTCTGCCTTTCCG-GTCGGCTAAGCACC
131 ACGCAGGGGGGACTCGA-CAGATCCCCAACTTGCACATTCTGCCACTCCGACT-GACTAAGCACC
** *
26642206 CACACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTATAAGCCCCAGTCGG
194 CACACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTATAAG-CCCAACCAG
* * * * * * * * * ** **
26642271 ATCGAGGGTTATGGTAGCAGGACTGGTAGTGA-GATCTGTAGCACACAGAGGGGGATCGGGTTG-
258 ACCGAGGCTTATGGCAGCAAGACCGATAG-CATGATCGGCAGCACACAGAACGGGATC-GGCAGC
** * *
26642334 ATCCTTGGCTTACGCATTATGCCTCT-CC-GTTCGGCCTCTCCGACTGG
321 ATCCCCGACTTACGCATTATGCCT-TGCCGGTT-GGCCTCTCCGACTAG
* * * * * *
26642381 CTGAGTGCCCGCACGCTCATTTCGTGGGTTAACATAGGCATATGGTGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * *
26642446 ATACGGAGTTCATTCACAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGACAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGTAGGATCGGCAGC
26642511 ACGCAGGGG
131 ACGCAGGGG
26642520 CTTGCACATT
Statistics
Matches: 425, Mismatches: 75, Indels: 14
0.83 0.15 0.03
Matches are distributed among these distances:
367 7 0.02
368 344 0.81
369 69 0.16
370 5 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (367 bp):
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGTAGGATCGGCAGC
ACGCAGGGGGGACTCGACAGATCCCCAACTTGCACATTCTGCCACTCCGACTGACTAAGCACCCA
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTATAAGCCCAACCAGACC
GAGGCTTATGGCAGCAAGACCGATAGCATGATCGGCAGCACACAGAACGGGATCGGCAGCATCCC
CGACTTACGCATTATGCCTTGCCGGTTGGCCTCTCCGACTAG
Found at i:26642456 original size:26 final size:26
Alignment explanation
Indices: 26642418--26642470 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26642408 GTTAACATAG
* * *
26642418 GCATATGGTGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
*
26642444 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
26642470 G
1 G
26642471 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:26642826 original size:159 final size:159
Alignment explanation
Indices: 26642625--26642917 Score: 392
Period size: 159 Copynumber: 1.8 Consensus size: 159
26642615 TCGGATCGAC
* * * *
26642625 GGTTGTGGCAACGGGACTGACAGCACGCAGAGGGGGATTGGGTTGATCCTTAACTTGCACATTAT
1 GGTTGTGGCAACAGGACTGACAGCACGCAGAGGGGGACTGGGTCGATCCTCAACTTGCACATTAT
* * * * *
26642690 GCCTCTTCG-GCTGGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTATGCATACGGAGTTC
66 ACCTCTCCGATC-GGCTCAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
26642754 ATTCCTACTCTAAGATTAGACCAGACCAAG
130 ATTCCTACTCTAAGATTAGACCAGACCAAG
* * * ** *
26642784 GGTTGTGGCAGCAGGA-TCGACAGCACTCAGGGGGGGACTGGGTCGATCCTCGGCTTGCACATTC
1 GGTTGTGGCAACAGGACT-GACAGCACGCAGAGGGGGACTGGGTCGATCCTCAACTTGCACATTA
* * *
26642848 TACCTCTCCGATCGTCTGAGCACCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
65 TACCTCTCCGATCGGCTCAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
26642913 ATTCC
130 ATTCC
26642918 ATGTGCTAGT
Statistics
Matches: 114, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
158 1 0.01
159 112 0.98
160 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (159 bp):
GGTTGTGGCAACAGGACTGACAGCACGCAGAGGGGGACTGGGTCGATCCTCAACTTGCACATTAT
ACCTCTCCGATCGGCTCAGCACCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCTACTCTAAGATTAGACCAGACCAAG
Found at i:26643496 original size:26 final size:26
Alignment explanation
Indices: 26643467--26643519 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26643457 GTTGACTTAG
*
26643467 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGAAGTTCACT-CCCAGTCTAA
*
26643493 GCATACGAAGTTTACTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
26643519 G
1 G
26643520 ATCGGGTCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:26644221 original size:158 final size:157
Alignment explanation
Indices: 26643802--26644263 Score: 428
Period size: 158 Copynumber: 2.9 Consensus size: 157
26643792 GACCGATTGA
* * * *
26643802 GGTTGCTGCAGCAGCATCGGCAGCACGTAGGGGGGACCAGGTCGATCCTCGACTTGCGCATTCTG
1 GGTTG-TGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTG
* * * * *
26643867 CCTCTCCGACCGGTTGAGTGCCCCACACGCCCGTTTCGTGAGTTGGCTTAGGCATAGGGAGCTCA
65 CCTCTCCGGCCGGCTGAG-CCCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCA
* * * *
26643932 TTCCATGTCTAAGCCCCAGTCAGATTGAG
129 TTCCATATCTAAGCACCAGCCAGATCGAG
* * * * * * * * * *
26643961 AGTTATGGCAGCGGGA-CCAGCAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGTGCATTA
1 GGTTGT-GCAGCAGGATCGA-CAGCACGTAG-GGGGGACCGGGTCGATCCTCGGCTTGCGCATTC
* * * * * * * * * *
26644025 TGCCTCTTCGGCCAGCTTAGCGCTCACATGCTCATTTCGTGGGTTGACTTATGCATATGGA-CTT
63 TGCCTCTCCGGCCGGCTGAGCCCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGC-T
* * *
26644089 GATTCC-TAATCTAAG-ATCAGACCTGATCGAG
127 CATTCCAT-ATCTAAGCACCAG-CCAGATCGAG
*
26644120 GGTTGTGACAGCAGGATCGACAGCACATAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTG
1 GGTTGTG-CAGCAGGATCGACAGCACGTAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTG
* ** * *
26644185 CCTCTCCGGTCGGCTGAGCCCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
65 CCTCTCCGGCCGGCTGAGCCCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCAT
*
26644250 TCCATGTCTAAGCA
130 TCCATATCTAAGCA
26644264 TACGGAGCTC
Statistics
Matches: 229, Mismatches: 63, Indels: 22
0.73 0.20 0.07
Matches are distributed among these distances:
158 96 0.42
159 90 0.39
160 43 0.19
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
GGTTGTGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGC
CTCTCCGGCCGGCTGAGCCCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATT
CCATATCTAAGCACCAGCCAGATCGAG
Found at i:26644285 original size:26 final size:26
Alignment explanation
Indices: 26644235--26644287 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26644225 GTTGGCTTAG
* *
26644235 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
26644261 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
26644287 G
1 G
26644288 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:26644989 original size:26 final size:27
Alignment explanation
Indices: 26644960--26645011 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
26644950 TTGACTTAGG
26644960 ATACGG-AGTTCATCCCCAGTCTAAGC
1 ATACGGAAGTTCATCCCCAGTCTAAGC
*
26644986 ATACGGAAGTTCATTCCCAGTCTAAG
1 ATACGGAAGTTCATCCCCAGTCTAAG
26645012 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (27 bp):
ATACGGAAGTTCATCCCCAGTCTAAGC
Found at i:26645599 original size:355 final size:351
Alignment explanation
Indices: 26644923--26645919 Score: 1130
Period size: 355 Copynumber: 2.8 Consensus size: 351
