Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 279 of 402
Found at i:26806459 original size:26 final size:26
Alignment explanation
Indices: 26806423--26806473 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26806413 TTGAGTTAGG
26806423 CATACGGAGTTC-TTCCCCAGTCTAAA
1 CATACGGAGTTCATT-CCCAGTCTAAA
*
26806449 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
26806474 GATCGAATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:26806807 original size:26 final size:26
Alignment explanation
Indices: 26806777--26806829 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26806767 GTTGACTTAG
*
26806777 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGCTCATCCCCAGTCTAA
* *
26806803 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATCCCCAGTCTAA
26806829 G
1 G
26806830 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGCTCATCCCCAGTCTAA
Found at i:26807028 original size:355 final size:362
Alignment explanation
Indices: 26806388--26807286 Score: 1186
Period size: 355 Copynumber: 2.5 Consensus size: 362
26806378 TGGTTGGCTG
* * * * *
26806388 AGCGCCCGCATGCTCGTTTCATGGGTTGAGTTAGGCATACGGAGTTCTTCCCCAGTCTAAACATA
1 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATA
* ** ** *
26806453 TGGAGTTCATTCCCAGTCTAAGATCGAATTGGATCGAGGGTTGCCACAGTGGGATCGGTAGCACA
66 TGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACA
* * * * * *
26806518 CAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACTTCTCCGACCGACTGAGCGCCTGCAC
131 TAAGGGGGACCGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTCCGACCGACTCAGCGCCCGCAC
* *
26806583 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACAATCCACGTCTAAGCCCTAGCCAGACCGA
195 ACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACAATCCACGTCTAAGCCCTAGCCAGACCGA
* * * **
26806648 GGGTTGTGGCAGTAGGACTGACAGCGAGATCAGCAGTACGTAGAGGGGGACCGGGCTGATCTTCG
260 GGGTTGTGGCAGTAGGACCGACAGCGAGATCAGCAGCACGTAGAGGGGAACCGGGCTGATCCCCG
*
26806713 GATTGTGTAATATGCCTC-T-CC-A-G-T-CGA-A-TA
325 GATTGTGCAATATGCCTCTTACCGAGGCTCCGACACTA
*
26806743 AGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATA
1 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATA
* * * * * *
26806808 CGGAGCTCATTCCCAGTCTAAGATCGAATCAGATTGAGGGTTGCGGCAGCAGGATCGACAGCGCA
66 TGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACA
* * *
26806873 TAAGGGGGACCGGGCCGATCCCTCGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGTGCCCGCAC
131 TAAGGGGGACCGGGCCGATCCC-CGCTTGCGCATTCTGCCTCTCCGACCGACTCAGCGCCCGCAC
* * *
26806938 ATTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTTCACGTCTAAGCCCTAGCCAGACCGA
195 ACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACAATCCACGTCTAAGCCCTAGCCAGACCGA
* * *
26807003 GGGTTGTGGCAGTAGGACCGACAGCGGGATCGGCAGCACGTAGAGGGGAATCGGGCTGATCCCCG
260 GGGTTGTGGCAGTAGGACCGACAGCGAGATCAGCAGCACGTAGAGGGGAACCGGGCTGATCCCCG
* *
26807068 GCTTGTGCATTATGCCTCTTGACCGAGGTCTCCGACCGACTA
325 GATTGTGCAATATGCCTCTT-ACCGAGG-CTCCGA-C-ACTA
* *
26807110 AGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATA
1 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATA
* * * * * *
26807175 TGGAGTTCATTCCTAATCTATGAT-AAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
66 TGGAGTTCATTCCCAGTCTAAGATCGA-ATCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
*
26807239 ATAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCG
130 ATA-AGGGGGACCGGGCCGATCCCCG-CTTGCGCATTCTGCCTCTCCG
26807287 GCTGGTTGGG
Statistics
Matches: 469, Mismatches: 59, Indels: 19
0.86 0.11 0.03
Matches are distributed among these distances:
355 298 0.64
356 2 0.00
358 2 0.00
359 1 0.00
360 1 0.00
362 1 0.00
363 3 0.01
366 2 0.00
367 119 0.25
368 40 0.09
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (362 bp):
AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATA
TGGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACA
TAAGGGGGACCGGGCCGATCCCCGCTTGCGCATTCTGCCTCTCCGACCGACTCAGCGCCCGCACA
CTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACAATCCACGTCTAAGCCCTAGCCAGACCGAG
GGTTGTGGCAGTAGGACCGACAGCGAGATCAGCAGCACGTAGAGGGGAACCGGGCTGATCCCCGG
ATTGTGCAATATGCCTCTTACCGAGGCTCCGACACTA
Found at i:26807686 original size:26 final size:26
Alignment explanation
Indices: 26807646--26807698 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26807636 GTTGGCTTAG
* *
26807646 GCATACGGAGTTCATT-CCATATCTAA
1 GCATACGAAGCTCATTCCCAT-TCTAA
26807672 GCATACGAAGCTCATTCCCATTCTAA
1 GCATACGAAGCTCATTCCCATTCTAA
26807698 G
1 G
26807699 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCATTCTAA
Found at i:26808767 original size:26 final size:26
Alignment explanation
Indices: 26808731--26808783 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26808721 GTTGACTTAG
26808731 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
26808757 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26808783 G
1 G
26808784 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26809078 original size:367 final size:366
Alignment explanation
Indices: 26808327--26809311 Score: 1061
Period size: 367 Copynumber: 2.7 Consensus size: 366
26808317 TCTGGTCGAC
* *
26808327 TGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGGA
1 TGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
* *
26808392 TACGGAGTTCATTCTCAGTCTAAGATC-AGACCGGATCGAGGGTTGTGGCAGCAGGATCGGCAGC
66 TAC-GAGTTCATTCCCAGTCTAAGATCGA-ACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGC
** * * * * *
26808456 GTGCAGGGGGCACCGGGCCGATCCCCGACTTGCGTATTCTGCCTCTCTGGCCGGCTGAGCGCCCG
129 ACGCAGGGGG-ACCGGGTCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTGAGCGCCCG
* *
26808521 CACGCTAGTTTCGTGGGTTGGCCTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAATCGGAC
193 CACGCTAGTTTCGTGGGTTGGACTAGGCATACGAAGTACATTCCATGTCTAAGCCCCAATCGGAC
* * * * * *
26808586 CGAAGGTTGTGGCAGCAAGATCGATAGCGGGATTGGCAACACGCAGAGGGGGACCGAACTGATCC
258 CGAAGGTTATGGCAGCAAGACCAACAGCGGGATCGGCAACACGCAGAGGGGGACCGAACTGATAC
* * ** **
26808651 CCGGCTTGCACATTATGCCTCTCCGTTCAACCTTTCCGGTAGGT
323 CCGACTTACACATTATGCCTCTCCGGCCAACCTTTCCGACAGGT
* * *
26808695 TGAGCACCCACACGCTCATTTTGTGGGTTGACTTAGGCATAC-AGAGTTCATCCCCAGTCTAAGC
1 TGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGA-AGTTCATCCCCAGTCTAAGC
* * *
26808759 ATACAGAGTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGTAGCAGGATCGGTAGC
65 ATAC-GAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * ** *
26808824 ACGCAGAGCGGACCGGGTCAATCCCCG-GTTACGCATTCTACCTCTCCGGTTGGTTGAGCGCCCG
129 ACGCAG-GGGGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTGAGCGCCCG
* * * * * * *
26808888 CTCGCTCA-TTTCGTGGGTTTGATTAGGCATACGAAGTATATTCCATGTCTAGGCCTCAGTCGGA
193 CACGCT-AGTTTCGTGGGTTGGACTAGGCATACGAAGTACATTCCATGTCTAAGCCCCAATCGGA
* * * * * * **
26808952 CCGAGGGTTATGGTAGCAGGACCAACAGCTGGATCGGTAGCACGCAGAGGGGGACC-AGGTTGAT
257 CCGAAGGTTATGGCAGCAAGACCAACAGCGGGATCGGCAACACGCAGAGGGGGACCGA-ACTGAT
* *** * ** *
26809016 ACTCGACTTATGGATTATGCCTCTCTGGCCGGCCTTTCCGACCGGT
321 ACCCGACTTACACATTATGCCTCTCCGGCCAACCTTTCCGACAGGT
* *
26809062 TGAGTGCCCGCACGCTCGTTTCT-TGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGC
1 TGAGCGCCCGCACGCTCGTTT-TGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
* * * * * *
26809126 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACGGCAACAGGATTGGCATC
65 ATACG-AGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * * * *
26809191 ACGCAGGGGGGACCGGGTCGATCCCAGGCTTGCACATTCTGCCTCTCTGACCAGCTGAGCGCCCG
129 ACGCA-GGGGGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTGAGCGCCCG
* * * *
26809256 CATGGC-CGTTTCGTGGGTTGG-CTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCC
193 CA-CGCTAGTTTCGTGGGTTGGAC-TAGGCATACGAAG-TACATTCCATGTCTAAGCCC
26809312 TAGCCGGACT
Statistics
Matches: 505, Mismatches: 98, Indels: 28
0.80 0.16 0.04
Matches are distributed among these distances:
366 2 0.00
367 294 0.58
368 202 0.40
369 7 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (366 bp):
TGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCA
TACGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
GCAGGGGGACCGGGTCGATCCCCGACTTACGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCAC
GCTAGTTTCGTGGGTTGGACTAGGCATACGAAGTACATTCCATGTCTAAGCCCCAATCGGACCGA
AGGTTATGGCAGCAAGACCAACAGCGGGATCGGCAACACGCAGAGGGGGACCGAACTGATACCCG
ACTTACACATTATGCCTCTCCGGCCAACCTTTCCGACAGGT
Found at i:26809137 original size:26 final size:26
Alignment explanation
Indices: 26809098--26809150 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26809088 GTTGACTTAG
26809098 GCATACGAAATTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
* *
26809124 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
26809150 G
1 G
26809151 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:26809589 original size:157 final size:157
Alignment explanation
Indices: 26809124--26809624 Score: 535
Period size: 159 Copynumber: 3.2 Consensus size: 157
26809114 CCCAGTCTAA
* * * * * * *
26809124 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGACCAGATCGAGGGTTACGGCAACAGGATTGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCAGACCGAGGGTT-GGGCAGCAAGATCGGC
* * * *
26809188 ATCACGCAGGGGGGACCGGGTCGAT-CCCAGGCTTGCACATTCTGCCTCTCTGACCAGCTGAGCG
64 AGCACGCAAGGGGGACCGGGTCGATCCCCA-GCTTGCACATTCTGCCTCTCCGACCAGCTGAGTG
* *
26809252 CCCGCATGGC-CGTTTCGTGGGTTGGCTTAG
128 CCTGCA-CGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * * *
26809282 GCATAGGGAGCTCATTCCATGTCTAAGCCCTAGCCGGACTGAGGGTTGTGGCAGCGAGACCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGGTTG-GGCAGCAAGATCGGCA
* ** * * * * * *
26809347 GCACGCAGAGGGGGACCGGGTTGATCTTCGGCTTAG-GCATTATGCCTCTTCGGCCAGCTCAGTG
65 GCACGCA-AGGGGGACCGGGTCGATCCCCAGCTT-GCACATTCTGCCTCTCCGACCAGCTGAGTG
* *
26809411 CCTGCACGCTCGTTTCGTGGGTTGACTTAT
128 CCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
26809441 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTGGGCGGCAAGATCGACC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCAGACCGAGGGTTGGGCAGCAAGATCGGCA
** *
26809505 GCACGCAAGGGGGACCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGACTGGCTGAGTGGC
65 GCACGCAAGGGGGACCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCAGCTGAGTGCC
26809570 TGCACGCTCGTTTCGTGGGTTGGCTTAG
130 TGCACGCTCGTTTCGTGGGTTGGCTTAG
26809598 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
26809625 CATACGGAGC
Statistics
Matches: 273, Mismatches: 61, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
156 4 0.01
157 96 0.35
158 69 0.25
159 99 0.36
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCAGACCGAGGGTTGGGCAGCAAGATCGGCAG
CACGCAAGGGGGACCGGGTCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCAGCTGAGTGCCT
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:26809641 original size:26 final size:26
Alignment explanation
Indices: 26809598--26809649 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26809588 GTTGGCTTAG
*
26809598 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
*
26809624 GCATACGGAGCTCCTTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
26809650 TATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:26810346 original size:26 final size:26
Alignment explanation
Indices: 26810310--26810362 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26810300 GTTGACTTAG
*
26810310 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
26810336 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
26810362 G
1 G
26810363 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:26810696 original size:26 final size:26
Alignment explanation
Indices: 26810667--26810717 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26810657 TGACTTAGGC
26810667 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
* *
26810693 ATACGGTGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
26810718 ATTAGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:26811074 original size:356 final size:350
Alignment explanation
Indices: 26810288--26811388 Score: 986
Period size: 355 Copynumber: 3.1 Consensus size: 350
26810278 CGCCCGTACG
*
26810288 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
* * ** * *
26810353 CCAATCTAAGATCGGACCGGATCGAATATTGCGGCAGCAGGATCGG-TAGCACGCAAGGAGGACC
66 CCAGTCTAAGATCGGATCGGATCGAAGGTTGCGGCAGCAGGAT-GGATAGCACGCAGGGGGGA-C
* * * * * * *
26810417 G-GGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCAGCTGAAG-GCCTGCAAGCTCATTTC
129 GAGGTCGATCCCTGGCTTGTGAATTCTGCCTCTCTGACCGGCTG-AGCGCCCGCACGCTCGTTTC
* * * * * * *
26810480 GTGGGTTGGCTTAGGCATACGGAGTACATTCCACATTTTAGCCCCAGCCAGACCGAGGGTTGTGG
193 ATGGGTTGGCTTAGGCAAACGGAGTACAATCCACATCTAAGCCCCAACCAGACCGAAGGTTGTGG
*
26810545 CAACAGGACCGGCAGCGTGATCGACAACACGCAGAGGGGGACCGAGCTGATCCCCGGCTTACGCA
258 CAACAGGACCGACAGC--GATCG---ACACGCAGAGGGGGACCGAGCTGATCCCCGGCTTACGCA
* ** *
26810610 TTATGCCTTTCCAGTCGACTGAGTGCCCGTACG
318 TTATGCCTTTCCACTCGACTGAGTGCCCACACA
* *
26810643 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTATACGGTGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
** * * * * *
26810708 CCAGTCTAAGATTAGATCGGATCTAAGGTTGCGACAGTAGGATGGACAGCATGCAGGGGGGACGA
66 CCAGTCTAAGATCGGATCGGATCGAAGGTTGCGGCAGCAGGATGGATAGCACGCAGGGGGGACGA
* *
26810773 GGCCGATCCCTGGCTTGCGAATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCATG
131 GGTCGATCCCTGGCTTGTGAATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCATG
* * * * *
26810838 GGTTGGCTTAGGCAAACGGAGTACAATCCACATCTAAGCCCTAATCGGACCGAAGGTTGTGGTAG
196 GGTTGGCTTAGGCAAACGGAGTACAATCCACATCTAAGCCCCAACCAGACCGAAGGTTGTGGCAA
* * * * * * *
26810903 CAGGACCGACAGC-AT-G-TA-G-A-A-GGGGATCGGGTTGATCTCCGGCTTACGTATTATGTCT
261 CAGGACCGACAGCGATCGACACGCAGAGGGGGACCGAGCTGATCCCCGGCTTACGCATTATG-CC
*
26810961 TTTCGATCGACCTCTCTGACCGGCTGAGTGCTCACACA
325 TTTC---C-A---CTC-GA----CTGAGTGCCCACACA
* * *
26810999 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTTAATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
26811064 CCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGAATCGATAGCACGCAGGGGGGACCA
66 CCAGTCTAAGATCGGATCGGATCGAAGGTTGCGGCAGCAGGATGGATAGCACGCAGGGGGGACGA
* * * *** * * *
26811129 GGTCGATCCCTGACTTATGTATTCTGCCTCTCTGGTTGGCTGAGCGCCCGCACACCCGTTTCATA
131 GGTCGATCCCTGGCTTGTGAATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCATG
* * * ** * ** *
26811194 GGTTGGCTTAGGCATATGGAGCT-CATTCCATGTCTAAACCCC-A-TGGACTGAAGGTTGTGGCA
196 GGTTGGCTTAGGCAAACGGAG-TACAATCCACATCTAAGCCCCAACCAGACCGAAGGTTGTGGCA
* * * * * * * * *
26811256 GCGGGACCG---GC-A---ACACACAGAGGTGGACC-AGGCCGATGCCCGGTTTGCGTATTATGC
260 ACAGGACCGACAGCGATCGACACGCAGAGGGGGACCGA-GCTGATCCCCGGCTTACGCATTATGC
* * * ** *
26811313 CTCTTCGA-TCGACTCAGCGCCCGTACG
324 CT-TTCCACTCGACTGAGTGCCCACACA
* * *
26811340 CTCGTTTCGTGGGTTAACTTATGCATACGGAGTTCATTCCCAGTCTAAG
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
26811389 ATTGGATCGA
Statistics
Matches: 611, Mismatches: 111, Indels: 62
0.78 0.14 0.08
Matches are distributed among these distances:
341 55 0.09
343 29 0.05
344 6 0.01
345 3 0.00
346 3 0.00
347 2 0.00
348 1 0.00
350 2 0.00
351 6 0.01
352 5 0.01
353 3 0.00
354 57 0.09
355 227 0.37
356 211 0.35
357 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (350 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCGGATCGGATCGAAGGTTGCGGCAGCAGGATGGATAGCACGCAGGGGGGACGA
GGTCGATCCCTGGCTTGTGAATTCTGCCTCTCTGACCGGCTGAGCGCCCGCACGCTCGTTTCATG
GGTTGGCTTAGGCAAACGGAGTACAATCCACATCTAAGCCCCAACCAGACCGAAGGTTGTGGCAA
CAGGACCGACAGCGATCGACACGCAGAGGGGGACCGAGCTGATCCCCGGCTTACGCATTATGCCT
TTCCACTCGACTGAGTGCCCACACA
Found at i:26812280 original size:26 final size:26
Alignment explanation
Indices: 26812246--26812296 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
26812236 TGACTTAGGC
*
26812246 ATACTGAGTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAGTCTAAGT
* *
26812272 ATACAGAGTTCATTCTCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
26812297 ATCGGATTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGT
Found at i:26812908 original size:367 final size:366
Alignment explanation
Indices: 26812214--26813196 Score: 1124
Period size: 367 Copynumber: 2.7 Consensus size: 366
26812204 CGGTTGAGCG
* *
26812214 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACTG-AGTTCATCCCCAGTCTAAGTATAC-A
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATCCCCAGTCTAAGCATACGA
* * * * *
26812277 GAGTTCATTCTCAGTCTAAGATCGGATTGGATCGAGGGTTGCGACAGCAGGATCGGTAGCACGTA
65 -AGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGCAGGATTGATAGCACGTA
* * * * *
26812342 GGGGGGACCGAGTCGAT-CCCTGACTTACGCATTCTGCCTCTCCGGTCGACTGAGCACCTGTACG
129 GGGGGGACGGA-TCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCTGCACG
* * * * *
26812406 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGCCTGACCGAG
192 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCAGACCGAA
* * * * * * *
26812471 GGTTTGGCAGCAGGACCTACAGCATAATCGATAGCATGCAGAGGGGGATCAGGCTGATCCTCGGC
257 GGTTTGACAGCAGGACCGACAGCATAATCGATAGCACGCAGAGGGGGACCAGGCTAATCCCCGAC
*
26812536 TTGCGCATTATGCCTCTCC-GATCGGCCTCTCCGGCCTG-CTGAACA
322 TTGCGCATTATGCCTCTCCGGCT-GGCCTCTCCGG-CTGACTGAACA
* * *
26812581 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCTTACGAAGTTCATCCTCAGTCTAAGCATACGAA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAA
* * * * *
26812646 GTTCATCCCCAGTCTATGATCAGACTGGATCGAGGGTTACGATAGCAGGATTGACAGCACGTA-G
66 GTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGCAGGATTGATAGCACGTAGG
* * *
26812710 GGGGATCGGATCGATCCCCAGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCGCCTGGACGCTC
131 GGGGA-CGGATCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCTGCACGCTC
* *
26812775 ATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCAGACCGAAGGT
195 GTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCAGACCGAAGGT
* ** * * *
26812840 TGTGACAGTAGGACCGGTAGCGA-GATTGATAGTACGCAGAGGGGGACCAGGCTAATCCCCGACT
260 T-TGACAGCAGGACCGACAGC-ATAATCGATAGCACGCAGAGGGGGACCAGGCTAATCCCCGACT
* * ***
26812904 TGCGCATTATGCCTCTTCGGCTGGCCTCTCCGGCTGATTGAGTG
323 TGCGCATTATGCCTCTCCGGCTGGCCTCTCCGGCTGACTGAACA
* * * * *
26812948 CCCGCATGCTCATTTCGTGGGTTGACTCAAGCATAC-AGAGTTCATCCCCAGTCTAAGCATACGG
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATCCCCAGTCTAAGCATACGA
* * * *
26813012 AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGTTTGATGGCACGTAG
65 AGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGCAGGATTGATAGCACGTAG
** * * * * * * ** *
26813077 GGGGGACTGGGCCGATCCCCGGCTTGCACATTTTGCCTCTTCGGCCGGCTGAGCGCCCACACGCC
130 GGGGGAC-GGATCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCTGCACGCT
* *
26813142 CGTTTCGCT-GGTTGGCTTAGGCAT-CGGGAGCT-CATTCCATGTTTAAGCCCCAGCC
194 CGTTTC-ATGGGTTGGCTTAGGCATAC-GGAG-TACATTCCATGTCTAAGCCCCAGCC
26813197 GAACTGAGGG
Statistics
Matches: 519, Mismatches: 83, Indels: 27
0.83 0.13 0.04
Matches are distributed among these distances:
366 114 0.22
367 305 0.59
368 98 0.19
369 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (366 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAA
GTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGCAGGATTGATAGCACGTAGG
GGGGACGGATCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCTGCACGCTCG
TTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCAGACCGAAGGTT
TGACAGCAGGACCGACAGCATAATCGATAGCACGCAGAGGGGGACCAGGCTAATCCCCGACTTGC
GCATTATGCCTCTCCGGCTGGCCTCTCCGGCTGACTGAACA
Found at i:26813005 original size:26 final size:26
Alignment explanation
Indices: 26812976--26813030 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
26812966 GGGTTGACTC
