Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 278 of 402
Found at i:26731495 original size:159 final size:158
Alignment explanation
Indices: 26731332--26731626 Score: 358
Period size: 158 Copynumber: 1.9 Consensus size: 158
26731322 CAGCTGGACC
* * * * *
26731332 GAGGGTTGTGGTAGCGGGACCGGCAGCACGCAGAGGGGAACTGGGTCGATCCCCGGCTTGCGCAT
1 GAGGGTTGTGGCAGCAGGACCGACAACACGCAG-GGGGAACTGGGTCGATCCCCGGCTTGCACAT
* * * *
26731397 TATGCCTCTTTGACTGGCTCAGCGCCCGCACGCTCGTTACGTGGGTTGACTTAT-GCATACGGAG
65 TATGCCTCTCTGACCGACTCAACGCCCGCACGCTCGTTACGTGGGTTGACTT-TGGCATACGGAG
26731461 TTCATTCCCAGTCTAAGATCGGACCGTACA
129 TTCATTCCCAGTCTAAGATCGGACCGTACA
* ** * * * * *
26731491 GAGGGTTGTGGCAGTAGGATTGACAACATGCAGGGGGGATTGGGTTGGTCCCCGGCTTGCACATT
1 GAGGGTTGTGGCAGCAGGACCGACAACACGCAGGGGGAACTGGGTCGATCCCCGGCTTGCACATT
* * * * * *
26731556 CTGCCTCTCTGGCCGACTGAACGCCCTCACGCTCGTTTCGTGGGTTGGCTTTGGCATACGGAGTT
66 ATGCCTCTCTGACCGACTCAACGCCCGCACGCTCGTTACGTGGGTTGACTTTGGCATACGGAGTT
26731621 CATTCC
131 CATTCC
26731627 ATGCCTAAGC
Statistics
Matches: 112, Mismatches: 23, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
157 1 0.01
158 86 0.77
159 25 0.22
ACGTcount: A:0.17, C:0.26, G:0.33, T:0.25
Consensus pattern (158 bp):
GAGGGTTGTGGCAGCAGGACCGACAACACGCAGGGGGAACTGGGTCGATCCCCGGCTTGCACATT
ATGCCTCTCTGACCGACTCAACGCCCGCACGCTCGTTACGTGGGTTGACTTTGGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACCGTACA
Found at i:26732366 original size:26 final size:26
Alignment explanation
Indices: 26732330--26732382 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26732320 GTCGACTTAG
*
26732330 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26732356 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26732382 G
1 G
26732383 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26732543 original size:26 final size:26
Alignment explanation
Indices: 26732513--26732565 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26732503 GTTCACTTAG
* *
26732513 GCATACGGAGTTCATT-CCATATCTAA
1 GCATACAGAGCTCATTCCCA-ATCTAA
26732539 GCATACAGAGCTCATTCCCAATCTAA
1 GCATACAGAGCTCATTCCCAATCTAA
26732565 G
1 G
26732566 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAATCTAA
Found at i:26733285 original size:26 final size:26
Alignment explanation
Indices: 26733233--26733285 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26733223 GTTGACTTAG
* * *
26733233 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
26733259 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
26733285 G
1 G
26733286 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:26733290 original size:903 final size:905
Alignment explanation
Indices: 26731451--26733308 Score: 2794
Period size: 905 Copynumber: 2.1 Consensus size: 905
26731441 GTTGACTTAT
* * * * * * *
26731451 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGTA-CAGAGGGTTGTGGCAGTAGGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGACAGCAAGATGGAC
* * * *** * * *
26731515 AACATGCAGGGGGGATTGGGTTGGTCCCCGGCTTGCACATTCTGCCTCTCTGGCCGACTGAACGC
65 AACACGCAGGAGGGATCGGGTCAATCCCCGGCTTACACATTCTACCTCTCCGGCCGACTGAACGC
* * * ** * * *
26731580 CCTCACGCTCGTTTCGTGGGTTGGCTTTGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAG
130 CCGCACGCTAGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCATACCTAAGCATACAGAG
* * * *
26731645 CTCATTCCCAGTCTAAGATTTTGAGCCATGGTGAACATGCTGGGCTCGGGCATGTGCTGGTGGCG
195 CTCATTCCCAATCTAAGATTTTGAGCCACGGTGAACATGCTGGGCTCGGGCATGTGCAGGTGCCG
** *
26731710 CATTTTTTCACCCGGGGCACCATCGTCGGAGCATCGTCGAAGAGCCTAACCGACGGCATTAGGGG
260 CATTTTTTCACCCGGGGCACCATCGTCGGAGCATCACCGAAGAGCCTAACCGACGGCATTAGAGG
* *
26731775 TTCCGGCGATGGGGGGGCCGGGTGTTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCC
325 TTCCGGCGATGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCC
* *
26731840 TGATATTGGCCCCGTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
390 TGATATTGGCCCCCTATCCCTCATCAAACATCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
26731905 TTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAACGACC
455 TTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAACGACC
* **
26731970 ACAAAATCTTCTCCACTTCGACTTTTTAGCTGAATTTTTTTTTGCATGTCAACAAAAATACAAGG
520 ACAAAATCTTCTCCACTTCGACTTTTTAGCTGAATTTTTTTGTGCATCCCAACAAAAATACAAGG
* * *
26732035 ATCACCTCTACCAAATTTGGGGGCAAAACTCTTTCTAAAAAAATTTAAAAAAATCCTGAACCGTA
585 ATCACCTCTACCAAATTTGCGGACAAAACTCTTTCTAAAAAAATTTAAAAAAATCCTAAACCGTA
* *
26732100 AAAAGTTTTAAAAATCGTGAAAAATAGAAAAAGAGTTGTCTTGCCACGAAACTTCACATGAAGGC
650 AAAAGTTTTAAAAATCATGAAAAATAGAAAAAGAGTCGTCTTGCCACGAAACTTCACATGAAGGC
* * ** *
26732165 TTAGGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAGAAATATGAAGA
715 TTAGGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATAAAAAAAATATGAAGA
* * **
26732230 TGTGCTTGAACCCACCTACCACCTGTTCGATCTCTGGCTTGCGCATCCTGCCTCTCTGGTCGGTT
780 TGTGCTTGAACCCACCTACCACCCGTTCGATCTCTGGCTTGCGCATCCTGACTCTCTGGTCGACT
*
26732295 GAGCGCCCCCACGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATCCCCAGTGTAA
845 AAGCGCCCCCACGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATCCCCAGTGTAA
26732356 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAAGATGGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAAGATGGACA
* * * *
26732421 GCACGCA-GAGGGATCGGGTCAATCCCCGGCTTACGCATTCTACCTCTCCGGTCGGCT-AAGCGC
66 ACACGCAGGAGGGATCGGGTCAATCCCCGGCTTACACATTCTACCTCTCCGGCCGACTGAA-CGC
* *
26732484 CCGCACGTTAGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCATATCTAAGCATACAGAG
130 CCGCACGCTAGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCATACCTAAGCATACAGAG
*
26732549 CTCATTCCCAATCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTGCAGGTGCCG
195 CTCATTCCCAATCTAAGATTTTGAGCCACGGTGAACATGCTGGGCTCGGGCATGTGCAGGTGCCG
* * *
26732614 TATTTTTTGCGCCCGGGGCACCATCGTCGGAGCATCACCGGAGAGCCTAACCGACGGCATTAGAG
260 CATTTTTT-CACCCGGGGCACCATCGTCGGAGCATCACCGAAGAGCCTAACCGACGGCATTAGAG
* * * * ** *
26732679 GTTCTGGTGATTGGGGGGCCGGGGGGTGTGTGCACATGATGTGTGATGGGTGCTGGTAGTTGGCC
324 GTTCCGGCGATGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCC
* *
26732744 CTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
389 CTGATATTGGCCCCCTATCCCTCATCAAACATCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * * **
26732809 ATTTTTTAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACTCTTTTTTCAAACGGT
454 ATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAACGAC
* *
26732874 CACAAAATTTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCCAACAAAAATACAAG
519 CACAAAATCTTCTCCACTTCGACTTTTTAGCTGAATTTTTTTGTGCATCCCAACAAAAATACAAG
* *
26732939 GATCACCT-TACCAAATTTGCTGACAAAACTCTTTCTAATAAAATTT-AAAAAAT-CTCAAACCG
584 GATCACCTCTACCAAATTTGCGGACAAAACTCTTTCTAAAAAAATTTAAAAAAATCCT-AAACCG
* * * *
26733001 TAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAG
648 TAAAAAGTTTTAAAAATCATGAAAAATAGAAAAAGAGTCGTCTTGCCACGAAACTTCACATGAAG
* *
26733066 GCTTAGGGGACTATTATTTGAATTTACAAGCCATAAAAATGGCATTGGCATAAAAAAAATATGAA
713 GCTTAGGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATAAAAAAAATATGAA
26733131 GATGTGCTTGAACCCACCTACCACCCGTTCGATC-CTCGGCTTGCGCATCCTGACTCTCTGGTCG
778 GATGTGCTTGAACCCACCTACCACCCGTTCGATCTCT-GGCTTGCGCATCCTGACTCTCTGGTCG
* *
26733195 ACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTGTAA
842 ACTAAGCGCCCCCACGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATCCCCAGTGTAA
* *
26733259 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCG
26733309 GTAGCAGGAT
Statistics
Matches: 856, Mismatches: 92, Indels: 12
0.89 0.10 0.01
Matches are distributed among these distances:
902 4 0.00
903 297 0.35
904 198 0.23
905 356 0.42
906 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (905 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAAGATGGACA
ACACGCAGGAGGGATCGGGTCAATCCCCGGCTTACACATTCTACCTCTCCGGCCGACTGAACGCC
CGCACGCTAGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCATACCTAAGCATACAGAGC
TCATTCCCAATCTAAGATTTTGAGCCACGGTGAACATGCTGGGCTCGGGCATGTGCAGGTGCCGC
ATTTTTTCACCCGGGGCACCATCGTCGGAGCATCACCGAAGAGCCTAACCGACGGCATTAGAGGT
TCCGGCGATGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCT
GATATTGGCCCCCTATCCCTCATCAAACATCAAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAACGACCA
CAAAATCTTCTCCACTTCGACTTTTTAGCTGAATTTTTTTGTGCATCCCAACAAAAATACAAGGA
TCACCTCTACCAAATTTGCGGACAAAACTCTTTCTAAAAAAATTTAAAAAAATCCTAAACCGTAA
AAAGTTTTAAAAATCATGAAAAATAGAAAAAGAGTCGTCTTGCCACGAAACTTCACATGAAGGCT
TAGGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATAAAAAAAATATGAAGAT
GTGCTTGAACCCACCTACCACCCGTTCGATCTCTGGCTTGCGCATCCTGACTCTCTGGTCGACTA
AGCGCCCCCACGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATCCCCAGTGTAA
Found at i:26733608 original size:26 final size:26
Alignment explanation
Indices: 26733578--26733628 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
26733568 TGACTTAGGT
26733578 ATACAGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
*
26733604 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
26733629 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:26734288 original size:122 final size:122
Alignment explanation
Indices: 26734062--26734302 Score: 279
Period size: 122 Copynumber: 2.0 Consensus size: 122
26734052 GCCGATCCCC
* * * * *
26734062 GACTTATGCATTCTGCCACTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
1 GACTTATGCATTATGCCACTCCGACCGGCTCAACGCCCGCACGCCCGTTTCATGGGTTGACTTAG
** * *
26734127 GCATAGGGGGCTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCCG
66 GCATAGGAAGCTCATTCCATGTCTAAGCACCAGCCGGACCGAGAGTTGTGGCAGCCG
* * ** *
26734184 GACTTATGCATTATGCCTCTTCGACCGGCTCAACGCCCGCACGCTTGTTTCATGGGTTGACTTAT
1 GACTTATGCATTATGCCACTCCGACCGGCTCAACGCCCGCACGCCCGTTTCATGGGTTGACTTAG
* * * **
26734249 GCATATGAAGTTCATTCCCA-GTCTAAG-ATCAGATTGGACCGAGAGTTGTGGCAG
66 GCATAGGAAGCTCATT-CCATGTCTAAGCACCAG-CCGGACCGAGAGTTGTGGCAG
26734303 GAAGATCGAC
Statistics
Matches: 98, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
121 3 0.03
122 92 0.94
123 3 0.03
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.26
Consensus pattern (122 bp):
GACTTATGCATTATGCCACTCCGACCGGCTCAACGCCCGCACGCCCGTTTCATGGGTTGACTTAG
GCATAGGAAGCTCATTCCATGTCTAAGCACCAGCCGGACCGAGAGTTGTGGCAGCCG
Found at i:26734592 original size:183 final size:184
Alignment explanation
Indices: 26734260--26734595 Score: 424
Period size: 183 Copynumber: 1.8 Consensus size: 184
26734250 CATATGAAGT
*** * * * *
26734260 TCATTCCCAGTCTAAGATCAGATTGGACCGAGAGTTGTGGCAGGAAGATCGACAGCACGCAGGGG
1 TCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTGCGACAGGAAGATCGACAACACGCAGAGG
* * *
26734325 GGATCGGGTCGATCCCCGACTTGCCCATTTTGCCCTTCCGACCGGCTGAGCGCCCGCACACTCAT
66 GGACCGGGCCGATCCCCGACTTGCCCATTCTGCCCTTCCGACCGGCTGAGCGCCCGCACACTCAT
*
26734390 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGC
131 TTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGC
* * * * * *
26734444 TCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGTAGGATTGACAACACGCA-AGG
1 TCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTGCGACAGGAAGATCGACAACACGCAGAGG
* * * * * ** *
26734508 GGACCGGGCCGATCTCCGGCTTGCGCATTCTG-CCTCTCCGATCGGCTGAGCGCCCGTACGTTCG
66 GGACCGGGCCGATCCCCGACTTGCCCATTCTGCCCT-TCCGACCGGCTGAGCGCCCGCACACTCA
26734572 TTTCATGGGTTGGCTTAGGCATAC
130 TTTCATGGGTTGGCTTAGGCATAC
26734596 AAAGTACATT
Statistics
Matches: 126, Mismatches: 25, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
182 3 0.02
183 74 0.59
184 49 0.39
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (184 bp):
TCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTGCGACAGGAAGATCGACAACACGCAGAGG
GGACCGGGCCGATCCCCGACTTGCCCATTCTGCCCTTCCGACCGGCTGAGCGCCCGCACACTCAT
TTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGC
Found at i:26734826 original size:26 final size:26
Alignment explanation
Indices: 26734774--26734826 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26734764 GTTGACTTAG
* *
26734774 GCATACGAAGTTCATCCCTAGTTTAA
1 GCATACAAAGTTCATCCCTAGTCTAA
*
26734800 GCATACAAAGTTTATTCCC-AGTCTAA
1 GCATACAAAGTTCA-TCCCTAGTCTAA
26734826 G
1 G
26734827 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCTAGTCTAA
Found at i:26735176 original size:26 final size:26
Alignment explanation
Indices: 26735128--26735180 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26735118 GTTGACTTAG
*
26735128 GCATACGGAGTTCATCCGTAGTCTAA
1 GCATACGGAGTTCATCCGCAGTCTAA
26735154 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTCA-TCCGCAGTCTAA
26735180 G
1 G
26735181 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCGCAGTCTAA
Found at i:26735190 original size:354 final size:352
Alignment explanation
Indices: 26734723--26736070 Score: 1101
Period size: 354 Copynumber: 3.9 Consensus size: 352
26734713 TCTCCTATCG
* * * * * *
26734723 GCCTCTC-CGGCCAGCTTAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
1 GCCTCTCTCGACCTGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* ** * * *
26734787 ATCCCTAGTTTAAGCATACAAAGTTTATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTACGGC
66 ATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGGT
* *
26734852 AGTAGGATCGACAGCACACAGGGGCGACCAGGGCAATCCCCGGCTTGCGCATTCTGCCTCTTCAA
131 AGTAGGATCGACAGCACACAGGGG-GACC-GGGCGATCCCCGGCTTGCGCATTCTGCCTCTTCGA
* * * *
26734917 CCGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTGGGCATACGGTGTACATTCCACGTCT
194 TCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCT
* * * *
26734982 AAGCCCCAGTCGGACCGAAGGTTGTGGCAGCAGGACCGGTAGCAGGATCGACAGTACATAGAGGG
259 AAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGATAGCAGGATCGACAGCACACAGAGGG
26735047 GGACCGGGCTGATCCCCGACTTAGCATTAT
324 GGACCGGGCTGATCCCC-ACTTAGCATTAT
* * *
26735077 GCCTCTCT-GACCTGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
1 GCCTCTCTCGACCTGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
26735141 ATCCGTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGT
66 ATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGGT
* * * * *
26735206 AGTAGGATCGACAGCACGCAAGGGGG-TCGGTCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGG
131 AGTAGGATCGACAGCACAC-AGGGGGACCGG-GCGATCCCCGGCTTGCGCATTCTGCCTCTTCGA
* * * * * * **
26735270 TCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGGTTAGGCATAGGGGGCT-CATTCCATTTC
194 TCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTC
* * *
26735334 TAAGCCCCAGTC-GACCGAGGGTTATGGTAGCCA-GA-C-----C-GG-T--A-A-CACGCAGAG
258 TAAGCCCCAGTCGGACCGAGGGTTGTGGCAG-CAGGACCGATAGCAGGATCGACAGCACACAGAG
* * * * *
26735385 GGGGACCAGACCGATGCCCAGCTTGTGCATTAT
322 GGGGACCGGGCTGATCCCCA-CTT-AGCATTAT
** * * * * * **
26735418 GCCTCT-TCGGTCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTATGCATACGTTGTTC
1 GCCTCTCTCGACCTGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
26735482 ATTCCC-AGTCTAAG-AT-C-G-G---------A-TC---G----GA-CTGA--G-A-GTTACGG
66 A-TCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGG
* ** * ** ** * * *
26735520 TAGCAACATTGACAGCACACAGGGGGGATTGGGTCGATCCTTGGCTTGCGCATTCTGTCGCTCCG
130 TAGTAGGATCGACAGCACACA-GGGGGACCGGG-CGATCCCCGGCTTGCGCATTCTGCCTCTTCG
** * * * *
26735585 ATCGGCTGAGTGCCCGCACACTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTTCATCCCTA-GT
193 ATCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCC-ACGT
* * * * * *
26735649 CTAAGCACCAGCCAGACCGAGGGTTGTGGCATCACGACCGATAGC-GAGATC-AGCAGCACGCAG
257 CTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGATAGCAG-GATCGA-CAGCACACAG
* * *
26735712 AGGGGGACC-AGCTTGATCCTCAGTTACGCATTAT
320 AGGGGGACCGGGC-TGATCCCCACTTA-GCATTAT
* * *
26735746 GCCTCTCT-GACCTACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC
1 GCCTCTCTCGACCTGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * * *
26735810 ACCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAAGGTTGTGGT
66 ATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGGT
* * * ** * * * *
26735875 AGTGGGATCGACAGCATCTA-GGGGGGATCAGACCGATCCTCGACTTGCGCATTCTGTCTC-TCT
131 AGTAGGATCGACAGCA-C-ACAGGGGGA-CCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTTCG
* ** * *
26735938 AGCCGATTGAGCACCCGCACACTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGT
193 A-TCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGT
* * * * * * *
26736003 CTAAGCCCCAGCCGGACCGAGGTTTGTGCCAGCAGGATCGATAGCGGGATTGACAGCATACAGAG
257 CTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGATAGCAGGATCGACAGCACACAGAG
26736068 GGG
322 GGG
26736071 CATCGACAGC
Statistics
Matches: 786, Mismatches: 143, Indels: 130
0.74 0.14 0.12
Matches are distributed among these distances:
314 1 0.00
315 27 0.03
316 88 0.11
317 19 0.02
318 1 0.00
319 3 0.00
320 2 0.00
323 2 0.00
324 2 0.00
325 1 0.00
326 1 0.00
327 5 0.01
328 73 0.09
329 25 0.03
331 1 0.00
332 1 0.00
337 1 0.00
338 1 0.00
339 2 0.00
340 27 0.03
341 68 0.09
342 6 0.01
344 1 0.00
345 3 0.00
346 1 0.00
349 2 0.00
350 3 0.00
351 1 0.00
352 20 0.03
353 102 0.13
354 286 0.36
355 9 0.01
356 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (352 bp):
GCCTCTCTCGACCTGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAAGGTTGCGGT
AGTAGGATCGACAGCACACAGGGGGACCGGGCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATC
GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAA
GCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGATAGCAGGATCGACAGCACACAGAGGGGG
ACCGGGCTGATCCCCACTTAGCATTAT
Found at i:26735826 original size:26 final size:26
Alignment explanation
Indices: 26735797--26735849 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26735787 GTTGACTTAG
26735797 GCATACGGAGTTCACCCCCAGTCTAA
1 GCATACGGAGTTCACCCCCAGTCTAA
* **
26735823 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACCCCCAGTCTAA
26735849 G
1 G
26735850 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACCCCCAGTCTAA
Found at i:26738018 original size:26 final size:26
Alignment explanation
Indices: 26737978--26738030 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26737968 GTTGGCTTAG
*
26737978 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
*
26738004 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
26738030 G
1 G
26738031 ATTTGAGCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:26739079 original size:26 final size:26
Alignment explanation
Indices: 26739042--26739094 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26739032 GTTGACTTAG
26739042 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
26739068 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
26739094 G
1 G
26739095 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26739428 original size:26 final size:26
Alignment explanation
Indices: 26739398--26739450 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26739388 GTTGACTTAG
26739398 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
26739424 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26739450 G
1 G
26739451 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26739481 original size:356 final size:354
Alignment explanation
Indices: 26738700--26739701 Score: 1202
Period size: 356 Copynumber: 2.8 Consensus size: 354
26738690 GTTGACTTAG
* * *
26738700 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGACAGTAGGATCGGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCAGGATCGGCA
* * * * * *
26738765 GCACGCAGGGGGGATCGGGCCGATCCTCGACTTACGCATTCTACCTCTCAGGCCGGTTGAGCGCC
65 GCACG-AAGGGGGATC-GGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACC
** * *
26738830 CGTACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAGCCG
128 CGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGCCA
* * * * *
26738894 GACCGAGAGTTATGGTAGCAGGACCGGTAGTGAGATCGGCAGCACATAGAGGGGGA-TCGAGCTG
192 GACCGAGGGTTGT-G-A-CA-G--C---AG-GACA--GGCAGCACGTAGAGGGGGACT-GGGCTG
** * * * *
26738958 ATCCTTGGCTTGCGCATTATGCCCCTCCGG-TCAGCCTCTCTAATCGACTGAGCACCCGCACGCT
244 ATCCCCGGCTTGCGCATTATGCCTCTTCGGCTCAGCCTCTCCAACCGACTGAGCACCCGCACGCT
* *
26739022 CGTTTCGTTGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
309 CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
* * * *
26739068 GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCAGGATCGGCA
**
26739133 GCACGTAAGGGGGATCAGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCACC
65 GCACG-AAGGGGGATC-GGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACC
*
26739198 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAG
128 CGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAG
* *
26739263 ACCGAGGGTTGTGACAGCAGGACAGGCAGCACGTAGAGGGGGACTGGGTTGATCCCCAGCTTGCG
193 ACCGAGGGTTGTGACAGCAGGACAGGCAGCACGTAGAGGGGGACTGGGCTGATCCCCGGCTTGCG
** ** *
26739328 CATTATGCCTCTTCGGCT-AGCCTCTCCGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTG
258 CATTATGCCTCTTCGGCTCAGCCTCTCCAACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTG
*
26739392 ACTTAGGCATACGGAGTTCATCCCCAGTCTAA
323 ACTTAGGCATACAGAGTTCATCCCCAGTCTAA
* * * * *
26739424 GCATATGGAGTTCATTCTCAGTCTAAGATCGGATCAGACCGAAGGTTGTGGCAGCAGGATTGGCA
1 GCATACGGAGTTCATTC-CAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCAGGATCGGCA
* * * * **
26739489 GCACGCAGAGGGGATCGAGTCGATCCCCGACTTGCGCATTTTGCCTCTCCAACCGGCTGAGCACC
65 GCACGAAG-GGGGATCG-GCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACC
* *
26739554 CGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCTCAGCCAA
128 CGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAG
* ** * ** * * *
26739619 ACCGAGGGTTGTGGCAGTGGGACCGATAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTACG
193 ACCGAGGGTTGTGACAGCAGGACAGGCAGCACGTAGAGGGGGACTGGGCTGATCCCCGGCTTGCG
26739684 CATTATGCCTCTTCGGCT
258 CATTATGCCTCTTCGGCT
26739702 GGCTCAGTGC
Statistics
Matches: 553, Mismatches: 74, Indels: 26
0.85 0.11 0.04
Matches are distributed among these distances:
355 3 0.01
356 355 0.64
357 3 0.01
358 3 0.01
359 2 0.00
362 1 0.00
364 1 0.00
365 2 0.00
366 1 0.00
367 3 0.01
368 178 0.32
369 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (354 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCAGGATCGGCAG
CACGAAGGGGGATCGGCCGATCCTCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCACCCGT
ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACC
GAGGGTTGTGACAGCAGGACAGGCAGCACGTAGAGGGGGACTGGGCTGATCCCCGGCTTGCGCAT
TATGCCTCTTCGGCTCAGCCTCTCCAACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACT
TAGGCATACAGAGTTCATCCCCAGTCTAA
Found at i:26739782 original size:159 final size:158
Alignment explanation
Indices: 26739424--26739787 Score: 365
Period size: 159 Copynumber: 2.3 Consensus size: 158
26739414 CCCAGTCTAA
* * * * ** *
26739424 GCATATGGAGTTCATTCTCAGTCTAAGATCGGATCAGACCGAAGGTTGTGGCAGCAGGATTGGCA
1 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGACCGACA
* * * *
26739489 GCACGCAGAGGGGATCGAGTCGATCCCCGACTTGCGCATTTTGCCTCTCCAACCGGCTGAGCACC
66 GCACGCAGAGGGGACCGAGTCGATCCCCGACTTACGCATTATGCCTCTCCAACCGGCTCAGCACC
* *
26739554 CGTACGCCCGTTTCGTGGGTTGGCTTAG
131 CGCACGCCCGTTTCGTGGGTTGACTTAG
* * ** * * **
26739582 GCATAGGGAGCTCATT-CCATGTCTAAGCCT-CAGCCAAACCGAGGGTTGTGGCAGTGGGACCGA
1 GCATATGGAGTTCATTCCCA-GTCTAAGATTGGA-CCAGACCGAGGGTTGTGGCAGCAGGACCGA
* * * * ** *
26739645 TAGCACGCAGAGGGGGACCG-GGCTGATCCCCGGCTTACGCATTATGCCTCTTCGGCTGGCTCAG
64 CAGCACGCAGA-GGGGACCGAGTC-GATCCCCGACTTACGCATTATGCCTCTCCAACCGGCTCAG
** * * *
26739709 TGCCCGCACGCTCTTTTCGTGGGTTGACTTAT
127 CACCCGCACGCCCGTTTCGTGGGTTGACTTAG
*
26739741 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTT
1 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTT
26739788 ACGACAGTAG
Statistics
Matches: 160, Mismatches: 40, Indels: 11
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.02
158 55 0.34
159 98 0.61
160 4 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGACCGACA
GCACGCAGAGGGGACCGAGTCGATCCCCGACTTACGCATTATGCCTCTCCAACCGGCTCAGCACC
CGCACGCCCGTTTCGTGGGTTGACTTAG
Found at i:26740649 original size:26 final size:26
Alignment explanation
Indices: 26740619--26740671 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26740609 GTTGACTTAG
*
26740619 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
26740645 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
26740671 G
1 G
26740672 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:26741016 original size:26 final size:26
Alignment explanation
Indices: 26740986--26741038 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26740976 GTTGACTTAG
26740986 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26741012 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26741038 G
1 G
26741039 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26741312 original size:159 final size:157
Alignment explanation
Indices: 26741139--26741554 Score: 465
Period size: 159 Copynumber: 2.6 Consensus size: 157
26741129 CGGTTGAGTA
* *
26741139 CCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACC
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TCATTCCA-GTCTAAGCCCCAACC
* * * * **
26741204 GGACCGAGGGTTATGGCAGCAGGACCGACAGCATGCAGAGGGGGATTGGGCCGATACCCGGCTTG
64 GGACCAAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAAGGGGACCGGGCCGATACCCGGCTTG
* *
26741269 GGCATTATGCCTCTTCAG-TAGGCTCAGTG
129 CGCATTATGCCTCTTCAGCT-GGCTCAGCG
* * ** ** *
26741298 CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TCATT-CCAGTCTAAGCCCCAACC
* * ** * * * *
26741363 AGACCAAGGTTTGTGATAGCAGGATCGACAGCACGTAGAAGGGGACCGGGTCGATCCCCGGCTTG
64 GGACCAAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAAGGGGACCGGGCCGATACCCGGCTTG
* * * *
26741428 CGTATTCTGCCTCTTCGGCTGGCTGAGCG
129 CGCATTATGCCTCTTCAGCTGGCTCAGCG
*
26741457 CCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCAGGTCTAAGCCCCAACC
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT-CATTCCA-GTCTAAGCCCCAACC
* * *
26741522 GGACTAAGGGTTGTGGCAGCAAGACTGACAGCA
64 GGACCAAGGGTTGTGGCAGCAGGACCGACAGCA
26741555 GGATCGATAG
Statistics
Matches: 207, Mismatches: 46, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
158 4 0.02
159 199 0.96
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (157 bp):
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTCATTCCAGTCTAAGCCCCAACCGG
ACCAAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAAGGGGACCGGGCCGATACCCGGCTTGCG
CATTATGCCTCTTCAGCTGGCTCAGCG
Found at i:26742056 original size:26 final size:26
Alignment explanation
Indices: 26742027--26742079 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26742017 GTTGACTTAG
26742027 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
26742053 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26742079 G
1 G
26742080 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26742385 original size:159 final size:159
Alignment explanation
Indices: 26742053--26742556 Score: 513
Period size: 158 Copynumber: 3.2 Consensus size: 159
26742043 CCCAGTCTAA
* ** * *
26742053 GCATATGGAGTTCATTCC-TAGTCTAAG-ATTAGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * * * *
26742116 CAGCACGCTGGGGGGTCCGGGCGGATCCCTGGCTTGCACATTCTGCCTCTCCAGCCGGCTGAGCG
65 CAGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCAGCCGGCTAAGCG
* *
26742181 CCTGCACGCCCATTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
26742211 GCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCAGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGATC-GA
* * * *
26742274 CAGCACGCAGAGAGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCTTCTTCAGTCGGCTCAGC
65 CAGCACGCAGAG-GGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCAGCCGGCTAAGC
* * * * * *
26742339 ACCCACACGCTCGTTTTGTGGGTTGACTTAC
129 GCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * ** *
26742370 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCGGACCGGACCAAGGGTTGTGATAGTAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * *
26742433 CAGCATGCA-AGGGTAGATC-GGTCGATCCCCGACTTGCGCATTCTGCCTCTTC-GACCGACTAA
65 CAGCACGCAGAGGG--GACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCAG-CCGGCTAA
26742495 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
127 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
26742528 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
26742557 TACGGAGCTC
Statistics
Matches: 281, Mismatches: 53, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.01
158 149 0.53
159 127 0.45
160 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
AGCACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCAGCCGGCTAAGCGC
CCGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:26742578 original size:26 final size:26
Alignment explanation
Indices: 26742528--26742580 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26742518 GTTGGCTTAG
* *
26742528 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
26742554 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
26742580 G
1 G
26742581 ATTTTTAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:26744205 original size:26 final size:27
Alignment explanation
Indices: 26744158--26744212 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
26744148 GTTGACTTAG
* *
26744158 GCATACGGAAAGTTTATCCCCAGTCTAA
1 GCATACGG-AAGTTCATCCCCAATCTAA
*
26744186 GCATACGG-AGTTCATTCCCAATCTAA
1 GCATACGGAAGTTCATCCCCAATCTAA
26744212 G
1 G
26744213 ATCATACCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 16 0.67
28 8 0.33
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (27 bp):
GCATACGGAAGTTCATCCCCAATCTAA
Found at i:26745189 original size:355 final size:352
Alignment explanation
Indices: 26744122--26745330 Score: 1197
Period size: 355 Copynumber: 3.3 Consensus size: 352
26744112 CTCTGGCGGT
* * * *
26744122 TGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAAAGTTTATCCCCAGTCTAAG
1 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC-GAAAGTTCATCCCCAGTCTAAG
* * * * * *
26744187 CATACGGAGTTCATTCCCAATCTAAGATCATACCTGATCGAGGGTTGCGGCAGCAAGATTGGTAG
65 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGC---A--GGT--
* * * * *
26744252 CACGCAGGGAGGATCGGACCGATCCCTGGCTTGT-GCATTCTACCTCTCCAGTCGGCTGAGCACC
123 -----AGGG-GGACCGGGCTGATCCC-GGCTT-TCGCATTCTGCCTCTCCAG-CCGCTGAGCACC
* * * * *
26744316 CACACGTTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCTAGCCGG
179 CGCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAG-CGA
* * ** * *
26744381 ACCAAGGGTTGTGGCAGCAAGACCGGGCAACAAGATCGGTAGCACGCAGAAGGGGA-CTAGGCTG
243 ACCGAGGGTTGTGGTAGCAAGACC-GGCAACGGGATC-GTAGCACGCAGAGGGGGATCGA-GCTG
** * * *
26744445 ATCCTCGACTAACACATTATGCCTCTCTGGCCTGCCTTTCCGACTGGC
305 ATCCTCGACTTGCGCATTATGCCTCTCTGGCCAGCCTTTCCGGCTGGC
* * * *
26744493 TGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAA-TTCATCCCCAGTTTATGC
1 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAAGTTCATCCCCAGTCTAAGC
* * *
26744557 ATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAAGGTTGCGATAGTAAGATCGGTAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG-A-G--G-G-T--TACGA-C---AGC
* * * * * * * *
26744622 ACGCAGGGGGGACCGAGCTGATCCCCGACTTACACATTATGCCTCTCCAACCGACTGAGCACCCG
119 AGGTA-GGGGGACCGGGCTGAT-CCCGGCTTTCGCATTCTGCCTCTCCAGCCG-CTGAGCACCCG
* * *
26744687 CACGTTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCAGAC
181 CACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCGA-AC
* * * * * * *
26744752 CGAGGGTTGTGGTAGCAGGACTGGCAGCGGGATCGACAGTACGCAGAGGGGGATCGGGCTGATTC
245 CGAGGGTTGTGGTAGCAAGACCGGCAACGGGATCG-TAGCACGCAGAGGGGGATCGAGCTGATCC
* * *
26744817 TCGACTTGCGCATTATGCCACTCTGGCCGGCCTTTCCGGTTGGC
309 TCGACTTGCGCATTATGCCTCTCTGGCCAGCCTTTCCGGCTGGC
* * * *
26744861 TGAGCGTCCGTACGCTCATTTCGTGGGTTGACTTAGGCATAC-AAAGTTCATCCCTAGTCTAAGC
1 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAAGTTCATCCCCAGTCTAAGC
* *
26744925 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGACAGCAGGTAGGGGGAC
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGTAGGGGGAC
* * * * *
26744990 CGGGCTTATCACCGGCTTTCGCATTCTGCCTCTCCAGCCAGCTGAGCGCCCGCACGCTCATTTTA
131 CGGGCTGATC-CCGGCTTTCGCATTCTGCCTCTCCAGCC-GCTGAGCACCCGCACGTTCGTTTCA
26745055 TGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGAACCGAGGGTTGTGGT
194 TGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAG-CGAACCGAGGGTTGTGGT
* ** * *
26745120 AGCAAGACCGACAACGGGATCAGTAGCACATAGAGGGGGATCGAGCTGATCC-CTGGCTTGCGTA
258 AGCAAGACCGGCAACGGGATC-GTAGCACGCAGAGGGGGATCGAGCTGATCCTC-GACTTGCGCA
* ** * * * *
26745184 TTATGCCTCTCCGATCAGCCTCTCTGGCCGGT
321 TTATGCCTCTCTGGCCAGCCTTTCCGGCTGGC
* *
26745216 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG-GAGTTCATCCCCAGTCTAAGC
1 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAAGTTCATCCCCAGTCTAAGC
* ** *
26745280 ATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACA
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACA
26745331 ACAAGATCGG
Statistics
Matches: 694, Mismatches: 118, Indels: 68
0.79 0.13 0.08
Matches are distributed among these distances:
354 2 0.00
355 288 0.41
356 10 0.01
359 1 0.00
360 4 0.01
362 1 0.00
363 1 0.00
364 1 0.00
366 1 0.00
367 4 0.01
368 160 0.23
369 161 0.23
370 10 0.01
371 39 0.06
373 1 0.00
374 1 0.00
375 1 0.00
376 1 0.00
377 2 0.00
378 2 0.00
381 3 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (352 bp):
TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAAGTTCATCCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGTAGGGGGAC
CGGGCTGATCCCGGCTTTCGCATTCTGCCTCTCCAGCCGCTGAGCACCCGCACGTTCGTTTCATG
GGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCGAACCGAGGGTTGTGGTAGC
AAGACCGGCAACGGGATCGTAGCACGCAGAGGGGGATCGAGCTGATCCTCGACTTGCGCATTATG
CCTCTCTGGCCAGCCTTTCCGGCTGGC
Found at i:26745282 original size:26 final size:26
Alignment explanation
Indices: 26745252--26745304 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26745242 GTTGACTTAG
*
26745252 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
26745278 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26745304 G
1 G
26745305 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26746312 original size:26 final size:26
Alignment explanation
Indices: 26746283--26746335 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26746273 GTTGACTTAG
*
26746283 GCATACGGATTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26746309 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26746335 G
1 G
26746336 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26746589 original size:26 final size:26
Alignment explanation
Indices: 26746553--26746605 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26746543 GTTGACTTAG
*
