Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 280 of 402
Found at i:26870088 original size:355 final size:355
Alignment explanation
Indices: 26869436--26870090 Score: 895
Period size: 355 Copynumber: 1.8 Consensus size: 355
26869426 TGACTTAGGT
* ** *
26869436 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGACAGCAGGATCGGTAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGACAGCAGGATCGATAGC
* * * * * *
26869501 ATGTAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCG
66 ACGCAGGGGGGACCAGGGCGATCCACGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCG
*
26869566 CACGCTCATTTCATGGGTTGGCTTAGGCATATGGAGTACATTCCATGTCTAAGCCCCAGTCGGAC
131 CACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGAC
* * * * * * * * * *
26869631 TGAGGGTTGTGGTAGCAGGACTGGCAGTGGGATCGACAGCACGCAGAGAGGGACCGGGCTGATCT
196 AGAGAGTTGTGGCAACAGGACCGGCAGCGAGATCGACAACACGCAGAGAGGGACCAGGCTGATCC
* * *
26869696 CTGACTTACGCATTTTGCCTCTTAGACCGGTTGAGTGCCCACACGGTCGTTTCGTGGGTTGACTT
261 CCGACTTACGCATTATGCCTCTTAGACCGGCTGAGTGCCCACACGGTCGTTTCGTGGGTTGACTT
26869761 AGGTATACGAAGTTCATCCCCAGTCCAAGC
326 AGGTATACGAAGTTCATCCCCAGTCCAAGC
*
26869791 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGATAGCAGGATCGATAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGACAGCAGGATCGATAGC
* * **
26869856 ACGCAGGGGGGATC-GGGCAGATCCATGGCTTGCGCATTCTACCTCTCC-AGCCGGTTGAGCACC
66 ACGCAGGGGGGACCAGGGC-GATCCACGGCTTGCGCATTCTACCTCTCCGA-CCGACTGAGCACC
* *
26869919 CGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAG-CTG
129 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTC-G
* * *
26869983 GACAGAGAGTTGTGGCAACAGGACCGGCAGCGAGATCGACAACACGTATAG-GAGGACCAGGTTG
193 GACAGAGAGTTGTGGCAACAGGACCGGCAGCGAGATCGACAACACGCAGAGAG-GGACCAGGCTG
* * ** *
26870047 ATCCCCGGCTTGCGTGTTATGCCTCTTCGACCGGCTGAGTGCCC
257 ATCCCCGACTTACGCATTATGCCTCTTAGACCGGCTGAGTGCCC
26870091 GCTCCCTCAT
Statistics
Matches: 257, Mismatches: 39, Indels: 8
0.85 0.13 0.03
Matches are distributed among these distances:
354 6 0.02
355 251 0.98
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (355 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACGACAGCAGGATCGATAGC
ACGCAGGGGGGACCAGGGCGATCCACGGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACCCG
CACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGAC
AGAGAGTTGTGGCAACAGGACCGGCAGCGAGATCGACAACACGCAGAGAGGGACCAGGCTGATCC
CCGACTTACGCATTATGCCTCTTAGACCGGCTGAGTGCCCACACGGTCGTTTCGTGGGTTGACTT
AGGTATACGAAGTTCATCCCCAGTCCAAGC
Found at i:26870167 original size:171 final size:170
Alignment explanation
Indices: 26869906--26870658 Score: 653
Period size: 171 Copynumber: 4.4 Consensus size: 170
26869896 ACCTCTCCAG
* * * *
26869906 CCGGTTGAGCACCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCT
1 CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCT
* * * * * *
26869971 AAGCCCCAG-CTGGACAGAGAGTTGTGGCAACAGGACCGGCAGCGAGATCGACAACACGTATAGG
66 AAGCCCCAGTC-AGACCGAGAGTTGTGGCAGCAGGACCGGCAGCGAGATCGACAGCACGCAGAGG
* **
26870035 AGGACCAGGTTGATCCCCGGCTTGCGTGTTATGCCTCTTCGA
130 -GGACCAGGTTGATCCCCGGCTTACGCATTATGCCTCTTCGA
* * * *
26870077 CCGGCTGAGTGCCCGCTCCCTCATTTCGTGGGTTGGCCTAGGCATACGGAGTACATTCCACGTCT
1 CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCT
* * *
26870142 AAGCCCCAGTCAGACCGAGAGTTGTGGTAGTAGGACCGGCAGCGAGATCGACAGCACGTAGAGGG
66 AAGCCCCAGTCAGACCGAGAGTTGTGGCAGCAGGACCGGCAGCGAGATCGACAGCACGCAGAGGG
* * * * *
26870207 AGACCGGGTTGATCCCCGGCTTGCCCATTATGCCTTTTCGG
131 -GACCAGGTTGATCCCCGGCTTACGCATTATGCCTCTTCGA
* ** ** ** * * * *
26870248 TCGGCTGAATGCCCATACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCA-GTCT
1 CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCT
** * ** * ** * * * *
26870312 AAGCATACGGAGTTTATTCC--CAGTCT-AAG-ATC-GGACCGG-ATCGAGGGTTGCGACAGCAT
66 AAGC---CCCAG-TCAGACCGAGAGT-TGTGGCAGCAGGACCGGCAGCGA--GAT-CGACAGCAC
* ** ** * * *
26870371 GCAGTGGGGGTC-GGACCGATCCTCGGCTTACGTATTCTGCCTCTTCGA
123 GCAGAGGGGACCAGG-TTGATCCCCGGCTTACGCATTATGCCTCTTCGA
* * * *
26870419 TCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGAATACGGAGTACATTCCATGTCT
1 CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCT
* * *
26870484 AAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCACGCAGAGGA
66 AAGCCCCAGTCAGACCGAGAGTTGTGGCAGCAGGACCGGCAGCGAGATCGACAGCACGCAGAGG-
* * *
26870549 GGACTAGGTTGATCCCCGGCTTACGCATTAGGCCTCTCCGA
130 GGACCAGGTTGATCCCCGGCTTACGCATTATGCCTCTTCGA
* * * * * * *
26870590 CCAGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCA-TCCCCAGTC
1 CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCAC-GTC
26870654 TAAGC
65 TAAGC
26870659 ATACAGAGTT
Statistics
Matches: 454, Mismatches: 107, Indels: 42
0.75 0.18 0.07
Matches are distributed among these distances:
168 4 0.01
169 8 0.02
170 38 0.08
171 358 0.79
172 35 0.08
173 7 0.02
174 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (170 bp):
CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCT
AAGCCCCAGTCAGACCGAGAGTTGTGGCAGCAGGACCGGCAGCGAGATCGACAGCACGCAGAGGG
GACCAGGTTGATCCCCGGCTTACGCATTATGCCTCTTCGA
Found at i:26870318 original size:25 final size:26
Alignment explanation
Indices: 26870289--26870340 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
26870279 GTTGACTTAG
26870289 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
26870314 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26870340 G
1 G
26870341 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26870667 original size:26 final size:26
Alignment explanation
Indices: 26870631--26870683 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26870621 GTTGACCTAG
* *
26870631 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
26870657 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
26870683 G
1 G
26870684 ATCGAACAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:26870858 original size:355 final size:342
Alignment explanation
Indices: 26870068--26870881 Score: 936
Period size: 342 Copynumber: 2.3 Consensus size: 342
26870058 GCGTGTTATG
* * *
26870068 CCTCTTCGACCGGCTGAGTGCCCGC-TCCCTCATTTCGTGGGTTGGCCTAGGCATACGGAGTACA
1 CCTCTTCGACCGGCTGAGCGCCCGCATGCC-CATTTCGTGGGTTGGCTTAGGCATACGGAGTACA
* * * *
26870132 TTCCACGTCTAAGCCCCAGTCAGACCGAGAGTTGTGGTAGTAGGACCGGCAGCGAGATCGACAGC
65 TTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCGACAGC
* * * * * * ** * *
26870197 ACGTAGAGGGAGACCGGGTTGATCCCCGGCTTGCCCATTATGCCTTTTCGGTCGGCTGAATGCCC
130 ACGCAGAGGGAGACCAGGTTGATCCCCGGCTTACCCATTAGGCCTCTCCGACCAGCTGAACGCCC
* * * * *
26870262 ATACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGAGTTT
195 ACACGCTCGTTTCATGGGTTGACCTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAGAGTTC
* * * * * * * *
26870327 ATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCATGCAGTGGGGGTCGGACCGATC
260 ATTCCCAATCTAAGATCGAACAGAACCAAGGGTTGCGACAGCAAGCAGTGGGGGACGGACCGATC
** *
26870392 CTCGGCTTACGTATTCTG
325 CTCGGCTTACACATTCTA
* * * * *
26870410 CCTCTTCGATCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGAATACGGAGTACAT
1 CCTCTTCGACCGGCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTACAT
* *
26870475 TCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGACAGCA
66 TCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCGACAGCA
* * * *
26870540 CGCAGA-GGAGGACTAGGTTGATCCCCGGCTTACGCATTAGGCCTCTCCGACCAGCTGAGCGCCT
131 CGCAGAGGGA-GACCAGGTTGATCCCCGGCTTACCCATTAGGCCTCTCCGACCAGCTGAACGCCC
* *
26870604 GCACGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTT
195 ACACGCTCGTTTCATGGGTTGACCTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACAGAGTT
*
26870669 CATTCCCAATCTAAGATCGAACAGAACCAAGGGTTGTGGTAACAGGATCGACAGCACGTAGGGGG
259 CATTCCCAATCTAAGATCGAACAGAACCAAGGGTTG-CG--ACA-G--C-A-AGCA-GT--GGGG
* *
26870734 GACTGGGCCGATCCTCGGCTTGCACATTCTA
313 GAC-GGACCGATCCTCGGCTTACACATTCTA
* * **
26870765 CCT-TTCCGACCGACTGAGCGCCCGCATGCCCGTTTCGTGGGTTCACTTAGGCATTA-GGAGGT-
1 CCTCTT-CGACCGGCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCA-TACGGA-GTA
* *
26870827 CATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGGCAGC
63 CATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGC
26870882 ATGTAGAGGG
Statistics
Matches: 393, Mismatches: 61, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
341 3 0.01
342 197 0.50
343 51 0.13
344 1 0.00
346 3 0.01
347 1 0.00
349 1 0.00
350 1 0.00
351 3 0.01
352 2 0.01
354 8 0.02
355 118 0.30
356 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (342 bp):
CCTCTTCGACCGGCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTACAT
TCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCGACAGCA
CGCAGAGGGAGACCAGGTTGATCCCCGGCTTACCCATTAGGCCTCTCCGACCAGCTGAACGCCCA
CACGCTCGTTTCATGGGTTGACCTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAGAGTTCA
TTCCCAATCTAAGATCGAACAGAACCAAGGGTTGCGACAGCAAGCAGTGGGGGACGGACCGATCC
TCGGCTTACACATTCTA
Found at i:26871353 original size:12 final size:12
Alignment explanation
Indices: 26871333--26871363 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
26871323 GTGCTGGTTC
26871333 TTGGCCCTTATA
1 TTGGCCCTTATA
*
26871345 TTGGTCCTTATA
1 TTGGCCCTTATA
26871357 TTGGCCC
1 TTGGCCC
26871364 CCTATCCTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.26, G:0.19, T:0.42
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:26871880 original size:26 final size:26
Alignment explanation
Indices: 26871844--26871896 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26871834 GTTGACTTTG
* * *
26871844 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATACCCACTCTAA
26871870 GCATACGGAGTTCATACCCACTCTAA
1 GCATACGGAGTTCATACCCACTCTAA
26871896 G
1 G
26871897 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCACTCTAA
Found at i:26872484 original size:368 final size:367
Alignment explanation
Indices: 26871807--26872768 Score: 1045
Period size: 368 Copynumber: 2.6 Consensus size: 367
26871797 CTCTGGTCGT
* * * *
26871807 CTGAGCGCCTGCACGCTCGTTTTGTGGGTTGACTTTGGCATATGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * * *
26871872 ATACGGAGTTCATACCCACTCTAAGATCGGACCGAATCGAGGGTTGCGGTAGCAAGATCGACAGC
66 ATACGAAGTTCATTCCCAATCTAAGATCGAACCG-ATCGAGGGTTGCGATAGCAGGATCGACAGC
* * *
26871937 ACACAGGGGGGATCGGGTCGATCCACGGCTTGTGCATTCTACCTCTCCGGCCAGCTGAGAGCCTG
130 ACACAGGGGGGATCGAGTCGATCCACGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGAGCCCG
* ** * * *
26872002 CATGCTTGTTTTGTGGGTTGGCTTAGGCATACGAAGTACATTCGATGTCTAAGCCCCAGCCGGAT
195 CACGCTTGTTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGCCAGAT
* * * * * * * * * *
26872067 CGAGGGTTATGGCAGCAGGACTGGCAGTGGGCTCGGCAGCACACAGAGGGGGATCGGGTTGATCC
260 CGAGGGTTATGGCAACAAGACAGGAAGCGAGATCGGCAGCACACAGAGGGGGACCGAGCTGATCC
* ** * ** * * *
26872132 CCGGCTTGTGCATTTTGCCTCTCCGGTTGGCCTTTTCGACCGA
325 CCGACTTACGCATTATGCCTCTCCGGCCGACCTCTCCGACCGA
* *
26872175 CTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * * * *
26872240 ATACAAAGTTCATTCCTAGTCTAATATCGAACCAGATAGAGGGTTGCGACAGCAGGATCGATAGC
66 ATACGAAGTTCATTCCCAATCTAAGATCGAACC-GATCGAGGGTTGCGATAGCAGGATCGACAGC
*** * * * * *
26872305 ACACAGGGGGGATCGAGTCGATCTTTGGCTTGCGCATTCTACGTCTCCAGTC-GATTGAGTGCCC
130 ACACAGGGGGGATCGAGTCGATCCACGGCTTGCGCATTCTACCTCTCCGGCCAG-CTGAGAGCCC
* *
26872369 GTACG-TTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCAG
194 GCACGCTT-GTTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGCCAG
* * * *
26872433 A-CAGAGGGTTGTGGCAATAAGACAGGAAGCGAGATCGGTAGCACGCAGAGGGGGACCGAGCTGA
258 ATC-GAGGGTTATGGCAACAAGACAGGAAGCGAGATCGGCAGCACACAGAGGGGGACCGAGCTGA
* * * *
26872497 TCCCTGACTTACGCATTATGCCTCTCTGGCCGACCTCTCCGGCCTA
322 TCCCCGACTTACGCATTATGCCTCTCCGGCCGACCTCTCCGACCGA
* * * *
26872543 CTGAGTGCCCACACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAGGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* *
26872608 ATACGAAGTCCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGC-AGTAGCAGGATCGACAG
66 ATACGAAGTTCATTCCCAATCTAAGATCGAACC-GATCGAGGGTTGCGA-TAGCAGGATCGACAG
* * ** * * * * * * *
26872672 AACGCAACGGGGA-CTAGGCCGATCCCCGGCTTGCGCATTCTACCACTTCGGTCGGCTGAGCA-C
129 CACACAGGGGGGATCGA-GTCGATCCACGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAG-AGC
* *
26872735 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
192 CCGCACGCTTGTTTCATGGGTTGGCTTAGGCATA
26872769 TGGAGTTCAT
Statistics
Matches: 487, Mismatches: 98, Indels: 18
0.81 0.16 0.03
Matches are distributed among these distances:
367 7 0.01
368 477 0.98
369 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (367 bp):
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACGAAGTTCATTCCCAATCTAAGATCGAACCGATCGAGGGTTGCGATAGCAGGATCGACAGCA
CACAGGGGGGATCGAGTCGATCCACGGCTTGCGCATTCTACCTCTCCGGCCAGCTGAGAGCCCGC
ACGCTTGTTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGCCAGATC
GAGGGTTATGGCAACAAGACAGGAAGCGAGATCGGCAGCACACAGAGGGGGACCGAGCTGATCCC
CGACTTACGCATTATGCCTCTCCGGCCGACCTCTCCGACCGA
Found at i:26872625 original size:26 final size:26
Alignment explanation
Indices: 26872577--26872630 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
26872567 TCGGTTGACT
* * *
26872577 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGAAGTCCATCCCCAATC
*
26872603 TAGGCATACGAAGTCCATTCCCAATC
1 TAGGCATACGAAGTCCATCCCCAATC
26872629 TA
1 TA
26872631 AGATCGAACC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.24
Consensus pattern (26 bp):
TAGGCATACGAAGTCCATCCCCAATC
Found at i:26872791 original size:26 final size:26
Alignment explanation
Indices: 26872761--26872814 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
26872751 TGGGTTGACT
* *
26872761 TAGGCATATGGAGTTCATCCCCAGTC
1 TAGGCATATGGAGTCCATCCCCAATC
*
26872787 TAGGCATATGGAGTCCATTCCCAATC
1 TAGGCATATGGAGTCCATCCCCAATC
26872813 TA
1 TA
26872815 AGATCGAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATATGGAGTCCATCCCCAATC
Found at i:26872879 original size:184 final size:184
Alignment explanation
Indices: 26872554--26872896 Score: 542
Period size: 184 Copynumber: 1.9 Consensus size: 184
26872544 TGAGTGCCCA
*
26872554 CACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAGGCATACGAAGTCC
1 CACGCTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAGGCATACGAAGTCC
* * *
26872619 ATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGCAGTAGCAGGATCGACAGAACGCAACGGGG
66 ATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGCAGTAACAGGATCGACAGAACGCAACAGGG
* * *
26872684 ACTAGGCCGATCCCCGGCTTGCGCATTCTACCACTTCGGTCGGCTGAGCACCCG
131 ACCAAGCCGATCCCCGGCTTGCACATTCTACCACTTCGGTCGGCTGAGCACCCG
* * * *
26872738 CACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAGGCATATGGAGTCC
1 CACGCTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAGGCATACGAAGTCC
* * * * *
26872803 ATTCCCAATCTAAGATCGAACTAGACCGAGGGTTGCGGTAACAGGATCGACAGCACGTAGCAGGG
66 ATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGCAGTAACAGGATCGACAGAACGCAACAGGG
26872868 ACCAAGCCGATCCCCGGCTTGCACATTCT
131 ACCAAGCCGATCCCCGGCTTGCACATTCT
26872897 GCCTCTCCGA
Statistics
Matches: 143, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
184 143 1.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (184 bp):
CACGCTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAGGCATACGAAGTCC
ATTCCCAATCTAAGATCGAACCAGACCGAGGGTTGCAGTAACAGGATCGACAGAACGCAACAGGG
ACCAAGCCGATCCCCGGCTTGCACATTCTACCACTTCGGTCGGCTGAGCACCCG
Found at i:26874042 original size:26 final size:26
Alignment explanation
Indices: 26873992--26874044 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26873982 GTTGACTTAG
**
26873992 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
26874018 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
26874044 G
1 G
26874045 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:26874646 original size:368 final size:368
Alignment explanation
Indices: 26873966--26874961 Score: 1175
Period size: 368 Copynumber: 2.7 Consensus size: 368
26873956 TAAGCGCCCA
* * *
26873966 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCTGTCTAAGCATACGGAGTTC
1 TACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTC
* * * *
26874031 ATTCCCAATCTAAGATCGGACCGAATCAAGGGTTGTGGCAGCAAGATCGGTAGCACGCAGGGGGG
66 ATTCCCAGTCTAAGATCGGACCGAATCAAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGGGGGG
* * * * * ** * *
26874096 AC-CGAGCTGATCCCCGGCTTGCATATTCTGCCTCTCCAATCGGCTGAGTGCCCGCATGCTCGTT
131 ACTAGA-CCGATCCTCGGCTTGCACATTCTACCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGTT
** * * *
26874160 TCATGGGTTGGCTTAGGCATACAAAGTACATTCCATGTGTAAGCCCCAACCGGATCGAGGGTTAT
195 TCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGT
* * * * * * * * *
26874225 GACAGTAGGATCAGCAGTGGGATTGGCGGCACGCAGAGGGGGATCGGGCTGATCC-CTGGCTTGC
260 GACAGCAGGATCAGCAGCGAGATCGACAGCACGCAGAGGGGGACCGAGCTGATCCTC-AGCTTGC
* * * * *
26874289 GCATGATGACTCTACGGTCGGCCTCTCCGACCGGCTGAGC-GCCG
324 GCATGATGACTCTACGATCAGCCTCTCCGACCGACTGAACACCCG
* *
26874333 TACGCTCATTTCGTGGCTTGACTTAGGCTTACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTC
1 TACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTC
* * *
26874398 ATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGCT-GCAGCAGGATTGACAGCACGTAGGGGG
66 ATTCCCAGTCTAAGATCGGACCGAATCAAGGGTTG-TGGCAGCAGGATCGGCAGCACGTA-GGGG
* *
26874462 GGACTAGACCGATCCTCGGCTTGCACATTTTACCTCTCCAGCCAGCTGAGCGCCCGCACGCTCGT
129 GGACTAGACCGATCCTCGGCTTGCACATTCTACCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGT
* * ** **
26874527 TTCGTGGGTTGGCTTAGGTATACGGAGTACATTCCACATCTAA-CCCCTAGTCGGACCGAGGGTT
194 TTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCC-AACCGGACCGAGGGTT
26874591 GTGACAGCAGGATC-GACAGCGAGATCGACAGCACGCAGAGGGGGACCGAGCTGATCCTCAGCTT
258 GTGACAGCAGGATCAG-CAGCGAGATCGACAGCACGCAGAGGGGGACCGAGCTGATCCTCAGCTT
* * * * **
26874655 GTGCATTATGCCTCTCCGATCAGCCTCTCCGGTCGACTGAACACCCG
322 GCGCATGATGACTCTACGATCAGCCTCTCCGACCGACTGAACACCCG
* * * *
26874702 CACGCTCGTTTTGTGGGTTAACTTAGGCATT-CAGAGTTCATCCCCAGTCTAAGCATATGGAGTT
1 TACGCTCGTTTCGTGGGTTGACTTAGGC-TTACGGAGTTCATCCCCAGTCTAAGCATATGGAGTT
* * ** * * *
26874766 CATCCCCAGACTAAGATCAAACCAAACCAAGGGTTGTGGCAGCAGGATCGGCAGCATGTAGGGGG
65 CATTCCCAGTCTAAGATCGGACCGAATCAAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGGGGG
* * ** * *
26874831 GA-TCAGGCCAATCCTCGGCTTGTGCATTCTACCTCTCCGGCTGGCTGAGCGCCCGCACG-TCCG
130 GACT-AGACCGATCCTCGGCTTGCACATTCTACCTCTCCAGCCGGCTGAGCGCCCGCACGCT-CG
* *
26874894 TTTCATGGGTTGGCTTAGGCATAGGGA-AATCATTCCATGTCTAAGCCCCAACCGGACCGAGGGT
193 TTTCATGGGTTGGCTTAGGCATACGGAGTA-CATTCCATGTCTAAGCCCCAACCGGACCGAGGGT
26874958 TGTG
257 TGTG
26874962 GGAGTGAGAC
Statistics
Matches: 530, Mismatches: 86, Indels: 25
0.83 0.13 0.04
Matches are distributed among these distances:
367 118 0.22
368 297 0.56
369 113 0.21
370 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (368 bp):
TACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTC
ATTCCCAGTCTAAGATCGGACCGAATCAAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGGGGGG
ACTAGACCGATCCTCGGCTTGCACATTCTACCTCTCCAGCCGGCTGAGCGCCCGCACGCTCGTTT
CATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTG
ACAGCAGGATCAGCAGCGAGATCGACAGCACGCAGAGGGGGACCGAGCTGATCCTCAGCTTGCGC
ATGATGACTCTACGATCAGCCTCTCCGACCGACTGAACACCCG
Found at i:26875086 original size:159 final size:158
Alignment explanation
Indices: 26874795--26875386 Score: 480
Period size: 159 Copynumber: 3.7 Consensus size: 158
26874785 AACCAAACCA
* * * * * * * *
26874795 AGGGTTGTGGCAG-CAGGATCGGCAGCATGTAGGGGGGATCAGGCCAATCCTCGGCTTGTGCATT
1 AGGGTTGTGGCAGTGA-GACCGGCAGCACGCAGAGGGGACCAGGCCGATCCTCGGCTTGCGCATT
* * * * * * * * *
26874859 CTACCTCTCCGGCTGGCTGAGCGCCCGCACG-TCCGTTTCATGGGTTGGCTTAGGCATAGGGAAA
65 ATGCCTCTTCGGCCGGCTAAGTGCCCGCACGCT-CGTTTCATAGGTTGACTTAGGCATA--CAAA
*
26874923 --TCATTCCATGTCTAAGCCCCAACCGGACCG
127 GCTCATTCCATGTCTAAGCCCCAATCGGACCG
* * * * *
26874953 AGGGTTGTGGGAGTGAGACCGGCAGCACGTAGAGAGGGACCTGGCTGATCCTCGGCTTGTGCATT
1 AGGGTTGTGGCAGTGAGACCGGCAGCACGCAGAG-GGGACCAGGCCGATCCTCGGCTTGCGCATT
* * * * * *
26875018 ATGCCTCTTTGGCCGGCTAAGTTCCTGCACGCTTGTTTCATAGGTTGACTTATGCATACAAAGTT
65 ATGCCTCTTCGGCCGGCTAAGTGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACAAAGCT
* ***** *
26875083 CATTCCCA-ATCTAAGATTGGATCGGACCT
130 CATT-CCATGTCTAAGCCCCAATCGGACCG
* * * * *
26875112 AGGGTTGCGACAGT-AGGATCGCCAGCACGCA-AGGGGGACCAGGCCGATCCCCGGCTTGCGCAT
1 AGGGTTGTGGCAGTGA-GACCGGCAGCACGCAGA-GGGGACCAGGCCGATCCTCGGCTTGCGCAT
* * * * ***
26875175 TCTGCCTCTTCGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGC
64 TATGCCTCTTCGGCCGGCTAAGTGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACAAAGC
* *
26875240 TCATTCCATGTCTAAGCCCCAGTCGGACTG
129 TCATTCCATGTCTAAGCCCCAATCGGACCG
* * * *
26875270 AGGGTTGTGGTAGTGGGACCGGCAGCATGCAGAGGGGCACCAGGCCGATCCTTGGCTTGCGCATT
1 AGGGTTGTGGCAGTGAGACCGGCAGCACGCAGAGGGG-ACCAGGCCGATCCTCGGCTTGCGCATT
* ** * * * * *
26875335 TTGCCTCTTCGATCGGCTCAGCT-CTCACATGCTCGTTTCATGGGTTGACTTA
65 ATGCCTCTTCGGCCGGCTAAG-TGCCCGCACGCTCGTTTCATAGGTTGACTTA
26875387 TGTACACGGA
Statistics
Matches: 341, Mismatches: 80, Indels: 25
0.76 0.18 0.06
