Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 277 of 402
Found at i:26668944 original size:26 final size:26
Alignment explanation
Indices: 26668908--26668963 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
26668898 TGGGTTGACT
*
26668908 TAAGCATACGGAGTTCATCCCTAGTC
1 TAAGCATACGGAGTTAATCCCTAGTC
*
26668934 TAAGCATACGGAGTTAATTCCTAGTC
1 TAAGCATACGGAGTTAATCCCTAGTC
26668960 TAAG
1 TAAG
26668964 ATCGAATCGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTAATCCCTAGTC
Found at i:26669176 original size:368 final size:363
Alignment explanation
Indices: 26668506--26669516 Score: 1094
Period size: 368 Copynumber: 2.7 Consensus size: 363
26668496 CTCTGGTCGG
* * **
26668506 CTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTAT-TTTCAGTCTAAG
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCT-AGTCTAAG
* * * * * * **
26668570 CATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCCAGGGTTAC-AGTAGTAGGATCGACG
65 CATACGGAGTTCATTCCTAGTCTAAGATCGAACGA-ATCAAGGGTTGCGA-CAGCAGGATCGATA
* * * * * *
26668634 GCACGCAGTGGGGACCGGGTCGATCCCCGTCTTGTGCATTCTGCCTCTTCGATCGGTTGAGCACC
128 GCACGCAG-GGGGACCGGGCCGATCCCTG-CTTGCGCATTCTGCCTCTCCGA-CCGTTGAGCGCC
* * * *
26668699 CGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCATGCCTAAGCCCCAGCCGG
190 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC-GAGTACATTCCATGTCTAAGCCCCAGCCGG
* * * **
26668764 ACCGAGGGTTTTGGCAGTAGGCCCGACAACGGGATCGGTAGCACGCAGAGGGGGACCGGGCTGAT
254 ACCGAGGGTTGTGGCAGCAGGCCCGACAACGGGATCGATAGCACGCAGAGGGGGACCAAGCTGAT
* ** * * * * *
26668829 TCGTGGCTTATGCATTATGCCTCTCCGGTCGGCCTCTCCGATCAA
319 CCCCGACTTACGCATTATGCCTCTCCGATCAGCCCCTCCGATCAA
* * * *
26668874 CTGAGCGCCCGTACACTCGTTTTGTGGGTTGACTTAAGCATACGGAGTTCATCCCTAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGC
*
26668939 ATACGGAGTTAATTCCTAGTCTAAGATCGAATCGAATCAAGGGTTGCGACAGCAGGATCGATAGC
66 ATACGGAGTTCATTCCTAGTCTAAGATCGAA-CGAATCAAGGGTTGCGACAGCAGGATCGATAGC
* * * *
26669004 ACACAGGAGGGACCGGGCCGATCCCTGACTTGGGCATTCTGCCTCTCCGGCCGATTGAGGGCCCG
130 ACGCAGG-GGGACCGGGCCGATCCCTG-CTTGCGCATTCTGCCTCTCCGACCG-TTGAGCGCCCG
* *
26669069 CACGCTCGTTTCATGGGTTGGGTTAGGCATACGTAGTACATTCCATGTCTAAGCCCCAGCTGGAC
192 CACGCTCGTTTCATGGGTTGGCTTAGGCATACG-AGTACATTCCATGTCTAAGCCCCAGCCGGAC
* ** * * *
26669134 CGAGGGTTGTGGCAGCAGGTCCGGTAGCGGGATCGATAGCACGCAGATGGGGATCAAGCTGATCC
256 CGAGGGTTGTGGCAGCAGGCCCGACAACGGGATCGATAGCACGCAGAGGGGGACCAAGCTGATCC
* * * **
26669199 CCGACTTGCGCATTATGCCTCTCCGATTAGCCCCTCCGGTCGG
321 CCGACTTACGCATTATGCCTCTCCGATCAGCCCCTCCGATCAA
* * * * *
26669242 CTGAACGCCCGCACGCTCATTTCGTGGGCTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGC
* * * * *
26669307 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGTGACAGCAGGATCGGTAGC
66 ATACGGAGTTCATTCCTAGTCTAAGATC-GAACGAATCAAGGGTTGCGACAGCAGGATCGATAGC
** * * * * ** **
26669372 ACGCAGGGGGACCAAGCTGAT-CCTCGGTTTCGCATTCTGCCTCTCCAGCCCGCCGATTGCCCGC
130 ACGCAGGGGGACCGGGCCGATCCCT-GCTTGCGCATTCTGCCTCTCC-GACCGTTGAGCGCCCGC
* * * *
26669436 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCT-CAATCCATGTCTAAGCCCCAACCGGAC
193 ACGCTCGTTTCATGGGTTGGCTTAGGCATA-CGAG-TACATTCCATGTCTAAGCCCCAGCCGGAC
**
26669500 TAAGGGTTGTGGCAGCA
256 CGAGGGTTGTGGCAGCA
26669517 AGACCGGCAG
Statistics
Matches: 540, Mismatches: 92, Indels: 24
0.82 0.14 0.04
Matches are distributed among these distances:
366 97 0.18
367 22 0.04
368 415 0.77
369 6 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (363 bp):
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGC
ATACGGAGTTCATTCCTAGTCTAAGATCGAACGAATCAAGGGTTGCGACAGCAGGATCGATAGCA
CGCAGGGGGACCGGGCCGATCCCTGCTTGCGCATTCTGCCTCTCCGACCGTTGAGCGCCCGCACG
CTCGTTTCATGGGTTGGCTTAGGCATACGAGTACATTCCATGTCTAAGCCCCAGCCGGACCGAGG
GTTGTGGCAGCAGGCCCGACAACGGGATCGATAGCACGCAGAGGGGGACCAAGCTGATCCCCGAC
TTACGCATTATGCCTCTCCGATCAGCCCCTCCGATCAA
Found at i:26669316 original size:26 final size:26
Alignment explanation
Indices: 26669279--26669331 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26669269 GCTGACTTAG
26669279 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
26669305 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26669331 G
1 G
26669332 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26670896 original size:26 final size:26
Alignment explanation
Indices: 26670866--26670918 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26670856 GTTGACTTAG
26670866 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26670892 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26670918 G
1 G
26670919 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26671096 original size:355 final size:354
Alignment explanation
Indices: 26670439--26671484 Score: 1107
Period size: 355 Copynumber: 2.9 Consensus size: 354
26670429 CCACCCGTTC
* ** * * * *
26670439 GATCCCCAGCTTGCGCATCCTGTCTCTCTGGTCGACTGAGTGCCTGCACGCTCGTTTCGTGGGTT
1 GATCCCCAGCTTACGCATTATGCCTCTCTGGTCGATTGAGTGCCCGCACGCTCGTTTCATGGGTT
* * * * *
26670504 GCCTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAGAATTTATT-CTCAGTCTAAGATCA
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCT-AGTCTAAGATCA
* * * * ** * * *
26670568 GTCCAGATCGAGGGTTACGGCAATAGGATCGGTAGCATGTAGGGGGGATCGAGCCGATCCTCGGC
130 GACCAGATCGAGGGTTGCGACAGTAGGATCGACAGCATGCAGGGGGG-TCGGGCCGATCCCCGGC
* * * * *
26670633 TTACGCATTCTGCCTCACCGGTCGACTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTCGGCA
194 TTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCA
* * ** *
26670698 TATGGAGTACATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTGGTTGTAGGACTGACAGCG
259 TACGGAGTACATTCCATGTCTAAGCCCCAACCGAACTGAGGGTTGTGGCAGTAGGACCGACAGCG
** **
26670763 TG-ATCGACAGTACGCAGAGGGGGATCGGGTT
324 -GAATCGACAACACGCAGAGGGGGATCGGACT
*
26670794 GATCCCCAGCTT-CTGCATTATGCCTCTCTGGTCGGTTGAGTGCCCGCACGCTCGTTTCATGGGT
1 GATCCCCAGCTTAC-GCATTATGCCTCTCTGGTCGATTGAGTGCCCGCACGCTCGTTTCATGGGT
*
26670858 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCG
65 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCA
*
26670923 GACCAGATCGAGGGTTGCGACCGTAGGATCGACAGCATGCAGGGGAGGTCGGGCCGATCCCCGGC
130 GACCAGATCGAGGGTTGCGACAGTAGGATCGACAGCATGCAGGGG-GGTCGGGCCGATCCCCGGC
**
26670988 TTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCTGCACGCTCATTTCGTGACTTGGCTTAGGCA
194 TTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCA
* *
26671053 TACAGAGTACATTCCACT-TCTAAGCCCCAGCCGAACTGAGGGTTGTGGCAGTAGGACCGACAGC
259 TACGGAGTACATTCCA-TGTCTAAGCCCCAACCGAACTGAGGGTTGTGGCAGTAGGACCGACAGC
* * *
26671117 GGAATCGACAACACGTAGAGGGTGATCTGACT
323 GGAATCGACAACACGCAGAGGGGGATCGGACT
* *
26671149 GATCCCCAGCTTACACATTATGCCTCTCCGATCAGCCTCTCCGATCAGCCTCTCCGGTCAGCTGA
1 GATCCCCAGCTTACGCATTATGCCTCT-C--T--G-------G-TC-G-AT-T---G--AG-T--
* * * *
26671214 GCACCCGCGCGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATAC
42 G--CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
* * * * * *
26671279 GAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGATC-AGCAGCACG
105 GGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGTAGGATCGA-CAGCATG
* * * * * * *
26671343 CAAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTTTTCGATCGGTTGAGCT-CCTGCA
169 C-AGGGGGGTCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAG-TGCCTGCA
* *
26671407 CGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAACCGAACT
232 CGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAACCGAACT
* *
26671471 GAGGGCTATGGCAG
296 GAGGGTTGTGGCAG
26671485 CGGGACCAGT
Statistics
Matches: 581, Mismatches: 73, Indels: 48
0.83 0.10 0.07
Matches are distributed among these distances:
354 2 0.00
355 323 0.56
356 7 0.01
358 1 0.00
360 1 0.00
367 1 0.00
368 2 0.00
369 1 0.00
370 1 0.00
371 1 0.00
374 1 0.00
376 2 0.00
377 1 0.00
379 1 0.00
380 2 0.00
381 227 0.39
382 7 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (354 bp):
GATCCCCAGCTTACGCATTATGCCTCTCTGGTCGATTGAGTGCCCGCACGCTCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAG
ACCAGATCGAGGGTTGCGACAGTAGGATCGACAGCATGCAGGGGGGTCGGGCCGATCCCCGGCTT
GCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
CGGAGTACATTCCATGTCTAAGCCCCAACCGAACTGAGGGTTGTGGCAGTAGGACCGACAGCGGA
ATCGACAACACGCAGAGGGGGATCGGACT
Found at i:26671188 original size:13 final size:13
Alignment explanation
Indices: 26671170--26671210 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
26671160 TACACATTAT
26671170 GCCTCTCCGATCA
1 GCCTCTCCGATCA
26671183 GCCTCTCCGATCA
1 GCCTCTCCGATCA
*
26671196 GCCTCTCCGGTCA
1 GCCTCTCCGATCA
26671209 GC
1 GC
26671211 TGAGCACCCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.12, C:0.46, G:0.20, T:0.22
Consensus pattern (13 bp):
GCCTCTCCGATCA
Found at i:26671277 original size:26 final size:26
Alignment explanation
Indices: 26671247--26671299 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26671237 GTTGACTTAG
*
26671247 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
26671273 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
26671299 G
1 G
26671300 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:26671760 original size:158 final size:158
Alignment explanation
Indices: 26671273--26671763 Score: 417
Period size: 158 Copynumber: 3.1 Consensus size: 158
26671263 CCTAGTCTAA
* * * * *
26671273 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGC-GATAGCAGGATCAGC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTAGCAG-CAG-AGGATCAGT
* * * * * * *
26671337 AGCACGCAAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTACCTTTTCGATCGGTTGAGC-T
64 AGCACGCAAGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCAC
*
26671401 CCTGCACGCCCATTTCGTGGGTTGGCTTAG
129 CCTGCACGCTCATTTCGTGGGTTGGCTTAG
* * * ** * *
26671431 GCATAGGGAGCTCATT-CCATGTCTAAGCCCCA-ACCGAACTGAGGGCTATGGCAGC-G-GGACC
1 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAGGG-TA--GCAGCAGAGGATC
* * * * ** * * * *
26671492 AGTGGCACGCAGAGGCGGACCGAGACGATCCTCAACTTGTGCAATATGCCTCTTCGACCGGCTCA
61 AGTAGCACGCA-AGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGA
* * * *
26671557 --ACGCCTGCACGCTCGTTTCATGGGTTGACTTAT
125 GCAC-CCTGCACGCTCATTTCGTGGGTTGGCTTAG
* * ** *
26671590 ACATATGAAGTTCATTCCCAGTCTAAGATTGGACTGAACCGAGGGTAGCAGCAGTAGGATC-GAT
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTAGCAGCAG-AGGATCAG-T
* * *
26671654 AGCACGTAAGGGGGACCGAGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCAC
64 AGCACGCAAGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCAC
*
26671719 CCT-CACGCTCATTTCGTGGCTTGGCTTAG
129 CCTGCACGCTCATTTCGTGGGTTGGCTTAG
*
26671748 GCATACGGAGTTCATT
1 GCATACGAAGTTCATT
26671764 ACATGTATAA
Statistics
Matches: 250, Mismatches: 66, Indels: 34
0.71 0.19 0.10
Matches are distributed among these distances:
156 5 0.02
157 4 0.02
158 122 0.49
159 110 0.44
160 6 0.02
161 2 0.01
162 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTAGCAGCAGAGGATCAGTAG
CACGCAAGGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCC
TGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:26672497 original size:26 final size:26
Alignment explanation
Indices: 26672468--26672520 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26672458 GTTGACTTAG
*
26672468 GCATATGGAGTTTATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
26672494 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
26672520 G
1 G
26672521 ATGAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:26672727 original size:24 final size:24
Alignment explanation
Indices: 26672700--26672754 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
26672690 CGAGGGTTGT
*
26672700 GGCAGCCGCACCGACAGCGGGATC
1 GGCAGCAGCACCGACAGCGGGATC
26672724 GGCAGCAGCACCGACAGCGGGATC
1 GGCAGCAGCACCGACAGCGGGATC
26672748 GGCAGCA
1 GGCAGCA
26672755 CGTATAGGGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.24, C:0.35, G:0.38, T:0.04
Consensus pattern (24 bp):
GGCAGCAGCACCGACAGCGGGATC
Found at i:26674461 original size:26 final size:26
Alignment explanation
Indices: 26674431--26674483 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26674421 GTTGACATAG
26674431 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
26674457 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26674483 G
1 G
26674484 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26674762 original size:159 final size:159
Alignment explanation
Indices: 26674457--26674958 Score: 439
Period size: 159 Copynumber: 3.2 Consensus size: 159
26674447 CCTAGTCTAA
* * * *
26674457 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGAGGGTTGTGGCAG-AAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGCAA-GACCGA
* * * * * * * * *
26674520 CAGCACGCA-AGGGGGATCG-GGCTGATCCCCAGCTTGCGCATTCTACCTCTCC-GATCGGCTGA
64 CAACACGTAGAGGGGGACCGAGTC-GATCCCCAGCTTGCACATTATGCCTCTCCAG-CCGGCTCA
* * **
26674582 GCGCCCGCATGC-CAGTTTCATGGGTTGGCTTAG
127 ACGCCCACACACTCA-TTTCATGGGTTGGCTTAG
* * * * * *
26674615 GCATAAGAAGTTTATTCCATGTCTGAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGAGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCGGACCGAGGGTTGTGGCAGCAAGACCGAC
* * * *
26674679 AACACGTAGAGGGGGACCG-GTCCGATCCTCGGCTTGCACATTATGCCAT-TTCGGCCGGCTCAA
65 AACACGTAGAGGGGGACCGAGT-CGATCCCCAGCTTGCACATTATGCC-TCTCCAGCCGGCTCAA
** * * *
26674742 CGCCTGCACATTCATTTCATGGGTTGACTTAT
128 CGCCCACACACTCATTTCATGGGTTGGCTTAG
*** *
26674774 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGCAAGACCGAC
* * * * * * * *
26674838 AGCACGTAGGGGGGGACGGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCG
65 AACACGTAGAGGGGGACCGAGTCGATCCCCAGCTTGCACATTATGCCTCTCCAGCCGGCTCAACG
* *
26674903 CCCACACGCTCGTTTCATGGGTTGGCTTAG
130 CCCACACACTCATTTCATGGGTTGGCTTAG
26674933 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
26674959 ACATACGGAG
Statistics
Matches: 273, Mismatches: 58, Indels: 25
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 55 0.20
159 205 0.75
160 10 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCGGACCGAGGGTTGTGGCAGCAAGACCGACA
ACACGTAGAGGGGGACCGAGTCGATCCCCAGCTTGCACATTATGCCTCTCCAGCCGGCTCAACGC
CCACACACTCATTTCATGGGTTGGCTTAG
Found at i:26674983 original size:26 final size:26
Alignment explanation
Indices: 26674934--26674984 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
26674924 TTGGCTTAGG
* *
26674934 CATACGGAGTTCATTCCATGTCTAAA
1 CATACGGAGCTCATTCCATATCTAAA
26674960 CATACGGAGCTCATTCCCA-ATCTAA
1 CATACGGAGCTCATT-CCATATCTAA
26674985 GATTTTGAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGGAGCTCATTCCATATCTAAA
Found at i:26675704 original size:26 final size:27
Alignment explanation
Indices: 26675666--26675719 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
26675656 GTTGATTTAG
26675666 GCATACGAAAGTTCATCCCCAGTCTAA
1 GCATACGAAAGTTCATCCCCAGTCTAA
* *
26675693 GCATAC-AAAGTTCATTCCTAGTCTAA
1 GCATACGAAAGTTCATCCCCAGTCTAA
26675719 G
1 G
26675720 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (27 bp):
GCATACGAAAGTTCATCCCCAGTCTAA
Found at i:26676063 original size:26 final size:26
Alignment explanation
Indices: 26676034--26676086 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26676024 GTTGACTTAG
26676034 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
* *
26676060 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
26676086 G
1 G
26676087 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:26676429 original size:366 final size:367
Alignment explanation
Indices: 26675626--26676459 Score: 1040
Period size: 366 Copynumber: 2.3 Consensus size: 367
26675616 CCTCTTTGGT
* *
26675626 CGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGATTTAGGCATACGAAAGTTCATCCCCAGTCT
1 CGGCTGAACGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACG-AAGTTCATCCCCAGTCT
*
26675691 AAGCATACAAAGTTCATTCCTAGTCTAAGATCAGACTGGATAGAGGGTTGCGATAGTAGGATCGG
65 AAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACTGGATAGAGGGTTGCGATAGTAGGATCGG
* * * * *
26675756 CAGCCTGTAAGGGGGATCGGGTTGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA
130 CAGCCTGTAAGGGGGACCGAGTTGATCCCCAGCTTACGCAGTCTGCCTCTCCGACCGGCTGAGCA
* * * *
26675821 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGTATACGGAGTACATTCCATGTCTAAACCCCAGCC
195 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAACCACAGCC
*** *
26675886 AGACCAAGGGTTATGGCAGCAGGACCAGTAGCAGGATTGGCAGCCACAGAAGGGGACTGGCCTGA
260 AGACCAAGGGTTATGGCAGCAGGACCAGTAGCAGGATCCACAGCCACAGAAGGGGACCGGCCTGA
* * *
26675951 TCCCTGGCTTGCGCATTATGCCTCTCCGATCTGCCTTTCCGAC
325 TCCCTGACTTGCGCATTATGCCTCTCCGATCGGCCTCTCCGAC
* ** * *
26675994 TGGCTGAGTGCCCGCATGCTCGTTTCGTAGGTTGACTTAGGCATATGAAGTTCATCCCCAGTCTA
1 CGGCTGAACGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
*** * *
26676059 AGCATATGGAGTTCATTCCCAGTCTAAGATC-GAATTGGATCGAGGGTTGCGATAGTAGGATCGG
66 AGCATACAAAGTTCATTCCCAGTCTAAGATCAG-ACTGGATAGAGGGTTGCGATAGTAGGATCGG
* * * *
26676123 CAGCAC-G-CAGGAGGGACCGAG-TGGTCCCC-GACTTACG-AGTCTGCCTCTCCGATCGGTTGA
130 CAGC-CTGTAAGG-GGGACCGAGTTGATCCCCAG-CTTACGCAGTCTGCCTCTCCGACCGGCTGA
** **
26676183 GTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGTCACA
192 GCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAACCACA
* * * *
26676248 TCCGGACCGAGGGTTATGGCAGCAGGATCGACAGT-G-A-GATCCACAG-CACGTAGAGGGGGAC
257 GCCAGACCAAGGGTTATGGCAGCAGGA-C--CAGTAGCAGGATCCACAGCCAC--AGAAGGGGAC
** *
26676309 CGGGTTGATCCCTGACTTTCGCATTATGCCTCTCCGATCGGCCTCTCCGAC
317 CGGCCTGATCCCTGACTTGCGCATTATGCCTCTCCGATCGGCCTCTCCGAC
* * * * ***
26676360 CGGTTGAACGCCCACATGCTCGTTTCATGGGTTGACTTAGGTATACGAAGTTCATCTTTAGTCTA
1 CGGCTGAACGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
*
26676425 AGCATACAAAGTTCATTCCCAATCTAAGATCAGAC
66 AGCATACAAAGTTCATTCCCAGTCTAAGATCAGAC
26676460 CGGACCGAGA
Statistics
Matches: 395, Mismatches: 61, Indels: 22
0.83 0.13 0.05
Matches are distributed among these distances:
364 3 0.01
365 108 0.27
366 151 0.38
367 88 0.22
368 45 0.11
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (367 bp):
CGGCTGAACGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
AGCATACAAAGTTCATTCCCAGTCTAAGATCAGACTGGATAGAGGGTTGCGATAGTAGGATCGGC
AGCCTGTAAGGGGGACCGAGTTGATCCCCAGCTTACGCAGTCTGCCTCTCCGACCGGCTGAGCAC
CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAACCACAGCCA
GACCAAGGGTTATGGCAGCAGGACCAGTAGCAGGATCCACAGCCACAGAAGGGGACCGGCCTGAT
CCCTGACTTGCGCATTATGCCTCTCCGATCGGCCTCTCCGAC
Found at i:26677603 original size:26 final size:26
Alignment explanation
Indices: 26677567--26677619 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26677557 GTTGACTTAG
26677567 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
26677593 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26677619 G
1 G
26677620 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26677951 original size:26 final size:26
Alignment explanation