26812976 AAGCATACAGAGTTCATCCCCAGTCT
1 AAGCATACAGAGTTCATCCCCAGTCT
* *
26813002 AAGCATACGGAGTTCATTCCCAGTCT
1 AAGCATACAGAGTTCATCCCCAGTCT
26813028 AAG
1 AAG
26813031 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (26 bp):
AAGCATACAGAGTTCATCCCCAGTCT
Found at i:26813364 original size:158 final size:156
Alignment explanation
Indices: 26813004--26813404 Score: 362
Period size: 158 Copynumber: 2.5 Consensus size: 156
26812994 CCCAGTCTAA
*** *
26813004 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGTTTGATG
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACC-GATCGAGGGTTGCGGCAGCAGGACAGATA
* * * * * *
26813069 GCACGTAGGGGGGACTGGGCCGATCCCCGGCTTGCACATTTTGCCTCTTCGGCCGGCTGAGCGCC
64 GCACGTAGGGGGGACCGGGACAATCCCCGGCTTGCACATTATGCCTCTTCGGCCGACTCAGCGCC
* * *
26813134 CACACGCCCGTTTCGCTGGTTGGCTTAG
129 CACACGCCCGTTTCGATGGATGACTTAG
* * ** * * * *
26813162 GCAT-CGGGAGCTCATTCCATGTTTAAGCCCCAG-CCGAACTGAGGGTTGTGGCAG-TGGACAGG
1 GCATAC-GGAGTTCATTCCA-GTCTAAG-ATCAGACCGATC-GAGGGTTGCGGCAGCAGGACAGA
* * ** *
26813224 TAGCACGTTGAGGGGGACCGGGACAATCCCTGGCTTGTGCATTATGCCTCTTCGGCTGACTCAGC
62 TAGCACGTAG-GGGGGACCGGGACAATCCCCGGCTTGCACATTATGCCTCTTCGGCCGACTCAGC
* * *
26813289 GCCCGCACGCTCGTTTC-ATGGGATGACTTAT
126 GCCCACACGCCCGTTTCGAT-GGATGACTTAG
* **
26813320 GCATACGGAGTTCATTCCTAGTCTAAGATGAGACCAGATCGAGGGTTGCGATAGCAGGATC-GAT
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGACC-GATCGAGGGTTGCGGCAGCAGGA-CAGAT
*
26813384 AGCACGCAGGGGGGCACCGGG
63 AGCACGTAGGGGGG-ACCGGG
26813405 TTGGGCATGT
Statistics
Matches: 188, Mismatches: 42, Indels: 25
0.74 0.16 0.10
Matches are distributed among these distances:
157 21 0.11
158 140 0.74
159 26 0.14
160 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.33, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGATCGAGGGTTGCGGCAGCAGGACAGATAGC
ACGTAGGGGGGACCGGGACAATCCCCGGCTTGCACATTATGCCTCTTCGGCCGACTCAGCGCCCA
CACGCCCGTTTCGATGGATGACTTAG
Found at i:26814236 original size:26 final size:26
Alignment explanation
Indices: 26814207--26814259 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26814197 GTTGACTTAG
*
26814207 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26814233 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26814259 G
1 G
26814260 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26814548 original size:159 final size:157
Alignment explanation
Indices: 26814372--26814893 Score: 484
Period size: 159 Copynumber: 3.3 Consensus size: 157
26814362 CGCTCACCCG
* * * * *
26814372 TTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCAGACTGAAGGTT
1 TTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
* *
26814437 GTGGCAGCGAGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCTCGGTTTACGCATTATGCCT
66 GTGGCAGCGAGACCGACAGCACGCAGAGGGGGACT-GGTCGATCC-CGGCTTATGCATTATGCCT
26814502 CTTCGACCGGCTTAACGCCTGCACGCTCA
129 CTTCGACCGGCTTAACGCCTGCACGCTCA
*
26814531 TTTCATGGGTTGACTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
1 TTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
* * * * *
26814596 GTGGCAGTGGGACCTG-CAGCATGCAGAGGGGGACTGGTCCGATCCCTGACTTATGCGTTATGCC
66 GTGGCAGCGAGACC-GACAGCACGCAGAGGGGGACTGGT-CGATCCC-GGCTTATGCATTATGCC
* *
26814660 TCTTCGGCCGG-TTCAGCAC-CCT-CACACTCA
128 TCTTCGACCGGCTT-A--ACGCCTGCACGCTCA
* * * * * * ** *
26814690 TTTCGTAGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAG-ACTGGATCGGACCGAGGG
1 TTTCATGGGTTGACTTAGGCATACGGAGCTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGG
* ** * * * * *
26814753 TTGTGGTAGC-AGGATTGATAGCACGCAG-GGGGGACCAGGTCGATCCCCAGCTTGTGCATTTTG
64 TTGTGGCAGCGA-GACCGACAGCACGCAGAGGGGGA-CTGGTCGAT-CCCGGCTTATGCATTATG
* * * * * *
26814816 CCTCTCCGATCGGCTGAGCGCCCGCACGCTCG
126 CCTCTTCGACCGGCTTAACGCCTGCACGCTCA
* * * * *
26814848 TTTCATGGGTTGGCTCAGGCATACGGAGTTCATTGCTTGTCTAAGC
1 TTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCATGTCTAAGC
26814894 ATACAGAGCT
Statistics
Matches: 294, Mismatches: 52, Indels: 34
0.77 0.14 0.09
Matches are distributed among these distances:
156 1 0.00
157 3 0.01
158 81 0.28
159 200 0.68
160 7 0.02
161 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (157 bp):
TTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
GTGGCAGCGAGACCGACAGCACGCAGAGGGGGACTGGTCGATCCCGGCTTATGCATTATGCCTCT
TCGACCGGCTTAACGCCTGCACGCTCA
Found at i:26815635 original size:26 final size:26
Alignment explanation
Indices: 26815599--26815651 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26815589 GTTGACTTAG
*
26815599 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTACTCTAA
*
26815625 GCATATGGAGTTCATCCCTACTCTAA
1 GCATACGGAGTTCATCCCTACTCTAA
26815651 G
1 G
26815652 ATAGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTACTCTAA
Found at i:26817745 original size:182 final size:181
Alignment explanation
Indices: 26817517--26817847 Score: 504
Period size: 182 Copynumber: 1.8 Consensus size: 181
26817507 TTCCGACCGG
* *
26817517 CCTCTCCGGCCGACTGAGCGCCCGCACGATCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGGCAGACTGAGCGCCCGCACGATCGTTTCATGAGTTGACTTAGGCATACGGAGTTCAT
* * * *
26817582 CCCCAGTCTAAGCATATGGAGTTCATTTC-AGTCTAAGATCAAACTGGATCGAGGGTTGCGGTAG
66 CCCCAATCTAAG--TATGGAGTTCATTCCTAGTCTAAGATCAAACCGGATCGAGGGTTGCGGCAG
26817646 CAGGATCAACAGCACGTAGGGTGATCGGGCTGATCCCCGGCTTACGCATTCTA
129 CAGGATCAACAGCACGTAGGGTGATCGGGCTGATCCCCGGCTTACGCATTCTA
* *
26817699 CCTCTCCGGACAG-CTGAGCGCTCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCA
1 CCTCTCCGG-CAGACTGAGCGCCCGCACGATCGTTTCATGAGTTGACTTAGGCATACGGAGTTCA
* * *
26817763 TCCCCAATCTAAGTATGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGT
65 TCCCCAATCTAAGTATGGAGTTCATTCCTAGTCTAAGATCAAACCGGATCGAGGGTTGCGGCAGC
**
26817828 AGGATCGGCAGCACGTAGGG
130 AGGATCAACAGCACGTAGGG
26817848 GGGACCGAGC
Statistics
Matches: 134, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
180 14 0.10
181 49 0.37
182 69 0.51
183 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (181 bp):
CCTCTCCGGCAGACTGAGCGCCCGCACGATCGTTTCATGAGTTGACTTAGGCATACGGAGTTCAT
CCCCAATCTAAGTATGGAGTTCATTCCTAGTCTAAGATCAAACCGGATCGAGGGTTGCGGCAGCA
GGATCAACAGCACGTAGGGTGATCGGGCTGATCCCCGGCTTACGCATTCTA
Found at i:26817887 original size:182 final size:180
Alignment explanation
Indices: 26817516--26817936 Score: 501
Period size: 182 Copynumber: 2.3 Consensus size: 180
26817506 TTTCCGACCG
* *
26817516 GCCTCTCCGG-CCGACTGAGCGCCCGCACGATCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
1 GCCTCTCCGGACAG-CTGAGCG-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * *
26817580 ATCCCCAGTCTAAGCATATGGAGTTCATTTCAGTCTAAGATCAAACTGGATCGAGGGTTGCGGTA
64 ATCCCCAATCTAAG-ATATGGAGTTCATTCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGCA
* * * ** *
26817645 GCAGGATCAACAGCACGTAGGGTGATCGGGCTGATCCCCGGCTTACGCATTCT
128 GCAGGATCAACAGCACGTAGGGGGACCGAGCCAATCCCCGACTTACGCATTCT
* *
26817698 ACCTCTCCGGACAGCTGAGCGCTCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGGACAGCTGAGCGC-CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* *
26817763 TCCCCAATCTAAG-TATGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAG
65 TCCCCAATCTAAGATATGGAGTTCATTCC-AGTCTAAGATCAAACCGGATCGAGGGTTGCGGCAG
* ** * * *
26817827 TAGGATCGGCAGCACGTAGGGGGGACCGAGCCAATCTCTGACTTGCGCATT-T
129 CAGGATCAACAGCACGTA-GGGGGACCGAGCCAATCCCCGACTTACGCATTCT
* * *
26817879 CGCCTCTCC-GACCGGCTGAGCGCC-CAACGCTCATTTCATGGGTTGGCTTAGGCATACG
1 -GCCTCTCCGGA-CAGCTGAGCGCCGC-ACGCTCGTTTCATGGGTTGACTTAGGCATACG
26817937 AAGTATATTC
Statistics
Matches: 205, Mismatches: 27, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
180 15 0.07
181 80 0.39
182 108 0.53
183 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (180 bp):
GCCTCTCCGGACAGCTGAGCGCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAATCTAAGATATGGAGTTCATTCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGCAGCA
GGATCAACAGCACGTAGGGGGACCGAGCCAATCCCCGACTTACGCATTCT
Found at i:26818150 original size:26 final size:26
Alignment explanation
Indices: 26818114--26818166 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
26818104 GTTGACTTAG
26818114 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCAGT-CCCAGTCTAA
26818140 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
26818166 G
1 G
26818167 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:26818251 original size:365 final size:366
Alignment explanation
Indices: 26817698--26818361 Score: 853
Period size: 366 Copynumber: 1.8 Consensus size: 366
26817688 TACGCATTCT
*
26817698 ACCTCTCCGGACAGCTGAGCGCTCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCA
1 ACCTCTCCGGACAGCTGAGCGCCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCA
* * * * * * *
26817763 TCCCCAATCTAAGTATGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGT
66 TCCCCAATCTAAGTACGGAGTTCAGTCCCAGTCTAAGATCAGACCGGATCGAGAGTTGCGACAGC
* * * * * * *
26817828 AGGATCGGCAGCACGTAGGGGGGACCGAGCCAATCTCTGACTTGCGCATTTCGCCTCTCCGACCG
131 AGGATCGACAGCACGTAAGAGGGACAGAGCCAATCCCCGACTTGCGCATTTCGCCTCTCCGACCA
* * *
26817893 GCTGAGCGC-C-CAACGCTCATTTCATGGGTTGGCTTAGGCATACGAAG-TATATTCCACGTCTA
196 GCTGAGCGCTCGC-ACGCCCATTTCATGGGTTGGCTTAGGCAAACGAAGCT-CATTCCACGTCTA
*
26817955 AGCCCTAGTCGGACCGAGGGTTGTGG-TAGCAGGACCGGTAGTGGGATCGACAGCACACAGAGGG
259 AGCCCCAGTCGGACCGAGGGTTGTGGCTA-CAGGACCGGTAGTGGGATCGACAGCACACAGAGGG
26818019 GGATCGGGCTAATCTCCGGTTTACGCATTATGCCTCTCTGGCTG
323 GGATCGGGCTAATCTCCGGTTTACGCATTATGCCTCTCTGGCTG
* * *
26818063 ACCTCTCC-GACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
1 ACCTCTCCGGAC-AGCTGAGCGCCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTC
* ** *
26818127 ATCCCCAGTCTAAGCATACGGAGTTCAGTCCCAGTCTAAGATTGGATCGGA-CTGAGAGTTGCGA
65 ATCCCCAATCTAAG--TACGGAGTTCAGTCCCAGTCTAAGATCAGACCGGATC-GAGAGTTGCGA
* *
26818191 CAGCAGGATCGACAGCACG-AAGAGGGATCAG-GCCGATCCCCGAC-TGTGCA-TTCTGCCTCTC
127 CAGCAGGATCGACAGCACGTAAGAGGGA-CAGAGCCAATCCCCGACTTGCGCATTTC-GCCTCTC
* * * * * * *
26818252 CGGCCAGCTGAGTGCTCGCACGCCCGTTTCGTGGGTTGGCTTAGGCAAAGGGAGCTCATTCCATG
190 CGACCAGCTGAGCGCTCGCACGCCCATTTCATGGGTTGGCTTAGGCAAACGAAGCTCATTCCACG
*
26818317 TCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTACGGGACCGGTAG
255 TCTAAGCCCCAGTCGGACCGAGGGTTGTGGCTACAGGACCGGTAG
26818362 CACGCAAAGG
Statistics
Matches: 253, Mismatches: 36, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
364 6 0.02
365 93 0.37
366 94 0.37
367 60 0.24
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (366 bp):
ACCTCTCCGGACAGCTGAGCGCCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCA
TCCCCAATCTAAGTACGGAGTTCAGTCCCAGTCTAAGATCAGACCGGATCGAGAGTTGCGACAGC
AGGATCGACAGCACGTAAGAGGGACAGAGCCAATCCCCGACTTGCGCATTTCGCCTCTCCGACCA
GCTGAGCGCTCGCACGCCCATTTCATGGGTTGGCTTAGGCAAACGAAGCTCATTCCACGTCTAAG
CCCCAGTCGGACCGAGGGTTGTGGCTACAGGACCGGTAGTGGGATCGACAGCACACAGAGGGGGA
TCGGGCTAATCTCCGGTTTACGCATTATGCCTCTCTGGCTG
Found at i:26818271 original size:547 final size:547
Alignment explanation
Indices: 26817127--26818298 Score: 1441
Period size: 547 Copynumber: 2.1 Consensus size: 547
26817117 ACCACCCGTT
* * * * * * * *
26817127 CGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAACGCCCGCATGCTCGTTTCATGGGT
1 CGATCCCCGGC-TGTGCATTCTGCCTCTCCGGACAGCTGAGCGCTCGCACGCTCGTTTCATGGGT
* *
26817192 TGACTTAGGCCTACAGAGTTCATCACCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCA
65 TGACTTAGGCATACAGAGTTCATCACCAATCTAAG-ATACGGAGTTCATTCCTAGTCTAAGATCA
* *
26817257 GATCGGATCGAGGGTTGCGGCAGCTGGATCGACAGCACACAGGGGGACCGGACCGATCCCTAGCT
129 GACCGGATCGAGGGTTGCGGCAGCTGGATCGACAGCACACAGGGGGACCGGACCAATCCCTAGCT
* * *
26817322 TGCACATTCTGCCTCTCCAACCGAATGAGTGCCCGTACACTAGTTTCGGGGGTTGGCTTAGGCAT
194 TGCACATTCTGCCTCTCCAACCGAATGAGCGCCCGAACACTAGTTTCAGGGGTTGGCTTAGGCAT
*
26817387 ACGAAGTACATTCCACGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCGT
259 ACGAAGTACATTCCACGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCGG
** * * * *
26817452 GATCGACAGCACGTAGAGGGGGATCGGGCTGATCCTCGACTTGCACATTATGCCTTTCCGACCGG
324 GATCGACAGCACACAGAGGGGGATCGGGCTAATCCTCGACTTACACATTATGCCTCTCCGACCGA
*
26817517 CCTCTCCGGCCGACTGAGCGCCCGCACGATCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
389 CCTCTCCGACCGACTGAGCGCCCGCACGATCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* ** * **
26817582 CCCCAGTCTAAGCATATGGAGTTCATTTCAGTCTAAGATCAAACTGGATCGAGGGTTGCGGTAGC
454 CCCCAGTCTAAGCATACGGAGTTCATCCCAGTCTAAGATCAAACTGGATCGAGAGTTGCGACAGC
* *
26817647 AGGATCAACAGCACGTAGGGTGATCGGGC
519 AGGATCAACAGCACGAAGGGTGATCAGGC
* * *
26817676 TGATCCCCGGCT-TACGCATTCTACCTCTCCGGACAGCTGAGCGCTCGCACGCTCGTTTCATGAG
1 CGATCCCCGGCTGT--GCATTCTGCCTCTCCGGACAGCTGAGCGCTCGCACGCTCGTTTCATGGG
* * *
26817740 TTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG-TATGGAGTTCATTCCTAGTCTAAGATCA
64 TTGACTTAGGCATACAGAGTTCATCACCAATCTAAGATACGGAGTTCATTCCTAGTCTAAGATCA
* * ** *
26817804 GACCGGATCGAGGGTTGTGGCAG-TAGGATCGGCAGCACGTAGGGGGGACC-GAGCCAATCTCT-
129 GACCGGATCGAGGGTTGCGGCAGCT-GGATCGACAGCACACA-GGGGGACCGGA-CCAATCCCTA
* * ** * *
26817866 GACTTGCGCATT-TCGCCTCTCCGACCGGCTGAGCGCCC-AACGCTCA-TTTCATGGGTTGGCTT
191 G-CTTGCACATTCT-GCCTCTCCAACCGAATGAGCGCCCGAACACT-AGTTTCAGGGGTTGGCTT
* * ** * *
26817928 AGGCATACGAAGTATATTCCACGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGTAGCAGGACCGG
253 AGGCATACGAAGTACATTCCACGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCGA
* * ** *
26817993 TAGTGGGATCGACAGCACACAGAGGGGGATCGGGCTAAT-CTCCGGTTTACGCATTATGCCTCTC
318 CAGCGGGATCGACAGCACACAGAGGGGGATCGGGCTAATCCT-CGACTTACACATTATGCCTCTC
* * * * * * *
26818057 TGGCTGACCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
382 CGACCGACCTCTCCGACCGACTGAGCGCCCGCACGATCGTTTCATGGGTTGACTTAGGCATACGG
***
26818122 AGTTCATCCCCAGTCTAAGCATACGGAGTTCAGTCCCAGTCTAAGATTGGA-TCGGA-CTGAGAG
447 AGTTCATCCCCAGTCTAAGCATACGGAGTTCA-TCCCAGTCTAAGATCAAACT-GGATC-GAGAG
*
26818185 TTGCGACAGCAGGATCGACAGCACGAAGAGG-GATCAGGC
509 TTGCGACAGCAGGATCAACAGCACGAAG-GGTGATCAGGC
* * * * *
26818224 CGATCCCCGACTGTGCATTCTGCCTCTCCGGCCAGCTGAGTGCTCGCACGCCCGTTTCGTGGGTT
1 CGATCCCCGGCTGTGCATTCTGCCTCTCCGGACAGCTGAGCGCTCGCACGCTCGTTTCATGGGTT
*
26818289 GGCTTAGGCA
66 GACTTAGGCA
26818299 AAGGGAGCTC
Statistics
Matches: 530, Mismatches: 79, Indels: 30
0.83 0.12 0.05
Matches are distributed among these distances:
546 3 0.01
547 335 0.63
548 107 0.20
549 85 0.16
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (547 bp):
CGATCCCCGGCTGTGCATTCTGCCTCTCCGGACAGCTGAGCGCTCGCACGCTCGTTTCATGGGTT
GACTTAGGCATACAGAGTTCATCACCAATCTAAGATACGGAGTTCATTCCTAGTCTAAGATCAGA
CCGGATCGAGGGTTGCGGCAGCTGGATCGACAGCACACAGGGGGACCGGACCAATCCCTAGCTTG
CACATTCTGCCTCTCCAACCGAATGAGCGCCCGAACACTAGTTTCAGGGGTTGGCTTAGGCATAC
GAAGTACATTCCACGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGA
TCGACAGCACACAGAGGGGGATCGGGCTAATCCTCGACTTACACATTATGCCTCTCCGACCGACC
TCTCCGACCGACTGAGCGCCCGCACGATCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
CCAGTCTAAGCATACGGAGTTCATCCCAGTCTAAGATCAAACTGGATCGAGAGTTGCGACAGCAG
GATCAACAGCACGAAGGGTGATCAGGC
Found at i:26818662 original size:26 final size:26
Alignment explanation
Indices: 26818614--26818664 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
26818604 TGGCTTAGGT
* *
26818614 ATACGGAGTTCATTCCAAGTCTAAGC
1 ATACGGAGCTCATCCCAAGTCTAAGC
26818640 ATACGGAGCTCAATCCCAA-TCTAAG
1 ATACGGAGCTC-ATCCCAAGTCTAAG
26818665 ATTTTGAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (26 bp):
ATACGGAGCTCATCCCAAGTCTAAGC
Found at i:26820031 original size:26 final size:26
Alignment explanation
Indices: 26819979--26820031 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26819969 GTTTACTTAG
* * *
26819979 GCATACGGAGTTCATCCCTATTTTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
26820005 GCATACGAAGTTCATTCCC-AGTCTAA
1 GCATACGAAGTTCA-TCCCTAGTCTAA
26820031 G
1 G
26820032 ATCGGACCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:26820385 original size:26 final size:26
Alignment explanation
Indices: 26820349--26820399 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26820339 TGACTTAGGT
26820349 ATACAGAGTTCATCCCCAATCTAAGC
1 ATACAGAGTTCATCCCCAATCTAAGC
* *
26820375 ATACGGAGTTCATTCCCAATCTAAG
1 ATACAGAGTTCATCCCCAATCTAAG
26820400 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAATCTAAGC
Found at i:26820572 original size:695 final size:695
Alignment explanation
Indices: 26819273--26820586 Score: 1754
Period size: 695 Copynumber: 1.9 Consensus size: 695
26819263 TCGTTTCACA
* * *
26819273 GGTTGACTTAGGCATATGGAGTTCATCCCCAGTCGAAGCATACGGAGTTCATTCCCAGTTTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCGAAGCATACGAAGTTCATTCCCAGTCTAAGA
** * * * *
26819338 TCAGACCGGATTGAGGGTTGCGACAATAGGATCGGCAGCACGCAGGGGGGACCGAGCTGATCCCC
66 TCAGACCAAATCGAGGGTTGCGACAACAGGATCGACAGCACACAGGGGGGACCGAGCTGATCCCC
* * * *
26819403 AGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
131 AGCTTACGCATTCTACCTCTCCGACCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * * **
26819468 GCATACAAAGTACATTTCACGTCTAAGCCCTAGCCGGATCGAGGGTTGTGGCAGTAAGACTGGTA
196 GCATACAAAGTACATTCCACGTCTAAGCCCTAGCCGGACCGAGGGTTGCGACAGCAAGACCGACA
* * * * * * *
26819533 GCGGGATCGGCAGCATATAGAGGGGGATCGGGCTGATCCTCGGCTTATGCATTATGCCTCTCCGG
261 GCGGGATCAGCAGCACACAGAGGAGGATCAGGCTGATCCTCGGCTTACGCATTATGCCTCTCCGA
* * *
26819598 CCAGCCTCTTCGGCCGACTGAGCACCCGCATGCTCGTTTCATGGGTTGACTTTGGCATACAGAGT
326 CCAGCATCTTCGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGT
* * * * *
26819663 TCATCACCACTCTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATTGAGAGTTGCG
391 TCATCACCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGAGTTGCG
* ** * * ** *
26819728 GCTACAGGATCGGTAGCATGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC
456 GCAACAGGATCGACAGCACGCAGGAGGGATCGGGTCGATCCCCAACTTGCACATTCTGCCTCTCC
* * * *
26819793 GGTTGACTGAGCACCCGCACGTTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTTCACAT
521 GGTCGACTGAGCACCCGCACGTCCATTTCATGGGTTGGCTTAGGCATACGGAGTACACTCCACAT
26819858 CTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCATGCAGAGGGGGACCGGGCAGATCCCTCGCTT
586 CTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCATGCAGAGGGGGACCGGGCAGATCCCTCGCTT
26819923 ACGCATTATGCCTCTTCGGCTGGCTGAGTGCATGTTCGTTTCGTG
651 ACGCATTATGCCTCTTCGGCTGGCTGAGTGCATGTTCGTTTCGTG
* * * **
26819968 GGTTTACTTAGGCATACGGAGTTCATCCCTATTTTAAGCATACGAAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCGAAGCATACGAAGTTCATTCCCAGTCTAAGA
* * * *
26820033 TCGGACCAAATCGAGGGTTGCGGCAACAGGATCGACAGCACACAGGGGGGACCGAGTTGATCCCT
66 TCAGACCAAATCGAGGGTTGCGACAACAGGATCGACAGCACACAGGGGGGACCGAGCTGATCCCC
* * * * *
26820098 GGCTTACGCATTCTGCCTCTCCGACTGACTAAGTGCCTGCACGCTCGTTTCATGGGTTGGCTTAG
131 AGCTTACGCATTCTACCTCTCCGACCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
** * * * * *
26820163 GCATACGGAGTGCATTCCCCGTCTAAGCCCTAGTCGGACCGAGGGTTGCGATAGCAGGACCGACA
196 GCATACAAAGTACATTCCACGTCTAAGCCCTAGCCGGACCGAGGGTTGCGACAGCAAGACCGACA
*
26820228 GCGGGATCAGCAGCACGCAGAGGAGGA-CTAGGCTGATCCTCGGCTTACGCATTATGCCTCTCCG
261 GCGGGATCAGCAGCACACAGAGGAGGATC-AGGCTGATCCTCGGCTTACGCATTATGCCTCTCCG
* * ** * *
26820292 ATCGGCATCTTCGGCC-AGCTGAGCGGCCGCACGCTCGTTTTATGGGTTGACTTAGGTATACAGA
325 ACCAGCATCTTCGGCCGA-CTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGA
* *
26820356 GTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTG
389 GTTCATCACCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGAGTTG
** *
26820421 CGGCAACAGGATCGACAGCACGCAGGAGGGA-CAGTTTCGATCTCCAACTTGCACATTCTGCCTC
454 CGGCAACAGGATCGACAGCACGCAGGAGGGATC-GGGTCGATCCCCAACTTGCACATTCTGCCTC
* * * * * *
26820485 TCCGGTCGGCTGAGCGCCCGCATGTCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CACTCC