Matches are distributed among these distances:
157 6 0.02
158 150 0.44
159 180 0.53
160 5 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
AGGGTTGTGGCAGTGAGACCGGCAGCACGCAGAGGGGACCAGGCCGATCCTCGGCTTGCGCATTA
TGCCTCTTCGGCCGGCTAAGTGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACAAAGCTC
ATTCCATGTCTAAGCCCCAATCGGACCG
Found at i:26875214 original size:158 final size:157
Alignment explanation
Indices: 26874795--26875563 Score: 532
Period size: 158 Copynumber: 4.9 Consensus size: 157
26874785 AACCAAACCA
* * * * * * * * *
26874795 AGGGTTGTGGCAGCAGGATCGGCAGCATGTAGGGGGGATCAGGCCAATCCTCGGCTTGTGCATTC
1 AGGGTTGTGGCAGTAGGATCGACAGCACGCAAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTC
* * * * * * * * *
26874860 TACCTCTCCGGCTGGCTGAGCGCCCGCACG-TCCGTTTCATGGGTTGGCTTAGGCATAGGGAA-A
66 TGCCTCTTCGACCGGCTGAG-TCCCGCACGCT-CGTTTCATGGGTTGACTTATGCATA-CGAAGT
** ** * *
26874923 TCATT-CCATGTCTAAGCCCCAACCGGACCG
128 TCATTCCCA-GTCTAAGATCGGATCGGACCT
* * * * * * * * *
26874953 AGGGTTGTGGGAGT-GAGACCGGCAGCACGTAGAGAGGGACCTGGCTGATCCTCGGCTTGTGCAT
1 AGGGTTGTGGCAGTAG-GATCGACAGCACGCA-AGGGGGACCAGGCCGATCCCCGGCTTGCGCAT
* * * * * * * *
26875017 TATGCCTCTTTGGCCGGCTAAGTTCCTGCACGCTTGTTTCATAGGTTGACTTATGCATACAAAGT
64 TCTGCCTCTTCGACCGGCTGAG-TCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGAAGT
* *
26875082 TCATTCCCAATCTAAGATTGGATCGGACCT
128 TCATTCCCAGTCTAAGATCGGATCGGACCT
* * *
26875112 AGGGTTGCGACAGTAGGATCGCCAGCACGCAAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTC
1 AGGGTTGTGGCAGTAGGATCGACAGCACGCAAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTC
* * * * * *
26875177 TGCCTCTTCGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTC
66 TGCCTCTTCGACCGGCTGAGT-CCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGAAGTTC
* **
26875242 ATT-CCATGTCTAAG-CCCCAGTCGGA-CT
130 ATTCCCA-GTCTAAGATCGGA-TCGGACCT
* * * * * * **
26875269 GAGGGTTGTGGTAGTGGGACCGGCAGCATGCAGAGGGGCACCAGGCCGATCCTTGGCTTGCGCAT
1 -AGGGTTGTGGCAGTAGGATCGACAGCACGCA-AGGGGGACCAGGCCGATCCCCGGCTTGCGCAT
* * * * * * * * *
26875334 TTTGCCTCTTCGATCGGCTCAGCTCTCACATGCTCGTTTCATGGGTTGACTTATGTACACGGAGT
64 TCTGCCTCTTCGACCGGCTGAG-TCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGAAGT
*
26875399 TCATTCCCAGTCTAAGATCGGA-CTGGACCG
128 TCATTCCCAGTCTAAGATCGGATC-GGACCT
** * * * * *
26875429 A-GGTTGTGGCAACAGGATCGACAGCGCACAAAGGGGGACCAGGTCAATCCCCGGCTTACGCATT
1 AGGGTTGTGGCAGTAGGATCGACAGCACGC-AAGGGGGACCAGGCCGATCCCCGGCTTGCGCATT
* * * * * * *
26875493 CTACCTCTCCGATCGGTTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTA-GACATACGAAGT
65 CTGCCTCTTCGACCGGCTGAG-TCCCGCACGCTCGTTTCATGGGTTGACTTATG-CATACGAAGT
26875557 TCATTCC
128 TCATTCC
26875564 ATTTCTAAGC
Statistics
Matches: 475, Mismatches: 118, Indels: 36
0.76 0.19 0.06
Matches are distributed among these distances:
157 9 0.02
158 247 0.52
159 207 0.44
160 12 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
AGGGTTGTGGCAGTAGGATCGACAGCACGCAAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTC
TGCCTCTTCGACCGGCTGAGTCCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGAAGTTCA
TTCCCAGTCTAAGATCGGATCGGACCT
Found at i:26875342 original size:317 final size:316
Alignment explanation
Indices: 26874795--26875573 Score: 929
Period size: 317 Copynumber: 2.5 Consensus size: 316
26874785 AACCAAACCA
* * * * * * *
26874795 AGGGTTGTGGCAGCAGGATCGGCAGCATGTAGGGGGGATCAGGCCAATCCTCGGCTTGTGCATTC
1 AGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGACCAGGCCAATCCCCGGCTTGCGCATTC
* *
26874860 TACCTCTCCGGCTGGCTGAGCGCCCGCACG-TCCGTTTCATGGGTTGGCTTAGGCATAGGGAAAT
66 TACCTCTCCGGCCGGCTGAGCGCCCGCACGCT-CGTTTCATGGGTTGGCTTAGGCATAGGGAGAT
*
26874924 CATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGGAGTGAGACCGGCAGCACGTAGAGAG
130 CATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGGAGTGAGACCGGCAGCACGCAGAGAG
* * * * * * *
26874989 GGACCTGGCTGATCCTCGGCTTGTGCATTATGCCTCTTTGGCCGGCTAAGTTCCTGCAC-GCTTG
195 GGACCAGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGCTAAGCT-CT-CACAGCTCG
* * *
26875053 TTTCATAGGTTGACTTATGCATACAAAGTTCATTCCCAATCTAAGATTGGA-TCGGACCT
258 TTTCATAGGTTGACTTATGCACACAAAGTTCATTCCCAATCTAAGATCGGACT-GGACCG
* * * * *
26875112 AGGGTTGCGACAGTAGGATCGCCAGCACGCAAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTC
1 AGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGACCAGGCCAATCCCCGGCTTGCGCATTC
* * * *
26875177 TGCCTCTTCGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTC
66 TACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGATC
** * * * *
26875242 ATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGTAGTGGGACCGGCAGCATGCAGAG-GG
131 ATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGGAGTGAGACCGGCAGCACGCAGAGAGG
* * * *
26875306 GCACCAGGCCGATCCTTGGCTTGCGCATTTTGCCTCTTCGATCGGCTCAGCTCTCACATGCTCGT
196 G-ACCAGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGCTAAGCTCTCACA-GCTCGT
* * ** *
26875371 TTCATGGGTTGACTTATGTACACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCG
259 TTCATAGGTTGACTTATGCACACAAAGTTCATTCCCAATCTAAGATCGGACTGGACCG
* * * * *
26875429 A-GGTTGTGGCAACAGGATCGACAGCGCACAAAGGGGGACCAGGTCAATCCCCGGCTTACGCATT
1 AGGGTTGTGGCAGCAGGATCGACAGCACGC-AAGGGGGACCAGGCCAATCCCCGGCTTGCGCATT
** * * * * * * *
26875493 CTACCTCTCCGATCGGTTGAGCACCCGCACACTCGTTTCATGGGTTGGCTTAGACATACGAAGTT
65 CTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGAT
*
26875558 CATTCCATTTCTAAGC
130 CATTCCATGTCTAAGC
26875574 ATACAGAGCT
Statistics
Matches: 390, Mismatches: 66, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
315 3 0.01
316 26 0.07
317 359 0.92
318 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (316 bp):
AGGGTTGTGGCAGCAGGATCGACAGCACGCAAGGGGGACCAGGCCAATCCCCGGCTTGCGCATTC
TACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGATC
ATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGGAGTGAGACCGGCAGCACGCAGAGAGG
GACCAGGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGACCGGCTAAGCTCTCACAGCTCGTTT
CATAGGTTGACTTATGCACACAAAGTTCATTCCCAATCTAAGATCGGACTGGACCG
Found at i:26876308 original size:26 final size:26
Alignment explanation
Indices: 26876269--26876324 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
26876259 TGGGGTAACT
*
26876269 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* *
26876295 TAAGCATATAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
26876321 TAAG
1 TAAG
26876325 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:26876923 original size:329 final size:329
Alignment explanation
Indices: 26876298--26876982 Score: 887
Period size: 329 Copynumber: 2.1 Consensus size: 329
26876288 CCCAGTCTAA
* * *
26876298 GCATATAGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGCGTTGTGACAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGCGTTATGACAGCAGGATCGACA
* * *
26876363 GCACGAAGAGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCT
66 GCACGAAGAGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* * *
26876428 TGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCATGTCTATGCCCCAGCTGA
131 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGCTGA
* * ** * *
26876493 ACCAAGGGTTAAGGTAGCAGGACCGGTAGCGGGATCAGCAGCACGCAGAAAGGGACCGGGCTGAT
196 ACCAAGGGTTAAGGCAACAGGACCGACAGCGAGATCAGCAGCACACAGAAAGGGACCGGGCTGAT
* * * * **
26876558 ACCCGACTTAAGTATTATGCCTATCCGACCGGCTGAGCGGCCGCACACTTGTTTCATGGGTTGAC
261 ACCCGACTTAAGCATTACGCCTATCCGACAGGCTGAGCGCCCGCACACTCATTTCATGGGTTGAC
26876623 TTAG
326 TTAG
* * * * *
26876627 GCATAC-GAAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTATGGCAGCAGGATCTAT
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGCGTTATGACAGCAGGATCGAC
* * *
26876691 AGCACGCAAGA-GGGATCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGG-CTGGCTGAGT
65 AGCACG-AAGAGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTC-GGCTGAGC
** * * *
26876754 GCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATATGGAGTACATTCCACGTCTAAGCCCTAGC
128 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAG-
** * *
26876819 CTG-ACCAAGGGTTGTGGCAACAGGACCGACAGTGAGATC-GACAGCACACAGAGAGGGACCGGG
192 CTGAACCAAGGGTTAAGGCAACAGGACCGACAGCGAGATCAG-CAGCACACAGAAAGGGACCGGG
* * **
26876882 CTGAT-CCTCGACTTACGCATTACGCCTCTCCGACAGGCTGAGCGCCCGCACACTCATTTTGTGG
256 CTGATACC-CGACTTAAGCATTACGCCTATCCGACAGGCTGAGCGCCCGCACACTCATTTCATGG
26876946 GTTGACTTAG
320 GTTGACTTAG
*
26876956 GCATACAGAGTTCATCCCCAGTCTAAG
1 GCATACAGAGTTCATTCCCAGTCTAAG
26876983 CATGCGGAGT
Statistics
Matches: 306, Mismatches: 43, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
328 5 0.02
329 293 0.96
330 8 0.03
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (329 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGCGTTATGACAGCAGGATCGACA
GCACGAAGAGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGCTGA
ACCAAGGGTTAAGGCAACAGGACCGACAGCGAGATCAGCAGCACACAGAAAGGGACCGGGCTGAT
ACCCGACTTAAGCATTACGCCTATCCGACAGGCTGAGCGCCCGCACACTCATTTCATGGGTTGAC
TTAG
Found at i:26877334 original size:514 final size:512
Alignment explanation
Indices: 26876749--26877750 Score: 1346
Period size: 514 Copynumber: 2.0 Consensus size: 512
26876739 TCCGGCTGGC
* **
26876749 TGAGTGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATATGGAGTACATTCCACGTCTAAGCC
1 TGAGTGCCCGCACGCTTGTTTCGTAGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCC
*
26876814 CTAGCCTGACCAAGGGTTGTGGCAACAGGACCGACAGTGAGATCGACAGCACACAGAGAGGGACC
66 CTAGCCTGACCAAGGGTTGTGGCAACAGGACCGACAATGAGATCGACAGCACACAGAGAGGGACC
* * * **
26876879 GGGCTGATCCTCGACTTACGCATTACGCCTCTCCGACAGGCTGAGCGCCCGCACACTCATTTTGT
131 GAGCTGATCCTCGACTTACACATTACGCCTCTCCGACAGGCTGAGCGCCCACACACTCATTTCAT
*
26876944 GGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAG
196 GGGTTGACTTAGG-ATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * ** *
26877009 ATCGGACCGGATAAAGGGCTGCA-GCAGTAGGATCGACAGCACGTTGGGGGGACCGGGCTGATCC
260 ATCAGACCGGATAAAGGGCTG-AGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGCTGATCC
* * *
26877073 CCGGCTTGCGCATTCTGCCTCTTCGATCGGCTG-GCCGTCCGCACACCC-TTTTCATGGGTTGGC
324 CCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAG-CGCCCGCACACCCGTTTT-ATGGGTAGGC
26877136 TTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCAAGCCGGACCGAGGGTTGTGGTAGTC-AGAC
387 TTAGGCATAGGGAGCTCATTCCATGTCTAA-CCCAAGCCGGACCGAGGGTTGTGGTAG-CGAGAC
* * * * * *
26877200 TGGCAATACGTAGTGGGGGACTGGGTCGATCCCCGGCTTGCACATTCTACTTCTTCGATCAGT
450 CGACAACACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTACTTCTTCGATCAGT
* *
26877263 TGAGTGCCCGTACGTTTGTTTCGTAGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCC
1 TGAGTGCCCGCACGCTTGTTTCGTAGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCC
** * * * * * * * *
26877328 CTAGCCTGACTGATGGTTGTGGTAGCAGGACCGGCAATGGGATCGACAGCACGCAGAGGGGGATC
66 CTAGCCTGACCAAGGGTTGTGGCAACAGGACCGACAATGAGATCGACAGCACACAGAGAGGGACC
* * * * * ** *
26877393 GAGCTGATCCTCGGCTTGCACATTATGCCTCTCCGGCTGGCTGAGCGCCCATGCACTCGTTTCAT
131 GAGCTGATCCTCGACTTACACATTACGCCTCTCCGACAGGCTGAGCGCCCACACACTCATTTCAT
* ** *
26877458 GGGTTGACTTAGGATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCTTAGTCTATGA
196 GGGTTGACTTAGGATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * * * *
26877523 TCAGATCGGATCGAGGGTTGAGGCAGCAGGACCGGCAGCACGCAGGGGGGAGCGAGCTGATCCTC
261 TCAGACCGGATAAAGGGCTGAGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGCTGATCCCC
* * * *
26877588 GGCTTGCGTATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTTGTGGGTAGGCTTAG
326 GGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACACCCGTTTTATGGGTAGGCTTAG
* * * *
26877653 GCATAGGGAGCTCATTCCATGTCTAACCCCAGCTGGACCGAGGGTTGTGGTAGCGGGACCGACAG
391 GCATAGGGAGCTCATTCCATGTCTAACCCAAGCCGGACCGAGGGTTGTGGTAGCGAGACCGACAA
26877718 CACGCAGAGGGGGACCGGGTCGATCCCCGGCTT
456 CACGCAGAGGGGGACCGGGTCGATCCCCGGCTT
26877751 CCGCATTATG
Statistics
Matches: 420, Mismatches: 64, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
511 1 0.00
512 61 0.15
513 174 0.41
514 184 0.44
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (512 bp):
TGAGTGCCCGCACGCTTGTTTCGTAGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCC
CTAGCCTGACCAAGGGTTGTGGCAACAGGACCGACAATGAGATCGACAGCACACAGAGAGGGACC
GAGCTGATCCTCGACTTACACATTACGCCTCTCCGACAGGCTGAGCGCCCACACACTCATTTCAT
GGGTTGACTTAGGATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCGGATAAAGGGCTGAGGCAGCAGGACCGACAGCACGCAGGGGGGACCGAGCTGATCCCC
GGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACACCCGTTTTATGGGTAGGCTTAG
GCATAGGGAGCTCATTCCATGTCTAACCCAAGCCGGACCGAGGGTTGTGGTAGCGAGACCGACAA
CACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTACTTCTTCGATCAGT
Found at i:26877795 original size:158 final size:158
Alignment explanation
Indices: 26877534--26877989 Score: 463
Period size: 157 Copynumber: 2.9 Consensus size: 158
26877524 CAGATCGGAT
* * * * *
26877534 CGAGGGTTGAGGCAGCAGGACCGGCAGCACGCAGGGGGGAGCGAG-CTGATCCTCGGCTTGCGTA
1 CGAGGGTTGAGGTAGCAGGACCGACAGCACGCAGGGGGGACCGAGTC-GATCCCCGGCTTGCGCA
* * * * * ** * *
26877598 TTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCCCGTTTTGTGGGTAGGCTTAGGCATAGGGAG
65 TTATGCCTCTTCGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* * *
26877663 CTCATTCCATGTCTAACCCCA-GCTGGAC
130 TTCATTCCATGTCTAACACCATACTGGAC
* * * *
26877691 CGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTCCGCA
1 CGAGGGTTGAGGTAGCAGGACCGACAGCACGCAG-GGGGGACCGAGTCGATCCCCGGCTTGCGCA
* * * * * * *
26877756 TTATGCCTCTTTGGCCGGCTCAACGCTCATACGCTCGTTTCATGGGTTGACTTATGCATACGGAG
65 TTATGCCTCTTCGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* * * *
26877821 TTCATTCCCA-ATCTAAGATCATATTGGAC
130 TTCATT-CCATGTCTAACACCATACTGGAC
* ** * * * *
26877850 CAAGGGTTGCA-GTAGCAGGATTGACAGTACGTAGGGGGGACC-AGTCGATCCCTGGCTTGTGCA
1 CGAGGGTTG-AGGTAGCAGGACCGACAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCA
* * *
26877913 TTTTGCCTCTTCGGCCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGGCTTTGGCATACGGAG
65 TTATGCCTCTTCGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
26877978 TTCATTCCATGT
130 TTCATTCCATGT
26877990 TTAAGCATAC
Statistics
Matches: 239, Mismatches: 54, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
156 3 0.01
157 109 0.46
158 92 0.38
159 35 0.15
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (158 bp):
CGAGGGTTGAGGTAGCAGGACCGACAGCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGCGCAT
TATGCCTCTTCGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAACACCATACTGGAC
Found at i:26878020 original size:26 final size:26
Alignment explanation
Indices: 26877968--26878020 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26877958 GTTGGCTTTG
* * *
26877968 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGCTCATTCCATATCTAA
26877994 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
26878020 G
1 G
26878021 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:26878966 original size:24 final size:24
Alignment explanation
Indices: 26878914--26878968 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
26878904 CAAGGGTTGT
*
26878914 GGCAGCAGGACCGATAGCAAGATC
1 GGCAGCAGGACCGACAGCAAGATC
* * **
26878938 AGCAGCAGGACCGGCAGCGGGATC
1 GGCAGCAGGACCGACAGCAAGATC
26878962 GGCAGCA
1 GGCAGCA
26878969 TGCAGAGGGG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.38, T:0.05
Consensus pattern (24 bp):
GGCAGCAGGACCGACAGCAAGATC
Found at i:26880126 original size:26 final size:26
Alignment explanation
Indices: 26880090--26880142 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26880080 GTTAACTTAG
26880090 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26880116 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26880142 G
1 G
26880143 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26881096 original size:11 final size:11
Alignment explanation
Indices: 26881080--26881112 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
26881070 CTCGGGGCAC
26881080 CATCGCCAGAG
1 CATCGCCAGAG
*
26881091 CATCGCCGGAG
1 CATCGCCAGAG
26881102 CATCGCCAGAG
1 CATCGCCAGAG
26881113 AGCCTAACAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.24, C:0.36, G:0.30, T:0.09
Consensus pattern (11 bp):
CATCGCCAGAG
Found at i:26881727 original size:26 final size:26
Alignment explanation
Indices: 26881691--26881743 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26881681 GTTGAGTTAG
*
26881691 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
* *
26881717 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
26881743 G
1 G
26881744 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:26882081 original size:26 final size:26
Alignment explanation
Indices: 26882045--26882097 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26882035 GTTGACTTAG
*
26882045 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTATAA
*
26882071 GCATACGGAGTTCATTCCTAGTATAA
1 GCATACGGAGTTCATCCCTAGTATAA
26882097 G
1 G
26882098 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTATAA
Found at i:26882465 original size:26 final size:26
Alignment explanation
Indices: 26882413--26882465 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26882403 GTTGAGTTAG
* *
26882413 GCATACGAAGTTCATCCTTAGTGTAA
1 GCATACGAAGTTCATCCTCAGTCTAA
*
26882439 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACGAAGTTCA-TCCTCAGTCTAA
26882465 G
1 G
26882466 ATTAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCTCAGTCTAA
Found at i:26882793 original size:170 final size:170
Alignment explanation
Indices: 26882495--26882817 Score: 400
Period size: 170 Copynumber: 1.9 Consensus size: 170
26882485 TGCGGCAGCA
* * * *
26882495 GGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTGTCCGGTCGA
1 GGATCGACAGCACGCAAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGTCGA
*
26882560 CTGAATGCCCACACACTCGTTTCGTAGGTTGGCATAGGCATACGGAGTACATTCCACGTCTAAGC
66 CTGAACGCCCACACACTCGTTTCGTAGGTTGGCATAGGCATACGGAGTACATTCCACGTCTAAGC
*
26882625 -CCTAGCCAGACCGAGGGTTGTGGTAGCAGAACCGACAGTG
131 GCC-AGCCAGACCAAGGGTTGTGGTAGCAGAACCGACAGTG
* * * * * * *
26882665 GGATCGACAGCATGCAGGGGGGACCGAGCTGATTCCCAGCTTGTGCATTCTACCTCTTCGGTCGG
1 GGATCGACAGCACGCAAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGTCGA
* * * * * **
26882730 CTGAGCGCCCGCACGCTCGTTTCGT-GGATTGGCTTAGGCATAGGGAGCT-CATTCCGTGTCTAA
66 CTGAACGCCCACACACTCGTTTCGTAGG-TTGGCATAGGCATACGGAG-TACATTCCACGTCTAA
* *
26882793 GCGCCAGTCGGACCAAGGGTTGTGG
129 GCGCCAGCCAGACCAAGGGTTGTGG
26882818 CAGCCGGACC
Statistics
Matches: 128, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
169 2 0.02
170 123 0.96
171 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (170 bp):
GGATCGACAGCACGCAAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGTCGA
CTGAACGCCCACACACTCGTTTCGTAGGTTGGCATAGGCATACGGAGTACATTCCACGTCTAAGC
GCCAGCCAGACCAAGGGTTGTGGTAGCAGAACCGACAGTG
Found at i:26883859 original size:26 final size:26
Alignment explanation
Indices: 26883807--26883859 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
26883797 GTTGACTTAG
* * *
26883807 GCATACGGAATTCATCCCCAGTATAA
1 GCATACAGAATTCATCACCAATATAA
* *
26883833 GCATACAGAATTCATTACCAATCTAA
1 GCATACAGAATTCATCACCAATATAA
26883859 G
1 G
26883860 ATCAGATTGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCATCACCAATATAA
Found at i:26884914 original size:26 final size:26
Alignment explanation
Indices: 26884884--26884936 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26884874 GTTGACTTAG
*
26884884 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
26884910 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26884936 G
1 G
26884937 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26886519 original size:26 final size:26
Alignment explanation
Indices: 26886469--26886521 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26886459 GTTGGCTTAG
* *
26886469 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
26886495 GCATACGGAGCTCATTCTCA-ATCTAA
1 GCATACGGAGCTCATTC-CATATCTAA
26886521 G
1 G
26886522 ATTTTGGGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:26887224 original size:25 final size:26
Alignment explanation
Indices: 26887188--26887239 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
26887178 GTTGGCTTAG
26887188 GCATACGAAGTTCA-TCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
26887213 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
26887239 G
1 G
26887240 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:26887941 original size:26 final size:26
Alignment explanation
Indices: 26887911--26887960 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26887901 GACTTAGGCA
26887911 TACGGAGTTCATCCCCAGTCTAAGCT
1 TACGGAGTTCATCCCCAGTCTAAGCT
* *
26887937 TACGGAGTTCATTCCCAGTGTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
26887961 ATCGGACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCT
Found at i:26888236 original size:159 final size:159
Alignment explanation
Indices: 26887973--26888595 Score: 596
Period size: 159 Copynumber: 3.9 Consensus size: 159
26887963 CGGACTGGAC
* * ** * * *