Indices: 26677921--26677972 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
26677911 GTTGACTTAG
26677921 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26677947 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26677973 AATTGAATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26678178 original size:354 final size:354
Alignment explanation
Indices: 26677545--26678232 Score: 904
Period size: 354 Copynumber: 1.9 Consensus size: 354
26677535 CGCCCGCACA
*
26677545 CTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
26677610 CTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGGGGGGATCG
66 CCAGTCTAAAATCAGACCGGATCGAGAGTTGCGACAGCAAGATCGACAGCACGCAGGGGGAATCG
* *
26677675 GGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCGACTGAACGCCCGCACGCTCGGTTCATG
131 GATCGATCCCCAGCTTGCGCATTCTACCTCTCCAGCCGACTGAACGCCCGCACGCTCGGTTCATG
* * *
26677740 GGTTGGCTTAGGCATACAGAGTCATTCCACGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGT
196 GGTTGGCTTAGGCATACAGAGTCATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTATGGCAGC
** * * * * *
26677805 AGGACAGGCAGTAGGATCGGCAACATGCAGAGGGGGACTGGGCTGATCC-CCGACTTACGA-ATT
261 AAAACAGACAGCAGGATCGGCAACACGCAGAGAGGGACCGGGCTGATCCTCCG-CTTAC-ACATT
26677868 ATGCCTCTCCGGCTGGCTCAACGCCTGCATG
324 ATGCCTCTCCGGCTGGCTCAACGCCTGCATG
* *
26677899 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
26677964 CCAGTCTAAAAT-TGAATCGGATCGAGAGTTGCGACAGCAGGATCGATAGCACGTAGGGGGAATC
66 CCAGTCTAAAATCAG-ACCGGATCGAGAGTTGCGACAGCAAGATCGACAGCACGCAGGGGGAATC
* *
26678028 GGATCGATCCTC-GACTTGCGCATTCTACCTCTCC-GACCGACTGAGCGCCCGCACGCTC-GTT-
130 GGATCGATCCCCAG-CTTGCGCATTCTACCTCTCCAG-CCGACTGAACGCCCGCACGCTCGGTTC
* * * * *
26678089 AGTGTGTTGGCTTCGGCATACGGAGTACATTCGACGTCTAGGCCCCAGTCGGACCGAGGGTTATG
193 A-TGGGTTGGCTTAGGCATACAGAGT-CATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTATG
* * * * * * * *
26678154 GTAGCAAAACCGACAGCGGGATCGGTAGCACGTAGAGAGGGACCGGGCTGATCCTCTGCTTGCAC
256 GCAGCAAAACAGACAGCAGGATCGGCAACACGCAGAGAGGGACCGGGCTGATCCTCCGCTTACAC
26678219 ATTATGCCTCTCCG
321 ATTATGCCTCTCCG
26678233 AGAAGGCATA
Statistics
Matches: 287, Mismatches: 40, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
352 1 0.00
353 28 0.10
354 256 0.89
355 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (354 bp):
CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAAATCAGACCGGATCGAGAGTTGCGACAGCAAGATCGACAGCACGCAGGGGGAATCG
GATCGATCCCCAGCTTGCGCATTCTACCTCTCCAGCCGACTGAACGCCCGCACGCTCGGTTCATG
GGTTGGCTTAGGCATACAGAGTCATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTATGGCAGC
AAAACAGACAGCAGGATCGGCAACACGCAGAGAGGGACCGGGCTGATCCTCCGCTTACACATTAT
GCCTCTCCGGCTGGCTCAACGCCTGCATG
Found at i:26678288 original size:26 final size:26
Alignment explanation
Indices: 26678238--26678290 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26678228 CTCCGAGAAG
* *
26678238 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
26678264 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
26678290 G
1 G
26678291 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:26679096 original size:26 final size:26
Alignment explanation
Indices: 26679059--26679111 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26679049 GTTGACTTAG
* *
26679059 GCATACGTAGTTCATCCCCAATTTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
26679085 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
26679111 G
1 G
26679112 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:26679235 original size:184 final size:185
Alignment explanation
Indices: 26678882--26679247 Score: 391
Period size: 184 Copynumber: 2.0 Consensus size: 185
26678872 ACCTACCACC
* * * * * *
26678882 AGTTCGATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGT
1 AGTTCGATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGT
* * * * * *
26678947 TATGACAGCAGGATCGATAGCACGTAGGGGGGACCAGGTCGATCCCTAGCTTATGCATTCTGCCT
66 TATGACAGCAAGATCAACAGCACGTAGGGGGGACCAGGCCGATCCCGAGCTTACGCATTCTGCCT
* * * * *
26679012 CTCCAGCTGGCTGAACGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGT
131 CTCCAGCCGACTGAACGCCCGCATCCTCGTTTCGTGGGTTGACCTAGGCATACGT
* *
26679067 AGTTC-ATCCCCAATTTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGT
1 AGTTCGATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGT
* * * * * * *
26679131 TGTGGCAGTAAGATCAACAGCACGTAGGGGGGATCGGGCCGATCCTCGA-CTTGCGCATTTTGCC
66 TATGACAGCAAGATCAACAGCACGTAGGGGGGACCAGGCCGATCC-CGAGCTTACGCATTCTGCC
* * * *
26679195 TTTTC-GACCGACTGAGCGCCCGCACTCCT-G-TTCTGTGGGTTGGCCTAGGCATA
130 TCTCCAG-CCGACTGAACGCCCGCA-TCCTCGTTTC-GTGGGTTGACCTAGGCATA
26679248 GGGAGCTCAT
Statistics
Matches: 147, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
183 4 0.03
184 133 0.90
185 10 0.07
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (185 bp):
AGTTCGATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGT
TATGACAGCAAGATCAACAGCACGTAGGGGGGACCAGGCCGATCCCGAGCTTACGCATTCTGCCT
CTCCAGCCGACTGAACGCCCGCATCCTCGTTTCGTGGGTTGACCTAGGCATACGT
Found at i:26679466 original size:159 final size:157
Alignment explanation
Indices: 26679085--26679466 Score: 360
Period size: 159 Copynumber: 2.4 Consensus size: 157
26679075 CCCAATTTAA
* * * * * *
26679085 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGTGGCAGTAAGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAT-GGACCGAGGGTTGTGGTAGCAGGATCGACA
* * * * * * *
26679150 GCACGTAGGGGGGATCGGGCCGATCCTCGACTTGCGCATTTTGCCTTTTCGACCGACTGAGCGCC
65 GCACGCAGGAGGGATCGGGCCGATCCCCGACATGCGCATTATGCCTCTTCGACCGACTCAGCGCC
***
26679215 CGCACTCCTGTTCTGTGGGTTGGCCTAG
130 CGCACTCCTGTTCTGTGGGTTAAACTAG
* * ** * * *
26679243 GCATAGGGAGCTCATT-CCATGTCTAAGCCCCAGCA-GGATCAAGGGTTGTGGTAGC-GAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAG-ATGGACCGAGGGTTGTGGTAGCAG-GATCG
* * ** *
26679305 ACAGCACGCAGAGAGGGATCGGGCTGATCCCCGGCATGCGCATTATGCCTCTTCGGTCGGCTCAG
62 ACAGCACGCAG-GAGGGATCGGGCCGATCCCCGACATGCGCATTATGCCTCTTCGACCGACTCAG
* * *
26679370 CGCCTGCACT-CTCGTT-TCGTGGGTTAAATTAT
126 CGCCCGCACTCCT-GTTCT-GTGGGTTAAACTAG
*
26679402 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGTGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TGGACCGAGGGTTGTGGTAGCAGGATCGACA
26679467 AAATGCAGAG
Statistics
Matches: 174, Mismatches: 39, Indels: 21
0.74 0.17 0.09
Matches are distributed among these distances:
157 4 0.02
158 54 0.31
159 111 0.64
160 5 0.03
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATGGACCGAGGGTTGTGGTAGCAGGATCGACAG
CACGCAGGAGGGATCGGGCCGATCCCCGACATGCGCATTATGCCTCTTCGACCGACTCAGCGCCC
GCACTCCTGTTCTGTGGGTTAAACTAG
Found at i:26679564 original size:158 final size:157
Alignment explanation
Indices: 26679085--26679586 Score: 440
Period size: 158 Copynumber: 3.2 Consensus size: 157
26679075 CCCAATTTAA
* * * * * *
26679085 GCATACGGAGTTCATTCCCA-ATCTAAGATCAGATCAGACCGAGGGTTGTGGCAGTAAGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGAT-GGACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * * * *
26679149 AGCACGTAGGGGGGATCGGGC-CGATCCTCGACTTGCGCATTTTGCCTTTTCGACCGACTGAGCG
64 AGCACGCAGAGGGGA-CTGGCTCGATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGCTGAGCG
* * * *
26679213 CCCGCACTCCTGTTCTGTGGGTTGGCCTAG
128 CCTGCACTCTTGTTTTGTGGGTTGGCTTAG
* * ** * * *
26679243 GCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCA-GGATCAAGGGTTGTGGTAGC-GAGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAG-ATGGACCGAGGGTTGTGGTAGCAG-GATCGA
* * * ** *
26679306 CAGCACGCAGAGAGGGATCGGGCT-GATCCCCGGCATGCGCATTATGCCTCTTCGGTCGGCTCAG
63 CAGCACGCAGAG-GGGA-CTGGCTCGATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGCTGAG
* * *** *
26679370 CGCCTGCACTCTCGTTTCGTGGGTTAAATTAT
126 CGCCTGCACTCTTGTTTTGTGGGTTGGCTTAG
*
26679402 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATTGGACCGAGGGTTGTGATAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGA-TGGACCGAGGGTTGTGGTAGCAGGATCGAC
** * * * * * *
26679466 AAAATGCAGAGGGGACTGGTTCGATTCTCGGCTTGAGCATTCTGCCTCTCCGACCGGCTGAGCGC
64 AGCACGCAGAGGGGACTGGCTCGATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGCTGAGCGC
* *
26679531 CTGCACGCTTGTTTTATGGGTTGGCTTAG
129 CTGCACTCTTGTTTTGTGGGTTGGCTTAG
*
26679560 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
26679587 CATACGGAGC
Statistics
Matches: 267, Mismatches: 65, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 11 0.04
158 133 0.50
159 118 0.44
160 5 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATGGACCGAGGGTTGTGGTAGCAGGATCGACAG
CACGCAGAGGGGACTGGCTCGATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGCTGAGCGCCT
GCACTCTTGTTTTGTGGGTTGGCTTAG
Found at i:26680317 original size:26 final size:26
Alignment explanation
Indices: 26680281--26680333 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26680271 GTTGACTTAG
26680281 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26680307 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26680333 G
1 G
26680334 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26680697 original size:26 final size:26
Alignment explanation
Indices: 26680649--26680701 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26680639 GTTGACTTAG
*
26680649 GCATACGGAGTTCATCCATAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
*
26680675 GCATATGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCA-TCCACAGTCTAA
26680701 G
1 G
26680702 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:26681179 original size:26 final size:26
Alignment explanation
Indices: 26681143--26681195 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26681133 GTTGAATTAG
*
26681143 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGACTAA
* *
26681169 GCATATGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATCCCCAGACTAA
26681195 G
1 G
26681196 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGACTAA
Found at i:26681329 original size:184 final size:184
Alignment explanation
Indices: 26680995--26681354 Score: 415
Period size: 184 Copynumber: 2.0 Consensus size: 184
26680985 TGCATACAAA
* * **
26680995 TTCATTCCCATTATAAGATCGGACCGGACTGAGGGCTGTGGCAGCAGGATCAACAGCACGCAGGG
1 TTCATTCCCATGATAAGATCGGACCAGACTGAGGGCTGCAGCAGCAGGATCAACAGCACGCAGGG
** * * ** *
26681060 GGGATTGGGTCGATCCTCAGCTTACGCATTCTGCCTCTCCGGTAGGTTGAGCGCCAGCACGCTCG
66 GGGACCGGGCCGATCCTCAGCTTACGCATTCTGCCTCTCCGATAGACTGAGCGCCAGCACGCTCA
*
26681125 TTTCTTGGGTTGAATTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATGGAG
131 TTTCTTGGGTTGAATTAGGCATACGGAGTACAT-CCCATGTCTAAGCATATGGAG
* * **
26681179 TTCATTCCCA-GACTAAGATCGGACCAGA-TCGAGGGTTGCAGCCGCAGGATCAGTAGCACGCAG
1 TTCATTCCCATGA-TAAGATCGGACCAGACT-GAGGGCTGCAGCAGCAGGATCAACAGCACGCAG
* * * * * *
26681242 GGGGGACCGGGCCGATCC-CTGGCTTGCGCATTCTGCCTCTTCGATCGACTGAGCGCCCGCACGG
64 GGGGGACCGGGCCGATCCTC-AGCTTACGCATTCTGCCTCTCCGATAGACTGAGCGCCAGCACGC
** *
26681306 TCATTTCATT-GGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGC
128 TCATTTC-TTGGGTTGAATTAGGCATACGGAGTACATCCCATGTCTAAGC
26681355 CCCAGCCAGA
Statistics
Matches: 146, Mismatches: 25, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
183 6 0.04
184 138 0.95
185 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
TTCATTCCCATGATAAGATCGGACCAGACTGAGGGCTGCAGCAGCAGGATCAACAGCACGCAGGG
GGGACCGGGCCGATCCTCAGCTTACGCATTCTGCCTCTCCGATAGACTGAGCGCCAGCACGCTCA
TTTCTTGGGTTGAATTAGGCATACGGAGTACATCCCATGTCTAAGCATATGGAG
Found at i:26682826 original size:26 final size:26
Alignment explanation
Indices: 26682796--26682846 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
26682786 GTTGACTTAG
26682796 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26682822 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
26682847 TGATCGAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26683396 original size:354 final size:358
Alignment explanation
Indices: 26682746--26683751 Score: 1249
Period size: 354 Copynumber: 2.8 Consensus size: 358
26682736 ACGCATCCTG
** *
26682746 CCTCTCTGGTTGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* *
26682811 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCGAATCAGATCAAGGGTTGCGGC-G
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGATCGAGGGTTGCGGCAG
* * * **
26682875 TAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCTGGCGTACGCATTCTGCCTCTTTGGCC
131 TAGGATCGACAGCACGCA-GGGGGATCGAGCCGATCCC-GGCTTGCGCATTTTGCCTCTCCGGCC
* * * ** *
26682940 AGCTGAGCGCCCGCACACTCGTTTCATACGTTGGCTTAGGCATATGGAGTACATTCCACGTCTAA
194 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAA
* * * *
26683005 GCCCCAGCCGAACTGAGGGTTATGGCAGCAAGACCGGCAACGGGATCGACAACACGCAGAGGGGG
259 GCCCCAGCCG-ACCGAGGGTTGTGGCAGCAAGACCGGCAACAGGATCGACAACACGCAGAGGGAG
* *
26683070 A-TCGGGCTGATCCTCGACTTGCGCATTATG-C-C-T
323 ACT-GGGCTGATCCCCGACTAGCGCATTATGCCTCGT
** *
26683103 -CTC-C-GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGGGTATGGAGTTCAT
1 CCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
26683165 CCCCAGTCTAAGGATACGGAGTTCATTCCCAGTCTAAGATGGGACCGGATCGAGGGTTGCGGCAG
66 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGATCGAGGGTTGCGGCAG
* * *
26683230 TAGGATCGACAGCACGCAGGGGGACCGAGCCGATCACCGGCTTGCGCATTTTGCCTCTCCAGCTG
131 TAGGATCGACAGCACGCAGGGGGATCGAGCCGATC-CCGGCTTGCGCATTTTGCCTCTCCGGCCG
* * *
26683295 GTTGAGCGCCCGCATGCTCGGTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAG
195 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAG
* * * * * *
26683360 CCCTAGCCAGACCGAGGGTTGTGGCAGCAGGACCGGCAATAGGATCGGCAGCTCGCAGAGGGAGA
260 CCCCAGCC-GACCGAGGGTTGTGGCAGCAAGACCGGCAACAGGATCGACAACACGCAGAGGGAGA
* * *
26683425 CTGGGTTGATCCCCGGCTAGTGCATTATGCCTCTTCGGT
324 CTGGGCTGATCCCCGACTAGCGCATTATG-C-C-TC-GT
* * * *
26683464 CAGCCTCTCTGGCCAGCTGAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTT
1 ---CCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* * *
26683529 CATCCCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGAATCAGACCGAGGGTTGCGG
63 CATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGATCGAGGGTTGCGG
* * *
26683594 CAGTAGGATAGGCAGCACGCAGGAGGGATC-AGGCCGATCCCCGGCTTGTGCATTTTGCCTCTCC
128 CAGTAGGATCGACAGCACGCAGG-GGGATCGA-GCCGAT-CCCGGCTTGCGCATTTTGCCTCTCC
* ** *
26683658 GGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATGGGGAGCT-CATTCCATG
190 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACG
26683722 TCTAAGCCCCAGCCGGACCGAGGGTTGTGG
254 TCTAAGCCCCAGCC-GACCGAGGGTTGTGG
26683752 TAGCGGGATT
Statistics
Matches: 553, Mismatches: 75, Indels: 31
0.84 0.11 0.05
Matches are distributed among these distances:
354 275 0.50
355 24 0.04
356 3 0.01
357 1 0.00
359 1 0.00
361 1 0.00
365 3 0.01
366 1 0.00
367 127 0.23
368 115 0.21
369 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (358 bp):
CCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGATCGAGGGTTGCGGCAG
TAGGATCGACAGCACGCAGGGGGATCGAGCCGATCCCGGCTTGCGCATTTTGCCTCTCCGGCCGG
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGC
CCCAGCCGACCGAGGGTTGTGGCAGCAAGACCGGCAACAGGATCGACAACACGCAGAGGGAGACT
GGGCTGATCCCCGACTAGCGCATTATGCCTCGT
Found at i:26683567 original size:26 final size:26
Alignment explanation
Indices: 26683517--26683569 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26683507 GTTGACTTAG
*
26683517 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAATCTAA
*
26683543 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGAAGTTCA-TCCCTAATCTAA
26683569 G
1 G
26683570 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAATCTAA
Found at i:26683846 original size:155 final size:159
Alignment explanation
Indices: 26683577--26684042 Score: 448
Period size: 155 Copynumber: 3.0 Consensus size: 159
26683567 AAGATCGAAT
* * * * * * * *
26683577 CAGACCGAGGGTTGCGGCAGTAGGATAGGCAGCACGCAGGAGGGATC-AGGCCGATCCCCGGCTT
1 CAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGA-GAC-ATCCTCAGCTT
* * * *
26683641 G-TGCATTTTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCAT
64 GAAGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
** *
26683705 GGGGAGCTCATTCCATGTCTAAGCCCCAG-C
129 ACGGAGCTCATTCCATGTCTAAGCACCAGAC
* * * * * * * * *
26683735 CGGACCGAGGGTTGTGGTAGCGGGATTGGCCGCACGCAGAGGGGGA-TGA-AC-TCCTCGGCTT-
1 CAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGAGACATCCTCAGCTTG
* * * * * * * *
26683796 AAGCATTATGCCTCTTCGACGGGCTCAGCGTCCGCACGCTCATTTCGTGGGTTGACTAATGCATA
65 AAGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* *
26683861 CGGAGCTCACTCTCA-GTCTAAG-ATCAGAC
130 CGGAGCTCATTC-CATGTCTAAGCACCAGAC
* *
26683890 CAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCTGGGGGGACCGAGTCGATCCTCAGCTTG
1 CAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGAC-ATCCTCAGCTTG
* * * *
26683955 CA-CATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCTTGGGTTGGCTTAGGCATA
65 AAGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
*
26684019 CGGAGTTCATTCCATGTCTAAGCA
130 CGGAGCTCATTCCATGTCTAAGCA
26684043 TATGGAGCTC
Statistics
Matches: 243, Mismatches: 53, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
154 9 0.04
155 111 0.46
156 3 0.01
157 3 0.01
158 109 0.45
159 8 0.03
ACGTcount: A:0.18, C:0.29, G:0.32, T:0.22
Consensus pattern (159 bp):
CAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGAGACATCCTCAGCTTGA
AGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
GGAGCTCATTCCATGTCTAAGCACCAGAC
Found at i:26684018 original size:158 final size:157
Alignment explanation
Indices: 26683543--26684040 Score: 467
Period size: 158 Copynumber: 3.2 Consensus size: 157
26683533 CCTAGTCTAA
* * * *
26683543 GCATACGGAGTTCATTCCCA-ATCTAAGATC-GAATCAGACCGAGGGTTGCGGCAGTAGGATAGG
1 GCATACGGAGCTCATT-CCATGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATAGG
* * * ** * *
26683606 CAGCACGCAGGAGGGATC-AGGCCGATCCCCGGCTTGTGCATTTTGCCTCTCCGGCCGGCTGAGC
64 CAGCACGCAGGGGGGA-CGA-GACGATCCTCGGCTTGAACATTATGCCTCTCCGACCGGCTGAGC
26683670 GCCCGCACGCTCGTTT-TGTGGGTTGGCTTAG
127 GCCCGCACGCTCGTTTCT-TGGGTTGGCTTAG
** ** * * * * *
26683701 GCATGGGGAGCTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGTAGCGGGATTGGC
1 GCATACGGAGCTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATAGGC
* * * * *
26683765 CGCACGCAGAGGGGGATGA-AC--TCCTCGGCTT-AAGCATTATGCCTCTTCGACGGGCTCAGCG
65 AGCACGCAG-GGGGGACGAGACGATCCTCGGCTTGAA-CATTATGCCTCTCCGACCGGCTGAGCG
* * * * * *
26683826 TCCGCACGCTCATTTCGTGGGTTGACTAAT
128 CCCGCACGCTCGTTTCTTGGGTTGGCTTAG
* * *
26683856 GCATACGGAGCTCACTCTCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGCTCATTC-CATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATAGGC
* * * * * *
26683920 AGCACGCTGGGGGGACCGAGTCGATCCTCAGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGC
65 AGCACGCAGGGGGGA-CGAGACGATCCTCGGCTTGAACATTATGCCTCTCCGACCGGCTGAGCGC
26683985 CCGCACGCTCGTTTCTTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCTTGGGTTGGCTTAG
*
26684014 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGCTCATTCCATGTCTAAG
26684041 CATATGGAGC
Statistics
Matches: 264, Mismatches: 61, Indels: 30
0.74 0.17 0.08
Matches are distributed among these distances:
154 9 0.03
155 109 0.41
156 3 0.01
157 6 0.02
158 128 0.48
159 8 0.03
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGCTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATAGGCA
GCACGCAGGGGGGACGAGACGATCCTCGGCTTGAACATTATGCCTCTCCGACCGGCTGAGCGCCC
GCACGCTCGTTTCTTGGGTTGGCTTAG
Found at i:26684765 original size:26 final size:26
Alignment explanation
Indices: 26684736--26684785 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
26684726 GTTGAGTTAG
*
26684736 GCATACGGAGTTCA-TCCTCAGTCTGA
1 GCATACAGAGTTCATTCC-CAGTCTGA
26684762 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
26684786 AAGATCAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTGA
Found at i:26685142 original size:26 final size:26
Alignment explanation
Indices: 26685103--26685155 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26685093 GTTGATTTAG
*
26685103 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
* *
26685129 GCATACGGACTTCATTCCTAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
26685155 G
1 G
26685156 ATCAAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:26685563 original size:355 final size:355
Alignment explanation
Indices: 26684714--26685665 Score: 952
Period size: 367 Copynumber: 2.6 Consensus size: 355
26684704 CGACCGTACG
* * * *
26684714 CTCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTCATCCTCAGTCTGAGCATACAGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT-
* * * * * * * **
26684779 CCAGTCTAAGATCAGACTGGATCGAGAGTTACGGTAGTAGGATCGACAGCACGCAGGGGGGATCG
65 CCTGTCTAAGATCA-ACCGAATCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGATCG
* ** * * * *
26684844 GGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGTGCCCGCAAGTTTGTTTCATT
129 GGCCGAT-CCCAGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGTGCCCGCAAGCTCGTTTCGTG
* * * ** *
26684909 GATTAGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCAACCGAATCGAGGGTTGTGGTAG
193 GGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAACCGAATCGAGGGTTGTGGCAG
* * * ** *
26684974 TCGAACCGGCAGTGGGATCTGCTGCACGCAAGGGGTACCGGGCTGATCCCTGGCTTGCACATTAT
258 TCGAACCGGCAGCGGGATCTGCAGCACGCAAGGGGGACCGGGCTGATCCCCAGCTTACACATTAT
* *
26685039 GCCTCTTCGGTTGGACTCTCCAACCGATTGAGTGCCCGCACA
323 GCCTCTTC-G--CGAC-CT-----CGACTGAGTGCCCGCACA
* * *
26685081 CTCATTTCGTGGGTTGATTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGACTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
* * * ** *
26685146 CTAGTCTAAGATCAAACCGAATCGAAGGTTGCGACAGCAGGATCGGTAGAACATAAGGGGGATCG
66 CT-GTCTAAGATC-AACCGAATCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGATCG
* * * * * *
26685211 GGTCGATCCTCAGCTTCCGCATTCTGCCTTTTC-GATCGGCTGAGTGCCCGCATGCTCGTTTCGT
129 GGCCGATCC-CAGCTTACGCATTCTGCCTCTCCAG-CCGGCTGAGTGCCCGCAAGCTCGTTTCGT
* * * *
26685275 GGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCTCCAGCTGGA-CTGAGGGTTGTGGC
192 GGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAACCGAATC-GAGGGTTGTGGC
* * * * *
26685339 AG-CAGGACTGGTAGCGGGAT-TGACAGCACGCAGAGGGGGACTGGGTTGATCCCCAGCTTACAC
256 AGTC-GAACCGGCAGCGGGATCTG-CAGCACGCA-AGGGGGACCGGGCTGATCCCCAGCTTACAC
* *
26685402 ATTATGCCTC-TC-CGA-CT-GGCTGAGTGCCCGCACG
318 ATTATGCCTCTTCGCGACCTCGACTGAGTGCCCGCACA
* * *
26685436 TTCGTTTCGTGGGTTGACTTAGCCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTG
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT-
* *
26685501 CCTGTCTAAGATCGAACCGAATCGAGGGTTGTGGCAACAGGATCGGTAGCACGCAGGGGGGATCG
65 CCTGTCTAAGATC-AACCGAATCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGATCG
* * * * * *
26685566 GGCCAATCCCCGACTTACGCATTCTGCCTCCCCAGCCGGCTGAGCGCCTGCACGC-CTGTTTCGT
129 GGCCGATCCCAG-CTTACGCATTCTGCCTCTCCAGCCGGCTGAGTGCCCGCAAGCTC-GTTTCGT
* **
26685630 GGGTTGGCTTAGGCATA-AGAGTTGATTCCATGTCTA
192 GGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTA
26685666 TTGCCCGCAG
Statistics
Matches: 486, Mismatches: 87, Indels: 37
0.80 0.14 0.06
Matches are distributed among these distances:
354 19 0.04
355 188 0.39
356 4 0.01
361 2 0.00
363 2 0.00
366 9 0.02
367 227 0.47
368 35 0.07
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (355 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
CTGTCTAAGATCAACCGAATCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGATCGGG
CCGATCCCAGCTTACGCATTCTGCCTCTCCAGCCGGCTGAGTGCCCGCAAGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAACCGAATCGAGGGTTGTGGCAGTCG
AACCGGCAGCGGGATCTGCAGCACGCAAGGGGGACCGGGCTGATCCCCAGCTTACACATTATGCC
TCTTCGCGACCTCGACTGAGTGCCCGCACA
Found at i:26686033 original size:26 final size:26
Alignment explanation
Indices: 26685983--26686035 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26685973 GTTGGCTTAG
* *
26685983 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
26686009 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
26686035 G
1 G
26686036 ATTTTTGAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:26687070 original size:26 final size:26
Alignment explanation
Indices: 26687034--26687086 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26687024 GTTGACTTAG
26687034 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
26687060 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26687086 G
1 G
26687087 ACCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26687433 original size:26 final size:26
Alignment explanation
Indices: 26687403--26687455 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26687393 GTTGACTTAG
*
26687403 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
26687429 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26687455 G
1 G
26687456 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26687563 original size:368 final size:365
Alignment explanation
Indices: 26686813--26688350 Score: 1677
Period size: 368 Copynumber: 4.2 Consensus size: 365
26686803 TCACCTGCAC
** ** *
26686813 GCTGAGCGCTTGCACGCTCGTTTCGTATGTTGGCTTAGGCATACGGAGTACATTCCACGTCAAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAG
* * * * * * ***
26686878 CCCCAGTCGGATCGAGGGTTGTGGTAGCAAGATCGGCAGTGAGATCGACAGCATGGAGAGGGGGA
66 CCCCAGTCGAACCGAGGGTTGTGGCAGCAAGACCGGCAGCGGGATCGACAGCACACAGAGGGGGA
* * * * * * *
26686943 TCGGGCTGATCCTTGGCTTGCACATTTTGCCTCTCCAGTCGACCTCTCCGGCCGACTGAGCG-CC
131 CCGAGCTGATCCTCGACTTGCACATTATGCCTCTCGA-TCGACCTCTCCGGCCGGCTGAGCGCCC
* * * * *
26687007 ACACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTT
195 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * * * * *** *
26687072 CATTCCCAGTCTAAGACCGGATCGGGGCTAGGGTTATGGCAGCAGGATCGACAGCATTGTAAGGG
260 CATTCCCAGTCTAAGATCGGA-CCGGACGAGGGTTGTGGCAGCAGGATCGACAGCA-CACAGGGG
* ** * * * *
26687137 GGACCGAATCGATCCTCGACTTTCTCATTCTACCTATCTGACC-
323 GGATCGAGCCGATCC-CGACTTGCGCATTCTACCTCTCCGACCA
* * *
26687180 GACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAA
1 G-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAA
* * * *
26687245 GCCCCAGTCAAACCGAGGGTTGTGGCAGCGAGACCGGTAGCGGGATCGACAGCACACAGAGGAGG
65 GCCCCAGTCGAACCGAGGGTTGTGGCAGCAAGACCGGCAGCGGGATCGACAGCACACAGAGGGGG
* * * * * * *
26687310 ACCGGGCTGATCC-CCAGCTTGCACATTATGCCTCTTCGATCGGCCTCTCTGGTCGGCTAAGCAC
130 ACCGAGCTGATCCTCGA-CTTGCACATTATGCCTC-TCGATCGACCTCTCCGGCCGGCTGAGCGC
* *
26687374 CCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAG
193 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
* * * * *
26687439 TTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGTAGCAGCATCGACAGCACACAGGG
258 TTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGG
* * * * * *
26687504 GGGATCGGGCCGATCTCCGGCTTGCGTATTCTGCCTCTCCGATCG
322 GGGATCGAGCCGATC-CCGACTTGCGCATTCTACCTCTCCGACCA
* * *
26687549 GCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATTCGGAGTACATTCCACGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAG
* * * * *
26687614 CCGCAG-CTGAGCCAAGGGTTGTGGCAGCAGGA-CGAGCAGCGGGATCGACAGCACGCAGAGGGG
66 CCCCAGTC-GAACCGAGGGTTGTGGCAGCAAGACCG-GCAGCGGGATCGACAGCACACAGAGGGG
* * * ** * * *
26687677 GACTGAGCTAAACCTCGACTTGTGCATTATACCTCTCCGATCGACCTCCCCGGTCGGCTGAGCGC
129 GACCGAGCTGATCCTCGACTTGCACATTATGCCTCT-CGATCGACCTCTCCGGCCGGCTGAGCGC
**
26687742 CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
193 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
* *
26687807 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGC-GAGATCGATAGCACACAGA
258 TTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTGTGGCAGCAG-GATCGACAGCACACAGG
* * * * * *
26687871 GGGGATCGGGCCGATCCCTGGCTTACGCATTCTACCTTTTCGGCCA
321 GGGGATCGAGCCGATCCC-GACTTGCGCATTCTACCTCTCCGACCA
* * * *
26687917 GCTGAGTGCCTGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAG
** * * * *
26687982 CCCCAACCGGACCGAGGGTTGTGGCAGCAAGACCGGCAGTGGGATCGACAACACATAGAGGGGGA
66 CCCCAGTCGAACCGAGGGTTGTGGCAGCAAGACCGGCAGCGGGATCGACAGCACACAGAGGGGG-
** * ** * * *
26688047 ACCGAGCTGATCCTCGACTTGTGCATTACGCCTCTCTGGCCG-CCCCTCCAGCCGGCTGAGTGCC
130 ACCGAGCTGATCCTCGACTTGCACATTATGCCTCTC-GATCGACCTCTCCGGCCGGCTGAGCGCC
* *
26688111 CGCACGCTCGTTTCATGGTTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGT
194 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
* * * * * ** **
26688176 TCATTCCCAATCTAAGATTGGACCAGACTGAGGGTTGTGGTAGGAGGATCGACAGCACGTAGTAG
259 TCATTCCCAGTCTAAGATCGGACCGGAC-GAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGG
* * *
26688241 GGATCGAGCCGATCCCCGACTTGCGCATTCTGCCACTCCGGCCA
323 GGATCGAGCCGAT-CCCGACTTGCGCATTCTACCTCTCCGACCA
* * * *
26688285 GCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAG
26688350 C
66 C
26688351 ATACGGAGTT
Statistics
Matches: 982, Mismatches: 169, Indels: 39
0.83 0.14 0.03
Matches are distributed among these distances:
367 9 0.01
368 823 0.84
369 150 0.15
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (365 bp):
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAG
CCCCAGTCGAACCGAGGGTTGTGGCAGCAAGACCGGCAGCGGGATCGACAGCACACAGAGGGGGA
CCGAGCTGATCCTCGACTTGCACATTATGCCTCTCGATCGACCTCTCCGGCCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGACCGGACGAGGGTTGTGGCAGCAGGATCGACAGCACACAGGGGGGA
TCGAGCCGATCCCGACTTGCGCATTCTACCTCTCCGACCA
Found at i:26687807 original size:26 final size:26
Alignment explanation
Indices: 26687771--26687823 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26687761 GTTGACTTAG
26687771 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26687797 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26687823 G
1 G
26687824 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26688169 original size:26 final size:26
Alignment explanation
Indices: 26688139--26688191 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26688129 TTTGACTTAG
*
26688139 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
26688165 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
26688191 G
1 G
26688192 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:26688229 original size:736 final size:734
Alignment explanation
Indices: 26686824--26688350 Score: 1847
Period size: 736 Copynumber: 2.1 Consensus size: 734
26686814 CTGAGCGCTT
** *
26686824 GCACGCTCGTTTCGTATGTTGGCTTAGGCATACGGAGTACATTCCACGTCAAAGCCCCAGTCGGA
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGA
* * * * * * * * *
26686889 TCGAGGGTTGTGGTAGCAAGATCGGCAGTGAGATCGACAGCATGGAGAGGGGGATCGGGCTGATC
66 CCAAGGGTTGTGGCAGCAAGATCGGCAGCGAGATCGACAGCACGCAGAGGGGGATCGAGCTAAAC
* * * * * *
26686954 CTTGGCTTGCACATTTTGCCTCTCCAGTCGACCTCTCCGGCCGACTGAGCGCCACACGTTCATTT
131 CTCGACTTGCACATTATACCTCTCCAGTCGACCTCCCCGGCCGACTGAGCGCCACACGCTCATTT
*
26687019 CGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCT
196 CGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* ** * * *
26687084 AAGACCGGATCGGGGCTAGGGTTATGGCAGCAGGATCGACAGCATTGTAAGGGGGACCGAATCGA
261 AAGACCGGACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCA-T-CAAGGGGGACCGAACCGA
* * *
26687149 TCCTCGACTTTCTCATTCTACCTATCTGACCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGG
324 TCCTCGACTTACGCATTCTACCTATCTGACCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGG
** *
26687214 CTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGTCAAACCGAGGGTTGTGGCAGCGAGAC
389 CTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAACCAAACCGAGGGTTGTGGCAGCAAGAC
* * * *
26687279 CGGTAGCGGGATCGACAGCACACAGAGGAGGACCGGGCTGATCCCCAGCTTGCACATTATGCCTC
454 CGGCAGCGGGATCGACAACACACAGAGGAGGACCGAGCTGATCCCCAGCTTGCACATTACGCCTC
* * * ** * *
26687344 TTCGATCGGCCTCTCTGGTCGGCTAAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATAC
519 TTCGAGCCGCCCCTCCAGCCGGCTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* * **
26687409 GGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGG
584 AGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGG
* * * * *
26687474 TTGCGGTAGCAGCATCGACAGCACACAGGGGGGATCGGGCCGATCTCCGGCTTGCGTATTCTGCC
649 TTGCGGTAGCAGCATCGACAGCACACAGGAGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCC
* * *
26687539 TCTCCGATCGGCTGAGCACCC
714 ACTCCGACCAGCTGAGCACCC
* * * *
26687560 GCACGCTCGTTTCATGGGTTGGCTTAGGCATTCGGAGTACATTCCACGTCTAAGCCGCAG-CTGA
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGA
* *
26687624 GCCAAGGGTTGTGGCAGCAGGA-CGAGCAGCGGGATCGACAGCACGCAGAGGGGGA-CTGAGCTA
66 -CCAAGGGTTGTGGCAGCAAGATCG-GCAGCGAGATCGACAGCACGCAGAGGGGGATC-GAGCTA
** * * *
26687687 AACCTCGACTTGTGCATTATACCTCTCC-GATCGACCTCCCCGGTCGGCTGAGCGCCCGCACGCT
128 AACCTCGACTTGCACATTATACCTCTCCAG-TCGACCTCCCCGGCCGACTGAGCG-CCACACGCT
* *
26687751 CGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
191 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * *
26687816 AGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGC-GAGATCGATAGCA-CACAGAGGGGATCG
256 AGTCTAAGACCGGACCGGACCGAGGGTTATGGCAGCAG-GATCGACAGCATCA-AG-GGGGACCG
** * * * * *
26687879 GGCCGATCC-CTGGCTTACGCATTCTACCT-TTTCGGCC-AGCTGAGTGCCTGCACGTTCGTTTC
318 AACCGATCCTC-GACTTACGCATTCTACCTATCT-GACCGA-CTGAGTGCCCGCACGCTCGTTTC
* * **
26687941 ATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAACCGGACCGAGGGTTGTGG
380 ATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAACCAAACCGAGGGTTGTGG
* * * * **
26688006 CAGCAAGACCGGCAGTGGGATCGACAACACATAGAGGGGGAACCGAGCTGATCCTC-GACTTGTG
445 CAGCAAGACCGGCAGCGGGATCGACAACACACAGAGGAGG-ACCGAGCTGATCCCCAG-CTTGCA
* ** *
26688070 CATTACGCCTC-TCTG-GCCGCCCCTCCAGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGTTTG
508 CATTACGCCTCTTC-GAGCCGCCCCTCCAGCCGGCTAAGCACCCGCACGCTCGTTTCATGGGTTG
* **
26688133 ACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGA
572 ACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGA
* * * ** *
26688198 CCAGA-CTGAGGGTTGTGGTAGGAGGATCGACAGCACGTAGTAGGGATCGAGCCGATCCCCGACT
637 CCAGATC-GAGGGTTGCGGTAGCAGCATCGACAGCACACAGGAGGGATCGAGCCGATCCCCGACT
* *
26688262 TGCGCATTCTGCCACTCCGGCCAGCTGAGCGCCC
701 TGCGCATTCTGCCACTCCGACCAGCTGAGCACCC
* * * *
26688296 GAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGC
1 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGC
26688351 ATACGGAGTT
Statistics
Matches: 667, Mismatches: 109, Indels: 30
0.83 0.14 0.04
Matches are distributed among these distances:
734 1 0.00
735 14 0.02
736 515 0.77
737 137 0.21
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (734 bp):
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGA
CCAAGGGTTGTGGCAGCAAGATCGGCAGCGAGATCGACAGCACGCAGAGGGGGATCGAGCTAAAC
CTCGACTTGCACATTATACCTCTCCAGTCGACCTCCCCGGCCGACTGAGCGCCACACGCTCATTT
CGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGACCGGACCGGACCGAGGGTTATGGCAGCAGGATCGACAGCATCAAGGGGGACCGAACCGATC
CTCGACTTACGCATTCTACCTATCTGACCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCT
TAGGCATACAGAGTACATTCCACATCTAAGCCCCAACCAAACCGAGGGTTGTGGCAGCAAGACCG
GCAGCGGGATCGACAACACACAGAGGAGGACCGAGCTGATCCCCAGCTTGCACATTACGCCTCTT
CGAGCCGCCCCTCCAGCCGGCTAAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAG
AGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTT
GCGGTAGCAGCATCGACAGCACACAGGAGGGATCGAGCCGATCCCCGACTTGCGCATTCTGCCAC
TCCGACCAGCTGAGCACCC
Found at i:26688359 original size:26 final size:26
Alignment explanation
Indices: 26688323--26688401 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
26688313 GTTGGCTTAG
*
26688323 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
26688349 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
* *
26688375 GCATACAGAGCTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
26688401 G
1 G
26688402 ATTTTGAGCC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
25 1 0.02
26 48 0.98
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:26689593 original size:26 final size:26
Alignment explanation
Indices: 26689553--26689605 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26689543 GTTGGCTTAG
*
26689553 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
26689579 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
26689605 G
1 G
26689606 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:26690286 original size:27 final size:27
Alignment explanation
Indices: 26690256--26690313 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
26690246 CATGGGTTGA
*
26690256 CTAAGGCATACAG-AGTTCATCCCCAGT
1 CTAAGGCATA-AGAAGTTCATCCCCACT
* *
26690283 CTAA-GCATATGAAGTTCATTCCCACT
1 CTAAGGCATAAGAAGTTCATCCCCACT
26690309 CTAAG
1 CTAAG
26690314 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 1 0.04
26 21 0.81
27 4 0.15
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CTAAGGCATAAGAAGTTCATCCCCACT
Found at i:26690659 original size:26 final size:26
Alignment explanation
Indices: 26690629--26690681 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26690619 GTTGACTTAG
26690629 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
26690655 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26690681 G
1 G
26690682 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26692144 original size:26 final size:26
Alignment explanation
Indices: 26692094--26692146 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26692084 GTTGGCTTAG
* *
26692094 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGCTCATTCCATATCTAA
26692120 GCATATGGAGCTCATTCCCA-ATCTAA
1 GCATATGGAGCTCATT-CCATATCTAA
26692146 G
1 G
26692147 ATTTTCAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGCTCATTCCATATCTAA
Found at i:26693539 original size:159 final size:156
Alignment explanation
Indices: 26693161--26693679 Score: 409
Period size: 159 Copynumber: 3.3 Consensus size: 156
26693151 CGCACACTCG
* *