518 TCCGGTCGACTGAGCACCCGCACGTCCATTTCATGGGTTGGCTTAGGCATACGGAG-TACACTCC
** *
26820549 ATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCA
582 ACATCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCA
26820587 AGACCGGTAG
Statistics
Matches: 525, Mismatches: 90, Indels: 8
0.84 0.14 0.01
Matches are distributed among these distances:
694 3 0.01
695 521 0.99
696 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (695 bp):
GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCGAAGCATACGAAGTTCATTCCCAGTCTAAGA
TCAGACCAAATCGAGGGTTGCGACAACAGGATCGACAGCACACAGGGGGGACCGAGCTGATCCCC
AGCTTACGCATTCTACCTCTCCGACCGACTAAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAG
GCATACAAAGTACATTCCACGTCTAAGCCCTAGCCGGACCGAGGGTTGCGACAGCAAGACCGACA
GCGGGATCAGCAGCACACAGAGGAGGATCAGGCTGATCCTCGGCTTACGCATTATGCCTCTCCGA
CCAGCATCTTCGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGT
TCATCACCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGAGTTGCG
GCAACAGGATCGACAGCACGCAGGAGGGATCGGGTCGATCCCCAACTTGCACATTCTGCCTCTCC
GGTCGACTGAGCACCCGCACGTCCATTTCATGGGTTGGCTTAGGCATACGGAGTACACTCCACAT
CTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCATGCAGAGGGGGACCGGGCAGATCCCTCGCTT
ACGCATTATGCCTCTTCGGCTGGCTGAGTGCATGTTCGTTTCGTG
Found at i:26825458 original size:26 final size:26
Alignment explanation
Indices: 26825429--26825481 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26825419 GTTGACTTAG
* *
26825429 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTGTAA
*
26825455 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTGTAA
26825481 G
1 G
26825482 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTGTAA
Found at i:26825981 original size:26 final size:26
Alignment explanation
Indices: 26825930--26825982 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26825920 GTTAGCTTAG
* * *
26825930 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGCTCATTCCATGCCTAA
26825956 GCATACGAAGCTCATTCCCA-GCCTAA
1 GCATACGAAGCTCATT-CCATGCCTAA
26825982 G
1 G
26825983 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCATGCCTAA
Found at i:26826683 original size:26 final size:26
Alignment explanation
Indices: 26826653--26826705 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26826643 ATTGACTCAG
26826653 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26826679 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26826705 G
1 G
26826706 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26826866 original size:26 final size:26
Alignment explanation
Indices: 26826837--26826889 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26826827 GTTGGCTTAG
* * *
26826837 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGCTCATTCCAAGTCTAA
26826863 GCATACAGAGCTCATTCCAAGTCTAA
1 GCATACAGAGCTCATTCCAAGTCTAA
26826889 G
1 G
26826890 ATTTTGAGGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCAAGTCTAA
Found at i:26827514 original size:896 final size:900
Alignment explanation
Indices: 26825772--26827760 Score: 2923
Period size: 896 Copynumber: 2.2 Consensus size: 900
26825762 GTTGACTTAT
* * * * * *
26825772 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTACAGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTACGGCAGCAGGATCGGCA
* * * *
26825837 ACACGCAAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCGATTGAGCGCC
66 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
* *
26825902 CGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGC
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGC
* * * *
26825967 TCATTCCCAGCCTAAGATTTTGAGCCACGATGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
196 TCATTCCAAGCCTAAGATTTTGAGCCACGATGCACATGCTGGACTCGGGCATGTGCTAGTGCCAC
** * **
26826032 ATTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCGCCAGAGGGCCTAACCGGCGGTATTGGGGG
261 ATTTTTTTCACCCGGGGCACCATCGTC-G-G---CG-CAGA-GGCCTAACCGACGACATTGGGGG
** *
26826097 TTCCGGTGATTGGGAGGGCCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
319 TTCCGGCAATTGGGAGGGCCCGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCC
*
26826162 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
384 CTTATATTGGCCCCCTATCCCCCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
26826227 ATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGAT
449 ATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGAT
* * *
26826292 CACAAAATCTTCTCCACTTAAAGTTTTTGGCTGAATTTTTGTGTGCATGCGAACAAAAATACAAG
514 CACAAAATCTTCTCCAATTAAAGTTTTTAGCTGAATTTTTGTGTGCATGCCAACAAAAATACAAG
* * * *
26826357 GATCACCTCTACTAAATTTGGGGACAAAACACTTTCTAAAAAAATTTAAAAAAATCTCGAACCGC
579 GATCACCTCTACCAAATTTGGGGACAAAACACTTGCTAAAAAAATTTAAAAAAATCCCGAACAGC
*
26826422 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGG
644 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACACGAAGG
* * *
26826487 CTTAGGGGTCCATTGTACGAATATACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAG
709 CTTAGGCGACCATTGTACGAATATACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAG
* * *
26826552 ATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCAGCTTGCGCATCCTACCTCTCTAGTCGGC
774 ATGTGCTTGAACCAACCTACCACCCATTCGATCCCCAGCTTGCACATCCTACCTCTCTAGTCGGC
**
26826617 TGAGCGCCCGCACGCTTGTTTCATG-GATTGACTCAGGCATACGGAGTTCATCCCCAGTCTAA
839 TGAGCGCCCGCACGCTCATTTCATGAG-TTGACTCAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * * *
26826679 GCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGGTTGAGAGTTGCGGCAGCAGGGTCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTACGGCAGCAGGATCGGCA
* * *
26826744 GCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCC
66 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
* *
26826809 CGCACGCTCGTTCCGTGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC-AGAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGA-AG
* * * * *
26826873 CTCATTCCAAGTCTAAGATTTTGAGGCACGGTGCACATGTTGGACTCGGGCATGTGCTAGTGTCA
195 CTCATTCCAAGCCTAAGATTTTGAGCCACGATGCACATGCTGGACTCGGGCATGTGCTAGTGCCA
*
26826938 CATTTTTTTCACCCGGGGCACCATCGTC-G-G-AGA-GCCTAACCGACGACATTGGGGGTTTCGG
260 CATTTTTTTCACCCGGGGCACCATCGTCGGCGCAGAGGCCTAACCGACGACATTGGGGGTTCCGG
26826999 CAATTGGG-GGGCCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTAT
325 CAATTGGGAGGGCCC-GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTAT
26827063 ATTGGCCCCCTATCCCCCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
389 ATTGGCCCCCTATCCCCCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
26827128 ATAGGTTTGCTGTCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGATCACAA
454 ATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGATCACAA
** * * *
26827193 AATCTTCTCCAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGCAAAAATACAATGATCA
519 AATCTTCTCCAATTAAAGTTTTTAGCTGAATTTTTGTGTGCATGCCAACAAAAATACAAGGATCA
** ** *
26827258 CCTCTACCAAATTTGGGGACAAAA-ATCTTGCTAAAAATTTTTTTAAAAATCCCGAACAGTAAAA
584 CCTCTACCAAATTTGGGGACAAAACA-CTTGCTAAAAAAATTTAAAAAAATCCCGAACAGCAAAA
* *
26827322 AGTTTCCAAAATCATGAAAAATAGAAAACGGGTCTTCTTGCCATGAAACTTCACACGAAGGCTTA
648 AGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACACGAAGGCTTA
* * * *
26827387 GGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTTTGCAAAAATATGAAGATGT
713 GGCGACCATTGTACGAATATACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGT
** * *
26827452 GCTTGAACCAACCTACCACCCATTCGATCCCTGGCTTGCACATCCTGCCTCTCTGGTCGGCTGAG
778 GCTTGAACCAACCTACCACCCATTCGATCCCCAGCTTGCACATCCTACCTCTCTAGTCGGCTGAG
* *
26827517 CGCCCGCACGCTCATTTCCTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
843 CGCCCGCACGCTCATTTCATGAGTTGACTCAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * * * * *
26827575 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTTCGGCAGTAGCATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTACGGCAGCAGGATCGGCA
* * * * * * * *
26827640 GCACGTAGGGGGGTTCGGGTCTATCCCCGACTTGCGCATTCTACCTCTCCAGCCGGCTGAGCACC
66 GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
*
26827705 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGC
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
26827761 CCCAGTCAGA
Statistics
Matches: 968, Mismatches: 110, Indels: 19
0.88 0.10 0.02
Matches are distributed among these distances:
895 7 0.01
896 703 0.73
897 1 0.00
898 3 0.00
900 1 0.00
904 1 0.00
906 1 0.00
907 251 0.26
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTACGGCAGCAGGATCGGCA
GCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGC
TCATTCCAAGCCTAAGATTTTGAGCCACGATGCACATGCTGGACTCGGGCATGTGCTAGTGCCAC
ATTTTTTTCACCCGGGGCACCATCGTCGGCGCAGAGGCCTAACCGACGACATTGGGGGTTCCGGC
AATTGGGAGGGCCCGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCCCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAT
AGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGATCACAAAA
TCTTCTCCAATTAAAGTTTTTAGCTGAATTTTTGTGTGCATGCCAACAAAAATACAAGGATCACC
TCTACCAAATTTGGGGACAAAACACTTGCTAAAAAAATTTAAAAAAATCCCGAACAGCAAAAAGT
TTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACACGAAGGCTTAGGC
GACCATTGTACGAATATACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCT
TGAACCAACCTACCACCCATTCGATCCCCAGCTTGCACATCCTACCTCTCTAGTCGGCTGAGCGC
CCGCACGCTCATTTCATGAGTTGACTCAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:26827585 original size:26 final size:26
Alignment explanation
Indices: 26827549--26827601 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26827539 GTTGACTTAG
*
26827549 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
26827575 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26827601 G
1 G
26827602 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26827946 original size:26 final size:26
Alignment explanation
Indices: 26827916--26827968 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26827906 GTTGACTTAG
26827916 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26827942 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26827968 G
1 G
26827969 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26828250 original size:159 final size:157
Alignment explanation
Indices: 26827982--26828445 Score: 486
Period size: 159 Copynumber: 2.9 Consensus size: 157
26827972 GGATCGGACC
* * * * * *
26827982 GAGGGTTGCAGCAACAAGATCGACAGCACGTAGGGGGGA-CTGGGCTGATCCCTGGCTTACGCAT
1 GAGGGTTGCGGCAGCAGGACCGACAGCACGTAGGGGGGATC-GGGCTGATCCCCGGCTTGCGCAT
** * * * *
26828046 TCTGCCTTTTCGGCCGG-TTGAATGCCCGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAG
65 TCTGCCTTTTCGGCCGGCTT-AGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* *
26828110 CTCATTCCATGTCTAAGCCGCAACTAGACC
129 TTCATTCCATGTCTAAGCCG-AACTAGACA
* * * *
26828140 GAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAGGGGGATCGGGC-CAGTCCCCGGCTTGCGCA
1 GAGGGTTGCGGCAGCAGGACCGACAGCACGTAG-GGGGGATCGGGCTGA-TCCCCGGCTTGCGCA
* * * * *
26828204 TTATGCCTTTTCGGTCGGCTTAGCGCCCGTACGCTCGTTTCATGGGTTGACTTATGCATACGGAG
64 TTCTGCCTTTTCGGCCGGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* * *
26828269 TTCATTCCCA-GTCTAAGATCGAACTGGATA
129 TTCATT-CCATGTCTAAG-CCGAACTAGACA
* * *
26828299 GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGGATCGGGTTGATCCCCGGCTTGCGCAT
1 GAGGGTTGCGGCAGCAGGACCGACAGCACGTA-GGGGGGATCGGGCTGATCCCCGGCTTGCGCAT
* * * * * * * *
26828364 TCTGACTCTCCGGCCGACTGAGCACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGT
65 TCTGCCTTTTCGGCCGGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
*
26828429 TCTTTCCATGTCTAAGC
130 TCATTCCATGTCTAAGC
26828446 ATACGGAGCT
Statistics
Matches: 249, Mismatches: 48, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
158 30 0.12
159 209 0.84
160 10 0.04
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (157 bp):
GAGGGTTGCGGCAGCAGGACCGACAGCACGTAGGGGGGATCGGGCTGATCCCCGGCTTGCGCATT
CTGCCTTTTCGGCCGGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
CATTCCATGTCTAAGCCGAACTAGACA
Found at i:26829843 original size:368 final size:367
Alignment explanation
Indices: 26829214--26829990 Score: 1013
Period size: 368 Copynumber: 2.1 Consensus size: 367
26829204 CACACGTAGG
* ** * * *
26829214 GGGGGATCGGGCCGAACATCGGCTTGCGCATTCTACCTCTCCGGTCGACTAAGCGCCCGCACGCT
1 GGGGGATCGGGCCGATCCCCGGCTTGCGCATTTTACCTCTCCGGCCGACTAAGCACCCGCACGCT
* * *
26829279 CATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGCCGGACGGAGGG
66 CATATCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGCCAGACCGAGGG
* * * * *
26829344 TTGTGGCAATAGGACCGGCAACGGGATTGGCAGCACGTAGAGGGGGACCGGGCTGATCCCCGGCT
131 TTGTGGCAATAGGACCGGCAACGGGATCGACAGCACGCAGAGGGGGACCGAGCTGATCCCCGACT
* * ** *
26829409 TGCGTATAATGCCTCTCCGATCGGCCTCTCCAGCCAGCTGAGTGCCCGCACGCTTGTTTCGTGGG
196 TGCGCATAATGCCTCTCCGATCGACCTCTCCAGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGG
* * *
26829474 TTGATTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGCTT-ATTCACAGTCTAATAT
261 TTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAG-TTCATTCACAGTCTAAGAT
* *
26829538 CGAA-TCGGATCGAGGGTTGCGACACCAGGATCGACAGCACGCA
325 CGAACT-GAACCGAGGGTTGCGACACCAGGATCGACAGCACGCA
* * *
26829581 GAGGGGATCGGGCTGATCCCCGGCTTGCACATTTTGCCTCTCCGGCC-AGCTAAGCACCCGCACG
1 G-GGGGATCGGGCCGATCCCCGGCTTGCGCATTTTACCTCTCCGGCCGA-CTAAGCACCCGCACG
* * * *
26829645 CTCGTATCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGCCAGACCGAG
64 CTCATATCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGCCAGACCGAG
* * * **
26829710 GGTTGTGGCAGTAGGACCGGTAGCGGGATCGACAGCACGCAGAGGGGGATTGAGCTGATCCCCGA
129 GGTTGTGGCAATAGGACCGGCAACGGGATCGACAGCACGCAGAGGGGGACCGAGCTGATCCCCGA
* * * * *
26829775 CTTGTGCATTATGCCTCTCCGTTCGACCTCTCCAGCC-GACTGAGCACCCGCATGCTCGTTTTGT
194 CTTGCGCATAATGCCTCTCCGATCGACCTCTCCAGCCAG-CTGAGCACCCGCACGCTCGTTTCGT
* * * *
26829839 GGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAGGCATATGGAGTTCATTCCCAGTCTAAG
258 GGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCACAGTCTAAG
* **
26829904 ATCGGACTGAACCGAGGGTTGCGACAGTAGGATCGACAGCACGCA
323 ATCGAACTGAACCGAGGGTTGCGACACCAGGATCGACAGCACGCA
* * *
26829949 GGGTAGATCGGGCCGGTCCCCGGCTTGTGCATTTTACCTCTC
1 GGG-GGATCGGGCCGATCCCCGGCTTGCGCATTTTACCTCTC
26829991 TGACCGGTTG
Statistics
Matches: 350, Mismatches: 54, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
367 7 0.02
368 342 0.98
369 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (367 bp):
GGGGGATCGGGCCGATCCCCGGCTTGCGCATTTTACCTCTCCGGCCGACTAAGCACCCGCACGCT
CATATCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGCCAGACCGAGGG
TTGTGGCAATAGGACCGGCAACGGGATCGACAGCACGCAGAGGGGGACCGAGCTGATCCCCGACT
TGCGCATAATGCCTCTCCGATCGACCTCTCCAGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCACAGTCTAAGATC
GAACTGAACCGAGGGTTGCGACACCAGGATCGACAGCACGCA
Found at i:26829877 original size:26 final size:26
Alignment explanation
Indices: 26829848--26829901 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
26829838 TGGGTTGACT
26829848 TAGGCATACGAAGTTCATCCCCAGTC
1 TAGGCATACGAAGTTCATCCCCAGTC
* * *
26829874 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGAAGTTCATCCCCAGTC
26829900 TA
1 TA
26829902 AGATCGGACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATCCCCAGTC
Found at i:26830084 original size:368 final size:368
Alignment explanation
Indices: 26829218--26830101 Score: 972
Period size: 368 Copynumber: 2.4 Consensus size: 368
26829208 CGTAGGGGGG
* ** * * ** * * *
26829218 GATCGGGCCGAACATCGGCTTGCGCATTCTACCTCTCCGGTC-GACTAAGCGCCCGCACGCTCAT
1 GATCGGGCCGATCCCCGGCTTGCACATTTTACCTCTCCGACCAG-CTAAGCACCCGCACGCCCGT
* * * * * *
26829282 TTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGCCGGACGGAGGGTTG
65 ATCATGGGCTAGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGGACGGAGGGTTG
* * * * * *
26829347 TGGCAATAGGACCGGCAACGGGATTGGCAGCACGTAGAGGGGGACCGGGCTGATCCCCGGCTTGC
130 TGGCAGTAGGACCGGCAACGGGATCGACAGCACGCAGAGGGGGACCGAGCTGATCCCCGACTTGC
* * ** *
26829412 GTATAATGCCTCTCCGATCGGCCTCTCCAGCCAGCTGAGTGCCCGCACGCTTGTTTCGTGGGTTG
195 GCATAATGCCTCTCCGATCGACCTCTCCAGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTG
* * *
26829477 ATTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGCTTATTCACAGTCTAATATCGAA
260 ACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGCTTATTCACAGTCTAAGATCGAA
* * *
26829542 TCGGATCGAGGGTTGCGACACCAGGATCGACAGCACGCAGAGGG
325 TCGAACCGAGGGTTGCGACACCAGGATCGACAGCACGCAGAGGA
* * * *
26829586 GATCGGGCTGATCCCCGGCTTGCACATTTTGCCTCTCCGGCCAGCTAAGCACCCGCACGCTCGTA
1 GATCGGGCCGATCCCCGGCTTGCACATTTTACCTCTCCGACCAGCTAAGCACCCGCACGCCCGTA
* * * * * *
26829651 TCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGCCAGACCGAGGGTTGT
66 TCATGGGCTAGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGGACGGAGGGTTGT
* * ** *
26829716 GGCAGTAGGACCGGTAGCGGGATCGACAGCACGCAGAGGGGGATTGAGCTGATCCCCGACTTGTG
131 GGCAGTAGGACCGGCAACGGGATCGACAGCACGCAGAGGGGGACCGAGCTGATCCCCGACTTGCG
* * * *
26829781 CATTATGCCTCTCCGTTCGACCTCTCCAGCC-GACTGAGCACCCGCATGCTCGTTTTGTGGGTTG
196 CATAATGCCTCTCCGATCGACCTCTCCAGCCAG-CTGAGCACCCGCACGCTCGTTTCGTGGGTTG
* * * * *
26829845 ACTTAGGCATACGAAGTTCATCCCCAGTCTAGGCATATGGAG-TTCATTCCCAGTCTAAGATCGG
260 ACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGCTT-ATTCACAGTCTAAGATCGA
**
26829909 A-CTGAACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAG-GGTA
324 ATC-GAACCGAGGGTTGCGACACCAGGATCGACAGCACGCAGAGG-A
* ** * * * * ** * *
26829954 GATCGGGCCGGTCCCCGGCTTGTGCATTTTACCTCTCTGACCGGTTGAGTGCCCGTACGCCCGTT
1 GATCGGGCCGATCCCCGGCTTGCACATTTTACCTCTCCGACCAGCTAAGCACCCGCACGCCCGTA
* * * *
26830019 TCATGGGCTATCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGTCGGATCGGA-GGTT
66 TCATGGGCTAGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCCAGCCGGA-CGGAGGGTT
* *
26830082 GTGGTAGCAGGACCGGCAAC
129 GTGGCAGTAGGACCGGCAAC
26830102 ACGCAGAAGG
Statistics
Matches: 431, Mismatches: 78, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
367 6 0.01
368 420 0.97
369 5 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (368 bp):
GATCGGGCCGATCCCCGGCTTGCACATTTTACCTCTCCGACCAGCTAAGCACCCGCACGCCCGTA
TCATGGGCTAGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGGACGGAGGGTTGT
GGCAGTAGGACCGGCAACGGGATCGACAGCACGCAGAGGGGGACCGAGCTGATCCCCGACTTGCG
CATAATGCCTCTCCGATCGACCTCTCCAGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGCTTATTCACAGTCTAAGATCGAAT
CGAACCGAGGGTTGCGACACCAGGATCGACAGCACGCAGAGGA
Found at i:26831104 original size:25 final size:26
Alignment explanation
Indices: 26831053--26831104 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26831043 GCTGACTTAG
*
26831053 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
26831079 GCATACAGAGTTCAT-TCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26831104 G
1 G
26831105 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26831447 original size:26 final size:26
Alignment explanation
Indices: 26831418--26831470 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
26831408 ATTGACTTAG
26831418 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26831444 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26831470 G
1 G
26831471 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26831791 original size:26 final size:26
Alignment explanation
Indices: 26831761--26831813 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26831751 GTTCACTTAG
*
26831761 GCATACGGAGTTCATCCCTAATCTAA
1 GCATACGGAGTTCATCCCGAATCTAA
*
26831787 GCATACGGAGTTCATTCCGAATCTAA
1 GCATACGGAGTTCATCCCGAATCTAA
26831813 G
1 G
26831814 ATCTGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCGAATCTAA
Found at i:26831927 original size:184 final size:183
Alignment explanation
Indices: 26831731--26832155 Score: 523
Period size: 184 Copynumber: 2.3 Consensus size: 183