26644913 TCTGGTCGAC
* ** *
26644923 TGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGG-ATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
* *
26644987 TACGGAAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGG-T-TACAGCAGTAAGATCGATA
66 TACGG-AGTTCATTCCCAGTCTAAGATC-GACTAGATCGAGGGTTGTACAGCAG---GATCGACA
* * * * * * * *
26645050 GCA-CACAGGGGGGCCGAACCGAT-CCTCGACTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
126 GAAGTA-AGGGGGACCGAGCCGATCCCT-GGCTTGCG-ATTCTGCCTCTCCGATCGGCTAAGCGC
* * * *
26645113 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGCAGTACATTCCATGTCTAAGCCCCAGTCG
188 CCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCG
* * * * *** *
26645178 GACCGAGGGTTGTGTCAGCGGGACCGGCAGTGGGATCGACAGCATGCAGAGGGAGACCGAGCTGA
253 GATCGAGGGTTGTGGCATCAGGACCGGCAGCAAGATCGACAACATGCAGAGGGAGACCGAGCTGA
* *
26645243 TCCTCGACTTACGTATTATGCCTCTCCGATCGGT
318 TCCCCGACTTACGCATTATGCCTCTCCGATCGGT
* * * * * *
26645277 TGAGCACCCGTACACTCGTTTCGTGAGTTGACTTAGGCATACATAGTTCATCCCCAGTCAAAGCT
1 TGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
* *
26645342 TACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGACAGCAGGATCGACAAAA
66 TACGGAGTTCATTCCCAGTCTAAGATC-GACTAGATCGAGGGTTGT-ACAGCAGGATCGACAGAA
* * * *
26645407 TGTAAGGGGGACCGAGCTGATCCCTGGCTTGCGTTCTCTGCCTCTCCGATCGACTAAGCGCCTGC
129 -GTAAGGGGGACCGAGCCGATCCCTGGCTTGCGAT-TCTGCCTCTCCGATCGGCTAAGCGCCCGC
* * *
26645472 ACTCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGGATC
192 ACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGATC
* * *
26645537 GAGGGTTGTGGCATCAGGACTGGCAGCAAGATTGACAACATGCAGAGGGGGACC-AGGCTGATCC
257 GAGGGTTGTGGCATCAGGACCGGCAGCAAGATCGACAACATGCAGAGGGAGACCGA-GCTGATCC
* *
26645601 CCGACTTACGCATTATGTCTCTCCGGTCGGT
321 CCGACTTACGCATTATGCCTCTCCGATCGGT
* * * *
26645632 TGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATA-AGGAGTTCATCCCTAGTCTAAGC
1 TGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACA-GAGTTCATCCCCAGTCTAAGC
* * * * *
26645696 ATACGAAGTTCATTCCCAGTCTAAGATCGAACTAGATCAAGGGTTGCAGTAGCAAGATCGACAGG
65 ATACGGAGTTCATTCCCAGTCTAAGATCG-ACTAGATCGAGGGTTGTA-CAGCAGGATCGACA-G
* * * ** *
26645761 ACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGATCGGCTAAGCGCCCG
127 AAGTAAGGGGGACCGAGCCGATCCCTGGCTTGC-GATTCTGCCTCTCCGATCGGCTAAGCGCCCG
* * * * *
26645826 TACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTTTAAGCCCCAGTCGGT
191 CACACTCATTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAGTCGGA
*
26645890 TTGAGGGTTGTGGCAGT-AGGACCGGCAGCA
255 TCGAGGGTTGTGGCA-TCAGGACCGGCAGCA
26645920 CACAGAGGGG
Statistics
Matches: 542, Mismatches: 85, Indels: 31
0.82 0.13 0.05
Matches are distributed among these distances:
354 78 0.14
355 448 0.83
356 9 0.02
357 7 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (351 bp):
TGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCGACTAGATCGAGGGTTGTACAGCAGGATCGACAGAAGT
AAGGGGGACCGAGCCGATCCCTGGCTTGCGATTCTGCCTCTCCGATCGGCTAAGCGCCCGCACAC
TCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGATCGAGG
GTTGTGGCATCAGGACCGGCAGCAAGATCGACAACATGCAGAGGGAGACCGAGCTGATCCCCGAC
TTACGCATTATGCCTCTCCGATCGGT
Found at i:26645698 original size:26 final size:26
Alignment explanation
Indices: 26645668--26645720 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26645658 GTTGACTTAG
*
26645668 GCATAAGGAGTTCA-TCCCTAGTCTAA
1 GCATAAGAAGTTCATTCCC-AGTCTAA
*
26645694 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
26645720 G
1 G
26645721 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:26646159 original size:158 final size:158
Alignment explanation
Indices: 26645761--26646197 Score: 495
Period size: 159 Copynumber: 2.8 Consensus size: 158
26645751 GATCGACAGG
* *
26645761 ACGTAGGGGGGACCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGATCGGCTAAGCGCCCG
1 ACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTAAGCGCCCG
* * * * * * * * * * * **
26645826 TACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTTTAAGCCCCAGTCGGTT
66 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGAC
*
26645891 TGAGGGTTGTGGCAGTAGGACCGGCAGC
131 CGAGGGTTGTGGCAGTAGGACCGGCAGC
** * * * * * * *
26645919 ACACAGAGGGGGACCGGGCCAATCCCTGGCTTGCACATTATGCCTCTTC-AGCCAGCTCAGTGCC
1 ACGTAG-GGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGA-CCGGCTAAGCGCC
* * *
26645983 CGCACGCTCGTTTAATGGGTTGACTTATGCATACGGAGTTCATTCCCAT-TCTAAG-ATCAGACC
64 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CC
* *
26646046 GGACCGAGGGTTGTGGCAGTAGGATCGGTAGC
127 GGACCGAGGGTTGTGGCAGTAGGACCGGCAGC
* * * *
26646078 ACGTAGGGGGGACTGGGTCGATCCCCGGCTTGCTCATTCTGCCTCTCCGACCGGCTGAGCGCCCG
1 ACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTAAGCGCCCG
26646143 CACGCTCGTTTCATGGGTT-AGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 CACGCTCGTTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
26646198 TACGGAGCTC
Statistics
Matches: 227, Mismatches: 44, Indels: 15
0.79 0.15 0.05
Matches are distributed among these distances:
157 5 0.02
158 99 0.44
159 119 0.52
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
ACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTAAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGAC
CGAGGGTTGTGGCAGTAGGACCGGCAGC
Found at i:26646219 original size:26 final size:26
Alignment explanation
Indices: 26646169--26646221 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26646159 GTTAGCTTAG
* *
26646169 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
26646195 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
26646221 G
1 G
26646222 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:26647667 original size:26 final size:26
Alignment explanation
Indices: 26647637--26647689 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26647627 GTTGACTTAG
*
26647637 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
26647663 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
26647689 G
1 G
26647690 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:26648896 original size:26 final size:26
Alignment explanation
Indices: 26648857--26648909 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26648847 GTTGACTTAG
*
26648857 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
*
26648883 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
26648909 G
1 G
26648910 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:26649248 original size:26 final size:26