26693161 TTTCGTGGGTTGACTTAGGCATAGGAGTTCATCCCCAGTCTAAGATTAGACCGGA-TCGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTT
* * * * * * * * * *
26693225 GCGGCAGCAGGATCGACAGCATGCAGGGGGATCGGGCTGATCCTCGGCTTGTACATTCTGCCTAT
65 GCGGCAGCAGGACCGACAGCACGCAGGGGGACCAGACCGATCCCCGACTTGCACATTATGCCTAT
*
26693290 CCGGCCGGCTAAGCGCCCGCATGCCCG
130 CCGGCCGGCTAAGCGCCCGCATGCCCA
* * ** **
26693317 TTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATT-CCATGTCTAAGCCCCA-ACCGGACCAAGGG
1 TTTCGTGGGTTGACTTAGGCATA-GGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGG
* * * *
26693380 TTGTGGC-GACGGGACCGATAGCACGCAAAGGGGGACCAGACCGATCCCCGACTTGCGCATTATG
63 TTGCGGCAG-CAGGACCGACAGCACGC--AGGGGGACCAGACCGATCCCCGACTTGCACATTATG
* * * * *
26693444 CCTCTTCGGCCTGCTCAGCGCCCGCATGCTCA
125 CCTATCCGGCCGGCTAAGCGCCCGCATGCCCA
* * *
26693476 TTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATA-GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
* * * * * * ** * * * *
26693541 ACGGTAGCAGGATCGACAACACGCAGGGGCGGATCGGGTCAATCCCCGACTTACGCATTCTGCCT
65 GCGGCAGCAGGACCGACAGCACGCA-GGG-GGACCAGACCGATCCCCGACTTGCACATTATGCCT
* * * * ** * *
26693606 CTCTGGCCGGCTGAGCGCACGCACACTCG
128 ATCCGGCCGGCTAAGCGCCCGCATGCCCA
* * *
26693635 TTTCGTGGGTTGGCATAGGCGTACGGAGTTCATT-CCATGTCTAAG
1 TTTCGTGGGTTGACTTAGGCATA-GGAGTTCATTCCCA-GTCTAAG
26693680 CATACGGAGC
Statistics
Matches: 285, Mismatches: 65, Indels: 23
0.76 0.17 0.06
Matches are distributed among these distances:
156 26 0.09
157 45 0.16
158 9 0.03
159 201 0.71
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
TTTCGTGGGTTGACTTAGGCATAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG
CGGCAGCAGGACCGACAGCACGCAGGGGGACCAGACCGATCCCCGACTTGCACATTATGCCTATC
CGGCCGGCTAAGCGCCCGCATGCCCA
Found at i:26693693 original size:26 final size:26
Alignment explanation
Indices: 26693656--26693705 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
26693646 GGCATAGGCG
*
26693656 TACGGAGTTCATT-CCATGTCTAAGCA
1 TACGGAGCTCATTCCCA-GTCTAAGCA
26693682 TACGGAGCTCATTCCCAGTCTAAG
1 TACGGAGCTCATTCCCAGTCTAAG
26693706 ATTTTGAGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGCTCATTCCCAGTCTAAGCA
Found at i:26695137 original size:158 final size:158
Alignment explanation
Indices: 26694763--26695138 Score: 341
Period size: 158 Copynumber: 2.4 Consensus size: 158
26694753 TAAGCATATG
* * * *
26694763 GAGTTCATT-CTCAGTCTAAGATCGAACCAGACCGAGGTTTACGACAGCAGGATCGACAGCACGC
1 GAGTTCATTCCT-AGTCTAAGATCGAACTAGGCCGAGGGTTACGAGAGCAGGATCGACAGCACGC
** * * ** *
26694827 AGGGGGGACTAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGTCGGCTGAGCACCCGCACG
65 AGGGGGGACTAGACCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCGGCTCAGCACCCGCACG
* * **
26694892 CCCATTTCGTGGGTTGGCTTAGGCATAGG
130 CCCATTTCGGGGGTTGACTTAGGCATACA
* * ** * * ** * *
26694921 GAGCTCATTCC-ATGTCTAAG-CCCTAGTCGGACCGAGGGTTGTG-GCAGCGGGACCGACAGCAC
1 GAGTTCATTCCTA-GTCTAAGATCGAACTAGG-CCGAGGGTTACGAG-AGCAGGATCGACAGCAC
* * *
26694983 GCTGAGGGGGAC-CGACCGATCCCCGGCTTGCGCATTATGCCTCT-TCGACCGGCTCAGCGCCCG
63 GCAG-GGGGGACTAGACCGATCCCCGGCTTGCGCATTATGCCTCTCT-GACCGGCTCAGCACCCG
* * * * *
26695046 TACGCTCATTTTGGGGGTTGACTTATGCCTACA
126 CACGCCCATTTCGGGGGTTGACTTAGGCATACA
* *
26695079 GAGTTCATTCCTAGTCTAAGATCGGACTAGGCCGAGGGTTACGAGAGCAGGATTGACAGC
1 GAGTTCATTCCTAGTCTAAGATCGAACTAGGCCGAGGGTTACGAGAGCAGGATCGACAGC
26695139 TTGCAAGGGG
Statistics
Matches: 165, Mismatches: 44, Indels: 18
0.73 0.19 0.08
Matches are distributed among these distances:
157 5 0.03
158 145 0.88
159 15 0.09
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GAGTTCATTCCTAGTCTAAGATCGAACTAGGCCGAGGGTTACGAGAGCAGGATCGACAGCACGCA
GGGGGGACTAGACCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCGGCTCAGCACCCGCACGC
CCATTTCGGGGGTTGACTTAGGCATACA
Found at i:26695270 original size:26 final size:26
Alignment explanation
Indices: 26695230--26695282 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26695220 GTTGGCTTTG
*
26695230 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGCTCATTCACA-GTCTAA
*
26695256 GCATACGGAGCTCATTCACAGTCTAA
1 GCATACAGAGCTCATTCACAGTCTAA
26695282 G
1 G
26695283 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCACAGTCTAA
Found at i:26696356 original size:26 final size:26
Alignment explanation
Indices: 26696313--26696363 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26696303 TGACTTAGGC
*
26696313 ATACGGAGTTCATCCCCAGTCTAAGG
1 ATACGGAGTCCATCCCCAGTCTAAGG
*
26696339 ATACGGAGTCCATTCCCAGTCTAAG
1 ATACGGAGTCCATCCCCAGTCTAAG
26696364 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (26 bp):
ATACGGAGTCCATCCCCAGTCTAAGG
Found at i:26696841 original size:26 final size:26
Alignment explanation
Indices: 26696811--26696863 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26696801 GTTGGCTTTG
*
26696811 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGCTCATTCCCA-GTCTAA
*
26696837 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
26696863 G
1 G
26696864 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:26697929 original size:26 final size:26
Alignment explanation
Indices: 26697899--26697951 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26697889 GTTGAATTAG
* *
26697899 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
* *
26697925 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
26697951 G
1 G
26697952 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:26698955 original size:26 final size:26
Alignment explanation
Indices: 26698925--26698976 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
26698915 GTTGACTTAG
26698925 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26698951 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26698977 TATCAGATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26699553 original size:367 final size:365
Alignment explanation
Indices: 26698874--26699908 Score: 1170
Period size: 367 Copynumber: 2.8 Consensus size: 365
26698864 TGCACATCCT
* *
26698874 GCCTCTCTGGTCGGCTGAGCGCCCGCACGATCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
26698939 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCAGATCAGATCGAGGGTTGCGGCA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCAGCA
* * * *
26699004 GTAGGAT---CAGCAGCGCAGGGGGCACCGGGTTGATCCCCGACTT-GTGCATTCTGCCTCTACG
131 GTAGGATCGACAGCA-CGCAGGGGG-ACCGGGTCGATCCCCGGCTTAAT-CATTCTGCCTCT-CC
* * * * * * ** *
26699065 GCCGACTGAGCGCCCACACGTTCGTTCCGTGGGTTGGCCTAGGCATACAAAGTACATTCCACGTA
192 GCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTC
* * * * * * * *
26699130 TAAGCCCCAGCCGGACCAAGGGTTGTGGTAGCAGGACCGATAGTGGGATTGGCAGCACATAAAGG
257 TAAG-CCCAACCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGGCAGCACACAAAGG
* *
26699195 GGGACC-GGACTGATCCTTGACTTGTACATTATGCCTCTCCAGTCG
321 GGGACCAGG-CTGATCCTCGACTTGCACATTATGCCTCTCCAGTCG
* * * * *
26699240 GCCTCTCCGGTAGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCACACGAAGTTCA
1 GCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
26699305 TCCCCAGTCTAAGCATATGGAGTTCATT-CCAGTCTAAGATCAGATCAGATCGAGGGTTGAAGCA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCAGCA
26699369 GTAGGATCGACAGCACGCAGAGGGGACCGGGTCGATCCCCGGCTTAATCATTCTGCCTCTCCAGC
131 GTAGGATCGACAGCACGCAG-GGGGACCGGGTCGATCCCCGGCTTAATCATTCTGCCTCTCC-GC
* *
26699434 CGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGGATTAGGCATACGGAGTACATTCCACGTCTA
194 CGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTA
* * * * * ** *
26699499 AGCTCCAATCGAACTGAGGGTTGTGGCAGTAGGATCGGCAGCGGGATCGGCAGCATGCAGAGGGG
259 AGC-CCAACCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGGCAGCACACAAAGGGG
* ** *
26699564 GACCAGGCTGATCCTCGGCTTGCGGATTATGCCTCTCTAGTCG
323 GACCAGGCTGATCCTCGACTTGCACATTATGCCTCTCCAGTCG
* * * * * * * * * *
26699607 ACTTTTTTTGCCGACTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTA
1 GCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * *
26699672 TCCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAACGGACCGGACCGAGGGTTGCAGCA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCAGCA
* * * *
26699737 GCAGGATCGACAGCATGCAGGGGGGATCGGGTCGATCCCCGGTTTACA-CATTCTGCCTCTCCGA
131 GTAGGATCGACAGCACGCA-GGGGGACCGGGTCGATCCCCGGCTTA-ATCATTCTGCCTCTCCG-
* * * * *
26699801 TCGGCTGAA-CACCCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATAGGGAGCT-CATTCCATGT
193 CCGGCT-AAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGT
* * * * *
26699864 CTAGGCCCTAGCTGAACCGAGGGTTGTGGCAGCGGGACCGGCAGC
256 CTAAGCCC-AACCGAACCGAGGGTTGTGGCAGCAGGACCGACAGC
26699909 ACACAGAGGG
Statistics
Matches: 564, Mismatches: 90, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
365 40 0.07
366 87 0.15
367 251 0.45
368 181 0.32
369 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (365 bp):
GCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCAGCA
GTAGGATCGACAGCACGCAGGGGGACCGGGTCGATCCCCGGCTTAATCATTCTGCCTCTCCGCCG
GCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAG
CCCAACCGAACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGGCAGCACACAAAGGGGGAC
CAGGCTGATCCTCGACTTGCACATTATGCCTCTCCAGTCG
Found at i:26699694 original size:26 final size:26
Alignment explanation
Indices: 26699658--26699710 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26699648 GTTGACTTAG
*
26699658 GCATACGGAGTTTA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
26699684 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26699710 G
1 G
26699711 AACGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26700133 original size:159 final size:155
Alignment explanation
Indices: 26699681--26700187 Score: 444
Period size: 159 Copynumber: 3.2 Consensus size: 155
26699671 ATCCTCAGTC
**
26699681 TAAGCATACGGAGTTCATTCCCA-GTCTAAGAACGGACCGGACCGAGGGTTGC-AGCAGCAGGAT
1 TAAGCATACGGAGTTCATT-CCATGTCTAAGAACAAACCGGACCGAGGGTTGCGA-CAGCAGGAT
* * * *
26699744 CGACAGCATGCAGGGGGGATCGGGTCGATCCCCGGTTTACACATTCTGCCTCTCCGATCGGCTGA
64 CGACAACACG-A-GGGGGATCGGGTCGAT-CCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGA
*
26699809 ACACCCGCACGCTCGTTTCGTGGGTTGGCT
126 ACGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * * ** * * * * * * * *
26699839 TAAGCATAGGGAGCTCATTCCATGTCTAGGCCCTAGCTGAACCGAGGGTTGTGGCAGCGGGACCG
1 TAAGCATACGGAGTTCATTCCATGTCTAAGAACAAACCGGACCGAGGGTTGCGACAGCAGGATCG
* * * * * * * * * *
26699904 GCAGCACACAGAGGGGGATCGGGTTGATCCCTAGCTTGCACATTATCCCTCTTCGGTCAGCTTAG
66 ACA--ACAC-GAGGGGGATCGGGTCGATCCC-GGCTTGCACATTCTGCCTCTCCGATCGGCTGAA
* **
26699969 TGCCCGCACGCTCGTTTCGTGGGTTAACT
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCT
* * * * * *
26699998 TATGCATACAGAGTTCATTCCCA-GTCTAAGATCAAATCGGATCGAGGGTTGCGACAGTAGGATC
1 TAAGCATACGGAGTTCATT-CCATGTCTAAGAACAAACCGGACCGAGGGTTGCGACAGCAGGATC
* * *
26700062 GACAACACGTAGGGGGCACCGGCTCGATCCTCGGCTTGCTACATTCTGCCTCTCCGATTGGCTGA
65 GACAACACG-AGGGGG-ATCGGGTCGATCC-CGGCTTGC-ACATTCTGCCTCTCCGATCGGCTGA
* *
26700127 ACGCCCGTACGCTCGTTTCATGGGTTGGCT
126 ACGCCCGCACGCTCGTTTCGTGGGTTGGCT
**
26700157 TGGGCATACGGCAGTTCATTCCATGTCTAAG
1 TAAGCATACGG-AGTTCATTCCATGTCTAAG
26700188 CATACGGAGC
Statistics
Matches: 265, Mismatches: 71, Indels: 24
0.74 0.20 0.07
Matches are distributed among these distances:
156 1 0.00
157 13 0.05
158 67 0.25
159 162 0.61
160 21 0.08
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (155 bp):
TAAGCATACGGAGTTCATTCCATGTCTAAGAACAAACCGGACCGAGGGTTGCGACAGCAGGATCG
ACAACACGAGGGGGATCGGGTCGATCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAACGCC
CGCACGCTCGTTTCGTGGGTTGGCT
Found at i:26700884 original size:26 final size:26
Alignment explanation
Indices: 26700854--26700904 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26700844 GTTGACTTAG
26700854 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
26700880 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACAAAGTTCATCCCCAGTCTA
26700905 TGATCAGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:26702570 original size:26 final size:26
Alignment explanation
Indices: 26702523--26702575 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26702513 GTTCACTTAG
* *
26702523 GCATACGGAGTTCAACCTCAGTTTAA
1 GCATACAGAGTTCAACCTCAGTCTAA
*
26702549 GCATACAGAGTTCATTCC-CAGTCTAA
1 GCATACAGAGTTCA-ACCTCAGTCTAA
26702575 G
1 G
26702576 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAACCTCAGTCTAA
Found at i:26702920 original size:26 final size:26
Alignment explanation
Indices: 26702891--26702943 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26702881 GTTCACTTAG
* *
26702891 GCATACGGAGTTTA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
26702917 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
26702943 G
1 G
26702944 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:26702989 original size:368 final size:366
Alignment explanation
Indices: 26702139--26703124 Score: 1196
Period size: 368 Copynumber: 2.7 Consensus size: 366
26702129 CGCACGCTCA
* * * * * *
26702139 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC-AGAGCATATGGAGTTCATTCCAA
1 TTTCGTGGGTTCACTTAGGCATACGGAGTTCATCCCTAGTCTA-AGCATACGAAGTTCATTCCCA
* *** *
26702203 GTCTAAGATCGGACCGATCGAGGGTTATAGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGCT
65 GTCTAAGATCGGACGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCT
* * *
26702268 GATCCCCAACTTACGCATTTTGCCT-TTTCGGCGTG-CTGAGCGCCCGTACGCTCGTTTCGTGGG
130 GATCCCCAGCTTACGCATTTTGCCTCTCT-GGC-TGACTGAGCGCCCGTACGCTCGTTTCGTGAG
* * *
26702331 TTGGTTTAGGCATACGGAGTAGATTCCACGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGTAGTA
193 TTGGTTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCA
* ** * * *
26702396 GGACCAGCAGCGAGATCGGCAGCACGCAGAGGGGACCGAGCTGATCCCCAACTTGCGCATTATGT
258 GGACCAGCAGCGAGATCGACAAAACCCAGAGGGGACCGAGCTGATCCCCAACTTACGCATTATGC
* * * **
26702461 CTCCTCAGCCGGCCTCTCCGGTCGGTTGAGAGCCCGTATGCTCG
323 CTCCTCAGCCGGCCTCTCAGGCCGGCTGAGAGCCCGTACCCTCG
* *
26702505 TTTCGTGGGTTCACTTAGGCATACGGAGTTCA-ACCTCAGTTTAAGCATAC-AGAGTTCATTCCC
1 TTTCGTGGGTTCACTTAGGCATACGGAGTTCATCCCT-AGTCTAAGCATACGA-AGTTCATTCCC
* * *
26702568 AGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATC-AGCAGCACGCAGGGGGGACTGC
64 AGTCTAAGATCGGA-CGGATCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGGGGGGACCGG
* * * * * *
26702632 GTTGATCCCCAGCTTGCGCATTCTGCCTCTCTAGCTGACTGAGCGCCCGCACGCTCGTTTCATGA
127 GCTGATCCCCAGCTTACGCATTTTGCCTCTCTGGCTGACTGAGCGCCCGTACGCTCGTTTCGTGA
* *
26702697 GTTGGTTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGC
192 GTTGGTTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGC
** * * * * * **
26702762 AGGACTGGCAGCGGGATCGATAAAACCCAGAAGGGGATCGGGTTGATCCCTGACTTACGCATTAT
257 AGGACCAGCAGCGAGATCGACAAAACCCAG-AGGGGACCGAGCTGATCCCCAACTTACGCATTAT
* * * * *
26702827 GCCTCTTCGGTCGGCCTTTCAGGCCGGCTGAGTGCCC-TCACCCTCG
321 GCCTCCTCAGCCGGCCTCTCAGGCCGGCTGAGAGCCCGT-ACCCTCG
*
26702873 TTTCGTGGGTTCACTTAGGCATACGGAGTTTATCCCTAGTCTAAGCATACGAAGTTCATTCCCAG
1 TTTCGTGGGTTCACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCCCAG
* * * *
26702938 TCTAAGATCGGATCGGACCGAGGGTTGCGGTAGTAGGATCGACAGCACGCAGGGGGGACCGGGCA
66 TCTAAGATCGGA-CGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCT
* * * * * *
26703003 GATCCTCGGCTTACGCATTTTGCCTCTCCGGCCGACTAAGCGCCCGTACGCCCGTTTCGTGAGTT
130 GATCCCCAGCTTACGCATTTTGCCTCTCTGGCTGACTGAGCGCCCGTACGCTCGTTTCGTGAGTT
* * *
26703068 GGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTG
195 GGTTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGTTGTG
26703125 CTAACGGGAC
Statistics
Matches: 524, Mismatches: 83, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
365 2 0.00
366 65 0.12
367 174 0.33
368 277 0.53
369 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (366 bp):
TTTCGTGGGTTCACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCCCAG
TCTAAGATCGGACGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCTG
ATCCCCAGCTTACGCATTTTGCCTCTCTGGCTGACTGAGCGCCCGTACGCTCGTTTCGTGAGTTG
GTTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGA
CCAGCAGCGAGATCGACAAAACCCAGAGGGGACCGAGCTGATCCCCAACTTACGCATTATGCCTC
CTCAGCCGGCCTCTCAGGCCGGCTGAGAGCCCGTACCCTCG
Found at i:26703218 original size:159 final size:159
Alignment explanation
Indices: 26702977--26703420 Score: 459
Period size: 159 Copynumber: 2.8 Consensus size: 159
26702967 GTAGTAGGAT
* * * * * **
26702977 CGACAGCACGCAG-GGGGGACCGGGCAGATCCTCGGCTTACGCATTTTGCCTCTCCGGCCGACTA
1 CGACAGCACGCAGAGGGGGACCGGTC-GATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGTTA
* * * * *
26703041 AGCGCCCGTACGCCCGTTTCGTGAGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCC
65 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
* * *
26703106 AG-CCGGACCGAGGGTTG-TGCTAACGGGAC
130 AGACCAGACCAAGGGTTGCCG-TAACGGGAC
* * * *
26703135 CGGCAGCACGCAGAGGGGGACCGGTCTGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGTTC
1 CGACAGCACGCAGAGGGGGACCGGTC-GATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGTTA
* * * *
26703200 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCTTTTCCA-GTCTAAG-AT
65 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC-ATTCCATGTCTAAGCAC
** * * *
26703263 TGGACCAGACCAAGGGTTGCCGTAGCTGGAT
129 CAGACCAGACCAAGGGTTGCCGTAACGGGAC
* * * * * *
26703294 CGACAGCAC-CCGAGGTGGATCGGGTCAATCCTCGGCTTGCGCATTCTGCCTCTTCGATCGGTTA
1 CGACAGCACGCAGAGGGGGA-CCGGTCGATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGTTA
* * * *
26703358 AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTAATTCCATGTCTAAGCA
65 AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
26703421 TACGGAGCTC
Statistics
Matches: 233, Mismatches: 46, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
157 5 0.02
158 101 0.43
159 121 0.52
160 6 0.03
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.24
Consensus pattern (159 bp):
CGACAGCACGCAGAGGGGGACCGGTCGATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGTTAA
GCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCA
GACCAGACCAAGGGTTGCCGTAACGGGAC
Found at i:26703371 original size:158 final size:156
Alignment explanation
Indices: 26702917--26703418 Score: 465
Period size: 158 Copynumber: 3.2 Consensus size: 156
26702907 CCTAGTCTAA
* * * *
26702917 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAG-TAGGATCGAC
1 GCATACGGAGTTC-TTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCCGTAGCT-GGATCGAC
* * * * * **
26702981 AGCACGC-AGGGGGGACCGGG-CAGATCCTCGGCTTACGCATTTTGCCTCTCCGGCCGACTAAGC
64 AGCACCCGA-GGGGGA-CGGGTCA-ATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGTTAAGC
* *
26703044 GCCCGTACGCCCGTTTCGTGAGTTGGCTTAG
126 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * * * ** * * * * *
26703075 GCATAGGGAGCTCATTCCATGTCTAAG-CCCCAGCCGGACCGAGGGTTG-TGCTAACGGGACCGG
1 GCATACGGAGTTCTTTCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCCG-TAGCTGGATCGA