26887973 CGAGGGTTGCGGTAGCAGGATTGATAGCACGCAG-GGTGGATCGGGCCGAT-CCCTAGCTTGCGC
1 CGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGAGCTTGCGC
* * * * * *
26888036 ATTCTGCCTCTTCGGTCGGTTGAGTGCCCGCACGCCCGTTTCATGGGTT-ATCTTAGGCATAGGG
66 ATTATGCCTCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGA-CTTAGGCATACGG
*
26888100 AGCTCATTCCATGTCTAAGCCCCAGCCGGAT
130 AGTTCATTCCA-GTCTAAGCCCCAGCCGGAT
* * * * *
26888131 CGAAGGTTGTGGCAACAGGACCGGCAGCACACAGAGGAGGATCGGGCCGATCCCCGA-CTTGCGC
1 CGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGAGCTTGCGC
* * * *
26888195 ATTATGCCTCTTCGGCCGGCTGAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTATGCATACGGA
66 ATTATGCCTCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* **** * *
26888260 GTTCATTCCCAGCCTAAG-ATTGGACTGGAC
131 GTTCATT-CCAGTCTAAGCCCCAG-CCGGAT
** * * * * *
26888290 CGAGGGTTACGACAGCAGGATCGACCGCACGTAG-GGGGGATCGGGTCGATCCCCG-GCTTGCGC
1 CGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGAGCTTGCGC
* * * * * * * * *
26888353 ATTCTGCCTCTCCTGTCGGTTGAGCGCCCGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGA
66 ATTATGCCTCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* *
26888418 GTACATTCCACGTTTAAGCCCCAGCCGGAT
131 GTTCATTCCA-GTCTAAGCCCCAGCCGGAT
* * * * * *
26888448 TGAGGGTTGTGGCAGCAGGACCGATAGCACGCAGAGGGGGATCGAGCCAATCCTC-AGCTTACGC
1 CGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGAGCTTGCGC
* ** * *
26888512 ATCATGCCTCTCCAACCGGCTGAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATATGGA
66 ATTATGCCTCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
*
26888577 GTTCATCCCCAGTCTAAGC
131 GTTCAT-TCCAGTCTAAGC
26888596 ATACAGAGTC
Statistics
Matches: 366, Mismatches: 88, Indels: 21
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 147 0.40
159 205 0.56
160 11 0.03
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
CGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGAGCTTGCGC
ATTATGCCTCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
GTTCATTCCAGTCTAAGCCCCAGCCGGAT
Found at i:26888521 original size:317 final size:317
Alignment explanation
Indices: 26887937--26888594 Score: 861
Period size: 317 Copynumber: 2.1 Consensus size: 317
26887927 AGTCTAAGCT
* * ** * *
26887937 TACGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGGATTGATAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCAGGATCGACAGCA
* * * *
26888002 CGCAGGGTGGATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTTCGGTCGGTTGAGTGCCCGC
66 CGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGC
* * * *
26888067 ACGCCCGTTTCATGGGTTATCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCGGATC
131 ACGCCCATTTCATGGGTTAGCTTAGGCATACGGAGCTCATTCCACGTCTAAGCCCCAGCCGGATC
* * * * *
26888132 GAAGGTTGTGGCAACAGGACCGGCAGCACACAGAGGAGGATCGGGCCGATCCCCGACTTGCGCAT
196 GAAGGTTGTGGCAACAGGACCGACAGCACACAGAGGAGGATCGAGCCAATCCCAGACTTACGCAT
* * ** * * * *
26888197 TATGCCTCTTCGGCCGGCTGAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTATGCA
261 CATGCCTCTCCAACCGGCTGAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCA
* * *
26888254 TACGGAGTTCATTCCCAGCCTAAGATTGGACTGGACCGAGGGTTACGACAGCAGGATCGACCGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCAGGATCGACAGCA
* * * *
26888319 CGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCTGTCGGTTGAGCGCCCGC
66 CGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGC
* * * * *
26888384 ATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTTTAAGCCCCAGCCGGAT
131 ACGCCCATTTCATGGGTTAGCTTAGGCATACGGAGCT-CATTCCACGTCTAAGCCCCAGCCGGAT
* * * * * *
26888448 TGAGGGTTGTGGCAGCAGGACCGATAGCACGCAGAGGGGGATCGAGCCAATCCTCAG-CTTACGC
195 CGAAGGTTGTGGCAACAGGACCGACAGCACACAGAGGAGGATCGAGCCAATCC-CAGACTTACGC
26888512 ATCATGCCTCTCCAACCGGCTGAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCA
259 ATCATGCCTCTCCAACCGGCTGAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCA
* *
26888571 TATGGAGTTCATCCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
26888595 CATACAGAGT
Statistics
Matches: 291, Mismatches: 48, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
316 1 0.00
317 288 0.99
318 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (317 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCAGGATCGACAGCA
CGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGC
ACGCCCATTTCATGGGTTAGCTTAGGCATACGGAGCTCATTCCACGTCTAAGCCCCAGCCGGATC
GAAGGTTGTGGCAACAGGACCGACAGCACACAGAGGAGGATCGAGCCAATCCCAGACTTACGCAT
CATGCCTCTCCAACCGGCTGAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCA
Found at i:26889127 original size:660 final size:660
Alignment explanation
Indices: 26887566--26890504 Score: 1648
Period size: 660 Copynumber: 4.3 Consensus size: 660
26887556 CCCAGTCTAA
* * * * ** * * * * *
26887566 GCATACAGAGTTCATTCACAGTCTAAGATCGAACCAGATCGAGGGTTGCGACAGTAGGATCGGCA
1 GCATACGGAGTTCATTCAAAGCCTAAGATCGGACTGGACCAAGGGTTACGACAGCAGGATCGACA
* * * * * * * * * * * *
26887631 GCACGCAGGGGGGATCGGG-CTGATTCTCGGCTTGCACATTTTACCTTTCC-GATCGGCTGAGTG
66 ACACGCAAGGGGGATCGGGTC-GATCCCCAGCTTGCGCATTCTGCCTCTCCTG-CCGACTGAGCG
* * ** *
26887694 CCTGCACGTTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTAAGGCCCAGCC
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGCC
* * * * * *
26887759 AGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGTAGAGGGGGACCGAGCTA
194 GGACTGAGGGTTGTGGAAGCAGGA----C--C--GAT----AGCACGCAGAGGGGGATCGAGCCA
* * * *
26887824 ATCCTCAGCTTGCACATTATGCCTTTTCGACTGGCCTCTCTAGCCGGCTGAGCGCCCGCACGCTC
247 ATCCTCAGCTT--AC-----G-C--ATC-A-T-GCCTCTCCAACCGGCTGAGCGCCCGCACACTC
* * *
26887889 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCTTACGGAGTTCATTCCCA
299 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTCCATTCCCA
* * * * * * * * ** * * * *
26887954 GTGTAAGATCGGACTGGACCGAGGGTTGCGGTAGCAGGATTGATAGCACGCAGGGTGGATCGGGC
364 GTCTAAGATCAGACTGGACCAAAGGTTACAGCAGCAAGACCGACAGCACGCAGGGGGGACCGGAC
* * * * * *
26888019 CGATCCCTAGCTTGCGCATTCTGCCTCTTCGGTCGGTTGAGTGCCCGCACGCCCGTTTCATGGGT
429 CAATCCCCAGCTTGCGCATTCTACCTCTTCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGT
* *
26888084 TATCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCGGATCGAAGGTTGTGGCAACAG
494 TAGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCGGATCGAAGGTTGTGACAACAG
* * ** * * *
26888149 GACCGGCAGCACACAGAGGAGGATCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGCCGG
559 GACCGACAGCACACAGAGGAGGACCAAGCCAATCCCAGACTTGCGCATTATGCCTCTTCGACCGG
* ** *
26888214 CTGAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTAT
624 CTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAT
** * * *
26888251 GCATACGGAGTTCATTCCCAGCCTAAGATTGGACTGGACCGAGGGTTACGACAGCAGGATCGACC
1 GCATACGGAGTTCATTCAAAGCCTAAGATCGGACTGGACCAAGGGTTACGACAGCAGGATCGACA
* * * * * **
26888316 GCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCTGTCGGTTGAGCGCC
66 ACACGCAAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCTGCCGACTGAGCGCC
* * * *
26888381 CGCATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTTTAAGCCCCAGCCGG
131 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGCCGG
* *
26888446 ATTGAGGGTTGTGGCAGCAGGACCGATAGCACGCAGAGGGGGATCGAGCCAATCCTCAGCTTACG
196 ACTGAGGGTTGTGGAAGCAGGACCGATAGCACGCAGAGGGGGATCGAGCCAATCCTCAGCTTACG
* *
26888511 CATCATGCCTCTCCAACCGGCTGAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATATGG
261 CATCATGCCTCTCCAACCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGG
26888576 AGTTCATCCCCAGTCTAAGCATACAGAGTCCATTCCCAGTCTAAGATCAGA-TCGGACCAAAGGT
326 AGTTCATCCCCAGTCTAAGCATACAGAGTCCATTCCCAGTCTAAGATCAGACT-GGACCAAAGGT
* * * * *
26888640 TACAGCAGTAAGACCGACAGCACATC-GGGGGGACCGGACTAATCCCCGGCTTGTGCATTCTACC
390 TACAGCAGCAAGACCGACAGCAC-GCAGGGGGGACCGGACCAATCCCCAGCTTGCGCATTCTACC
* * ** * * *
26888704 TCTTTGGCCGGCTGAGCGCCCGTAC-CCTCGTTTTGTGTGTTGGCTTTGGCATAGGGAGCTCATT
454 TCTTCGGCCGGCTGAGCGCCCGCACGCC-CGTTTCATGGGTTAGCTTAGGCATAGGGAGCTCATT
* * * ** *
26888768 CCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGACAGCGGGATTGACAGCACGCAGAGG-GCGA
518 CCATGTCTAAGCCCCAGCCGGATCGAAGGTTGTGACAACAGGACCGACAGCACACAGAGGAG-GA
* * * *
26888832 CCAAGCCAATCCCTAG-TTTGTGCATTATGCCTCTTCGACCGGCTCAGCACCCGTACTCTCGTTT
582 CCAAGCCAATCCC-AGACTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTT
26888896 CGTGGGTTGACTTAT
646 CGTGGGTTGACTTAT
* ** **
26888911 GCATACGGAGTTCATTCAAAGTCTAAGATCGGA-TCGGACCAAGGGTTACGGTAGCAGGATCGGT
1 GCATACGGAGTTCATTCAAAGCCTAAGATCGGACT-GGACCAAGGGTTACGACAGCAGGATCGAC
* * *
26888975 AACATGCAAGGGGGATCGGG-CTGATCCCCAGCTTGCGTATTCTGCCTC-CCTGACCGACTGAGT
65 AACACGCAAGGGGGATCGGGTC-GATCCCCAGCTTGCGCATTCTGCCTCTCCTG-CCGACTGAGC
* * ** * * *
26889038 GCCCGTACGTTTGTTTTGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGTCCTAG-
128 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGC
* * * *
26889102 CGGAACTGAGGTTTGTGGAAGCAGGACCGGCAGTGGGATCGGCAGAATGTAGAGGGGGACCGAGC
193 CGG-ACTGAGGGTTGTGGAAGCAGGACC-G-A-T---A---GC---ACGCAGAGGGGGATCGAGC
** * * *
26889167 TGATCCTC-GACTTACGCATTATGCCTCTCCGACCGGCCTTTCTGGTCGGCTGAGCGCCCACACA
245 CAATCCTCAG-CTTACGCATCATGCCTCTCC-A--------AC----CGGCTGAGCGCCCGCACA
* * * * *
26889231 CTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTTTAAGCATACGGAGTTCATTC
296 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTCCATTC
* * * * *** ** * ** *
26889296 CCAGTCTAAGATC-GAACCGGATCGAGGGTTGTGGCAGCGGGATCGGA-AGCACATAGGGGGG-T
361 CCAGTCTAAGATCAG-ACTGGACCAAAGGTTACAGCAGCAAGA-CCGACAGCACGCAGGGGGGAC
** * * * * * ** *
26889358 C-GAGCTGATCTCC-GACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGTTCATTT
424 CGGA-CCAATCCCCAG-CTTGCGCATTCTACCTCTTCGGCCGGCTGAGCGCCCGCACGCCCGTTT
* * * * * *
26889421 CGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCCAGTCGGATCGAGGGTTGT
487 CATGGGTTAGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGCCGGATCGAAGGTTGT
* * * * * * ** *** * *
26889485 CATAGCAGGACCAATAGCGGGATAGGCAGCACGCAGAGGGGGATCGGGTTGATCCCCGACTTGTG
551 GACAACAGGA-C-----C--G--A--CAGCACACAGAGGAGGACCAAGCCAATCCCAGACTTGCG
* * * * *
26889550 CATTATGCCTCTAAGGCAGGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGCTTCATGGGTTGA
604 CATTATG-C-CT---------CT-T-CGACCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGA
*
26889615 CTTAG
656 CTTAT
* * * *
26889620 GCATACAGAGTTCATCCCCAGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT
1 GCATACGGAG-T--T---CA-T-T---CA-A---AG--------C---CTAAGATCGGACTGGAC
** * * * * * * *
26889685 TGAGGGTTGCGACAGCAGGATCGGCAGCACGC-AGGGGTGACCGAGCCGATCCTCAGCTTGCGCA
40 CAAGGGTTACGACAGCAGGATCGACAACACGCAAGGGG-GATCGGGTCGATCCCCAGCTTGCGCA
* ** * * *
26889749 TTCTGCCTCTCC-GACCGGCTGAGCATCCGTACGTTCGTTTCGTGGGTTGGCTTAGGCATACAGA
104 TTCTGCCTCTCCTG-CCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGA
* * ** *
26889813 GTACATTCCACGTCTAAGCCCCGGCCGGACCAAGGGTTGTGGTAGCAGGACTGGCAGCAGGATTG
168 GTACATTCCACATCTAAGCCCCAGCCGGACTGAGGGTTGTGGAAGCAGGA----C--C------G
* * ** * * *
26889878 ATAGCACGCAGAGGAGGACCGAGCTGATCCCCGACTTGAGCATTATGCCTCTCCGATCGGCCTCT
221 ATAGCACGCAGAGGGGGATCGAGCCAAT---C--C-TCAGC-TTACG-C-AT-C-AT--GCCTCT
* * ** *
26889943 CCAGCCGGTTGAGCGCCCGCATTCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCC
273 CCAACCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
* * * * ** ** * *** * *
26890008 GTCTAAGCAAAC-GAAGTTCATTCCCAGTGTAAGATCGGACCAGACTGAGGGTTGTGGTAGCAGG
338 GTCTAAGCATACAG-AGTCCATTCCCAGTCTAAGATCAGACTGGACCAAAGGTTACAGCAGCAAG
** ** * ** * * * * * * * *
26890072 ATTGGTAGCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTTTGCTTCTCCGACC-GCC
402 ACCGACAGCACGCAGGGGGGACCGGACCAATCCCCAGCTTGCGCATTCTACCTCTTCGGCCGGCT
* * *
26890136 GAGCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGG-GCTCATTCCATGTCTAAGCCC
467 GAGCGCCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCC
* * * * * * ** * ** ** *
26890200 CAACCAGACCGAGGGTTGTGGCTACAGGACCGACAGCATGCAGAGTG-GGATCGGGCTGATCCCC
532 CAGCCGGATCGAAGGTTGTGACAACAGGACCGACAGCACACAGAG-GAGGACCAAGCCAATCCCA
* * * * *
26890264 GGCTTGCGCATTATGCCTCTTCGATCGGCTCAGCACCCGTACGCTCGTTTCGTGGGTCGACGTAT
596 GACTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAT
* ** * * * *
26890329 GCATATGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCGAGGGCTACGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCAAAGCCTAAGATCGGACT-GGACCAAGGGTTACGACAGCAGGATCGAC
* * ** * * * * *
26890393 AGCA--TATAGGGGGATCGGGTCGATCCCCAGCTTGCATATTTTGCCTCTTCGGTCGACTGAGCA
65 AACACGCA-AGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCTGCCGACTGAGCG
* * * *
26890456 CCCGCACGCTCGTTTCGTGGTTTGGCTTAGGCATACGGAGTTCATTCCA
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCA
26890505 TGCCTAAGCA
Statistics
Matches: 1787, Mismatches: 327, Indels: 283
0.75 0.14 0.12
Matches are distributed among these distances:
659 13 0.01
660 492 0.28
661 4 0.00
662 2 0.00
663 3 0.00
665 1 0.00
666 2 0.00
669 2 0.00
671 3 0.00
672 41 0.02
673 33 0.02
677 3 0.00
679 1 0.00
681 2 0.00
682 82 0.05
683 47 0.03
684 111 0.06
685 297 0.17
686 5 0.00
692 1 0.00
694 3 0.00
695 1 0.00
696 34 0.02
697 2 0.00
698 3 0.00
701 1 0.00
702 1 0.00
703 2 0.00
706 1 0.00
707 2 0.00
708 2 0.00
709 89 0.05
710 2 0.00
711 2 0.00
712 1 0.00
715 2 0.00
716 1 0.00
717 1 0.00
720 4 0.00
721 2 0.00
722 40 0.02
723 1 0.00
724 3 0.00
726 1 0.00
728 1 0.00
733 1 0.00
734 45 0.03
735 328 0.18
736 33 0.02
737 2 0.00
738 3 0.00
739 2 0.00
740 1 0.00
741 4 0.00
742 5 0.00
743 1 0.00
744 2 0.00
745 1 0.00
746 3 0.00
747 1 0.00
748 8 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (660 bp):
GCATACGGAGTTCATTCAAAGCCTAAGATCGGACTGGACCAAGGGTTACGACAGCAGGATCGACA
ACACGCAAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCTGCCGACTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGCCGG
ACTGAGGGTTGTGGAAGCAGGACCGATAGCACGCAGAGGGGGATCGAGCCAATCCTCAGCTTACG
CATCATGCCTCTCCAACCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGG
AGTTCATCCCCAGTCTAAGCATACAGAGTCCATTCCCAGTCTAAGATCAGACTGGACCAAAGGTT
ACAGCAGCAAGACCGACAGCACGCAGGGGGGACCGGACCAATCCCCAGCTTGCGCATTCTACCTC
TTCGGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGCTCATTCCA
TGTCTAAGCCCCAGCCGGATCGAAGGTTGTGACAACAGGACCGACAGCACACAGAGGAGGACCAA
GCCAATCCCAGACTTGCGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACGCTCGTTTCGTGG
GTTGACTTAT
Found at i:26889289 original size:26 final size:26
Alignment explanation
Indices: 26889253--26889305 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26889243 GTTGACTTAG
*
26889253 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26889279 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26889305 G
1 G
26889306 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26889647 original size:26 final size:26
Alignment explanation
Indices: 26889617--26889670 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
26889607 TGGGTTGACT
26889617 TAGGCATACAGAGTTCATCCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAGTC
* *
26889643 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATCCCCAGTC
26889669 TA
1 TA
26889671 AGATCAGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATCCCCAGTC
Found at i:26889910 original size:368 final size:366
Alignment explanation
Indices: 26888911--26890236 Score: 1430
Period size: 368 Copynumber: 3.6 Consensus size: 366
26888901 GTTGACTTAT
** * * * *
26888911 GCATACGGAGTTCATTCAAAGTCTAAGATCGGATCGGACCAAGGGTTACGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
* * * * * * * *
26888976 ACATGCAAGGGGGATCGGGCTGATCCCCAGCTTGCGTATTCTGCCTC-CCTGACCGACTGAGTGC
66 GCACGC-AGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCC-GACCGGCTGAGCGC
* * * * * *
26889040 CCGTACGTTTGTTTTGTGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGTCCTAG-CG
129 CCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCCG
* * * * * * * *
26889104 GAACTGAGGTTTGTGGAAGCAGGACCGGCAGTGGGATCGGCAGAATGTAGAGGGGGACCGAGCTG
194 G-ACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATAGGCAGCACGCAGAGGGGGACCGAGCTG
* * * * *
26889169 ATCCTCGACTT-ACGCATTATGCCTCTCCGACCGGCCTTTCTGGTCGGCTGAGCGCCCACACACT
258 ATCCCCGACTTGA-GCATTATGCCTCTCCGA-CGGCCTCTCCGATCGGCTGAGCGCCCGCACACT
* * *
26889233 CGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTTTAA
321 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * *
26889279 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGTGGCAGCGGGATCGGAA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
** ** * * * **
26889344 GCACATAGGGGGGTCGAGCTGATCTCC-GACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
66 GCACGCAGGGGGACCGAGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * *
26889408 CGCACGTTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGG
130 CGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCCGG
* ** *** * * *
26889473 ATCGAGGGTTGTCATAGCAGGACCAATAGCGGGATAGGCAGCACGCAGAGGGGGATCGGGTTGAT
195 ACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATAGGCAGCACGCAGAGGGGGACCGAGCTGAT
* ** * * *
26889538 CCCCGACTTGTGCATTATGCCTCTAAGGCAGGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGC
260 CCCCGACTTGAGCATTATGCCTCTCCGAC-GGCCTCTCCGATCGGCTGAGCGCCCGCACACTCGT
* *
26889603 TTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAG
324 TTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* ** * *
26889646 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGACAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
* **
26889711 GCACGCAGGGGTGACCGAGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCATC
66 GCACGCAGGGG-GACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* *
26889776 CGTACGTTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCGGCCGG
130 CGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCCGG
* * * * ** *
26889841 ACCAAGGGTTGTGGTAGCAGGACTGGCAGCAGGATTGATAGCACGCAGAGGAGGACCGAGCTGAT
195 ACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATAGGCAGCACGCAGAGGGGGACCGAGCTGAT
* * **
26889906 CCCCGACTTGAGCATTATGCCTCTCCGATCGGCCTCTCC-AGCCGGTTGAGCGCCCGCATTCTCG
260 CCCCGACTTGAGCATTATGCCTCTCCGA-CGGCCTCTCCGA-TCGGCTGAGCGCCCGCACACTCG
*
26889970 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCCGTCTAA
323 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * * * * *
26890014 GCAAACGAAGTTCATTCCCAGTGTAAGATCGGACCAGACTGAGGGTTGTGGTAGCAGGATTGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
* * * * * * *
26890079 GCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTTTGCTTCTCCGACC-GCCGAGCGCC
66 GCACGCA-GGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * * * *
26890143 CGCACG-CCTGTTTCGTGGGTTGGCTTAGGCATA-GGGGCT-CATTCCATGTCTAAGCCCCAACC
130 CGCACGTTC-GTTTCGTGGGTTGGCTTAGGCATACAGAG-TACATTCCACGTCTAAGCCCCAGCC
* *
26890205 AGACCGAGGGTTGTGGCTA-CAGGACCGACAGC
193 GGACCGAGGGTTGTGG-TAGCAGGACCGGCAGC
26890237 ATGCAGAGTG
Statistics
Matches: 796, Mismatches: 149, Indels: 28
0.82 0.15 0.03
Matches are distributed among these distances:
366 50 0.06
367 341 0.43
368 399 0.50
369 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (366 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
GCACGCAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GCACGTTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCCGGA
CCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATAGGCAGCACGCAGAGGGGGACCGAGCTGATC
CCCGACTTGAGCATTATGCCTCTCCGACGGCCTCTCCGATCGGCTGAGCGCCCGCACACTCGTTT
CATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:26890512 original size:157 final size:156
Alignment explanation
Indices: 26890078--26890512 Score: 441
Period size: 157 Copynumber: 2.8 Consensus size: 156
26890068 CAGGATTGGT
* * * * * *
26890078 AGCATGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTTTGCTTCTCCGACCGCCGAGCGC
1 AGCAT-CAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTTCGATCGCTGAGCAC
* * *
26890142 CCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGGCTCATTCCATGTCTAAGCCCCAACCA
65 CCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGACCCAACCA
* **
26890206 GACCGAGGGTTGTGGCTACAGGACCGAC
129 GACCGAGGGCTACGGCTACAGGACCGAC
* * *
26890234 AGCATGCAGAGTGGGATCGGG-CTGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGC
1 AGCAT-CAGAGGGGGATCGGGTC-GATCCCCGGCTTGCGCATTTTGCCTCTTCGATC-GCTGAGC
* * * * * * **
26890298 ACCCGTACGCTCGTTTCGTGGGTCGACGTATGCATATGGAGTTCATTCCCA-GTCTAAGATCGGA
63 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATT-CCATGTCTAAGACCCAA
* * *
26890362 TCGGACCGAGGGCTACGGC-AGCAGGATCGAC
126 CCAGACCGAGGGCTACGGCTA-CAGGACCGAC
* * ** *
26890393 AGCAT-ATAGGGGGATCGGGTCGATCCCCAGCTTGCATATTTTGCCTCTTCGGTCGACTGAGCAC
1 AGCATCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTTCGATCG-CTGAGCAC
* *
26890457 CCGCACGCTCGTTTCGTGGTTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAG
65 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAG
26890513 CATATGGAGC
Statistics
Matches: 227, Mismatches: 42, Indels: 19
0.79 0.15 0.07
Matches are distributed among these distances:
156 14 0.06
157 129 0.57
158 35 0.15
159 46 0.20
160 3 0.01
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.23