26831721 CAGCTCAGTG
* *
26831731 CCCGCACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATCCCTAATCTAAGCATACGGA
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGA
* * * * * *
26831796 GTTCATTCCGAATCTAAGATCTG-ATCGGATCGAGGGTTGCGGCAGCATGATCGGTATCACGCAG
66 GTTCATTCCGAATCTAAGAT-TGAACCAGATCGAGGGTTACGACAGCAGGATCGGTAGCACGCAG
*
26831860 GGGGGA-TAGAGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCA
130 GGGGGACT-G-GTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCA
* *
26831915 CCCGCACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGA
* * * * *
26831980 GTTCATTCCTAGTCTAAGATTGAACCAGATCGAGGGTTATGACAGTAGGATCGGTAGCACGTAGG
66 GTTCATTCCGAATCTAAGATTGAACCAGATCGAGGGTTACGACAGCAGGATCGGTAGCACGCAGG
* * * *** *
26832045 GGGGACTGGTCGATCCCCGGCTTACGTATTCTGCCTTTTCGGTGGGCTGAGCG
131 GGGGACTGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCA
* * * * * * *
26832098 CCTGCACACTCGTTTCGTGGGTTGGCTTAGGCACACGGAGTACA-CTCCACATCTAAGC
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-ATCTAAGC
26832156 CCTAGCCAGA
Statistics
Matches: 206, Mismatches: 32, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
182 4 0.02
183 83 0.40
184 118 0.57
185 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (183 bp):
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGA
GTTCATTCCGAATCTAAGATTGAACCAGATCGAGGGTTACGACAGCAGGATCGGTAGCACGCAGG
GGGGACTGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCA
Found at i:26831972 original size:26 final size:26
Alignment explanation
Indices: 26831942--26831997 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
26831932 TGGGTTGACT
26831942 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
* *
26831968 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
26831994 TAAG
1 TAAG
26831998 ATTGAACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:26832346 original size:26 final size:26
Alignment explanation
Indices: 26832312--26832364 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26832302 GTTGACTTAG
26832312 GCATACGGAGTTCATCCCCAGACTAA
1 GCATACGGAGTTCATCCCCAGACTAA
* *
26832338 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGACTAA
26832364 G
1 G
26832365 ATCAGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGACTAA
Found at i:26833763 original size:26 final size:26
Alignment explanation
Indices: 26833713--26833764 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
26833703 GTTGACTTAG
* *
26833713 GCATACTGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
**
26833739 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
26833765 AATCAGACTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:26835298 original size:26 final size:26
Alignment explanation
Indices: 26835268--26835320 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26835258 GTTGACTTAG
* *
26835268 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACCGAGTTAATCCCTAGTCTAA
*
26835294 GCATACCGAGTTAATTCCTAGTCTAA
1 GCATACCGAGTTAATCCCTAGTCTAA
26835320 G
1 G
26835321 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTAATCCCTAGTCTAA
Found at i:26835768 original size:374 final size:374
Alignment explanation
Indices: 26835074--26835780 Score: 875
Period size: 374 Copynumber: 1.9 Consensus size: 374
26835064 CGTTTCGTGG
* * *
26835074 GTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGCCAGACCGATGGTTGTGGTAGC
1 GTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGC
* * * * * *
26835139 AGGACCGGCAGCGAGATCGATAGCACGTAGAGGGGGACTGGGCTGATGCTCGACTTGCGCATTAT
66 AGGACCAGCAGCGAGATCGACAGCACGTAGAGAGGGACTGAGCTGATCCCCGACTTGCGCATTAT
* * * *
26835204 GCCTCTCCGACTGGCCTCTCCAGTCGACTGAGCGCCCGTACACTCATTTCATGGGTTGACTTAGG
131 GCCTCTCCGACTGACCTCTCCAGCCGACTGAGCACCCGCACACTCATTTCATGGGTTGACTTAGG
* * *
26835269 CATACGGAGTTCATCCCTAGTCTAAGCATACCGAGTTAATTCCTAGTCTAAGATCAGATCGGATC
196 CATACGGAGTTCATCCCTAGTCTAAGCACACCGAGTTAATTCCCAGTCTAAGATCAGACCGGATC
* * * * * *
26835334 GAGGGTTGCGGTAGCAAGATCGATATCACACAGGTGGGACCGGGTCAATCCCCAGCTTGCACATT
261 AAGGGTTGCGATAGCAAGACCGACAACACACAGGTGGGACCGGGCCAATCCCCAGCTTGCACATT
*
26835399 CTACCTCTTCGACCGACTGCACATTCTCCCCAGCTTGCACATTTCATCA
326 CGACCTCTTCGACCGACTGCACATTCTCCCCAGCTTGCACATTTCATCA
* * * *
26835448 GTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAACCTGACTGAGGGTTGTGGCAGC
1 GTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGC
* * * * *
26835513 AGGACCAGCAGCGGGATTGGCAGCATGTAGAGAGGGA-TCGAGCTGATCCCCGACTTGTGCATTA
66 AGGACCAGCAGCGAGATCGACAGCACGTAGAGAGGGACT-GAGCTGATCCCCGACTTGCGCATTA
* * * * * *
26835577 TGCCTCTCCGA-TCGACCTTTCCGGCCGGCTGAGCACCTGCACGCTCATTTCGTGGGTT-ATCTT
130 TGCCTCTCCGACT-GACCTCTCCAGCCGACTGAGCACCCGCACACTCATTTCATGGGTTGA-CTT
* * * *
26835640 AGGCATACGGAGTTCATCTCC-GGTCTAAGCACACGGAGTTCATTCCCAGTCTAAGATCGGACCG
193 AGGCATACGGAGTTCATC-CCTAGTCTAAGCACACCGAGTTAATTCCCAGTCTAAGATCAGACCG
* * ** * ** **
26835704 GATCAAGGGTTGCGATAGGAGGACCGACAACACGTAGG-GGGGCTCGGGCCGGTCCCTGGCTTGC
257 GATCAAGGGTTGCGATAGCAAGACCGACAACACACAGGTGGGAC-CGGGCCAATCCCCAGCTTGC
26835768 ACATTCGACCTCT
321 ACATTCGACCTCT
26835781 CCGGTCTGCT
Statistics
Matches: 277, Mismatches: 51, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
373 7 0.03
374 268 0.97
375 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (374 bp):
GTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGC
AGGACCAGCAGCGAGATCGACAGCACGTAGAGAGGGACTGAGCTGATCCCCGACTTGCGCATTAT
GCCTCTCCGACTGACCTCTCCAGCCGACTGAGCACCCGCACACTCATTTCATGGGTTGACTTAGG
CATACGGAGTTCATCCCTAGTCTAAGCACACCGAGTTAATTCCCAGTCTAAGATCAGACCGGATC
AAGGGTTGCGATAGCAAGACCGACAACACACAGGTGGGACCGGGCCAATCCCCAGCTTGCACATT
CGACCTCTTCGACCGACTGCACATTCTCCCCAGCTTGCACATTTCATCA
Found at i:26836141 original size:157 final size:156
Alignment explanation
Indices: 26835672--26836156 Score: 418
Period size: 159 Copynumber: 3.1 Consensus size: 156
26835662 GTCTAAGCAC
* * * * ** * *
26835672 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGATAGGAGGACCGACAACAC
1 ACGGAGTTCA-TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGACCGACAGCAC
* * * * * * * *
26835737 GTAGGGGGG-CTCGGGCCGGTCCCTGGCTTGCACATTC-GACCTCTCCGGTCTGCTGAACGCCCG
65 GTAGGGGGGAC-CGGGTC-ATCCCCGGCTTGCGCATTCTG-CCTCTACGGCCGGCTGAGCGCCCG
* * *
26835800 CACGCCCATTTCATGGGTTGGCTTAGGCAT
127 CACGCTCATTTCGTGGGTTGGCTTATGCAT
* * * ** * * * *
26835830 AGGGAGCTCATTCCATGTCTAAGCCCTAG-CCAGACCGAGGGTTGTGGCAGTGGGACCGGCAGAA
1 ACGGAGTTCATCCCA-GTCTAAGATC-AGACCAGACCGAGGGTTGCGGCAGTAGGACCGACAGCA
* * * * * * * * *
26835894 CGCAGAGGGGGATCGGGTTGATCCTCGGCTTACGCATTATGCCTCTTCGGCTGGCTCAGCGCCCG
64 CGTAG-GGGGGACCGGG-TCATCCCCGGCTTGCGCATTCTGCCTCTACGGCCGGCTGAGCGCCCG
** * *
26835959 CACGCTTGTTTCGTAGGTTGACTTATGCAT
127 CACGCTCATTTCGTGGGTTGGCTTATGCAT
* *
26835989 ACGGAGTTCATGCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAAGATCGACAGCAC
1 ACGGAGTTCAT-CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGACCGACAGCAC
* * * *
26836054 GTAGGGGGGACCAGGTCATCCCCGACTTGCGCATTCTGCCTCTACGACCGGCTGAGCACCCGCAC
65 GTAGGGGGGACCGGGTCATCCCCGGCTTGCGCATTCTGCCTCTACGGCCGGCTGAGCGCCCGCAC
*
26836119 ACTCATTTCGTGGGTTGGCTTATGCAT
130 GCTCATTTCGTGGGTTGGCTTATGCAT
**
26836146 ACCAAGTTCAT
1 ACGGAGTTCAT
26836157 TCAATGTCTA
Statistics
Matches: 248, Mismatches: 71, Indels: 17
0.74 0.21 0.05
Matches are distributed among these distances:
157 75 0.30
158 55 0.22
159 114 0.46
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
ACGGAGTTCATCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGACCGACAGCACG
TAGGGGGGACCGGGTCATCCCCGGCTTGCGCATTCTGCCTCTACGGCCGGCTGAGCGCCCGCACG
CTCATTTCGTGGGTTGGCTTATGCAT
Found at i:26836166 original size:157 final size:159
Alignment explanation
Indices: 26835796--26836168 Score: 385
Period size: 157 Copynumber: 2.4 Consensus size: 159
26835786 CTGCTGAACG
* * * * * *
26835796 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTAGCC
1 CCCGCACGCTCATTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCCATGTCTAAGACCTAGCC
* ** * * * * * *
26835861 AGACCGAGGGTTGTGGCAGTGGGACCGGCAGAACGCAGAGGGGGATCGGGTTGATCCTCGGCTTA
66 AGACCGAGGGTTGCGGCAGTAAGACCGACAGAACGCAGAGGGGGACCAGGTTCATCCCCGACTTA
* * * *
26835926 CGCATTATGCCTCTTCGGCTGGCTCAGCG
131 CGCATTATGCCTCTACGACCGGCTCAGCA
** * * * *
26835955 CCCGCACGCTTGTTTCGTAGGTTGACTTATGCATACGGAGTTCATGCCCA-GTCTAAGATC-AGA
1 CCCGCACGCTCATTTCGTGGGTTGGCTTATGCATACGGAGTTCAT-TCCATGTCTAAGACCTAG-
* * *
26836018 CCAGACCGAGGGTTGCGGCAGTAAGATCGACAGCACGTAG-GGGGGACCAGG-TCATCCCCGACT
64 CCAGACCGAGGGTTGCGGCAGTAAGACCGACAGAACGCAGAGGGGGACCAGGTTCATCCCCGACT
* * *
26836081 TGCGCATTCTGCCTCTACGACCGGCTGAGCA
129 TACGCATTATGCCTCTACGACCGGCTCAGCA
* ** *
26836112 CCCGCACACTCATTTCGTGGGTTGGCTTATGCATACCAAGTTCATTCAATGTCTAAG
1 CCCGCACGCTCATTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCCATGTCTAAG
26836169 CATACGGAGC
Statistics
Matches: 171, Mismatches: 40, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
156 2 0.01
157 78 0.46
158 11 0.06
159 77 0.45
160 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
CCCGCACGCTCATTTCGTGGGTTGGCTTATGCATACGGAGTTCATTCCATGTCTAAGACCTAGCC
AGACCGAGGGTTGCGGCAGTAAGACCGACAGAACGCAGAGGGGGACCAGGTTCATCCCCGACTTA
CGCATTATGCCTCTACGACCGGCTCAGCA
Found at i:26837611 original size:733 final size:733
Alignment explanation
Indices: 26836079--26837651 Score: 2344
Period size: 733 Copynumber: 2.1 Consensus size: 733
26836069 TCATCCCCGA
* ** * * * *
26836079 CTTGCGCATTCTGCCTCTAC-GACCGGCTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTATG
1 CTTGCGCATCCTGCCTCT-CTGGTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGG
** * * *
26836143 CATACCAAGTTCATTCAATGTCTAAGCATACGGAGCTCATTCCTAATCTAAGATTTTGAGCCACA
65 CATACGGAGTTCATTCCATGTCTAAGCATATGGAGCTCATTCCAAATCTAAGATTTTGAGCCACA
* *
26836208 ATGCACATGCTGGGCTCTAGCATGTGCTGGTGCCACATTTTTTTCGCTCGGGGCACCATCGTCGG
130 ATGCACATGCTGGGCTCGACCATGTGCTGGTGCCACATTTTTTTCGCTCGGGGCACCATCGTCGG
* * * * *
26836273 AGCATCGTTGGAGCATCGCCGGGGAGCCTAACCAGCGGCATTGGGGGTTCCGGCGTTTGGGAGGG
195 AGCATCGCTGGAGCATCGCCGGAGAGCCTAACCAGCGGCATTGGGAGTTCCGACGATTGGGAGGG
*
26836338 CCGGGGGGTGTGCACACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATC
260 CCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATC
* *
26836403 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTC
325 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTATAGGTTTGCTGCC
* * * * * *
26836468 AGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAAGGGTCATAAAATATTCTCCACTC
390 AGTAGCCATTAAAGTGTCTAAAATAGGGACAATTTTTTCAAACGATCACAAAAGATTCTCCACTA
* * *** *
26836533 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTTGTCTACCCAATTT
455 CGAGTTTTTAGCTGAATGTTTTGGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATTT
* ***
26836598 GGGGACAAAACTCTTTCTAAAAAAATTTAAAAAAATCTTGAACCACAAAAAGTTTCAAAAATCAT
520 GGAGACAAAACTCTTTCTAAAAAAATTTAAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCAT
26836663 GAAAAATAGAAAACGAGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATG
585 GAAAAATAGAAAACGAGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATG
* **
26836728 AATTTACAAGCCATAAAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCTTGAACCCACCTA
650 AATTTACAAGCCATAAAAATGACATTGGCACAGAAGAAATATGAAGATGTGCTTGAACCCACCTA
* *
26836793 CCACCCGTTCGATACCCGG
715 CCACCCATTCGATACCCAG
* * * * *
26836812 CTTGCGCATCCTGCCTCTCTGGTCGGCTGAGTGCCTGCACGCTCGTTTCGTGGGTGGGCTTAGGC
1 CTTGCGCATCCTGCCTCTCTGGTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
* **
26836877 ATACGGAGTTCATTCCATGCCTAAGCATATGGAGCTCATTCCAAATCTAAGATTTTGAGCCACGG
66 ATACGGAGTTCATTCCATGTCTAAGCATATGGAGCTCATTCCAAATCTAAGATTTTGAGCCACAA
* * *
26836942 TGCACATGCTGGGCTCGACCATGTGTTGGTGCCGCATTTTTTTCGC-CTGGGGCACCATCGTTGG
131 TGCACATGCTGGGCTCGACCATGTGCTGGTGCCACATTTTTTTCGCTC-GGGGCACCATCGTCGG
* * *
26837006 AGCATCGCTGGAGCATCGTCGGAGAGCCTAACCTGCGGCGTTGGGAGTTCCGACGATTGGG-GGG
195 AGCATCGCTGGAGCATCGCCGGAGAGCCTAACCAGCGGCATTGGGAGTTCCGACGATTGGGAGGG
* * **
26837070 TCCTGGGGTTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTAT
260 -CCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTAT
26837135 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTATAGGTTTGCTGC
324 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTATAGGTTTGCTGC
* *
26837200 CAGTAGCCATTAAAGTGTCTAAAATGGGGACAATTTTTTCAAACGATCACAAAAGCTTCTCCACT
389 CAGTAGCCATTAAAGTGTCTAAAATAGGGACAATTTTTTCAAACGATCACAAAAGATTCTCCACT
26837265 ACGAGTTTTTAGCTGAATGTTTTGGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATT
454 ACGAGTTTTTAGCTGAATGTTTTGGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATT
* ** **
26837330 TGGAGACAAAACTCTTTCTAAAAAAATTTAAAATAATCCCAAACCGTAAAAAGTTTTGAAAATCA
519 TGGAGACAAAACTCTTTCTAAAAAAATTTAAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCA
* * *
26837395 TGAAAAATAGAAAATGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTAT
584 TGAAAAATAGAAAACGAGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTAT
*
26837460 GAATTTACAAGCCATAAAAATGACATTGGCACAGCAGAAATATGAAGATGTGCTTGAACCCACCT
649 GAATTTACAAGCCATAAAAATGACATTGGCACAGAAGAAATATGAAGATGTGCTTGAACCCACCT
*
26837525 ACCACCCATTCGATCCCCAG
714 ACCACCCATTCGATACCCAG
* ** *
26837545 CTTGCGCATCCTGCTTCTCTGGTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTAACCTAGGC
1 CTTGCGCATCCTGCCTCTCTGGTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
* * * **
26837610 ATATGGAATTCATCCCCA-GTCTAAGCATATGGATTTCATTCC
66 ATACGGAGTTCAT-TCCATGTCTAAGCATATGGAGCTCATTCC
26837652 CAGTCTATGA
Statistics
Matches: 750, Mismatches: 86, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
732 5 0.01
733 742 0.99
734 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (733 bp):
CTTGCGCATCCTGCCTCTCTGGTCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCATATGGAGCTCATTCCAAATCTAAGATTTTGAGCCACAA
TGCACATGCTGGGCTCGACCATGTGCTGGTGCCACATTTTTTTCGCTCGGGGCACCATCGTCGGA
GCATCGCTGGAGCATCGCCGGAGAGCCTAACCAGCGGCATTGGGAGTTCCGACGATTGGGAGGGC
CGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCC
CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTATAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTAAAATAGGGACAATTTTTTCAAACGATCACAAAAGATTCTCCACTAC
GAGTTTTTAGCTGAATGTTTTGGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATTTG
GAGACAAAACTCTTTCTAAAAAAATTTAAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATG
AAAAATAGAAAACGAGTCATCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGACATTGGCACAGAAGAAATATGAAGATGTGCTTGAACCCACCTAC
CACCCATTCGATACCCAG
Found at i:26837647 original size:26 final size:26
Alignment explanation
Indices: 26837608--26837658 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26837598 GTTAACCTAG
26837608 GCATATGGAATTCATCCCCAGTCTAA
1 GCATATGGAATTCATCCCCAGTCTAA
* *
26837634 GCATATGGATTTCATTCCCAGTCTA
1 GCATATGGAATTCATCCCCAGTCTA
26837659 TGATCGAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
GCATATGGAATTCATCCCCAGTCTAA
Found at i:26838367 original size:26 final size:26
Alignment explanation
Indices: 26838338--26838390 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26838328 GTTCACTTAG
26838338 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26838364 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26838390 G
1 G
26838391 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26838735 original size:26 final size:26
Alignment explanation
Indices: 26838706--26838758 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26838696 GTTGACTTAG
26838706 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26838732 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26838758 G
1 G
26838759 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26838865 original size:368 final size:368
Alignment explanation
Indices: 26837568--26838917 Score: 1613
Period size: 363 Copynumber: 3.7 Consensus size: 368
26837558 CTTCTCTGGT
* * * * *
26837568 CGACTGAGCGCCCGCACGCTCATTTCGTGGGTTAACCTAGGCATATGGAATTCATCCCCAGTCTA
1 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * ** * * * *
26837633 AGCATATGGATTTCATTCCCAGTCTATGATC-GAACCATATCGAGGGTTACGATAGTAGGATCGA
66 AGCATATGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGACAGCAGGATCGA
* * * * * * * *
26837697 TAGCACGCAGGAGGGA-CTAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGTCGGCTAAGC
130 TAGCACGCAGGGGGGACCGAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGGCTGAGC
* * * **
26837761 GCCCGCATGCTCGTTTCATGGGTTGGCTGAGGCATACGGAGTACATTCCATATCTAAGCCTCAGT
195 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCTCAGT
* * * * *
26837826 CGCACTGAGGGTTGT-GCAACAGGA-TCGGTAGCGGGATCGGTTA-CATGCAGTGGAAGACCGGG
260 CGAACTGAGGGTTGTGGCATCAGGACT-GGTAGCGGGATCGG-TAGCATGCAGAGG-GGATCGGG
* * **
26837888 TTGATCCTCGACTTGCACATTATGCCTC-TCTGACCGACCTCTCCGAT
322 TTGATCCTCGGCTTGCACATTATGCCTCTTC-GACCGGCCTCTCCGGC
*
26837935 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTA
1 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
** * * ** * *
26838000 AGCATATGGAGTTCATTTGCAGTCTAAGATCAAATCGGATTGAGGGTTGCGGCAGCAGGATCGGT
66 AGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGAT
* * * *
26838065 TGCACGGAGGGGGGATCGA-GCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCG
131 AGCACGCAGGGGGGACCGAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCG
* * *
26838129 CCTGCACGCTTGTTTCGTGGGTTGGCTTAGGCATATGGAGTACATTCCACGTCTAAGCCTCAG-C
196 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCTCAGTC
* * * * *
26838193 TGGACCGAGGGTTGTGGTAGT-AGGACTGGTAGTGGGATCGGTAGCATGCTGAGGGGGATCGGGT
261 -GAACTGAGGGTTGTGGCA-TCAGGACTGGTAGCGGGATCGGTAGCATGCAGA-GGGGATCGGGT
* *
26838257 TGATCCTCGGCTTGTACATTATGCCTCTCCGACCGGCCTCTCCGGC
323 TGATCCTCGGCTTGCACATTATGCCTCTTCGACCGGCCTCTCCGGC
* * *
26838303 C-AGCTGAGCCCCCGTACG--C---TCGTGGGTTCACTTAGGCATACGGAGTTCATCCCCAGTCT
1 CGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
26838362 AAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGA
65 AAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGA
* * * * *
26838427 TAGCACGAAGGGGGAACC-AGGCCGATCCCCAGCTTGCACATTCTACCTCTTCGATCGGCTGAGT
130 TAGCACGCAGGGGGGACCGAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGGCTGAGC
26838491 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCC-CTAG
195 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCTC-AG
* * * *
26838555 TCGAACTGAGGGTTGTGGCATCAGGACTGATAACGGGATTGGCAGCATGCAGAGAGGGATCGGGT
259 TCGAACTGAGGGTTGTGGCATCAGGACTGGTAGCGGGATCGGTAGCATGCAGAG-GGGATCGGGT
* * * * * *
26838620 TGATCCTTGGCTTACGCATTATGCCCCTTCGACCGGCCTTTTCGGC
323 TGATCCTCGGCTTGCACATTATGCCTCTTCGACCGGCCTCTCCGGC
* *
26838666 CGACTAAGCGCCCGTACGCTCG-TTCTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
1 CGACTGAGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
* * * ** * *
26838730 AAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTAGCAGGATTGG
65 AAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGA
* * ** * *
26838795 TAGCACGCAGGGGGGACCGA-GCCTATCCCCATCTTGCGCATTCTGGCTCTCCGATCGACTGAGT
130 TAGCACGCAGGGGGGACCGAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGGCTGAGC
* * *
26838859 GCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
195 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGC
26838918 ATACGGAGCT
Statistics
Matches: 849, Mismatches: 112, Indels: 43
0.85 0.11 0.04
Matches are distributed among these distances:
362 4 0.00
363 310 0.37
364 2 0.00
365 1 0.00
366 2 0.00
367 235 0.28
368 290 0.34
369 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (368 bp):
CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGAT
AGCACGCAGGGGGGACCGAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCTCAGTC
GAACTGAGGGTTGTGGCATCAGGACTGGTAGCGGGATCGGTAGCATGCAGAGGGGATCGGGTTGA
TCCTCGGCTTGCACATTATGCCTCTTCGACCGGCCTCTCCGGC
Found at i:26838940 original size:26 final size:26
Alignment explanation
Indices: 26838890--26838941 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26838880 GTTGGCTTAG
* *
26838890 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
26838916 GCATACGGAGCTCATTCACA-ATCTAA
1 GCATACGGAGCTCATTC-CATATCTAA
26838942 TATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:26839659 original size:26 final size:26
Alignment explanation
Indices: 26839623--26839675 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26839613 GTTGACTTAG
26839623 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26839649 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26839675 G
1 G
26839676 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26840034 original size:26 final size:26
Alignment explanation
Indices: 26839989--26840041 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26839979 GTTGACTTAG
*
26839989 GCATACGGAGTTCAACCCCATTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
**
26840015 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
26840041 G
1 G
26840042 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:26840298 original size:368 final size:366
Alignment explanation
Indices: 26839583--26840383 Score: 966
Period size: 368 Copynumber: 2.2 Consensus size: 366
26839573 CCTCTCCGAT
* * *
26839583 CGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAACCCCAGTCTA
** * * * *
26839648 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGTTGCGGTAGCAAGATCGGCA
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGTTGCGGCAGCAAGATCGACA
* * * ** * ** * *
26839713 GCACGCAGGGGGATCGAGCCGATCCTCGGCTTACGTATTTTGCCTCTCCAGTAGGCTGAGCGCCC
131 ACACGCAGGGGGACCGAGCCGATCCTCGACTTACACATTCTGCCTCTCCAACAGACTGAGCACCC
*
26839778 GCACGCTCATTTCATAGATTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGGA
196 GCACGCTCATTTCATAGATTGGCTTAGGCATACGGAGTACATTCCACGACTAAGCCCCAGCCGGA
** * * *
26839843 TCGGGGCTTGTGGAAGCAAGACCGGTAGTGGGATCGGCAGCACATAGAGAGGGACTGGGCTGATC
261 TCGGGGCTTGTGGAAGCAAGACCGACAGTGGGATCGACAGCACACAGAGAGGGACTAGGCTGATC
* * * *
26839908 CCCTGTTTATGCATTTTGCCTCTCTGA-CTGGCCTCTCTAGC
326 CCCTGCTTACGCATTATGCCTCTCCGATC-GGCCTCTCTAGC
* * * * *
26839949 GGGCTGAGTGCCCACACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCAACCCCATTCTA
1 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAACCCCAGTCTA
26840014 AGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGCAGCAAGATCGAC
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGA-GGTTGCGGCAGCAAGATCGAC
* * *
26840079 AACACGCAGGGGGGACCTG-GCTGATCGC-CGACTTGCACATTCTGCCTCTCCAACCGACTGAGC
130 AACACGCA-GGGGGACC-GAGCCGATC-CTCGACTTACACATTCTGCCTCTCCAACAGACTGAGC
* * * * * *
26840142 ACCCGCACGCTCATTTCGTGGGTTGGCTTAGGTATACGGAGTACATTCCATGACTAAGCCCTAGC
192 ACCCGCACGCTCATTTCATAGATTGGCTTAGGCATACGGAGTACATTCCACGACTAAGCCCCAGC
* * ** * *
26840207 TGGATCGAGGG-TTGTGGTAGCGGGACCGACAGTGGGATCGATAGCACGCAGA-AGGGGACTAGG
257 CGGATCG-GGGCTTGTGGAAGCAAGACCGACAGTGGGATCGACAGCACACAGAGA-GGGACTAGG
* * *
26840270 TTGAT-CCCTGACTTGCGCATTATGCCTCTCCGATCGGCCTCTCTGGC
320 CTGATCCCCTG-CTTACGCATTATGCCTCTCCGATCGGCCTCTCTAGC
* * * * **
26840317 CGGCTGAGCGTCCGCACACTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAACCCCAGTCTA
26840382 AG
66 AG
26840384 ATCAAACCAG
Statistics
Matches: 364, Mismatches: 63, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
366 96 0.26
367 32 0.09
368 230 0.63
369 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (366 bp):
CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAACCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGTTGCGGCAGCAAGATCGACA
ACACGCAGGGGGACCGAGCCGATCCTCGACTTACACATTCTGCCTCTCCAACAGACTGAGCACCC
GCACGCTCATTTCATAGATTGGCTTAGGCATACGGAGTACATTCCACGACTAAGCCCCAGCCGGA
TCGGGGCTTGTGGAAGCAAGACCGACAGTGGGATCGACAGCACACAGAGAGGGACTAGGCTGATC
CCCTGCTTACGCATTATGCCTCTCCGATCGGCCTCTCTAGC
Found at i:26840858 original size:159 final size:159
Alignment explanation
Indices: 26840317--26840859 Score: 500
Period size: 159 Copynumber: 3.4 Consensus size: 159
26840307 CCTCTCTGGC
* ** * * * *
26840317 CGGCTGAGCGTCCGCACACTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTA
1 CGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * * * *
26840382 AGATCAAACCAGACCGAGGGTTGCAACAACAGGATTGATAGCACGCA-GGAGAGACCGGGTCAAT
66 AGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGAGGGACCGGGTCGAT
* * *
26840446 CCCCGGCTAGCGCATTCTGCCTCTCCGAC
131 CCCCGACTTGCGCATTCTGCCTCTCCGAT
* * * * * *
26840475 CGGCTGGGCGCCCACACGTCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATT-CCATGTCT
1 CGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCT
** * * ** * * * * * * * *
26840539 AAGCCCCAGCTGGACCAAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGAGGGACCGGGCCGA
65 AAGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGAGGGACCGGGTCGA
* * *
26840604 TCCCC-AGCTTGCGCATTGTGCCTCTTCGGT
130 TCCCCGA-CTTGCGCATTCTGCCTCTCCGAT
* * * * * * *
26840634 CGGCTCAACGCCTGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAATCTA
1 CGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * * * * *
26840699 AGATCGGACCAGACCGAGGGTTACGGTAGTAGGATCGACAACATGCAGGGGGGGACCGGGTCGAT
66 AGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGAGGGACCGGGTCGAT
*
26840764 CCCCGACTTGCACATTCTGCCTCTCCGAT
131 CCCCGACTTGCGCATTCTGCCTCTCCGAT
* * *
26840793 CGGCTGAGCGCCCGTATGTTCGTTTCGTGGCTTGGCTTAGGCATACGGAGTTCATT-CCATGTCT
1 CGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCT
26840857 AAG
65 AAG
26840860 CATAAGGAGC
Statistics
Matches: 294, Mismatches: 85, Indels: 11
0.75 0.22 0.03
Matches are distributed among these distances:
157 3 0.01
158 84 0.29
159 203 0.69
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (159 bp):
CGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
AGATCAAACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGAGGGACCGGGTCGAT
CCCCGACTTGCGCATTCTGCCTCTCCGAT
Found at i:26841946 original size:26 final size:26
Alignment explanation
Indices: 26841916--26841968 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26841906 GTTGGCTTAG
*
26841916 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26841942 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26841968 G
1 G
26841969 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26843213 original size:26 final size:26
Alignment explanation
Indices: 26843183--26843235 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26843173 GTTGGCTTAG
*
26843183 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26843209 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26843235 G
1 G
26843236 ATCGGATCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26844532 original size:368 final size:363
Alignment explanation
Indices: 26843823--26845134 Score: 1381
Period size: 368 Copynumber: 3.6 Consensus size: 363
26843813 ACCCGGACGT
* * * *
26843823 TCGTTTCGTGGGTTGAATTAGGCATACAGAGTTCATCCCTAGTCAAAGCATACGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * * *
26843888 CAGTCTAAGATCGGACCGGATTGAAGCTTAC-GACAGTAAGATCGACAGCACGCAGGGGGGATCG
66 CAGTCTAAGATCAGACCGGATCGAGGGTTGCAG-CACTAAGATCGACAGCACGCAGGGGGGACCG
* * * *
26843952 GGTCGATCCTCGGCTT--GCATTCTGCCTCTCTAGTCGGTTGAGCGCCCGCACGCTCGTTTCGTG
130 GGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTG
** * *
26844015 GGTTGGCTTAGGCATACGGTCTACATTCCACGTCTAAGCCCCAGCCGGATCGAGGGTTATGGTAG
195 GGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCAGAT-GAGGGTTGTGGTAG
* * * * *
26844080 CAGGACC-GACAGTGGGATCGACAGCATGCAG-AGGTGGATCGAGCTGATCCCTAGCTTGCGCAT
259 CTGGACCAG-CAGCGGGATTGACAGCACGCAGAAGG-GGATCGGGCTGATCCC-AGCTTGCGCAT
* *
26844143 TATGCCTCTTCGG-CTGGCCTCTCTGACCGACTGTACACCTGCATGC
321 TATGCCTCTCCGGTC-GGCCTCTCTGACCG-CTG-AC-CCTGCACGC
* * * *
26844189 TCGTTTCATGGGTTGACTTAGGCACACGGAGTTCATCCCCAGTCTAAGCGTACGGAGTTCATTTC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
* * * ** *
26844254 CATTCTAAGATCAGACCAGATTGAGGGTTGTGGCTACT-GGATC-AGCAGCACGCAGGGGGGACC
66 CAGTCTAAGATCAGACCGGATCGAGGGTTGCAGC-ACTAAGATCGA-CAGCACGCAGGGGGGACC
* * * * * * ** *
26844317 GGGCCGGTACACGGCTTGCGCATTTTACCTTTCTGG-CTGGCTGAGCATCCGCACGCTCGTTTCG
129 GGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGTC-GGCTGAGCGCCCGCACGCTCATTTCG
* * *
26844381 TGGGTTGGCTTAGGCATATGGAGTACATTTCACGTCTAAGCCCCAACCAGACTGAGGGTTGTGGT
193 TGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCAGA-TGAGGGTTGTGGT
* * * * *
26844446 AGCTGGACCAGTAGCAGGATTGCCAGCACACAGAAGGGGATCGGGATGATCCTCAGCTTGCGCAT
257 AGCTGGACCAGCAGCGGGATTGACAGCACGCAGAAGGGGATCGGGCTGATCC-CAGCTTGCGCAT
* **
26844511 TATGCCTCTCCGGTCGGCCTCTCT-AGCCGGTTGAGCGCCCACACGC
321 TATGCCTCTCCGGTCGGCCTCTCTGA-CC-GCTGA-C-CCTGCACGC
* * * * **
26844557 TCATTTCGTGGGTTGACTTCGACAGACGGAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * * *
26844622 CAGTCTAAGATAAGACCGGATCGGGGGTTGCAGCAATAGGATCGACAGCACGTAGTGGGGACCAG
66 CAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCACTAAGATCGACAGCACGCAGGGGGGACCGG
* * * * *
26844687 GCCGATCCTCGGCTTGCTCATTTTGCTTCTCCGGTCGGTTGAGCGCCCGCACGCTCATTTCGTGG
131 GCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGG
* * * *
26844752 GTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGTCAGATCAGGGGTTGTGGTA-A
196 GTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCAGATGA-GGGTTGTGGTAGC
* * * * * * * *
26844816 TAAGACTAGCAACGGGATTGGCAGCACGCAGAGGGGGACCGGGCTGATCCCCAACTTGCGTATTA
260 T-GGACCAGCAGCGGGATTGACAGCACGCAGAAGGGGATCGGGCTGAT-CCCAGCTTGCGCATTA
* *
26844881 TGCCTCTCCGATC-G----ACTGA--GC-G--CCTGCACGC
323 TGCCTCTCCGGTCGGCCTCTCTGACCGCTGACCCTGCACGC
*
26844912 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTTC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
*
26844977 CAGTCTAAGATTAGACCGGATCGAGGGTTGCAGCAGC-AAGATCGACAGCACGCAGGGGGGACCG
66 CAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCA-CTAAGATCGACAGCACGCAGGGGGGACCG
* * * * * * * *
26845041 GGTCAATCCCCGCCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCTCGCACGCTCATTTCGTG
130 GGCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTG
*
26845106 GGTTGGCTTAGGCATACGGAGTTCATTCC
195 GGTTGGCTTAGGCATACGGAGTACATTCC
26845135 TTGTGTAAGC
Statistics
Matches: 789, Mismatches: 135, Indels: 55
0.81 0.14 0.06
Matches are distributed among these distances:
355 202 0.26
359 1 0.00
360 1 0.00
363 2 0.00
364 1 0.00
365 1 0.00
366 116 0.15
367 12 0.02
368 441 0.56
369 12 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (363 bp):
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCACTAAGATCGACAGCACGCAGGGGGGACCGG
GCCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGG
GTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCAGATGAGGGTTGTGGTAGCT
GGACCAGCAGCGGGATTGACAGCACGCAGAAGGGGATCGGGCTGATCCCAGCTTGCGCATTATGC
CTCTCCGGTCGGCCTCTCTGACCGCTGACCCTGCACGC
Found at i:26844754 original size:184 final size:179
Alignment explanation
Indices: 26844542--26845131 Score: 510
Period size: 184 Copynumber: 3.3 Consensus size: 179
26844532 TCTAGCCGGT
* * * *
26844542 TGAGCGCCCACACGCTCATTTCGTGGGTTGACTTCGACAGACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
26844607 TATAGAGTTCATTCCCAGTCTAAGATAAGACCGGATCGGGGGTTGCAGCAATAGGATCGACAGCA
66 TATAGAGTTCATTCCCAGTCTAAGATAAGACCGGATCGGGGGTTGCAGC-A-A-GATCGACAGCA
* * * * * * *
26844672 CGTAGTGGGGACCAGGCCGATCCTCGGCTTGCTCATTTTGCTTCTCCGGTCGGT
128 CG-AG-GGGGACCGGGCCGATCCCCGACTTGCTCATTATGCCTCTCCGATCGGC
* * * *
26844726 TGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACAT-TCCACGTCTAAGC
1 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAG-
** ****** * * * * *
26844790 CCCAGTCAGA--TCAGGGGTTGTGGT-A-ATAAGACTAGCAAC-GGGATTG--GC-AG--C-AC-
64 CATA-T-AGAGTTCATTCCCAGT-CTAAGATAAGAC-CGGATCGGGGGTTGCAGCAAGATCGACA
* * *
26844843 GCA-GAGGGGGACCGGGCTGATCCCCAACTTGCGT-ATTATGCCTCTCCGATCGAC
125 GCACGAGGGGGACCGGGCCGATCCCCGACTTGC-TCATTATGCCTCTCCGATCGGC
* *
26844897 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
** * * *
26844962 TACGGAGTTCATTTCCAGTCTAAGATTAGACCGGATCGAGGGTTGCAGCAGCAAGATCGACAGCA
66 TATAGAGTTCATTCCCAGTCTAAGATAAGACCGGATCGGGGGTT---GCAGCAAGATCGACAGCA
* * * *
26845027 CGCAGGGGGGACCGGGTCAATCCCCGCCTTG-TGCATTCTGCCTCTCCGATCGGC
128 CG-A-GGGGGACCGGGCCGATCCCCGACTTGCT-CATTATGCCTCTCCGATCGGC
* *
26845081 TGAGCGCTCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
1 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
26845132 TCCTTGTGTA
Statistics
Matches: 313, Mismatches: 65, Indels: 56
0.72 0.15 0.13
Matches are distributed among these distances:
168 2 0.01
169 1 0.00
170 11 0.04
171 99 0.32
172 6 0.02
173 1 0.00
174 4 0.01
175 2 0.01
176 3 0.01
177 2 0.01
178 1 0.00
179 2 0.01
180 2 0.01
181 3 0.01
182 4 0.01
183 4 0.01
184 150 0.48
185 11 0.04
186 2 0.01
187 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (179 bp):
TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
TATAGAGTTCATTCCCAGTCTAAGATAAGACCGGATCGGGGGTTGCAGCAAGATCGACAGCACGA
GGGGGACCGGGCCGATCCCCGACTTGCTCATTATGCCTCTCCGATCGGC
Found at i:26844969 original size:26 final size:26
Alignment explanation
Indices: 26844933--26844985 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26844923 GTTGACTTAG
26844933 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
26844959 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26844985 G
1 G
26844986 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26845170 original size:184 final size:185
Alignment explanation
Indices: 26844837--26845172 Score: 480
Period size: 184 Copynumber: 1.8 Consensus size: 185
26844827 ACGGGATTGG
* *
26844837 CAGCACGCAGAGGGGGACCGGGCTGATCCCCAACTTGCGTATTATGCCTCTCCGATCGACTGAGC
1 CAGCACGCAGAGGGGGACCGGGCTAATCCCCAACTTGCGCATTATGCCTCTCCGATCGACTGAGC
*
26844902 GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
66 GCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
* * * *
26844967 AGTTCATTTCCAGTCTAAGATTAGACCGGATCGAGGGTTGCAGCAGCAAGATCGA
131 AGCTAATTCCCAATCTAAGATTAGACCGGATCGAGGGTTGCAGCAGCAAGATCGA
** * * *
26845022 CAGCACGCAG-GGGGGACCGGG-TCAATCCCCGCCTTGTGCATTCTGCCTCTCCGATCGGCTGAG
1 CAGCACGCAGAGGGGGACCGGGCT-AATCCCCAACTTGCGCATTATGCCTCTCCGATCGACTGAG
* * ** *
26845085 CG-CTCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTGTAAGCATAC
65 CGCCT-GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
26845149 GGAGCTAATTCCCAATCTAAGATT
129 GGAGCTAATTCCCAATCTAAGATT
26845173 TTGAACCACA
Statistics
Matches: 132, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
183 3 0.02
184 119 0.90
185 10 0.08
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (185 bp):
CAGCACGCAGAGGGGGACCGGGCTAATCCCCAACTTGCGCATTATGCCTCTCCGATCGACTGAGC
GCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
AGCTAATTCCCAATCTAAGATTAGACCGGATCGAGGGTTGCAGCAGCAAGATCGA
Found at i:26846217 original size:26 final size:26
Alignment explanation
Indices: 26846181--26846233 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26846171 GTTGACTTAG
26846181 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26846207 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26846233 G
1 G
26846234 ATCTAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26846528 original size:159 final size:159
Alignment explanation
Indices: 26846331--26846710 Score: 365
Period size: 159 Copynumber: 2.4 Consensus size: 159
26846321 CGGTCGGCTG
* * * ** * * * *
26846331 AGCGCCCGCATGCCCGTTTCATTAGTTGCCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCC
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
* * ** * * * *
26846396 AG-CCAGACTGAGGGTTTTGGCAGCAGGACCGGTAGCATGCAGAGTGGGATCGGGTCGATCCCTG
66 AGACCAGACCGAGGGTTATGGCAGCAGGACCGACAGCATACAGAGGGGGA-CAGGTCGATCCCCG
* *
26846460 GCTTGCACATTATGCCTCTTCGGC-TAG-CTC
130 GCTTGCACATTATACCT-TTC-CCATAGACTC
* * * *
26846490 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-AT
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAC
* * * * * *
26846553 CGGATCGGACCGAGGGTTATGGCAGCAGGATCGACAGCATACAGGGGGGGACAGGTCTATCCCCG
65 CAGACCAGACCGAGGGTTATGGCAGCAGGACCGACAGCATACAGAGGGGGACAGGTCGATCCCCG
* * * *
26846618 GCTTGCGCATTCTACCTTTCCCATCGACTG
130 GCTTGCACATTATACCTTTCCCATAGACTC
* * *
26846648 AGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCGTTCCATGTCTAAGCA
1 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
26846711 TACGGAGCTC
Statistics
Matches: 176, Mismatches: 39, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
156 1 0.01
157 8 0.05
158 80 0.45
159 84 0.48
160 3 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
AGACCAGACCGAGGGTTATGGCAGCAGGACCGACAGCATACAGAGGGGGACAGGTCGATCCCCGG
CTTGCACATTATACCTTTCCCATAGACTC
Found at i:26847302 original size:26 final size:26
Alignment explanation
Indices: 26847266--26847318 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26847256 GTTGACTTGG
*
26847266 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26847292 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26847318 G
1 G
26847319 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26847516 original size:12 final size:12
Alignment explanation
Indices: 26847499--26847529 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
26847489 CGAGGGCTGT
26847499 GGCAGCAGGACC
1 GGCAGCAGGACC
*
26847511 GGCAGCAGGATC
1 GGCAGCAGGACC
26847523 GGCAGCA
1 GGCAGCA
26847530 TGCAGAGGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.29, G:0.42, T:0.03
Consensus pattern (12 bp):
GGCAGCAGGACC
Found at i:26847663 original size:26 final size:26
Alignment explanation
Indices: 26847633--26847685 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26847623 GTTGACATAG
26847633 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
26847659 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26847685 G
1 G
26847686 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26848004 original size:25 final size:25
Alignment explanation
Indices: 26847976--26848023 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26847966 GTTGACTTAG
26847976 GCATACAGAGTTCATCCCCAGTCAA
1 GCATACAGAGTTCATCCCCAGTCAA
** *
26848001 GCATATGGAGTTCATTCCCAGTC
1 GCATACAGAGTTCATCCCCAGTC
26848024 TAAGATCAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCCAGTCAA
Found at i:26848379 original size:26 final size:26
Alignment explanation
Indices: 26848343--26848395 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26848333 GTTGAGTTAG
*
26848343 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
26848369 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26848395 G
1 G
26848396 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26848553 original size:710 final size:710
Alignment explanation
Indices: 26847193--26848627 Score: 1796
Period size: 710 Copynumber: 2.0 Consensus size: 710
26847183 ACCACCTGTT
* * * **
26847193 CGATGCCCGGCTTGCGCATCCTGCCTCTCTGGTCGATTGAGTGTCCGCACGCTCGTTTCGTGGGT
1 CGATGCCCGGCTTGCGCATCCTACCTCTCTGGTCGACTGAGTCTCCGCACGCTCAATTCGTGGGT
* * * *
26847258 TGACTTGGGCATACGGAGTTCATCCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
66 TGACTTAGGCATACAGAGTTCATCCCCAGTTCAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * *** *
26847323 GATCAGATCGAGGGTTACGGCAGTAGGATCGACAGCACGTAGGGGGGACTGGGTCGATCCCTGGC
131 GATCAGATCGAGGGTTACGGCAGCAAGATCGACAGCACGCAGGACAGACCGGGTCGATCCCTGGC
* * *
26847388 TTGCGCATTTTGCCTCTCCGACCGGCTGAGCTTCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCA
196 TTGCGCATTCTGCCTCTCCGACCGGCTGAGCCTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