26746553 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
26746579 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
26746605 G
1 G
26746606 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:26746944 original size:26 final size:26
Alignment explanation
Indices: 26746908--26746958 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26746898 TTGACTTAAG
26746908 CATACGAAGTTCATCCCCAGTCTAAA
1 CATACGAAGTTCATCCCCAGTCTAAA
* *
26746934 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATCCCCAGTCTAA
26746959 GATCAGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAGTCTAAA
Found at i:26747515 original size:317 final size:317
Alignment explanation
Indices: 26746934--26747520 Score: 659
Period size: 317 Copynumber: 1.9 Consensus size: 317
26746924 CCAGTCTAAA
* * * *
26746934 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACGGCAGGATCAGTAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAAGGTTGCGACAGCAGGATCAGCAG
* * * * * ** *
26746999 CACGTAGGAGGGTCCGAGCTGATCCCCAGCTTGCAGATGTTGCCTCTCTGGCCGACTGAGTGCCT
66 CACGAAGGAGGGACCGAGCTGATCCCCAGCTTGCACATGTTGCCTCTCCGGCAGACTGAGCACCC
* **
26747064 ACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCGTGTCTAAGCCCCAATCAGA
131 ACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGCTCATTCCACGTCTAAGCCCCAATCAGA
* * **
26747129 CCCAGGGTTATGGCAACGAGACCGGCAGCACGCAGAGGGGGATCGGGCAGATCCCCGGCTTACGC
196 CCCAGGGTTATGGCAACGAGACCGACAGCACGCAGAGGGGGACCAAGCAGATCCCCGGCTTACGC
26747194 ATTATGCCTCATCAGCTGGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTATG
261 ATTATGCCTCATCAGCTGGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTATG
* *
26747251 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAAGGTTGTGACAGCAGGATC-GACA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAAGGTTGCGACAGCAGGATCAG-CA
* * ** *
26747315 GCACGCAAGGGGGGACC-AGGTCGATCCCC-GACTTGCACAT-TCTGCCTCTCCGGCAGGTTGTG
65 GCACG-AAGGAGGGACCGAGCT-GATCCCCAG-CTTGCACATGT-TGCCTCTCCGGCAGACTGAG
* * * **
26747377 CACCCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCC-
126 CACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGCT-CATTCCACGTCTAAGCCCCA
* * ** * * * ** *
26747440 GTCGGACTGAGGGTTATGGC-A-GTAGGATCGACAGCATGCAGAGGGGGACCAAGCTGATGTCTG
190 ATCAGACCCAGGGTTATGGCAACG-A-GACCGACAGCACGCAGAGGGGGACCAAGCAGATCCCCG
**
26747503 GCTTGGGCATTATGCCTC
253 GCTTACGCATTATGCCTC
26747521 TCCAGTCGGC
Statistics
Matches: 219, Mismatches: 43, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
315 1 0.00
316 3 0.01
317 127 0.58
318 88 0.40
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (317 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAAGGTTGCGACAGCAGGATCAGCAG
CACGAAGGAGGGACCGAGCTGATCCCCAGCTTGCACATGTTGCCTCTCCGGCAGACTGAGCACCC
ACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGCTCATTCCACGTCTAAGCCCCAATCAGA
CCCAGGGTTATGGCAACGAGACCGACAGCACGCAGAGGGGGACCAAGCAGATCCCCGGCTTACGC
ATTATGCCTCATCAGCTGGCTCAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTATG
Found at i:26747618 original size:26 final size:26
Alignment explanation
Indices: 26747582--26747632 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26747572 TGACTTAGGC
*
26747582 ATACGGAGTTCATCCCCAGTCTAAGG
1 ATACGGAGTTCATCCCCAGCCTAAGG
*
26747608 ATACGGAGTTCATTCCCAGCCTAAG
1 ATACGGAGTTCATCCCCAGCCTAAG
26747633 ATCAGATCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGCCTAAGG
Found at i:26747920 original size:355 final size:344
Alignment explanation
Indices: 26747250--26748302 Score: 1027
Period size: 355 Copynumber: 3.0 Consensus size: 344
26747240 GTTGACTTAT
* * * *
26747250 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAAGGTTGTGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GAACCGAGGGTTGCGACAGCAGGATCGACA
* * *
26747315 GCACGCAAGGGGGGACCAGGTCGATCCCC-GACTTGCACATTCTGCCTCTCCG-GCAGGT-TGTG
65 GCACG-AA-GGGGGACCAGGTCGATCCCCAG-CTTGCACATTCTGCCTCTCCGACCAGCTGAGTG
* *
26747377 CACCCGCATGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCC-G
127 --CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAG
* * * * ** * *
26747441 TCGGACTGAGGGTTATGGCAG-T--AG-GATCGACAGCATGCAGAGGGGGACCAAGCTGATGTCT
190 TCGGACCGAGGGTTGTGGCAGATGCAGAGATCGACAGCACGCAGAGGGGGATCGGGCTGATCTCC
** ***
26747502 GGCTTGGGCATTATGCCTCTCCAGTCGGCCTCTCTGGCCGACTGAGTGCCCGCACAATCATTTCG
255 GGCTT-GGCATTATG------C-GT----CTC-C-GGCCGACTGAGCACCCGCATGCTCATTTCG
26747567 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
306 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * *
26747606 GGATACGGAGTTCATTCCCAGCCTAAGATCAGATCGAATCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAACCGAGGGTTGCGACAGCAGGATCGACA
*
26747671 GCACGTAGAGGGGACCAGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCAGCTGAGTGCC
65 GCACGAAG-GGGGACCAGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCAGCTGAGTGCC
* *
26747736 CGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGTCGG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGG
* *
26747801 ACCGAGGGTTGTGTTAGCAGGATCGGCAGTGAGATCGACAGCACACAGAGAGGGATCGGGCTGAT
194 ACCGAGGGTTGTG---GCA-GAT--GCA--GAGATCGACAGCACGCAGAGGGGGATCGGGCTGAT
* * *
26747866 CTCCGGCTTGCACATTATGCGTCTCCGGCCGATTGAGCACCCGTATGCTCATTTCGTGGGTTGAC
251 CTCCGGCTTG-GCATTATGCGTCTCCGGCCGACTGAGCACCCGCATGCTCATTTCGTGGGTTGAC
* *
26747931 TTAGGCATACGAAGTTCATCACCAGTCTAA
315 TTAGGCATACGGAGTTCATCCCCAGTCTAA
* * ** *
26747961 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCATGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGA-ACCGAGGGTTGCGACAGCAGGATCGACA
* * * * * * * * * * **
26748026 GCACGCAGGGGGTCCGGGCCGAT-CCTAGGCTTGCACATTGTACCTCTCCAACCGGTTGAGCACC
65 GCACGAAGGGGGACCAGGTCGATCCCCA-GCTTGCACATTCTGCCTCTCCGACCAGCTGAGTGCC
* * * * ** **
26748090 CGGACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCGTAACCG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCCAGTCG
* * * *
26748154 GACCGAGGGTTGTGGC--A-GC-GAGATCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCAGC
193 GACCGAGGGTTGTGGCAGATGCAGAGATCGACAGCACGCAGAGGGGGATCGGGCTGATCTCCGGC
* * * * * * * * *
26748215 TTGGCATTATGCCTCTTCAGTCGACTCAGCATCCGCATGCTCGTTTCATGGGTTGACTTATGCAT
258 TTGGCATTATGCGTCTCCGGCCGACTGAGCACCCGCATGCTCATTTCGTGGGTTGACTTAGGCAT
*
26748280 ACGGAGTTCATTCCCAGTCTAA
323 ACGGAGTTCATCCCCAGTCTAA
26748302 G
1 G
26748303 ATCAGACCGA
Statistics
Matches: 587, Mismatches: 88, Indels: 59
0.80 0.12 0.08
Matches are distributed among these distances:
341 70 0.12
342 39 0.07
345 2 0.00
348 1 0.00
351 2 0.00
353 3 0.01
354 110 0.19
355 219 0.37
356 82 0.14
357 7 0.01
359 3 0.01
360 1 0.00
361 3 0.01
362 1 0.00
365 1 0.00
367 2 0.00
368 41 0.07
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (344 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAACCGAGGGTTGCGACAGCAGGATCGACAG
CACGAAGGGGGACCAGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCAGCTGAGTGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGAC
CGAGGGTTGTGGCAGATGCAGAGATCGACAGCACGCAGAGGGGGATCGGGCTGATCTCCGGCTTG
GCATTATGCGTCTCCGGCCGACTGAGCACCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACG
GAGTTCATCCCCAGTCTAA
Found at i:26747972 original size:26 final size:26
Alignment explanation
Indices: 26747935--26747987 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26747925 GTTGACTTAG
26747935 GCATACGAAGTTCA-TCACCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
*
26747961 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
26747987 G
1 G
26747988 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:26748321 original size:158 final size:157
Alignment explanation
Indices: 26747961--26748460 Score: 453
Period size: 158 Copynumber: 3.2 Consensus size: 157
26747951 ACCAGTCTAA
** * *
26747961 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACC-AGACCGAGGGTTACGGTAGCATGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGA-ACCGAGGGTTGTGGAAGCAGGATCGA
* * * ** **
26748024 CAGCACGC-AGGGGG-TCCGGGCCGATCCTAGGCTTGCACATTGTACCTCTCCAACCGGTTGAGC
64 CAGCACGCAAGGGGGAT-CGGGCCGATCCCA-GCTTGCGCATTATACCTCTCCAGTCGACTGAGC
* * *
26748087 ACCCGGACGCCCGTTTCGTGGGTTGGCTTAG
127 ACCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
26748118 GCATAGGGAGCTCATTCCATGTCTAAG--CCGTAACCGGACCGAGGGTTGTGGCAGC-GAGATCG
1 GCATACGGAGTTCATTCCATGTCTAAGATCAG--ACCGAACCGAGGGTTGTGGAAGCAG-GATCG
* * * *
26748180 GCAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTG-GCATTATGCCTCTTCAGTCGACTCAG
63 ACAGCACGCA-AGGGGGATCGGGCCGAT-CCCAGCTTGCGCATTATACCTCTCCAGTCGACTGAG
* * * *
26748244 CATCCGCATGCTCGTTTCATGGGTTGACTTAT
126 CACCCGCACGCTCGTTTCATGGGTTGGCTTAG
* **
26748276 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGAACCAAGGGTTGTTAAAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGAACCGAGGGTTGTGGAAGCAGGATCGAC
* * * * * * * * * *
26748340 AGCACACAAAGGGGA-CTGAGTCGATCCCTGGTATGTGCATTCTACCTCTCCGGTCGACTGAGCG
65 AGCACGCAAGGGGGATC-GGGCCGATCCCAGCT-TGCGCATTATACCTCTCCAGTCGACTGAGCA
*
26748404 CCCGCACACTCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
26748434 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
26748461 CATACGGAGC
Statistics
Matches: 274, Mismatches: 52, Indels: 33
0.76 0.14 0.09
Matches are distributed among these distances:
155 2 0.01
156 9 0.03
157 69 0.25
158 164 0.60
159 24 0.09
160 6 0.02
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGAACCGAGGGTTGTGGAAGCAGGATCGACA
GCACGCAAGGGGGATCGGGCCGATCCCAGCTTGCGCATTATACCTCTCCAGTCGACTGAGCACCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:26748484 original size:26 final size:26
Alignment explanation
Indices: 26748434--26748486 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26748424 GTTGGCTTAG
* **
26748434 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCAAATCTAA
26748460 GCATACGGAGCTCATTCCAAATCTAA
1 GCATACGGAGCTCATTCCAAATCTAA
26748486 G
1 G
26748487 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCAAATCTAA
Found at i:26749645 original size:368 final size:368
Alignment explanation
Indices: 26748961--26749686 Score: 858
Period size: 368 Copynumber: 2.0 Consensus size: 368
26748951 AATGAAAACC
* * *
26748961 GAGGGTTGTGGCAGCAGGACCGACAGCGAGATCGACAGCACGCAGAGAGGGACCGGGCTGTTCCC
1 GAGGGTTATGGCAGCAGGACCGACAGCGAGATCGACAGCACACAGAGAGGGACCGGGCTGATCCC
* * * * *
26749026 TGGCTTACGCATTATGCCTCTCTAGCCGACCTCTTCGGCCGACTGAGCGCTCACACACTCGTTTC
66 TGACTTACACATTATGCCTCTCGAGCCGACCTCTTCGACCGACTGAGCGCCCACACACTCGTTTC
* * * *
26749091 ATGGGTTGACTTAGGCATTCGGAGTTCATTCCTAGTCTAAGCATACATAGTTCATTCCCAGTCAA
131 ATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACATAGTTCATTCCCAGTCAA
* * * * ** * *
26749156 AGATCGGATCGGATCGAGGGTTGTGGTAGCAGGATCAGTAGCACGCAAGAGGGATCGGGTCGATC
196 AGATCAGACCGGACCGAGGGATACGATAGCAGGATCAGCAGCACGCAAGAGGGATCGGGTCGATC
* * * ** * *
26749221 CCTGGCTTGCGTATTCTGCCTCTCCGATCGACTGAGTGCCCGTACGCTCTTTTCGTGGGTTGGCT
261 CCTGGCTTGCGCATTCTGCCTCTCCGAGCCACTGAGCCCCCGCACGCTCGTTTCGTGGGTTGGCT
* *
26749286 TAGGCATACGGAG-TACATTCCACGTTTAAGCCCCAGCCAGACT
326 TAGGCACACGGAGCT-CATTCCACGTCTAAGCCCCAGCCAGACT
* * * * *
26749329 GAGGGTTATGGCAGTAGGACCGACAGC-AGGATTGGCAGCACACAGAGGGGGATCGGGCTGATCC
1 GAGGGTTATGGCAGCAGGACCGACAGCGA-GATCGACAGCACACAGAGAGGGACCGGGCTGATCC
* * ** *
26749393 CTGACTTGCACATTATGCCTCTCCGA-CC-AGCCTCTTCGACCGGCTGAGCGCCCGTACGCTCGT
65 CTGACTTACACATTATGCCTCT-CGAGCCGA-CCTCTTCGACCGACTGAGCGCCCACACACTCGT
* * * *
26749456 TTCATGGGTTGACTTAGGCGTACAGAGTTCATCCCCCGTCTAAGCATTC-TAAGTTCATTTCCAG
128 TTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAT-AGTTCATTCCCAG
* * *
26749520 TCTAAGATCAGACCGGGACCGAGGGATACGATAGTAGGATC-GACAGCACGC-AGAGGGGATTGG
192 TCAAAGATCAGACC-GGACCGAGGGATACGATAGCAGGATCAG-CAGCACGCAAGA-GGGATCGG
* *
26749583 GTCGATCCC-GGCTTGCGCATTCTGTCTCT-CTAGCCAGCTGAGCCCCCGCACGCTCGTTTCGTG
254 GTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGAGCCA-CTGAGCCCCCGCACGCTCGTTTCGTG
* *
26749646 GGTTGGCTTAGGCACAGGGAGCTCATTCCATGTCTAAGCCC
318 GGTTGGCTTAGGCACACGGAGCTCATTCCACGTCTAAGCCC
26749687 TAGTCGGACC
Statistics
Matches: 299, Mismatches: 50, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
367 7 0.02
368 246 0.82
369 46 0.15
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (368 bp):
GAGGGTTATGGCAGCAGGACCGACAGCGAGATCGACAGCACACAGAGAGGGACCGGGCTGATCCC
TGACTTACACATTATGCCTCTCGAGCCGACCTCTTCGACCGACTGAGCGCCCACACACTCGTTTC
ATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACATAGTTCATTCCCAGTCAA
AGATCAGACCGGACCGAGGGATACGATAGCAGGATCAGCAGCACGCAAGAGGGATCGGGTCGATC
CCTGGCTTGCGCATTCTGCCTCTCCGAGCCACTGAGCCCCCGCACGCTCGTTTCGTGGGTTGGCT
TAGGCACACGGAGCTCATTCCACGTCTAAGCCCCAGCCAGACT
Found at i:26750020 original size:26 final size:26
Alignment explanation
Indices: 26749970--26750022 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26749960 GTTCGCTTAG
* *
26749970 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
26749996 GCATACGGAGCTCATT-CATAATCTAA
1 GCATACGGAGCTCATTCCAT-ATCTAA
26750022 G
1 G
26750023 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:26751034 original size:26 final size:26
Alignment explanation
Indices: 26751004--26751056 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26750994 GTTTACTTAG
*
26751004 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
26751030 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
26751056 G
1 G
26751057 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:26751332 original size:159 final size:158
Alignment explanation
Indices: 26751070--26751371 Score: 356
Period size: 159 Copynumber: 1.9 Consensus size: 158
26751060 AGATTGGATC
* * **
26751070 GAGGGTTGCGGTAGCAGGATCGATAGCACGTAGGGGGGACTGGATCGATCCTGGGCTTGTGCATT
1 GAGGGTTGCGGTAACAGGATCGATAGCACGTAGGGGGGACTGGATCGATCCTCGGCTTACGCATT
* * * ** *
26751135 CTGCCTCTCCGACCGACTGAGCGCATGCACGCCCGTTTCGTGGGTTGGCTTTGGCATAGGGAGCT
66 ATGCCTCTCCGACCGACTGAGCGCACGCACGCCCGTTTCGTGGGTTGACTTACGCATACGGAGCT
26751200 CAT-TCCATGTCTACACCCCAGTCGGACT
131 CATCTCCA-GTCTACACCCCAGTCGGACT
* * * * *
26751228 GAGGGTTGTGGTAACGGGATCGGTAGCACGTAGAGGGGGA-TCGGGTTGATCCTCGGCTTACGCA
1 GAGGGTTGCGGTAACAGGATCGATAGCACGTAG-GGGGGACT-GGATCGATCCTCGGCTTACGCA
* * * * * * *
26751292 TTATGCCTTTTCGATCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTACGCATACGGAG
64 TTATGCCTCTCCGACCGACTGAGCGCACGCACGCCCGTTTCGTGGGTTGACTTACGCATACGGAG
*
26751357 TTCATCTCCAGTCTA
129 CTCATCTCCAGTCTA
26751372 AGCATACAGA
Statistics
Matches: 118, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
158 30 0.25
159 84 0.71
160 4 0.03
ACGTcount: A:0.17, C:0.25, G:0.33, T:0.26
Consensus pattern (158 bp):
GAGGGTTGCGGTAACAGGATCGATAGCACGTAGGGGGGACTGGATCGATCCTCGGCTTACGCATT
ATGCCTCTCCGACCGACTGAGCGCACGCACGCCCGTTTCGTGGGTTGACTTACGCATACGGAGCT
CATCTCCAGTCTACACCCCAGTCGGACT
Found at i:26751376 original size:26 final size:26
Alignment explanation
Indices: 26751347--26751399 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26751337 GTTGACTTAC
*
26751347 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
26751373 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
26751399 G
1 G
26751400 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:26751573 original size:343 final size:343
Alignment explanation
Indices: 26750933--26751716 Score: 859
Period size: 343 Copynumber: 2.3 Consensus size: 343
26750923 GACCGGGCTG
* * * * * * * * * *
26750933 ATCCCAGGCTTGCACATTATGCCTCTCCAGCCGGTTGAACACCCGTACGCTCGTTTCATGGGTTT
1 ATCCCCGGCTTACGCATTATGCCTCTTCGGCTGGCTCAACGCCCGTACGCTCGTTTCATGGGTTG
* *
26750998 ACTTAGGCATACGGAGTTCATC-CCTAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAG
66 ACTTACGCATACGGAGTTCATCTCC-AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
** * * * * ** * *
26751062 ATTGGATCGAGGGTTGCGGTAGCAGGATCGATAGCACGTAGGGGGGACTGGATCGATCCTGGGCT
130 ACCGGATCGAAGGTTGCGGCAGCAAGATCGATAGCACGCAAAGGGGACTGGATCAATCCTGAGCT
* * * *
26751127 TGTGCATTCTGCCTCTCCGACCGACTGAGCGCATGCACGCCCGTTTCGTGGGTTGGCTTTGGCAT
195 TGCGCATTCTGCCTCTCCGACCGACTGAGCGCACGCACGCCCGTTTCCTGGGTTGGCTTAGGCAT
* * * **
26751192 AGGGAGCTCATTCCATGTCTACACCCCAGTCGGACTGAGGGTTGTGGTAACGGGATCGGTAGCAC
260 AGGGAGCTCATTCCATGTCTACACCCCAGCCGGACTGAGGGTTGTGGCAACGGGACCGACAGCAC
* ** * * ***
26751257 GTAGAGGGGGATCGGGTTG
325 GCAGAGAAGGACCGAGCCA
* * * * * *
26751276 ATCCTCGGCTTACGCATTATGCCTTTTC-GATCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTT
1 ATCCCCGGCTTACGCATTATGCCTCTTCGGCT-GGCTCAACGCCCGTACGCTCGTTTCATGGGTT
26751340 GACTTACGCATACGGAGTTCATCTCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-G
65 GACTTACGCATACGGAGTTCATCTCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
* * * *
26751404 AACCGGA-CTTAAGGTTGCGGCAGTAAGATC-AGTAGCATGCAAAGGGGA-TCGGGTCAATCCCT
130 -ACCGGATC-GAAGGTTGCGGCAGCAAGATCGA-TAGCACGCAAAGGGGACT-GGATCAAT-CCT
* * * * **
26751466 -AGCTTGCGCATTCTGCCTCTCTGGCC-AGTTGAGCGCCCGCACGCCCGTTTCCTGGGTTTTCTT
190 GAGCTTGCGCATTCTGCCTCTCCGACCGA-CTGAGCGCACGCACGCCCGTTTCCTGGGTTGGCTT
26751529 AGGCATAGGGAGCTCATTCCATGTCTA-AGCCCCAGCCGGACTGAGGGTTGTGGCAACGGGACCG
254 AGGCATAGGGAGCTCATTCCATGTCTACA-CCCCAGCCGGACTGAGGGTTGTGGCAACGGGACCG
26751593 ACAGCACGCAGAGAAGGACCGAGCCA
318 ACAGCACGCAGAGAAGGACCGAGCCA
* * * *
26751619 ATCCCCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAATGCCCGCACGCTCATTTCATGGGTTG
1 ATCCCCGGCTTACGCATTATGCCTCTTCGGCTGGCTCAACGCCCGTACGCTCGTTTCATGGGTTG
* *
26751684 ACTTATGCATACGAAGTTCAT-TCTCAGTCTAAG