Consensus pattern (156 bp):
AGCATCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTTTGCCTCTTCGATCGCTGAGCACC
CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGACCCAACCAGA
CCGAGGGCTACGGCTACAGGACCGAC
Found at i:26891133 original size:26 final size:26
Alignment explanation
Indices: 26891096--26891148 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26891086 GTTGACTTAG
*
26891096 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
26891122 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26891148 G
1 G
26891149 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26892303 original size:158 final size:158
Alignment explanation
Indices: 26892076--26892412 Score: 383
Period size: 158 Copynumber: 2.1 Consensus size: 158
26892066 CTAAGAATAT
* * * * * *
26892076 GGAGTTCATTCCCCGTCTAAGATCGGACCGGACCGAAGGTTGTGGTAGTAGAATCGGCAGCACGT
1 GGAGTTCATTCACAGTCTAAGATCGGACCAGACCGAAGGTTGCGGTAGCAGAATCGGCAGCACGC
* * * * * * *
26892141 AGGGGGGACCTAGTCGGGCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTT-AGCGCCCGCAC
66 AGGGGGGACCGAGCCGAGCCCCGACTTGCACATTATACCTCTTCGGCCAG-TTGAGCGCCCGCAC
*
26892205 GCTCGTTTCGTGGGTTGACTTATGCATAC
130 GCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
26892234 GGAGTTCATTCAGAGTCTAAGATCGGACCAGACC-AAGGTTTGCGGTAGCAGGATCGGTAGCATG
1 GGAGTTCATTCACAGTCTAAGATCGGACCAGACCGAAGG-TTGCGGTAGCAGAATCGGCAGCACG
* * * * * * *
26892298 CAGGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTTCGGCCAGTTGAGCGCCCGTAT
65 CAGGGGGGACCGAGCCGAGCCCCGACTTGCACATTATACCTCTTCGGCCAGTTGAGCGCCCGCAC
*
26892363 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
130 GCTCGTTTCGTGGGTTGACTTAGGCATAC
*
26892392 GGAGTACATTCCACA-TCTAAG
1 GGAGTTCATT-CACAGTCTAAG
26892413 CCCTAGCCGG
Statistics
Matches: 148, Mismatches: 28, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
157 6 0.04
158 139 0.94
159 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GGAGTTCATTCACAGTCTAAGATCGGACCAGACCGAAGGTTGCGGTAGCAGAATCGGCAGCACGC
AGGGGGGACCGAGCCGAGCCCCGACTTGCACATTATACCTCTTCGGCCAGTTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATAC
Found at i:26892607 original size:26 final size:26
Alignment explanation
Indices: 26892570--26892622 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26892560 GTTGACTTAG
*
26892570 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
26892596 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26892622 G
1 G
26892623 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26892780 original size:526 final size:526
Alignment explanation
Indices: 26891775--26892770 Score: 1278
Period size: 526 Copynumber: 1.9 Consensus size: 526
26891765 CAGGACGTAA
* * * * *
26891775 GGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTACCTTTTCGGTCGGCTGAGCGCCCGCACACT
1 GGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTTCGGCCAGCTGAGCGCCCGCACACT
* *
26891840 CGTTTCGTGGGTTGGCTTACGCATACAGAGTACATTTCACGTCTAAGCCCCAGCAGGACCGAGGG
66 CGTTTCGTGGGTTGGCTTACGCATACAGAGTACATTCCACATCTAAGCCCCAGCAGGACCGAGGG
* * * * * * * *
26891905 TTGTGGCAGCAAGATCGGTAGTGAGATCGACAACACGTAGAGGGGGACCAGGCTGATCCTCGGCT
131 TTATGACAGCAAGACCGGTAGCGAGATCGACAACAAGCAGAAGGGGACCAGGCTGATCCTCAGCT
* **
26891970 TGCACATTATGCCTCTCCGACCGACCTCTCCGATCGACTGAGCGTCCAAATGCTCATTTCATGGG
196 TGCACATTATGCCTCTCCGACCGACCTCTCCGATCGACTGAGCGTCCAAACGCTCATTTCATCAG
* * * *
26892035 TTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGAATATGGAGTTCATTCCCCGTCTAAGATC
261 TTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGAATACGAAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
26892100 GGACCGGACCGAAGGTTGTGGTAGTAGAATCGGCAGCACGTAGGGGGGACCTAGTCGGGCCCCGA
326 GAACCGGACCGAAGGTTGTGGCAGCAGAATAGGCAGCACGCAGGGGGGACCGAGCCGAGCCCCGA
* * * * * * *
26892165 CTTGCGCATTATGCCTCTTCGGTCGGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGC
391 CTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACACCCGTTTCATGGGTCGACTTAGGC
*
26892230 ATACGGAGTTCATTCAGAGTCTAAGATCGGACCAGACCAAGGTTTGCGGTAGCAGGATCGGTAGC
456 ATACGGAGCTCATTCAGAGTCTAAGATCGGACCAGACCAAGGTTTGCGGTAGCAGGATCGGTAGC
26892295 ATGCAG
521 ATGCAG
* * **
26892301 GGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTTCGGCCAGTTGAGCGCCCGTATGCT
1 GGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTTCGGCCAGCTGAGCGCCCGCACACT
* * * * *
26892366 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCTAGCCGGATCGAGGG
66 CGTTTCGTGGGTTGGCTTACGCATACAGAGTACATTCCACATCTAAGCCCCAGCAGGACCGAGGG
* ** * * *
26892431 TTATGACAGCAAGACCGGTAGCGGGATCGGTAGCAAGCAGAAGGGGATCGGGCTGATCCTCAGCT
131 TTATGACAGCAAGACCGGTAGCGAGATCGACAACAAGCAGAAGGGGACCAGGCTGATCCTCAGCT
** * * * ** * *
26892496 TGTGCATTATGCCTCTCCGATCGATCTCTCTGATCGACTGAGCGTCCGCACGCTCGTTTCGTCAG
196 TGCACATTATGCCTCTCCGACCGACCTCTCCGATCGACTGAGCGTCCAAACGCTCATTTCATCAG
* *
26892561 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
261 TTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGAATACGAAGTTCATTCCCAGTCTAAGATC
* * * * * *
26892626 GAACCGGGCC-AAGGGTTGTGGCAGCAGGATAGGTAGCACGCAGGGGTGACCGGGCCGATCCCC-
326 GAACCGGACCGAA-GGTTGTGGCAGCAGAATAGGCAGCACGCAGGGGGGACCGAGCCGAGCCCCG
* * *
26892689 AGCTTGTGCATTCTGCCTCTCCGG-CTGGCTGAGCGCCCGCACACCCGTTTCATGGGTCGGCTTA
390 A-CTTGCGCATTATGCCTCTCCGGTC-GGCTGAGCGCCCGCACACCCGTTTCATGGGTCGACTTA
*
26892753 GGCATAGGGAGCTCATTC
453 GGCATACGGAGCTCATTC
26892771 CATGTCTAAG
Statistics
Matches: 393, Mismatches: 74, Indels: 6
0.83 0.16 0.01
Matches are distributed among these distances:
525 4 0.01
526 389 0.99
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (526 bp):
GGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTTCGGCCAGCTGAGCGCCCGCACACT
CGTTTCGTGGGTTGGCTTACGCATACAGAGTACATTCCACATCTAAGCCCCAGCAGGACCGAGGG
TTATGACAGCAAGACCGGTAGCGAGATCGACAACAAGCAGAAGGGGACCAGGCTGATCCTCAGCT
TGCACATTATGCCTCTCCGACCGACCTCTCCGATCGACTGAGCGTCCAAACGCTCATTTCATCAG
TTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGAATACGAAGTTCATTCCCAGTCTAAGATC
GAACCGGACCGAAGGTTGTGGCAGCAGAATAGGCAGCACGCAGGGGGGACCGAGCCGAGCCCCGA
CTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACACCCGTTTCATGGGTCGACTTAGGC
ATACGGAGCTCATTCAGAGTCTAAGATCGGACCAGACCAAGGTTTGCGGTAGCAGGATCGGTAGC
ATGCAG
Found at i:26893778 original size:158 final size:158
Alignment explanation
Indices: 26893551--26893887 Score: 383
Period size: 158 Copynumber: 2.1 Consensus size: 158
26893541 CTAAGAATAT
* * * * * *
26893551 GGAGTTCATTCCCCGTCTAAGATCGGACCGGACCGAAGGTTGTGGTAGTAGAATCGGCAGCACGT
1 GGAGTTCATTCACAGTCTAAGATCGGACCAGACCGAAGGTTGCGGTAGCAGAATCGGCAGCACGC
* * * * * * *
26893616 AGGGGGGACCTAGTCGGGCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTT-AGCGCCCGCAC
66 AGGGGGGACCGAGCCGAGCCCCGACTTGCACATTATACCTCTTCGGCCAG-TTGAGCGCCCGCAC
*
26893680 GCTCGTTTCGTGGGTTGACTTATGCATAC
130 GCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
26893709 GGAGTTCATTCAGAGTCTAAGATCGGACCAGACC-AAGGTTTGCGGTAGCAGGATCGGTAGCATG
1 GGAGTTCATTCACAGTCTAAGATCGGACCAGACCGAAGG-TTGCGGTAGCAGAATCGGCAGCACG
* * * * * * *
26893773 CAGGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTTCGGCCAGTTGAGCGCCCGTAT
65 CAGGGGGGACCGAGCCGAGCCCCGACTTGCACATTATACCTCTTCGGCCAGTTGAGCGCCCGCAC
*
26893838 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
130 GCTCGTTTCGTGGGTTGACTTAGGCATAC
*
26893867 GGAGTACATTCCACA-TCTAAG
1 GGAGTTCATT-CACAGTCTAAG
26893888 CCCTAGCGAA
Statistics
Matches: 148, Mismatches: 28, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
157 6 0.04
158 139 0.94
159 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GGAGTTCATTCACAGTCTAAGATCGGACCAGACCGAAGGTTGCGGTAGCAGAATCGGCAGCACGC
AGGGGGGACCGAGCCGAGCCCCGACTTGCACATTATACCTCTTCGGCCAGTTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATAC
Found at i:26894074 original size:26 final size:26
Alignment explanation
Indices: 26894045--26894097 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26894035 GTTGACTTAG
*
26894045 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26894071 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26894097 G
1 G
26894098 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26894167 original size:526 final size:526
Alignment explanation
Indices: 26893252--26894245 Score: 1280
Period size: 526 Copynumber: 1.9 Consensus size: 526
26893242 GGACGTAAGA
* * * * *
26893252 GGGATCGAGCCGATCCCTGGCTTGCGCATTCTACCTTTTCGGTCGGCTGAGCGCCCGCACACTCG
1 GGGATCGAGCCGATCCCCGGCTTGCACATTCTACCTCTTCGGCCAGCTGAGCGCCCGCACACTCG
* * *
26893317 TTTCGTGGGTTGGCTTACGCATACAGAGTACATTTCACGTCTAAGCCCCAGCAGGACCGAGGGTT
66 TTTCGTGGGTTGGCTTACGCATACAGAGTACATTCCACATCTAAGCCCCAGCAGAACCGAGGGTT
* * * * * * * *
26893382 GTGGCAGCAAGATCGGTAGTGAGATCGACAACACGTAGAGGGGGACCAGGCTGATCCTCGGCTTG
131 ATGGAAGCAAGATCGATAGTGAGATCGACAACACGCAGAAGGGGACCAAGCTGATCCCCGGCTTA
* *
26893447 CACATTATGCCTCTCCGACCGACCTCTCCGATCGACTGAGCGTCCAAATGCTCATTTCATGGGTT
196 CACATTATGCCTCTCCGACCGACCTCTCCGATCGACTGAGCGCCCAAACGCTCATTTCATGGGTT
* * * *
26893512 GACTTAGGCATACAGAGTTCATCCCTAGTCTAAGAATATGGAGTTCATTCCCCGTCTAAGATCGG
261 GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCGA
* * * * * *
26893577 ACCGGACCGAAGGTTGTGGTAGTAGAATCGGCAGCACGTAGGGGGGACCTAGTCGGGCCCCGACT
326 ACCAGACCGAAGGTTGTGGCAGTAGAATCGGCAGCACGCAGGGGGGACCAACTCGAGCCCCGACT
* *
26893642 TGCGCATTATGCCTCTTCGGTCGGCTT-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCA
391 TGCGCATTATGCCTCTTCGGTCGG-TTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
*
26893706 TACGGAGTTCATTCAGAGTCTAAGATCGGACCAGACCAAGGTTTGCGGTAGCAGGATCGGTAGCA
455 TACGGAGTACATTCAGAGTCTAAGATCGGACCAGACCAAGGTTTGCGGTAGCAGGATCGGTAGCA
26893771 TGCAGGG
520 TGCAGGG
* * * **
26893778 GGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTTCGGCCAGTTGAGCGCCCGTATGCTCG
1 GGGATCGAGCCGATCCCCGGCTTGCACATTCTACCTCTTCGGCCAGCTGAGCGCCCGCACACTCG
* * *
26893843 TTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCTAGC-GAAACCGAGGGT
66 TTTCGTGGGTTGGCTTACGCATACAGAGTACATTCCACATCTAAGCCCCAGCAG-AACCGAGGGT
* * * * *
26893907 TATGGAAGTAGGATCGATAGTG-GAATC-AGTAGCACGCAGAAGGGGATCAAGCTGATCCCCGGC
130 TATGGAAGCAAGATCGATAGTGAG-ATCGA-CAACACGCAGAAGGGGACCAAGCTGATCCCCGGC
* * * * ** ** * *
26893970 TTACGCATTATGCCTCTCCGATCGGCCTCTCCGGTCGGTTGAGCGCCCGTACGCTCGTTTCGTGG
193 TTACACATTATGCCTCTCCGACCGACCTCTCCGATCGACTGAGCGCCCAAACGCTCATTTCATGG
* * *
26894035 GTTGACTTAGGCATACGGAGTTCATCCCCAGTGTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
258 GTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGAT
** * * *
26894100 CGAACCAGA-TTAAGGGTTGTGGCAGTAGGATTGGCAGCACGCAGGGGGGACCAAACT-GATCCC
323 CGAACCAGACCGAA-GGTTGTGGCAGTAGAATCGGCAGCACGCAGGGGGGACC-AACTCGAGCCC
* * * * * *
26894163 CGACTTGTGCATTCTGCCTTTTCGGTCGGTTGAGCGCCCGCATGCTTGTTTCATGGGTTGGCTTA
386 CGACTTGCGCATTATGCCTCTTCGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
26894228 GGCATACGGAGTACATTC
451 GGCATACGGAGTACATTC
26894246 CATGTCTAAA
Statistics
Matches: 394, Mismatches: 68, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
525 7 0.02
526 385 0.98
527 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (526 bp):
GGGATCGAGCCGATCCCCGGCTTGCACATTCTACCTCTTCGGCCAGCTGAGCGCCCGCACACTCG
TTTCGTGGGTTGGCTTACGCATACAGAGTACATTCCACATCTAAGCCCCAGCAGAACCGAGGGTT
ATGGAAGCAAGATCGATAGTGAGATCGACAACACGCAGAAGGGGACCAAGCTGATCCCCGGCTTA
CACATTATGCCTCTCCGACCGACCTCTCCGATCGACTGAGCGCCCAAACGCTCATTTCATGGGTT
GACTTAGGCATACAGAGTTCATCCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCGA
ACCAGACCGAAGGTTGTGGCAGTAGAATCGGCAGCACGCAGGGGGGACCAACTCGAGCCCCGACT
TGCGCATTATGCCTCTTCGGTCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
ACGGAGTACATTCAGAGTCTAAGATCGGACCAGACCAAGGTTTGCGGTAGCAGGATCGGTAGCAT
GCAGGG
Found at i:26894385 original size:368 final size:366
Alignment explanation
Indices: 26893703--26894882 Score: 1325
Period size: 368 Copynumber: 3.2 Consensus size: 366
26893693 GTTGACTTAT
** * * *
26893703 GCATACGGAGTTCATTCAGAGTCTAAGATCGGACCAGACCAAGGTTTGCGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGATCGGCA
* * * * ** *
26893768 GCATGCAGGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTACCTCTTCGGCCAGTTGAGCGCC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTGCCTCTTCGGCCAGTTGAGCGCC
* * *
26893833 CGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCTAGC-GA
131 CGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCTG-
* * * * * * * ** *
26893897 AACCGAGGGTTATGGAAGTAGGATCGATAGTGGAATCA-GTAGCACGCAGAAGGGGATCAAGCTG
195 GACCGAGGGTTGT-GAAGCAGGA-CGACAGCGGGAT-AGGTAGCACGCAGAGGGGGATCGGGTTG
* * * * * * *
26893961 ATCCCCGGCTTACGCATTATGCCTCTCCGATCGGCCTCTCCGGTCGGTTGAGCGCCCGTACGCTC
257 ATCCCTGACTTGCACATTATGCCTCTCCGACCGGCCTCTCCGGTCGGTTGAGCGCCCGCATGCTC
*
26894026 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTGTAA
322 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
** * * * *
26894071 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGATTAAGGGTTGTGGCAGTAGGATTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTTGCGGTAGCAGGATCGGC
* * * * * *
26894135 AGCACGCAGGGGGGACCAAACTGATCCCCGACTTGTGCATTCTGCCTTTTCGGTCGGTTGAGCGC
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTGCCTCTTCGGCCAGTTGAGCGC
* * * *
26894200 CCGCATGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAACCCCAGCTG
130 CCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCTG
* * * *
26894265 GATCGAGGGTTGTCACAGCAGGACCGACAGCGGGATAGGCAGCACGTAGAGGGGGATCGGGTTGA
195 GACCGAGGGTTGTGA-AGCAGGA-CGACAGCGGGATAGGTAGCACGCAGAGGGGGATCGGGTTGA
* * * * *
26894330 TCCCTAACTTGCACATTATGCCTCT-CAAGCCGGCCTCTCCGGTCGGCTAAGCGCCCGCATGCTT
258 TCCCTGACTTGCACATTATGCCTCTCCGA-CCGGCCTCTCCGGTCGGTTGAGCGCCCGCATGCTC
* *
26894394 GCTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
322 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * *
26894439 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGATCGGCA
** * * * * * *
26894504 GCACATAGGGGTGACCGAGCCGATCCTCAATTTGTGCATTCTGCCTCTCCGGCCAGCTGAGCGCC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTGCCTCTTCGGCCAGTTGAGCGCC
* * * * *
26894569 TGCACGCTCGTTTCGTGGGTTGGCTTAGGCCTACAGAGTACATTCCCCGTCTAAGCCCCAG-TCG
131 CGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCT-G
* * * * * * * *
26894633 GACCGAGGGTTGTGGTAGCAAGACTAGCAGCGGGATCGATAGCACACAGAGAGGGACCGGGTTGA
195 GACCGAGGGTTGT-GAAGCAGGACGA-CAGCGGGATAGGTAGCACGCAGAGGGGGATCGGGTTGA
*
26894698 T-CCTGACTTG-AGCATTATGCCTCTCCGACTGGCCTCT-CGAGTCGGTTGAGCGCCCGCATGCT
258 TCCCTGACTTGCA-CATTATGCCTCTCCGACCGGCCTCTCCG-GTCGGTTGAGCGCCCGCATGCT
*
26894760 CGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCCA-TCTAA
321 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCCAGTCTAA
* * * * *
26894806 GCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATTGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGATCGGCA
*
26894871 GCATGCAGGGGG
66 GCACGCAGGGGG
26894883 ATCGACTTAT
Statistics
Matches: 676, Mismatches: 123, Indels: 27
0.82 0.15 0.03
Matches are distributed among these distances:
366 3 0.00
367 159 0.24
368 512 0.76
369 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (366 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGATCGGCA
GCACGCAGGGGGGACCGAGCCGATCCCCGACTTGTGCATTCTGCCTCTTCGGCCAGTTGAGCGCC
CGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCTGG
ACCGAGGGTTGTGAAGCAGGACGACAGCGGGATAGGTAGCACGCAGAGGGGGATCGGGTTGATCC
CTGACTTGCACATTATGCCTCTCCGACCGGCCTCTCCGGTCGGTTGAGCGCCCGCATGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:26894442 original size:26 final size:26
Alignment explanation
Indices: 26894413--26894465 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26894403 GTTGACTTAG
26894413 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
26894439 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26894465 G
1 G
26894466 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26895264 original size:26 final size:26
Alignment explanation
Indices: 26895235--26895287 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26895225 GTTGACTTAG
*
26895235 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
26895261 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26895287 G
1 G
26895288 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26895290 original size:455 final size:453
Alignment explanation
Indices: 26894439--26895336 Score: 1148
Period size: 455 Copynumber: 2.0 Consensus size: 453
26894429 CCCAGTCTAA
* * *
26894439 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGGCAGCAGGATCGATA
* * * *
26894504 GCACATAGGGGTGACCGAGCCGATCCTCAATTTGTGCATTCTGCCTCTCCGGCCAGCTGAGCGCC
66 GCACATAGGGGTGACCGAGCCGATCCCCAACTTGTGAATTCTGCCTCTCCGACCAGCTGAGCGCC
* * ** * * *
26894569 TGCACGCTCGTTTCGTGGGTTGGCTTAGGCCTACAGAGTACATTCCCCGTCTAAGCCCCAGTCGG
131 CGCACGCTCATTTCGCAGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGTCGG
* * * * * * *
26894634 ACCGAGGGTTGTGGTAGCAAGACTAGCAGCGGGATCGATAGCACACAGAGAGGGACCGGGTTGAT
196 ACCGAGGGTTATGGCAGCAAGACCAGCAGCGGGATCGACAACACACAGAGAGGGACCAGGCTGAT
* ** * * * * **
26894699 CCTGACTTGAGCATTATGCCTCTCCGACTGGCCTCTCGAGTCGGTTGAGCGCCCGCATGCTCGTT
261 CCTCACTTGAGCATTATGCCTCTCCGACCAGCCTCTCGAGCCGGCTGAACGCCCGAACACTCGTT
*** *
26894764 TTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCCATCTAAGCATACAGAGTTCATTCCCAGTG
326 CCATGGGTTGACTTAGGCATACGGAGTTCATCCCCCATCTAAGCATACAGAGTTCATTCCCAGTC
*
26894829 TAAGATC-AGACCGGACCGAGGGTTGCGGTAGCAGGATTGGCAGCATGCAGGGGGATCGACTTAT
391 TAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCA-GCAGGGGGATCGACTTAT
*
26894893 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGA-CTGAGGGTTGCGGCAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATC-GAGGGTTGCGGCAGCAGGATCGAT
* * * * * *
26894957 AGCACGTAAGGGG-GACCGGGTCGATCCCCAGCTTGT-AATTCTGCCTCTCCGATCAGCTGAGCT
65 AGCACAT-AGGGGTGACCGAGCCGATCCCCAACTTGTGAATTCTGCCTCTCCGACCAGCTGAGCG
* *
26895020 CCCGTACGCTCATTTCGCAGGTTGGCTTAGGCATACAGAGTGCATTCCACATCTAAGCCCCAG-C
129 CCCGCACGCTCATTTCGCAGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGTC
* * * * * * *
26895084 AGGATCGAGGGTTATGGCAGCAAGACCGGTAGTGGGATCGGCAACACATAGAGGGGGGACCAGGC
194 -GGACCGAGGGTTATGGCAGCAAGACCAGCAGCGGGATCGACAACACACAGA-GAGGGACCAGGC
* *
26895149 TGATCCTCAGCTTGCA-CATTATGCCTCTCCGGCCAGCCTCTCCGA-CCGGCTGAACG-TCGAAA
257 TGATCCTCA-CTTG-AGCATTATGCCTCTCCGACCAGCCTCT-CGAGCCGGCTGAACGCCCG-AA
26895211 CACTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCCAGTCTAAGCATACAGAGTTCA
318 CACTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCCCA-TCTAAGCATACAGAGTTCA
*
26895275 TTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGTAGGATTGGCAGCAGCAGGGGG
382 TTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCAGCAGGGGG
26895337 GACCGGGCCG
Statistics
Matches: 380, Mismatches: 54, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
452 1 0.00
453 118 0.31
454 114 0.30
455 142 0.37
456 5 0.01
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (453 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGGCAGCAGGATCGATA
GCACATAGGGGTGACCGAGCCGATCCCCAACTTGTGAATTCTGCCTCTCCGACCAGCTGAGCGCC
CGCACGCTCATTTCGCAGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGCCCCAGTCGG
ACCGAGGGTTATGGCAGCAAGACCAGCAGCGGGATCGACAACACACAGAGAGGGACCAGGCTGAT
CCTCACTTGAGCATTATGCCTCTCCGACCAGCCTCTCGAGCCGGCTGAACGCCCGAACACTCGTT
CCATGGGTTGACTTAGGCATACGGAGTTCATCCCCCATCTAAGCATACAGAGTTCATTCCCAGTC
TAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCAGCAGGGGGATCGACTTAT
Found at i:26895626 original size:26 final size:25
Alignment explanation
Indices: 26895577--26895628 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
26895567 GTTGGCTTAG
*
26895577 GCATACGGAGTCATTCCATGTCTAA
1 GCATACGGAGTCATTCCATATCTAA
26895602 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAG-TCATT-CCATATCTAA
26895628 G
1 G
26895629 ATTTTGAGGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 10 0.42
26 11 0.46
27 3 0.12
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTCATTCCATATCTAA
Found at i:26896338 original size:26 final size:26
Alignment explanation
Indices: 26896309--26896361 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26896299 GTTGCCTTAG
*
26896309 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
26896335 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26896361 G
1 G
26896362 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26896928 original size:21 final size:22
Alignment explanation
Indices: 26896904--26896952 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
26896894 TATGGTAGCA
* *
26896904 GGACCGGCAGCACGTAGA-GGG
1 GGACCGGCAGCAAGCAGAGGGG
*
26896925 GGACCGGTAGCAAGCAGAGGGG
1 GGACCGGCAGCAAGCAGAGGGG
26896947 GGACCG
1 GGACCG
26896953 AGCCGATCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.24, C:0.22, G:0.49, T:0.04
Consensus pattern (22 bp):
GGACCGGCAGCAAGCAGAGGGG
Found at i:26897237 original size:26 final size:26
Alignment explanation
Indices: 26897189--26897239 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
26897179 TGGCTTAGGG
* *
26897189 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGCTCATTCCATATCTAAGC
26897215 ATACGGAGCTCATTCCCA-ATCTAAG
1 ATACGGAGCTCATT-CCATATCTAAG
26897240 ATTTTGAGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGCTCATTCCATATCTAAGC
Found at i:26898793 original size:159 final size:159
Alignment explanation
Indices: 26898516--26898988 Score: 472
Period size: 159 Copynumber: 3.0 Consensus size: 159
26898506 TCTAAGATTG
* ** * * * * * * *
26898516 GACCGGATCGAGGGTTACGGCAGCAAGATCGATAGCACGCA-AGGGGGAACGGGCCGATCCCCGG
1 GACCGGACCGAGGGTTGTGGCTGCAGGACCGACAGCACACAGAGGGGGACCGGGTCGATCCCCGG
* * * * *
26898580 CTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCGCACCCCCATTTCGTGGGTTGGCTTAGGC
66 CTTGCGCATTCTGCCTCTCCGGTCGGCTTAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGC
* * *
26898645 ACAGGGAGCTCATTCCATGTCTAAGCCCA
131 ATACGGAGTTCATTCCATGTCTAAGCCCA
* * * *
26898674 -AGCCGGATCGAGGGTTGTGG-TAGTAGGACCGGCAGCACACAGAGGGGGACCGGGTCGATCCCT
1 GA-CCGGACCGAGGGTTGTGGCT-GCAGGACCGACAGCACACAGAGGGGGACCGGGTCGATCCCC
* ** * *
26898737 GGCTTGCGCATTATGCCTCTTTGG-CTGGCTTAGTGCCCACACACTCGTTTCGTGGGTTGACTTA
64 GGCTTGCGCATTCTGCCTCTCCGGTC-GGCTTAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTA
* * * ** *
26898801 TGCATACGAAGTTCATTCCAAGTCTAAGATCG
128 GGCATACGGAGTTCATTCCATGTCTAAGCCCA
* ** * * *
26898833 GATCGGACCGAGGGTTGTGGCTGCAGGATTGATAGCACAGAG-GGGTGGACCGGGTCGATCCCCA
1 GACCGGACCGAGGGTTGTGGCTGCAGGACCGACAGCACACAGAGGG-GGACCGGGTCGATCCCCG
* * * *
26898897 GCTTACGCATTCTGCCTCTCCGGTCGG-TTGAGTGCCCGCACGCTCGTTTTGTGGGTTAGCTTAG
65 GCTTGCGCATTCTGCCTCTCCGGTCGGCTT-AGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAG
26898961 GCATACGGAGTTCATTCCATGTCTAAGC
129 GCATACGGAGTTCATTCCATGTCTAAGC
26898989 ATACAGAGCT
Statistics
Matches: 252, Mismatches: 54, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 35 0.14
159 213 0.85
160 3 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (159 bp):
GACCGGACCGAGGGTTGTGGCTGCAGGACCGACAGCACACAGAGGGGGACCGGGTCGATCCCCGG
CTTGCGCATTCTGCCTCTCCGGTCGGCTTAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCCCA
Found at i:26899712 original size:26 final size:26
Alignment explanation
Indices: 26899683--26899735 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26899673 GTTGACTTAG
*
26899683 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATAAGGAGTTTATCCCCAGTCTAA
*
26899709 GCATAAGGAGTTTATTCCCAGTCTAA
1 GCATAAGGAGTTTATCCCCAGTCTAA
26899735 G
1 G
26899736 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTTATCCCCAGTCTAA
Found at i:26899903 original size:26 final size:26
Alignment explanation
Indices: 26899867--26899919 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26899857 GTTGACTTAG
*
26899867 GCATACGGAGTACATTCCCAATCTAA
1 GCATACGGAGTACATACCCAATCTAA
* *
26899893 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTACATACCCAATCTAA
26899919 G
1 G
26899920 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTACATACCCAATCTAA
Found at i:26899986 original size:184 final size:183
Alignment explanation
Indices: 26899652--26900077 Score: 446
Period size: 184 Copynumber: 2.3 Consensus size: 183
26899642 TCGGCTGCGC
* * ** * *
26899652 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCATAAGG
1 GCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTACATTCCCAATCTAAGCATAAGG
* * * * * * * * * * *
26899717 AGTTTATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCGGCAGTATGCAT
66 AGTTCATACCCAGTCTAAGATCAGACCGAATCGAGGATCACAGCAGCAAGATCAGCAGCACGCAG
* * * * *
26899782 GGGAGACCAGGCCGATCCCCGGCTTG-TGCATTCTGTCTCTTCGATCGACTGAGCA
131 GGGAGACCAGGCCAATCCCCGACTTGCT-AATT-TGCCTCTTCGACCGACTGAG-A
* *
26899837 -CCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTACATTCCCAATCTAAGCATACGG
1 GCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTACATTCCCAATCTAAGCATAAGG
* * * *
26899901 AGTTCATACCCAGTCTAAGATC-GAACCGAATCGAGGATCGCAGCAGTAAGATTAGCAGCACGTA
66 AGTTCATACCCAGTCTAAGATCAG-ACCGAATCGAGGATCACAGCAGCAAGATCAGCAGCACGCA
* * * *
26899965 GGGGGGACCGGGCCAATCCCCGACTTGCTAATTTGCCTCTTCGGCCGCCTGAGA
130 GGGGAGACCAGGCCAATCCCCGACTTGCTAATTTGCCTCTTCGACCGACTGAGA
** * * *
26900019 GCCTGCACGCTCATTTCGTGGGTTGGCTTAGGTATACGTAGTACATT-CCACATCTAAGC
1 GCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTACATTCCCA-ATCTAAGC
26900078 CCTAACCGAA
Statistics
Matches: 199, Mismatches: 38, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
182 4 0.02
183 65 0.33
184 129 0.65
185 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (183 bp):
GCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTACATTCCCAATCTAAGCATAAGG
AGTTCATACCCAGTCTAAGATCAGACCGAATCGAGGATCACAGCAGCAAGATCAGCAGCACGCAG
GGGAGACCAGGCCAATCCCCGACTTGCTAATTTGCCTCTTCGACCGACTGAGA
Found at i:26900271 original size:26 final size:26
Alignment explanation
Indices: 26900221--26900272 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26900211 GTTGACTTAG
*
26900221 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
* *
26900247 GCATACGGAGTTCATTCCTACTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
26900273 AATCAGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTCTAA
Found at i:26900340 original size:354 final size:349
Alignment explanation
Indices: 26899786--26900715 Score: 1006
Period size: 354 Copynumber: 2.6 Consensus size: 349
26899776 ATGCATGGGA
* * ** * * * ** *
26899786 GACCAGGCCGATCCCCGGCTTGTGCATTCTGTCTCTTCGATCGACTGAGCACCCACACGCTCATT
1 GACCAGGCTGATCCTCGGCTTACGCATTATGCCTCTCCGGCCGACTGAGCGCCCACACGCTCATT
* * * *
26899851 TCATGGGTTGACTTAGGCATACGGAGTACATTCCCAATCTAAGCATACGGAGTTCATACCCAGTC
66 TCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATACCCAGTC
* * *
26899916 TAAGATCGAACCGAATCGAGGATCGCAGCAGTA-AGATTAGCAGCACGTAGGGGGGACCGGGCCA
131 TAAGATCG-ACCGAATCGAGGATCGCAGCAGGATCGA-TAGCAG--C--AGGGGGGACCGGGCCG
* *
26899980 ATCCCCGACTTGCTA-A-TTTGCCTCTTCGGCCGCCTGAGAGC-CTGCACGCTCATTTCGTGGGT
190 ATCCCCGACTTGC-ACATTTTGCCTCTCCGGCCGCCTGAGAGCTC-GCACGCTCATTTCATGGGT
* * * * *
26900042 TGGCTTAGGTATACGTAGTACATTCCACATCTAAGCCCTAACC-GAACTGAGGGTTGTGGCAGTA
253 TGGCTTAGGCATACGGAGTACATTCCA-ATCTAAGCCCCAACCTG-ACCGAGGGTTGTGGCAGCA
26900106 GGACCGACAGCAAGATCGACAGCACGCAGAGGGG
316 GGACCGACAGCAAGATCGACAGCACGCAGAGGGG
* * * * * * * *
26900140 GATCGGGCTGATCCTTGGTTTACGTATTATGCCTCTCCGGCCGACTGAGTGCCCGCACACTCATT
1 GACCAGGCTGATCCTCGGCTTACGCATTATGCCTCTCCGGCCGACTGAGCGCCCACACGCTCATT
* * *
26900205 TCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTACTC
66 TCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATACCCAGTC
* * * *
26900270 TAAAATCAGACCGGATCGAAGGTTGCGACAGCAGGATCGATAGCATGCAGGGGGGACCGGGTCGA
131 TAAGATC-GACCGAATCG-AGGAT-CG-CAGCAGGATCGATAGCA-GCAGGGGGGACCGGGCCGA
* * * * *
26900335 TCCCCGACTTACACATTTTGCCTCTCCGGCCGGCTGAGCGCTCGCATGCTCGTTTCATGGGTTGG
191 TCCCCGACTTGCACATTTTGCCTCTCCGGCCGCCTGAGAGCTCGCACGCTCATTTCATGGGTTGG
* * * *
26900400 CTTAGGCATACGGAGTACATTCCAGTCTAAGCCCCAGCCTGACCGAGGGTTGTGGCAGCAGGTCT
256 CTTAGGCATACGGAGTACATTCCAATCTAAGCCCCAACCTGACCGAGGGTTGTGGCAGCAGGACC
* ***
26900465 GGCAGTGCGATCGACAGCACGCAGAGGGG
321 GACAGCAAGATCGACAGCACGCAGAGGGG
* * * * * **
26900494 GACCAGGTTGATCCTCGGCTTACGCATTATGCCTCTCCGGCCGGCTAAGCGCCTATACGCTTGTT
1 GACCAGGCTGATCCTCGGCTTACGCATTATGCCTCTCCGGCCGACTGAGCGCCCACACGCTCATT
* * * *
26900559 TCGTGGGTTGAATTAGGCATACAGAGTTCATCCCCAGCCTAAGCATACAGAGTTCATACCCAGTC
66 TCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATACCCAGTC
* * * * * *
26900624 TAAGATCGGATCGAATCGAGGGTACGGCAGCAAGATCGGTAGCACGTAGGGGGGACCGAGCCGAT
131 TAAGATC-GACCGAATCGAGGAT-C-GCAGCAGGATCGATAGCA-GCAGGGGGGACCGGGCCGAT
* * *
26900689 CCCCGGCTTGCACATTCTACCTCTCCG
192 CCCCGACTTGCACATTTTGCCTCTCCG
26900716 ACCGGTAGAA
Statistics
Matches: 475, Mismatches: 90, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
353 61 0.13
354 326 0.69
355 69 0.15
356 4 0.01
357 12 0.03
358 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (349 bp):
GACCAGGCTGATCCTCGGCTTACGCATTATGCCTCTCCGGCCGACTGAGCGCCCACACGCTCATT
TCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATACCCAGTC
TAAGATCGACCGAATCGAGGATCGCAGCAGGATCGATAGCAGCAGGGGGGACCGGGCCGATCCCC
GACTTGCACATTTTGCCTCTCCGGCCGCCTGAGAGCTCGCACGCTCATTTCATGGGTTGGCTTAG
GCATACGGAGTACATTCCAATCTAAGCCCCAACCTGACCGAGGGTTGTGGCAGCAGGACCGACAG
CAAGATCGACAGCACGCAGAGGGG
Found at i:26900604 original size:26 final size:26
Alignment explanation
Indices: 26900575--26900627 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26900565 GTTGAATTAG
*
26900575 GCATACAGAGTTCATCCCCAGCCTAA
1 GCATACAGAGTTCATACCCAGCCTAA
*
26900601 GCATACAGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGCCTAA
26900627 G
1 G
26900628 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGCCTAA
Found at i:26901257 original size:26 final size:26
Alignment explanation
Indices: 26901221--26901281 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
26901211 GTTGACTTAG
*
26901221 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
26901247 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
26901273 GCATATGGA
1 GCATATGGA
26901282 TTAGACCGGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:26901586 original size:159 final size:158
Alignment explanation
Indices: 26901294--26901756 Score: 386
Period size: 159 Copynumber: 2.9 Consensus size: 158
26901284 AGACCGGATC
* ** * * *
26901294 GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAG-GGCAGACCAGGCCGATCCCC-GACTTGCGCA
1 GAGGGTTGCGGTAGTAGGATCTACAGCACGCAGAGG-GGACCAGGTCGATCCCCAG-CTTACGCA
* * * * * * * * * * * *
26901357 TTCTACCTCTCCGGCC-AGCTGAGCGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGA
64 TTATACCTCTTCGGCCGA-CTCAGCACCCACACGCTCGTTTCGTGGATTGACTTAGGCATATGAA
** *
26901421 GCTCATTCCATGTCTAAGCCCTAG-CTAGA-T
128 ATTCATTCCATGTCTAAGCCC-AGACCAGACT
* * *
26901451 CGAGGGTTGTGGTAGTCA-GAT-TGACAGCACGCAGAGTGGGATCGGGTCGATCCCCAGCTTACG
1 -GAGGGTTGCGGTAGT-AGGATCT-ACAGCACGCAGAG-GGGACCAGGTCGATCCCCAGCTTACG
* * * * *
26901514 CATTATGCCTCTTTGGCC-AGCTCAGCGCCCACACGCTCGTTTCGTGGATTGACTTATGCATATT
62 CATTATACCTCTTCGGCCGA-CTCAGCACCCACACGCTCGTTTCGTGGATTGACTTAGGCATATG
**
26901578 AAATTCATTCCCA-GTCTAAGATCAGACCAGACT
126 AAATTCATT-CCATGTCTAAGCCCAGACCAGACT
* ** *
26901611 GAGGGTTGCGGTAGTAGGATCTACAGCATGCAGAGGGGACCAGGTCGATCCCTGGCTTGCGCATT
1 GAGGGTTGCGGTAGTAGGATCTACAGCACGCAGAGGGGACCAGGTCGATCCCCAGCTTACGCATT
* * * * * * * *
26901676 CTACCTCTTCGGCCGACTGAGCACCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATATGGAGTT
66 ATACCTCTTCGGCCGACTCAGCACCCACACGCTCGTTTCGTGGATTGACTTAGGCATATGAAATT
26901741 CATTCCATGTCTAAGC
131 CATTCCATGTCTAAGC
26901757 ATATGGAGCT
Statistics
Matches: 243, Mismatches: 50, Indels: 24
0.77 0.16 0.08
Matches are distributed among these distances:
157 3 0.01
158 115 0.47
159 118 0.49
160 7 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GAGGGTTGCGGTAGTAGGATCTACAGCACGCAGAGGGGACCAGGTCGATCCCCAGCTTACGCATT
ATACCTCTTCGGCCGACTCAGCACCCACACGCTCGTTTCGTGGATTGACTTAGGCATATGAAATT
CATTCCATGTCTAAGCCCAGACCAGACT
Found at i:26901734 original size:158 final size:158
Alignment explanation
Indices: 26901290--26901755 Score: 469
Period size: 158 Copynumber: 2.9 Consensus size: 158
26901280 GATTAGACCG
* ** * * *
26901290 GATCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAG-GGCAGACCAGGCCGATCCCCGACTTGC
1 GATCGAGGGTTGCGGTAGTAGGATCTACAGCACGCAGAGG-GGACCAGGTCGATCCCCGGCTTGC
* * * * *
26901354 GCATTCTACCTCTCCGGCCAGCTGAGCGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGG
65 GCATTCTACCTCTTCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATG
* * * *
26901419 GAGCTCATTCCATGTCTAAGCCCTAGCTA
130 AAACTCATTCCATGTCTAAGACCTAGCCA
* * * *
26901448 GATCGAGGGTTGTGGTAGTCA-GAT-TGACAGCACGCAGAGTGGGATCGGGTCGATCCCCAGCTT
1 GATCGAGGGTTGCGGTAGT-AGGATCT-ACAGCACGCAGAG-GGGACCAGGTCGATCCCCGGCTT
* * * * * * * * *
26901511 ACGCATTATGCCTCTTTGGCCAGCTCAGCGCCCACACGCTCGTTTCGTGGATTGACTTATGCATA
63 GCGCATTCTACCTCTTCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * *
26901576 TTAAATTCATTCCCA-GTCTAAGATC-AGACCA
128 TGAAACTCATT-CCATGTCTAAGACCTAG-CCA
* *
26901607 GA-CTGAGGGTTGCGGTAGTAGGATCTACAGCATGCAGAGGGGACCAGGTCGATCCCTGGCTTGC
1 GATC-GAGGGTTGCGGTAGTAGGATCTACAGCACGCAGAGGGGACCAGGTCGATCCCCGGCTTGC
* *
26901671 GCATTCTACCTCTTCGGCC-GACTGAGCACCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATAT
65 GCATTCTACCTCTTCGGCCAG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAT
* **
26901735 GGAGTTCATTCCATGTCTAAG
129 GAAACTCATTCCATGTCTAAG
26901756 CATATGGAGC
Statistics
Matches: 246, Mismatches: 51, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
157 4 0.02
158 120 0.49
159 117 0.48
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GATCGAGGGTTGCGGTAGTAGGATCTACAGCACGCAGAGGGGACCAGGTCGATCCCCGGCTTGCG
CATTCTACCTCTTCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGA
AACTCATTCCATGTCTAAGACCTAGCCA
Found at i:26902816 original size:26 final size:26
Alignment explanation
Indices: 26902777--26902832 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
26902767 TGGGTTGACT
*
26902777 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
*
26902803 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
26902829 TAAG
1 TAAG
26902833 ATTGGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:26903175 original size:26 final size:26
Alignment explanation
Indices: 26903146--26903197 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26903136 GTTGACTTAG
*
26903146 GCATATGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
26903172 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26903198 AATTAGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26905140 original size:26 final size:26
Alignment explanation
Indices: 26905104--26905155 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
26905094 TTGACTTAGT
26905104 CATACGAAGTTCATCCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAGTCTAAG
* *
26905130 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAGTCTAAG
26905156 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAGTCTAAG
Found at i:26905316 original size:26 final size:26
Alignment explanation
Indices: 26905287--26905339 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26905277 GTTGACTTAG
26905287 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26905313 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26905339 G
1 G
26905340 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26905402 original size:184 final size:184
Alignment explanation
Indices: 26905067--26905481 Score: 528
Period size: 184 Copynumber: 2.3 Consensus size: 184
26905057 TCCGGCCAGT
** * * *
26905067 TGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGTCATACGAAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * *
26905132 TACGGAGTTCATTCCCAGTCTAAGATTGAACCGGATCGAGGGTTACGGCAGCAGGATCGACAGTA
66 TACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTACGACAGCAGGATCGACAGCA
* * * * * *
26905197 TGCAGGGGGGACCAAGTCAAT-CTCTGGCTTGCGCATTCTGCCTCTCTGGTCGGC
131 TCCAAGGGGGACCAAGTCAATCCTC-AGCTTACGCATTCTGCCTCTCCGATCGGC
* * ** *
26905251 TGAGTGCCCGTACGTTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
* * *
26905316 TACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGACAGTC-GGATCGACAGC
66 TACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTACGACAG-CAGGATCGACAGC
* ** * *
26905380 ATCCAAGGGGGATCGGGTCAATCCTCAGCTTATGCATTCTGCCTCTCCGATGGGC
130 ATCCAAGGGGGACCAAGTCAATCCTCAGCTTACGCATTCTGCCTCTCCGATCGGC
* * *
26905435 TGAGCGCCTGCACACTCGTTTCGTGGGTTGGCTTGGGCATACGGAGT
1 TGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
26905482 ACATTCCACA
Statistics
Matches: 196, Mismatches: 33, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
184 192 0.98
185 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.26
Consensus pattern (184 bp):
TGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTACGACAGCAGGATCGACAGCA
TCCAAGGGGGACCAAGTCAATCCTCAGCTTACGCATTCTGCCTCTCCGATCGGC
Found at i:26905690 original size:26 final size:26
Alignment explanation
Indices: 26905651--26905706 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
26905641 TGGGTTGACT
26905651 TAAGCAGACAGAGTTCAACCCCAGTC
1 TAAGCAGACAGAGTTCAACCCCAGTC
* * **
26905677 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCAGACAGAGTTCAACCCCAGTC
26905703 TAAG
1 TAAG
26905707 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (26 bp):
TAAGCAGACAGAGTTCAACCCCAGTC
Found at i:26905960 original size:366 final size:367
Alignment explanation
Indices: 26905276--26905961 Score: 889
Period size: 366 Copynumber: 1.9 Consensus size: 367
26905266 TCGTTTCGTT
* * * *
26905276 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAAGCAGACAGAGTTCAACCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
26905341 TCGGACTGGATCGAGGGTTGCGACAGTCGGATCGACAGCATCCAAGGGGGATCGGGTCAATCCTC
66 TCAGACTGGATCGAGGGTTGCGACAGTCGGATCGACAGCATCCAAGGGGGACCGGGCCAATCCTC
** ** ** * *
26905406 AGCTTATGCATTCTGCCTCTCCGATGGGCTGAGCGCCTGCACACTCGTTTCGTGGGTTGGCTTGG
131 AGCTTACACATTCTGCCTCTCCGACCGGCTGAGCGCCCACACACTCATTTCGTGGGTTGGCTTAG
** * *
26905471 GCATACGGAGTACATTCCACATCTAAACCCAGTCGGACCAAAGATTGTGGTAGCAGGACCGGCAA
196 GCATACGGAGTACATTCCACATCTAAACCCAACCAGACCAAAGATTGTGGTAGCAAGACCGGCAA
** * * *
26905536 TGGGATCGGCAGCACGCAGAAGGGGACCGGGCTGACCCCCGGCTTGTGCATTATGCCTCTCCGAC
261 CAGGATCAGCAGCACGCAGAAGGGGACCGAGCTGACCCCCGACTTGTGCATTATGCCTCTCCGAC
26905601 TGACCTCTCCAGACGACTGAGCACTCGTACACTCGTTTTATG
326 TGACCTCTCCAGACGACTGAGCACTCGTACACTCGTTTTATG
26905643 GGTTGACTTAAGCAGACAGAGTTCAACCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAAGCAGACAGAGTTCAACCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
26905708 TCAGACTGGATCGAGGGTTGC-AGCAG-CAGGATCGA-AGCA-CGTAGGGGGGACCGGGCCGATC
66 TCAGACTGGATCGAGGGTTGCGA-CAGTC-GGATCGACAGCATC-CAAGGGGGACCGGGCCAATC
* * * * * *
26905769 C-CTGGCTTGCACATTCTGTCTCTCCGGCCGGCTGAGTGCCCACACGCTCATTTCGTGGGTTGGC
128 CTC-AGCTTACACATTCTGCCTCTCCGACCGGCTGAGCGCCCACACACTCATTTCGTGGGTTGGC
* * * * *
26905833 TTAGGCATACGGAGTACATTCCACGTCTAAGCTCCAACCAGACCAAGGGTTGTGG-AGCAAGACT
192 TTAGGCATACGGAGTACATTCCACATCTAAAC-CCAACCAGACCAAAGATTGTGGTAGCAAGACC
* * * ** *
26905897 GGCAGCAGGATCAGCAGCACGTAGAGGGGGATTGAGCTGATCCCCGACTTGTGCATTATGCCTCT
256 GGCAACAGGATCAGCAGCACGCAGAAGGGGACCGAGCTGACCCCCGACTTGTGCATTATGCCTCT
26905962 TCGGCCGACT
Statistics
Matches: 270, Mismatches: 44, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
365 2 0.01
366 160 0.59
367 108 0.40
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (367 bp):
GGTTGACTTAAGCAGACAGAGTTCAACCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACTGGATCGAGGGTTGCGACAGTCGGATCGACAGCATCCAAGGGGGACCGGGCCAATCCTC
AGCTTACACATTCTGCCTCTCCGACCGGCTGAGCGCCCACACACTCATTTCGTGGGTTGGCTTAG
GCATACGGAGTACATTCCACATCTAAACCCAACCAGACCAAAGATTGTGGTAGCAAGACCGGCAA
CAGGATCAGCAGCACGCAGAAGGGGACCGAGCTGACCCCCGACTTGTGCATTATGCCTCTCCGAC
TGACCTCTCCAGACGACTGAGCACTCGTACACTCGTTTTATG
Found at i:26906152 original size:135 final size:135
Alignment explanation
Indices: 26905910--26906163 Score: 341
Period size: 135 Copynumber: 1.9 Consensus size: 135
26905900 AGCAGGATCA
* * * * *
26905910 GCAGCACGTAGAGGGGGATTGAGCTGATCCCCGACTTGTGCATTATGCCTCTTCGGCCGACTGAG
1 GCAGCACGCAGAGGGGGATCGAGCTGATCCCAGACTTGCGCATTATGCCTCTTCGGCCGACTCAG
* * *
26905975 CGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTAGGATCGAGGG
66 CGCCCGCACGCCCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTAGGATCGAGGG
26906040 TTGTG
131 TTGTG
* * * *
26906045 GCAGCACGCAGAGGGGGATCG-GGTCGATCCACAG-CTTGCGCATTATGCCTCTTTGGTCGATTC
1 GCAGCACGCAGAGGGGGATCGAGCT-GATCC-CAGACTTGCGCATTATGCCTCTTCGGCCGACTC
* * *
26906108 AGCGCCCGCACGCCCGTTTCGTAGGTTGACTTATGCATACGGAGTTCATTCCCAGT
64 AGCGCCCGCACGCCCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
26906164 CTACGATCGG
Statistics
Matches: 102, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
134 2 0.02
135 98 0.96
136 2 0.02
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (135 bp):
GCAGCACGCAGAGGGGGATCGAGCTGATCCCAGACTTGCGCATTATGCCTCTTCGGCCGACTCAG
CGCCCGCACGCCCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTAGGATCGAGGG
TTGTG
Found at i:26906350 original size:26 final size:26
Alignment explanation
Indices: 26906300--26906352 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26906290 GTTGGCTTAG
* ***
26906300 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
26906326 GCATACGGAGCTCATTCCCAATCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
26906352 G
1 G
26906353 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAATCTAA
Found at i:26907258 original size:159 final size:158
Alignment explanation
Indices: 26906957--26907459 Score: 471
Period size: 159 Copynumber: 3.2 Consensus size: 158
26906947 CCCAGTCTAA
* * * * *
26906957 GCATACGGAGTTCATTCTC-GGTCTATGATC-GAACCAGACCGAGGGTTGCGGCAACAAGATCGA
1 GCATACGGAGTTCATTC-CATGTCTAAGACCAG-ACCAGACCGAGGGTTGCGGCAGCAAGACCGA
* * * * ** *
26907020 CAGCACG-CAAGGGGGACCAAGCCAATCTGCGGCTTGCGCATTCTGCCTATCCGGCCGGCTAAGC
64 CAGCACGTAAAGGGGGACCGAGTCGATCCCCAGCTTGCGCATTCTGCCTATCCGGCCGGCTAAGC
* * *
26907084 GCTCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CCT-GCACGCTCGTTTCGTGGGTTGACTTAG