Alignment explanation
Indices: 26649212--26649264 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26649202 GTTGACTTAG
26649212 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
26649238 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26649264 G
1 G
26649265 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26649584 original size:344 final size:344
Alignment explanation
Indices: 26648785--26649664 Score: 1020
Period size: 344 Copynumber: 2.5 Consensus size: 344
26648775 CCACCCGTTC
* ** * ** *
26648785 GATCCCCGGCTTGCGCATCCTGCCTCTCTAGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTACGCATTATGCCTCTCCAACCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTT
*
26648850 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCGG
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
** *
26648915 ACCGGATCGAGGGTTGCGGTAGCAAGATTGGCAGCACGCAGGGGGCACCGGGTCGATCCCCGGCT
131 ACCGGATCGAGGGTTGCGACAGCAGGATTGGCAGCACGCA----G-A--GGG--GAT--CCGGCT
* *
26648980 TGCGCATTCTGCCTCTCTGGCTGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCAT
185 TGCGCATTCTGCCTCTCCGGCTGGCTAAGTGCCCGCACGATCGTTTCGTGGGTTAGCTTAGGCAT
* * * * ** * *
26649045 ACGGAGTAGATTCTACATCTAAGCCCCAGCCAGATCGAGGGTTGTGGCAGTAGCACTAGAAGTGG
250 ACGGAGTACATTCCACATCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAACAGCACCAGAAGCGG
* * * * *
26649110 GATCGACAGCACGTAGAGGTGGACCGAGCT
315 GATAGACAGCACGCAAAGGGGGACAGAGCT
* * * * * * *
26649140 GATCCTCAGCTTGA-GCATTATGCCTCTCCGACCGGCTGAGCTCCTGCACGATCATTTCGTGGGT
1 GATCCCCGGCTT-ACGCATTATGCCTCTCCAACCGACTGAGCGCCTGCACGCTCGTTTCGTGGGT
*
26649204 TGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
65 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
26649269 GACCGGATCGCGAGTTGCGACAGCAGGATTGGCAGCACGCAGAGGGGAT-CGGAC-TGAACGTAT
130 GACCGGATCGAGGGTTGCGACAGCAGGATTGGCAGCACGCAGAGGGGATCCGG-CTTG--CGCAT
* * * * *
26649332 TTTGCCTCTCCGGCTGGTTGAGTGCCCGCACGATCGTTTCGTTGGTTGGCTTAGGCATACGGAGT
192 TCTGCCTCTCCGGCTGGCTAAGTGCCCGCACGATCGTTTCGTGGGTTAGCTTAGGCATACGGAGT
* * * * * *
26649397 ACATTCCA-AGTCTAAGCCCTAGCCGGACCAAGGG-TGTGGTAACAGGACCGGCAGCGGGATTAG
257 ACATTCCACA-TCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAACAGCACCAGAAGCGGGA-TAG
*
26649460 -TAGCACGCAAAGGGGGATCAG-GCT
320 ACAGCACGCAAAGGGGGA-CAGAGCT
* *
26649484 GATCCCCGGATTACGCATTATGCCTCTCCAACCGACTGAGCGCCTGCACGCTCGTTTCATGGGTT
1 GATCCCCGGCTTACGCATTATGCCTCTCCAACCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTT
* * *
26649549 AACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGG
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
26649614 ACCAGATCAAGGGTTGCGACAGCAGGATCGGCAGCATGCAGAGGGGA-CCGG
131 ACCGGATCGAGGGTTGCGACAGCAGGATTGGCAGCACGCAGAGGGGATCCGG
26649665 GTCGATCTCC
Statistics
Matches: 448, Mismatches: 68, Indels: 29
0.82 0.12 0.05
Matches are distributed among these distances:
343 6 0.01
344 194 0.43
345 92 0.21
346 3 0.01
348 3 0.01
350 1 0.00
351 1 0.00
355 148 0.33
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (344 bp):
GATCCCCGGCTTACGCATTATGCCTCTCCAACCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
ACCGGATCGAGGGTTGCGACAGCAGGATTGGCAGCACGCAGAGGGGATCCGGCTTGCGCATTCTG
CCTCTCCGGCTGGCTAAGTGCCCGCACGATCGTTTCGTGGGTTAGCTTAGGCATACGGAGTACAT
TCCACATCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAACAGCACCAGAAGCGGGATAGACAGCA
CGCAAAGGGGGACAGAGCT
Found at i:26649586 original size:26 final size:26
Alignment explanation
Indices: 26649556--26649608 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26649546 GTTAACTTAG
26649556 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
26649582 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26649608 G
1 G
26649609 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26650999 original size:26 final size:26
Alignment explanation
Indices: 26650950--26651002 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26650940 GTTGACTTAG
26650950 GCATACGGAGTGCATCCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
* * * *
26650976 GCATACGGATTTCATTCCCGGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
26651002 G
1 G
26651003 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTGCATCCCCAGTCTAA
Found at i:26653690 original size:26 final size:26
Alignment explanation
Indices: 26653653--26653705 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26653643 GTTGACTTAG
*
26653653 GCATACGAAGTTCATCCCCAGTGTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
26653679 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26653705 G
1 G
26653706 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26655283 original size:26 final size:26
Alignment explanation
Indices: 26655232--26655284 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26655222 GTTGACTTAG
* *
26655232 GCATACGTAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGACTAA
* *
26655258 GCATACGGAGTTCATTCCTAGACTAA
1 GCATACGGAGTTCATCCCCAGACTAA
26655284 G
1 G
26655285 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGACTAA
Found at i:26655484 original size:355 final size:355
Alignment explanation
Indices: 26654851--26655541 Score: 942
Period size: 355 Copynumber: 1.9 Consensus size: 355
26654841 TGAGCACCCG
* * *
26654851 CATGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTCCATCCCTAGTCTAAGCAAACGGAGTTT
1 CATGCTCATTTCATGGGTTGACTTAGGCATACAGAGTCCATCCCCAGTCTAAGCAAACGGAGTTC
* * * * *
26654916 ATTCCCAGTCTAAGATCAGATCGGATCTAGGGTTGCGACAGCAAGATCGACAGCATGCAGGGGGT
66 ATTCCCAGACTAAGATCAGACCGAATCAAGGGTTGCGACAGCAAGATCGACAGCACGCAGGGGGT
* * ** * *
26654981 ATCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCATCCGCACGCTCGTTT
131 ACCAGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGGTCGACTGAGCACCCGCACGCTCGTTT
* * * *
26655046 CATGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGTCGGATCGAGGGTTGTG
196 CATGGGTTGGCTTAGGCATACAAAGTACATTCCACGTCTAAGCCCCAGTCAGACCGAGGGTTATG
* * * * * *
26655111 GCAGCCGGACCGATAGCGGGATCGACAGCACGCAGAGGGGGATCGGGCTGAT-CTCGAGCTTGCG
261 GCAGCAGGACCAATAGCGGGATCGACAGCACGCAGAAGGGGACCGGGCTGATCCCCG-GCTTGCA
26655175 CATTATGCCTCTTCAGCCGGCTGAGCGCCTA
325 CATTATGCCTCTTCAGCCGGCTGAGCGCCTA
* *
26655206 CATGCTCATTTCATGGGTTGACTTAGGCATAC-GTAGTTCATCCCCAGTCTAAGCATACGGAGTT
1 CATGCTCATTTCATGGGTTGACTTAGGCATACAG-AGTCCATCCCCAGTCTAAGCAAACGGAGTT
* * * * *
26655270 CATTCCTAGACTAAGATCAGACCGAATCAAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGGG
65 CATTCCCAGACTAAGATCAGACCGAATCAAGGGTTGCGACAGCAAGATCGACAGCACGCAG-GGG