66 ACTTACGCATACGGAGTTCATCTC-CAGTCTAAG
26751717 ATCGGACCAG
Statistics
Matches: 366, Mismatches: 64, Indels: 22
0.81 0.14 0.05
Matches are distributed among these distances:
342 9 0.02
343 350 0.96
344 7 0.02
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (343 bp):
ATCCCCGGCTTACGCATTATGCCTCTTCGGCTGGCTCAACGCCCGTACGCTCGTTTCATGGGTTG
ACTTACGCATACGGAGTTCATCTCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
CCGGATCGAAGGTTGCGGCAGCAAGATCGATAGCACGCAAAGGGGACTGGATCAATCCTGAGCTT
GCGCATTCTGCCTCTCCGACCGACTGAGCGCACGCACGCCCGTTTCCTGGGTTGGCTTAGGCATA
GGGAGCTCATTCCATGTCTACACCCCAGCCGGACTGAGGGTTGTGGCAACGGGACCGACAGCACG
CAGAGAAGGACCGAGCCA
Found at i:26751818 original size:26 final size:26
Alignment explanation
Indices: 26751782--26751834 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26751772 GTTGAATTAG
26751782 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26751808 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26751834 G
1 G
26751835 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26752195 original size:26 final size:24
Alignment explanation
Indices: 26752159--26752209 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 24
26752149 GCAAACAGAA
26752159 TTCATCCCCAGTCTAAGCATACGGAT
1 TTCATCCCCAGTCTAAG-AT-CGGAT
*
26752185 TTCATTCCCAGTCTAAGATCGGAT
1 TTCATCCCCAGTCTAAGATCGGAT
26752209 T
1 T
26752210 GGATCGAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 6 0.25
25 2 0.08
26 16 0.67
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.31
Consensus pattern (24 bp):
TTCATCCCCAGTCTAAGATCGGAT
Found at i:26752554 original size:26 final size:26
Alignment explanation
Indices: 26752517--26752569 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26752507 GTTGACTTAG
*
26752517 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
26752543 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
26752569 G
1 G
26752570 ATTAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:26752602 original size:368 final size:365
Alignment explanation
Indices: 26751756--26752728 Score: 1194
Period size: 368 Copynumber: 2.6 Consensus size: 365
26751746 GGATCGATAG
* *
26751756 CACGCTCGTTTCGTGGGTTGAATTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* *
26751821 ATTCCCAGTCTAAGATCGGATCAGATCGAAGGTTGCGGCAGCAGGATCGGTAGCACGCAGGAGGG
66 ATTCCCAGTCTAAGATCGGAT-GGATCGAAGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGG
* * * *
26751886 ACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCTCCCGCATGCTCATTT
130 ACCGGGCCGATCCCTGGCTTGCGCATTCTG-CTCTCTGGTCGGCTGAGCGCCCGCATGCTCGTTT
* * * ** *
26751951 CGTGGGTTGGCTTTGGCATATGGAGTACATTTCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTG
194 CGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCACCCGAACCGAGGGTTGTG
* * *
26752016 GCAGTAGGACGACAGCGGGATCGACAGAACGCAGAAGAGGACCGAGCTAATCCTCAGCTTACGCA
259 GCAGCAGGACGACAGCGGGATCGACAGAACGCAGAAGAGGACCGAGCTAATCCCCAGCCTACGCA
* * *
26752081 ATATGCCTCTTTGGTCGGACTCTCCGTTCGATTGAGCGCCCA
324 ATATGCCTCTTTGGCCGGACTCTCCGGTCGACTGAGCGCCCA
* * * * * *
26752123 TACGCTCGTTTTGTGGGTTGACTTAGGCAAACAGAATTCATCCCCAGTCTAAGCATACGGATTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * *
26752188 ATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTACGGCGGCAGGATCGGTAGCACGCAGGGGGG
66 ATTCCCAGTCTAAGATCGGA-TGGATCGAAGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGG
* * ** * * *
26752253 ACCAGGCCGATTCCTGATTTGCGCATTCTTGCTCTCTGGTCGACTGAACGCCCGCATGCTTGTTT
130 ACCGGGCCGATCCCTGGCTTGCGCATTC-TGCTCTCTGGTCGGCTGAGCGCCCGCATGCTCGTTT
* *
26752318 CGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTACCCGAACTGAGGGTTGTG
194 CGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCACCCGAACCGAGGGTTGTG
** * * * * ** * *
26752383 GCAGCAGGACTGGTAGCGGGATCGGCAGCATGTAG-AGAGGGATTGAGCTAATCCCCGGCCTACT
259 GCAGCAGGAC-GACAGCGGGATCGACAGAACGCAGAAGA-GGACCGAGCTAATCCCCAGCCTACG
** * *
26752447 CGTTATGCCTCTTTGGCCGGCCTCTCCGGTCGGCTGAGCGCCCA
322 CAATATGCCTCTTTGGCCGGACTCTCCGGTCGACTGAGCGCCCA
* * *
26752491 CACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCTCAGTCTAAGCATACGAAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
** * ** *
26752556 ATTCCCAGTCTAAGATTAGACTGGACCGAAGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGTG
66 ATTCCCAGTCTAAGATCGGA-TGGATCGAAGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGG
* * * * * * * * *
26752621 ACCGGGCCGATCCCCGGCTTGCCCATTCTGCCCTTTTGACTGGCTGAGTGCCCGCACGCCCGTTT
130 ACCGGGCCGATCCCTGGCTTGCGCATTCTGCTCTCTGGTC-GGCTGAGCGCCCGCATGCTCGTTT
* * *
26752686 CTTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGC
194 CGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGC
26752729 GCTAGTTGGA
Statistics
Matches: 510, Mismatches: 90, Indels: 11
0.83 0.15 0.02
Matches are distributed among these distances:
367 243 0.48
368 266 0.52
369 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (365 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGATGGATCGAAGGTTGCGGCAGCAGGATCGGTAGCACGCAGGGGGGA
CCGGGCCGATCCCTGGCTTGCGCATTCTGCTCTCTGGTCGGCTGAGCGCCCGCATGCTCGTTTCG
TGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCACCCGAACCGAGGGTTGTGGC
AGCAGGACGACAGCGGGATCGACAGAACGCAGAAGAGGACCGAGCTAATCCCCAGCCTACGCAAT
ATGCCTCTTTGGCCGGACTCTCCGGTCGACTGAGCGCCCA
Found at i:26754966 original size:26 final size:26
Alignment explanation
Indices: 26754937--26754989 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26754927 GTTGACCTAG
*
26754937 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
26754963 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
26754989 G
1 G
26754990 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:26755335 original size:26 final size:26
Alignment explanation
Indices: 26755305--26755357 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26755295 GTTCACTTAG
*
26755305 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
26755331 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26755357 G
1 G
26755358 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26755834 original size:26 final size:26
Alignment explanation
Indices: 26755804--26755882 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
26755794 GTTGGCTTAG
26755804 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
26755830 GCATACGGGGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
26755856 GCATACGGAGCTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
26755882 G
1 G
26755883 ATTTTGAGCC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 46 0.94
27 3 0.06
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:26756582 original size:26 final size:26
Alignment explanation
Indices: 26756553--26756605 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26756543 GTTGACCTAG
*
26756553 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
26756579 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
26756605 G
1 G
26756606 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:26756951 original size:26 final size:26
Alignment explanation
Indices: 26756921--26756973 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26756911 GTTCACTTAG
*
26756921 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
26756947 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26756973 G
1 G
26756974 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26757450 original size:26 final size:26
Alignment explanation
Indices: 26757420--26757498 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
26757410 GTTGGCTTAG
26757420 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
26757446 GCATACGGGGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
26757472 GCATACGGAGCTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
26757498 G
1 G
26757499 ATTTTGAGCC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 46 0.94
27 3 0.06
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:26758197 original size:26 final size:26
Alignment explanation
Indices: 26758167--26758219 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26758157 ATTGACTTAG
26758167 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCCT-AGTCTAA
26758193 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
26758219 G
1 G
26758220 ATCGGACCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:26758810 original size:355 final size:354
Alignment explanation
Indices: 26758124--26759030 Score: 979
Period size: 355 Copynumber: 2.5 Consensus size: 354
26758114 CCTGCCTCTC
* * * * *
26758124 TGTCAACTGAGCGCCCGCACAGTCGTTTCATGGATTGACTTAGGCATACGGAGTTCATCCTCAGT
1 TGTCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
* ** * *
26758189 CTAAGCATACGGAGTTCA-TTCCTAGTCTAAGATCGGACCACATCGAGGGTTGCGA-CGTAGGAT
66 CTAAGCATACGGAGTTCATTTCC-AGTCTAAGATCGGATCGGATCGA-GGTTGCGATAGCAGGAT
* * *
26758252 CAGCAGCACGTAGGGGGGACTAGGCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
129 C-GCAGCACGTAGGGGGGACCAGGCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAA
* * *
26758317 CACCCGCGCGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCATGACTAAGCCCCAG
193 CACCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTACATTCCATGACTAAGCCCCAG
* ** * * *
26758382 TCGGACCGAGGGTTGTGCCAGCAGGACCGACAGCAGGATCCGCAGCATGCAGAAGGGGACTGGGC
258 CCAAACCGAGGGTTATGCCAGCAGGACCGACAGCAGGATCCGCAGCACGCAGAAGGGGACTGAGC
*
26758447 TAATCCTCGACTTGCAG-ATTATGCCTTTT-CG
323 TAATCCTCGACTTAC-GCATTATGCCTTTTCCG
* * *
26758478 -GTCGACTGAGCGCCCGTACCCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
1 TGTCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
* * * *
26758542 CTAAGCATATGAAGTTCATTTCCAGTCTAAGATCGGATTGGATTGAGTGTTGCGATAGCAGGATC
66 CTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGATCGAG-GTTGCGATAGCAGGATC
*
26758607 GTCAGCACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAA
130 G-CAGCACGTAGGGGGGACCAGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAA
* * * * * *
26758672 TACCTGCACGCTTGTTTTATCGGTTGGCTTAGGCATACGGAGTACATTCCACT-TCTAAGCCCCA
193 CACCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTACATTCCA-TGACTAAGCCCCA
* * * * * *
26758736 GCCAAACTGAGGGTTATGGCAGCAGGACCAGTA-A-CGGGAT-CGACAGGACGTAGAGGGGGA-T
257 GCCAAACCGAGGGTTATGCCAGCAGGACC-G-ACAGCAGGATCCG-CAGCACGCAGAAGGGGACT
* *
26758797 CGAGCTGATCCTCGGCTTACGCATTATGCCTTTTCGGCCGACG
319 -GAGCTAATCCTCGACTTACGCATTATGCCTTTT----C--CG
* * *
26758840 TTCTTCAGTCGGCTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
1 ----T--GTCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
* * * ** * *
26758905 CCCAATCTAAGCATACGGAGTTCATTCCCAGTGTAAGATTAGATCGGACCGAAGGTTACGATAGC
60 CCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGATCG-AGGTTGCGATAGC
* * *
26758970 AGGATCGACAACACGTATGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCG
124 AGGATCG-CAGCACGTAGGGGGGACCAGG-CGATCCCCGGCTTGCGCATTCTGCCTCTCCG
26759031 GTTGGTTGAG
Statistics
Matches: 460, Mismatches: 67, Indels: 37
0.82 0.12 0.07
Matches are distributed among these distances:
352 1 0.00
353 98 0.21
354 34 0.07
355 160 0.35
356 3 0.01
357 1 0.00
362 2 0.00
369 159 0.35
370 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (354 bp):
TGTCGACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
CTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGATCGAGGTTGCGATAGCAGGATCG
CAGCACGTAGGGGGGACCAGGCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAACAC
CCGCACGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTACATTCCATGACTAAGCCCCAGCCA
AACCGAGGGTTATGCCAGCAGGACCGACAGCAGGATCCGCAGCACGCAGAAGGGGACTGAGCTAA
TCCTCGACTTACGCATTATGCCTTTTCCG
Found at i:26759285 original size:159 final size:158
Alignment explanation
Indices: 26758915--26759323 Score: 374
Period size: 159 Copynumber: 2.6 Consensus size: 158
26758905 CCCAATCTAA
* * * * *
26758915 GCATACGGAGTTCATTCCCAGTGTAAGATTAGATCGGACCGAAGGTTACGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGCAGGACCGACA
* * * * ** * * *
26758980 ACACGTATGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTTGGTTGAGTGCC
66 ACACGCAAGGGGGACCAGGTCAATCCCAGGCTTACGCATTAAGCCTCTCCGGCTGGCTCAGTGCC
* * *
26759045 CATACGCCCATTTCGTGGGTTGGCTTAG
131 CACACACCCATTTCGTGGGTTGACTTAG
* * ** * ** ** * *
26759073 GCATAGGGAGCTCATT-CCATGTCTAAGCCGCAG-TCGGATCGAGCCTTGTGGTAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTACGGTAGCAGGACCGA
* * * *
26759136 CAGCACGCAGAGGGGGATCAGG-CTAATCCCAGGCTTGCGCATTAAGCCTCTTCGGCTGGCTCAG
64 CAACACGCA-AGGGGGACCAGGTC-AATCCCAGGCTTACGCATTAAGCCTCTCCGGCTGGCTCAG
* * * *
26759200 TGCCCGCACACTCATTTTGTGGGTTGACTTAT
127 TGCCCACACACCCATTTCGTGGGTTGACTTAG
* * *
26759232 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGCAGGACCGACA
* * * *
26759297 GCATGCAGGGGGGACCAGGTCGATCCC
66 ACACGCAAGGGGGACCAGGTCAATCCC
26759324 CGACATGCGC
Statistics
Matches: 190, Mismatches: 54, Indels: 14
0.74 0.21 0.05
Matches are distributed among these distances:
157 3 0.02
158 66 0.35
159 118 0.62
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGTAGCAGGACCGACA
ACACGCAAGGGGGACCAGGTCAATCCCAGGCTTACGCATTAAGCCTCTCCGGCTGGCTCAGTGCC
CACACACCCATTTCGTGGGTTGACTTAG
Found at i:26760217 original size:26 final size:26
Alignment explanation
Indices: 26760179--26760234 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
26760169 TGGGTTGACT
26760179 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* * * *
26760205 TAAGCGTATGGAGTTCATTCTCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
26760231 TAAG
1 TAAG
26760235 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:26760408 original size:26 final size:26
Alignment explanation
Indices: 26760379--26760431 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26760369 GTTGACTTAG
* *
26760379 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
26760405 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26760431 G
1 G
26760432 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26760781 original size:26 final size:26
Alignment explanation
Indices: 26760745--26760797 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26760735 GTTGACTTAG
26760745 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
26760771 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26760797 G
1 G
26760798 ATTGGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26760817 original size:366 final size:367
Alignment explanation
Indices: 26760316--26760982 Score: 905
Period size: 366 Copynumber: 1.8 Consensus size: 367
26760306 GTGCATTCTG
*
26760316 CCTCTCCGATCAGCCTCTCCAGCCGACTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGC
1 CCTCTCCGATCAGCCTCTCCAGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * *
26760381 ATACGGAGTTCATCCCCAGTTTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGATCG
66 ATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCG
** *
26760446 AGGGTTGCGACAGTAGAATCAACAGCACGCAAGGGGACCAGGCCGAT-CCTAGCTTGCGCATTCT
131 AGGGTTGCGACAACAGAATCAACAGCACGCAAGGGGACCAGGCCAATCCCTAGCTTGCGCATTCT
* * * *
26760510 GCCTCTCCG-GCTGGCTGAGCGCACGTATGCTCATTTCATGGGTTGGCCTAGGCATACAGAG-TA
196 GCCTCTCCGATC-GGCTGAGCACACGCATGCCCATTTCATGGGTTGGCCTAGGCATACAGAGCT-
**
26760573 CATTCCACGTCTAAGCCCCAATTGGACCGAGGGTTATGGCAGCAGGACCGGTAGCGGGATCGATA
259 CATTCCACGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAGCAGGACCGGTAGCGGGATCGATA
26760638 GCATGTAGAGGGGGACTGGGTTGATCCTCAGCTTGCGCATTATA
324 GCATGTAGAGGGGGACTGGGTTGATCCTCAGCTTGCGCATTATA
* * ** *
26760682 CCTCTCCGGTC-GACCTCTCCAGTCGACTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGG
1 CCTCTCCGATCAG-CCTCTCCAGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * *
26760746 CATACAGAGTTCATCCCCAGTCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATTGGA-CTGAA
65 CATACAGAGTTCATCCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGAACCAG-A
* * * * * * *
26760809 CCGAGGGTTGCGGCAACAGGATCGACAGTACGCAGGGGGACCAGGCTAATCCCTGGCTTGCGCAT
128 CCGAGGGTTGCGACAACAGAATCAACAGCACGCAAGGGGACCAGGCCAATCCCTAGCTTGCGCAT
* * * * * * **
26760874 TCTTCCTCTTCGATCGGCTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGC
193 TCTGCCTCTCCGATCGGCTGAGCACACGCATGCCCATTTCATGGGTTGGCCTAGGCATACAGAGC
* *
26760939 TCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGC
258 TCATTCCACGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAGC
26760983 GAAACCGACA
Statistics
Matches: 257, Mismatches: 38, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
365 4 0.02
366 149 0.58
367 102 0.40
368 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (367 bp):
CCTCTCCGATCAGCCTCTCCAGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCG
AGGGTTGCGACAACAGAATCAACAGCACGCAAGGGGACCAGGCCAATCCCTAGCTTGCGCATTCT
GCCTCTCCGATCGGCTGAGCACACGCATGCCCATTTCATGGGTTGGCCTAGGCATACAGAGCTCA
TTCCACGTCTAAGCCCCAACCGGACCGAGGGTTATGGCAGCAGGACCGGTAGCGGGATCGATAGC
ATGTAGAGGGGGACTGGGTTGATCCTCAGCTTGCGCATTATA
Found at i:26761294 original size:26 final size:26
Alignment explanation
Indices: 26761246--26761297 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26761236 TGGCTTAGGC
* *
26761246 ATACAGAGTTCATTCCATGTCTAAGA
1 ATACAGAGCTCATTCCATATCTAAGA
26761272 ATACAGAGCTCATTCCCA-ATCTAAGA
1 ATACAGAGCTCATT-CCATATCTAAGA
26761298 TTTTAAGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (26 bp):
ATACAGAGCTCATTCCATATCTAAGA