* * * **
26907115 GCATAGGGAGCTCATTCCATGTCTAA-ACCCTAG-CCAGACCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGA-CC-AGACCAGACCGAGGGTTGCGGCAGCAAGACCGA
* * * * * * *
26907178 TAGCAC-TCAAAGGGGGACCGGGTCGATCCCTAGCTTGCGCATTATGCCTTTTCGGCCGGCTCAG
64 CAGCACGT-AAAGGGGGACCGAGTCGATCCCCAGCTTGCGCATTCTGCCTATCCGGCCGGCTAAG
* * *
26907242 CACCTGCACACTCGTTTCTTGGGTTGACTTAT
128 C-CCTGCACGCTCGTTTCGTGGGTTGACTTAG
* * **
26907274 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAAGATTGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTGCGGCAGCAAGACCGAC
** * * * * * * *
26907338 AGCACGTAGGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCAGTTGAGCG
65 AGCACGTAAAGGGGGACCGAGTCGATCCCCAGCTTGCGCATTCTGCCTATCCGGCCGGCTAAGC-
*
26907403 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
129 CCTGCACGCTCGTTTCGTGGGTTGACTTAG
*
26907433 GCATACGGAGTTCATTTCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
26907460 CATACGGAGC
Statistics
Matches: 274, Mismatches: 59, Indels: 23
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.01
158 55 0.20
159 209 0.76
160 8 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTGCGGCAGCAAGACCGACA
GCACGTAAAGGGGGACCGAGTCGATCCCCAGCTTGCGCATTCTGCCTATCCGGCCGGCTAAGCCC
TGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:26908193 original size:26 final size:26
Alignment explanation
Indices: 26908157--26908209 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26908147 GTTGAATTAG
26908157 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26908183 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26908209 G
1 G
26908210 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26908744 original size:26 final size:26
Alignment explanation
Indices: 26908708--26908760 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26908698 GTTCACTTAG
26908708 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26908734 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26908760 G
1 G
26908761 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26908847 original size:184 final size:184
Alignment explanation
Indices: 26908084--26908902 Score: 575
Period size: 184 Copynumber: 4.5 Consensus size: 184
26908074 ACCACTCGTT
* * * *
26908084 CGATCCTCGGCTTGCGCATCCTGCCTCTCTGGTCGACTGAACGCCCGCACGCTCATTTCGTGGGT
1 CGATCCTCGGCTTGCGCATTCTGCCTCTTTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGT
* *
26908149 TGAATTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCA
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * ** * *
26908214 GACCGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGATTGGGT
131 GACCAGATCGAGGGTTGCGACAGCACGATCGACAGCACGTAGAGGGAACCGAGC
** * ** * * * *
26908268 CGATCCTTAGCTTGCGTATTCTGCCTCTCCGACCGACTGAGCACCCTCACGCTCATTTCATGGGT
1 CGATCCTCGGCTTGCGCATTCTGCCTCTTTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGT
* * * **
26908333 TGACTTAGGCATACGAAGTTCATCCCTAGTCTAACCATACGGAGTTTTTTCCCAGTCTAAGATCA
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* ** * * * *
26908398 AACTGGATCGAGGGTTACGACGGTAGGATCGACAGCACGTA-AGGGAACCGAGC
131 GACCAGATCGAGGGTTGCGACAGCACGATCGACAGCACGTAGAGGGAACCGAGC
* * * * * ** *
26908451 CGATCCCCGGCTTGCGCATTCTGCCT-TTCCGGCTGGCTGAGCACCCGTGCGCTCGTTTCGTGGG
1 CGATCCTCGGCTTGCGCATTCTGCCTCTT-TGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGG
* * * * ** * * * **
26908515 TTGGCTAAGGCATACGGAGTACAT-TCCACGTCTAAGC---CCCAG-CCGA-ACCGAGGGT-TGT
65 TTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTC-ATTCCCA--GTCTAA
* * * * * * *** * *
26908573 G-GCAG-CAAGACTGGTAACTGGAT-CGACAGCACG--C-AGAGGGGGATCG-GGCTAATCCCCG
126 GATCAGACCAGA-TCG--A-GGGTTGCGACAGCACGATCGACAGCACG-TAGAGG-GAA---CCG
26908631 A-C
182 AGC
** * * * *
26908633 TTGCGCATTAT-GCCTTTTCG-A-TCGGCCTCTTTGGCCTG-CTGAGCGCCCGCACGCTCGTTTC
1 ---CG-ATCCTCGGC-TTGCGCATTCTGCCTCTTTGGCC-GACTGAGCGCCCGCACGCTCATTTC
* *
26908694 GTGGGTTCACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTA
60 GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * *
26908759 AGATCAGACCAGATCGAGGGTTGCGACAGTACGATCGACAGCACGTAGGGGGGACCGAGC
125 AGATCAGACCAGATCGAGGGTTGCGACAGCACGATCGACAGCACGTAGAGGGAACCGAGC
* ** *
26908819 CGATCCTCGGCTTACGCATTCTGCCTCTTTGATCGACTAAGCGCCCGCACGCTCATTTCGTGGGT
1 CGATCCTCGGCTTGCGCATTCTGCCTCTTTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGT
26908884 TGGA-TTAGGCATACGGAGT
66 T-GACTTAGGCATACGGAGT
26908903 ATATTCCACG
Statistics
Matches: 472, Mismatches: 121, Indels: 84
0.70 0.18 0.12
Matches are distributed among these distances:
178 7 0.01
179 11 0.02
180 7 0.01
181 10 0.02
182 14 0.03
183 93 0.20
184 264 0.56
185 19 0.04
186 19 0.04
187 5 0.01
188 13 0.03
189 10 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (184 bp):
CGATCCTCGGCTTGCGCATTCTGCCTCTTTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGT
TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCAGATCGAGGGTTGCGACAGCACGATCGACAGCACGTAGAGGGAACCGAGC
Found at i:26909092 original size:26 final size:26
Alignment explanation
Indices: 26909063--26909115 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26909053 GTTGACTTAG
26909063 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26909089 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26909115 G
1 G
26909116 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26909300 original size:355 final size:354
Alignment explanation
Indices: 26908239--26909301 Score: 1170
Period size: 355 Copynumber: 3.0 Consensus size: 354
26908229 TGCGACAGCA
* * *** * *
26908239 GGATCGACAGCACGCAGAG-GGGATTGGG-TCGATCCTTAGCTTGCGTATTCTGCCTCTCCGACC
1 GGATCGACAGCACGCAGAGAGGGATCGGGCT-AATCCCCGGCTTGCGCATTATGCCTCTCCGACC
* * * * * *
26908302 GACTGAGCACCCTCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCTAA
65 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* ** * * *
26908367 CCATACGGAGTTTTTTCCCAGTCTAAGATCAAACTGGATCGAGGGTTACGACGGTAGGATCGACA
130 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGATCGAGGGTTACGACAGTAGGATCGACA
* * *
26908432 GCACGTA--AGGGAACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTTTCCGG-CTGGCTGAGCA
194 GCACGTAGGAGGG-ACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGCG
** * *
26908494 CCCGTGCGCTCGTTTCGTGGGTTGGCTAAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCC
257 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTC
* * *
26908559 GAACCGAGGGTTGTGGCAGCAAGACTGGTAACT
322 GGACCGAGGGTTGTGGCAGCAAGACTGATAACG
* *
26908592 GGATCGACAGCACGCAGAGGGGGATCGGGCTAATCCCCGACTTGCGCATTATGCCTTTTCGATCG
1 GGATCGACAGCACGCAGAGAGGGATCGGGCTAATCCCCGGCTTGCGCATTATGCC---TC--T--
* * * *
26908657 GCCTCTTTGGCCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCA
59 --C-C---GACCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
26908722 TCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACA
118 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GATCGAGGGTTACGACA
* * * ** *
26908787 GTACGATCGACAGCACGTAGGGGGGACCGAGCCGAT-CCTCGGCTTACGCATTCTGCCTCTTTGA
182 GTAGGATCGACAGCACGTAGGAGGGACCGAGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGG
* * * * * *
26908851 TCGACTAAGCGCCCGCACGCTCATTTCGTGGGTTGGATTAGGCATACGGAGTATATTCCACGTAT
246 TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCT
* * *
26908916 AAGCCCCAGTCGGACCGAGGGTTGTGGCAGTAGGA-TCGATAGCG
311 AAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAAGACT-GATAACG
* * *
26908960 GGATCGGCAGCATGCAGAGAGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGACCG
1 GGATCGACAGCACGCAGAGAGGGATCGGGCTAATCCCCGGCTTGCGCATTATGCCTCTCCGACCG
* *
26909025 GCTGAGCGCCCGCATGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
66 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * **
26909090 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAGGGTTACGGCAGTAGGATCGGTAG
131 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGATC-GAGGGTTACGACAGTAGGATCGACAG
* * * * *
26909155 CACGCAGGAGGGATCGGGCCTATCCCTGGCTTGCGCATTTTGCCTCTCCGGTCGGCTGAGCGCCC
195 CACGTAGGAGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
* * * ** * * *
26909220 GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCT-CATTCCGTGTCTAATCCCTAGTTGG
260 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCCAGTCGG
* **
26909284 ACCAAGGGCAGTGGCAGC
324 ACCGAGGGTTGTGGCAGC
26909302 GGGACCGGTA
Statistics
Matches: 588, Mismatches: 98, Indels: 46
0.80 0.13 0.06
Matches are distributed among these distances:
353 19 0.03
354 28 0.05
355 232 0.39
356 4 0.01
357 2 0.00
358 1 0.00
359 2 0.00
363 2 0.00
364 1 0.00
365 2 0.00
367 123 0.21
368 168 0.29
369 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (354 bp):
GGATCGACAGCACGCAGAGAGGGATCGGGCTAATCCCCGGCTTGCGCATTATGCCTCTCCGACCG
GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGATCGAGGGTTACGACAGTAGGATCGACAGC
ACGTAGGAGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGAC
CGAGGGTTGTGGCAGCAAGACTGATAACG
Found at i:26909481 original size:158 final size:158
Alignment explanation
Indices: 26909318--26909747 Score: 443
Period size: 158 Copynumber: 2.7 Consensus size: 158
26909308 GGTAGCACGT
* * * * * ***
26909318 AGGGGGGACCGGGCCGATCCTCGACTTACGCATTATGCCTGTTCGGTCGACTCAGTGCCCACACG
1 AGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCAACCGACTCAGTGCCCACACG
* * * *
26909383 CTCATTTCATGGGTTGACTTATGGATACGGAGTTCATTCCCAGTTTAAGATC-AGACCGGACCGA
66 CTCATTTCATCGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGA
*
26909447 GGGTTCCGCCAGCAGGATCAACAGCACAC
130 GGGTTCCGCCAGCAAGATCAACAGCACAC
* * * * * *
26909476 AGGGGGGACCGAGTCGATCTTC-AGCTTGCGCATCCTGCCTCTCCAACCGGCTGAGTGCCCGCAC
1 AGGGGGGACCGGGTCGATCCTCGA-CTTGCGCATTCTGCCTCTCCAACCGACTCAGTGCCCACAC
* *
26909540 GCTCATTTCGTCGGTTGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGA
65 GCTCATTTCATCGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGA
* * ** *
26909605 GGGTTGCGGCAGCAAGATTGACAGCACAT
130 GGGTTCCGCCAGCAAGATCAACAGCACAC
* * * ** * *** *
26909634 AGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCAGCCGGTTGAACACCCGCACG
1 AGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCAACCGACTCAGTGCCCACACG
** * * *
26909699 CTTGTTTCATGGGTTTACTTAGGCATACGGAGTTCATT-CCATGTCTAAG
66 CTCATTTCATCGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG
26909748 CATACGGAGC
Statistics
Matches: 225, Mismatches: 43, Indels: 8
0.82 0.16 0.03
Matches are distributed among these distances:
157 4 0.02
158 219 0.97
159 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.23
Consensus pattern (158 bp):
AGGGGGGACCGGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCAACCGACTCAGTGCCCACACG
CTCATTTCATCGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAG
GGTTCCGCCAGCAAGATCAACAGCACAC
Found at i:26909771 original size:26 final size:26
Alignment explanation
Indices: 26909721--26909773 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26909711 GTTTACTTAG
* *
26909721 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
26909747 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
26909773 G
1 G
26909774 AATTTGAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:26910375 original size:26 final size:26
Alignment explanation
Indices: 26910339--26910391 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26910329 GTTGACTTAG
*
26910339 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
26910365 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
26910391 G
1 G
26910392 ATCAAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:26910978 original size:355 final size:352
Alignment explanation
Indices: 26910312--26911477 Score: 1214
Period size: 355 Copynumber: 3.3 Consensus size: 352
26910302 CTGGTCGGCT
*
26910312 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * * *
26910377 CATTCCAAGTCTAAGATCAAACCGAATCGAGGGTTGCGACAGTAGGATCGACAGCACACAGGAGG
66 CATTCCCAGTCTAAGATCGAACCGGATCGAGGGTT-CGACAGTA-GATCGATAGCACACAGGAGG
* * * * ** *
26910442 GATCAGGTCGATCCCCGACTTACGCATTCTGCCTCTCTGGCTGGTTGAGCGCTTGCACGCTTGTT
129 GACCAGGCCGATCCCCGACTTGCGCATTCTGCCTTTCTGGCT-GTTGAGCGCCAGCACGCTCGTT
* * * * * *
26910507 TCGTCGGTTGGCTTAGGCATATGGGGTACATTTCACGTCTAAGCCCCAGTC-GAATCGAGGGTTG
193 TCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGAATCGAGGGTTG
* * * * * * *
26910571 TGGTAGC-GCGATCGGCAGTGGGATTGGTAGCACGCAGAGGGGGCCCAGGCTGATCGCCAGCTTA
258 TGGCAGCAG-GACCGGCAGCGGGATTGATAGCACGAAGAGGGGGACTAGGCTGATC-CCAGCTTA
*
26910635 CGCATTATGCCTTTTCGGTCGGCTGAACGCCC
321 CGCATTATGCCTTTTCGGTCGGCTGAGCGCCC
* ** *
26910667 GCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAAAATT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
*
26910732 CATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACGACAGTAGAATCGATAGCACACAGGAGG
66 CATTCCCAGTCTAAGATCGAACCGGATCGAGGGTT-CGACAGTAG-ATCGATAGCACACAGGAGG
* * ** * * **
26910797 GACCAGGCCAATCCCCGGCTTGCGCATTCTGCCTTTCTGGCCTACTGAGCACCCGCGTGCTCGTT
129 GACCAGGCCGATCCCCGACTTGCGCATTCTGCCTTTCTGG-CTGTTGAGCGCCAGCACGCTCGTT
* *
26910862 TCGTGGGTTGGGTTAGGCATACGGAGTACATTCCATGTTTAAGCCCCAGCCGGAAT-GAGGGTTG
193 TCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGAATCGAGGGTTG
* * * * *
26910926 TGGCAGCAGGACCGGTAACGGGATTGATAGCACAAAGAAGGGGACTAGGCTGATCCCTGACTTAC
258 TGGCAGCAGGACCGGCAGCGGGATTGATAGCACGAAGAGGGGGACTAGGCTGATCCCAG-CTTAC
*
26910991 GCATTATGCCTCTTCGATCGACCTTTTCGGTCGGTTGAGCGCCC
322 GC---A------TT--AT-G-CCTTTTCGGTCGGCTGAGCGCCC
* * * * * *
26911035 GCACGATTGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCTCGAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * *
26911100 CATTCCTAATCTAAGATCGGACCGGATCGAGGGTT-G-C----G---G-TAGCACACAGGAGGGA
66 CATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTCGACAGTAGATCGATAGCACACAGGAGGGA
* ** * * * *
26911155 CCGGGGTGATCCCCGACTTGCGCATTCTGCCTCTTC-GGTCGGTTGAGCGCCAGTACACTCATTT
131 CCAGGCCGATCCCCGACTTGCGCATTCTGCCT-TTCTGG-CTGTTGAGCGCCAGCACGCTCGTTT
* * *
26911219 CATGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTAAGCCCCAGCTGG-ATCGAGGGTTGT
194 CGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGAATCGAGGGTTGT
** * * * * * *
26911283 CACAGCAGGACCGGCAGCGGGATCGACAGCACGTAGAGGGGGA-TCGGATTGATCCTCAGTTTAC
259 GGCAGCAGGACCGGCAGCGGGATTGATAGCACGAAGAGGGGGACTAGG-CTGATCC-CAGCTTAC
* * * *
26911347 GCATTGTGCCTATCCGATCGGCTGAGCGCCC
322 GCATTATGCCTTTTCGGTCGGCTGAGCGCCC
* * * * *
26911378 GTATGCTCGTTTCCTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCTTACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
*
26911443 CATTCCCAGTCTAAGATC-AGATCGGATCGAGGGTT
66 CATTCCCAGTCTAAGATCGA-ACCGGATCGAGGGTT
26911478 GCGGCAACAG
Statistics
Matches: 674, Mismatches: 114, Indels: 58
0.80 0.13 0.07
Matches are distributed among these distances:
343 104 0.15
344 1 0.00
345 1 0.00
347 2 0.00
353 1 0.00
354 4 0.01
355 270 0.40
356 169 0.25
357 6 0.01
358 1 0.00
361 1 0.00
364 2 0.00
365 1 0.00
366 3 0.00
367 1 0.00
368 107 0.16
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (352 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTCGACAGTAGATCGATAGCACACAGGAGGGA
CCAGGCCGATCCCCGACTTGCGCATTCTGCCTTTCTGGCTGTTGAGCGCCAGCACGCTCGTTTCG
TGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGAATCGAGGGTTGTGG
CAGCAGGACCGGCAGCGGGATTGATAGCACGAAGAGGGGGACTAGGCTGATCCCAGCTTACGCAT
TATGCCTTTTCGGTCGGCTGAGCGCCC
Found at i:26911444 original size:26 final size:26
Alignment explanation
Indices: 26911408--26911457 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
26911398 GACTTAGGCA
26911408 TACGGAGTTCATCCCCAGTCTAAGCT
1 TACGGAGTTCATCCCCAGTCTAAGCT
*
26911434 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
26911458 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCT
Found at i:26911638 original size:26 final size:26
Alignment explanation
Indices: 26911602--26911654 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26911592 GTTGACATAG
*
26911602 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
26911628 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26911654 G
1 G
26911655 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26911993 original size:26 final size:26
Alignment explanation
Indices: 26911954--26912006 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26911944 GTTGACTTAG
* *
26911954 GCATACGAAATTCATCCCTAGTCTAA
1 GCATACGAAATTCATCCCCAATCTAA
* *
26911980 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAATTCATCCCCAATCTAA
26912006 G
1 G
26912007 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAATCTAA
Found at i:26912203 original size:12 final size:12
Alignment explanation
Indices: 26912186--26912215 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26912176 AAGGGTTGTC
26912186 ACAGCAGGACCG
1 ACAGCAGGACCG
*
26912198 ACAGCAGGATCG
1 ACAGCAGGACCG
26912210 ACAGCA
1 ACAGCA
26912216 CGTAGAGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.30, G:0.30, T:0.03
Consensus pattern (12 bp):
ACAGCAGGACCG
Found at i:26912305 original size:902 final size:898
Alignment explanation
Indices: 26910656--26912448 Score: 2047
Period size: 902 Copynumber: 2.0 Consensus size: 898
26910646 TTTTCGGTCG
*
26910656 GCTGAACGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAACGCCCGCACGCTCGTTTCGTGGGTTAACATAGGCATACGGAGTTCATCCCCAGTCTAAG
26910721 CATACAAAATTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACGACAGTAGAATCGATAG
66 CATACAAAATTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACGACAGTAGAATCGATAG
* * * * *
26910786 CACACAGGAGGGACCAGGCCAATCCCCGGCTTGCGCATTCTGCCTTTCTGGCCTACTGAGCACCC
131 CACACAGGAGGGACCAGACCAATCCCCGGCATGCGCATTCTGCCTTTCTGACCGACTGAGCACCA
*** * * *
26910851 GCGTGCTCGTTTCGTGGGTTGGGTTAGGCATACGGAGTACATTCCATGTTTAAGCCCCAGCCGGA
196 GCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGA
* * ** * *
26910916 ATGAGGGTTGTGGCAGCAGGACCGGTAACGGGATTGATAGCACAAAGAAGGGGACTAGGCTGATC
261 ATGAGGGTTGTCGCAACAGGACCGACAACGGGATCGACAGCACAAAGAAGGGGACTAGGCTGATC
* * * ** * * *
26910981 CCTGACTTACGCATTATGCCTCTTCGATCGACCTTTTCGGTCGGTTGAGCGCCCGCACGATTGTT
326 CCTGACTTA--CATTA-----CTTC-ATCGACCTCTCCGGCCGACTGAACGCCCACACGATCGTT
* * * *
26911046 TCATGGGTTGACTTAGGCATACGAAGTTCATCTCGAGTCTAAGCATACGGAGTTCATTCCTAATC
383 TCATGGGTTGACTTAGGCATACGAAATTCATCCCGAGTCTAAGCATACGGAGTTCATCCCCAATC
* * * *
26911111 TAAGATCGGACCGGATCGAGGGTTGCGGTAGCACACAGGAGGGACCGGGGTGATCCCCGACTTGC
448 TAAGATCGAACCGGATCGAGGGTTGCGGTAGCACACAGGAAGCACCGGGGTGATCCCCGACTTAC
* * * * * *
26911176 GCATTCTGCCTCTTCGGTCGGTTGAGCGCCAGTACACTCATTTCATGGGTTGGCTTAGGCATACA
513 GCATTCTGCCTCTTCCGACGGCTGAGCGCCAGCACACTCATTTCATGGGTTGGCCTAGCCATACA
* * * * * *
26911241 GAGTACATTCCATGTCTAAGCCCCAGCTGGATCGAGGGTTGTCACAGCAGGACCGGCAGCGGGAT
578 GAGTACATTCCACGTCTAAGCCCCAGCTCGACCAAGGGTTGTCACAGCAGGACCGACAGCAGGAT
** * * * * * *
26911306 CGACAGCACGTAGAGGGGGATCGGATTGATCCTCAGTTTACGCATTGTGCCTATCCGATCGGCTG
643 CGACAGCACGTAGAGAAGGATCGGACTGATCCTCACTTTA-GCATTATACCTATCCGACCGACTG
** * *
26911371 AGCGCCCGTATGCTCGTTTCCTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCTTA
707 AGCGCCCACACGCTCGTTTCCTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * * ** **
26911436 CGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAACAGGATTAGTAGCATG
772 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAACAGGATCAACAGCACA
* * * *
26911501 CAGGGGGGATCAGGTCGATCCTCGACTTGCGCATTTTACCTCTCCGGCCAGCCTCTCCTGCCA
837 CA-GGGGGACCAGGCCGATCCTCGACTTACGCATTCTACCTCTCCGGCCAGCCTCTCCTGCCA
* * * *
26911564 GCTGAATGCCTGCACGCTCGTTTTGTGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAACGCCCGCACGCTCGTTTCGTGGGTTAACATAGGCATACGGAGTTCATCCCCAGTCTAAG
* * * * *
26911629 CATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTACGGCAGTAGGATCGATAG
66 CATACAAAATTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACGACAGTAGAATCGATAG
* * ** * * **
26911694 CACATAGGGGGGACC-GACTGAT-CCTGGCAT-CGCATTCTGCCTCTTC-GATCGGTTGAG-AGC
131 CACACAGGAGGGACCAGACCAATCCCCGGCATGCGCATTCTGCCT-TTCTGACCGACTGAGCA-C
* * * * *
26911754 CAGCACACTTATTTCGTGTGTTGGCTTAGGCATACGGCA-TACATTCCATGTCTATGCCCTAGTC
194 CAGCACACTCATTTCGTGGGTTGGCTTAGGCATACGG-AGTACATTCCATGTCTAAGCCCCAGCC
* * * ** ** *
26911818 GGACTGAGGGTTGTCGCAACGGGACTGACAGTGGGATCGACAGCACGCAGAGGGGGA-TCAGGCT
258 GGAATGAGGGTTGTCGCAACAGGACCGACAACGGGATCGACAGCACAAAGAAGGGGACT-AGGCT
* * * * *
26911882 GAT-CCTCGGCTTA-ATTA-TT-AT-G-CCTCTCCGGCCGACTGAATGCCCACATGCTCGTTTCG
322 GATCCCT-GACTTACATTACTTCATCGACCTCTCCGGCCGACTGAACGCCCACACGATCGTTTCA
*
26911941 TGGGTTGACTTAGGCATACGAAATTCATCCCTAGTCTAAGCATACGGAGTTCATCCCCAATCTAA
386 TGGGTTGACTTAGGCATACGAAATTCATCCCGAGTCTAAGCATACGGAGTTCATCCCCAATCTAA
* *
26912006 GATCGAACCGGATCGAGGGTTGTGGTAGCA-AGATGGATAGCACACAGGGGGGACTGATCGATCC
451 GATCGAACCGGATCGAGGGTTGCGGTAGCACACA-GGA-AGCAC-C---GGGG--TGATC---CC
* * * * *
26912070 TGGCTTACGCATTCTGCCTC-TCCGACAGGCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGGCCT
505 CGACTTACGCATTCTGCCTCTTCCGAC-GGCTGAGCGCCAGCACACTCATTTCATGGGTTGGCCT
*
26912134 AGCCATACGGAGTACATTCCACGTCTAAGCCCCAGC-CGACCCAAGGGTTGTCACAGCAGGACCG
569 AGCCATACAGAGTACATTCCACGTCTAAGCCCCAGCTCGA-CCAAGGGTTGTCACAGCAGGACCG