* * * **
26655335 G-ACC-GATTCGATCCCTAGCTTACGCATTCTACCTCTCCGG-CAGGCTGAGTGCCCGCACGCTC
129 GTACCAG-GTCGATCCCCAGCTTACGCATTCTACCTCTCCGGTC-GACTGAGCACCCGCACGCTC
* *
26655397 GTTTCATGGGTTGGCTTAGGCATACAAAGTACATTCCATGTCTAAGCCCCAGTTAGACCGAGGGT
192 GTTTCATGGGTTGGCTTAGGCATACAAAGTACATTCCACGTCTAAGCCCCAGTCAGACCGAGGGT
* *
26655462 TATGGCATCAGGACCAATAGCGGGATCGACAGCACGTAGAAGGGGACCGGGCTGATCCCCGGCTT
257 TATGGCAGCAGGACCAATAGCGGGATCGACAGCACGCAGAAGGGGACCGGGCTGATCCCCGGCTT
26655527 GCACATTATGCCTCT
322 GCACATTATGCCTCT
26655542 CCATCCGACC
Statistics
Matches: 291, Mismatches: 40, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
354 3 0.01
355 281 0.97
356 7 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (355 bp):
CATGCTCATTTCATGGGTTGACTTAGGCATACAGAGTCCATCCCCAGTCTAAGCAAACGGAGTTC
ATTCCCAGACTAAGATCAGACCGAATCAAGGGTTGCGACAGCAAGATCGACAGCACGCAGGGGGT
ACCAGGTCGATCCCCAGCTTACGCATTCTACCTCTCCGGTCGACTGAGCACCCGCACGCTCGTTT
CATGGGTTGGCTTAGGCATACAAAGTACATTCCACGTCTAAGCCCCAGTCAGACCGAGGGTTATG
GCAGCAGGACCAATAGCGGGATCGACAGCACGCAGAAGGGGACCGGGCTGATCCCCGGCTTGCAC
ATTATGCCTCTTCAGCCGGCTGAGCGCCTA
Found at i:26656290 original size:26 final size:26
Alignment explanation
Indices: 26656254--26656303 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
26656244 GATTTAGGCA
*
26656254 TACGTAGTTCATCCCCAGTCTAAGTG
1 TACGGAGTTCATCCCCAGTCTAAGTG
* *
26656280 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
26656304 ATCAGACCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGTG
Found at i:26657872 original size:26 final size:26
Alignment explanation
Indices: 26657836--26657888 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26657826 GTTGACTTAG
26657836 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26657862 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26657888 G
1 G
26657889 ATTGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26658360 original size:158 final size:157
Alignment explanation
Indices: 26657929--26658364 Score: 459
Period size: 158 Copynumber: 2.8 Consensus size: 157
26657919 GATCGATAGC
* * *
26657929 ACGCAGGGGGGACCGGATCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCACCCG
1 ACGCAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCACCCG
* * * * * *
26657994 CACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAATCGGAC
66 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAATCGGAC
** *** *
26658059 GAAGGTTGTGGCAGTGGGACCGACAGA
131 GAAGGTTGCAGCAACAGGACCAACAGA
** * ** * * * **
26658086 ACGCAGAGGGGGACCAAGCCGATCTTCGGCTTGTGCATTATGCCTCTTC-GACTGGCCCAGCACC
1 ACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTC-GGCTGAGCACC
* * * *
26658150 CGCACGCTTGTTTCATGGGTTGACTTACGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGA-C
64 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCA-ATC
*
26658212 TGGACCGAAGGTTGCAGCAACAGGATCAACA-A
127 -GGA-CGAAGGTTGCAGCAACAGGACCAACAGA
* * * *
26658244 CATGCAGGGGGGACCGGGTTGATCCCCGGCTTGTGAATTCTGCCTCTCCGGTCGGCTGAGCGCCC
1 -ACGCAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCACCC
*
26658309 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAGCA
65 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
26658365 TACGGAGCTC
Statistics
Matches: 221, Mismatches: 48, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 13 0.06
158 178 0.81
159 30 0.14
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (157 bp):
ACGCAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCACCCG
CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAATCGGAC
GAAGGTTGCAGCAACAGGACCAACAGA
Found at i:26659927 original size:158 final size:157
Alignment explanation
Indices: 26659534--26659951 Score: 385
Period size: 159 Copynumber: 2.6 Consensus size: 157
26659524 GTCCCGGACA
* * * * **
26659534 GATCCCCAGCTTGCGTATTCTACGTCTCCGGTCGGCTGAGTGCCCGTACGCCCGTTTCATGGGTT
1 GATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGTTCGTTTCAT-GGTT
* * ** * * ***
26659599 GGCTTAGGCATAGGGAGCTCATTTCGTGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAACAGG
65 GGCTTAGGCATACGGAGTTCA-TTCCAGTCTAAGCACCAACCGGACCGAAGGTTACAGCAACAGG
* * *
26659664 ATCGGCAGCACATAGAGGGGGACCGTGTC
129 ATCAGCAGCACATAGAGAGGGACCGGGTC
* * * * * ** *
26659693 GATCCTCGGCTTGCGCATTATGCCTCTTCGG-CTGGCTCAGCGCCCACACGCTT-GTTTCATGTC
1 GATCCCCAGCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGCGCCCGTACG-TTCGTTTCATG-G
** * * * * *
26659756 TTAACTTATGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGGCTGAAGGTTACAGCAAT
63 TTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGCACCA-ACCGGACCGAAGGTTACAGCAAC
*
26659820 AGGATCAGCAGCACATAG-GAGGGATCGGGTC
126 AGGATCAGCAGCACATAGAGAGGGACCGGGTC
* * *
26659851 GATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCGCTCGTATGTTCGTTTCATCGGTT
1 GATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGTTCGTTTCAT-GGTT
*
26659916 GGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
65 GGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCA
26659952 TACGAAGCTC
Statistics
Matches: 200, Mismatches: 49, Indels: 20
0.74 0.18 0.07
Matches are distributed among these distances:
157 5 0.03
158 89 0.44
159 106 0.53
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.26
Consensus pattern (157 bp):
GATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGTTCGTTTCATGGTTG
GCTTAGGCATACGGAGTTCATTCCAGTCTAAGCACCAACCGGACCGAAGGTTACAGCAACAGGAT
CAGCAGCACATAGAGAGGGACCGGGTC
Found at i:26660691 original size:26 final size:26
Alignment explanation
Indices: 26660654--26660706 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26660644 GTTGACTTAG
26660654 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
26660680 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
26660706 G
1 G
26660707 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26661056 original size:26 final size:26
Alignment explanation
Indices: 26661020--26661070 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
26661010 GTTGACTTAG
26661020 GCATACGAAGTTCA-TCACCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
26661046 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
26661071 GGATGGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:26661323 original size:366 final size:359
Alignment explanation
Indices: 26660601--26661612 Score: 1057
Period size: 366 Copynumber: 2.8 Consensus size: 359
26660591 CTTGCACATC
*
26660601 CTGCCTCTCTAGTCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTT
1 CTGCCTCTCTAGTTGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTT
* * * *
26660666 CATCCCCAGTCTAAGCATAC-AGAGTTCATTCCTAGTCTAAGATCAGATCGGATCTAGGGTTACG
66 CATCCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACG
** * * * *
26660730 GTAGTAGGATCGATAGTACGTAAAGGGGACCGAGCC-AGTCCCCGACTTGCGCATTCTACCTCTC
130 ACAGTAGGATCGATAGCACGTAAGGGGGATCGAGCCGA-TCCCCGACTTGCGCATTCTGCCTCTC
* * * * * *
26660794 CGGCCGGTAAGCGCCCGCACGCTCTTTTCGTGGGTTGGCTTAGGTATACGGAGTACGTTCCATGT
194 CGGCCGCTGAGCGCCCGCACGCTCTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * * * * * *
26660859 CTAATCCCCAGCCAGATTGAGGGTTATGACAGCAGGACCGGTAACGGGATCGATAGCACGCAGAG
259 CTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCAGGACCGGCAACGAGATCGATAGCACACAAAG
* *
26660924 GGAGACCAGGTTCATCCCCGATTGTGTATTATGCGTCTT
324 GGAGACCAGGCTCATCCCCGATTGTGCATTATGC--C-T
* *
26660963 CGGTTGGCCTCTCTAGTTGGCTGAGCACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGA
1 C---T-GCCTCTCTAGTTGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
* * *
26661028 AGTTCATCACCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAGGATGGGACCGGATCGAGGGTT
62 AGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTT
* ** *
26661093 GCGACAACAGGATCGATAGCACGT-AGGGGGATCGAGCCGATCCCCAAC-TGCGCATTCTGCCTC
127 ACGACAGTAGGATCGATAGCACGTAAGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTC
*
26661156 TCCGGCCAGCTGAGCGCCCGTACGCTCTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
192 TCCGGCC-GCTGAGCGCCCGCACGCTCTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
* * ** * * * * ** * *
26661221 CGTCTAAGCCCCAACCAGACCAAGGGTTGTGGTAGCATGTCTGGCAGTGAGATCGATGGTACACA
256 TGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGCAGGACCGGCAACGAGATCGATAGCACACA
* * * *
26661286 AAGGGGGATC-GAGCTGATCCCCGGCTTGCT-CATTATGCCT
321 AAGGGAGACCAG-GCTCATCCCC-GATTG-TGCATTATGCCT
* * * * * *
26661326 CT-CCGAC-C-AGTT---T-AGCGCCCGCACGTTCATTTCGTGGGTTGAATTAGGCATACGGAGT
1 CTGCC-TCTCTAGTTGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGT
* *
26661384 TCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACA
65 TCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACG
* * * * * ** *
26661449 ACAGTAGGATCGATAACAC-TCAGGGGGGATCGAGCTGATCCCTGGCTTATGCATTCTGCCTCTT
130 ACAGTAGGATCGATAGCACGT-AAGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTC
* * * * * *
26661513 CGACTGACTGAGTC-CCCGCAC-ATCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCA
194 CGGCCG-CTGAG-CGCCCGCACGCT-CTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
*
26661576 TTGTCTAAGCCCCAGCCGGACTGAGGGTTGTGGCAGC
256 -TGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGC
26661613 GGGATCGGTA
Statistics
Matches: 541, Mismatches: 91, Indels: 42
0.80 0.14 0.06
Matches are distributed among these distances:
352 1 0.00
353 113 0.21
354 22 0.04
355 64 0.12
356 31 0.06
357 4 0.01
358 3 0.01
359 1 0.00
360 1 0.00
362 1 0.00
363 2 0.00
364 23 0.04
365 131 0.24
366 142 0.26
367 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (359 bp):
CTGCCTCTCTAGTTGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTT
CATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGA
CAGTAGGATCGATAGCACGTAAGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCG
GCCGCTGAGCGCCCGCACGCTCTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCCCCAGCCAGACTGAGGGTTGTGGCAGCAGGACCGGCAACGAGATCGATAGCACACAAAGGG
AGACCAGGCTCATCCCCGATTGTGCATTATGCCT
Found at i:26661409 original size:26 final size:26
Alignment explanation
Indices: 26661373--26661425 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26661363 GTTGAATTAG
26661373 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26661399 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26661425 G
1 G
26661426 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26661413 original size:353 final size:360
Alignment explanation
Indices: 26660618--26661612 Score: 1041
Period size: 365 Copynumber: 2.8 Consensus size: 360
26660608 TCTAGTCGGC
26660618 TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
* * * * * ** *
26660683 TACAGAGTTCATTCCTAGTCTAAGATCAGATCGGATCTAGGGTTACGGTAGTAGGATCGATAGTA
66 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGACAGTAGGATCGATAGCA
* * * * *
26660748 CGTAAAGGGGACCGAGCC-AGTCCCCGACTTGCGCATTCTACCTCTCCGGCCGGTAAGCGCCCGC
131 CGTAAGGGGGATCGAGCCGA-TCCCCGACTTGCGCATTCTGCCTCTCCGGCCGCTGAGCGCCCGC
* * * * * *
26660812 ACGCTCTTTTCGTGGGTTGGCTTAGGTATACGGAGTACGTTCCATGTCTAATCCCCAGCCAGATT
195 ACGCTCTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACT
* * * * * * *
26660877 GAGGGTTATGACAGCAGGACCGGTAACGGGATCGATAGCACGCAGAGGGAGACCAGGTTCATCCC
260 GAGGGTTGTGGCAGCAGGACCGGCAACGAGATCGATAGCACACAAAGGGAGACCAGGCTCATCCC
* *
26660942 CGATTGTGTATTATGCGTCTTCGGTTGGCCTCTCTAGTTGG
325 CGATTGTGCATTATGCG-CTTC-G-T-GCCACTCTAGTT-G
* * *
26660983 CTGAGCACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCACCAGTCTAAGC
1 -TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
* * * * **
26661048 ATACGAAGTTCATTCCCAGTCTAGGATGGGACCGGATCGAGGGTTGCGACAACAGGATCGATAGC
65 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGACAGTAGGATCGATAGC
*
26661113 ACGT-AGGGGGATCGAGCCGATCCCCAAC-TGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCG
130 ACGTAAGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCC-GCTGAGCGCCCG
* * *
26661176 TACGCTCTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCCCCAACCAGAC
194 CACGCTCTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAC
** * * * * ** * * * * *
26661241 CAAGGGTTGTGGTAGCATGTCTGGCAGTGAGATCGATGGTACACAAAGGGGGATC-GAGCTGATC
259 TGAGGGTTGTGGCAGCAGGACCGGCAACGAGATCGATAGCACACAAAGGGAGACCAG-GCTCATC
*
26661305 CCCGGCTTGCT-CATTATGC-C-TC-T-CCGAC-C-AGTT-
323 CCC-GATTG-TGCATTATGCGCTTCGTGCC-ACTCTAGTTG
* * * * *
26661338 T-AGCGCCCGCACGTTCATTTCGTGGGTTGAATTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
* *
26661402 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACAACAGTAGGATCGATAACA
66 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGACAGTAGGATCGATAGCA
* * * * ** * * *
26661467 C-TCAGGGGGGATCGAGCTGATCCCTGGCTTATGCATTCTGCCTCTTCGACTGACTGAGTC-CCC
131 CGT-AAGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCG-CTGAG-CGCCC
* * * * *
26661530 GCAC-ATCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATTGTCTAAGCCCCAGCCG
193 GCACGCT-CTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-TGTCTAAGCCCCAGCCA
26661594 GACTGAGGGTTGTGGCAGC
256 GACTGAGGGTTGTGGCAGC
26661613 GGGATCGGTA