Found at i:26762622 original size:12 final size:12
Alignment explanation
Indices: 26762607--26762637 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
26762597 CAAAGGTTGT
26762607 GGCAGCAGGATC
1 GGCAGCAGGATC
*
26762619 GGCAGCAGGATT
1 GGCAGCAGGATC
26762631 GGCAGCA
1 GGCAGCA
26762638 CGTAGAGGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.23, G:0.42, T:0.10
Consensus pattern (12 bp):
GGCAGCAGGATC
Found at i:26762771 original size:26 final size:26
Alignment explanation
Indices: 26762742--26762794 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26762732 GTTGATTTAG
*
26762742 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
26762768 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26762794 G
1 G
26762795 ATCAGACGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26763050 original size:182 final size:182
Alignment explanation
Indices: 26762731--26763078 Score: 423
Period size: 182 Copynumber: 1.9 Consensus size: 182
26762721 TCGTTTCGTG
* * *
26762731 GGTTGATTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGA
* * * ** *
26762796 TCAGACGAACCGAGGGTTGCAACAATAGGATCGACAGTACGCAGGGGAGACCAGGTTAATCCCTG
66 TCAGACGAACCAAGGGTTACAACAATAGGATCGACAGCACGCAGGGGAGACCAGCCTAATCCCCG
* * *
26762861 GCTTGCGCATCCTACCTCTCTGGTCGACTGAGCGCCCGTACATTGTTTCTTT
131 ACTTGCGCATCCTACCTCTCCGGTAGACTGAGCGCCCGTACATTGTTTCTTT
*
26762913 GGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCTC-GTCTAAGA
1 GGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGA
* * * ** * * * * *
26762977 TCGGACTGGATCAAGGGTTACGGCAGTAGGATCGATAGCATGCAGGGTG-GATC-GACCTGATCC
66 TCAGAC-GAACCAAGGGTTACAACAATAGGATCGACAGCACGCAGGG-GAGACCAG-CCTAATCC
* *
26763040 CCGACTTGCGCATTCTGCCTCTCCGGTAGACTGAGCGCC
128 CCGACTTGCGCATCCTACCTCTCCGGTAGACTGAGCGCC
26763079 TGCACGCTCA
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
181 14 0.10
182 123 0.89
183 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.25
Consensus pattern (182 bp):
GGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGA
TCAGACGAACCAAGGGTTACAACAATAGGATCGACAGCACGCAGGGGAGACCAGCCTAATCCCCG
ACTTGCGCATCCTACCTCTCCGGTAGACTGAGCGCCCGTACATTGTTTCTTT
Found at i:26763831 original size:26 final size:26
Alignment explanation
Indices: 26763791--26763843 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26763781 GTTGGCTTAG
* *
26763791 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGCTCATTCCCA-GTCTAA
26763817 GCATACGAAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
26763843 G
1 G
26763844 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:26765025 original size:26 final size:26
Alignment explanation
Indices: 26764989--26765040 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26764979 GTTGGCTTAG
*
26764989 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
26765015 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26765041 TATTTTAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26766118 original size:26 final size:26
Alignment explanation
Indices: 26766089--26766141 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26766079 GTTGACTTAC
*
26766089 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
26766115 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26766141 G
1 G
26766142 ATTGGACGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26767347 original size:26 final size:26
Alignment explanation
Indices: 26767311--26767363 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26767301 GTTGACTTAG
26767311 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26767337 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26767363 G
1 G
26767364 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26767702 original size:26 final size:26
Alignment explanation
Indices: 26767666--26767718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26767656 GTTGACTTAG
26767666 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26767692 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26767718 G
1 G
26767719 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26767892 original size:355 final size:343
Alignment explanation
Indices: 26767274--26768023 Score: 880
Period size: 355 Copynumber: 2.2 Consensus size: 343
26767264 CTCTGGTTGA
* * *
26767274 CTGAGCGCCCGCACGCTCCTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * *
26767339 ATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGACAGCAGGATCGATAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGACAGC
* * * * * *
26767404 ACATAAGGGGGATCGGATCGATCCCAGCCTTACGCATTCTGCTTCTCCGGTCGACTGAGCGCCCG
131 ACACAAGGGGGACCGGACCGATCCCAGCCTTACGCATTCTACCTCTCCGGCCGACTGAGCGCCCG
* *
26767469 CACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCATGTCTAAGCCCCAGTCAGAC
196 CACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTACAATCCATGTCTAAGCCCCAGCCAGAC
* * * * *
26767534 CGAGGGTTGTGTTAGCAAGACCGGCAGTGGGATCGGCAGCACGCAGAGGGGGACCAGGCTGATCC
261 CGAGGATTGTG---GC---A---GC---GGGACCGGCAGCACACAGAGGAGGACCAGGCCGAT-C
26767599 CCT-GCTTGCAAATTATGCCTCTTCGGCCGG
313 CCTGGCTTGCAAATTATGCCTCTTCGGCCGG
*
26767629 CTGAGCGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * * *
26767694 ATACGGAGTTGATTCCCAGTCTAAGATCGGA-CTGAGCCGAGGGTTGTGGCAGTAGGATCGACAG
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGA-CCGAGGGTTGCGACAGCAGGATCGACAG
* * * * * * * * * *
26767758 CACGC-AGAGTGGACCGTACCGTTCCCCGGCTTGCGCATTTTACCTCTCTGGCCGACTGAGTGCC
130 CACACAAG-GGGGACCGGACCGATCCCAGCCTTACGCATTCTACCTCTCCGGCCGACTGAGCGCC
* * * *
26767822 CGCACGC-CAATTTCATGGGTTGGCTTAGGTATAGGTAGCT-CAATCCATGTCTAAGCCCTAGCC
194 CGCACGCTC-ATTTCATGGGTTGGCTTAGGCATACGAAG-TACAATCCATGTCTAAGCCCCAGCC
*
26767885 GGACCGAGGATTGTGGCAGCGGGACCGGCAGCACACAGAGGAGGACCAGGCCGATCCCTGGCTTG
257 AGACCGAGGATTGTGGCAGCGGGACCGGCAGCACACAGAGGAGGACCAGGCCGATCCCTGGCTTG
*** *
26767950 TGCATTTTGCCTCTTCGGCCGG
322 CAAATTATGCCTCTTCGGCCGG
* * *
26767972 CTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCAT
1 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
26768024 TCCTTGTCTA
Statistics
Matches: 341, Mismatches: 49, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
342 4 0.01
343 102 0.30
346 2 0.01
349 1 0.00
352 2 0.01
354 6 0.02
355 223 0.65
356 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (343 bp):
CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGACAGC
ACACAAGGGGGACCGGACCGATCCCAGCCTTACGCATTCTACCTCTCCGGCCGACTGAGCGCCCG
CACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTACAATCCATGTCTAAGCCCCAGCCAGAC
CGAGGATTGTGGCAGCGGGACCGGCAGCACACAGAGGAGGACCAGGCCGATCCCTGGCTTGCAAA
TTATGCCTCTTCGGCCGG
Found at i:26768000 original size:159 final size:158
Alignment explanation
Indices: 26767782--26768194 Score: 433
Period size: 159 Copynumber: 2.6 Consensus size: 158
26767772 CGTACCGTTC
* * * *
26767782 CCCGGCTTGCGCATTTTACCTC-TCTGGCCGACTGAGTGCCCGCACGC-CAATTTCATGGGTTGG
1 CCCGGCTTGCGCATTTTGCCTCTTC-GGCCGGCTGAGTGCCCGCACGCTC-GTTTCGTGGGTTGG
* * * * **
26767845 CTTAGGTATA-GGTAGCTCAATCCATGTCTAAGCCCTAG-CCGGACCGAGGATTGTGGCAGCGGG
64 CTTAGGCATACGG-AGTTCATTCCATGTCTAAGCCC-AGACCGGACCGAGGATTGCGGCAGCAAG
*
26767908 ACCGGCAGCACAC-AGAGGAGGACCAGGCCGAT
127 ACCGACAGCACACTAG-GGAGGACCAGGCCGAT
* * * * *
26767940 CCCTGGCTTGTGCATTTTGCCTCTTCGGCCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGAC
1 CCC-GGCTTGCGCATTTTGCCTCTTCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGC
* * * ** * * *
26768005 TTATGCATATGGAGTTCATTCCTTGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAAGATC
65 TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCGGACCGAGGATTGCGGCAGCAAGACC
* * * *
26768070 GACAGTACACTAGGGGGGACCGGGTCGA-
130 GACAGCACACTAGGGAGGACCAGGCCGAT
* * * *
26768098 CTACGGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGTGCCTGCACGCTCGTTTCGTGGGTTGGC
1 C-CCGGCTTGCGCATTTTGCCTCTTCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGC
26768163 TTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 TTAGGCATACGGAGTTCATTCCATGTCTAAGC
26768195 ATATGGAGCT
Statistics
Matches: 208, Mismatches: 40, Indels: 14
0.79 0.15 0.05
Matches are distributed among these distances:
158 87 0.42
159 114 0.55
160 7 0.03
ACGTcount: A:0.17, C:0.28, G:0.30, T:0.25
Consensus pattern (158 bp):
CCCGGCTTGCGCATTTTGCCTCTTCGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCT
TAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCGGACCGAGGATTGCGGCAGCAAGACCG
ACAGCACACTAGGGAGGACCAGGCCGAT
Found at i:26775476 original size:355 final size:363
Alignment explanation
Indices: 26774806--26775523 Score: 956
Period size: 355 Copynumber: 2.0 Consensus size: 363
26774796 ACGCATCCTG
* * * ** *
26774806 CCTCTCTGGTCGACTGAGTGCCCGCACGCTTGTTTCGTGTGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGTGTTGACTTAGGCATACAGAGTTCAT
* * * * *
26774871 CCCTCATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAG
66 CCCTCAGCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATCAGATCAAGGGTTGCGACA-
* * * * *
26774936 TAGGATCAGCAGCACGCAGGAGGGATCGAACCGATCCTTGACTTGCGCATTCTACCTCTCCGGTC
130 -AGGA-CAGCAGCA--CAGAAGGGACCGAACCGATCCTCGACTTACGCATTCTACCGCTCCGGTC
* ** *
26775001 GGCTGAGCGCCCGGACGCTCATTTTATGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAA
191 GGCTGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAA
* * * *
26775066 GCCCCAGCTGGACCAAGGGTTGTGGTAGCAGGATCGGCAGCGTGATCGCCAGCACGCAGAGGGGG
256 GCCCCAGCTGGACCAAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGACAGCACGCAAAGGGGG
26775131 A-CTGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGGCCAA
321 ATC-GGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGGCCAA
*
26775174 CCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCTTG-GCTTGACTTAGGCATACAGAGTTCA
1 CCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGTG-TTGACTTAGGCATACAGAGTTCA
*
26775238 TCCC-CAGCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGAA-CTAGATCAAGGGTTGCGAC
65 TCCCTCAGCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATC-AGATCAAGGGTTGCGAC
* ** * * * *
26775301 -A-G-CA-C-GTA-AGAAGGG-CCGAGTCGATCCTCGGCTTACGCATTCTGCCGCTCTGGTCGGT
129 AAGGACAGCAGCACAGAAGGGACCGAACCGATCCTCGACTTACGCATTCTACCGCTCCGGTCGGC
26775359 TGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCC
194 TGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCC
* *
26775424 CCAG-TCGGACCAAGGTTTGTGGTAGCAGGACCGGCAGTGGGATCGACAGCACGCAAAGGGGGAT
259 CCAGCT-GGACCAAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGACAGCACGCAAAGGGGGAT
26775488 CGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCG
323 CGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCG
26775524 ATCGGCTGAG
Statistics
Matches: 311, Mismatches: 35, Indels: 21
0.85 0.10 0.06
Matches are distributed among these distances:
354 1 0.00
355 184 0.59
356 7 0.02
359 2 0.01
360 1 0.00
361 2 0.01
363 1 0.00
364 1 0.00
366 1 0.00
367 52 0.17
368 59 0.19
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (363 bp):
CCTCTCCGATCGACTGAGCGCCCGCACGCTCATTTCGTGTGTTGACTTAGGCATACAGAGTTCAT
CCCTCAGCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATCAGATCAAGGGTTGCGACAA
GGACAGCAGCACAGAAGGGACCGAACCGATCCTCGACTTACGCATTCTACCGCTCCGGTCGGCTG
AGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCC
AGCTGGACCAAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGACAGCACGCAAAGGGGGATCGG
GCTGATCCCCGACTTGCGCATTATGCCTCTCCGGCCAA
Found at i:26775768 original size:158 final size:158
Alignment explanation
Indices: 26775577--26775908 Score: 359
Period size: 158 Copynumber: 2.1 Consensus size: 158
26775567 CATAGCGTGC
** * * * *
26775577 TCATTCCATGTCTAAGCCCCA-ACCGGACAGAGGGTTGTGGTAG-AGGGA-CTGACAGCACGCAG
1 TCATTCCATGTCTAAG-ATCAGACCAGACTGAGGGTTGTGATAGCA-GGATC-GACAACACGCAG
* * * * *
26775639 AGGGGGATCGGGTCGATCCC-GACTTGCACATTATGCCTCTTCGGCCGGCTCAGCGCCCACATGC
63 -GGGGGACCGGGTCAATCCCTGACTTGCACATTATACCTCTCCGGCCGGCTCAGCGCCCACACGC
*
26775703 TCATTTCGTGGGTTGACTTCCGCATACGGAGT
127 TCATTTCGTGGGTTGACTTACGCATACGGAGT
*
26775735 TCATTCCCA-GTCTAAGATCAGACCAGACTGAGGGTTGTGATGGCAGGATCGACAACACGCAGGG
1 TCATT-CCATGTCTAAGATCAGACCAGACTGAGGGTTGTGATAGCAGGATCGACAACACGCAGGG
* * * * * * * *
26775799 GGGACCGGGTCAATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCGCCCGCACGCTCG
65 GGGACCGGGTCAATCCCTGACTTGCACATTATACCTCTCCGGCCGGCTCAGCGCCCACACGCTCA
* ** *
26775864 TTTCGTTGGTTGTGTTAGGCATACGGAGT
130 TTTCGTGGGTTGACTTACGCATACGGAGT
26775893 TCATTCCATGTCTAAG
1 TCATTCCATGTCTAAG
26775909 CATACGGAGC
Statistics
Matches: 143, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
157 22 0.15
158 116 0.81
159 5 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
TCATTCCATGTCTAAGATCAGACCAGACTGAGGGTTGTGATAGCAGGATCGACAACACGCAGGGG
GGACCGGGTCAATCCCTGACTTGCACATTATACCTCTCCGGCCGGCTCAGCGCCCACACGCTCAT
TTCGTGGGTTGACTTACGCATACGGAGT
Found at i:26775932 original size:26 final size:26
Alignment explanation
Indices: 26775882--26775934 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26775872 GTTGTGTTAG
* *
26775882 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
26775908 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
26775934 G
1 G
26775935 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:26778010 original size:26 final size:26
Alignment explanation
Indices: 26777960--26778012 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26777950 GTTAACTTAG
* *
26777960 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTGCATCCCTAATCTAA
26777986 GCATACGGAGTGCATACCC-AATCTAA
1 GCATACGGAGTGCAT-CCCTAATCTAA
26778012 G
1 G
26778013 ATCGGGCCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTGCATCCCTAATCTAA
Found at i:26778815 original size:368 final size:354
Alignment explanation
Indices: 26777923--26778933 Score: 1062
Period size: 355 Copynumber: 2.8 Consensus size: 354
26777913 CTTTGGTCGT
* * * * *
26777923 CTGAGCGCCCGCACGC-CTGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCTAGTCTAAG
1 CTGAGTGCCCGCACGCTC-ATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
* * * * * * * * *
26777987 CATACGGAGTGCATACCCAATCTAAGATCGGGCCGAATCGAGGGTTACGACAGCAAGATCGACAG
65 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGGCAG
* * * * * *
26778052 CATGTAAGAGGGACC-GAGCCGATCCCCGGCTTGTGTATTTTGCCTCTCCGATCGGCTGAGAGCC
130 CATGCAAGGGGGACCGGA-CCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* *
26778116 TGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTTAG
194 TGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAG-TGG
* * * * * *
26778181 ATCGAGGGTTGTGGTAGCGGGATCGGCGGCGGGCTCCACAGCACGTAAAAGGGGATCAGGTTGAT
258 ACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCCACAGCACGTAAAAGGGGATCAGGCTGAT
** * *
26778246 TTTCAGCTTGTGCATTGTGCCTTTCCGACCGG
323 CCTCAGCTTGTGCATTGTGCCTCTCCGACCGA
* ** * *
26778278 TTGAGTGCCCGCACGCTCATTTTATGGGTTGACTTAGGAATACTGAGTTCATCCCCAGTCTAAGC
1 CTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
* * * * *
26778343 ATACAGAATTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAACAGCTGGATCGGTAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGGCAGC
* * ** * * * *
26778408 ATGCAGGGGGGATCGGGTCGAT-CATCGGCTTGTGCATTCTGCCTCTCCGGTTGACTGAGCGCCT
131 ATGCAAGGGGGACCGGACCGATCCCT-GGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCT
* *
26778472 GCAAACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGCTGGA
195 GCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAG-TGGA
** * * * * *
26778537 CCGAATGTTGTGGTAGCAGGACCGGCAGCGGGATCGACAGTACG-CAGAGGGGAATCGGGCTGAT
259 CCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCCACAGCACGTAAAAGGGG-ATCAGGCTGAT
*
26778601 CC-CTGGCTTGTGCATTATGCCTCTCCGGCCAACCTCTCCGACCGA
323 CCTC-AGCTTGTGCA-T-TG----T---G----CCTCTCCGACCGA
*
26778646 CTGAGTGGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
1 CTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
* * * *
26778711 CTACGGAGTTCATTCCCAGTCTGAGATCAGACCGGATTGAGGGTTGCGGCAGCAGGATCGGCAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGGCAGC
* * ** * * *
26778776 ACGCAAGGGGGACCGGACCGATCCCTTGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCCG
131 ATGCAAGGGGGACCGGACCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCTG
* * * * *
26778841 CACTCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGTCGGA
196 CACACTCATTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCCAGT-GGA
* * *
26778905 CCGAGGGTTATGGCAGCCGGACCGGCAGC
259 CCGAGGGTTGTGGTAGCAGGACCGGCAGC
26778934 ACACAGAGGG
Statistics
Matches: 533, Mismatches: 102, Indels: 29
0.80 0.15 0.04
Matches are distributed among these distances:
354 8 0.02
355 264 0.50
356 3 0.01
357 2 0.00
361 1 0.00
364 1 0.00
367 1 0.00
368 250 0.47
369 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (354 bp):
CTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGGCAGC
ATGCAAGGGGGACCGGACCGATCCCTGGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCCTG
CACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTGGACC
GAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCCACAGCACGTAAAAGGGGATCAGGCTGATCCT
CAGCTTGTGCATTGTGCCTCTCCGACCGA
Found at i:26779093 original size:159 final size:159
Alignment explanation
Indices: 26778712--26779106 Score: 442
Period size: 159 Copynumber: 2.5 Consensus size: 159
26778702 AGTCTAAGCC