* * *
26847453 TACGGAGTAAATTCCACATCTAATCCCCAGTCAGATCGAGGGCTGTGGCAGCAGGACCGGCAGCA
261 TACGGAGTAAATTCCACATCTAAGCCCCAGTCAGACCGAGGGCTGCGGCAGCAGGACCGGCAGCA
* * *
26847518 GGATCGGCAGCATGCAGAGGGGAACCAAGCTGATCCCCAACTTGCGCATTATGCCTCTCTGACCG
326 GGATCGGCAGCATACAGAGGGGAACCAAGCTGATCCCCAACTTACGCATTATGCCTCTCCGACCG
* * * * *
26847583 GTATCTTCGACGGTTGAGTGCCTGCACGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCAT
391 GCATCTCCGACGGCTGAGTGCCCGCACACTCGTTTCATGGGTTGACATAGGCATACGGAGTTCAT
* * * *
26847648 CCCCAGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGATCAGACCGGACCGAGGGATGTGGCCA
456 CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGATGTGGACA
* * * * * * *
26847713 CAGGATCGATAGTATGCAGAAGGGACCGCGCCGATCCCCGGTTTACGTATTCTGCCTCTCCAGCC
521 CAAGATAGACAGCATGCAGAAGGGACCGCGCCGATCCCCAGCTTACGCATTCTGCCTCTCCAGCC
* * *
26847778 TGTTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTTGGCATAGGGAGCTCATTCCATGTCTAA
586 TGCTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAA
* **
26847843 GCCCTAGCCGGACCAAGGGTTGTGGCAGCAGGACAGACAGCACGTAGAGGGGGACTGGGC
651 GCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGACAGACAGCACGTAGAGGGGGACCAGGC
* ** *
26847903 TGATGCCCGGCTTGCGCATCCTATGTCTCTGGTCGACTGAG-CTCTCGCATGCTCAATTCGTGGG
1 CGATGCCCGGCTTGCGCATCCTACCTCTCTGGTCGACTGAGTCTC-CGCACGCTCAATTCGTGGG
*
26847967 TTGACTTAGGCATACAGAGTTCATCCCCAG-TCAAGCATATGGAGTTCATTCCCAGTCTAAGATC
65 TTGACTTAGGCATACAGAGTTCATCCCCAGTTCAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
26848031 AGATCGGATCGAGGGTTGCGGCTGCAAGATCTG-CAGCACGCAGGACAGACCGGG-CTGAT-CCT
130 AGATCAGATCGAGGGTTACGGCAGCAAGATC-GACAGCACGCAGGACAGACCGGGTC-GATCCCT
* * * *
26848093 CGGCTTGTGCATTCTGTCTCTCCGACCGGCTGAGCACT-GGCATGCTCGTTTCGTGGGTTGGCTT
193 -GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC-CTCCGCACGCTCGTTTCGTGGGTTGGCTT
* * ** * * *
26848157 CGGCATACGGAGTACATTCCATGTCTAAGCCCTAGTCAGACCGAGGGTTGCGGCAGCAGGATCGG
256 AGGCATACGGAGTAAATTCCACATCTAAGCCCCAGTCAGACCGAGGGCTGCGGCAGCAGGACCGG
* * * * * * ** * **
26848222 CAGCGGGATCGGTAGCTTATAGAGGGGGATCGGGCTGATCCTCGGCTTACGCATTATGCCTCTCC
321 CAGCAGGATCGGCAGCATACAGAGGGGAACCAAGCTGATCCCCAACTTACGCATTATGCCTCTCC
* * * * **
26848287 GATCGGCCTCTCC-AGCTGGCTGAGTGCCCGTACACTCGTTTCGTGGGTTGAGTTAGGCATACGG
386 GACCGGCATCTCCGA-C-GGCTGAGTGCCCGCACACTCGTTTCATGGGTTGACATAGGCATACGG
26848351 AGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGG-T
449 AGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGAT
* ** *
26848415 -TGCGACAGCAAGATTAG-CAGCATGTAGGGGGGACCAG-GCCGATCCCCAGCTTGCGCATTCTG
514 GTG-GACA-CAAGA-TAGACAGCATGCAGAAGGGACC-GCGCCGATCCCCAGCTTACGCATTCTG
* * *
26848477 CCTCTCCAG-CTGACTGAGCGCCCGCATACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCA
575 CCTCTCCAGCCTG-CTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCA
* * * ** * *
26848541 TTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATTGGCATCACGTAGAGGGGG
639 TTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGACAGACAGCACGTAGAGGGGG
26848606 ACCAGGC
704 ACCAGGC
*
26848613 CGATCCCCGGCTTGC
1 CGATGCCCGGCTTGC
26848628 ACATTATGCC
Statistics
Matches: 614, Mismatches: 99, Indels: 24
0.83 0.13 0.03
Matches are distributed among these distances:
708 7 0.01
709 255 0.42
710 349 0.57
711 3 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (710 bp):
CGATGCCCGGCTTGCGCATCCTACCTCTCTGGTCGACTGAGTCTCCGCACGCTCAATTCGTGGGT
TGACTTAGGCATACAGAGTTCATCCCCAGTTCAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
GATCAGATCGAGGGTTACGGCAGCAAGATCGACAGCACGCAGGACAGACCGGGTCGATCCCTGGC
TTGCGCATTCTGCCTCTCCGACCGGCTGAGCCTCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCA
TACGGAGTAAATTCCACATCTAAGCCCCAGTCAGACCGAGGGCTGCGGCAGCAGGACCGGCAGCA
GGATCGGCAGCATACAGAGGGGAACCAAGCTGATCCCCAACTTACGCATTATGCCTCTCCGACCG
GCATCTCCGACGGCTGAGTGCCCGCACACTCGTTTCATGGGTTGACATAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGATGTGGACA
CAAGATAGACAGCATGCAGAAGGGACCGCGCCGATCCCCAGCTTACGCATTCTGCCTCTCCAGCC
TGCTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAA
GCCCCAGCCGGACCAAGGGTTGTGGCAGCAGGACAGACAGCACGTAGAGGGGGACCAGGC
Found at i:26848870 original size:158 final size:156
Alignment explanation
Indices: 26848369--26848860 Score: 511
Period size: 158 Copynumber: 3.1 Consensus size: 156
26848359 CCCAGTCTAA
* * * *
26848369 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCAAGATTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCGGCAGCAAGATGA-CA
* * * * * *
26848434 GCATGTAGGGGGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAGCTGACTGAGCGCC
64 GCACGTAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
* *
26848499 CGCATACCCGTTTCGTGGGTTGGCTTAG
129 CGCACACTCGTTTCGTGGGTTGGCTTAG
* * ** * * ** *
26848527 GCATAGGGAGCTCATT-CCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATTGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACGGACCGAGGGTTGCGGCAGCAAGA-TGAC
* * * * * * *
26848591 ATCACGTAGAGGGGGACCAGGCCGATCCCCGGCTTGCACATTATGCCTCTTTGGCCAGCTCAACG
63 AGCACGTAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCG
* * *
26848656 CCCGCACACTCGTTT-GATGGATTGACTTAT
127 CCCGCACACTCGTTTCG-TGGGTTGGCTTAG
* * **
26848686 GCATATGGAGTTCATTCCCAGTCTAAGATTAGACTGGACTAAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTGCGGCAGCAAGAT-GACA
* * * **
26848751 GCACGCAGGGGGGATCAGGTCGATCCTTGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
64 GCACGTAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
* *
26848816 GGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCACACTCGTTTCGTGGGTTGGCTTAG
26848844 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
26848861 TATGTCTAAG
Statistics
Matches: 264, Mismatches: 61, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 138 0.52
159 120 0.45
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGCGGCAGCAAGATGACAGC
ACGTAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCG
CACACTCGTTTCGTGGGTTGGCTTAG
Found at i:26849585 original size:25 final size:25
Alignment explanation
Indices: 26849551--26849602 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
26849541 GGTTTGACTT
26849551 AGCATACGGAGTTCA-CCCTAGTCTA
1 AGCATACGGAG-TCATCCCTAGTCTA
*
26849576 AGCATACGGAGTCATTCCTAGTCTA
1 AGCATACGGAGTCATCCCTAGTCTA
26849601 AG
1 AG
26849603 ATATGAACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 3 0.12
25 22 0.88
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (25 bp):
AGCATACGGAGTCATCCCTAGTCTA
Found at i:26849898 original size:26 final size:26
Alignment explanation
Indices: 26849869--26849922 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
26849859 GGGTTGACTT
*
26849869 AGCATAGGGAGTTCATCCCCAGTCTA
1 AGCATACGGAGTTCATCCCCAGTCTA
* *
26849895 AGCATACGGAGTTTATTCCCAGTCTA
1 AGCATACGGAGTTCATCCCCAGTCTA
26849921 AG
1 AG
26849923 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (26 bp):
AGCATACGGAGTTCATCCCCAGTCTA
Found at i:26850376 original size:158 final size:157
Alignment explanation
Indices: 26849896--26850397 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 157
26849886 CCCAGTCTAA
* * * * **
26849896 GCATACGGAGTTTATTCCCA-GTCTAAGATCAGACCAAACTGAGGGTTACGGCAGCAGGATCGGT
1 GCATACGGACTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGT
* * * *
26849960 AGCACGTAGGGGGGATCGAGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGTTGGCTGAGCAC
65 AGCACGTAGGGGGGATCG-GCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* *
26850025 CCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAC
* * ** * * *
26850054 GCATAGGGAGC-TCATTTCATGTCTAAGCCCCAG-CCAGATCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGA-CTTCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * * * * *
26850117 TAGCACGTAGAGGGGGACCGGGCTGATCCCCGACTTGTGCATTATGCCTCTTCGATCGGCTCAGT
64 TAGCACGTAG-GGGGGATC-GGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* * *
26850182 GCCCGCACGCTCGTTTCGTGGGTTGACTTAT
127 GCCCGCACGCTCGTTTCATGGGTTGGCTTAC
* * **
26850213 GCATACGGACTTCATTCC-TAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATTGAC
1 GCATACGGACTTCATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGT
* * * * *
26850277 AGCATGTAGGGGGGATCAGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGACTGAGCGC
65 AGCACGTAGGGGGGATC-GGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * ** *
26850342 CCACACACTTATTTCATAGGTTGGCTTAC
129 CCGCACGCTCGTTTCATGGGTTGGCTTAC
*
26850371 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGACTTCATTCCATGTCTAAG
26850398 CATACGGAGC
Statistics
Matches: 272, Mismatches: 63, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 145 0.53
159 124 0.46
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGACTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGTA
GCACGTAGGGGGGATCGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGGCTTAC
Found at i:26850401 original size:26 final size:26
Alignment explanation
Indices: 26850371--26850423 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26850361 GTTGGCTTAC
* *
26850371 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGCTCACTCCCA-GTCTAA
26850397 GCATACGGAGCTCACTCCCAGTCTAA
1 GCATACGGAGCTCACTCCCAGTCTAA
26850423 G
1 G
26850424 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCACTCCCAGTCTAA
Found at i:26851345 original size:183 final size:183
Alignment explanation
Indices: 26851022--26851415 Score: 482
Period size: 183 Copynumber: 2.2 Consensus size: 183
26851012 ACCACCCGTT
* * * * * *
26851022 CGATCCTCGACTTACGCATTCTGCCTCTCTGGTTGGCAGAGCACCCGCATGCTCGTTTCGTGGGT
1 CGATCCCCGACGTGCGCATTCTGCCTCTCCGGCTGGCAGAGCACCCGCATGCTCATTTCGTGGGT
*
26851087 TGACTTAGGCATACGGAGTCCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCG
66 TGACCTAGGCATACGGAGTCCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCG
* *
26851152 GACTGGATCGAGGGTTGCGACAGCAGAATCGACAGCACGCAGGGGGATCGAGC
131 GACCGGATCGAGGGTTGCGACAGCAGAATCGACAGCACGCAGGGGGACCGAGC
* ** * *
26851205 CGATCCCCGGCGTGCGCATTCTGCCTCTCCGGCTGGTTGAGCGCCTGCATGCTCATTTCGTGGGT
1 CGATCCCCGACGTGCGCATTCTGCCTCTCCGGCTGGCAGAGCACCCGCATGCTCATTTCGTGGGT
* * * * * ** *
26851270 TGACCTAGGCGTACGGAGTTCATCCTCAGTCTAATCCTACGGAGTTCATTCCCAGTCTAAGATTG
66 TGACCTAGGCATACGGAGTCCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCG
* * * * * ** * * *
26851335 GACCGGATCGAGGGTTGTGATAGTAGGATTGATTGTACGTAGGGGGACCGGGC
131 GACCGGATCGAGGGTTGCGACAGCAGAATCGACAGCACGCAGGGGGACCGAGC
* *
26851388 CGATCCCCGACTTGCGTATTCTGCCTCT
1 CGATCCCCGACGTGCGCATTCTGCCTCT
26851416 TCAGCCGGCT
Statistics
Matches: 176, Mismatches: 35, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
183 176 1.00
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.25
Consensus pattern (183 bp):
CGATCCCCGACGTGCGCATTCTGCCTCTCCGGCTGGCAGAGCACCCGCATGCTCATTTCGTGGGT
TGACCTAGGCATACGGAGTCCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCG
GACCGGATCGAGGGTTGCGACAGCAGAATCGACAGCACGCAGGGGGACCGAGC
Found at i:26851445 original size:183 final size:183
Alignment explanation
Indices: 26851077--26851465 Score: 445
Period size: 183 Copynumber: 2.1 Consensus size: 183
26851067 CGCATGCTCG
*
26851077 TTTCGTGGGTTGACTTAGGCATACGGAGTCCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAG
1 TTTCGTGGGTTGACCTAGGCATACGGAGTCCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAG
* *
26851142 TCTAAGATCGGACTGGATCGAGGGTTGCGACAGCAGAATCGACAGCACGCAGGGGGATCGAGCCG
66 TCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGAATCGACAGCACGCAGGGGGACCGAGCCG
* * * * * * * **
26851207 ATCCCCGGCGTGCGCATTCTGCCTCTCCGGCTGGTTGAGCGCCTGCATGCTCA
131 ATCCCCGACGTGCGCATTCTGCCTCTCCAGCCGGCTAAGCACCGGCACACTCA
* * * * * **
26851260 TTTCGTGGGTTGACCTAGGCGTACGGAGTTCATCCTCAGTCTAATCCTACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACCTAGGCATACGGAGTCCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAG
* * * * * * ** * * *
26851325 TCTAAGATTGGACCGGATCGAGGGTTGTGATAGTAGGATTGATTGTACGTAGGGGGACCGGGCCG
66 TCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGAATCGACAGCACGCAGGGGGACCGAGCCG
* * *
26851390 ATCCCCGACTTGCGTATTCTGCCTCTTCAGCCGGCTAAGCACCGGCACACTCA
131 ATCCCCGACGTGCGCATTCTGCCTCTCCAGCCGGCTAAGCACCGGCACACTCA
* * * *
26851443 TTTCATAGGTTGGCCTTGGCATA
1 TTTCGTGGGTTGACCTAGGCATA
26851466 TGGTGTACAT
Statistics
Matches: 168, Mismatches: 38, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
183 168 1.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (183 bp):
TTTCGTGGGTTGACCTAGGCATACGGAGTCCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAG
TCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGAATCGACAGCACGCAGGGGGACCGAGCCG
ATCCCCGACGTGCGCATTCTGCCTCTCCAGCCGGCTAAGCACCGGCACACTCA
Found at i:26851967 original size:368 final size:366
Alignment explanation
Indices: 26851227--26852246 Score: 1082
Period size: 368 Copynumber: 2.8 Consensus size: 366
26851217 TGCGCATTCT
* * * * * *
26851227 GCCTCTCCGGCTGGTTGAGCGCCTGCATGCTCATTTCGTGGGTTGACCTAGGCGTACGGAGTTCA
1 GCCTCTCCGGCTGGCTGAACGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * **
26851292 TCCTCAGTCTAATCCTACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGTGATA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCA
* * * * *
26851357 GTAGGATTGATTGTACGTAGGGGGACCGGGCCGATCCCCGACTTGCGTATTCTGCCTCTTCAGCC
131 GTAGGA-TGATAGCACGTAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCC
* * * * * *
26851422 GGCTAAGCACCGGCACA-CTCATTTCATAGGTTGGCCTT-GGCATATGGTGTACATTCCACATCT
195 GGCTGAGCGCCCGCA-AGCTCATTTCATGGGTTGG-CTTAGGCATACGGAGTACATTCCACATCT
* * * * * * * *
26851485 AAGCCCCCGTCAGACTAG-GGGTTGTAGTAGCAGGACCGGCAGCGGGATCGGCAGAATGCAGAGG
258 AAGCCCCAG-CCGAATCGAGGGTTGTGGTAGCAGGACCGACAGCGGGATCGACAGAACGCAGAGG
***
26851549 GGGACTGAGCTGATCCCCGACTTGTGCATTATGCCTCTCCAGCCG
322 GGGACTGAGCTGATCCCCGACTTACACATTATGCCTCTCCAGCCG
* * *
26851594 GCCTCTCCGGCTGGCTGAACGCCCACATGCTCATTTTATGGGTTGACTTAGGCATATGGAGTTCA
1 GCCTCTCCGGCTGGCTGAACGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
26851659 TCCCCCGTCTAAGCATACGGAGTTCATTCCTATTCTAAGATCGGACCGGATCGAGGGTTGCGGCA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCA
* * * ** ** *
26851724 GTAGGATCGGTAGCATGCAGGGCAAACTAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGC
131 GTAGGAT-GATAGCACGTAGGG-GGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGC
* * * * *
26851789 CGACTGAGCGCCCGCAAGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTACATGCCACATCTA
194 CGGCTGAGCGCCCGCAAGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTA
* * *
26851854 AGCCCCAGCCGAATCGAGGGTTGTGGTAGTAGGACCGACAGCGGGATTGACAGCACGCAGAGGGG
259 AGCCCCAGCCGAATCGAGGGTTGTGGTAGCAGGACCGACAGCGGGATCGACAGAACGCAGAGGGG
* * * * * *
26851919 GA-TCGGGCTGATCCCTGGCTTACACATTTTGCCTCTTCGGCCG
324 GACT-GAGCTGATCCCCGACTTACACATTATGCCTCTCCAGCCG
* * * ** *
26851962 GCCTCTCCGG-TCAGCT-AAGTGCCCGCACGCTTGTTTTGTGGGTTGACTTAAGCATACGGAGTT
1 GCCTCTCCGGCT-GGCTGAA-CGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTT
* * * * *
26852025 CATCTCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCAG
64 CATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGG
* * * *
26852090 CAGCAGGAATGACAGCACGTAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCTG
129 CAGTAGG-ATGATAGCACGTA-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCG
* * * * * **
26852155 GTCGGCTGAGCGCCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGT
192 GCCGGCTGAGCGCCCGCAAGCTCATTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCACAT
* * * *
26852219 TTAAGCCCCAGTCGGACCGAGGGTTGTG
256 CTAAGCCCCAGCCGAATCGAGGGTTGTG
26852247 CCAGCGGGAC
Statistics
Matches: 534, Mismatches: 108, Indels: 21
0.81 0.16 0.03
Matches are distributed among these distances:
366 1 0.00
367 139 0.26
368 388 0.73
369 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (366 bp):
GCCTCTCCGGCTGGCTGAACGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCA
GTAGGATGATAGCACGTAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCG
GCTGAGCGCCCGCAAGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAG
CCCCAGCCGAATCGAGGGTTGTGGTAGCAGGACCGACAGCGGGATCGACAGAACGCAGAGGGGGA
CTGAGCTGATCCCCGACTTACACATTATGCCTCTCCAGCCG
Found at i:26852050 original size:26 final size:26
Alignment explanation
Indices: 26852010--26852065 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
26852000 TGGGTTGACT
*
26852010 TAAGCATACGGAGTTCA-TCTCCAGTC
1 TAAGCATACGAAGTTCATTC-CCAGTC
26852036 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
26852062 TAAG
1 TAAG
26852066 ATCAGACCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 26 0.93
27 2 0.07
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:26852566 original size:26 final size:26
Alignment explanation
Indices: 26852514--26852567 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
26852504 GTTGGCTTAG
* *
26852514 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGCTCATTCCATGTCTAA
26852540 GCATACGGAGCTCATTCC-TAGTCTAA
1 GCATACGGAGCTCATTCCAT-GTCTAA
26852566 GC
1 GC
26852568 TTTTGAGCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATGTCTAA
Found at i:26853456 original size:26 final size:26
Alignment explanation
Indices: 26853420--26853472 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26853410 GTTGGCTTAG
26853420 GCATACGGAGTCCATTCC-ATGTCTAA
1 GCATACGGAGTCCATTCCTA-GTCTAA
*
26853446 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTCCATTCCTAGTCTAA
26853472 G
1 G
26853473 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCTAGTCTAA
Found at i:26853471 original size:184 final size:184
Alignment explanation
Indices: 26853163--26853630 Score: 475
Period size: 184 Copynumber: 2.5 Consensus size: 184
26853153 ACCACCCGTT
* * * * * * * * *
26853163 CGATCCCC-GACTTACGCATCCTGCCTCTCTGGTCGACTGGGCGCCCGTACGCTCGTTTCGTGGG
1 CGATCCCCAG-CTTGCGCATTCTACCTCTCCGCTCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * * * * * *
26853227 CTGACTTAGGTATACAGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCCTAGTCTAAGAT
65 TTGGCTTAGGCATACGGAGTCCAT-TCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGAT
* * * * *** * * *
26853291 CAGACCGGATCGAGAGTTGCGGTAGCAGGATC-GACAGCATGCAGGGGGGA-TCGGGT
129 CAGACCAGACCGAGAGCTACAACAGCAGGATCAG-CAGCACGCAGGGGGGACT-GAGC
* *
26853347 CGATCCCCAGTTTGCGCATTCTGCCTCTCCGACT-GGCTGAGCGCCCGCACGCTCGTTTCATGGG
1 CGATCCCCAGCTTGCGCATTCTACCTCTCCG-CTCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
26853411 TTGGCTTAGGCATACGGAGTCCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATC
65 TTGGCTTAGGCATACGGAGTCCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATC
* * *
26853476 GGACCAGACCGAGGGCTACAACAGCAGGATCAGCAGCACGTAGGGGGGACTGAGC
130 AGACCAGACCGAGAGCTACAACAGCAGGATCAGCAGCACGCAGGGGGGACTGAGC
** * * *
26853531 CGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGTGCCCGCATGC-CTGTTTCATGGG
1 CGATCCCCAGCTTGCGCATTCTACCTCTCCGCTCGGCTGAGCGCCCGCACGCTC-GTTTCATGGG
* *
26853595 TTGGCTTAGGCATA-GG-GGCTAATTCCATGTCTAAGC
65 TTGGCTTAGGCATACGGAGTC-CATTCCATGTCTAAGC
26853631 CCCAACCGGA
Statistics
Matches: 238, Mismatches: 38, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
182 2 0.01
183 22 0.09
184 210 0.88
185 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (184 bp):
CGATCCCCAGCTTGCGCATTCTACCTCTCCGCTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
TGGCTTAGGCATACGGAGTCCATTCCATGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCA
GACCAGACCGAGAGCTACAACAGCAGGATCAGCAGCACGCAGGGGGGACTGAGC
Found at i:26853840 original size:158 final size:156
Alignment explanation
Indices: 26853446--26853946 Score: 472
Period size: 158 Copynumber: 3.2 Consensus size: 156
26853436 CCATGTCTAA
* * *