* * * * * *
26703138 CAGCACGCAGAGGGGGACCGGTCTGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGTTCAGC
63 CAGCAC-CCGAGGGGGACGGGTC-AATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGTTAAGC
* *
26703203 GCCCGTACGCTCGTTTCGTGGGTTGACTTAT
126 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAG
* * *
26703234 GCATACGGAGTTCTTTTCCAGTCTAAGATTGGACCAGACCAAGGGTTGCCGTAGCTGGATCGACA
1 GCATACGGAGTTC-TTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCCGTAGCTGGATCGACA
* * *
26703299 GCACCCGAGGTGGATCGGGTCAATCCTCGGCTTGCGCATTCTGCCTCTTCGATCGGTTAAGCGCC
65 GCACCCGAGGGGGA-CGGGTCAATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGTTAAGCGCC
* *
26703364 CGCACGCTCGTTTCATGGGTTGGCTTAG
129 CGTACGCTCGTTTCGTGGGTTGGCTTAG
* **
26703392 GCATATGGAGTTAATTCCATGTCTAAG
1 GCATACGGAGTTCTTTCCA-GTCTAAG
26703419 CATACGGAGC
Statistics
Matches: 270, Mismatches: 61, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
157 12 0.04
158 135 0.50
159 115 0.43
160 8 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCTTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCCGTAGCTGGATCGACAG
CACCCGAGGGGGACGGGTCAATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGTTAAGCGCCCG
TACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:26704140 original size:26 final size:26
Alignment explanation
Indices: 26704111--26704163 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26704101 GTTGACTTAG
26704111 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
**
26704137 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
26704163 G
1 G
26704164 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:26704839 original size:159 final size:158
Alignment explanation
Indices: 26704137--26704948 Score: 549
Period size: 158 Copynumber: 5.1 Consensus size: 158
26704127 CCTAGTCTAA
** * ** ** * * * **
26704137 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGATTGAAGGTTGCTG-CAGCAGGATTGGT
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGC-GACAGTAGGATCGAC
* * * ** * * * * * *
26704201 AGCACGCAGGGGAGACCGAGCCGATCCCCGCCTAGCGAATTCTGCCTCTCCGGCCGGTTGAGCAC
65 AGCACGCAGGGGGGACCGGGCTGATCCCCGGTTTGCGCATTATGCCTCTCCGACCAGCTGAGCAC
* * * * * * *
26704266 CCACACACTCATTTCATTGGTTGGCGTAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * ** ** * * *
26704295 GCATACGAAGTACATT-CCACGTCTAAGCCCCAG-TCGGACCGATGGTTGTGACAGCAGGGGATC
1 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAAACCGAGGGTTGCGACAGTA--GGATC
* * * * * ** *
26704358 GACAGCACGCAGAGGGGGGCCGGACTGGTCCCCGTTTTACGCATTATGCCTCTCCGGTCGGCTGA
62 GACAGCACGCAG-GGGGGACCGGGCTGATCCCCGGTTTGCGCATTATGCCTCTCCGACCAGCTGA
** * * *
26704423 GTGCCCGTATGCTCGTTTCATGGGTTGACTTAG
126 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
26704456 GCATACGGAGTTCATCCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCGACAGTAGGATCGACA
* * * * * *
26704521 GCACGCAGGGTGGACCGGGCCGATCCCCCGTTTGCACATTCTGCCTCTCCGACCAGCTGAGCGCC
66 GCACGCAGGGGGGACCGGGCTGATCCCCGGTTTGCGCATTATGCCTCTCCGACCAGCTGAGCACC
* * *
26704586 TGCACG-TCCGTTTTGTGGGTTGGCTTAG
131 CGCACGCT-CGTTTCGTGGGTTGACTTAG
* * ** * ** * * * * * *
26704614 GCATAGGGAGCTCATT-CCATGTCTAAGCCCCAG-TCAGACAAATGGTTGTGGCAGTGGGACCAA
1 GCATATGGAGTTCATTCCCA-GTCTAAG-ATCAGATCAAACCGAGGGTTGCGACAGTAGGATCGA
* * * * ** * *
26704677 CAGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGC
64 CAGCACGCAG-GGGGGACCGGGCTGATCCCCGGTTTGCGCATTATGCCTCTCCGACCAGCTGAGC
* * *
26704742 ACCCGCACGCTCATTTCGTAGGTTGACTTAT
128 ACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
26704773 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACGATAGTAGGATTGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCGACAGTAGGATCGACA
* * * * * *
26704838 GCACGTAGGGGGGACAGGG-TCAATCCCCGGTTTGCGCATTCTGCCTCTTCGACCAGCTGAACAC
66 GCACGCAGGGGGGACCGGGCT-GATCCCCGGTTTGCGCATTATGCCTCTCCGACCAGCTGAGCAC
* * *
26704902 CCGCACGCTTGTTTCGTGAGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAG
*
26704931 GCATATGGAATTCATTCC
1 GCATATGGAGTTCATTCC
26704949 ATGTCTGAGC
Statistics
Matches: 499, Mismatches: 139, Indels: 32
0.74 0.21 0.05
Matches are distributed among these distances:
157 9 0.02
158 235 0.47
159 131 0.26
160 21 0.04
161 100 0.20
162 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCGACAGTAGGATCGACA
GCACGCAGGGGGGACCGGGCTGATCCCCGGTTTGCGCATTATGCCTCTCCGACCAGCTGAGCACC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:26704840 original size:317 final size:316
Alignment explanation
Indices: 26704239--26704954 Score: 824
Period size: 317 Copynumber: 2.2 Consensus size: 316
26704229 CGCCTAGCGA
* * * * * * * * * * *
26704239 ATTCTGCCTCTCCGGCCGGTTGAGCACCCACACACTCATTTCATTGGTTGGCGTAGGCATACGAA
1 ATTCTGCCTCTCCGACCAGCTGAACACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
* * ** * *
26704304 GTACATTCCACGTCTAAGCCCCAGTCGGACCGATGGTTGTGACAGCAGGGGATCGACAGCACGCA
66 GT-CATTCCATGTCTAAGCCCCAGTCAGACAAATGGTTGTG--AGCAGGGGACCAACAGCACGCA
* * ** * ** * *
26704369 GAGGGGGGCCGGACTGGTCCCCGTTTTACGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGTATG
128 GAGGGGGACCGGACTGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCACG
* * *
26704434 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCAGATCAAACCGAG
193 CTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCAAACCGAG
* * * *
26704499 GGTTGCGACAGCAGGATCGACAGCACGCAGGGTGGACCGGGCCGATCCCCCGTTTGCAC
258 GGTTACGACAGCAGGATCGACAGCACGCAGGGGGGACAGGGCCAATCCCCCGTTTGCAC
* * * * *
26704558 ATTCTGCCTCTCCGACCAGCTGAGCGCCTGCACG-TCCGTTTTGTGGGTTGGCTTAGGCATAGGG
1 ATTCTGCCTCTCCGACCAGCTGAACACCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATACGG
26704622 AGCTCATTCCATGTCTAAGCCCCAGTCAGACAAATGGTTGTG-GCAGTGGGACCAACAGCACGCA
65 AG-TCATTCCATGTCTAAGCCCCAGTCAGACAAATGGTTGTGAGCAG-GGGACCAACAGCACGCA
* * * * *
26704686 GAGGGGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCACCCGCACG
128 GAGGGGGACCGGACTGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCACG
* * * *
26704751 CTCATTTCGTAGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAG
193 CTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCAAACCGAG
* * * * * * *
26704816 GGTTACGATAGTAGGATTGACAGCACGTAGGGGGGACAGGGTCAATCCCCGGTTTGCGC
258 GGTTACGACAGCAGGATCGACAGCACGCAGGGGGGACAGGGCCAATCCCCCGTTTGCAC
* * * *
26704875 ATTCTGCCTCTTCGACCAGCTGAACACCCGCACGCTTGTTTCGTGAGTTGGCTTAGGCATATGGA
1 ATTCTGCCTCTCCGACCAGCTGAACACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG-
*
26704940 ATTCATTCCATGTCT
65 AGTCATTCCATGTCT
26704955 GAGCATACGG
Statistics
Matches: 331, Mismatches: 61, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
316 4 0.01
317 239 0.72
318 3 0.01
319 84 0.25
320 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (316 bp):
ATTCTGCCTCTCCGACCAGCTGAACACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
GTCATTCCATGTCTAAGCCCCAGTCAGACAAATGGTTGTGAGCAGGGGACCAACAGCACGCAGAG
GGGGACCGGACTGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCACGCTC
ATTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCAGACCAAACCGAGGGT
TACGACAGCAGGATCGACAGCACGCAGGGGGGACAGGGCCAATCCCCCGTTTGCAC
Found at i:26705683 original size:26 final size:26
Alignment explanation
Indices: 26705653--26705705 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26705643 GTTGACTTAG
26705653 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
26705679 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26705705 G
1 G
26705706 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26706057 original size:26 final size:26
Alignment explanation
Indices: 26706021--26706073 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26706011 ATTGACTTAG
26706021 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
26706047 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26706073 G
1 G
26706074 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26707019 original size:26 final size:26
Alignment explanation
Indices: 26706989--26707041 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26706979 GTTGACTTAG
26706989 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
* *
26707015 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAGTCTAA
26707041 G
1 G
26707042 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAGTCTAA
Found at i:26707380 original size:26 final size:26
Alignment explanation
Indices: 26707344--26707396 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26707334 GTTGACTTAG
26707344 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26707370 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26707396 G
1 G
26707397 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26707574 original size:355 final size:342
Alignment explanation
Indices: 26706916--26707713 Score: 902
Period size: 355 Copynumber: 2.3 Consensus size: 342
26706906 ACCACCCATT
* * * ** * *
26706916 CGATCCCCGGCTTGCGCATCATGCCTCTCTGGTCGATTGAGTGCCCGCACGCTCGTTTCATGGGT
1 CGATCCCCGGCTTACG-ATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGT
** *
26706981 TGACTTAGGCATATAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCA
65 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * * ** *
26707046 GACCGGATCGAGGGTTGCGGTAGCAGGATCTACAGTACGCAGGGGGGATTGGGCCGATTCCTGGC
130 GACCGAACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGAGGGACCGAGCCGATTCCTGGC
* * *
26707111 TTACGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCA
195 CTACGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCA
*
26707176 TACGGAGTACATTCAATGTCTAAGCCCTAGCCAGACCGAGGGTTGCGAGAGCAGGACCAGTAGCA
260 TACGGAGTACAGTCAATGTCTAAGCCCTAGCCAGACCGAGGGTT------G-AGG--C--T-GCA
*
26707241 GGATCGGCAGCTCGCAGAGGGGGACCAGGC
313 GGATCGGCAGCACGCAGAGGGGGACCAGGC
* * *
26707271 TGATCCCCAGCTTACGTATTATGCCTCTCCGATCGGCTGAGTGCCCGCACGCTCATTTCGTGGGT
1 CGATCCCCGGCTTACG-ATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGT
26707336 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
65 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * *
26707401 GATCGAACCAAGGGTTGCGGCAGTAGGATCGACAGCACGCTGGAGGGACCGAGCCGA-TCC-GCA
130 GACCGAACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGAGGGACCGAGCCGATTCCTG--
* ** * * *
26707464 GCCTGCGCATTCTGCCTCTCCGATTGGCTGAGCACCTGCACGCCCGTTTCGTGGGTTGGCTTAGG
193 GCCTACGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGG
* * * ** * * *
26707529 CATAGGGAGCT-CAGTCCATGTCTAAGCCCTAGCCGGATTGAGGGTTGTGGCTGCGGGATCGGTA
258 CATACGGAG-TACAGTCAATGTCTAAGCCCTAGCCAGACCGAGGGTTGAGGCTGCAGGATCGGCA
* * *
26707593 GCACGTAGAGGGGGTCCTGGC
322 GCACGCAGAGGGGGACCAGGC
* * * * *
26707614 CGATCCTCGGCTTGCACG-TTATGCCTCTTCGGCCGGCTCAGTGCCCGCATGCTCATTTCGTGGG
1 CGATCCCCGGCTT--ACGATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGG
* *
26707678 TTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
64 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
26707714 TTGGACCGGA
Statistics
Matches: 379, Mismatches: 59, Indels: 22
0.82 0.13 0.05
Matches are distributed among these distances:
343 112 0.30
344 1 0.00
345 3 0.01
346 1 0.00
348 2 0.01
349 1 0.00
353 1 0.00
354 3 0.01
355 254 0.67
356 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.24
Consensus pattern (342 bp):
CGATCCCCGGCTTACGATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCGAACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGAGGGACCGAGCCGATTCCTGGCC
TACGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCAT
ACGGAGTACAGTCAATGTCTAAGCCCTAGCCAGACCGAGGGTTGAGGCTGCAGGATCGGCAGCAC
GCAGAGGGGGACCAGGC
Found at i:26707869 original size:157 final size:157
Alignment explanation
Indices: 26707427--26707871 Score: 412
Period size: 157 Copynumber: 2.8 Consensus size: 157
26707417 GCGGCAGTAG
* * * * * * *
26707427 GATCGACAGCACGCTGGAGGGACCGAGCCGATCCGC-AGCCTGCGCATTCTGCCTCTCCGATTGG
1 GATCGACAGCACGCAGGGGGGACCAAGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGGTCGG
* * * * * * *
26707491 CTGAGCACCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCAGTCCATGTCTAAGC
65 CTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-
** ** * **
26707556 CCTAGCCGGATTGAGGGTTGTGGCTGCGG
129 CCTAGCCGGACAGAGGGTTGACGATGCAA
** * * ** * * * * * * *
26707585 GATCGGTAGCACGTAGAGGGGGTCCTGGCCGATCCTCGGCTTGCACGTTATGCCTCTTCGGCCGG
1 GATCGACAGCACGCAG-GGGGGACCAAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGG
* * * * * *
26707650 CTCAGTGCCCGCATGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG
65 CTAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
* *
26707714 -TTGGACCGGACAGAGGGTT-ACGATAGCAA
129 CCTAG-CCGGACAGAGGGTTGACGAT-GCAA
*
26707743 GATCGACAGCACGCAGGGGGGACCAAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGC
1 GATCGACAGCACGCAGGGGGGACCAAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGC
*
26707808 TAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGC
66 TAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
26707872 ATACAGAGCT
Statistics
Matches: 220, Mismatches: 60, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
156 3 0.01
157 94 0.43
158 39 0.18
159 81 0.37
160 3 0.01
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (157 bp):
GATCGACAGCACGCAGGGGGGACCAAGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGC
TAAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
TAGCCGGACAGAGGGTTGACGATGCAA
Found at i:26707884 original size:26 final size:26
Alignment explanation
Indices: 26707844--26707896 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26707834 GTTGGCTTAG
* *
26707844 GCATACGGAGTTCATTCCATA-TCTAA
1 GCATACAGAGCTCATTCC-TAGTCTAA
26707870 GCATACAGAGCTCATTCCTAGTCTAA
1 GCATACAGAGCTCATTCCTAGTCTAA
26707896 G
1 G
26707897 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCTAGTCTAA
Found at i:26709425 original size:858 final size:855
Alignment explanation
Indices: 26707769--26709462 Score: 2575
Period size: 858 Copynumber: 2.0 Consensus size: 855
26707759 GGGGGACCAA
* * * **
26707769 GTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCGCACGCTCGTTTCGTGG
1 GTCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTAAGCACCCGCACGCTCGTTTAATGG
* * *
26707834 GTTGGCTTAGGCATACGGAGTTCATTCCATATCTAAGCATACAGAGCTCATTCCTAGTCTAAGAT
66 GTTGGCTTAGGCATACAGAGTTCATTCCATATCTAAGCATACAGAGCTCATTCCCAATCTAAGAT
* * *
26707899 TTTGAGCCACGGTGCATATGCTGGGCTCGAACATGTGCTGGTGCCACATTTTTTTCACCCGGGGC
131 TTTGAGCCACAGTGCACATGCCGGGCTCGAACATGTGCTGGTGCCACATTTTTTTCACCCGGGGC
* *** * *
26707964 ACCATCATCGGAGCATCGCGAAGACCCTAATTGGCGGCATGGTGGTTCCAACGATTGGGGGGGCC
196 ACCATCATCGAAGCATCGCGAAGACCCTAACCAGCGACATGGGGGTTCCAACGATTGGGGGGGCC
* *
26708029 GGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCC
261 GGGGATGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
26708094 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAG
326 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAG
* *
26708159 TAGCCATTAAAGTGTCTAGAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCA
391 CAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCA
* * * *
26708224 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTGTACCAAATTTGG
456 AGTTTTTAGCTAAATTTTTTTGTCCATGCCAAAAAAAATACAAGGATCACCTCTACCAAATTTAG
* * * *
26708289 GGGCAAAAGTCTTTCTAAAAAAATTTAAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGA
521 GGACAAAACTCTTTCTAAAAAAATTAAAAAAAATCCCGAATCGCAAAAAGTTTCAAAAATCATGA
26708354 AAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTACGAA
586 AAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTACGAA
*
26708419 TTTACAAGCCATAAAAATGGCATTGGCATGACTGAAATATGAAGATGTGCTTGAACCCACCTACC
651 TTTACAAGCCATAAAAATGGCATTGGCATGACAGAAATATGAAGATGTGCTTGAACCCACCTACC
* * * **
26708484 ACCTGTTCGATCCTCGACTTACGCATCCTGCCTCTCTGGTCAGCTGGGCACTTGCACGCTCCTTT
716 ACCTGTTCGATCCCCGACTTACGCATCCTGCCTCGCTGGTCAGCTGAGCACCCGCACGCTCCTTT
** ** * * *
26708549 TGTGGGTTGATTTAGGCATATAGAGTTCATCTCCAGTCTAAGCATATGGAGTTCATCCTTAGTCT
781 CATGGGTTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCTTAGTCT
26708614 CTTCGATCAG
846 CTTCGATCAG
* * * * *
26708624 GTCGATCCCCGGCTTGTGCATTATGCCTCTCCGATCGGTTGAGCACCTGCACGCTCGTTTAATGG
1 GTCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTAAGCACCCGCACGCTCGTTTAATGG
*
26708689 GTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAC-GAAGCTCATTCCCAATCTAAGA
66 GTTGGCTTAGGCATACAGAGTTCATTCCATATCTAAGCATACAG-AGCTCATTCCCAATCTAAGA
* ** * * *
26708753 TTTTGAGCCACAGTGGACATGCCGGGCTCGGGCATGTGCTGGTGCTACATTTTTTTCGCCTGGGG
130 TTTTGAGCCACAGTGCACATGCCGGGCTCGAACATGTGCTGGTGCCACATTTTTTTCACCCGGGG
* * * * *
26708818 CACCATCGTCGAAGCATCGCCGGAGAGCCTAACCAGCGACATTGGGGGTTTCGACGATTGGGGGG
195 CACCATCATCGAAGCATCG-CGAAGACCCTAACCAGCGACA-TGGGGGTTCCAACGATTGGGGGG
* * *
26708883 GTCGGGGATGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGGCCTTATATTGGCCCCCTAT
258 GCCGGGGATGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
**
26708948 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGC
323 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGC
26709013 CAGCAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACT
388 CAGCAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACT
26709078 TCAAGTTTTTAAGCTAAATTTTTTTGTCCATGCCAAAAAAAATACAAGGATCACCTCTACCAAAT
453 TCAAGTTTTT-AGCTAAATTTTTTTGTCCATGCCAAAAAAAATACAAGGATCACCTCTACCAAAT
* * **
26709143 TTAGGGATAAAACTCTTTGTAAAAAAATTAAAAAAAATCTTGAA-CAGCAAAAAGTTTCAAAAAT
517 TTAGGGACAAAACTCTTTCTAAAAAAATTAAAAAAAATCCCGAATC-GCAAAAAGTTTCAAAAAT
* *
26709207 CATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGAGCATTGT
581 CATGAAAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGT
* * *
26709272 ATGAATTTGCAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCAC
646 ACGAATTTACAAGCCATAAAAATGGCATTGGCATGACAGAAATATGAAGATGTGCTTGAACCCAC
* * * * * *
26709337 CTACCACCCT-TTTGATCCCCGGCTTGCGTATCCTGCCTCGCTGGTCGGCTGAGCGCCCGCACGC
711 CTACCA-CCTGTTCGATCCCCGACTTACGCATCCTGCCTCGCTGGTCAGCTGAGCACCCGCACGC
* *
26709401 TCGTTTCATGGGTTGACCTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAT
775 TCCTTTCATGGGTTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAT
26709463 TCCCAGTTTA
Statistics
Matches: 751, Mismatches: 82, Indels: 9
0.89 0.10 0.01
Matches are distributed among these distances:
854 1 0.00
855 186 0.25
856 15 0.02
857 216 0.29
858 330 0.44
859 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (855 bp):
GTCGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGCTAAGCACCCGCACGCTCGTTTAATGG
GTTGGCTTAGGCATACAGAGTTCATTCCATATCTAAGCATACAGAGCTCATTCCCAATCTAAGAT
TTTGAGCCACAGTGCACATGCCGGGCTCGAACATGTGCTGGTGCCACATTTTTTTCACCCGGGGC
ACCATCATCGAAGCATCGCGAAGACCCTAACCAGCGACATGGGGGTTCCAACGATTGGGGGGGCC
GGGGATGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAG
CAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCA
AGTTTTTAGCTAAATTTTTTTGTCCATGCCAAAAAAAATACAAGGATCACCTCTACCAAATTTAG
GGACAAAACTCTTTCTAAAAAAATTAAAAAAAATCCCGAATCGCAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGGGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTACGAA
TTTACAAGCCATAAAAATGGCATTGGCATGACAGAAATATGAAGATGTGCTTGAACCCACCTACC
ACCTGTTCGATCCCCGACTTACGCATCCTGCCTCGCTGGTCAGCTGAGCACCCGCACGCTCCTTT
CATGGGTTGACCTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCTTAGTCT
CTTCGATCAG
Found at i:26709452 original size:26 final size:26
Alignment explanation
Indices: 26709422--26709474 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26709412 GTTGACCTAG
26709422 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26709448 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26709474 G
1 G
26709475 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26710128 original size:26 final size:26
Alignment explanation
Indices: 26710098--26710150 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26710088 GTTGACTTAG
26710098 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
26710124 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26710150 G
1 G
26710151 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26710283 original size:184 final size:183
Alignment explanation
Indices: 26709940--26710287 Score: 405
Period size: 184 Copynumber: 1.9 Consensus size: 183
26709930 TTTGACTTAT
* * * *
26709940 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAAGGTTACGATAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTACGACAGTAGGATCGAGA
* * ** *
26710005 CACACAGGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCC
66 CACACAGGAGGGGACCAGGACGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACC
*
26710070 TGCACGCTCATTTCATAGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
131 CGCACGCTCATTT-ATAGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
* * * * *
26710124 GCATACGGAGTTCGTTCCCAGTCTAAGATC-GAACCGGATCGAGGGTTGCGACAGTTGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAAGGTTACGACAGTAGGATC-GA
* * * * * **
26710188 GGCACGCA-GAGGGGACTAGGACGATGCTCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCA
64 GACACACAGGAGGGGACCAGGACGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCA
* * *
26710252 CCCGCACGTTCGTTT-TGAGGGTTGGCTTAGGCATAC
129 CCCGCACGCTCATTTAT-A-GGTTGACTTAGGCATAC
26710288 GAAGTACATT
Statistics
Matches: 135, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
182 1 0.01
183 2 0.01
184 126 0.93
185 6 0.04
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTACGACAGTAGGATCGAGA
CACACAGGAGGGGACCAGGACGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACC
CGCACGCTCATTTATAGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
Found at i:26710418 original size:13 final size:13
Alignment explanation
Indices: 26710402--26710429 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26710392 TACGCATTAT
26710402 GCCTCTCCGATCG
1 GCCTCTCCGATCG
26710415 GCCTCTCCGATCG
1 GCCTCTCCGATCG
26710428 GC
1 GC
26710430 TGAGCGCCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.46, G:0.25, T:0.21
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:26710496 original size:26 final size:26
Alignment explanation
Indices: 26710466--26710518 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26710456 GTTGACTTAG
26710466 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
26710492 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
26710518 G
1 G
26710519 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:26710857 original size:26 final size:26
Alignment explanation
Indices: 26710809--26710861 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26710799 GTCGACTTAG
26710809 GCATATGGAGCTCATCCCGAGTCTAA
1 GCATATGGAGCTCATCCCGAGTCTAA
* *
26710835 GCATATGGAGTTTATTCCC-AGTCTAA
1 GCATATGGAGCTCA-TCCCGAGTCTAA
26710861 G
1 G
26710862 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATATGGAGCTCATCCCGAGTCTAA
Found at i:26711098 original size:342 final size:341
Alignment explanation
Indices: 26710013--26711177 Score: 1268
Period size: 368 Copynumber: 3.3 Consensus size: 341
26710003 TACACACAGG
* * * * * * * *
26710013 GGGGGACCAGG-TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCTGCACGC
1 GGGGGACCGGGCT-GATCCCTGGCTTACGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGC
* *
26710077 TCATTTCATAGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCGTTCC
65 TCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT-CCCAGTCTAAGCATACGGAGTTCATTCC
* * *
26710142 CAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGTTGGATCGGCGGCACGC-AGAGGGGA-CT
129 CAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGTAGGATCGGCAGCACGCAAG-GGGGATCG
* * ** *
26710205 AGGACGATGCTCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGTTC-GTTTTG
193 A-GCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCACTTGCACG-TCGGTTTCG
* * * ** *
26710269 AGGGTTGGCTTAGGCATACGAAG-TACATTCCACATCTAAGCCCCAGTCGGATCGAGGGTTGTGG
255 TGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGG
* *
26710333 TAGCAGGACCAGCAGCGGGTTCGGTAGGACGCAGA
319 CAGC-GG----G-A-C----T-GGTAGCACGCAGA
* *
26710368 GGGGGACCGGGCTGATCCCTGGCCTACGCATTATGCCTCTCCGATCGGCCTCTCCGATCGGCTGA
1 GGGGGACCGGGCTGATCCCTGGCTTACGCATTATGCCTCT----TC-G-------G-TCGGCTCA
*
26710433 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATAC
53 GCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCC-AGTCTAAGCATAC
26710498 GGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGTAGGATCGGCAGCACGC
117 GGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGTAGGATCGGCAGCACGC
* * *
26710563 AGGGGGGATCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGTTGAGCACCTT-CAC
182 AAGGGGGATCGAGCCGATCCC-GGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCA-CTTGCAC
* *
26710627 GTCGGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTACATGTCTAAGCCCCAACCGGATCGA
245 GTCGGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCGGATCGA
* * * * *
26710692 TGGTTGTGGCAGCGTGCCTGATAGCACACAGA
310 GGGTTGTGGCAGCGGGACTGGTAGCACGCAGA
** * * *
26710724 GGGGGACCGGGCCT-ATCTTTGGCTTACGCATTATGCCTCTTCGGTCGGCTCAGTGCCCACATGC
1 GGGGGACCGGG-CTGATCCCTGGCTTACGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGC
** * ** * * *
26710788 TCATTTTGTGGGTCGACTTAGGCATATGGAGCTCATCCCGAGTCTAAGCATATGGAGTTTATTCC
65 TCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCC-AGTCTAAGCATACGGAGTTCATTCC
* * *
26710853 CAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGTAGGATC-GCAGCACGCAAGGGGGATCGA
129 CAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGTAGGATCGGCAGCACGCAAGGGGGATCGA
* * * * *
26710917 GCCGATCCCAGGCTTACACATTCTGCCTCTCCGATCGGCTGAGCACTTGCACGCCGGTTTCGTGG
194 GCCGATCCC-GGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCACTTGCACGTCGGTTTCGTGG
*
26710982 GTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCC-GAACTGAGGGTTGTGGCAG
258 GTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCGGATC-GAGGGTTGTGGCAG
26711046 CGGGACTGGTAGCACGCAGA
322 CGGGACTGGTAGCACGCAGA
* * * * *
26711066 GGGGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTTTGGCCGGCTCATCGCCTGCACGCT
1 GGGGGACCGGGCTGATCCCTGGCTTACGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCT
* ** * *
26711131 CGTTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
66 CATTTCATGGGTTGACTTAGGCATACAGAGTTCA-TCCCAGTCTAAG
26711178 ATCGGACCGG
Statistics
Matches: 695, Mismatches: 89, Indels: 65
0.82 0.10 0.08
Matches are distributed among these distances:
341 8 0.01
342 234 0.34
343 115 0.17
344 1 0.00
351 1 0.00
352 2 0.00
355 33 0.05
356 45 0.06
357 3 0.00
359 1 0.00
360 1 0.00
361 1 0.00
363 1 0.00
367 9 0.01
368 236 0.34
369 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (341 bp):
GGGGGACCGGGCTGATCCCTGGCTTACGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGCACGCT
CATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCGAACCGGATCGAGGGTTGCGACAGTAGGATCGGCAGCACGCAAGGGGGATCGAGC
CGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCACTTGCACGTCGGTTTCGTGGGTT
GGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGGG
ACTGGTAGCACGCAGA
Found at i:26711196 original size:159 final size:158
Alignment explanation
Indices: 26710835--26711334 Score: 456
Period size: 159 Copynumber: 3.2 Consensus size: 158
26710825 CCGAGTCTAA
* * *
26710835 GCATATGGAGTTTATTCCCA-GTCTAAGATTGGACCGGACCGAGGGTTGCGACAGTAGGATCGCA
1 GCATATGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATGGCA
* * * * * ** * *
26710899 GCACGCA-AGGGGGATCGAGCCGATCCCAGGCTTACACATTCTGCCTCTCCGATCGGCTGAGCAC
65 GCACGCAGAGGGGGACCGGGCTGATCCCAGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGC
* * *
26710963 TTGCACGC-CGGTTTCGTGGGTTGGCTTAG
130 CTGCACGCTC-GTTTTGTGGGTTGACTTAG
* * * ** * * * * ** *
26710992 GCATAGGGAGCTCATTCCATGTCTAAG-CCCCAGCCGAACTGAGGGTTGTGGCAGCGGGACTGGT
1 GCATATGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGCGACAGTAGGA-TGGC
* * ** * *
26711056 AGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTTTGGCCGGCTCATCG
64 AGCACGCAGAGGGGGACCGGGCTGATCCCAGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACG
*
26711121 CCTGCACGCTCGTTTTGTGGGTTGACTTAT
129 CCTGCACGCTCGTTTTGTGGGTTGACTTAG
* * *
26711151 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCAAGGGTTGCGACAGTAGGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGAT-GGC
* * * * * * *
26711215 AGCACGCAGA-AGGGACCGGGTTGATCCCCGACTAGCGCATTCTGCCACTCCGGCCAGCTGAACG
64 AGCACGCAGAGGGGGACCGGGCTGATCCCAGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACG
* * * *
26711279 CCCGTACGCTCGTTTTATGAGTT-AGCTTAG
129 CCTGCACGCTCGTTTTGTGGGTTGA-CTTAG
26711309 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
26711335 CCATAAGTAG
Statistics
Matches: 268, Mismatches: 65, Indels: 19
0.76 0.18 0.05
Matches are distributed among these distances:
156 4 0.01
157 44 0.16
158 97 0.36
159 117 0.44
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATGGCAG
CACGCAGAGGGGGACCGGGCTGATCCCAGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGCC
TGCACGCTCGTTTTGTGGGTTGACTTAG
Found at i:26712011 original size:26 final size:26
Alignment explanation
Indices: 26711980--26712031 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26711970 TGACTTAGGC
26711980 ATACAGAGTTCA-TCCCTAGTCTAAGA
1 ATACAGAGTTCATTCCC-AGTCTAAGA
*
26712006 ATACAGAGTTTATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
26712032 TCGGATCGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:26712515 original size:26 final size:26
Alignment explanation
Indices: 26712479--26712531 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26712469 GTTGACTTAG
*
26712479 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
*
26712505 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
26712531 G
1 G
26712532 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:26712877 original size:26 final size:26
Alignment explanation
Indices: 26712847--26712899 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26712837 GTTGACTTAG
*
26712847 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
26712873 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26712899 G
1 G
26712900 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26713244 original size:26 final size:26
Alignment explanation
Indices: 26713214--26713265 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26713204 GTTGACTTAG
26713214 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
26713240 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
26713266 TATCCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:26713281 original size:368 final size:364
Alignment explanation
Indices: 26712428--26713820 Score: 1446
Period size: 368 Copynumber: 3.8 Consensus size: 364
26712418 TACACATTCT
** * * *
26712428 GCCTCTCCGTCCGACTGAGTGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCG-CCGACTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * **
26712493 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCAGA-CAGGATCAAGGGTTGCGGT
65 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GATCGAGGGTTGCGAC
* * * ** *
26712557 AGTAGGATCGGCAGCATGCAGGGGGATCGGACCAATCAGCAGCTTGCGCATTCTACCTCTCC-AG
129 AGCAGGATCGACAGCATGCAGGGGGACCGGACCAATCCTCGGCTTGCGCATTCTACCTCTCCGA-
* *
26712621 CTGGCTGAGTGCCCGCACGCTCGTTTCTTGGGTTGGCTTAGGCATATGGAGTACATTCCACGTCT
193 CTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTACATTCCATGTCT
* * ** * **
26712686 AAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGATCGACAGCGGGATCGACAACACATAGA-AG
258 AAGCCCCAG-CGGACCGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGACAGCACGCAGAGA-
* * * *
26712750 GGGACCGGGCTAATCCCCTAGCTTGCT-CATTATGCCTTTCCGATTG
321 GGGATCGGGCTGATCCCC-GGCTTG-TGCATTATGCCTTT-CGATCG
* ** * *
26712796 ACCTC-CCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
1 GCCTCTCC--GCCGACTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * *
26712860 ATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTACGAC
64 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGAC
* * * * *
26712925 AGCAGGATCGACAGCATGCAGGAGGATCGCACCAATCCTCGGCTTGTGCATTCTGCCTCTCCGA-
129 AGCAGGATCGACAGCATGCAGGGGGACCGGACCAATCCTCGGCTTGCGCATTCTACCTCTCCGAC
* * **
26712989 TCGGCTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTACATTCCATGTCT
194 T-GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTACATTCCATGTCT
* * * * *
26713054 AAGCCCCAGTCGGATCAAAGGTTGTGGCAGTAGGACCGGTAGCGGGATCGATAGCACGCAGAGAG
258 AAGCCCCAG-CGGACCGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGACAGCACGCAGAGAG
26713119 GGATCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTTCGATCG
322 GGATCGGGCTGATCCCCGGCTTGTGCATTATGCCT-TTCGATCG
* * *
26713163 GCCTCTCCGACCGACTGAACGCCCGTATGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCA
1 GCCTCTCCG-CCGACTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * *
26713228 TCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCCAGACCAGATCGACGGTTGCGAC
65 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGACCAGATCGAGGGTTGCGAC
* * ** * * * * * * *
26713293 GGCTGGATCGGTAACATGTAAGGGGGACC-GAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCA
129 AGCAGGATCGACAGCATG-CAGGGGGACCGGA-CCAATCCTCGGCTTGCGCATTCTACCTCTCCG
* * *
26713357 ACCT-GCTGAGCGCCCGCACGTTCATTTCGTGGGTTGGCTTAGGCATATGGAGTACATTCCATGT
192 A-CTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTACATTCCATGT
* * * * * *
26713421 CTAAGCCCCAGCGAGACCGAGGGCTATGGCAGTAGCATCGGTAGCGGGATCGACAGCACGCAAAG
256 CTAAGCCCCAGCG-GACCGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGACAGCACGCAGAG
* * ** *
26713486 GGGGATCGGGCTGATCCTCGGCTTACGTATTATGCCTTTC---CG
320 AGGGATCGGGCTGATCCCCGGCTTGTGCATTATGCCTTTCGATCG
* * ** * *
26713528 G----T-CG--G-CT-AAGTGCTCGCACGCTCATTTTGTGGGTTGACCTGGGCATACGGAGTTCA
1 GCCTCTCCGCCGACTGAA-CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
* *
26713584 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAAAACGAGGGTTGCGAC
65 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGCGAC
* * * * * * *
26713648 AGCAAGATCGACAGCATGTAGGGGGGACCGGGCCGATCCTCGACTTGCACATTCTACGTCTCCGA
129 AGCAGGATCGACAGCATGCA-GGGGGACCGGACCAATCCTCGGCTTGCGCATTCTACCTCTCCGA
* * * ** * *
26713713 CTGGTTGAGTGCCTGTACG-TCCGTTTCGTGGGTTCCCTTAGGCATAGGGAGCT-CATTGCATGT
193 CTGGCTGAGTGCCCGCACGCT-CGTTTCGTGGGTTGGCTTAGGCATATGGAG-TACATTCCATGT
* *
26713776 CTAAGCCCCAGCTGGATCGAGGGTTCTGGCAGCAGGACCGGTAGC
256 CTAAGCCCCAGC-GGACCGAGGGTTGTGGCAGCAGGACCGGTAGC
26713821 ACACAGAGGG
Statistics
Matches: 862, Mismatches: 139, Indels: 61
0.81 0.13 0.06
Matches are distributed among these distances:
354 5 0.01
355 150 0.17
356 81 0.09
357 1 0.00
360 2 0.00
361 1 0.00
365 3 0.00
366 2 0.00
367 113 0.13
368 325 0.38
369 178 0.21
371 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (364 bp):
GCCTCTCCGCCGACTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAG
CAGGATCGACAGCATGCAGGGGGACCGGACCAATCCTCGGCTTGCGCATTCTACCTCTCCGACTG
GCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTACATTCCATGTCTAAG
CCCCAGCGGACCGAGGGTTGTGGCAGCAGGACCGGTAGCGGGATCGACAGCACGCAGAGAGGGAT
CGGGCTGATCCCCGGCTTGTGCATTATGCCTTTCGATCG
Found at i:26713606 original size:26 final size:26
Alignment explanation
Indices: 26713570--26713622 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26713560 GTTGACCTGG
26713570 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26713596 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26713622 G
1 G
26713623 ATCGAACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26715005 original size:26 final size:26
Alignment explanation
Indices: 26714976--26715028 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26714966 GTTGGCTTAG
*
26714976 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGCTCATTCCCA-GTCTAA
*
26715002 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
26715028 G
1 G
26715029 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:26715722 original size:26 final size:26
Alignment explanation
Indices: 26715686--26715737 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26715676 GTTGACTTAG
*
26715686 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
**
26715712 GCATACGGAGTTCATTTCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
26715738 TATCAGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:26715817 original size:894 final size:897
Alignment explanation
Indices: 26713914--26715897 Score: 2736
Period size: 894 Copynumber: 2.2 Consensus size: 897
26713904 TGACTTATAA
* * * * * * *
26713914 ATACGGAGTTCATTCCCAGTCTAAGATCTGAGCAGACCAAGGGTTGCAGCAGCAGGATCGACAGT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGATAGC
* * * * *
26713979 GCACAGGGGGGACCAGGTCCATCCCCGGCTTGCGCATTTTGCCTCTCCGATCGGATGAACGCCCG
66 ACACAAGGGGGA-CGGGTCCATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGATGAGCGCCCG
* * *
26714044 CACGCTCGTTTCGTGTGTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGCTC
130 CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGCTC
* *
26714109 ATTCCCAGTCTAGAATTTTGAGCCACGGTGCACATGTTGGGCTCAGGAATGTGCTAGTGCCGTAT
195 ATTCCCAGTCTAGAATTTTGAGCCACGGTGCACATGCTGGGCTCAGGAATGTGCTAGTGCCGCAT
* * *
26714174 TTTTTTCACTCGGGGCACCATCGTCGGAGCATCGTCGGAGAGCCTAATCGGCGGCATTGGGGGTT
260 TTTTTTCACCCGAGGCACCA-C-TC-G-G-A-CG-CGGAGAGCCTAATCGGCGGCATTGAGGGTT
* * *** *
26714239 CCGACGATTGGGGGGCCGGGTGGTGTGCGCTCATGATGTGCGATGGGTGCTAGTACTTGGCCCTT
318 CCGACGATTGGAGGGCCGGGTAGTGTAAACACATGATGTGCGATGGGTGCTAGTACTTGGCCCTT
26714304 ATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
383 ATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
26714369 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAACGATCAC
448 TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGATCAC
* *
26714434 AAAATCTTCTCCACTTCGAGTTTTTAGCTGACTTTTTTTCTGCATGCCAAAAAAAATGCAAGGAT
513 AAAATCTTCTCCACTTAGAGTTTTTAGCTGACTTTTTTTCTGCATGCCAAAAAAAATACAAGGAT
* * *
26714499 CACCTCTACCAAATTTACGGACAAAACTCTTTCTAAAAAAATTTAAAAAAATCCCGAACCGTAAA
578 AACCTCTACCAAATTTACGGACAAAACTCTGTCTAAAAAAATTTAAAAAAATCCCAAACCGTAAA
*
26714564 AAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTT
643 AAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTT
* * * * * **
26714629 AGGGGACCCTTGTATGAATTTACAAGCCATAAAAATTGCATTGGGATGGCAGAAATATGAAGATG
708 ACGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGATG
* *
26714694 TGCTTGAACCCACCTACCACCCGTTCGATCCACGACTTGCGCATCCTGCCTCTCTTGTCGGCTGA
773 TGCTCGAACCCACCTACCACCCGTTCGATCCACGACTTGCGCATCCTGCCTCTCTGGTCGGCTGA
* *
26714759 GCATCCGCACGCCCGTTTCTTGGGTTCACTTAGGCATATGGAGTTCATCTCCAGTCTAAGC
838 G-ATCCGCACGCCCATTTCGTGGGTTCACTTAGGCATATGGAGTTCATCTCCAGTCTAAGC
* * * * * *
26714820 ATACGAAGTTCATTCCCAGTCTAAGATCACACCGCATCGAGGGCTAC-GACAGCAGGATCGGTAG
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAG-CAGCAGGATCGATAG
** ** * * *
26714884 CAC-GTAGCATGGACTGGGTCAATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCT
65 CACACAAG-GGGGAC-GGGTCCATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGATGAGCGCC
* * * *
26714948 TGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGC
128 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGC
* * *
26715013 TCATTCCCAGTCTA-AGATTTTGAGCCATGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCG
193 TCATTCCCAGTCTAGA-ATTTTGAGCCACGGTGCACATGCTGGGCTCAGGAATGTGCTAGTGCCG
*
26715077 CATTTTTTTCGCCCGAGGCACCA-TC-G-C-CGGAGAGCCTAA-CAGGCGGCATTGAGGGTTCCG
257 CATTTTTTTCACCCGAGGCACCACTCGGACGCGGAGAGCCTAATC-GGCGGCATTGAGGGTTCCG
*
26715137 ACGATTGGCAGGGCCGGG-AGTGTAAACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
321 ACGATTGG-AGGGCCGGGTAGTGTAAACACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTAT
* *
26715201 ATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
385 ATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * * *
26715266 ATAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGGAATGGGGATACTTTTTTCAAACGGTCACAA
450 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGATCACAA
* * *
26715331 AATCTTCTCCACTTAGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATAA
515 AATCTTCTCCACTTAGAGTTTTTAGCTGACTTTTTTTCTGCATGCCAAAAAAAATACAAGGATAA
** *** **
26715396 CCTCTACCAAATTTGGGGA-AAAACTCTGTC-AAAATTTTTTTTTAAAAATCCCAAACCGTAAAA
580 CCTCTACCAAATTTACGGACAAAACTCTGTCTAAAA-AAATTTAAAAAAATCCCAAACCGTAAAA
** *
26715459 AGTTTCAAATGTCGTGAAAAATAAAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTA
644 AGTTTCAAAAATCATGAAAAATAAAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTA
* *
26715524 CGGGACCATTGTACGAATTTACAAGGCATAAAAATGGCATTGGCACAGCAGAAATATGAATATGT
709 CGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGATGT
* * * *
26715589 GCTCGAATCCACCTACCACCTGTTCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAG
774 GCTCGAACCCACCTACCACCCGTTCGATCCACGACTTGCGCATCCTGCCTCTCTGGTCGGCTGAG
* *
26715654 -TGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATC-CCTAGTCTAAGC
839 AT-CC-GCACGCCCATTTCGTGGGTTCACTTAGGCATATGGAGTTCATCTCC-AGTCTAAGC
* * * *
26715714 ATACGGAGTTCATTTCTAGTCTAATATCAGACCGGATCGAGGGTTGCAGCAGTAGGATCGATAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGATAGC
* * * * * *
26715779 ACACAAGGGGGATCGGGTCCAGCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCA
66 ACACAAGGGGGA-CGGGTCCATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGATGAGCGCCCG
* *
26715844 CACGCTCGTTTCGTGGGTTAGG-TTAGGCATATGGAGTACATTCCATGTCTAAGC
130 CACGCTCGTTTCGTGGGTT-GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
26715898 CCCAGCCGGA
Statistics
Matches: 943, Mismatches: 121, Indels: 40
0.85 0.11 0.04
Matches are distributed among these distances:
892 1 0.00
893 8 0.01
894 403 0.43
895 283 0.30
896 8 0.01
897 1 0.00
900 1 0.00
903 2 0.00
905 4 0.00
906 232 0.25
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (897 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGATAGC
ACACAAGGGGGACGGGTCCATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGATGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGCTCA
TTCCCAGTCTAGAATTTTGAGCCACGGTGCACATGCTGGGCTCAGGAATGTGCTAGTGCCGCATT
TTTTTCACCCGAGGCACCACTCGGACGCGGAGAGCCTAATCGGCGGCATTGAGGGTTCCGACGAT
TGGAGGGCCGGGTAGTGTAAACACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGATCACAAAATCTT
CTCCACTTAGAGTTTTTAGCTGACTTTTTTTCTGCATGCCAAAAAAAATACAAGGATAACCTCTA
CCAAATTTACGGACAAAACTCTGTCTAAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCA
AAAATCATGAAAAATAAAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTACGGGACC
ATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAATATGAAGATGTGCTCGAA
CCCACCTACCACCCGTTCGATCCACGACTTGCGCATCCTGCCTCTCTGGTCGGCTGAGATCCGCA
CGCCCATTTCGTGGGTTCACTTAGGCATATGGAGTTCATCTCCAGTCTAAGC
Found at i:26716559 original size:158 final size:156
Alignment explanation
Indices: 26716080--26716581 Score: 474
Period size: 158 Copynumber: 3.2 Consensus size: 156
26716070 CCGAATCTAT
* * * * ** *
26716080 GCATACGGAGTTCATACCCA-GTCTAAGATC-GAACCAGATCGAGGGTTGCGACAATAGGATTGG
1 GCATACGGAGTTCAT-TCCATGTCTAAGATCAG-ACC-GACCGAGGGTTGTGGCAGCAGGATCGG
* * ** * * * * *
26716143 TAGCACGTATGGGGGACTTTGTCGATCCCCGGCTTACGAATTCTGTCTCTCTGGCCGGCTGAGCG
63 CAGCACGTAGGGGGGAC-GAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
*
26716208 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * *
26716238 GCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTATGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGAC-CGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * * * *
26716302 AGCACGTAGAGGGGTACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTTC-AGCCGACTCAAC
64 AGCACGTAG-GGGGGA-CGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGGCTGAGC
* * *
26716366 ACCCGCACGCTCGTTTCGTGGGTTGACTTAT
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
26716397 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGTACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCG-ACCGAGGGTTGTGGCAGCAGGATCGGC
* ** *
26716461 AGCACGTAGGGGGGATCGGGTCGATCCTTGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGCGC
64 AGCACGTAGGGGGGA-CGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
26716526 CCGCATGCTCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
26716555 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
26716582 CATACGGAGC
Statistics
Matches: 268, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 6 0.02
158 139 0.52
159 118 0.44
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGACCGAGGGTTGTGGCAGCAGGATCGGCAG
CACGTAGGGGGGACGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:26718138 original size:26 final size:26
Alignment explanation
Indices: 26718109--26718161 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26718099 GTCGACTTAG
* *
26718109 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
26718135 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
26718161 G
1 G
26718162 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:26718888 original size:26 final size:26
Alignment explanation
Indices: 26718852--26718904 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26718842 GTTGGCTTAG
26718852 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
26718878 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26718904 G
1 G
26718905 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26719667 original size:158 final size:156
Alignment explanation
Indices: 26719220--26719714 Score: 470
Period size: 158 Copynumber: 3.2 Consensus size: 156
26719210 CCCAGTCTAA
* ** *
26719220 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGACTGGATTGAGGGTTACGGTAGCAGGATCGGT
1 GCATATGGAGTTCATT-CCATGTCTAAGATCGGACTGGACTGAGGGTTGTGGCAGCAGGATCGGT
* *
26719284 AGCACGCAGGGGGGACC-G-GAAT---CGGCTTACGCATTCTGCCTCTCTGGTTGGCTGAGCGCC
65 AGCACGCA-GGGGGACCGGTGAATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* * *
26719344 CACACGCCCATTTCATGGGTTGGCTTAG
129 CGCACGCTCGTTTCATGGGTTGGCTTAG
* * * ** * * ** * *
26719372 GCATAGGGAGCTCATTCCATGTCTAAG-CCCTAGCCGAACTGAGGGTTGTGGCAGTGGGACCGGC
1 GCATATGGAGTTCATTCCATGTCTAAGATCGGA-CTGGACTGAGGGTTGTGGCAGCAGGATCGGT
* * * * * * *
26719436 AGCACGCAGAAGGGGATCGGGTCG-ATCCCTGGCCTACGCATTATGCCT-TTCGGTCAGCTCAGC
65 AGCACGCAG--GGGGA-CCGGT-GAATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGC
* * * *
26719499 GTCCGCACGCTCGTTTCGTGGGTTGACTTAT
126 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
26719530 GCATATGGAGTTTATTCCCA-GTCTAAGATCGGACTGGACTGAAGGTTGTGGCAGCAGGATCGAT
1 GCATATGGAGTTCATT-CCATGTCTAAGATCGGACTGGACTGAGGGTTGTGGCAGCAGGATCGGT
* * *
26719594 AGCACGTAGGGGGCACCAGGTGAATCCCCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCGC
65 AGCACGCAGGGGG-ACC-GGTGAATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
26719659 CCGTACGCTCGTTTCATGGCTTGGCTTAG
128 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
26719688 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
26719715 CATACGCAGC
Statistics
Matches: 262, Mismatches: 63, Indels: 30
0.74 0.18 0.08
Matches are distributed among these distances:
151 6 0.02
152 50 0.19
153 5 0.02
154 1 0.00
155 1 0.00
156 8 0.03
157 28 0.11
158 142 0.54
159 21 0.08
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCGGACTGGACTGAGGGTTGTGGCAGCAGGATCGGTA
GCACGCAGGGGGACCGGTGAATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:26719718 original size:26 final size:26
Alignment explanation
Indices: 26719688--26719740 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26719678 CTTGGCTTAG
* *
26719688 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGCAGCTCATTCCCA-GTCTAA
26719714 GCATACGCAGCTCATTCCCAGTCTAA
1 GCATACGCAGCTCATTCCCAGTCTAA
26719740 G
1 G
26719741 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGCTCATTCCCAGTCTAA
Found at i:26720793 original size:26 final size:25
Alignment explanation
Indices: 26720763--26720814 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
26720753 GTTGACTTAG
26720763 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCAT-CCCAGTCTAA
** *
26720789 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATCCCAGTCTAA
26720814 G
1 G
26720815 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCAGTCTAA
Found at i:26721304 original size:26 final size:26
Alignment explanation
Indices: 26721275--26721327 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26721265 ATTGACTTAG
*
26721275 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
26721301 GCATACATAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
26721327 G
1 G
26721328 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:26721755 original size:158 final size:159
Alignment explanation
Indices: 26721309--26721802 Score: 415
Period size: 158 Copynumber: 3.1 Consensus size: 159
26721299 AAGCATACAT
* * * * * * * * *
26721309 AGTTCATTCCCA-GTCTAAGATCGAACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCATGCA
1 AGTTCATT-CCATGTCTAAGATGGGATCAGACCAAGGGTTGCGGCAACAGGATCGACAGCACGCA
* * * * * * * * ** *
26721373 GAG-GGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCCTGCTGAGCGTCCGCACG
65 GAGCGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAGCCGGCTCAAAGCCCGCACG
* * *
26721437 C-CTGTTTCGTCGGTTGGCTTAGGCATAGGG
130 CTC-GTTTCGTGGGTTGACTTAGGCATACGG
** * * **** * * * * * *
26721467 AGCACATTCCATATCTATG-CCCCAGCCGGATCGAGGGTTGTGGCAACAGGATCGACAGCATGCA
1 AGTTCATTCCATGTCTAAGATGGGA-TCAGACCAAGGGTTGCGGCAACAGGATCGACAGCACGCA
* * * *** * * *
26721531 GAGGGGGATCGGGCCGATCCCCATCTTGTGCATTATGCCTCTTTGGCCTGCTCAACGCCCGTACG
65 GAGCGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAGCCGGCTCAAAGCCCGCACG
* *
26721596 CTCGTTTCGTGTGTTGACTTATGCATACGG
130 CTCGTTTCGTGGGTTGACTTAGGCATACGG
*
26721626 AGTTCATTCCCA-GTCTAAGATGGGATCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCA
1 AGTTCATT-CCATGTCTAAGATGGGATCAGACCAAGGGTTGCGGCAACAGGATCGACAGCACGCA
* * * * *
26721690 G-GCGGGATCGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTCCAGTCGGCTGAAAGCCCGCACG
65 GAGCGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAGCCGGCTCAAAGCCCGCACG
*
26721754 CTCGTTTCGTGGGTTGGCTTAGGCATACGG
130 CTCGTTTCGTGGGTTGACTTAGGCATACGG
26721784 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
26721803 CATACAGGGC
Statistics
Matches: 269, Mismatches: 60, Indels: 14
0.78 0.17 0.04
Matches are distributed among these distances:
157 8 0.03
158 139 0.52
159 117 0.43
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
AGTTCATTCCATGTCTAAGATGGGATCAGACCAAGGGTTGCGGCAACAGGATCGACAGCACGCAG
AGCGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAGCCGGCTCAAAGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGG
Found at i:26723587 original size:171 final size:171
Alignment explanation
Indices: 26723278--26723942 Score: 473
Period size: 171 Copynumber: 3.8 Consensus size: 171
26723268 TCGAGGGTTG
* * * *
26723278 CGACAGCAGGATCGACAGCACGCAGA-GGGGACCGAGCCGAT-CCTCGGCTTGCGCATTTTTGCC
1 CGACAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCT-GGCTTGTGCA-TTATGCC
* * * * * * * * * *
26723341 TCTACGATCGGATGAACCCCCGCACGCTCGTTTCATGGGTTGGCTTAGGTATACGGAGTACATTC
64 TCTCCGACCAGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTACATTC
* * **
26723406 CACA-TCTAAGCCCTAGTCGGACTAAGGGTTGTGGCAGCAGGAC
129 C-CAGTCTAAGCCCCAGTCGGACCAAGGGTTGTAACAGCAGGAC
* * * *
26723449 CGACAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCCCTGGCTTATGCATTATGCCTC
1 CGACAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGTGCATTATGCCTC
* * *
26723514 TCCGACCAGCTGAGCGCCCGTAAGCTCGTTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCC
66 TCCGACCAGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTACATTCCC
** *** * ** ** * * *
26723579 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCAGACCGGAT
131 AGTCTAAGC---CCCAG-TCGGACCAAGGGTTGTAACAG-CAGGAC
* *
26723625 CGAGGGTTGCGGTAGCAGGATCGACAGCACGCAG-GGGGGACCAGGCTGATACCTGGCTTGTGCA
1 CGA------C---AGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGTGCA
* * * * * * * *
26723689 TTTTGCCTCTCC-AGTCGGTTGAGCGCTCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA
57 TTATGCCTCTCCGA-CCAGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGA
* * * *
26723753 GTACATT-CCATGACTAAGCCCCAGTCGGACCGAGGGTTGTCACAGCAGTAC
121 GTACATTCCCA-GTCTAAGCCCCAGTCGGACCAAGGGTTGTAACAGCAGGAC
* * * ** * * **
26723804 CGGCAACGGGATCGACAGCACATAGAGGGGGAACGGGCTGATCCCCGTTTTGCT-CATTATGCCT
1 CGACAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTG-TGCATTATGCCT
* * * * * * *
26723868 CTCCTGTCTA-CTAAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATCC
65 CTCC-GACCAGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTACATTC
26723932 CCAGTCTAAGC
129 CCAGTCTAAGC
26723943 ATACGAAGTT
Statistics
Matches: 376, Mismatches: 94, Indels: 48
0.73 0.18 0.09
Matches are distributed among these distances:
170 19 0.05
171 175 0.47
172 24 0.06
173 4 0.01
174 3 0.01
175 10 0.03
176 7 0.02
179 5 0.01
180 11 0.03
181 3 0.01
182 1 0.00
183 4 0.01
184 91 0.24
185 19 0.05
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (171 bp):
CGACAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGTGCATTATGCCTC
TCCGACCAGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTACATTCCC
AGTCTAAGCCCCAGTCGGACCAAGGGTTGTAACAGCAGGAC
Found at i:26723590 original size:26 final size:26
Alignment explanation
Indices: 26723560--26723611 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
26723550 GTTGACTTAG
26723560 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
26723586 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
26723612 TATCAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:26723864 original size:355 final size:348
Alignment explanation
Indices: 26723166--26724283 Score: 1197
Period size: 355 Copynumber: 3.2 Consensus size: 348
26723156 TCTTTGGTCG
* * * * *
26723166 GCTGAGCGCCCGCACGCAT-GTTTCGTGGGTTGACTTGGGCATACGGAGTTCATCCCCAGTATAA
1 GCTGAGCGCCCGTACGC-TCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
* * *
26723230 GCATACAGAGTTTATTACCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGACA
65 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGATCGAGGGTTGCGACAGCAGGATCGACA
* * *
26723295 GCACGCAGAGGGGACCGAGCCGATCCTCGGCTTGCGCATTTTTGCCTCTACGATCGGATGAACCC
129 GCACGCAGGGGGGACCGAGCCGATCCT-GGCTTGCGCA-TTTTGCCTCTACG-TCGGATGAGCGC
* * * *
26723360 CCGCACGCTCGTTTCATGGGTTGGCTTAGGTATACGGAGTACATTCCA-CATCTAAGCCCTAGTC
191 CCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGA-CTAAGCCCTAGTC
* * * * *
26723424 GGACTAAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGCTG
255 GGACCAAGGGTTGT--CAGCAGTACCGGCA-CGGGATCGACAGCACGCAGAGGGGGAACGGGCTG
* *
26723489 ATCCCTGGCTTATG-CATTATGCCTCTCCGACCA
317 ATCCC-CG-TTTTGCCATTATGCCTCTCCGACCA
* * *
26723522 GCTGAGCGCCCGTAAGCTCGTTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
1 GCTGAGCGCCCGTACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
* **
26723587 CATACGGAGTTCATTCCCAGTCTAATATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGATCGAGGGTTGCGACAGCAGGATCGACAG
* * * * *
26723652 CACGCAGGGGGGACC-AGGCTGATACCTGGCTTGTGCATTTTGCCTCTCCAGTCGGTTGAGCGCT
130 CACGCAGGGGGGACCGA-GCCGAT-CCTGGCTTGCGCATTTTGCCTCTAC-GTCGGATGAGCGCC
*
26723716 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGACTAAGCCCCAGTCGG
192 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGACTAAGCCCTAGTCGG
* **
26723781 ACCGAGGGTTGTCACAGCAGTACCGGCAACGGGATCGACAGCACATAGAGGGGGAACGGGCTGAT
257 ACCAAGGGTTGT--CAGCAGTACCGGC-ACGGGATCGACAGCACGCAGAGGGGGAACGGGCTGAT
* *
26723846 CCCCGTTTTGCTCATTATGCCTCTCCTGTCTA
319 CCCCGTTTTGC-CATTATGCCTCTCC-GACCA
* * *
26723878 -CTAAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATCCCCAGTCTAAG
1 GCTGAGCGCCCGTACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
* * ** * *
26723942 CATACGAAGTTCATTCCCAGTCTAAGATCGGACGGGCCGAGGGTTGCAACAGCAGGATCGATAGC
66 CATACGGAGTTCATTCCCAGTCTAAGATCAGACGGATCGAGGGTTGCGACAGCAGGATCGACAGC
* * * * * * * * * *
26724007 ACGCAGGGGAGATCGAGCCGATCCCCGGCTTACGCATTTTACCTCTTCGGCCGGCTGAGTGCCCC
131 ACGCAGGGGGGACCGAGCCGAT-CCTGGCTTGCGCATTTTGCCTCTAC-GTCGGATGAGCGCCCG
* * * * **
26724072 TACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGTTCTAGTCGGA
194 TACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCATGACTAAGCCCTAGTCGGA
* * * * *
26724136 CCAAGTGTTGT--G--GTA---G--CGGGACCGACAGCACGCAGAGGGGG-ACTGGTTCGGTCCC
258 CCAAGGGTTGTCAGCAGTACCGGCACGGGATCGACAGCACGCAGAGGGGGAACGGGCT-GATCCC
** * *
26724191 CGACTTGCACATTATGCCTCTTCGATCA