* * * *
26778712 TACGGAGTTCATTCCCAGTCTGAGATCAGACCGGATTGAGGGTTGCGGCAGCAGGATCGGCAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCAGAACGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCA
* * * *
26778777 CGCA-AGGGGGACCGGACCGATCCCTTGCTTACGCATTCTACCTCTCCGACCGGCTGAGCGCCCG
66 CGCAGAGGGGGACCAGACCGATCCCTGGCTTACGCATTATACCTCTCCGACCAGCTGAGCGCCCG
* * *
26778841 CACTCCCGTTTCGTGGGTTGGCTTAGGCA
131 CACACCCGTTTCATGGGTTGACTTAGGCA
* * ** * * * * *
26778870 TAGGGAGCTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTATGGCAGCCGGACCGGCAG
1 TACGGAGTTCATTCCCA-GTCTAAG-ATCAGAACGGACTGAGGGTTGTGGCAGCAGGATCGGCAG
* * * **
26778933 CACACAGAGGGGGACCAGACCGATACCC-GGCTTACGCATTATGCCTCTTCGACCAGCTTTGCGC
64 CACGCAGAGGGGGACCAGACCGAT-CCCTGGCTTACGCATTATACCTCTCCGACCAGCTGAGCGC
* *
26778997 CCGCACACTCGTTTCATGGGTTGACTTATGCA
128 CCGCACACCCGTTTCATGGGTTGACTTAGGCA
* * *
26779029 TACGGAGTTAATTCCCAGTCTAAGATCAGAACGGACTGAGGGTTGTGCCAGCAAGG-TCGACAGC
1 TACGGAGTTCATTCCCAGTCTAAGATCAGAACGGACTGAGGGTTGTGGCAGC-AGGATCGGCAGC
26779093 ACGCAG-GGGGGACC
65 ACGCAGAGGGGGACC
26779107 GGGTCGATCC
Statistics
Matches: 191, Mismatches: 39, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.02
158 59 0.31
159 121 0.63
160 8 0.04
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (159 bp):
TACGGAGTTCATTCCCAGTCTAAGATCAGAACGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCA
CGCAGAGGGGGACCAGACCGATCCCTGGCTTACGCATTATACCTCTCCGACCAGCTGAGCGCCCG
CACACCCGTTTCATGGGTTGACTTAGGCA
Found at i:26781002 original size:26 final size:26
Alignment explanation
Indices: 26780966--26781016 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
26780956 TTGACTTAGG
26780966 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACGGAGTTCATCCCCAGTCTAAA
*
26780992 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
26781017 GATCAGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAA
Found at i:26781371 original size:26 final size:26
Alignment explanation
Indices: 26781335--26781384 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26781325 GACTTAGGCA
26781335 TATGGAGTTCATCCCCAGTCTAAGCT
1 TATGGAGTTCATCCCCAGTCTAAGCT
* *
26781361 TATGGGGTTCATTCCCAGTCTAAG
1 TATGGAGTTCATCCCCAGTCTAAG
26781385 ATCGGATCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (26 bp):
TATGGAGTTCATCCCCAGTCTAAGCT
Found at i:26782945 original size:26 final size:26
Alignment explanation
Indices: 26782915--26782967 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26782905 GTTGACTTCG
26782915 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
26782941 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26782967 G
1 G
26782968 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26784026 original size:26 final size:26
Alignment explanation
Indices: 26783997--26784049 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26783987 GTTGACTTAG
26783997 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
26784023 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26784049 G
1 G
26784050 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26785265 original size:26 final size:26
Alignment explanation
Indices: 26785225--26785277 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26785215 GTTGACTTAG
*
26785225 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
*
26785251 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
26785277 G
1 G
26785278 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:26785609 original size:26 final size:26
Alignment explanation
Indices: 26785580--26785632 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
26785570 GTTGACTTAG
26785580 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26785606 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26785632 G
1 G
26785633 ATCGAACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26786837 original size:26 final size:26
Alignment explanation
Indices: 26786801--26786852 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26786791 GTTGACTTAG
26786801 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
26786827 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
26786853 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:26787273 original size:25 final size:26
Alignment explanation
Indices: 26787238--26787289 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
26787228 GTTGACTTAG
*
26787238 GCATACAGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
*
26787263 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
26787289 G
1 G
26787290 ATCGAAATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:26787760 original size:157 final size:156
Alignment explanation
Indices: 26787263--26787760 Score: 468
Period size: 158 Copynumber: 3.2 Consensus size: 156
26787253 CCCAGTCTAA
*
26787263 GCATACGGAGTTCATTCACA-GTCTAAGATCGAAAT-AGACCGAGGGTTGTGGCAGTAGGATCGA
1 GCATACGGAGTTCATTC-CATGTCTAAGATCG--ATCAGACCGAGGGTTGTGGCAGCAGGATCGA
* * ** * *
26787326 CAGCATGCAGGGGGGACCGGGCCGATCCCCGACTTGCGCATTTTAACTCTCCGACCGACTGAGCA
63 CAGCATGCAGGGGGGACC-GGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCTACTGAGCA
* * *
26787391 CCTGTACGCCCGTTTCGTGGGTTGGCTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * ** * * * * **
26787421 GCATAGGGAGCTCATTACATGACCAAGCCCCAGCCAGATCGAGGGTTGTGGCAGCGGGA-CTGGT
1 GCATACGGAGTTCATTCCATGTCTAAGATCGA-TCAGACCGAGGGTTGTGGCAGCAGGATC-GAC
* * * * * * *
26787485 AGCACGCAGAGGGGGATCGACCGATCCCTGGCTTGCGCATTATGCCTCT-TCG-GCTGGCTCAGC
64 AGCATGCAG-GGGGGACCGGCCGATCCCCGGCTTGCGCATTATGCCTCTCT-GACCT-ACTGAGC
* * *
26787548 ACCCGCACGCTCGTTTCATGGGTTGACTTAT
126 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * **
26787579 GTATACAGAGTTCATTCC-TAGTCTAAGATCGATCGGACCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGATCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * *
26787643 ACATGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCTACTGAGCGCC
65 GCATGCAGGGGGGACC-GGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCTACTGAGCACC
*
26787708 CGCACGCTTGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
26787736 GCATACGGAGTTCATTCCATGTCTA
1 GCATACGGAGTTCATTCCATGTCTA
26787761 GGCATATGGA
Statistics
Matches: 259, Mismatches: 68, Indels: 27
0.73 0.19 0.08
Matches are distributed among these distances:
156 8 0.03
157 113 0.44
158 131 0.51
159 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGATCAGACCGAGGGTTGTGGCAGCAGGATCGACAG
CATGCAGGGGGGACCGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCTACTGAGCACCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:26788484 original size:26 final size:26
Alignment explanation
Indices: 26788455--26788508 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
26788445 TGGGTTGACT
* *
26788455 TAGGCATACGGAGTTTA-TCCCAAGTC
1 TAGGCATACAGAGTTCATTCCC-AGTC
26788481 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
26788507 TA
1 TA
26788509 AGATCAGACC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:26788871 original size:171 final size:170
Alignment explanation
Indices: 26788541--26788850 Score: 401
Period size: 171 Copynumber: 1.8 Consensus size: 170
26788531 ACGGCAGCAA
* * *
26788541 GATCGGTAGCATGCAGGGGGGACCTGGCAGATCCCCAACTGGCGCATTCTGCCTCTCCGACCGGC
1 GATCGATAGCATGCAGGAGGGACCGGGCAGATCCCCAACTGGCGCATTCTGCCTCTCCGACCGGC
* * *
26788606 TGAGCACCTGCACACTCGTTTCGTGGGTTGTCTTAGGCATACGGAGTACATTCCATGTCTAAGCC
66 TGAGCACCTGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTACATTCCATGTCTAAGAC
* *
26788671 CCAGCCGAACCGAGGACTGTGGCAGCAGGACCAGCAGCGG
131 CCAACCGAACCGAGGACTATGGCAGCAGGACCAGCAGCGG
* * ** *
26788711 GATCGATAGCATGCAGAGATGGACCGGGCTGATCCCCGGCTTGCGCA-TCATGCCTCTCCGACCG
1 GATCGATAGCATGCAG-GAGGGACCGGGCAGATCCCCAACTGGCGCATTC-TGCCTCTCCGACCG
** *
26788775 GCTGAGCA-CTCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTA
64 GCTGAGCACCT-GCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTACATT-CCATGTCTA
* *
26788838 AGATCGAACCGAA
127 AGACCCAACCGAA
26788851 TCGAAGGTTA
Statistics
Matches: 119, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
170 19 0.16
171 97 0.82
172 3 0.03
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.21
Consensus pattern (170 bp):
GATCGATAGCATGCAGGAGGGACCGGGCAGATCCCCAACTGGCGCATTCTGCCTCTCCGACCGGC
TGAGCACCTGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTACATTCCATGTCTAAGAC
CCAACCGAACCGAGGACTATGGCAGCAGGACCAGCAGCGG
Found at i:26789029 original size:158 final size:158
Alignment explanation
Indices: 26788741--26789029 Score: 334
Period size: 158 Copynumber: 1.8 Consensus size: 158
26788731 GGACCGGGCT
* * * *
26788741 GATCCCCGGCTTGCGCATCATGCCTCTCCGACCGGCTGAGCACTCGCATGCTCGTTTCATGGGTT
1 GATCCCCGGCTTGCGCATCATACCTCTCCGACCGGCTGAGCACTCGCACGCTCATTTCATAGGTT
* * *
26788806 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCGAAGGTTATGGTAGCAGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCGAACCGAACCGAAGGTTATGGCAGCAGG
26788871 ATCGGTAGCATGCAGGGGGGATCGGATC
131 ATCGGTAGCATGCAGGGGGGATCGGATC
* * * **
26788899 GATCCTCGGCTTGCGCATTC-TACCTCTCCGATCGGCTGAGCGC-CTGCACGCTCATTTTGTAGG
1 GATCCCCGGCTTGCGCA-TCATACCTCTCCGACCGGCTGAGCACTC-GCACGCTCATTTCATAGG
* * * ** * * *
26788962 TTGGCTTAGGCATACGGAGTAT-ATT-CCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGCAG
64 TTGACTTAGGCATACGGAGT-TCATTCCCA-GTCTAAGACCGAACCGAACCGAAGGTTATGGCAG
26789025 CAGGA
127 CAGGA
26789030 CCGACAGTGG
Statistics
Matches: 107, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.04
158 100 0.93
159 3 0.03
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
GATCCCCGGCTTGCGCATCATACCTCTCCGACCGGCTGAGCACTCGCACGCTCATTTCATAGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCGAACCGAACCGAAGGTTATGGCAGCAGG
ATCGGTAGCATGCAGGGGGGATCGGATC
Found at i:26789095 original size:329 final size:329
Alignment explanation
Indices: 26788481--26789099 Score: 838
Period size: 329 Copynumber: 1.9 Consensus size: 329
26788471 ATCCCAAGTC
*
26788481 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAAGATCG
1 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACGGCAGCAAGATCG
*
26788546 GTAGCATGCAGGGGGGACCTGGCAGATCCCCAACTGGCGCATTCTGCCTCTCCGACCGGCTGAGC
66 GTAGCATGCAGGGGGGACCTGGCAGATCCCCAACTGGCGCATTCTACCTCTCCGACCGGCTGAGC
* * *
26788611 ACCTGCACACTCGTTTCGTGGGTTGTCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGC
131 ACCTGCACACTCATTTCGTAGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGC
* * *
26788676 CGAACCGAGGACTGTGGCAGCAGGACCAGCAGCGGGATCGATAGCATGCAGAGATGGACCGGGCT
196 CGAACCGAGGACTGTGGCAGCAGGACCAGCAGCGGGATCGACAGCACGCAGAGAGGGACCGGGCT
26788741 GATCCCCGGCTTGCGCATCATGCCTCTCCGACCGGCTGAGCACTCGCATGCTCGTTTCATGGGTT
261 GATCCCCGGCTTGCGCATCATGCCTCTCCGACCGGCTGAGCACTCGCATGCTCGTTTCATGGGTT
26788806 GACT
326 GACT
* * * * *
26788810 TAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGAATCGAA-GGTTATGGTAGCAGGAT
1 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCGAA-CCAAGGGTTACGGCAGCAAGAT
* * ** * *
26788873 CGGTAGCATGCAGGGGGGATC-GG-ATCGATCCTCGGCTTGCGCATTCTACCTCTCCGATCGGCT
64 CGGTAGCATGCAGGGGGGACCTGGCA--GATCCCCAACTGGCGCATTCTACCTCTCCGACCGGCT
* * * *
26788936 GAGCGCCTGCACGCTCATTTTGTAGGTTGGCTTAGGCATACGGAGTATATTCCATGTCTAAGCCC
127 GAGCACCTGCACACTCATTTCGTAGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCC
* * * ** * *
26789001 TAGTCGGACCGAGGGTTGTGGCAGCAGGACC-GACAGTGGGATCGACAGGACGCAGA-AGGGGAC
192 CAGCCGAACCGAGGACTGTGGCAGCAGGACCAG-CAGCGGGATCGACAGCACGCAGAGA-GGGAC
* *
26789064 CGGGCTGAT-CCCGGACTTGCGTATTATGCCTCTCCG
255 CGGGCTGATCCCCGG-CTTGCGCATCATGCCTCTCCG
26789100 GTCGGTCTCT
Statistics
Matches: 251, Mismatches: 32, Indels: 14
0.85 0.11 0.05
Matches are distributed among these distances:
327 1 0.00
328 10 0.04
329 237 0.94
330 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.21
Consensus pattern (329 bp):
TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTACGGCAGCAAGATCG
GTAGCATGCAGGGGGGACCTGGCAGATCCCCAACTGGCGCATTCTACCTCTCCGACCGGCTGAGC
ACCTGCACACTCATTTCGTAGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGC
CGAACCGAGGACTGTGGCAGCAGGACCAGCAGCGGGATCGACAGCACGCAGAGAGGGACCGGGCT
GATCCCCGGCTTGCGCATCATGCCTCTCCGACCGGCTGAGCACTCGCATGCTCGTTTCATGGGTT
GACT
Found at i:26789184 original size:26 final size:26
Alignment explanation
Indices: 26789155--26789207 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26789145 GTTGACTTAG
26789155 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
** * *
26789181 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
26789207 G
1 G
26789208 ATTGAAATGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:26790348 original size:16 final size:16
Alignment explanation
Indices: 26790327--26790358 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
26790317 GCGCATCCTG
26790327 CCTCTCTGGTCGGCTA
1 CCTCTCTGGTCGGCTA
26790343 CCTCTCTGGTCGGCTA
1 CCTCTCTGGTCGGCTA
26790359 AGCGCCCGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.38, G:0.25, T:0.31
Consensus pattern (16 bp):
CCTCTCTGGTCGGCTA
Found at i:26791823 original size:26 final size:26
Alignment explanation
Indices: 26791786--26791838 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26791776 GTTGACTTAG
*
26791786 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
26791812 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26791838 G
1 G
26791839 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26793335 original size:160 final size:159
Alignment explanation
Indices: 26793131--26793489 Score: 377
Period size: 160 Copynumber: 2.3 Consensus size: 159
26793121 CGTACGTCCG
* * *
26793131 TTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATT-CCATGTCTAAGCCCCA-ACCAGACCGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAG-ACCAGACCAGACCGAGGG
* * * * * *
26793194 TTGTGGCAACAGGATTGGCAGCAGGCAGAGAGGGACCGAGTCGATCCTCGGCTTGCGAATTATGC
65 TTATGGCAACAGGATCGACAGCACGCAG-GAGGGACCGAGTCGATCCCCGACTTGCGAATTATG-
* *
26793259 CTCTTCAAGCCGGCTCAA-CGCCCGCACGCTCA
128 CTCCTCAAGCC-GATCAACCGCCCGCACGCTCA
* * * * * * *
26793291 TTTCGTGGGTTGACTTATGTATACGAAGTTCATTCCCA-GTCTAAGATCAGAGCAGACTGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCAGACCAGACCGAGGGT
* ** * * * * *
26793355 TATGGTAGTAGGATCGACAGCACGTAGGAGGGATCGGGTCGATCCCCGACTTGCGCATTTTGCTC
66 TATGGCAACAGGATCGACAGCACGCAGGAGGGACCGAGTCGATCCCCGACTTGCGAATTATGCTC
* * * *
26793420 CTCCAGTCGATTAACCGCCCGCACGCTCG
131 CTCAAGCCGATCAACCGCCCGCACGCTCA
26793449 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTC
26793490 AAAGCATACG
Statistics
Matches: 161, Mismatches: 34, Indels: 10
0.79 0.17 0.05
Matches are distributed among these distances:
157 7 0.04
158 54 0.34
159 31 0.19
160 66 0.41
161 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGACCAGACCAGACCGAGGGT
TATGGCAACAGGATCGACAGCACGCAGGAGGGACCGAGTCGATCCCCGACTTGCGAATTATGCTC
CTCAAGCCGATCAACCGCCCGCACGCTCA
Found at i:26793473 original size:158 final size:156
Alignment explanation
Indices: 26792995--26793484 Score: 443
Period size: 158 Copynumber: 3.1 Consensus size: 156
26792985 GTCTAAGCAA
** * * **
26792995 ACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTACGGCAGTAGGATCGTTTAGCA
1 ACGGAGTTCATTCCCAGTCTAAGATCAGAC-AGACTGAGGGTTATGGCAGTAGGATCG-ACAGCA
* * * * *
26793060 CGCAGG-GGGATCGGGTCGATCCCCGACTTGCACATTCTGC-CTCTCC-GATCGGCTGAGCGCCC
64 CGCAGGAGGGATCGGGTCGATCCCCGACTTGCGCATTATGCTC-CTCCAG-TC-GATTAACGCCC
*
26793122 GTACG-TCCGTTTCGTGGGTTGGCTTAGGCAT
126 GCACGCT-CGTTTCGTGGGTTGGCTTAGGCAT
* * ** * * ** * *
26793153 AGGGAGCTCATT-CCATGTCTAAGCCCCA-ACCAGACCGAGGGTTGTGGCAACAGGATTGGCAGC
1 ACGGAGTTCATTCCCA-GTCTAAG-ATCAGA-CAGACTGAGGGTTATGGCAGTAGGATCGACAGC
* * * * * * * * * * *
26793216 AGGCAGAGAGGGACCGAGTCGATCCTCGGCTTGCGAATTATGCCTCTTCAAGCCGGCTCAACGCC
63 ACGCAG-GAGGGATCGGGTCGATCCCCGACTTGCGCATTATG-CTCCTCCAGTC-GATTAACGCC
* * * *
26793281 CGCACGCTCATTTCGTGGGTTGACTTATGTAT
125 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* *
26793313 ACGAAGTTCATTCCCAGTCTAAGATCAGAGCAGACTGAGGGTTATGGTAGTAGGATCGACAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACTGAGGGTTATGGCAGTAGGATCGACAGCAC
* *
26793378 GTAGGAGGGATCGGGTCGATCCCCGACTTGCGCATTTTGCTCCTCCAGTCGATTAACCGCCCGCA
65 GCAGGAGGGATCGGGTCGATCCCCGACTTGCGCATTATGCTCCTCCAGTCGATTAA-CGCCCGCA
26793443 CGCTCGTTTCGTGGGTTGGCTTAGGCAT
129 CGCTCGTTTCGTGGGTTGGCTTAGGCAT
26793471 ACGGAGTTCATTCC
1 ACGGAGTTCATTCC
26793485 ATGTCAAAGC
Statistics
Matches: 256, Mismatches: 64, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
157 15 0.06
158 92 0.36
159 58 0.23
160 85 0.33
161 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
ACGGAGTTCATTCCCAGTCTAAGATCAGACAGACTGAGGGTTATGGCAGTAGGATCGACAGCACG
CAGGAGGGATCGGGTCGATCCCCGACTTGCGCATTATGCTCCTCCAGTCGATTAACGCCCGCACG
CTCGTTTCGTGGGTTGGCTTAGGCAT
Found at i:26793825 original size:26 final size:26
Alignment explanation
Indices: 26793796--26793848 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26793786 GTTGACTTAG
* *
26793796 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
26793822 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
26793848 G
1 G
26793849 ATTAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:26794187 original size:26 final size:26
Alignment explanation
Indices: 26794151--26794203 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26794141 GTTGACTTAG