26853446 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGACCAGACCGAGGGCTACAACAGCAGGATC-AG
1 GCATACGGACTTCATTCCAT-GTCTAAGATCGGACCAGACCGAGGGTTGCAACAG-AGGATCGA-
* *
26853509 CAGCACGTAGGGGGGACTGAGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGTG
63 CAGCACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGTG
*
26853574 CCCGCATGC-CTGTTTCATGGGTTGGCTTAG
128 -CCGCACGCTC-GTTTCATGGGTTGGCTTAG
* * * ** ** * * * *** * * *
26853604 GCATAGGGGC-TAATTCCATGTCTAAGCCCCAACCGGACTGAAGGTTGTGGCAGCGAGACCGGCA
1 GCATACGGACTTCATTCCATGTCTAAGATCGGACCAGACCGAGGGTTGCAACAGAG-GATCGACA
* * * * * * * ** *
26853668 GCACACAGAAGGGGACCGGGCCGATCCCTTGCTTGCGCATTATGCCTCTTCGACCGGCTCAGTGC
65 GCACGCAG-GGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGTGC
* * *
26853733 TCGCACGCTCATTTCATGGGTTGACTTAT
129 -CGCACGCTCGTTTCATGGGTTGGCTTAG
*
26853762 GCATACGGACTTCAGTCC-TAGTCTAAGATCGGACCAGACCGAGGGTTGCAACAGTAGGATCGAC
1 GCATACGGACTTCATTCCAT-GTCTAAGATCGGACCAGACCGAGGGTTGCAACAG-AGGATCGAC
* * * * * *
26853826 AGCATGCAGGGGGGACTGGGTCGATCCCCGGCCTGCGCATTCTACCTCTCCGGTCGGTTGAGCGC
64 AGCACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGTGC
*
26853891 CTGCACGCTCGTTTCGTGGGTTGGCTTAG
129 C-GCACGCTCGTTTCATGGGTTGGCTTAG
*
26853920 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGACTTCATTCCATGTCTAAG
26853947 CATACGGAGC
Statistics
Matches: 258, Mismatches: 74, Indels: 22
0.73 0.21 0.06
Matches are distributed among these distances:
156 1 0.00
157 41 0.16
158 172 0.67
159 43 0.17
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGACTTCATTCCATGTCTAAGATCGGACCAGACCGAGGGTTGCAACAGAGGATCGACAG
CACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGTGCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:26853960 original size:26 final size:26
Alignment explanation
Indices: 26853920--26853972 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26853910 GTTGGCTTAG
*
26853920 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGCTCATTCCTA-GTCTAA
26853946 GCATACGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCTAGTCTAA
26853972 G
1 G
26853973 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCTAGTCTAA
Found at i:26854673 original size:26 final size:26
Alignment explanation
Indices: 26854643--26854695 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26854633 GTTGACTTAG
26854643 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
26854669 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
26854695 G
1 G
26854696 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:26854867 original size:26 final size:26
Alignment explanation
Indices: 26854829--26854879 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26854819 TGGCTTAGGT
*
26854829 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGCTCATTACCA-GTCTAAGC
26854855 ATACGGAGCTCATTACCAGTCTAAG
1 ATACGGAGCTCATTACCAGTCTAAG
26854880 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGCTCATTACCAGTCTAAGC
Found at i:26856331 original size:905 final size:904
Alignment explanation
Indices: 26853762--26856668 Score: 4183
Period size: 908 Copynumber: 3.2 Consensus size: 904
26853752 GTTGACTTAT
* * * * * * *
26853762 GCATACGGACTTCA-GTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCAACAGTAGGATCGAC
1 GCATACGGAGTTCATTTCC-AGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGCAGGATCGAC
* * * * * *
26853826 AGCATGCAGGGGGGACTGGGTCGATCCCCGGCCTGCGCATTCTACCTCTCCGGTCGGTTGAGCGC
65 AGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGC
*
26853891 CTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
* * *
26853956 CTCATTCCTAGTCTAAGATTTTGAGCCACAGTACACATGCTGGGCTCTGGCATGTGCTGGTGCCA
195 CTCATTCC-AGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
* * * * * * * **
26854021 TATTTTTTTCGCCTGGGGCACCATCCACGGAGCATCGTCGGAGAGCCAAACCGACACCATTGGGG
259 CATTTTTTTTGCCCGAGGCACCATCGACGGAGCATCGCCGGAGAGCCTAACCGACGGCATTGGGG
* * *
26854086 GTTCTGGCGATTGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCAATAGGTGCTGGTACTTGGC
324 GTTCCGGCGATT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGC
* * *
26854151 CCCTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTTACACCCCCTTAAAGAGCATTTGA
388 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAACACCCCCTTAAAGAGCATTTGA
***
26854216 GATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTA
453 GATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGG
*
26854281 TCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
518 TCACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
26854346 GGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTGAAGAAATTTAAAAAAATCCTGAACCA
583 GGATCACCTCTACCAAATTTGGGGACAAAA-TCTTTCTAAAAAAATTTAAAAAAATCCCGAACCG
26854411 TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAG
647 TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAG
* * *
26854476 GCTTAGGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGAATGGCAGAAATATGGA
712 GCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAA
* * * * *
26854541 GATGCGCTTGAACCTACCTACCACCCGTTCGATCCCCTGCTTGCGCATCCTGCCTCTCTGGTCGA
777 GATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTGTGCATCCTGCCTCTCTGGTCGG
* * *
26854606 CTGAGCGCCCTCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAA
842 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * * **
26854669 GCATACGGAGTTCA-TTCCTAGTCTAAGATCAAATCGGATTGAGGGTTGCGGCAACAGGATCGGT
1 GCATACGGAGTTCATTTCC-AGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGCAGGATCGAC
* * * * * *
26854733 AGCATGCAGGGGGGACCGAGTCGATCCTCGGCTTGCGTATTCTGCCTCTCTGGCCGGCTGAGCGT
65 AGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGC
* * * *
26854798 CTGCACCCTCGTTTTGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCATACGGAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
* * *
26854863 CTCATTACCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTTGGGCATGTGCTAGTGCCG
195 CTCATT-CCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
*
26854928 CATTTTTTTCT-CCC-AGGGCACCATCGCCGGAGCATCGCCGGAGAGCCTAACCGACGGCATTGG
259 CATTTTTTT-TGCCCGA-GGCACCATCGACGGAGCATCGCCGGAGAGCCTAACCGACGGCATTGG
* * *
26854991 GGATTCCGGCGATTGGGGGGCCCGGGGGGGTGTGCGCACATGGTGTGCTATGGGTGCTGGTACTT
322 GGGTTCCGGCGATTGGGGGG-CC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTT
* *
26855056 GGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
385 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAACACCCCCTTAAAGAGCATT
*
26855121 TGAGATTTTATAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
450 TGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
26855186 CGGTCACAAAATCTTCTCCA-TTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAAT
515 CGGTCACAAAATCTTCTCCACTTT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * *
26855250 ACAAGGATCACCTCTACCAAATTTGGGGACGAAACTCTTTCTAAAAAAATTAAAAAAAATTCCGA
579 ACAAGGATCACCTCTACCAAATTTGGGGAC-AAAATCTTTCTAAAAAAATTTAAAAAAATCCCGA
* *
26855315 ATCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGGGTCGTCTTGCCACGAAACTTCACAT
643 ACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACAT
*
26855380 GAATGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
708 GAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
* * *
26855445 TGAAGATGTACTCGAACCCACCTACCACCCGTTCGATCTCCGGCTTGTGCATCCTGCCTCTCTGG
773 TGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTGTGCATCCTGCCTCTCTGG
* *
26855510 TTGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
838 TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
26855575 AA
903 AA
* * * * **
26855577 GCTTACAGAGTTCATTTCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGATAGTAGGATCGGTA
1 GCATACGGAGTTCATTTCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGCAGGATCGACA
* * * ** ** *
26855642 GCACGTAGGGGAGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAATCGATTGAGTGCC
66 GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCC
* * * * * *
26855707 CGTACGCTCGTTTCATGTGTTGGCTTAGGCATGCAGAGTTCATTCCATGTCAAAGCATACGG-GC
131 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGC
* * *
26855771 TCATTCCAAGTCTAAGATTCTCAGCCATGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAC
196 TCATTCC-AGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAC
* *
26855836 ATTTTTTTTGCCCGAGGCACCATCGTCGGAGCATCGCCAGAGAGCCTAACCGACGGCATTGGGGG
260 ATTTTTTTTGCCCGAGGCACCATCGACGGAGCATCGCCGGAGAGCCTAACCGACGGCATTGGGGG
* ** * * *
26855901 TTCCGGCGATTCGGGGGGCCGGTGGGTACGCACACATGATGTGCGATGGGTGCTGGTAGTTGGCC
325 TTCCGGCGATT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCC
* * * * *
26855966 CTTATATTGGCCCTCTATCCGTCATCAAACCTCGAGAACTAACACCCCTTTACAGGGCATTTGAG
389 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAG
26856031 -TTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGT
454 ATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGT
* *
26856095 CACAAAATCTTCTCCACTTTGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAATAAAAATACAAG
519 CACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * *
26856160 GATCACCTCTACCAAATTTTGGGACAAAATGCATTCTAAAAAAATTTAAAAAAATCCCAAACCGT
584 GATCACCTCTACCAAATTTGGGGACAAAAT-CTTTCTAAAAAAATTTAAAAAAATCCCGAACCGT
* * *
26856225 AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGCTCTTCTTGCCATGAAACTTCACATGAAGG
648 AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGG
*
26856290 CTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAAATGAAG
713 CTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAG
* *
26856355 ATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTGTGTATCCTACCTCTCTGGTCGGC
778 ATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTGTGCATCCTGCCTCTCTGGTCGGC
* * * *
26856420 TGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTTATCCCCAGTCTAA
843 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * *** * *
26856482 GCATATGGAGTTCATTCCCAGTCTAAGATCGGTTCGGATCGAGGTTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTTCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGCAGGATCGACA
* * * ** * * *
26856547 GCACACAGGGGGGGATCAGGTCGATCCCCGATTTACGCATTCTGCTTCT-TCGGTCGGCTGAGTG
66 GCACGCA-GGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCT-GGTCGGCTGAGCG
* *
26856611 CCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGC
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
26856669 CTCAGTCGGA
Statistics
Matches: 1782, Mismatches: 202, Indels: 33
0.88 0.10 0.02
Matches are distributed among these distances:
904 4 0.00
905 472 0.26
906 202 0.11
907 418 0.23
908 679 0.38
909 7 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (904 bp):
GCATACGGAGTTCATTTCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGC
TCATTCCAGTCTAAGATTTTGAGCCACGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA
TTTTTTTTGCCCGAGGCACCATCGACGGAGCATCGCCGGAGAGCCTAACCGACGGCATTGGGGGT
TCCGGCGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAGAT
TTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCA
CAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
TCACCTCTACCAAATTTGGGGACAAAATCTTTCTAAAAAAATTTAAAAAAATCCCGAACCGTAAA
AAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTT
AGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
TGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTGTGCATCCTGCCTCTCTGGTCGGCTGA
GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:26856485 original size:26 final size:26
Alignment explanation
Indices: 26856456--26856508 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26856446 GTTGACTTAG
*
26856456 GCATATGGAGTTTATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
26856482 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
26856508 G
1 G
26856509 ATCGGTTCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:26856861 original size:26 final size:26
Alignment explanation
Indices: 26856825--26856877 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26856815 GTTGACTTAG
26856825 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* * *
26856851 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
26856877 G
1 G
26856878 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:26857153 original size:159 final size:158
Alignment explanation
Indices: 26856851--26857351 Score: 474
Period size: 159 Copynumber: 3.2 Consensus size: 158
26856841 CCCAGCCTAA
* * * *
26856851 GCATGCGGAGTTCATTCCCA-GTCTAAGATCAAACCGGACCAAGGGTTGCGACAGTGGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCACACCAGACCAAGGGTTGTGACAGTGGGATCGAC
* * * * * *
26856915 AGCACACAGGA-GGGATCGGGCCGATCCTCGACTTACGCATTCTGCCTCTTCGACCGGCTGAGCG
65 AGCACACAAGAGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCC-CTTCGGCCGGCTGAGCG
* **
26856979 CCCGCACACCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTTGTTTCATGGGTTGGCTTAG
* * * * * * **
26857009 GCATAGGGAGCTCATTCCATGTCTAAG-TCCCAGCCAGATCAAGGGTTGTGGCAGCGGGATCGGT
1 GCATACGGAGTTCATTCCATGTCTAAGATCACA-CCAGACCAAGGGTTGTGACAGTGGGATCGAC
* * * * *
26857073 AGCACACAAAAGGGGATCAGGTCGATCCCCGGCTTGCGCATTATGCCACTTCGGCCGGCTCAACG
65 AGCACACAAGAGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCC-CTTCGGCCGGCTGAGCG
* * *
26857138 CCCGTACGCTTGTTTCGTGGGTTGACTTATG
129 CCCGCACGCTTGTTTCATGGGTTGGCTTA-G
* * * ** *
26857169 G-ATACAGAGTTCATTCCCA-ATCTAAGATCATACTGGACCGAA-GGTTGTGACAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCACACCAGACC-AAGGGTTGTGACAGTGGGATCGA
* * * * * **
26857231 CAGCACGCAAGGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCCCTCTGGTTGGCTGAGC
64 CAGCACACAAGAGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCCTTC-GGCCGGCTGAGC
* * *
26857296 GACAGCACGCTTGTTTCATGGGTTCGCTTAG
128 GCCCGCACGCTTGTTTCATGGGTTGGCTTAG
*
26857327 GCATATGGAGTTCATTCCATGTCTA
1 GCATACGGAGTTCATTCCATGTCTA
26857352 GGCATACGAA
Statistics
Matches: 268, Mismatches: 65, Indels: 19
0.76 0.18 0.05
Matches are distributed among these distances:
157 6 0.02
158 61 0.23
159 191 0.71
160 10 0.04
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCACACCAGACCAAGGGTTGTGACAGTGGGATCGACA
GCACACAAGAGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCCTTCGGCCGGCTGAGCGCC
CGCACGCTTGTTTCATGGGTTGGCTTAG
Found at i:26858088 original size:26 final size:26
Alignment explanation
Indices: 26858052--26858101 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
26858042 GACTTAGGCC
26858052 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
*
26858078 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
26858102 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:26858453 original size:26 final size:26
Alignment explanation
Indices: 26858417--26858469 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26858407 GTTGACTTAG
26858417 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26858443 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26858469 G
1 G
26858470 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26858722 original size:368 final size:365
Alignment explanation
Indices: 26858040--26859035 Score: 1041
Period size: 368 Copynumber: 2.7 Consensus size: 365
26858030 GTTTCGTGGA
* *
26858040 TTGACTTAGGCCTACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
1 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
26858105 GGACCGGATCGAGGGTTACAACAGCAGGATCGGCAGCACGTAGGAGGTACCGGGCTGATCCCTGG
66 GGACTGGATCGAGGGTT-GAGCAGCAGGATCGGCAGCACGCAGG-GGAACCGAGCCGATCCCCGG
* *** * * * **
26858170 CTTGCGCATTCTATTTCTCCGGCTGGTAGAGCACCCATACGCTCGTTTCGTGGGTTGGCTTAGGC
129 CTTGCGAATTCTGCCTCTCCTGCCGGT-GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * *
26858235 ATACGGAGTACATTCCACGTCTAAGCCCCCAGTCGGATCGAGGGTTGTGGCAG-AGGACCGACAA
193 ATACGGAGTACATTCCACTTCTAAG-CCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAG
* * * ** * *
26858299 CGGGATTGGCAGCACACAGAGGAGGATCGAGCCAATCCCCGACTTGTGTATTATGCCTC-TCTGG
257 CGGAATCGGCAGCACACAAAGGAGGATCGAGCCAATCCCCGACTTACGCATTATGCCTCTTC-AG
* * * ** * *
26858363 CCGGCCTCTCCTGTTGGCTGAGTGCCCACACGCTCGTTTTATGAG
321 CCGGCCTCTCCGGCTAGCTGAACGCCCACACGCTCATTTCATGAG
*
26858408 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
26858473 AGACTGGATCGATGGTTGTAGTAGCAGGATCGACAGCAAGCACGGGGAACCGAGCCGATCCCCAG
66 GGACTGGATCGAGGGTTG-AGCAGCAGGATCGGCAGCACGCA-GGGGAACCGAGCCGATCCCCGG
*
26858538 CTTGCGAATTCTGCCTCTCCTACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
129 CTTGCGAATTCTGCCTCTCCTGCCGG-TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * * *
26858603 ATACGGAGTACATTCCACTTCTAAGCCCCAACCAGACCGAGGGTTATGGCAGCAGGACTGACAGT
193 ATACGGAGTACATTCCACTTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGC
* * * * *** * * * *
26858668 GTAATCGGTAGCACGCAAAGGAGGATCGGGTTGATTCTCGGCTTACGCATTATGCCTCTTCAGTC
258 GGAATCGGCAGCACACAAAGGAGGATCGAGCCAATCCCCGACTTACGCATTATGCCTCTTCAGCC
* * * * * *
26858733 GGCCTCTTCGGCTAGCTGAACGCCCGCATGCTTATTTCGTGGG
323 GGCCTCTCCGGCTAGCTGAACGCCCACACGCTCATTTCATGAG
* * * *
26858776 TTGACTTAGGCACACGAAGTTCATCCTCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
26858841 GGA-TCAGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGGGGGGACCGAGCCGATCCCCG
66 GGACT-GGATCGAGGGTTGAG-CAGCAGGATCGGCAGCACGCA-GGGGAACCGAGCCGATCCCCG
* * * * **
26858905 GCTTGCGTATTCTGCCTCT-CTGGTCGGTTGAGTGCCCGCACACTCGTTTCGTGGGTTTTCTTAG
128 GCTTGCGAATTCTGCCTCTCCT-GCCGG-TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
26858969 GCATAGGGAGCT-CATTCCA-TGTCTAAGCCCCAGCCGGTCTGAGGGTTGTGGCAGCGGGACCGA
191 GCATACGGAG-TACATTCCACT-TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGA
26859032 CAGC
254 CAGC
26859036 ACACAGAGGG
Statistics
Matches: 517, Mismatches: 101, Indels: 20
0.81 0.16 0.03
Matches are distributed among these distances:
367 27 0.05
368 484 0.94
369 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (365 bp):
TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACTGGATCGAGGGTTGAGCAGCAGGATCGGCAGCACGCAGGGGAACCGAGCCGATCCCCGGCT
TGCGAATTCTGCCTCTCCTGCCGGTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
CGGAGTACATTCCACTTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCGGA
ATCGGCAGCACACAAAGGAGGATCGAGCCAATCCCCGACTTACGCATTATGCCTCTTCAGCCGGC
CTCTCCGGCTAGCTGAACGCCCACACGCTCATTTCATGAG
Found at i:26859146 original size:160 final size:158
Alignment explanation
Indices: 26858875--26859314 Score: 386
Period size: 159 Copynumber: 2.8 Consensus size: 158
26858865 CAGGATCGGT
* * * * * * * ** * **
26858875 AGCACGCAGGGGGGACCGAGCCGATCCCCGGC-TTGCGTATTCTGCCTCTCTGGTCGGTTGAGTG
1 AGCACACAGGGGGGACCGGGCCAATCCCCGGCATAG-GCATTATGCCTCTCTGGCCGACTCAGCC
* ** * * *
26858939 CCCGCACACTCGTTTCGTGGGTTTTCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCC
65 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
** ** **
26859004 GGTCTGAGGGTTGTGGCAGCGGGACCGAC
130 GAACCAAGGGTTGTGGCAGCAAGACCGAC
* *
26859033 AGCACACAGAGGGGGACTGGGCCAATCCCCGGCAT-GTGCATTATGCCTCT-TCGGCCGTCTCAG
1 AGCACACAG-GGGGGACCGGGCCAATCCCCGGCATAG-GCATTATGCCTCTCT-GGCCGACTCAG
* * **
26859096 CGCCCCGCACGTTCGTTTCGTGGGTTGACTTATGG-ATACGGAGTTCATTCCCA-GCCTAAGATC
63 C-CCCCGCACGCTCGTTTCGTGGGTTGACTTA-GGCATACGGAGTTCATT-CCATGTCTAAGCCC
* * **
26859159 GAACCGAACCAAGGGTTGTGGTAGCAAGATTGAC
125 CAACCGAACCAAGGGTTGTGGCAGCAAGACCGAC
*** * * * * * *
26859193 AGCATGTAGGGGGGACCGGGTCGATCCCCGGCTTAGGCATTCTGCCTCTCTGGCCGACTGAGCTC
1 AGCACACAGGGGGGACCGGGCCAATCCCCGGCATAGGCATTATGCCTCTCTGGCCGACTCAGCCC
*
26859258 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
26859315 ATACGGAGCT
Statistics
Matches: 224, Mismatches: 48, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 56 0.25
159 82 0.37
160 76 0.34
161 5 0.02
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (158 bp):