* *
26912198 ACAGCAGGATCGACAGCACGTAGAGAAGGA-CAGGGCTGATCCTCGACTTGT-GCATTATACCTC
633 ACAGCAGGATCGACAGCACGTAGAGAAGGATC-GGACTGATCCTC-ACTT-TAGCATTATACCTA
* * ** * * *
26912261 TCCGGCCGACTGAGTGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACTGAGTTCATCCCT
695 TCCGACCGACTGAGCGCCCACACGCTCGTTTCCTGAGTTGACTTAGGCATACGGAGTTCATCCCC
* *
26912326 AGTCTAAGCATATGGAGTTCATTCCCGGTCTAAGATCAGACCGGATCGAGGGTTGCGACAACAGG
760 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAACAGG
* *
26912391 ATCAACAGCACACAGGGGGACCGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCGG
825 ATCAACAGCACACAGGGGGACCAGGCCGATCCTCGACTTACGCATTCTACCTCTCCGG
26912449 TCGACTGAGC
Statistics
Matches: 738, Mismatches: 126, Indels: 49
0.81 0.14 0.05
Matches are distributed among these distances:
891 2 0.00
892 116 0.16
893 4 0.01
894 3 0.00
896 2 0.00
897 4 0.01
899 5 0.01
901 45 0.06
902 276 0.37
903 3 0.00
904 6 0.01
905 125 0.17
906 10 0.01
907 4 0.01
908 133 0.18
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (898 bp):
GCTGAACGCCCGCACGCTCGTTTCGTGGGTTAACATAGGCATACGGAGTTCATCCCCAGTCTAAG
CATACAAAATTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTACGACAGTAGAATCGATAG
CACACAGGAGGGACCAGACCAATCCCCGGCATGCGCATTCTGCCTTTCTGACCGACTGAGCACCA
GCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGA
ATGAGGGTTGTCGCAACAGGACCGACAACGGGATCGACAGCACAAAGAAGGGGACTAGGCTGATC
CCTGACTTACATTACTTCATCGACCTCTCCGGCCGACTGAACGCCCACACGATCGTTTCATGGGT
TGACTTAGGCATACGAAATTCATCCCGAGTCTAAGCATACGGAGTTCATCCCCAATCTAAGATCG
AACCGGATCGAGGGTTGCGGTAGCACACAGGAAGCACCGGGGTGATCCCCGACTTACGCATTCTG
CCTCTTCCGACGGCTGAGCGCCAGCACACTCATTTCATGGGTTGGCCTAGCCATACAGAGTACAT
TCCACGTCTAAGCCCCAGCTCGACCAAGGGTTGTCACAGCAGGACCGACAGCAGGATCGACAGCA
CGTAGAGAAGGATCGGACTGATCCTCACTTTAGCATTATACCTATCCGACCGACTGAGCGCCCAC
ACGCTCGTTTCCTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAACAGGATCAACAGCACACAGGGGGAC
CAGGCCGATCCTCGACTTACGCATTCTACCTCTCCGGCCAGCCTCTCCTGCCA
Found at i:26913021 original size:710 final size:711
Alignment explanation
Indices: 26911903--26913585 Score: 1874
Period size: 710 Copynumber: 2.4 Consensus size: 711
26911893 TAATTATTAT
* * * * * *
26911903 GCCTCTCCGGCCGACTGAATGCCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCA
1 GCCTCTCCGACTGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA
* * * * * * *
26911968 TCCCTAGTCTAAGCATACGGAGTTCATCCCCAATCTAAGATCGAACCGGATCGAGGGTTGTGGTA
66 TCCCCAGTCTAAGCATAC-GAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTA
* * * * * * *
26912033 GCAAGATGGATAGCACACAGGGGGGACTGA-TCGAT-CCTGGCTTACGCATTCTGCCTCTCCGA-
130 GTAGGAT-CATAACACACAGGGGGGACTGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAAT
* * * *
26912095 CAGGCTGAGC-GCCAGCACGCTCGTTTCGTGGGTTGGCCTAGCCATACGGAGTACATTCCACGTC
194 C-GGCTGAGCACCCA-CAC-TTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTC
* * * *
26912159 TAAGCCCCAGCCGACCCAAGGGTTGTCACAGCAGGACCGACAGCAGGATCGACAGCACGTAGAGA
256 TAAGACCCAGCCGAACCAAGGGTTATCACAGCAGGACCGACAGCAGGATCGACAGCACGTAAAGA
* ** *
26912224 AGGACAGGGCTGATCCTCGACTTGTGCATTATACCTCTCCGGCCGACTGAGTGCCCACACGCTCG
321 AGGACAGGGATGATCCTCGACTTACGCATTATACCTCTCCGGCCGACTGAGCGCCCACACGCTCG
** * *
26912289 TTTTGTGGGTTGACTTAGGCATACTGAGTTCATCCCTAGTCTAAGCATA-TGGAGTTCATTCCCG
386 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACT-GAGTTCATTCCCA
*
26912353 GTCTAAGATCAGACCGGATCGAGGGTTGC-GACAACAGGATCAACAGCACACAGGGGGACCGGGC
450 GTCTAAGATCAGACCGGATCAAGGGTTGCAG-CAACAGGATCAACAGCACACAGGGGGACCGGGC
* * *
26912417 CGATCCTCGGCTTACGCATTCTACCTCTCCGGTC-GACTGAGCACCCGCACGCTCGTTTCATGGG
514 CGATCCCCAGCTTACACATTCTACCTCTCCGG-CAG-CTGAGCACCCGCACGCTCGTTTCATGGG
**
26912481 TTGGCTTAGGCATACGGAGTACATACCACATCTAAGCCCCAGCCGGA-TCGAAGGTTGT-G-GC-
577 TTGGCTTAGGCATACAAAGTACATACCACATCTAAGCCCCAGCCGGACT-GAAGGTTGTGGAGCG
* * * * * ** *
26912542 A-GCA-GGATCGGTAGCACGTAGAGGGGGATCGGGTTGATCCCTAGCTTGCGTATTATGCCTCTC
641 ACGCAGGGATCGGCAGCACGCAGAGGGGGATCGGGCTAATCCCCAGCTTGCACATTATGCCACTC
26912605 TAGCCG
706 TAGCCG
* *
26912611 GCCTCTCCGATTGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGCCATACGAAGTTCA
1 GCCTCTCCGACTGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA
26912676 TCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTA
66 TCCCCAGTCTAAGCATAC-GAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTA
* * *
26912741 GTAGGATCTATAACACACAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCAAT
130 GTAGGATC-ATAACACACAGGGGGGACTGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAAT
* * *
26912806 CGACTGAGCACCCACATCTTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTACATTTCACGTCTA
194 CGGCTGAGCACCCACA-CTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTA
* * *** ** ** * * * *
26912871 AGACCCAGTCGAACCGAGGGTTATGGTAGCAGGACCGGTAGCAGTTTTGGCAGCATGTAAAGGAG
258 AGACCCAGCCGAACCAAGGGTTATCACAGCAGGACCGACAGCAGGATCGACAGCACGTAAAGAAG
* ** * * *
26912936 GATCA-GGATGATCC-CTGGCTTACGCATTATGTCTCTCCGGCTGGCTGAGCGCCCGCACGCTCG
323 GA-CAGGGATGATCCTC-GACTTACGCATTATACCTCTCCGGCCGACTGAGCGCCCACACGCTCG
26912999 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACTGAGTTCATTCCCAG
386 TTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACTGAGTTCATTCCCAG
** *** *
26913064 TCTAAGATCAGACCGGATCAAGGGTTGCAGCTGCAGGATCGGTAGCACGCAGGGGGACCGGGCCG
451 TCTAAGATCAGACCGGATCAAGGGTTGCAGCAACAGGATCAACAGCACACAGGGGGACCGGGCCG
** * ** * * **
26913129 ATCCCCAGCTTGTACATTCTGCCTCTCCGGCATGCTGAGTGCCTGTACGCTCGTTTTGTGGGTTG
516 ATCCCCAGCTTACACATTCTACCTCTCCGGCA-GCTGAGCACCCGCACGCTCGTTTCATGGGTTG
* * * **
26913194 GCTTAGGCATACAAAGTACATTCCACGTCTAAGCCCCAGTCGGACTGGGGGTTGTGGTAGCAGGA
580 GCTTAGGCATACAAAGTACATACCACATCTAAGCCCCAGCCGGACTGAAGGTTGTGG-AGC--GA
*
26913259 CCGGCAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGCTAATCCCCGGCTTGCACATTATGCCA
642 -C-GCA--GGGATCGGCAGCACGCAGAGGGGGATCGGGCTAATCCCCAGCTTGCACATTATGCCA
*
26913324 CTCTGGCCG
703 CTCTAGCCG
* * * ** * *
26913333 GCCTTTCCGGCTGGCTGAGCACCGGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-AGAGTTC
1 GCCTCTCCGACTGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTC
* * *
26913397 ATCCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTACGAC
65 ATCCCCAGTCTAAGCATACG-AGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCG-G
* * * * ** *
26913462 T-GTAGGATCAGCAATACGCAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGTATCTTCA
128 TAGTAGGATCA-TAACACACAGGGGGGACTGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCA
* * * * *
26913526 ATCGGGTCAGCACCCGCACGCTT-GTTTCGTGGGTTGAG-TTATGCATACGGAGTTCATTCC
192 ATCGGCTGAGCA-CC-CACACTTCGTTTCGTGGGTTG-GCTTAGGCATACGGAGTACATTCC
26913586 CAATCTAAGA
Statistics
Matches: 813, Mismatches: 130, Indels: 50
0.82 0.13 0.05
Matches are distributed among these distances:
708 138 0.17
709 6 0.01
710 380 0.47
711 12 0.01
713 2 0.00
716 1 0.00
719 3 0.00
721 3 0.00
722 258 0.32
723 7 0.01
724 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (711 bp):
GCCTCTCCGACTGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA
TCCCCAGTCTAAGCATACGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAG
TAGGATCATAACACACAGGGGGGACTGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAATCG
GCTGAGCACCCACACTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGA
CCCAGCCGAACCAAGGGTTATCACAGCAGGACCGACAGCAGGATCGACAGCACGTAAAGAAGGAC
AGGGATGATCCTCGACTTACGCATTATACCTCTCCGGCCGACTGAGCGCCCACACGCTCGTTTCA
TGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACTGAGTTCATTCCCAGTCTAA
GATCAGACCGGATCAAGGGTTGCAGCAACAGGATCAACAGCACACAGGGGGACCGGGCCGATCCC
CAGCTTACACATTCTACCTCTCCGGCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAG
GCATACAAAGTACATACCACATCTAAGCCCCAGCCGGACTGAAGGTTGTGGAGCGACGCAGGGAT
CGGCAGCACGCAGAGGGGGATCGGGCTAATCCCCAGCTTGCACATTATGCCACTCTAGCCG
Found at i:26913047 original size:26 final size:26
Alignment explanation
Indices: 26913017--26913069 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26913007 GTTGACTTAG
26913017 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
26913043 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26913069 G
1 G
26913070 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26913279 original size:354 final size:354
Alignment explanation
Indices: 26911564--26913585 Score: 1696
Period size: 353 Copynumber: 5.7 Consensus size: 354
26911554 TCTCCTGCCA
* * * *
26911564 GCTGAATGCCTGCACGCTCGTTTTGTGGGTTGACATAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * *
26911629 CATACAGAGTTCATTCCCAGTCTAAGATC-GAACCGGATCGAGGGTTACGGCAGTAGGATCGATA
66 CATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAGGGTTGC-GCTGCAGGATCGATA
* * * * * * * *
26911693 GCACATAGGGGGGACC-GACTGAT-CCTGGCAT-CGCATTCTGCCTCTTC-GATCGGTTGAGAGC
129 GCACACAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGATC-GCTGAGCGC
* ** * * * *
26911754 CAGCACACTTATTTCGTGTGTTGGCTTAGGCATACGGCA-TACATTCCATGTCTATGCCCTAGTC
193 CAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG-AGTACATTCCACGTCTAAGCCCCAGTC
* * * * ** * *
26911818 GGACTGAGGGTTGTCGCAACGGGACTGACAGTGGGATCGACAGCACGCAGAGGGGGATCAGGCTG
257 GGACTGAGGGTTGTCGCAGCAGGACCGGCAGCAGGATCGGCAGCACGTAGAGGGGGATCAGGCTG
**** * *
26911883 AT-CCTCGGCTTAATTATTATGCCTCTCCGGCCG
322 ATCCCT-GGCTTGCGCATTATGTCTCTCCGGCTG
* * * * * * *
26911916 ACTGAATGCCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCTAGTCTAAG
1 GCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * * * * * *
26911981 CATACGGAGTTCATCCCCAATCTAAGATC-GAACCGGATCGAGGGTTGTGGTAGCAAGATGGATA
66 CATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAGGGTTGCGCT-GCAGGATCGATA
* ** * *
26912045 GCACACAGGGGGGA-CTGATCGAT-CCTGGCTTACGCATTCTGCCTCTCC-GA-CAGGCTGAGCG
129 GCACACAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGATC--GCTGAGCG
* *
26912106 CCAGCACGCTCGTTTCGTGGGTTGGCCTAGCCATACGGAGTACATTCCACGTCTAAGCCCCAG-C
192 CCAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTC
* ** * * * **
26912170 CGACCCAAGGGTTGTCACAGCAGGACCGACAGCAGGATCGACAGCACGTAGAGAAGGA-CAGGGC
257 GGA-CTGAGGGTTGTCGCAGCAGGACCGGCAGCAGGATCGGCAGCACGTAGAGGGGGATCA-GGC
* * ** *
26912234 TGAT-CCTCGACTTGTGCATTATACCTCTCCGGCCG
320 TGATCCCT-GGCTTGCGCATTATGTCTCTCCGGCTG
* * * * *
26912269 ACTGAGTGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACTGAGTTCATCCCTAGTCTAAG
1 GCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
** * ** * *
26912334 CATATGGAGTTCATTCCCGGTCTAAGATCAGACCGGATCGAGGGTTGCGACAACAGGATCAACAG
66 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCG-CTGCAGGATCGATAG
* * * *
26912399 CACACA-GGGGGACCGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCGG-TCGACTGAGCACC
130 CACACAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGATCG-CTGAGCGCC
* * * * *
26912462 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATACCACATCTAAGCCCCAGCCGG
194 AGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGG
* * * *
26912527 A-TCGAAGGTTGT------------GGCAGCAGGATCGGTAGCACGTAGAGGGGGATCGGGTTGA
259 ACT-GAGGGTTGTCGCAGCAGGACCGGCAGCAGGATCGGCAGCACGTAGAGGGGGATCAGGCTGA
* *
26912579 TCCCTAGCTTGCGTATTATGCCTCTCTAGCCGGCCTCTCCG
323 TCCCTGGCTTGCGCATTATG--TCTCT--CCGG---CT--G
* *
26912620 ATTGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGCCATACGAAGTTCATCCCCAGTC
1 ---G-CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
* * * * * *
26912685 TAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGTAGGATCT
62 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGCT-GCAGGATCG
* * * *
26912750 ATAACACACAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCC-AATCGACTGAG
126 ATAGCACACAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGATCG-CTGAG
* * * * *
26912814 CACCCA-CATC-TTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTACATTTCACGTCTAAGACCC
190 C-GCCAGCA-CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCC
* * * * * * ** * * * *
26912877 AGTCGAACCGAGGGTTATGGTAGCAGGACCGGTAGCAGTTTTGGCAGCATGTAAAGGAGGATCAG
253 AGTCGGACTGAGGGTTGTCGCAGCAGGACCGGCAGCAGGATCGGCAGCACGTAGAGGGGGATCAG
* *
26912942 GATGATCCCTGGCTTACGCATTATGTCTCTCCGGCTG
318 GCTGATCCCTGGCTTGCGCATTATGTCTCTCCGGCTG
* * *
26912979 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAG
1 GCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * *
26913044 CATACTGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCAGCTGCAGGATCGGTAG
66 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGC-GCTGCAGGATCGATAG
* * ** *
26913109 CACGCA-GGGGGACCGGGCCGATCCCCAGCTTGTACATTCTGCCTCTCCGGCAT-GCTGAGTGCC
130 CACACAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-ATCGCTGAGCGCC
* * * **
26913172 TGTACGCTCGTTTTGTGGGTTGGCTTAGGCATACAAAGTACATTCCACGTCTAAGCCCCAGTCGG
194 AGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGG
* * * * * * *
26913237 ACTGGGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGCTAAT
259 ACTGAGGGTTGTCGCAGCAGGACCGGCAGCAGGATCGGCAGCACGTAGAGGGGGATCAGGCTGAT
* * *
26913302 CCCCGGCTTGCACATTATGCCACTCTGGCCGGCCTTTCCG
324 CCCTGGCTTGCGCATTATG--TCTCT--CCGG-C--T--G
* *
26913342 GCTG-GCTGAGCACCGGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGT
1 GCTGAG-T--GC-CC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGT
* * * *
26913406 CTAAGCATAC-GAAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTACGACTGTAGGAT
61 CTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCG-CTGCAGGAT
* * * * ** * * *
26913470 CAGCA-A-TACGCAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGTATCTTC-AATCGGG
124 C-G-ATAGCACACAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGATC-GC
* * * * * *
26913532 TCAGCACCCGCACGCTTGTTTCGTGGGTTGAG-TTATGCATACGGAGTTCATTCC
186 TGAGCGCCAGCACGCTCGTTTCGTGGGTTG-GCTTAGGCATACGGAGTACATTCC
26913586 CAATCTAAGA
Statistics
Matches: 1355, Mismatches: 239, Indels: 136
0.78 0.14 0.08
Matches are distributed among these distances:
342 42 0.03
343 4 0.00
344 4 0.00
346 4 0.00
349 1 0.00
351 3 0.00
352 146 0.11
353 276 0.20
354 255 0.19
355 237 0.17
356 116 0.09
357 3 0.00
358 4 0.00
359 2 0.00
361 3 0.00
362 1 0.00
363 5 0.00
364 4 0.00
365 2 0.00
366 11 0.01
367 106 0.08
368 125 0.09
369 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (354 bp):
GCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGCTGCAGGATCGATAGC
ACACAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGATCGCTGAGCGCCAG
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGAC
TGAGGGTTGTCGCAGCAGGACCGGCAGCAGGATCGGCAGCACGTAGAGGGGGATCAGGCTGATCC
CTGGCTTGCGCATTATGTCTCTCCGGCTG
Found at i:26913421 original size:26 final size:26
Alignment explanation
Indices: 26913384--26913436 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26913374 GTTGACTTAG
26913384 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
26913410 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
26913436 G
1 G
26913437 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26913775 original size:26 final size:26
Alignment explanation
Indices: 26913725--26913777 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26913715 GTTGGCTTAG
* *
26913725 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
26913751 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
26913777 G
1 G
26913778 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:26915434 original size:22 final size:22
Alignment explanation
Indices: 26915406--26915456 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
26915396 ACCAGGCTGA
26915406 TCCCCGAGTTATGCATTATGCC
1 TCCCCGAGTTATGCATTATGCC
26915428 TCCCCGAGTTATGCATTATGCC
1 TCCCCGAGTTATGCATTATGCC
*
26915450 TCTCCGA
1 TCCCCGA
26915457 CCAGCCTCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.18, C:0.33, G:0.18, T:0.31
Consensus pattern (22 bp):
TCCCCGAGTTATGCATTATGCC
Found at i:26915845 original size:159 final size:158
Alignment explanation
Indices: 26915599--26916039 Score: 413
Period size: 159 Copynumber: 2.8 Consensus size: 158
26915589 AGCAAGATCG
* * * * * * *
26915599 ACAGCACGTAGGAGGGACCGTA-CCGATCCCCGGCTTACGCATTTTGCCTCTCCGGTCGACTGAG
1 ACAGCACGCAGGGGGGACCG-AGCCGATCCCCGGCTTGCGCATTATGCCTTTTCAGTCGACTGAG
* ** * *
26915663 CGCCCGCATGC-CAGTTTAATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCA
65 CGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
** * *
26915727 ACTGGACCGAGGGTTGTGGCAGCAGAACCG
129 ACCAGACCGAGGGTTGTGACAGCAGAACCA
* * * *
26915757 GCAGCACGCAGAGGGGGATCGAGCCGATCCCCGGCTTGTGCATTATGCCTTTTCAGTCGACTCAG
1 ACAGCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTTTTCAGTCGACTGAG
* * * *****
26915822 CGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAGATTGG
65 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA
* * *
26915886 ACCAGACCGAGGGTTGTGACAGTAGGATCA
129 ACCAGACCGAGGGTTGTGACAGCAGAACCA
* * * * * * * * * *
26915916 ACAGCATGCAGGGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTACC-TCTCTGACCAGCTGAG
1 ACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTTTTCAGTCGA-CTGAG
* * *
26915980 CGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGCCATACGGAGTTCATTCCATGTCCAAGC
65 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
26916040 ATATGGAGCT
Statistics
Matches: 225, Mismatches: 52, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
157 9 0.04
158 93 0.41
159 119 0.53
160 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
ACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTTTTCAGTCGACTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAC
CAGACCGAGGGTTGTGACAGCAGAACCA
Found at i:26916880 original size:158 final size:158
Alignment explanation
Indices: 26916615--26917105 Score: 459
Period size: 158 Copynumber: 3.1 Consensus size: 158
26916605 CCCAGTCTAA
* * * * * *
26916615 GCATATGGAGGTCATTCCCA-GTCTAAGATCGGATTGGACCGAGGGTTGCGGTAACAGGATCGAC
1 GCATATGGAGTTCATT-CCATGTCTAAGACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
*** * *
26916679 AGCAC------GCCCTCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTTCGGCCGGCTGAGCGC
65 AGCACGAAGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGC
* * * *
26916738 CCGCATGCCCGTTTCATGGGTTGGCTTAG
130 CTGCACGCTCGTTTCATGGGTTGACTTAG
* *** * * * *
26916767 GCATAGGGCCCTCATTCCATGTCTAAGCCCCAGCT-GG-CTGAGGGTTGTGGCAGCAGGATC-AG
1 GCATATGGAGTTCATTCCATGTCTAAG-ACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGA-
* * *
26916829 CAGCACGCAGAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTAGGCCGGCTCAGC
64 CAGCACGAAG-GGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGC
* * * *
26916894 ACCTGCACGCTCTTTTCGTGGGTTGACTTAT
128 GCCTGCACGCTCGTTTCATGGGTTGACTTAG
*
26916925 GCATATGGAGTTCATTCC-TAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
1 GCATATGGAGTTCATTCCAT-GTCTAAGACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * *
26916989 AGCATGAAGGGGGGATCCGGTCGATCCTCGACTTACGCATTCTACCT-TTCCGGTCGGCTGAGCG
65 AGCACGAAGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTT-CGGCCGGCTGAGCG
*
26917053 CTTGCACGCTCGTTTCATGGGTT-ACCTTAG
129 CCTGCACGCTCGTTTCATGGGTTGA-CTTAG
26917083 GCATATGGAGTTCATTCCATGTC
1 GCATATGGAGTTCATTCCATGTC
26917106 AAAAGCATAC
Statistics
Matches: 269, Mismatches: 53, Indels: 28
0.77 0.15 0.08
Matches are distributed among these distances:
150 1 0.00
151 28 0.10
152 21 0.08
153 3 0.01
157 8 0.03
158 177 0.66
159 30 0.11
160 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATATGGAGTTCATTCCATGTCTAAGACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGAAGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCC
TGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:26918372 original size:26 final size:26
Alignment explanation
Indices: 26918342--26918394 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26918332 GTTAACTTAG
*
26918342 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26918368 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26918394 G
1 G
26918395 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26919582 original size:26 final size:26
Alignment explanation
Indices: 26919546--26919598 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26919536 GTTGACTTAG
26919546 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
26919572 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26919598 G
1 G
26919599 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26920289 original size:159 final size:158
Alignment explanation
Indices: 26920122--26920428 Score: 382
Period size: 158 Copynumber: 1.9 Consensus size: 158
26920112 CCCCAGCCGA
** * *
26920122 ACCAAGGGTTGTGGCAGCAGGACCGATAACACGAAGAGGGGGACCGGGTCGATCCCCGGCCTGCG
1 ACCAAGGGTTACGGCAGCAGGACCGACAACACGAAG-GGGGGACCGGGTCGATCCCCGGCCTGCA
* * * * * * *
26920187 TATTATGCCTCTTCGATCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTATGCATATGG
65 CATTATGCCTCTCCGACCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTAAGGAATACGG
26920252 AGTTCATTTCCA-GTCTAAGATCAGATCAG
130 AGTTCA-TTCCATGTCTAAGATCAGATCAG
* * * * * * *
26920281 ACCAAGGGTTACGGCAGTAGGATCGACACCATGCAGGGGGGACTGGGTCGATCCCCGGCTTGCAC
1 ACCAAGGGTTACGGCAGCAGGACCGACAACACGAAGGGGGGACCGGGTCGATCCCCGGCCTGCAC