26794151 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26794177 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26794203 G
1 G
26794204 TTTGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26794424 original size:354 final size:348
Alignment explanation
Indices: 26793765--26794886 Score: 1221
Period size: 354 Copynumber: 3.2 Consensus size: 348
26793755 TCGGTTGAGT
* * * *
26793765 GCCCGTACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCATTCTAAGCATACGA
1 GCCCGCACATTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* * * * *
26793830 AGTTCATTCCCAATCTAAGATT-AGATCGAATCGAGGGTTGCGATC-GTAGGATCGGTAGCACGC
66 AGTTCATTCCCAGTCTAAGATTGA-ACCGGATCAAGGGTTGCGA-CAGCAGGATCGGTAGCACGC
* * * * *
26793893 AGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCAACTGAGTGCCTGCACG
129 A-GGGGGACCGGCT-GATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACG
* *
26793958 TTCGTTTCATGGGTTAGCTTAGGCATACGGAGTGCATTCCACGTCTAAGCCCCAGTCAGACCGAG
192 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGT-CATTCCACGTCTAAGCCCCAGTCAGACCGAG
* ** *
26794023 GGTTGTGGCAGCAGGACCGGCAGCGGGATCGATAGCACGTAGAGGGGGACCGGGTTGATCCTTGG
256 GGTTGTGGC-G-AGGACCGACAGCGGGATCGGCAGCA-G-AGAGGGGGACCGGGTTGATCCTCGG
* *
26794088 CTTGTGCATTATGCCTCTTCGACCAGCTGAGC
317 CTTGCGCATTATGCCTCTTCGACCAGCTCAGC
26794120 GCCCGCACATTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
1 GCCCGCACATTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* * * *
26794185 AGTTCATTCCCAGTCTAAGTTTGAACCGGATCAAGGGTTGCGGCAGCAGGATCGATAGCACGTAG
66 AGTTCATTCCCAGTCTAAGATTGAACCGGATCAAGGGTTGCGACAGCAGGATCGGTAGCACGCAG
*
26794250 GGGGACCAAGCTGATCCCC-AGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCT
131 GGGGACC-GGCTGATCCCCGA-CTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCT
* * *
26794314 CG-TTCTAAGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGGCCCAG-CTAGACCGAG
194 CGTTTC-ATGGGTTGGCTTAGGCATACGGAGT-CATTCCACGTCTAAGCCCCAGTC-AGACCGAG
* * *
26794377 GGTTATGGCTGTAGGACCGACAGCGGGATCGGCAGCATGCAGAGGGGGACCGGGCTGATCCTCGA
256 GGTTGTGGC-G-AGGACCGACAGCGGGATCGGCAGCA-G-AGAGGGGGACCGGGTTGATCCTCGG
* * * **
26794442 CTTACGCATTATGCCTCTTCGGCCGACCTCTCC
317 CTTGCGCATTATGCCTCTTCGACC-AGCTCAGC
* * * *
26794475 GGCCGGCTAAGCATTCGTACGCTCATTTCATGGGTTCACTTAGGCATACGGAGTTTATCCCCAGT
1 -GCCCGC--A-CA-T--T-CG----TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
* * * * * *
26794540 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGACAGCAAGATC
54 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGATCAAGGGTTGCGACAGCAGGATC
* * * * *
26794605 GGCAGCACGCAGGAGGGATCGGGCTAATCCCCGACTTGGGCATTCTGCCTCTCCGTCCGACTGAG
119 GGTAGCACGCAGG-GGGA-CCGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAG
* * * *
26794670 CGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAA
182 CGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG-TCATTCCACGTCTAAGCCCCAG
* * **
26794735 TCGGACCGAGGGTTGTGGC-AGCGA--GAC--C--GA-CAGCA-CAGAGAGGGGGACCGAATTGA
246 TCAGACCGAGGGTTGTGGCGAG-GACCGACAGCGGGATCGGCAGCAGAGAGGGGGACCGGGTTGA
26794791 TCCTCGGCTTGCGCATTATGCCTCTTCGACCAGCTCAGC
310 TCCTCGGCTTGCGCATTATGCCTCTTCGACCAGCTCAGC
* *** * *
26794830 ACCCGCATGCTCGTTTCGTGGGTTGACTTATG-ATACGGAGTTCATTCCCAGTCTAAG
1 GCCCGCACATTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
26794887 ATCAGATCAG
Statistics
Matches: 649, Mismatches: 92, Indels: 65
0.81 0.11 0.08
Matches are distributed among these distances:
342 23 0.04
343 16 0.02
347 2 0.00
348 1 0.00
352 1 0.00
353 5 0.01
354 185 0.29
355 123 0.19
356 49 0.08
357 1 0.00
358 3 0.00
359 6 0.01
360 3 0.00
362 2 0.00
363 2 0.00
364 3 0.00
365 2 0.00
366 2 0.00
367 104 0.16
368 109 0.17
369 7 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (348 bp):
GCCCGCACATTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATTGAACCGGATCAAGGGTTGCGACAGCAGGATCGGTAGCACGCAG
GGGGACCGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCG
TTTCATGGGTTGGCTTAGGCATACGGAGTCATTCCACGTCTAAGCCCCAGTCAGACCGAGGGTTG
TGGCGAGGACCGACAGCGGGATCGGCAGCAGAGAGGGGGACCGGGTTGATCCTCGGCTTGCGCAT
TATGCCTCTTCGACCAGCTCAGC
Found at i:26794547 original size:26 final size:26
Alignment explanation
Indices: 26794518--26794570 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26794508 GTTCACTTAG
*
26794518 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26794544 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26794570 G
1 G
26794571 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26794992 original size:157 final size:158
Alignment explanation
Indices: 26794544--26795002 Score: 428
Period size: 158 Copynumber: 2.9 Consensus size: 158
26794534 CCCAGTCTAA
* * * * * * * *
26794544 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTAC-GACAGCAAGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT-CTGGCAACAGGATCGAC
* * * * * *
26794608 AGCACGCAGGAGGGATCGGG-CTAATCCCCGACTTGGGCATTCTGCCTCTCCGTCCGACTGAGCG
65 AGCACGCAGGGGGGATCGGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* *
26794672 CCCGTACGCTCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGACTTAG
* * ** * * *
26794702 GCATAGGGAGCTCATT-CCATGTCTAAGCCCCA-ATCGGACCGAGGGTTGTGGCAGC-GAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTCTGGCAACAG-GATCG
* ** * * * * * *
26794764 ACAGCACAG-AGAGGGGGACCGAATTGATCCTCGGCTTGCGCATTATGCCTCTTCGACCAGCTCA
63 ACAGCAC-GCAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGA
* * * *
26794828 GCACCCGCATGCTCGTTTCGTGGGTTGACTTAT
126 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * *
26794861 G-ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGAGTTCTGGCAATAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTCTGGCAACAGGATCGACA
* *
26794925 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCC
66 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
26794990 CGCACGCTCGTTT
131 CGCACGCTCGTTT
26795003 TGTCTTACGG
Statistics
Matches: 233, Mismatches: 57, Indels: 23
0.74 0.18 0.07
Matches are distributed among these distances:
157 63 0.27
158 100 0.43
159 70 0.30
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTCTGGCAACAGGATCGACA
GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:26795405 original size:25 final size:26
Alignment explanation
Indices: 26795358--26795409 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
26795348 GTTGACTTAG
*
26795358 GCATACGGAGTTCATCACTAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
26795384 GCATAC-GAGTTCATTC-CCAGTCTAA
1 GCATACGGAGTTCA-TCACCAGTCTAA
26795409 G
1 G
26795410 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:26795566 original size:352 final size:353
Alignment explanation
Indices: 26795022--26795961 Score: 1000
Period size: 352 Copynumber: 2.6 Consensus size: 353
26795012 GAATTGATCC
* *
26795022 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGATTGGATCGGATCGAGGGTTGCGGCAGTA
1 CCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGTGGCAGTA
* ** *
26795087 GGATCAGTAGCAAGTAAGGGGACC-GGATGGATCCCCGACTTGCGCATTCTGCCTCTTTGGCGGT
65 GGATCAGTAGCAA-TGA-GGGACCGGGAT-GAT-CCCGACTTGCGCATTCTGCCTCTCCGGCGGC
* * * * *
26795151 TGAATGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTACACGTCTAAGCC
126 TGAGTGCTCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCC
* *
26795216 CCAGTCGGATCGAGGGTTATGGCAGCAAGACC-GATAGCGGGATCGACAACACGTAGAGGGGGAT
191 CCAGTCGGATCGAGGGTTATGGCAGCAAGACCAG-CAGCGGGATCGACAACACGCAGAGGGGGA-
26795280 CAG-GATGATCCCTAG-CTTACGCATTA-T-G-C-CTCTCCGGTCGGCTGAGCGCCCGCACGCTC
254 CAGAGATGATCCC-AGACTTACGCATTATTCGACGCTCTCCGGTCGGCTGAGCGCCCGCACGCTC
**
26795339 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCA
318 GTTTCATGGGTTGACTTAGGCATACAAAGTTCATCA
* *
26795375 CTAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGTAG
1 CCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGTGGCAGTAG
* * * * * *
26795440 GATCAGTAGCACATGAGAGACCGGGCTAATCCCTGACTTGCACATTCTACCTCTCCGGTTGGCTG
66 GATCAGTAGCA-ATGAGGGACCGGGATGATCCC-GACTTGCGCATTCTGCCTCTCCGG-CGGCTG
* * * *
26795505 AGCGCTCGCATGCTTGTTTCATGGGTTAGCTTAGGGATACGGAGTACATTCCACATCTAAGCCCC
128 AGTGCTCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCC
* * * * * * * * * * *
26795570 AGCCAGACCGAGGGTTATGGTAGCACGATCAGCAGCGGGATTGGCAGCATGCAGAGGGGGACCGA
193 AGTCGGATCGAGGGTTATGGCAGCAAGACCAGCAGCGGGATCGACAACACGCAGAGGGGGACAGA
* *
26795635 GTTGATCCCCGACTTACGCATTATGCCTTTCCGACTGGGCTCTCCGGTCGGCTGAGCGCCCGCAC
258 GATGATCCCAGACTTACGCATTA-----TT-CGAC---GCTCTCCGGTCGGCTGAGCGCCCGCAC
* * *
26795700 GGTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATCC
314 GCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCA
* * * * *
26795740 CCAGTCTAAACATATAGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTGTGGCAGCA
1 CCAGTCTAAGCATA-CGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGTGGCAGTA
* * * * * * * *
26795805 AGATTGACAGCACGCAA-GGGGGATCGGGTTGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCA
65 GGA-T--CAGTA-GCAATGAGGGACCGGGATGATCCCGA-CTTGCGCATTCTGCCTCTCCGG-CG
* * * ** *
26795869 GCTGAGTGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATTTCCAA
124 GCTGAGTGCTCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCACATCTAA
26795933 GCCCCAGTCGGATCGAGGGTTATGGCAGC
188 GCCCCAGTCGGATCGAGGGTTATGGCAGC
26795962 GGGACCGGTA
Statistics
Matches: 482, Mismatches: 78, Indels: 39
0.80 0.13 0.07
Matches are distributed among these distances:
350 3 0.01
351 30 0.06
352 189 0.39
353 16 0.03
358 1 0.00
360 1 0.00
361 1 0.00
365 73 0.15
366 47 0.10
367 2 0.00
368 110 0.23
369 6 0.01
370 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (353 bp):
CCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGTGGCAGTAG
GATCAGTAGCAATGAGGGACCGGGATGATCCCGACTTGCGCATTCTGCCTCTCCGGCGGCTGAGT
GCTCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGT
CGGATCGAGGGTTATGGCAGCAAGACCAGCAGCGGGATCGACAACACGCAGAGGGGGACAGAGAT
GATCCCAGACTTACGCATTATTCGACGCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCATG
GGTTGACTTAGGCATACAAAGTTCATCA
Found at i:26796982 original size:26 final size:26
Alignment explanation
Indices: 26796953--26797031 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
26796943 GTTGACTTAG
26796953 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
26796979 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
26797005 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26797031 G
1 G
26797032 ATCGGACCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26797798 original size:158 final size:158
Alignment explanation
Indices: 26797309--26797847 Score: 507
Period size: 158 Copynumber: 3.4 Consensus size: 158
26797299 CTCTGGCTGA
*
26797309 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATATGAAGTTCATTCCCA-GTCTAAG
1 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATT-CCATGTCTAAG
* * * *
26797373 ATCGGACCGGACTTAA-GGTTG-CGACAGCAAGATCGACAGCACGTAGGGCGGACCGAGCCGATC
65 ATCGGACCGGAC-TAAGGGTTGTCG-CAGCAGGATCGACAGCACGTAGGGGGGACCGGGTCGATC
* * * * * *
26797436 GCCAACTTACACATTCTACCTCTTCGACAGG
128 CCCGACTTGCGCATTCTGCCTCTTCGACCGG
* * * * * *
26797467 CTGAGCGCCCGCACG-TCCATTTCATGGGTTGACTTAGGCATAGGGAGCTCATTCCATGTCTAAG
1 CTGAGCACCCGCACGCT-CGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCATGTCTAAG
* ** * * ** * * *
26797531 -CCCCAGCCGGACTAAGGGCTGTGGCAGTGGGACCGACAGCACGCAGAAGGGGACCGGGTCGATC
65 ATCGGA-CCGGACTAAGGGTTGTCGCAGCAGGATCGACAGCACGTAG-GGGGGACCGGGTCGATC
* * *
26797595 CCCGGCTTGCGCATTATGCCTCTTCGATCGG
128 CCCGACTTGCGCATTCTGCCTCTTCGACCGG
* * * * * * *
26797626 CTCAACTCCTGCACGCTCTTTTCGTGGGTTGACTTATGCATATGAAGTTTATTCC-TAGTCTAAG
1 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCAT-GTCTAAG
* ** * * * * *
26797690 ATCGGACCAGACCGAGGGTTGTTGTAGCAGGATCAATAGCACATAGGGGGGACCGGGTCGATCCC
65 ATCGGACCGGACTAAGGGTTGTCGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGTCGATCCC
* *
26797755 CGACTTGTGCATTCTGCCTC-TCTGGCCGG
130 CGACTTGCGCATTCTGCCTCTTC-GACCGG
* * *
26797784 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCATGTCTAAG
26797848 CAGACGGAGC
Statistics
Matches: 297, Mismatches: 73, Indels: 22
0.76 0.19 0.06
Matches are distributed among these distances:
157 11 0.04
158 170 0.57
159 113 0.38
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (158 bp):
CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCATGTCTAAGA
TCGGACCGGACTAAGGGTTGTCGCAGCAGGATCGACAGCACGTAGGGGGGACCGGGTCGATCCCC
GACTTGCGCATTCTGCCTCTTCGACCGG
Found at i:26798578 original size:26 final size:26
Alignment explanation
Indices: 26798542--26798620 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
26798532 GTTGACTTAG
*
26798542 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
26798568 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
26798594 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
26798620 G
1 G
26798621 GAGGATCGGC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:26798945 original size:26 final size:25
Alignment explanation
Indices: 26798909--26798989 Score: 126
Period size: 26 Copynumber: 3.1 Consensus size: 25
26798899 GTTGACTTAG
*
26798909 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATATGGAGTTCATCCC-AGTCTAA
26798935 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCAT-CCCAGTCTAA
26798961 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCA-TCCCAGTCTAA
26798987 GCA
1 GCA
26798990 GGATCGACAG
Statistics
Matches: 52, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
26 48 0.92
27 4 0.08
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (25 bp):
GCATATGGAGTTCATCCCAGTCTAA
Found at i:26799305 original size:26 final size:26
Alignment explanation
Indices: 26799275--26799327 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26799265 GTTGACTTAG
*
26799275 GCATGCGGAGTTCATCCCCAGTCTAA
1 GCATGCAGAGTTCATCCCCAGTCTAA
* *
26799301 GCATGCAGAGTTCATTCTCAGTCTAA
1 GCATGCAGAGTTCATCCCCAGTCTAA
26799327 G
1 G
26799328 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATGCAGAGTTCATCCCCAGTCTAA
Found at i:26799680 original size:26 final size:26
Alignment explanation
Indices: 26799643--26799694 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
26799633 GTTGACTTAG
*
26799643 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
26799669 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26799695 CATCGGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26799714 original size:368 final size:362
Alignment explanation
Indices: 26798529--26799879 Score: 1292
Period size: 367 Copynumber: 3.7 Consensus size: 362
26798519 ACTCGTTTCG
* * *
26798529 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATCCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
* **** ***** * * * * * ** * * *
26798594 GCATATGGAGTTCATCCCCAG-TCTAAGGAGGATCGGCAGCACACATAGGGGATCGAGCTGATCC
66 -CAT-CGGACCGGATTGAGGGTTCGAAGCAAGATCGGTAGCACGCAGGGGGGACCGGGCCGATCC
* * * * * *
26798658 CCGGCTTGCGCTTTCTGCCTCTCCGATCGACTGAGTGCCCGCATGCTCGTTTCGTGGGTTGGCTT
129 CCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* *
26798723 AGGCATGTC-GAGTACATTCCACGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGTAGCAGGACCG
194 AGGCAT-ACGGAGTACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACC-
* *
26798787 ACAGCGGGATCGGTAGCACGTAGAGGGGGATCGAGCTGATCCCTGGCTTGCGCATTATGCCTCTC
257 ACAGCGGGATCGGTAGCACGTAGA-GGGGATCG-GGTGATCCC-GACTTGCGCATTATGCCTCTC
* * ** * * *
26798852 CAACCGACCTTTTTGGTTAGCTGAGCACCCGCACGCTCATTTTA
319 CAACCGGCCTCTCCGATCAGCTGAGCGCCCGCACGCTCATTTTA
* * * *
26798896 TGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATATGGAGTTCATCCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
* **** **** * * ** * * *
26798961 GCATATGGAGTTCATTCCCAG-TCTAAGCAGGATCGACAGTACGCAGGGGGGATCGGGTCGATCC
66 -CAT-CGGACCGGATTGAGGGTTCGAAGCAAGATCGGTAGCACGCAGGGGGGACCGGGCCGATCC
* * * * *
26799025 CCAGCTTACGCTTTCTGCCTCTCCGGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTT
129 CCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* * * * * **
26799090 AGGCATATGAAGTACATTCCACGTCTAAGCCCCAGCCAGACCGAGGGTTGT-GCAGCAGGATCGG
194 AGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGA-CCA
* * * * * *
26799154 CAGTGGGATCGGTAGCACATAGAGGCAGATCGGGTTGATCCCCAGCTTGTGCATTATACCTCTCC
258 CAGCGGGATCGGTAGCACGTAGAGG-GGATCGGG-TGATCCCGA-CTTGCGCATTATGCCTCTCC
* * * *
26799219 AACCGGCCTCTCCGATCGGCTGAGCGCCCGCACGTTCGTTTCA
320 AACCGGCCTCTCCGATCAGCTGAGCGCCCGCACGCTCATTTTA
* * *
26799262 TGGGTTGACTTAGGCATGCGGAGTTCATCCCCAGTCTAAGCATGC-AGAGTTCATTCTCAGTCTA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTA
* ** *
26799326 AGATCAAATCGGATTGAGGGTTACGACAGCAAGATCGGTAGCACGCAGGGGGGACCGGGCCGATC
65 ACATCGGACCGGATTGAGGGTT-CGA-AGCAAGATCGGTAGCACGCAGGGGGGACCGGGCCGATC
* * * * * * *
26799391 CCCGGCTTACGCATTCTACCTCTCTGACCGGCTGAGCGCCTGCATGCTTGTGTCATGGGTTGGCT
128 CCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
*
26799456 TAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCATGACCA
193 TAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCA
* ** * * *
26799521 CCAGCGAGATCGACAGCACGTAGAGAGGGATCGGGTAGATCCTCGACCTGCGCATTATGCTTCTT
258 -CAGCGGGATCGGTAGCACGTAGAG-GGGATCGGGT-GATCC-CGACTTGCGCATTATGCCTCTC
** * * * * * * *
26799586 CGGCTGGCCTCTCCGATCAGCTGACCGCTCGTATGCTCTTTTTG
319 CAACCGGCCTCTCCGATCAGCTGAGCGCCCGCACGCTCATTTTA