322 CGTTTTGC-CATTATGCCTCTCCGACCA
* * * * *
26724219 GCTCAGCACCCGTACGCTCGTTTCGTGAGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAG
1 GCTGAGCGCCCGTACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
26724284 ATCAGACCAA
Statistics
Matches: 648, Mismatches: 101, Indels: 40
0.82 0.13 0.05
Matches are distributed among these distances:
341 7 0.01
342 103 0.16
345 1 0.00
348 3 0.00
350 1 0.00
353 4 0.01
354 140 0.22
355 239 0.37
356 147 0.23
357 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (348 bp):
GCTGAGCGCCCGTACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACGGATCGAGGGTTGCGACAGCAGGATCGACAGC
ACGCAGGGGGGACCGAGCCGATCCTGGCTTGCGCATTTTGCCTCTACGTCGGATGAGCGCCCGTA
CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGACTAAGCCCTAGTCGGACCA
AGGGTTGTCAGCAGTACCGGCACGGGATCGACAGCACGCAGAGGGGGAACGGGCTGATCCCCGTT
TTGCCATTATGCCTCTCCGACCA
Found at i:26725540 original size:26 final size:26
Alignment explanation
Indices: 26725504--26725554 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
26725494 TAACTTAGGA
26725504 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
26725530 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
26725555 ATCGAACCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:26725899 original size:26 final size:26
Alignment explanation
Indices: 26725870--26725922 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26725860 GTTGAATTAG
26725870 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
26725896 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26725922 G
1 G
26725923 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26726129 original size:368 final size:355
Alignment explanation
Indices: 26725108--26726440 Score: 1271
Period size: 368 Copynumber: 3.7 Consensus size: 355
26725098 CCTCTCTAGT
*
26725108 TGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTA
1 TGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAATTAGGCATACGAAGTTCATCCCCAGTCTA
* ** * * * *
26725173 AGCATAAGGAGTTCATTCATAGCCTAAGATCAGACCGGATTGAGGGTTGCGGCAGCAGGATTGAT
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGC-GCAGCAGGATCGAT
* * ** * * * *
26725238 AGCACACAGGGGGGATCGGGCTAATCCCCAGATTGTGTATTCTGCCTCTCCGACCGACTGAGCGC
130 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGC
* ** * * * *
26725303 CCGCATGCTTGTTTCATGGGTTGGCCTAGGCATACGGAGTACATTCCACATCTAAGCCCTAGTCG
195 CCGCAAGCTCATTTCGTGGGTTGGCATAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCG
* * ** * *
26725368 AACCGAGGGTTATGGTAGCAGGACCGGCAGCGGTATCGGCAGCACACATAGGGGGA-TGGGCTGA
260 AACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGATAGCACACAGAGGGGGACTGGGCTAA
* * * *
26725432 TCCCGGGCTTATGCATTATGCCTCTCCGGTC
325 TCCCGAGCTTACGCATTATGCCTCACCGCTC
* * * * *
26725463 -GACTGAGCACCCGCAAGCTCGTTTCGTGGGTT-AACTTAGGAATACGGAGTTCATCCCCAGTCT
1 TGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAA-TTAGGCATACGAAGTTCATCCCCAGTCT
* * *
26725526 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCTGATCGAGGGTTGCGACAGCAGTATCGA
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCG-CAGCAGGATCGA
* * * *
26725591 TAACACGCAGGGGGGTCCGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGGCCGACTGAGCG
129 TAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCG
** * * *
26725656 CCCGCACCCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGACCCAG-C
194 CCCGCAAGCTCATTTCGTGGGTTGGCATAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTC
* * * * ** * *
26725720 CATATCAAGGGTTGTGTTAGCAAAACCGGTAGCGGGATCGATAGCATACAGAGGGGGACTGGGCT
259 GA-ACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGATAGCACACAGAGGGGGACTGGGCT
**
26725785 AATTTCGAGCTTACGCATTATGCCTTTCCAACCGACCTCTCCCGC
323 AATCCCGAGCTTACGCATTATGCC--T-C-ACCG----CT----C
* * *
26725830 TGGCTGAACGCCCGCGCGCTAGTTTCGTGGGTTGAATTAGGCATACGAAGTTCATCCCCAGTCTA
1 TGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAATTAGGCATACGAAGTTCATCCCCAGTCTA
* * **
26725895 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCAAGGGTTGCAGCAGCAGGATCGGC
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGC-GCAGCAGGATCGAT
* * * * * * * * *
26725960 AGCACGCAGGGGGGACCTGGCCGATCCCTGGCTTGTGCATTTTGCCTTTTCGGTCGGCTAAGCAC
130 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGC
* *
26726025 CCGTAAGCTCATTTCGTGGGTTGGCATAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTTG
195 CCGCAAGCTCATTTCGTGGGTTGGCATAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCG
* * * * * * * *
26726090 GAGCGAGGGTTGTGGCAGTAGGACCGACAGCGGGATCGATAGCACGCAGAGGGGGACCGGGCTGA
260 AACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGATAGCACACAGAGGGGGACTGGGCTAA
* * *
26726155 TCCCCGA-CTTACGTATTATGCCTCTCTGGC-C
325 T-CCCGAGCTTACGCATTATGCCTCAC-CGCTC
* * * * * *
26726186 -GACTGAGCACCCGTATGCTCGTTTCGTGGGTTGACTTAGGTATACGAAGTTCATCCCCA-TCTA
1 TGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAATTAGGCATACGAAGTTCATCCCCAGTCTA
* ** * * *
26726249 AGCATACAGAGTTCATTTCCCAGTCTAAGATTAGATCGGACCGAGAGTTGCGACAGCAGGATCGA
66 AGCATACGGAGTTCA-TTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCG-CAGCAGGATCGA
* * * * * * * ** * *** * ** * *
26726314 CAGGACACAAGTGGGATCGGGTCGATCATCGACTTGCATATTTTGCCTCTCCGATCGACTAAGCA
129 TAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCG
* * * * * * *
26726379 CCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCA
194 CCCGCAAGCTCATTTCGTGGGTTGGCATAGGCATACGGAG-TACATTCCACGTCTAAGCCCCA
26726441 ACCGGACCAA
Statistics
Matches: 798, Mismatches: 155, Indels: 50
0.80 0.15 0.05
Matches are distributed among these distances:
353 4 0.01
354 276 0.35
355 215 0.27
356 2 0.00
357 1 0.00
358 1 0.00
359 3 0.00
361 1 0.00
363 1 0.00
364 1 0.00
365 2 0.00
366 1 0.00
367 1 0.00
368 283 0.35
369 6 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (355 bp):
TGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAATTAGGCATACGAAGTTCATCCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGCAGCAGGATCGATA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCC
CGCAAGCTCATTTCGTGGGTTGGCATAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGA
ACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGATAGCACACAGAGGGGGACTGGGCTAAT
CCCGAGCTTACGCATTATGCCTCACCGCTC
Found at i:26726872 original size:26 final size:26
Alignment explanation
Indices: 26726842--26726894 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26726832 GTTACCTTAG
26726842 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
26726868 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
26726894 G
1 G
26726895 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:26727248 original size:26 final size:26
Alignment explanation
Indices: 26727212--26727262 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26727202 TGGCTTGGGT
*
26727212 ATACGGAGTTCATCCCCAGTTTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
26727238 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
26727263 ATTAGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:26727613 original size:26 final size:26
Alignment explanation
Indices: 26727577--26727629 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26727567 GTTGACTTAG
26727577 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26727603 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26727629 G
1 G
26727630 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26727644 original size:367 final size:366
Alignment explanation
Indices: 26726808--26727828 Score: 1253
Period size: 367 Copynumber: 2.8 Consensus size: 366
26726798 TGGTCGGCTG
* * * * *
26726808 AGCGCCCGTACGCTCGTTTCATGCGTT-ACCTTAGGCATACAGAGTTCATCCCTAGTCTAAGCAT
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAT
* * * * * * *
26726872 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGGTAGCAGGATTGGTAGCAC
65 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGCAGTAGGATCGGCAGCAC
* * * * ** *
26726937 GCAGGGGGGATCAGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGTTGAGCGTCCGTA
130 GCAGGGGGGA-CTGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGTTGAGCACCCGCA
* * ** *
26727002 CGTTCGTTTCGTGGGTTGGCTTAGGCATACAAAGTACATTCCACGTCTAAGCCCCAGTTGGACCG
194 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTTGGACCG
** * * * * *
26727067 AGGGTTGTGGCAGCAGGACCGGTAGTGGGATCGGCAGTACGCAGACGGGGATCGAGCTGATCCCT
259 A-GGTTGTGGCAGCAGGACCGACAGCGAGATCGGCAGCACACAGACGGGGATCGAGCTGATCCCC
* * **** * *
26727132 GACTTGCACATTATGCCTCTTCGACCGGCCTCTTTGGTCGGCTG
323 GACTTACACATTATGCCTCTCCGACCGGCCTCTTCCCACAGCTA
* * * * *
26727176 AGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTGGGTATACGGAGTTCATCCCCAGTTTAAGCATA
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * *
26727241 CGGAGTTCATTCCCAGTCTAAGATTAGA-TCGGATCGAGGGTTACGGCAGTACGATCGGCAGCAC
66 CGGAGTTCATTCCCAGTCTAAGATCAGACT-GGATCGAGGGTTGCGGCAGTAGGATCGGCAGCAC
*
26727305 GCAGGGGGGACTGGATCGATCCCCGGCTTGCGCATTTTGCCTCTTCGACCGGTTGAGCACCCGCA
130 GCAGGGGGGACTGG-TCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGTTGAGCACCCGCA
* *
26727370 AGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCTCAGTTGGACCG
194 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTTGGACCG
* *
26727435 AGGTTGTGGCAGCAGGACCGACAGCGAGATCGGCAGCATACAGAGGGGGATCGAGCTGATCCCCG
259 AGGTTGTGGCAGCAGGACCGACAGCGAGATCGGCAGCACACAGACGGGGATCGAGCTGATCCCCG
** * *
26727500 ACTTATGCATTATGCCTCTCCGATCGGCCTC-TCCCACAAGTTA
324 ACTTACACATTATGCCTCTCCGACCGGCCTCTTCCCAC-AGCTA
26727543 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * * **
26727608 TGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGCAGTAGGATCAGCAGCATA
66 CGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGCAGTAGGATCGGCAGCACG
* * *
26727673 CAGGGGGGACTAGG-CTGATCCCCGACTTGCGCATTCTGCCTCTTTGGCCGGTTGAGCACCCGCA
131 CAGGGGGGACT-GGTC-GATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGTTGAGCACCCGCA
* * * * * *
26727737 CGCCCATTTCATGGGTTAGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGTCGAACC
194 CGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAGTTGGACC
*
26727801 AGGGGTTGTGGCAGC-GAGACCGAACAGC
258 -GAGGTTGTGGCAGCAG-GACCG-ACAGC
26727829 ATTTAAAGAG
Statistics
Matches: 560, Mismatches: 82, Indels: 21
0.84 0.12 0.03
Matches are distributed among these distances:
366 3 0.01
367 311 0.56
368 241 0.43
369 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (366 bp):
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGCAGTAGGATCGGCAGCACG
CAGGGGGGACTGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGTTGAGCACCCGCACG
CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTTGGACCGAG
GTTGTGGCAGCAGGACCGACAGCGAGATCGGCAGCACACAGACGGGGATCGAGCTGATCCCCGAC
TTACACATTATGCCTCTCCGACCGGCCTCTTCCCACAGCTA
Found at i:26728840 original size:26 final size:26
Alignment explanation
Indices: 26728804--26728855 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26728794 GTTGACTTAG
26728804 GCATACAGAGTTCATCCCAAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
* * *
26728830 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
26728856 AATTGAACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAAGTCTAA
Found at i:26729024 original size:26 final size:26
Alignment explanation
Indices: 26728988--26729040 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26728978 GCTGACTTAG
26728988 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
26729014 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
26729040 G
1 G
26729041 ATCAGTTCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:26729054 original size:184 final size:184
Alignment explanation
Indices: 26728730--26729180 Score: 476
Period size: 184 Copynumber: 2.5 Consensus size: 184
26728720 TACCACCCGT
* * * * *
26728730 TTGATCCCCAGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTTATGGG
1 TTGATCCCCAGCTTGCACATCCTGCCTCTCCGATCAGCTGAGCGCCCGCACGATCGTTTTATGGG
* * *
26728795 TTGACTTAGGCATACAGAGTTCATCCCAAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAAATT
66 CTGACTTAGGCATACAGAGTTCATCCCAAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATA
26728860 GAACCGGATCGAGGGTTGTGATAGTAGGATCGACAGCACACAAGCGGGACCGGA
131 GAACCGGATCGAGGGTTGTGATAGTAGGATCGACAGCACACAAGCGGGACCGGA
* * * * * *
26728914 TTGATCCCCGGCTTGCACATTCTGCCTCTCCGATTAGCTGAGTGCCTGCACGATCGTTTTGTGGG
1 TTGATCCCCAGCTTGCACATCCTGCCTCTCCGATCAGCTGAGCGCCCGCACGATCGTTTTATGGG
** * * *
26728979 CTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC
66 CTGACTTAGGCATACAGAGTTCATCCCAAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAAT-
** * ** * * *** * * *
26729044 AG-TTCGGATCGAGGGTTGCGGCAGCAGGATCGACAACTTGC-AGGGGGATCGGG
130 AGAACCGGATCGAGGGTTGTGATAGTAGGATCGACAGCACACAAGCGGGACCGGA
** ** * * * * *
26729097 CCGATCGTCAGTTTGCACATTCTGCCTCTTCGATCGGCTGAGCACCCGCACG-TCGTTTTATGGG
1 TTGATCCCCAGCTTGCACATCCTGCCTCTCCGATCAGCTGAGCGCCCGCACGATCGTTTTATGGG
* * *
26729161 TTGGCTTAGGCATACGGAGT
66 CTGACTTAGGCATACAGAGT
26729181 ACATTCCATG
Statistics
Matches: 218, Mismatches: 48, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
182 28 0.13
183 49 0.22
184 140 0.64
185 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (184 bp):
TTGATCCCCAGCTTGCACATCCTGCCTCTCCGATCAGCTGAGCGCCCGCACGATCGTTTTATGGG
CTGACTTAGGCATACAGAGTTCATCCCAAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATA
GAACCGGATCGAGGGTTGTGATAGTAGGATCGACAGCACACAAGCGGGACCGGA
Found at i:26729390 original size:26 final size:26
Alignment explanation
Indices: 26729354--26729404 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26729344 TTGACTTAGG
*
26729354 CATACGGAGTTGATCCCCAATCTAAC
1 CATACGGAGTTCATCCCCAATCTAAC
* *
26729380 CATATGGAGTTCATTCCCAATCTAA
1 CATACGGAGTTCATCCCCAATCTAA
26729405 GATCAGATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAC
Found at i:26729738 original size:158 final size:158
Alignment explanation
Indices: 26729380--26729880 Score: 485
Period size: 158 Copynumber: 3.2 Consensus size: 158
26729370 CCAATCTAAC
* * * *
26729380 CATATGGAGTTCATTCCCA-ATCTAAGATCAGATCGGATCGAGGGTTGCGGTAGTAGGATCGGTA
1 CATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAG-CGGATCGGCA
* * * *
26729444 GCACGC-AAGGGGGACCGGGTCGATCCCCAGA-TTGCACATTCTGCCTC-TCTGATCGACTGAGT
64 GCACGCAAAGAGGGACCGGGTCGATCCCC-GACTTGCGCATTCTGCCTCTTC-GATCGGCTGAGC
* * *
26729506 GCCCACTCGCCCATTTCGTGGGTTGGCTTAGG
127 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGG
* ** ** * * *
26729538 CATA-GGAAGCTCATTCCATGTCTAAGCCCCAG-TCAAACCGAGGGTTGTGGTAGCGGCATCGGG
1 CATACGG-AGTTCATTCCATGTCTAAG-ATCAGATCGGATCGAGGGTTGCGGTAGCGG-ATCGGC
* * * * * * * *
26729601 AGCACGCAAAGAGGGATCGGGCCGATTCCCGACTTGTGCATTATGCCTCTTCGGTCGGCTCAGCA
63 AGCACGCAAAGAGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGAGCG
* *
26729666 CCCGCACGCTCATTTCGTGGGTTGACTTATG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAGG
* * *
26729697 CATACGGAGTTCATTCCA-GTCTAAGATTAGATCGGATCGAGGGTTGCGGTAGCAGGATCGACAA
1 CATACGGAGTTCATTCCATGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGC-GGATCGGCAG
* ** * * * * *
26729761 CATGCAGGGTGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTTTTCGACCGGCTGAGCGCC
65 CACGCAAAGAGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCC
* *
26729826 CGTACGCTCGTTTCGTGGGTTGGCTTAGG
130 CGCACGCTCATTTCGTGGGTTGGCTTAGG
* *
26729855 CATACGAAGTTCATTTCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
26729881 CATACGGAGC
Statistics
Matches: 272, Mismatches: 60, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 9 0.03
158 168 0.62
159 91 0.33
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
CATACGGAGTTCATTCCATGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCGGATCGGCAGC
ACGCAAAGAGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAGG
Found at i:26729997 original size:11 final size:11
Alignment explanation
Indices: 26729981--26730030 Score: 82
Period size: 11 Copynumber: 4.5 Consensus size: 11
26729971 GGCACCATAT
26729981 TCGGAGCATCG
1 TCGGAGCATCG
26729992 TCGGAGCATCG
1 TCGGAGCATCG
*
26730003 TTGGAGCATCG
1 TCGGAGCATCG
26730014 TCGGAGCATCG
1 TCGGAGCATCG
*
26730025 TTGGAG
1 TCGGAG
26730031 AGCCTAACTG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 36 1.00
ACGTcount: A:0.18, C:0.22, G:0.38, T:0.22
Consensus pattern (11 bp):
TCGGAGCATCG
Found at i:26730011 original size:22 final size:22
Alignment explanation
Indices: 26729983--26730030 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
26729973 CACCATATTC
26729983 GGAGCATCGTCGGAGCATCGTT
1 GGAGCATCGTCGGAGCATCGTT
26730005 GGAGCATCGTCGGAGCATCGTT
1 GGAGCATCGTCGGAGCATCGTT
26730027 GGAG
1 GGAG
26730031 AGCCTAACTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.19, C:0.21, G:0.40, T:0.21
Consensus pattern (22 bp):
GGAGCATCGTCGGAGCATCGTT
Found at i:26730680 original size:184 final size:184
Alignment explanation
Indices: 26730344--26730707 Score: 460
Period size: 184 Copynumber: 2.0 Consensus size: 184
26730334 GCGCATTCTA
* * * * *
26730344 CCTCTTCGGTCGGTTGAGTGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACAT
1 CCTCTCCGGTCGGCTGAGTGCCCGTAAGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTACAT
* * * * * * *
26730409 TCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCAGCAGCGGGATCGATAGCA
66 TCCACGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCAGGACCAGCAGCGAGATCGACAACA
* *
26730474 CGCAGAAGGGGACCTAGCTGATCCCCAGCTTGCACATTATGCCTCTTCGATCGG
131 CGCAGAAGGGAACCGAGCTGATCCCCAGCTTGCACATTATGCCTCTTCGATCGG
* *
26730528 CCTCTCCGGTCGGCTGAGTGCCCGTAAGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTACAT
1 CCTCTCCGGTCGGCTGAGTGCCCGTAAGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTACAT
** * * * * * *
26730593 TCCGTGTCTATGCCCCAGCCAGACCGAGGGTTATGGCAGTAGGATCGGTAGTGAGATCGACAACA
66 TCCACGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCAGGACCAGCAGCGAGATCGACAACA
* * * *
26730658 TGCAG-AGGGTAACCGGGCTGATCCTCAGCTTTCACATTATGCCTCTTCGA
131 CGCAGAAGGG-AACCGAGCTGATCCCCAGCTTGCACATTATGCCTCTTCGA
26730708 CCTGTCTTTT
Statistics
Matches: 151, Mismatches: 28, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
183 4 0.03
184 147 0.97
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
CCTCTCCGGTCGGCTGAGTGCCCGTAAGCTCATTTCATCGGTTGGCTTAGGCATACGAAGTACAT
TCCACGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCAGGACCAGCAGCGAGATCGACAACA
CGCAGAAGGGAACCGAGCTGATCCCCAGCTTGCACATTATGCCTCTTCGATCGG
Found at i:26730803 original size:26 final size:26
Alignment explanation
Indices: 26730767--26730819 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26730757 TTGGACTTAG
*
26730767 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
26730793 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
26730819 G
1 G
26730820 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Done.