AGCACACAGGGGGGACCGGGCCAATCCCCGGCATAGGCATTATGCCTCTCTGGCCGACTCAGCCC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCG
AACCAAGGGTTGTGGCAGCAAGACCGAC
Found at i:26859293 original size:158 final size:158
Alignment explanation
Indices: 26858811--26859313 Score: 471
Period size: 158 Copynumber: 3.2 Consensus size: 158
26858801 CTCAGTCTAA
* * * * * **
26858811 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGCGACAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGA-ACCGAGGGTTGTGGCAGCAGGATCGAC
* * * **
26858875 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGTATTCTGCCTCTCTGGTCGGTTGAG-TG
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCT-
* **
26858939 CCCGCACACTCGTTTCGTGGGTTTTCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * * ** * * *
26858969 GCATAGGGAGCTCATT-CCATGTCTAAGCCCCAGCCGGTCTGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGAACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * *
26859033 AGCACACAGAGGGGGACTGGGCCAATCCCCGGCATGTGCATTATGCCTCT-TCGGCCGTCTCAGC
65 AGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCT-GGCCGACTGAGC
* *
26859097 GCCCCGCACGTTCGTTTCGTGGGTTGACTTATG
128 -TCCCGCACGCTCGTTTCGTGGGTTGACTTA-G
* * * * *
26859130 G-ATACGGAGTTCATTCCCAGCCTAAGATCGAACCGAACCAAGGGTTGTGGTAGCAAGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGTGGCAGCAGGATCGACA
* * *
26859194 GCATGTAGGGGGGACCGGGTCGATCCCCGGCTTAG-GCATTCTGCCTCTCTGGCCGACTGAGCTC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTT-GCGCATTCTGCCTCTCTGGCCGACTGAGCTC
*
26859258 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAG
26859287 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
26859314 CATACGGAGC
Statistics
Matches: 268, Mismatches: 65, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 8 0.03
158 97 0.36
159 83 0.31
160 75 0.28
161 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCTCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:26859327 original size:26 final size:26
Alignment explanation
Indices: 26859287--26859339 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26859277 GTTGGCTTAG
*
26859287 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
26859313 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
26859339 G
1 G
26859340 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:26860046 original size:26 final size:26
Alignment explanation
Indices: 26860010--26860062 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26860000 GTTGACTTAG
26860010 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26860036 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26860062 G
1 G
26860063 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26860325 original size:159 final size:159
Alignment explanation
Indices: 26860077--26860539 Score: 448
Period size: 159 Copynumber: 2.9 Consensus size: 159
26860067 AACTGGATCA
* * * * *
26860077 AGGGTTACAGCAGTAGGACCGGTAGCACGCAGGGGGGACC-AGGCCGATCCCCGGCTTGCGCATT
1 AGGGTTGCAGCAGCAGGACTGATAGCACGCAGGGGGGACCGA-GCCGATCCCCGGCTTGTGCATT
* * * * * *
26860141 CTGCCTCTCCGGCCGACTGAGCGCCCGGACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT
65 ATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGCT
* * * *
26860206 CATGCAATGTCTAAGCCCCAG-CCGGACCG
130 CATCCCATGTCTAAGCACCAGACCGAACCG
** *
26860235 AGGGTTGTGGCAGCAGGACTGATAGCACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGTGCATT
1 AGGGTTGCAGCAGCAGGACTGATAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGTGCATT
* * * * * ** * * *
26860300 ATGCCTCTTCGACCGGCTCAACGCCCGTACGCTAGTTTTATGGGTTGACTTATGCATACGGAGGT
65 ATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGCT
* * * *
26860365 CATTCCCA-GTCTAAG-ATCGGATCGAACTG
130 CA-TCCCATGTCTAAGCACCAGACCGAACCG
* * * * * * *
26860394 AGGGTTGCAGCAGTAGGATTGATAGCATGCAGGGGGGACCGGGTCGATCCCCAGCTTGTGCATTT
1 AGGGTTGCAGCAGCAGGACTGATAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTA
* * ** * * *
26860459 TGCCTCTCCGACCGGCTGAGTGCCTGCATACTCGTTACGTGGGTTGGCTTAGGCATATGGAGTTC
66 TGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGCTC
*
26860524 ATTCCATGTCTAAGCA
131 ATCCCATGTCTAAGCA
26860540 TATGGAGCTC
Statistics
Matches: 241, Mismatches: 58, Indels: 11
0.78 0.19 0.04
Matches are distributed among these distances:
157 4 0.02
158 113 0.47
159 120 0.50
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (159 bp):
AGGGTTGCAGCAGCAGGACTGATAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTA
TGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGCTC
ATCCCATGTCTAAGCACCAGACCGAACCG
Found at i:26860502 original size:158 final size:159
Alignment explanation
Indices: 26860036--26860537 Score: 494
Period size: 158 Copynumber: 3.2 Consensus size: 159
26860026 CCCAGTCTAA
* * * * * *
26860036 GCATATGGAGTTCATTCCCA-GTCTAAGATCGAACTGGATCAAGGGTTACAGCAGTAGGACCGGT
1 GCATATGGAGTTCATTCCCATGTCTAAGATCGAACTCGAACGAGGGTTGCAGCAGTAGGACTGAT
* * * * *
26860100 AGCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGC
66 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTGAGCGC
* *
26860165 CCGGACGCCCGTTTCGTGGGTTGGCTTAG
131 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * ** * * * ** *
26860194 GCATAGGGAGCTCA-TGCAATGTCTAAGCCCCAGC-CGGACCGAGGGTTGTGGCAGCAGGACTGA
1 GCATATGGAGTTCATTCCCATGTCTAAGATCGAACTC-GAACGAGGGTTGCAGCAGTAGGACTGA
* * * * *
26860257 TAGCACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGTGCATTATGCCTCTTCGACCGGCTCAAC
65 TAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTGAGC
* * ** * *
26860322 GCCCGTACGCTAGTTTTATGGGTTGACTTAT
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
26860353 GCATACGGAGGTCATTCCCA-GTCTAAGATCGGA-TCGAACTGAGGGTTGCAGCAGTAGGATTGA
1 GCATATGGAGTTCATTCCCATGTCTAAGATCGAACTCGAAC-GAGGGTTGCAGCAGTAGGACTGA
* * * * *
26860416 TAGCATGCAGGGGGGACCGGGTCGATCCCCAGCTTGTGCATTTTGCCTCTCCGACCGGCTGAGTG
65 TAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTGAGCG
* ** *
26860481 CCTGCATACTCGTTACGTGGGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
26860511 GCATATGGAGTTCATT-CCATGTCTAAG
1 GCATATGGAGTTCATTCCCATGTCTAAG
26860538 CATATGGAGC
Statistics
Matches: 267, Mismatches: 70, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
157 6 0.02
158 141 0.53
159 117 0.44
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATATGGAGTTCATTCCCATGTCTAAGATCGAACTCGAACGAGGGTTGCAGCAGTAGGACTGAT
AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:26860541 original size:26 final size:26
Alignment explanation
Indices: 26860511--26860563 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26860501 GTTGGCTTAG
*
26860511 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGCTCATTCCCA-GTCTAA
26860537 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATATGGAGCTCATTCCCAGTCTAA
26860563 G
1 G
26860564 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGCTCATTCCCAGTCTAA
Found at i:26861265 original size:26 final size:26
Alignment explanation
Indices: 26861235--26861287 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26861225 GTTGACTTAG
26861235 GCATACAG-AGTTCATCCCCAGTCTAA
1 GCATAC-GTAGTTCATCCCCAGTCTAA
* *
26861261 GCATACGTTGTTCATTCCCAGTCTAA
1 GCATACGTAGTTCATCCCCAGTCTAA
26861287 G
1 G
26861288 TTCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGTAGTTCATCCCCAGTCTAA
Found at i:26861611 original size:26 final size:26
Alignment explanation
Indices: 26861581--26861633 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26861571 GTTGACTTAG
26861581 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
26861607 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26861633 G
1 G
26861634 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26862079 original size:26 final size:26
Alignment explanation
Indices: 26862049--26862101 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26862039 GTTGGCTTAG
*
26862049 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
26862075 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
26862101 G
1 G
26862102 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:26862805 original size:26 final size:26
Alignment explanation
Indices: 26862768--26862820 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26862758 GTTGACTTAG
26862768 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
* * *
26862794 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
26862820 G
1 G
26862821 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:26863450 original size:159 final size:158
Alignment explanation
Indices: 26863152--26863652 Score: 496
Period size: 158 Copynumber: 3.2 Consensus size: 158
26863142 AATCTAAGCG
* * *
26863152 TACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTAGACCGAGGGTTGTGGCAGCAGGATCGGCAG
1 TACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAG
* * * * * *
26863215 CACGCAGGGGGGACCAGGCCGATCCCC-AGCTTGCGCATTCTGCCT-TTCCGGTCAGTTGAGTGC
65 CACGCAGGGGGGACCGGGTCGATCCCCGA-CTTGCGCATTCTGCCTCTT-CGATCGGCTAAGTGC
* *
26863278 CCGCATGCCCGTTTCATGGGTTCGCTTAGGCA
128 CCGCATGCTCGTTTCGTGGGTT-GCTTAGGCA
* * * * * *
26863310 AAGGGAGCTCATTCCATGTCTAAGCCCCA-ACCAGACCGAGGGTTGTGGCAGCGGGACCGACAGC
1 TACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGC
* * *
26863374 ACACAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGATCGGCTCAGTGCCC
66 ACGCAG-GGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTAAGTGCCC
* *
26863439 GCATGCTCGTTTCGTGGGTTGAATTATGCA
130 GCATGCTCGTTTCGTGGGTTG-CTTAGGCA
* * * * * *
26863469 TACGGAATTCATTCC-TAGTCTAAG-ATCAGACCCGACAGAGGGTGGTGACAGCAGGATCGACAG
1 TACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAG
* * * * * * **
26863532 CACGCAGGGGGGACCGGGTTGATCCCTGGCTTACGCACTCTACCTCTTCGA-CTGGCTAAGCACC
65 CACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGATC-GGCTAAGTGCC
** * * *
26863596 CATACGCTCATTTCGTGGGTTAGCTTAGGTA
129 CGCATGCTCGTTTCGTGGGTT-GCTTAGGCA
26863627 TACGGAGTTCATTCCATGTCTAAGCA
1 TACGGAGTTCATTCCATGTCTAAGCA
26863653 TACGGAGCTC
Statistics
Matches: 279, Mismatches: 52, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.01
158 145 0.52
159 127 0.46
160 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
TACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGC
ACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGATCGGCTAAGTGCCCG
CATGCTCGTTTCGTGGGTTGCTTAGGCA
Found at i:26863656 original size:26 final size:26
Alignment explanation
Indices: 26863626--26863676 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26863616 TAGCTTAGGT
*
26863626 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGCTCATTCCCA-GTCTAAGC
26863652 ATACGGAGCTCATTCCCAGTCTAAG
1 ATACGGAGCTCATTCCCAGTCTAAG
26863677 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGCTCATTCCCAGTCTAAGC
Found at i:26864759 original size:26 final size:26
Alignment explanation
Indices: 26864730--26864782 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26864720 GTTGACATAG
*
26864730 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
26864756 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
26864782 G
1 G
26864783 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:26865116 original size:159 final size:158
Alignment explanation
Indices: 26864850--26865247 Score: 338
Period size: 159 Copynumber: 2.5 Consensus size: 158
26864840 CGATCCTCAG
* * * * * ** * * *
26864850 CTTGCGCATTCTACCTCTCCGGTCGACTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGTC
1 CTTGCGCATTATACCTCTCTGGCCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGGCATAGGC
* *** * * * ** * *
26864915 ATA-GGAAGGTCATT-CCATGTCTAAGCCCCAG-CAGGACCAAGGGTTGTGGCAGCGGGACCGAC
66 ATACGG-AGTTCATTCCCA-GTCT-AGGATCAGACCGAACTAAGGGTTGCAGCAGCAGGACCAAC
**
26864977 AGCACGCTGAGGGGGACCAAGCCGATCCCCGA
128 AGCACGAAG-GGGGGACCAAGCCGATCCCCGA
* * * * * ** *
26865009 CTTGCGCATTATGCCTCT-TCGGTCGGCTCAGCGCCTGCATGCTCGTTTTGTGGGTTGAG-ATAT
1 CTTGCGCATTATACCTCTCT-GGCCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTG-GCATAG
* *
26865072 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGAACTAAGGGTTGCAGTAGCAGGATCAACA
64 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGAACTAAGGGTTGCAGCAGCAGGACCAACA
** *
26865137 GCACGAAGGGGGGACCGGGTCGATCCCCGA
129 GCACGAAGGGGGGACCAAGCCGATCCCCGA
* * * * *
26865167 CTTGTGCATTCTACCTCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
1 CTTGCGCATTATACCTCTCTGGCCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGGCATAGGC
26865232 ATACGGAGTTCATTCC
66 ATACGGAGTTCATTCC
26865248 ATGTCTAAGC
Statistics
Matches: 187, Mismatches: 45, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
157 1 0.01
158 88 0.47
159 92 0.49
160 6 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
CTTGCGCATTATACCTCTCTGGCCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGGCATAGGC
ATACGGAGTTCATTCCCAGTCTAGGATCAGACCGAACTAAGGGTTGCAGCAGCAGGACCAACAGC
ACGAAGGGGGGACCAAGCCGATCCCCGA
Found at i:26865260 original size:26 final size:26
Alignment explanation
Indices: 26865230--26865282 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26865220 GTTGGCTTAG
*
26865230 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
*
26865256 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
26865282 G
1 G
26865283 GTTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:26865991 original size:26 final size:26
Alignment explanation
Indices: 26865955--26866007 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26865945 GTTGACTTAC
26865955 GCATACGGAGTTCATGCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
* *
26865981 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
26866007 G
1 G
26866008 ATCAAATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAGTCTAA
Found at i:26866601 original size:355 final size:356
Alignment explanation
Indices: 26865917--26866604 Score: 844
Period size: 355 Copynumber: 1.9 Consensus size: 356
26865907 TTTCTGGTTG
* * *
26865917 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATGCCCAGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTACGCATACGAAGTTCATCCCCAGTCTAAG
* * *
26865982 CATACGGAGTTCATTCCTAGTCTAAGATCAAATTAGATCGAGGGTTGCGGCAGCACGATCGACAG
66 CATACGGAGTTCATTCCCAGTCTAAGATCAAACTAGATCGAGGGTTGCGACAGCACGATCGACAG
** ** * * * * * * * *
26866047 AACGCAAGGGGGACCGGGTTGATCCTTGGCTTGCGTATTTTGCCTTTTCGATCGGTTGAGCGCCC
131 AACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGAGCCC
* *
26866112 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTAAGCCCCAACCGGA
196 GAACGCCCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTAAGCCCCAACCGGA
* * * * * * *
26866177 TCAAGGGTTGTGGCAGCAGGATCGATAGCATGTAGAGGGGGACCGGGCTGATCCCCGACTTATGC
261 CCAAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGACCAGGCCGATCCCCGACTTACGC
26866242 ATTATGCCTCTCCGACCGGCCTCTCCGGCCA
326 ATTATGCCTCTCCGACCGGCCTCTCCGGCCA
* * * *
26866273 GCTGAGTG-CCGCACGCTTGTTTCATGGGTTGACTTAGGCATGCGAAGTTCATCCCCAGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTACGCATACGAAGTTCATCCCCAGTCTAAG
* ** * * * * **
26866337 CATATGGAGTTCATTCCCAGTCTAAGATCGGACTAGA-CTGAGTGTTGTGATAGCAGGATCGGTA
66 CATACGGAGTTCATTCCCAGTCTAAGATCAAACTAGATC-GAGGGTTGCGACAGCACGATCGACA
* * * * *
26866401 GCATGCAGGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGAGCT
130 GAACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGAGCC
* ** *
26866466 CGAACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGCCG
195 CGAACGCCCGTTTCATGGGTTGGCTTAGGCATACAGAG-TACATTCCATGTCTAAGCCCCAACCG
** * *
26866530 GACCAAGGGTTGTGGCAGTGGGACC-AGCAGCACGTAGAGGGGGACCAGGCCGATCCCTGACTTG
259 GACCAAGGGTTGTGGCAGCAGGACCGA-CAGCACGTAGAGGGGGACCAGGCCGATCCCCGACTTA
26866594 CGCATTATGCC
323 CGCATTATGCC
26866605 CCTTTGGCCG
Statistics
Matches: 276, Mismatches: 53, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
354 2 0.01
355 266 0.96
356 8 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (356 bp):
GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTACGCATACGAAGTTCATCCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAAACTAGATCGAGGGTTGCGACAGCACGATCGACAG
AACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGAGCCC
GAACGCCCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTAAGCCCCAACCGGA
CCAAGGGTTGTGGCAGCAGGACCGACAGCACGTAGAGGGGGACCAGGCCGATCCCCGACTTACGC
ATTATGCCTCTCCGACCGGCCTCTCCGGCCA
Found at i:26866637 original size:159 final size:160
Alignment explanation
Indices: 26866409--26866839 Score: 494
Period size: 159 Copynumber: 2.7 Consensus size: 160
26866399 TAGCATGCAG
* * * *
26866409 GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAG-AGCTCGAACGC
1 GGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA-CCCGTACGC
* * * *
26866473 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-CCGGACCAAG
65 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGACCGGACCAAG
**
26866537 GGTTGTGGCAGTGGGACCAG-CAGCACGTAGA
130 GGTTGTGGCAGCAGGA-CAGACAGCACGTAGA
* * * ** * *
26866568 GGGGGACCAGGCCGATCCCTGACTTGCGCATTATGCCCCTTTGGCCGGCTCAGCACCCGTACGCT
1 GGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGTACGCT
* * * * ***
26866633 CGTTTCTTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GGCTAAG-TTTAGACCGGACCAAG
66 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAGACCGGACCAAG
** *
26866696 GGTTGTGGCAGCAGGATTGACAGCACGTAGT
130 GGTTGTGGCAGCAGGACAGACAGCACGTAGA
* * * * * *
26866727 GGGGGACCGGGTCAATCCCTGGCTTGCACATTCTGCCTCTCCGACCTGCTGAGCACCCGTACACT
1 GGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGTACGCT
*
26866792 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAAGC
66 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
26866840 ATACGGAGCT
Statistics
Matches: 222, Mismatches: 44, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
158 5 0.02
159 213 0.96
160 4 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (160 bp):
GGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACCCGTACGCT
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGACCGGACCAAGG
GTTGTGGCAGCAGGACAGACAGCACGTAGA
Found at i:26866861 original size:26 final size:26
Alignment explanation
Indices: 26866812--26866864 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26866802 GTTGGCTTAG
* *
26866812 GCATACGGAGTTCATTCGATGTCTAA
1 GCATACGGAGCTCATTCCATGTCTAA
26866838 GCATACGGAGCTCATTCCCA-GTCTAA
1 GCATACGGAGCTCATT-CCATGTCTAA
26866864 G
1 G
26866865 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATGTCTAA
Found at i:26867573 original size:26 final size:26
Alignment explanation
Indices: 26867525--26867576 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26867515 GATGACTTAG
* *
26867525 GCATACGGAGTTCATCCTTAGTCTAA
1 GCATACGGAGTCCATCCTCAGTCTAA
26867551 GCATACGGAGTCCATTCC-CAGTCTAA
1 GCATACGGAGTCCA-TCCTCAGTCTAA
26867577 AATCGAATCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTCCATCCTCAGTCTAA
Found at i:26867922 original size:26 final size:26
Alignment explanation
Indices: 26867893--26867945 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26867883 GTTAACTTAG
26867893 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26867919 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26867945 G
1 G
26867946 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26869145 original size:26 final size:26
Alignment explanation
Indices: 26869115--26869165 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26869105 CTTGACTTAG
*
26869115 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26869141 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
26869166 CAATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Done.