Statistics
Matches: 524, Mismatches: 92, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
352 1 0.00
353 113 0.22
354 22 0.04
355 64 0.12
356 31 0.06
357 4 0.01
358 3 0.01
359 1 0.00
360 1 0.00
363 2 0.00
364 23 0.04
365 130 0.25
366 128 0.24
367 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (360 bp):
TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGACAGTAGGATCGATAGCA
CGTAAGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGCTGAGCGCCCGCA
CGCTCTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTG
AGGGTTGTGGCAGCAGGACCGGCAACGAGATCGATAGCACACAAAGGGAGACCAGGCTCATCCCC
GATTGTGCATTATGCGCTTCGTGCCACTCTAGTTG
Found at i:26661741 original size:344 final size:347
Alignment explanation
Indices: 26660620--26661743 Score: 832
Period size: 366 Copynumber: 3.2 Consensus size: 347
26660610 TAGTCGGCTG
* * * *
26660620 AGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATA
1 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * * *** ** **
26660685 C-AGAGTTCATTCCTAGTCTAAGATCAGATCGGATCTAGGGTTACGGTAGTAGGATCGATAGTAC
66 CGA-AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACAACAACAGGATCGATAACAC
* * * * * * * *
26660749 GTAAAGGGGACCGAGCC-AGTCCCCGACTTGCGCATTCTACCTCTCCGGCC-GGTAAGCGCCCGC
130 GT-AGGGGGATCGAGCCGA-TCCCCAAC-TACGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGC
* * * * * * * *
26660812 ACGCTCTTTTCGTGGGTTGGCTTAGGTATACGGAG-TACGTTCCATGTCTAATCCCCAGCCAGAT
192 ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGCT-CATTCCACGTCTAAGCCCCAACCAGAC
** * * * * * * * * * *
26660876 TGAGGGTTATGACAGCAGGACCGGTAACGGGATCGATAGCACGCAGAGGGAGACC-AGGTTCATC
256 CAAGGGTTGTG-GAGCATG--CAGT---GAGATCGATAGCACACAAAGGGGGACCGA-GCTGATC
* * * *
26660940 CCC-GATTG-TGTATTATGCGTCTTCGGTTGGCC-TCTCTAGTTGGCTG
314 CCCGGCTTGCT-CATTATGC--C-TC---T--CCGAC-C-A----GCTC
* * * * *
26660986 AGCACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCA-TCACCAGTCTAAGCAT
1 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CCAGTCTAAGCAT
* * * * *
26661050 ACGAAGTTCATTCCCAGTCTAGGATGGGACCGGATCGAGGGTTGCGACAACAGGATCGATAGCAC
65 ACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACAACAACAGGATCGATAACAC
* * *
26661115 GTAGGGGGATCGAGCCGATCCCCAACTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGTACG
130 GTAGGGGGATCGAGCCGATCCCCAACTACGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACG
* *
26661180 CTCTTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCCCCAACCAGACCAAG
195 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGCTCATTCCACGTCTAAGCCCCAACCAGACCAAG
* * *
26661245 GGTTGTGGTAGCATGTCTGGCAGTGAGATCGATGGTACACAAAGGGGGATCGAGCTGATCCCCGG
260 GGTTGTGG-AGCA----T-GCAGTGAGATCGATAGCACACAAAGGGGGACCGAGCTGATCCCCGG
* *
26661310 CTTGCTCATTATGCCTCTCCGACCAGTTT
319 CTTGCTCATTATGCCTCTCCGACCAGCTC
* * *
26661339 AGCGCCCGCACGTTCATTTCGTGGGTTGAATTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
1 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* **
26661404 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACAACAGTAGGATCGATAACAC-
66 CGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACAACAACAGGATCGATAACACG
* *** * * *
26661468 TCAGGGGGGATCGAGCTGATCCCTGGCTTATGCATTCTGCCTCTTCGA-CTGACTGAGTC-CCCG
131 T-A-GGGGGATCGAGCCGATCCCCAAC-TACGCATTCTGCCTCTCCGACCAG-CTGAG-CGCCCG
* * * * *
26661531 CAC-ATCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATTGTCTAAGCCCCAGCCGG
191 CACGCT-CGTTTCATGGGTTGGCTTAGGCATACGGAGCTCATTCCA-CGTCTAAGCCCCAACCAG
** * * * * * *
26661595 ACTGAGGGTTGT-G-GCA-GC-G-G-GATCGGTAGCGCGCAAGGGGGGACCG-GGTCGATCCTCG
254 ACCAAGGGTTGTGGAGCATGCAGTGAGATCGATAGCACACAAAGGGGGACCGAGCT-GATCCCCG
* * * *
26661653 GCTT-TTGCATTATGCCTCTTCGGCCGGCTC
318 GCTTGCT-CATTATGCCTCTCCGACCAGCTC
*
26661683 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
1 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
26661744 ATCAGACCAG
Statistics
Matches: 630, Mismatches: 103, Indels: 72
0.78 0.13 0.09
Matches are distributed among these distances:
343 3 0.00
344 105 0.17
345 1 0.00
346 1 0.00
347 2 0.00
352 1 0.00
353 117 0.19
354 23 0.04
355 64 0.10
356 26 0.04
357 1 0.00
358 3 0.00
359 1 0.00
360 1 0.00
363 2 0.00
364 22 0.03
365 125 0.20
366 126 0.20
367 2 0.00
368 3 0.00
370 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (347 bp):
AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACAACAACAGGATCGATAACACG
TAGGGGGATCGAGCCGATCCCCAACTACGCATTCTGCCTCTCCGACCAGCTGAGCGCCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATACGGAGCTCATTCCACGTCTAAGCCCCAACCAGACCAAGG
GTTGTGGAGCATGCAGTGAGATCGATAGCACACAAAGGGGGACCGAGCTGATCCCCGGCTTGCTC
ATTATGCCTCTCCGACCAGCTC
Found at i:26661901 original size:159 final size:159
Alignment explanation
Indices: 26661539--26661904 Score: 423
Period size: 159 Copynumber: 2.3 Consensus size: 159
26661529 CGCACATCCG
* * * * * * *
26661539 TTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATTGTCTAAGCCCCAGCCGGACTGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-TGTCTAAGCACCAGCCAGACCGAGGGC
* ** * * * * **
26661604 TGTGGCAGCGGGATCGGTAGCGCGCAAGGGGGGACCGGGTCGATCCTCGGCTTTTGCATTATGCC
65 TGTGGCAGCAGGATCGACAGCACGCAAGGGGAGACCGGGTCGATCCCCAGCTTGCGCATTATGCC
* *
26661669 TCTTCGGCCGGCTCAGCGCCCGCACGCTCA
130 TCTCCGGCAGGCTCAGCGCCCGCACGCTCA
* * *
26661699 TTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCAGACCGAGGG
* *
26661762 CTGTGGTAGCAGGATCGACAGCACGC-AGGGGCAGACCGGGTCGATCCCCAGCTTGCGCATTCTG
64 CTGTGGCAGCAGGATCGACAGCACGCAAGGGG-AGACCGGGTCGATCCCCAGCTTGCGCATTATG
* * * *
26661826 CCTCTCCGGCATGTTGAGCGCCTGCACGCTCA
128 CCTCTCCGGCAGGCTCAGCGCCCGCACGCTCA
*
26661858 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
26661905 TACGGAGCTC
Statistics
Matches: 171, Mismatches: 30, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
158 11 0.06
159 127 0.74
160 30 0.18
161 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGACCGAGGGCT
GTGGCAGCAGGATCGACAGCACGCAAGGGGAGACCGGGTCGATCCCCAGCTTGCGCATTATGCCT
CTCCGGCAGGCTCAGCGCCCGCACGCTCA
Found at i:26661916 original size:26 final size:26
Alignment explanation
Indices: 26661876--26661928 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26661866 GTTGGCTTAG
*
26661876 GCATACGGAGTTCATT-CCATATCTAA
1 GCATACGGAGCTCATTCCCA-ATCTAA
26661902 GCATACGGAGCTCATTCCCAATCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
26661928 G
1 G
26661929 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAATCTAA
Found at i:26662033 original size:5 final size:5
Alignment explanation