26799630 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
* * * * * * *
26799695 CATCGGACCGGACTGAGGGTTGCGATAGTATGATCGGTAGCATGCAGAGGGGACCGGACTGATCC
66 CATCGGACCGGATTGAGGGTT-CGA-AGCAAGATCGGTAGCACGCAGGGGGGACCGGGCCGATCC
** * * * * *
26799760 CTTGCTTGCGCATTCTGCCTCTCCAACTGGCTGAGCTCCCGCACGCCCGTTTCGTGGGTTGGCTT
129 CCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* * *
26799825 AGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGTA
194 AGGCATACGGAG-TACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTA
26799880 ATGGGACCGG
Statistics
Matches: 819, Mismatches: 149, Indels: 31
0.82 0.15 0.03
Matches are distributed among these distances:
364 5 0.01
365 6 0.01
366 150 0.18
367 356 0.43
368 297 0.36
369 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (362 bp):
TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
CATCGGACCGGATTGAGGGTTCGAAGCAAGATCGGTAGCACGCAGGGGGGACCGGGCCGATCCCC
GGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
GCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCACAG
CGGGATCGGTAGCACGTAGAGGGGATCGGGTGATCCCGACTTGCGCATTATGCCTCTCCAACCGG
CCTCTCCGATCAGCTGAGCGCCCGCACGCTCATTTTA
Found at i:26800905 original size:26 final size:25
Alignment explanation
Indices: 26800869--26800947 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
26800859 GTTAACTTAG
26800869 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAC-GAGTTCATCCCCAGTCTAA
26800895 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATAC-GAGTTCATCCCCAGTCTAA
*
26800921 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACG-AGTTCATCCCCAGTCTAA
26800947 G
1 G
26800948 ATCAGACCAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
25 1 0.02
26 49 0.98
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (25 bp):
GCATACGAGTTCATCCCCAGTCTAA
Found at i:26801382 original size:159 final size:156
Alignment explanation
Indices: 26800921--26801423 Score: 439
Period size: 159 Copynumber: 3.2 Consensus size: 156
26800911 CCCAGTCTAA
* * **
26800921 GCATAC-GAAGTTCATTCCCA-GTCTAAGATCAGACCAAAATGAGGGTTGCGGCAATAGGATCGA
1 GCATACAG-AGTTCATT-CCATGTCTAAGATCACACC-AAATGAGGGTTGCGGTAGCAGGATCGA
* * * *
26800984 CAGCACGCAG-GGGGGACTAGGTCGATCCCCGGCTTGCGTATTCTACCTCTCCGGTCGGCTGAGC
63 CAGCACGCAGAGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTACCTCTCTGGTCGGCTGAGC
*
26801048 GCC-CATACGCTTGTTTCATGGGTTGGCTTAG
128 GCCGC--ACG-TTGTTTCATGGGTTGACTTAG
** * * * * ** * * * *
26801079 GCATAGGGAGCTCATTCCATGTCTAAG-CCCCAGTCGGATCGAGGTTTGTGGTAGCAGGACCGGC
1 GCATACAGAGTTCATTCCATGTCTAAGATCACA-CCAAAT-GAGGGTTGCGGTAGCAGGATCGAC
* * * * * * *
26801143 AGCACGCAGAGGGGGAACAGGCCGAACACC-GACTTGCGCATTATGCCTCT-TCGGTCGGCTCAG
64 AGCACGCAGAGGGGGACCAGGTCGATCCCCAG-CTTGCGCATTCTACCTCTCT-GGTCGGCTGAG
* * *
26801206 CACCTGCACACTTGTTTCATGGGTTGACTTAT
127 CGCC-GCAC-GTTGTTTCATGGGTTGACTTAG
* *
26801238 GCATACAGAGTTCATTCCCA-GTCTAAGATCACACCAAACTGAGGGTTGCAGTAGCAGGATTGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCACACCAAA-TGAGGGTTGCGGTAGCAGGATCGAC
* ** *
26801302 AGCACGCAGAGGGGGACCAGGTCGATCCCTAGCTTGCGCATTCTACCTCTCTGACCAGCTGAGCG
64 AGCACGCAGAGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTACCTCTCTGGTCGGCTGAGCG
*
26801367 CTCGCACGTTCGTTTCGTGGGTT-AGCTTAG
129 C-CGCACGTT-GTTTCATGGGTTGA-CTTAG
*
26801397 GCATATAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
26801424 CATACGGAGC
Statistics
Matches: 267, Mismatches: 59, Indels: 37
0.74 0.16 0.10
Matches are distributed among these distances:
157 7 0.03
158 53 0.20
159 196 0.73
160 10 0.04
161 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (156 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCACACCAAATGAGGGTTGCGGTAGCAGGATCGACAG
CACGCAGAGGGGGACCAGGTCGATCCCCAGCTTGCGCATTCTACCTCTCTGGTCGGCTGAGCGCC
GCACGTTGTTTCATGGGTTGACTTAG
Found at i:26802169 original size:26 final size:26
Alignment explanation
Indices: 26802119--26802171 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26802109 GTTGACTTAG
*
26802119 GCATACGGAGTTCATCCACAGTCTAA
1 GCATACGGAGTTCATCCACAATCTAA
*
26802145 GCATATGGAGTTCATTCC-CAATCTAA
1 GCATACGGAGTTCA-TCCACAATCTAA
26802171 G
1 G
26802172 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAATCTAA
Found at i:26802534 original size:26 final size:26
Alignment explanation
Indices: 26802486--26802538 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26802476 GTAGACTTAG
* *
26802486 GCATACGGAGTTTATCACTAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
26802512 GCATACGGAGTTCATTC-CCAGTCTAA
1 GCATACGGAGTTCA-TCACCAGTCTAA
26802538 G
1 G
26802539 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:26802990 original size:158 final size:157
Alignment explanation
Indices: 26802512--26803329 Score: 561
Period size: 159 Copynumber: 5.2 Consensus size: 157
26802502 ACTAGTCTAA
* * * * * *
26802512 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGAGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCA-ACCGGACAGAGGGTTGTGGCAACAGGATCGAC
* ** * * * * * *
26802576 AGCATGCA-GGGGGCCCGGGTCGAT-CCTCAGCTTACGCATTCTGCCTT-TTCGGTCGGCTGAGT
64 AGCACGCAGGGGGGATCGGGTCGATCCCT-GGCTTGCACATTCTG-CTTCTCCGGCCGGCTGAGC
* * *
26802638 GCCCGCACGCCCGTTTCATGGGTTCG-CTTAG
127 GCCTGCACGCTCGTTTCGTGGGTT-GACTTAG
* * ** * * * * * *
26802669 GCATAGGGAGCTCAATT-CATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGTAGC-GAGATCGG
1 GCATACGGAGTTC-ATTCCATGTCTAAG-ATCAACCGGACAGAGGGTTGTGGCAACAG-GATCGA
* * * * * * * * * * * * *
26802732 CAACACGCAGAAGGGGA-CTGGGCCGAACCCCGACTTTCGCATTATGCCTCTTCGGCCAGCTCAG
63 CAGCACGCAG-GGGGGATC-GGGTCGATCCCTGGCTTGCACATTCTGCTTCTCCGGCCGGCTGAG
* * **
26802796 TGCCTGCACGCTCATTTCGTGGGTTGACTTTT
126 CGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
* *
26802828 GCATACGGAGTTCATTCCCA-GTCTAAGATCATACCAGACAGAGGGTTGCGGCAACAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCA-ACCGGACAGAGGGTTGTGGCAACAGGATCGAC
* * * * * * *
26802892 AGTATGCAGGGGGGATCGGGTCGATCCCTAGCTTACATATTCTGCTTCTCCGGCCGACTGAGCAC
64 AGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCACATTCTGCTTCTCCGGCCGGCTGAGCGC
* *
26802957 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CTGCACGCTCGTTTCGTGGGTTGACTTAG
** * * * *
26802986 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTGTGGCAAC-GG-TACTAG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAACCGGACAGAGGGTTGTGGCAACAGGAT-CGA-
* * * * * * *
26803049 CAGCACGCAGAGAGGGACCGGG-CTGATCCCTGGCTCGCACATTATGCCTCTTCGGCCGGCTCAG
63 CAGCACGCAG-GGGGGATCGGGTC-GATCCCTGGCTTGCACATTCTGCTTCTCCGGCCGGCTGAG
* *
26803113 CGCCTGCACGCTCGTTTCGTGGGTTAACTTAT
126 CGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
**
26803145 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGACCGGACCA-AGGGTTGTGGCAACAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGA-TCAACCGGA-CAGAGGGTTGTGGCAACAGGATCGA
** * ** * * *
26803208 CAGCACGTGGGGGGGATCGGGTCAAT-CCTCGGCTTGTGCATTCTACCTT-TCCGACCGGTTGAG
63 CAGCACGCAGGGGGGATCGGGTCGATCCCT-GGCTTGCACATTCT-GCTTCTCCGGCCGGCTGAG
* * * *
26803271 TGCCTGCATGCTCGTTTCATGGGTTGGCTTAG
126 CGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
26803303 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
26803330 CATACGGAGT
Statistics
Matches: 509, Mismatches: 122, Indels: 59
0.74 0.18 0.09
Matches are distributed among these distances:
156 4 0.01
157 60 0.12
158 205 0.40
159 226 0.44
160 13 0.03
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAACCGGACAGAGGGTTGTGGCAACAGGATCGACAG
CACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCACATTCTGCTTCTCCGGCCGGCTGAGCGCCT
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:26803094 original size:317 final size:316
Alignment explanation
Indices: 26802512--26803330 Score: 1004
Period size: 317 Copynumber: 2.6 Consensus size: 316
26802502 ACTAGTCTAA
* * * * *
26802512 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGAGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAACAGGATCGACA
** * *
26802577 GCATGCA-GGGGGCCCGGGTCGATCCTCAGCTTACGCATTCTGCCTTTTCGGTCGGCTGAGTGCC
66 GCATGCAGGGGGGATCGGGTCGATCCTCAGCTTACGCATTCTG-CTTTCCGGCCGGCTGAGTGCC
* * * *
26802641 CGCACGCCCGTTTCATGGGTTCGCTTAGGCATAGGGAGCTCAATT-CATGTCTAAGCCCCAGCCA
130 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTC-ATTCCATGTCTAAGCCCCAGCCA
* * * * **
26802705 GACTGAGGGTTGTGGTAGCGAGATCGGCAACACGCAGAAGGGGACTGGGCCGAACCCCGACTTTC
194 GACTGAGGGTTGTGGCAACGAGATCAGCAACACGCAGAAGGGGACCGGGCCGAACCCCGACTCGC
* * * *
26802770 GCATTATGCCTCTTCGGCCAGCTCAGTGCCTGCACGCTCATTTCGTGGGTTGACTTTT
259 ACATTATGCCTCTTCGGCCAGCTCAGCGCCTGCACGCTCATTTCGTGGGTTAACTTAT
* *
26802828 GCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGACAGAGGGTTGCGGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAACAGGATCGACA
* ** * **
26802893 GTATGCAGGGGGGATCGGGTCGATCC-CTAGCTTACATATTCTGCTTCTCCGGCCGACTGAGCAC
66 GCATGCAGGGGGGATCGGGTCGATCCTC-AGCTTACGCATTCTGCTT-TCCGGCCGGCTGAGTGC
* **
26802957 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * *
26803022 GACTGAGGGTTGTGGCAACG-G-TACTAGCAGCACGCAG-AGAGGGACCGGGCTGATCCCTGGCT
194 GACTGAGGGTTGTGGCAACGAGAT-C-AGCAACACGCAGAAG-GGGACCGGGCCGAACCCCGACT
* *
26803084 CGCACATTATGCCTCTTCGGCCGGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTAACTTAT
256 CGCACATTATGCCTCTTCGGCCAGCTCAGCGCCTGCACGCTCATTTCGTGGGTTAACTTAT
** *
26803145 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCA-AGGGTTGTGGCAACAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CAGAGGGTTGCGGCAACAGGATCGAC
* ** * * ** * * *
26803209 AGCACGTGGGGGGGATCGGGTCAATCCTCGGCTTGTGCATTCTACCTTTCCGACCGGTTGAGTGC
65 AGCATGCAGGGGGGATCGGGTCGATCCTCAGCTTACGCATTCT-GCTTTCCGGCCGGCTGAGTGC
* *
26803274 CTGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
129 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
26803331 ATACGGAGTT
Statistics
Matches: 428, Mismatches: 65, Indels: 19
0.84 0.13 0.04
Matches are distributed among these distances:
315 1 0.00
316 75 0.18
317 346 0.81
318 6 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGAGGGTTGCGGCAACAGGATCGACA
GCATGCAGGGGGGATCGGGTCGATCCTCAGCTTACGCATTCTGCTTTCCGGCCGGCTGAGTGCCC
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
CTGAGGGTTGTGGCAACGAGATCAGCAACACGCAGAAGGGGACCGGGCCGAACCCCGACTCGCAC
ATTATGCCTCTTCGGCCAGCTCAGCGCCTGCACGCTCATTTCGTGGGTTAACTTAT
Found at i:26803333 original size:26 final size:26
Alignment explanation
Indices: 26803303--26803381 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
26803293 GTTGGCTTAG
26803303 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
26803329 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
* *
26803355 GCATACCGAGCTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
26803381 G
1 G
26803382 ATTTTGAGCC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 47 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:26804099 original size:26 final size:26
Alignment explanation
Indices: 26804063--26804115 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26804053 GTTGACTTAG
26804063 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26804089 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26804115 G
1 G
26804116 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26804757 original size:159 final size:157
Alignment explanation
Indices: 26804544--26804960 Score: 475
Period size: 157 Copynumber: 2.6 Consensus size: 157
26804534 GGACCGGACT
** *
26804544 GATCCCCGGCTTACGCATTCTGCCTCTCTGGCCGACTGTGCGCCCGCACGCTCGTTTCATGGGTT
1 GATCCCCGGCTTACGCATTCTGCCTCT-TGGCCGACTAAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * * *
26804609 GGCTTAGGCATAGGGA-TCTCATTCCATGTCTAAGCCCCAG-TCGGACAGAGGGTTGTGGCAGCG
65 GGCTTAGGCATACGGAGT-TCATTCCATGTCTAAGCACCAGACCGGACAGA-GGTTGCGGCAGCA
**
26804672 GGATCGACAGGACGCAGAAGGGGA-TCGGGCC
128 GGATCGACAACACGCAG-AGGGGACT-GGGCC
* * * * *
26804703 GATCCCCGACTTGCGCATTATGCCTCTTAGGCCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTACGCATTCTGCCTCTT-GGCCGACTAAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
26804768 GACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGTTGCGGCAGCAG
65 GGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACAGAGGTTGCGGCAGCAG
* * *
26804831 GATCGACAACACGTAGGGGGGACTGGGTC
129 GATCGACAACACGCAGAGGGGACTGGGCC
* ** * * *
26804860 GATCCCTGGCTTTTGCATGCTGCCTCTCCGGTCGACTAAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTACGCATTCTGCCTCT-TGGCCGACTAAGCGCCCGCACGCTCGTTTCGTGGGTT
26804925 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
26804961 TATGGAGCTC
Statistics
Matches: 217, Mismatches: 33, Indels: 17
0.81 0.12 0.06
Matches are distributed among these distances:
156 3 0.01
157 91 0.42
158 31 0.14
159 88 0.41
160 4 0.02
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.24
Consensus pattern (157 bp):
GATCCCCGGCTTACGCATTCTGCCTCTTGGCCGACTAAGCGCCCGCACGCTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACAGAGGTTGCGGCAGCAGGA
TCGACAACACGCAGAGGGGACTGGGCC
Found at i:26804919 original size:157 final size:158
Alignment explanation
Indices: 26804464--26804958 Score: 527
Period size: 159 Copynumber: 3.1 Consensus size: 158
26804454 CTAAGTATAT
* * * * * *
26804464 GGAGTTCATTCCCA-GTCTAAGATCAGATCAGACTGAGGGTTTCGGCAGTAAGATTGGCAGCACG
1 GGAGTTCATT-CCATGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACG
* * * **
26804528 CAAGGGGGAC-CGGACTGATCCCCGGCTTACGCATTCTGCCTCTCTGGCCGACTGTGCGCCCGCA
65 CAGGGGGGACTGGGAC-GATCCCCGGCTTACGCATTCTGCCTCTCAGGCCGACTAAGCGCCCGCA
* *
26804592 CGCTCGTTTCATGGGTTGGCTTAGGCATAG
129 CGCTCGTTTCGTGGGTTGGCTTAGGCATAC
** * * * *
26804622 GGA-TCTCATTCCATGTCTAAGCCCCAG-TCGGACAGAGGGTTGTGGCAGCGGGATCGACAGGAC
1 GGAGT-TCATTCCATGTCTAAG-ATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * * * * * * *
26804685 GCAGAAGGGGA-TCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTAGGCCGGCTCAGCGCCCG
64 GCAG-GGGGGACT-GGGACGATCCCCGGCTTACGCATTCTGCCTCTCAGGCCGACTAAGCGCCCG
* *
26804749 CACGCTCGTTTCGTGGGTTGACTTATGCATAC
127 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* *
26804781 GGAGTTCATTCCCA-GTCTAAGATCAGACCGGACTGA-GGTTGCGGCAGCAGGATCGACAACACG
1 GGAGTTCATT-CCATGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACG
* * * ** * * *
26804844 TAGGGGGGACTGGGTCGATCCCTGGCTTTTGCATGCTGCCTCTCCGGTCGACTAAGCGCCCGCAC
65 CAGGGGGGACTGGGACGATCCCCGGCTTACGCATTCTGCCTCTCAGGCCGACTAAGCGCCCGCAC
26804909 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
130 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
26804938 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
26804959 CATATGGAGC
Statistics
Matches: 274, Mismatches: 52, Indels: 23
0.79 0.15 0.07
Matches are distributed among these distances:
156 3 0.01
157 95 0.35
158 73 0.27
159 96 0.35
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GGAGTTCATTCCATGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGC
AGGGGGGACTGGGACGATCCCCGGCTTACGCATTCTGCCTCTCAGGCCGACTAAGCGCCCGCACG
CTCGTTTCGTGGGTTGGCTTAGGCATAC
Found at i:26805684 original size:26 final size:26
Alignment explanation
Indices: 26805654--26805706 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26805644 GTTGACTTAG
*
26805654 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
26805680 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26805706 G
1 G
26805707 ATAAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26805874 original size:26 final size:26
Alignment explanation
Indices: 26805837--26805886 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26805827 GTTGACTTAG
26805837 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
26805863 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATCCCCAGTCT
26805887 CAGATCAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26805910 original size:183 final size:184
Alignment explanation
Indices: 26805631--26806027 Score: 476
Period size: 183 Copynumber: 2.2 Consensus size: 184
26805621 ACACTCGCAT
*
26805631 GCTCGTTTCAG-GGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCAT
1 GCTCGTTTC-GTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCAT
*** ** ** * * * *
26805695 TCCCAGTCTAAGATAAGATTGGATTGAGGGTTACGGTAGTAGGATCGGTAGCACACAGTGAGGAT
65 TCCCAGTCTAAGATAAGACCAGATCAAGGGTTACGACAGCAGGATCGATAGCACACAGGGAGGAC
* * * ** *
26805760 C-GAGCCGAT-CCTGACTTGTGCATTCTGCCTCTCCGACCGGCTAAGTGCTCACAC
130 CAGA-CCGATCCCCGACTTGCGCATTCTGCCTCTCCGACAGGCTAAGCACCCACAC
*
26805814 GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATT
* * * * * *
26805879 CCCAGTCTCAGATCAGCCCAGATCAAGGGTTACGACAGCAGGATTGATAGCACGCAGGGGGGACC
66 CCCAGTCTAAGATAAGACCAGATCAAGGGTTACGACAGCAGGATCGATAGCACACAGGGAGGACC
* ** *
26805944 AGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGTTAGGCTAAGCACCCGCAC
131 AGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGACAGGCTAAGCACCCACAC
* *
26805998 GCTCGTTTCGTGGTTTGGCTTAGGCATACG
1 GCTCGTTTCGTGGGTTGACTTAGGCATACG
26806028 GGTGTTTGAA
Statistics
Matches: 180, Mismatches: 31, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
182 1 0.01
183 114 0.63
184 65 0.36
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (184 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATT
CCCAGTCTAAGATAAGACCAGATCAAGGGTTACGACAGCAGGATCGATAGCACACAGGGAGGACC
AGACCGATCCCCGACTTGCGCATTCTGCCTCTCCGACAGGCTAAGCACCCACAC
Done.