Indices: 26662023--26662048 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
26662013 TGCTGGCAGA
26662023 ATGGC ATGGC ATGGC ATGGC ATGGC A
1 ATGGC ATGGC ATGGC ATGGC ATGGC A
26662049 GAAATATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.38, T:0.19
Consensus pattern (5 bp):
ATGGC
Found at i:26662191 original size:25 final size:26
Alignment explanation
Indices: 26662161--26662212 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26662151 GTTGACTTTG
26662161 GCATAC-GAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26662186 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26662212 G
1 G
26662213 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26663011 original size:26 final size:26
Alignment explanation
Indices: 26662981--26663033 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26662971 GTTGACTTAG
*
26662981 GCATACGGAGTTCATCCCCAGACTAA
1 GCATACGAAGTTCATCCCCAGACTAA
* * *
26663007 GCATACGAAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGACTAA
26663033 G
1 G
26663034 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGACTAA
Found at i:26663291 original size:26 final size:26
Alignment explanation
Indices: 26663255--26663307 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26663245 GTTGACTGAG
26663255 GCATACGGAGTTCATGCCCAATCTAA
1 GCATACGGAGTTCATGCCCAATCTAA
* *
26663281 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAATCTAA
26663307 G
1 G
26663308 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAATCTAA
Found at i:26663760 original size:158 final size:156
Alignment explanation
Indices: 26663281--26663782 Score: 542
Period size: 158 Copynumber: 3.2 Consensus size: 156
26663271 CCCAATCTAA
* * ** *
26663281 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGATCTAGGGTTACGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCAGACCGAGGGTTGTGGTAGCAGGATCGAC
* *
26663345 AGCAC-ATAGGGGGGACTGGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCGGTTGAGCG
65 AGCACGA-AGGGGGGAC-GGGTCGATCCCCGGCTTGCGCATTCTGCCTC-TCGGTCGGTTGAGAG
*
26663409 CCCACACGCTCGTTTCGTGGGTTGGCTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * * *
26663439 GCATAGGGAGCTCATTACATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAAACCAGACCGAGGGTTGTGGTAGCAGGATCGACA
* * * * * * * *
26663504 ACATGCAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCCTTTCGGCCGGCTGAGAGC
66 GCACGAAG-GGGGGA-CGGGTCGATCCCCGGCTTGCGCATTCTG-CCTCTCGGTCGGTTGAGAGC
* * *
26663569 CCGCACGCTTGTTTCGTGGGTTGACTTAT
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * *
26663598 GCATACGGGGTTCATTCCCA-GTCTAAGATCGGATCAGACCGAGGGTTGTGGTAGCAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAAACCAGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * ** *
26663662 AGTACGAAGGGGGGATCGGGTTGATCCCTGGCTTGCGTGTTCTGCCTCTCAGGTCGGTTGAGTGC
65 AGCACGAAGGGGGGA-CGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTC-GGTCGGTTGAGAGC
26663727 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
26663756 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
26663783 CATACGAAGC
Statistics
Matches: 276, Mismatches: 60, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
157 10 0.04
158 139 0.50
159 121 0.44
160 6 0.02
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAAACCAGACCGAGGGTTGTGGTAGCAGGATCGACA
GCACGAAGGGGGGACGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCGGTCGGTTGAGAGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:26665143 original size:721 final size:718
Alignment explanation
Indices: 26663703--26665225 Score: 2430
Period size: 721 Copynumber: 2.1 Consensus size: 718
26663693 CTTGCGTGTT
* * * *
26663703 CTGCCTCTCAGGTCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
1 CTGCCTCTCTGGTTGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* *
26663768 CATTCCATGTCTAAGCATACGAAGCTCATTCCCAATCTAAGATTTTGAGCCACGGTGTACATGCT
66 CATTCCATGTCTAAGCATACAAAACTCATTCCCAATCTAAGATTTTGAGCCACGGTGTACATGCT
** * * * *
26663833 GGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTGCTCGGAGCATCTCCGGAGCATTGCCGGAGA
131 GGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTGCCCGGACCAGCTCCGGAGCATCGCCGGAGA
** *
26663898 GCCAAACCGGTGACATTAGGGGTTTCGATGATTGGGGGGGCCGGTTGGTGTGCACACAGGATGTG
196 GCCAAACCGACGACATTAGGGGTTTCGATGATTGGGGGGGCCGGTGGGTGTGCACACAGGATGTG
** *
26663963 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTGTATCCCTCATCAAACCTCAAGAACTCAG
261 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
26664028 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
326 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
*
26664093 GGGGACACTTATTTCAAACGATCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTG
391 AGGGACACTTATTTCAAACGATCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
26664158 TGCATCCAAAAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAATTCTTTCTAAAAAAAT
456 TGCATCCAAAAAAAATACAAGGATCACCTCTACCAAATTTAGGGAAAAATTCTTTCTAAAAAAAT
* *
26664223 TTAGAAAAATCCCGAACCCCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGT
521 TTAGAAAAATCCCGAACCACAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGC
26664288 CACGAAACTTGACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
586 CACGAAACTTGACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
26664353 GGCATGGCAGAAATATGAAGATGTGCTTGGACCCACCTACCACCCGTTCGATCCTCAGCTTGCGC
651 GGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCCCAGCTTGCGC
26664418 ATC
716 ATC
* *
26664421 CTGCCTCTCTGGTTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTT
1 CTGCCTCTCTGGTTGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
26664486 CATTCCATGTCTAAGCATACAAAACTCATTCCCAATCTAAGA-TTTGAGCCACGGTGTACATGCT
66 CATTCCATGTCTAAGCATACAAAACTCATTCCCAATCTAAGATTTTGAGCCACGGTGTACATGCT
26664550 GGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTGCCCAGGACACCAGCGT-CGGAGCATCGCCG
131 GGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTGCCC-GG--ACCAGC-TCCGGAGCATCGCCG
* * *
26664614 GAGAGCCTAACCGACGGCATT-GGAGGTTTCGATGATT-GGGGGGCCGG-GGGTTGTGCGCAC-G
192 GAGAGCCAAACCGACGACATTAGG-GGTTTCGATGATTGGGGGGGCCGGTGGG-TGTGCACACAG
*
26664675 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAG
255 -GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
*
26664740 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT
319 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGT
* * * *
26664805 CTGAAATAGGGACACTTTTTTCATACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGATT
384 CTGAAATAGGGACACTTATTTCAAACGATCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAAT
* * *
26664870 TTTTTTGTGCATGCGAAAAACAATACAAGGATCACCTCTACCAGATTTAGGGATAAAATTCTTTC
449 TTTTTTGTGCAT-CCAAAAAAAATACAAGGATCACCTCTACCAAATTTAGGGA-AAAATTCTTTC
* * * *
26664935 TAAAAAAATTTAGAAAAATCCTGTACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGG
512 TAAAAAAATTTAGAAAAATCCCGAACCACAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGGG
26665000 TCGTCTTGCCACGAAACTTGACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAA
577 TCGTCTTGCCACGAAACTTGACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAA
26665065 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCCC
642 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCCC
* *
26665130 GGCTTGTGCATC
707 AGCTTGCGCATC
* * * * * *
26665142 CTGCCTCTCTGGTTGGTTGAGCACTCGCACGCTTGTTACGAGGGTTGACTTAGGCATACGAAGTT
1 CTGCCTCTCTGGTTGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
*
26665207 CATCCCCA-GTCTAAGCATA
66 CAT-TCCATGTCTAAGCATA
26665226 TGGAGTTCAT
Statistics
Matches: 741, Mismatches: 54, Indels: 17
0.91 0.07 0.02
Matches are distributed among these distances:
717 57 0.08
718 105 0.14
719 216 0.29
720 82 0.11
721 278 0.38
722 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (718 bp):
CTGCCTCTCTGGTTGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCATGTCTAAGCATACAAAACTCATTCCCAATCTAAGATTTTGAGCCACGGTGTACATGCT
GGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTGCCCGGACCAGCTCCGGAGCATCGCCGGAGA
GCCAAACCGACGACATTAGGGGTTTCGATGATTGGGGGGGCCGGTGGGTGTGCACACAGGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
AGGGACACTTATTTCAAACGATCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATCCAAAAAAAATACAAGGATCACCTCTACCAAATTTAGGGAAAAATTCTTTCTAAAAAAAT
TTAGAAAAATCCCGAACCACAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGC
CACGAAACTTGACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCATTCGATCCCCAGCTTGCGC
ATC
Found at i:26666670 original size:30 final size:26
Alignment explanation
Indices: 26666612--26666663 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
26666602 TGACTTAGGC
26666612 ATACGAAGTTCATCCCCAGTCTAAGA
1 ATACGAAGTTCATCCCCAGTCTAAGA
* *
26666638 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATCCCCAGTCTAAGA
26666664 TCGAATAGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGA
Found at i:26666993 original size:26 final size:26
Alignment explanation
Indices: 26666964--26667016 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26666954 GTTGACTTAG
* *
26666964 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
26666990 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
26667016 G
1 G
26667017 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:26667281 original size:354 final size:353
Alignment explanation
Indices: 26666569--26667566 Score: 1035
Period size: 354 Copynumber: 2.8 Consensus size: 353
26666559 GCCTCTCTAG
* *
26666569 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCT
1 TCGGCTGAGCGACCGCACGCTCG-TTCGTGGGTTGACTTAGGCATATGAAGTTCATCCCCAGTCT
* * * *
26666634 AAGAATACGGAGTTCATTCCCAGTCTAAGATCGAATAGGATCGAGGGTTGCGGCAGCAGGATCGA
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * * *
26666699 TAGTACGTAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCG
130 TAGCACGTAAGGGGGA-CCGGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGACCAGCTGAGCG
* * * **
26666764 CCCGCATGCTCATTTTATGGGTTGGCTTATACATACGAAGTACATTCCACATCTAAGCCCTTGCC
194 CCCGCACGCTCATTTTACGGGTTGGCTTAGACATACGAAGTACATTCCACATCTAAGCCCCAGCC
* * * ***
26666829 AGATCGAAGGTTGTGGAAGCAGGACCGACAACGGGATCGACAGCATACAGATGCAGACTGGGCTG
259 AGATCGAAGGTTGTGGAAGCAGGACCGACAACAGGATCGACAGCACACAGAGGCAGACCAAGCTG
*
26666894 ATCCTCGGGTTATGCATTATGACTCTCCGA
324 ATCCCCGGGTTATGCATTATGACTCTCCGA
* * *
26666924 TCGGCTGAGC-ATCGACACGCTCGTTCGGGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCT
1 TCGGCTGAGCGACCG-CACGCTCGTTCGTGGGTTGACTTAGGCATATGAAGTTCATCCCCAGTCT
* *
26666988 AAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGATCAAGGGTTGTGGCAGCAGGATCTG
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATC-G
* * * *
26667053 -CAGCACGTAAGAGGGACCAGGTCGATCCCCGGCTTACGTATTCTGCCTCTCCGGCCAGCTGAGC
129 ATAGCACGTAAGGGGGACC-GGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGACCAGCTGAGC
* * * * * * * **
26667117 GCCCGCACGCTCGTTTTGCGGGTTGGGTTAGGCATACGGAGTATATTCC-CAATTTGGGCCCCAG
193 GCCCGCACGCTCATTTTACGGGTTGGCTTAGACATACGAAGTACATTCCAC-ATCTAAGCCCCAG
* ** * * * * ** **
26667181 CCTGATCGCGGGTTGTGGTAGCAGGACC-AGCAGCAGGATTGGCAGCACGTAGAGGGGGACCAAG
257 CCAGATCGAAGGTTGTGGAAGCAGGACCGA-CAACAGGATCGACAGCACACAGAGGCAGACCAAG
* * * *
26667245 TTGATCCCCGGGTTGA-GGATTATGCCTCTTCGA
321 CTGATCCCCGGGTT-ATGCATTATGACTCTCCGA
* * * * *
26667278 TCGGCTGAGCGCCCGTACGCTCATTTTGTGGGTTGACTTAGGCATATGTAGTTCATCCCCAGTCT
1 TCGGCTGAGCGACCGCACGCTC-GTTCGTGGGTTGACTTAGGCATATGAAGTTCATCCCCAGTCT
* * *
26667343 AAGCATACGGATTTCATTCCCAGTCTAAGCTCGGATCGGATCGAGGGTTGTGGCAGCATGATCGA
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCGA
* * ** *
26667408 TAGCACG-CAGGGGGACCGGGCTGATCCCCGGCTTGCGTATTCTGCCTCTCCGA-GTGACTGACC
130 TAGCACGTAAGGGGGACCGGTC-GATCCCCGGCTTGCGTATTCTGCCTCTCCGACCAG-CTGAGC
** * * * * **
26667471 GCTGGCACGCCCGATTTGT--GGGTTAGCTTAGACATAGGGAGCT-CATTCCATGTCTAAGCCCC
193 GCCCGCACGCTC-ATTT-TACGGGTTGGCTTAGACATACGAAG-TACATTCCACATCTAAGCCCC
* * ** *
26667533 AGCCAAACCGTGGGTTGTGGCAGCAGGACCGACA
255 AGCCAGATCGAAGGTTGTGGAAGCAGGACCGACA
26667567 GCATACAGAG
Statistics
Matches: 528, Mismatches: 99, Indels: 33
0.80 0.15 0.05
Matches are distributed among these distances:
353 7 0.01
354 391 0.74
355 129 0.24
356 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (353 bp):
TCGGCTGAGCGACCGCACGCTCGTTCGTGGGTTGACTTAGGCATATGAAGTTCATCCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCAGGATCGAT
AGCACGTAAGGGGGACCGGTCGATCCCCGGCTTGCGTATTCTGCCTCTCCGACCAGCTGAGCGCC
CGCACGCTCATTTTACGGGTTGGCTTAGACATACGAAGTACATTCCACATCTAAGCCCCAGCCAG
ATCGAAGGTTGTGGAAGCAGGACCGACAACAGGATCGACAGCACACAGAGGCAGACCAAGCTGAT
CCCCGGGTTATGCATTATGACTCTCCGA
Found at i:26668572 original size:26 final size:26
Alignment explanation
Indices: 26668543--26668595 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26668533 GTTGACTTAG
* **
26668543 GCATACGGAGTTTATTTTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26668569 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26668595 G
1 G
26668596 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.