* * * * *
26920346 ATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTTATTTCGTGGGTTGGCTAAGGAATACGGA
66 ATTATGCCTCTCCGACCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTAAGGAATACGGA
26920411 GTTCATTCCATGTCTAAG
131 GTTCATTCCATGTCTAAG
26920429 CATACGAAGC
Statistics
Matches: 124, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
157 5 0.04
158 91 0.73
159 28 0.23
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
ACCAAGGGTTACGGCAGCAGGACCGACAACACGAAGGGGGGACCGGGTCGATCCCCGGCCTGCAC
ATTATGCCTCTCCGACCGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTAAGGAATACGGA
GTTCATTCCATGTCTAAGATCAGATCAG
Found at i:26920387 original size:158 final size:160
Alignment explanation
Indices: 26920000--26920430 Score: 453
Period size: 159 Copynumber: 2.7 Consensus size: 160
26919990 CAGCATGTAG
* * * * * * *
26920000 GGGGGACCGAG-CTGATCCCCAGCTTACGCATTCTACCTCTCCGGCTGGCTGAGTGCCCGCACGC
1 GGGGGACCGGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGC
* * * * * *
26920064 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTT-CATGTCTAAGCCCCAGCCGAACCAAG
65 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCCATGTCTAAGCACCAGCAGAACCAAG
** *
26920128 GGTTGTGGCAGCAGGACCGATAACACGAAGA
130 GGTTACGGCAGCAGGACCGACAACACGAAGA
* * * * * * *
26920159 GGGGGACCGGGTCGATCCCCGGCCTGCGTATTATGCCTCTTCGATCGGCTCAGCGCCCGCACACT
1 GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCT
* * * *
26920224 CATTTCGTGGGTTGACTTATGCATATGGAGTTCATTTCCA-GTCTAAG-ATCAGATCAG-ACCAA
66 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCCATGTCTAAGCACCAG--CAGAACCAA
* * * * *
26920286 GGGTTACGGCAGTAGGATCGACACCATGCAG-
129 GGGTTACGGCAGCAGGACCGACAACACGAAGA
* *
26920317 GGGGGACTGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCT
1 GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCT
* * *
26920382 TATTTCGTGGGTTGGCTAAGGAATACGGAGTTCA-TTCCATGTCTAAGCA
66 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCCATGTCTAAGCA
26920431 TACGAAGCTC
Statistics
Matches: 220, Mismatches: 46, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
157 5 0.02
158 94 0.43
159 116 0.53
160 5 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (160 bp):
GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCT
CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCCATGTCTAAGCACCAGCAGAACCAAGG
GTTACGGCAGCAGGACCGACAACACGAAGA
Found at i:26920540 original size:11 final size:11
Alignment explanation
Indices: 26920524--26920555 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
26920514 CCCAGGGCAC
26920524 CATCGTCGGAG
1 CATCGTCGGAG
26920535 CATCGTCGGAG
1 CATCGTCGGAG
26920546 CATCGTCGGA
1 CATCGTCGGA
26920556 CCGACGGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:26921164 original size:26 final size:26
Alignment explanation
Indices: 26921128--26921180 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26921118 GTTGACTTAG
26921128 GCATACGGAGTTCACCCCCAGTCTAA
1 GCATACGGAGTTCACCCCCAGTCTAA
**
26921154 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACCCCCAGTCTAA
26921180 G
1 G
26921181 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCACCCCCAGTCTAA
Found at i:26921520 original size:26 final size:26
Alignment explanation
Indices: 26921491--26921540 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
26921481 GTGGGTTGAC
*
26921491 TTAAGGATACAGAGATCATCCCCAAT
1 TTAAGCATACAGAGATCATCCCCAAT
* * *
26921517 TTAAGCATACGGAGTTCATTCCCA
1 TTAAGCATACAGAGATCATCCCCA
26921541 GTCTAAGATC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (26 bp):
TTAAGCATACAGAGATCATCCCCAAT
Found at i:26921729 original size:26 final size:26
Alignment explanation
Indices: 26921679--26921731 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26921669 GTTGGCTTAG
* *
26921679 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
26921705 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
26921731 G
1 G
26921732 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:26922406 original size:26 final size:26
Alignment explanation
Indices: 26922370--26922420 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26922360 TGACTTAGGC
*
26922370 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGAAGTTCATCCCCAGTCTAAGT
*
26922396 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
26922421 ATTGGATCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGT
Found at i:26928674 original size:26 final size:26
Alignment explanation
Indices: 26928645--26928697 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26928635 GTTGACTTAG
*
26928645 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
26928671 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26928697 G
1 G
26928698 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26929595 original size:26 final size:26
Alignment explanation
Indices: 26929565--26929617 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26929555 GTTGACTTAG
26929565 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26929591 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26929617 G
1 G
26929618 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26929969 original size:26 final size:26
Alignment explanation
Indices: 26929933--26929985 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26929923 GTTGACTTAG
26929933 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26929959 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26929985 G
1 G
26929986 ATTAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26930219 original size:368 final size:367
Alignment explanation
Indices: 26929537--26930801 Score: 1367
Period size: 368 Copynumber: 3.4 Consensus size: 367
26929527 GCTAAGCGTG
*
26929537 CGCACGCTAATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
1 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
* * *
26929602 TCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGTGGCAGCAGTATCGACAGCACGTAAGGG
66 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGG
* * * * * * * * **
26929667 GGATCGGGCTGATCCCCGGCTT-CAACATTTTGCCTCTCTGGCTGGCTGAGCGCTCGCACACTCA
131 GGATCGGGCCGATCCCTGGCTTGC-GCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGTTCA
* *** *
26929731 TTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCTAGCCAAACCAAGGGTT
195 TTTCGT-GGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGCTGGACCGAGGGTT
* * *
26929796 GTGGTAGCAGGACCGGCAGCGGGATCGACAACATGCAGAAGGGGA-CTAGGCTGATCCCTGGCTT
259 GTGGTAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAAGGGGACCGA-GCTGATCCCTGGCTT
* ** * * * *
26929860 GCTTATTATGCCTC-TCTGGCCGACCTCTTCGACTGGCTGAGCGCC
323 ACACATTATGCCTCTTC-GGCCGGCCTCTCCGGCCGGCTGAGCGCC
* * *
26929905 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGT
1 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
* * * * *
26929970 TCATTCCCAGTCTAAGATTAGACTGGATCGAGGGTTGCGGTAGCAGGATCAACAGCACGTAGGGG
66 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGG
* * * * **
26930035 GGATCGGGCCGATCCCTGGCTTGTGCATTCTGGCTCTCCGACCGGTTGAGTGCCCGCACGTTTGT
131 GGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGTTCAT
* **
26930100 TTCGTCGGTTTGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGCTGGATTGAGGGTTG
196 TTCGT-GGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGCTGGACCGAGGGTTG
* * * * * * *
26930165 TAGTAGTAGGACTGGTAGCAGGATCGACAGCACACAAAAGGGGACCGAGCTGAT-CCTCGGCTTA
260 TGGTAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAAGGGGACCGAGCTGATCCCT-GGCTTA
* ** * * *
26930229 CACATTATGCCTTTTCGATCGGCCTCTCCGGCCGACCGAGCGCT
324 CACATTATGCCTCTTCGGCCGGCCTCTCCGGCCGGCTGAGCGCC
* * * * * * *
26930273 CACACACTCATTCCATGGGTTGACTTAGGCATACGGAGTTCATCCCCGGCCTAAGCACACGGAGC
1 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
* * * * * * ** *
26930338 TCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGTAGTAGCAGGATTGGTAGCACGTAGGAG
66 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGG
* * * * * * * * * *
26930403 GGACCGAGCCGAT-CCTCGACTTACGTATTTTGCCTCTCCGATCGACTAAGCGCCCGTACGTTCA
131 GGATCGGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGTTCA
** *
26930467 TTTTATGAGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAA-CACCCAG-TCGGACCGAGGG
195 TTTCGTG-GTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGC-CCTAGCT-GGACCGAGGG
* * * * ** * * * * *
26930530 CTATGGCAACAGGACCGGCAGCGGGATCGGTAGCACGCAGAGGGGGACAGGGCTAATCCCTGGCA
257 TTGTGGTAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAAGGGGACCGAGCTGATCCCTGGCT
* * *
26930595 TACGCATTATGCCTCTTCGGCCGGCCTCTCCGGCCGGCTGGGTGCC
322 TACACATTATGCCTCTTCGGCCGGCCTCTCCGGCCGGCTGAGCGCC
* * * *
26930641 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATGCAGAGT
1 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
* * * * *
26930706 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAAGATCGACAGCACGAAGGGG
66 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGG
*
26930771 GGATCGGGCCGATTCCC-AGCTTGCGCATTCT
131 GGATCGGGCCGA-TCCCTGGCTTGCGCATTCT
26930802 ACCTTTTTGA
Statistics
Matches: 725, Mismatches: 161, Indels: 22
0.80 0.18 0.02
Matches are distributed among these distances:
367 9 0.01
368 706 0.97
369 8 0.01
370 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (367 bp):
CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGG
GGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGTTCAT
TTCGTGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGCTGGACCGAGGGTTGT
GGTAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAAGGGGACCGAGCTGATCCCTGGCTTACA
CATTATGCCTCTTCGGCCGGCCTCTCCGGCCGGCTGAGCGCC
Found at i:26931579 original size:26 final size:26
Alignment explanation
Indices: 26931543--26931595 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26931533 GTTGACCTAG
26931543 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
*
26931569 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26931595 G
1 G
26931596 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26932065 original size:159 final size:158
Alignment explanation
Indices: 26931622--26932074 Score: 444
Period size: 159 Copynumber: 2.9 Consensus size: 158
26931612 GGTTGCAGCA
* * * * * * * *
26931622 GCAGCAGGATCGGTAGCACGTA-AGGGGGACCGGACCAATCCCCGACTTGCGCATTATGCCTGTC
1 GCAGCGGGACCGGCAGCACGCAGAGGGGGACCGG-GCGATCCCTGACTTGCGCATTATGCCTCTC
* * * *
26931686 CAGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACG
65 CAACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
* *
26931751 TCTAAACCCCAACCAGACCGAGGGTTGTG
130 TCTAAGCCCCAACCAGACCAAGGGTTGTG
* * * * *
26931780 GCAGCGGGATCGGCAGCACTCAGAGGGGGACCGGGCTGATCCCTGGCTTACGCATTCTGCCTCTC
1 GCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGC-GATCCCTGACTTGCGCATTATGCCTCTC
* * * * ** *
26931845 CAGTCCG-CTGAGCACCCGGACGCCCGTTTTATGGGTTGGCTTAGGCATAGGGAGCTCATTCCAT
65 CA-ACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
* ** *
26931909 GTCTAAGCCTCAGTCGGACCAAGGGTTGTG
129 GTCTAAGCCCCAACCAGACCAAGGGTTGTG
* * * * *
26931939 GTAGTGGGACCGGCAGCACGCAGAGGGGGACCGGGTCGATCCCTGACTTGTGCATTATGCCTTTT
1 GCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGG-CGATCCCTGACTTGCGCATTATGCCTCTC
* * * * ** * * *
26932004 CAACCGACTTAGCGCCCGCACGATCATTTCATGGGTTAACTTATGAATACAGAGTTTATTCC-TA
65 CAACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAT-
26932068 GTCTAAG
129 GTCTAAG
26932075 ATTGGATCAG
Statistics
Matches: 236, Mismatches: 53, Indels: 11
0.79 0.18 0.04
Matches are distributed among these distances:
158 23 0.10
159 209 0.89
160 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GCAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCGATCCCTGACTTGCGCATTATGCCTCTCC
AACCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
CTAAGCCCCAACCAGACCAAGGGTTGTG
Found at i:26933048 original size:26 final size:25
Alignment explanation
Indices: 26933012--26933063 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
26933002 GTTGACTTAG
26933012 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCC-GTCTAA
* *
26933038 GCATACGGAGTTCATTCCCGTCTAA
1 GCATACAGAGTTCATCCCCGTCTAA
26933063 G
1 G
26933064 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCCGTCTAA
Found at i:26933165 original size:183 final size:185
Alignment explanation
Indices: 26932853--26933534 Score: 510
Period size: 184 Copynumber: 3.8 Consensus size: 185
26932843 GTTGACTTAT
* * *
26932853 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGGGGGTTGCGATAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGACA
* ** *
26932918 GCACGCAGGGTGGGACCAGTTTGATCCCCGGCTTGCGCATTCTGCCTCTCCAATGGGCTGAGCGC
66 GCACGCAGGGTGGGACAAGTCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACGGGCTGAGCGC
* *
26932983 CCGCACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCC-CAGTCTAA
131 CCGCACGCTCATTTTGTGGGCTGACTTAGGCATACAGAGTACATCCCAC-GTCTAA
* * * * *
26933038 GCATACGGAGTTCATTCCC-GTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGTAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGACA
* * * * ** *
26933102 GCACGTAGGG-GGGATCAAG-CCGATGCTCGGCTTGCGTATTCTGCCTCTCCGGCGGGTTGAGCG
66 GCACGCAGGGTGGGA-CAAGTCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACGGGCTGAGCG
* * * *
26933165 CCCGCACGTTCGTTTTGTGGGCTGGCTTAGGCATACAGAGTACATTCCACGTCTAA
130 CCCGCACGCTCATTTTGTGGGCTGACTTAGGCATACAGAGTACATCCCACGTCTAA
** ** * * ** * ** ** * *
26933221 GC---CCCAG--C--T-GGA-TCGAGGGATGTG-GCAG--C-A-GG-ACCGGTAGCGGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTA-AGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGAC
** * * * * * *
26933271 AGCACGCAAAAG-GGGATCGAG-CTGATCCCCGGCTTGAGCATTATGCCTCTCCGACCGGCTGAG
65 AGCACGC-AGGGTGGGA-CAAGTCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACGGGCTGAG
* **** * *
26933334 CGCCCGCACGCTCGTTTCCAAGGTTGACTTAGGCATACAGAGTTCATCCCTA-GTCTAA
128 CGCCCGCACGCTCATTTTGTGGGCTGACTTAGGCATACAGAGTACATCCC-ACGTCTAA
* * * * * * * *
26933392 GCATATGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCAATAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGACA
** * ** * *
26933457 GCACGCAGGGT-GGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGTGC
66 GCACGCAGGGTGGGACAAGTCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACGGGCTGAGCGC
*
26933521 CCGCACGCCCATTT
131 CCGCACGCTCATTT
26933535 CATGGGTTGG
Statistics
Matches: 380, Mismatches: 94, Indels: 47
0.73 0.18 0.09
Matches are distributed among these distances:
170 17 0.04
171 94 0.25
172 2 0.01
173 1 0.00
174 2 0.01
175 5 0.01
176 6 0.02
178 2 0.01
179 5 0.01
180 8 0.02
182 1 0.00
183 92 0.24
184 108 0.28
185 37 0.10
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGTGGGACAAGTCCGATCCCCGGCTTGCGCATTCTGCCTCTCCAACGGGCTGAGCGC
CCGCACGCTCATTTTGTGGGCTGACTTAGGCATACAGAGTACATCCCACGTCTAA
Found at i:26933381 original size:354 final size:355
Alignment explanation
Indices: 26932939--26933611 Score: 911
Period size: 355 Copynumber: 1.9 Consensus size: 355
26932929 GGGACCAGTT
* * ** ****
26932939 TGATCCCCGGCTTGCGCATTCTGCCTCTCCAATGGGCTGAGCGCCCGCACGCTCATTTTGTGGGT
1 TGATCCCCGGCTTGAGCATTATGCCTCTCCAACCGGCTGAGCGCCCGCACGCTCATTTCCAAGGT
*
26933004 TGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCC-CGTCTAAGATCA
66 TGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCA
* * ** * * * * *
26933068 GATCGGATCGAGGGTTGCGGCAGTAGGATTGACAGCACGTAGGGGGGATCAAGCCGATGCTCGGC
131 GACCGGACCGAGGGTTGCAACAGTAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCCCCGGC
* * ** * ** *
26933133 TTGCGTATTCTGCCTCTCCGGCGGGTTGAGCGCCCGCACGTTCGTTTTGTGGGCTGGCTTAGGCA
196 TTGCGCATTCTGCCTCTCCGGCGGGCTGAGCGCCCGCACGCCCATTTCATGGGCTGGCTTAGACA
*
26933198 TACAGAG-TACATTCCACGTCTAAGCCCCAG-CTGGATCGAGGGATGTGGCAGCAGGACCGGTAG
261 TACAGAGCT-CATTCCACGTCTAAGCCCCAGTC-GGACCGAGGGATGTGGCAGCAGGACCGGTAG
26933261 CGGGATCGGCAGCACGCAAAAGGGGATCGAGC
324 CGGGATCGGCAGCACGCAAAAGGGGATCGAGC
* *
26933293 TGATCCCCGGCTTGAGCATTATGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCCAAGGT
1 TGATCCCCGGCTTGAGCATTATGCCTCTCCAACCGGCTGAGCGCCCGCACGCTCATTTCCAAGGT
* * *
26933358 TGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCG
66 TGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCA
* * **
26933423 GACCGGACCGAGGGTTGCAATAGTAGGATCGACAGCACGCAGGGTGGACCGGGCCGATCCCCGGC
131 GACCGGACCGAGGGTTGCAACAGTAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCCCCGGC
* * *
26933488 TTGCGCATTCTGCCTCTCCGGCTGGCTGAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGACA
196 TTGCGCATTCTGCCTCTCCGGCGGGCTGAGCGCCCGCACGCCCATTTCATGGGCTGGCTTAGACA
** * * *
26933553 TAGGGAGCTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCG
261 TACAGAGCTCATTCCACGTCTAAGCCCCAGTCGGACCGAGGGATGTGGCAGCAGGACCG
26933612 ACAGCACGTA
Statistics
Matches: 272, Mismatches: 44, Indels: 5
0.85 0.14 0.02
Matches are distributed among these distances:
354 105 0.39
355 165 0.61
356 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (355 bp):
TGATCCCCGGCTTGAGCATTATGCCTCTCCAACCGGCTGAGCGCCCGCACGCTCATTTCCAAGGT
TGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCA
GACCGGACCGAGGGTTGCAACAGTAGGATCGACAGCACGCAGGGGGGACCAAGCCGATCCCCGGC
TTGCGCATTCTGCCTCTCCGGCGGGCTGAGCGCCCGCACGCCCATTTCATGGGCTGGCTTAGACA
TACAGAGCTCATTCCACGTCTAAGCCCCAGTCGGACCGAGGGATGTGGCAGCAGGACCGGTAGCG
GGATCGGCAGCACGCAAAAGGGGATCGAGC
Found at i:26933724 original size:159 final size:158
Alignment explanation
Indices: 26933391--26933896 Score: 509
Period size: 159 Copynumber: 3.2 Consensus size: 158
26933381 CCCTAGTCTA
* * * * * * * * *
26933391 AGCATATGGAGTTCATTCC-TAGTCTAAG-ATCGGACCGGACCGAGGGTTGCAATAGTAGGATCG
1 AGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCGAGGGTTACAACAGCAAGACCG
* * * **
26933454 ACAGCACGCAGGGTGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGT
65 ACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTCAAC
* * *
26933519 GCCCGCACGCCCATTTCATGGGTTGGCTT
130 GCCCGCACGCTCGTTTCGTGGGTTGGCTT
* * * * * **** **
26933548 AGACATAGGGAGCTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCG
1 AG-CATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTACAACAGCAAGACCG
* * * * *
26933612 ACAGCACGTAGAGGGGGACCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAA
65 ACAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTCAA
* * *
26933677 CGCCCGCACGCTCGTTTTGTGGGATGACTT
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* * * **
26933707 ATGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTGAGGGTTACAACAGCAAGATT
1 A-GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTACAACAGCAAGACC
* *
26933770 GACAGCACGCAGGGGAGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTTGCTCA
64 GACAGCACGCAGGGG-GGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTCA
**
26933835 ACGTGCGCACGCTCGTTTCGTGGGTTGGCTT
128 ACGCCCGCACGCTCGTTTCGTGGGTTGGCTT
26933866 AGGCATACGGAGTTCATTCCATGTCTAAGCA
1 A-GCATACGGAGTTCATTCCATGTCTAAGCA
26933897 TACGGAGCTC
Statistics
Matches: 280, Mismatches: 59, Indels: 17
0.79 0.17 0.05
Matches are distributed among these distances:
157 2 0.01
158 62 0.22
159 211 0.75
160 5 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
AGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTACAACAGCAAGACCGA
CAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTCAACG
CCCGCACGCTCGTTTCGTGGGTTGGCTT
Found at i:26933919 original size:26 final size:26
Alignment explanation
Indices: 26933868--26933920 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26933858 GTTGGCTTAG
* **
26933868 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATAACTAA
26933894 GCATACGGAGCTCATTCCCA-AACTAA
1 GCATACGGAGCTCATT-CCATAACTAA
26933920 G
1 G
26933921 ATTTTGAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATAACTAA
Found at i:26935336 original size:26 final size:26
Alignment explanation
Indices: 26935300--26935352 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26935290 GTTGACTTAG
*
26935300 GCATATGGAGTTCA-TCACCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
26935326 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26935352 G
1 G
26935353 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26935429 original size:354 final size:357
Alignment explanation
Indices: 26934541--26935515 Score: 1070
Period size: 354 Copynumber: 2.7 Consensus size: 357
26934531 CTCTGGTCGG
** * * *
26934541 CTGAGCGCCCACACGCTCGTTTCGTGGGTTAACTTTGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCACACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCACCAGTCTAAGC
* * *
26934606 TTACGGAGTTCATTCCCAGT-TGAAGATCTA-ATCGGATCGAGGGTTGCAGCAGCAGGATCGACT
66 ATACGGAGTTCATTCCCAGTCT-AAGATC-AGATCGGATCGAGGGTTGCGGTAGCAGGATCGA-T
* * ** * *
26934669 -GCACGCAGGGGGGACCGGGCTGATCCCCAGCTTACGCATTCTGCCCCTCCGGCCGGCTGAGCGC
128 AGCACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGC
* * * * * *
26934733 CCACACGTTCGTTTCGTGGGCTGGCTTAGGCGTACGGAGTACATTCCATGTCCAAGCCCCAGCTG
193 CCGCACGTT-GTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAACCG
* * * * * * * * * **
26934798 GACTGAAGGTTGTAGCAGCAGAACCGGTAGCGGGATCGGCAGCATGTAGAGGGGTACCGGGTTGA
257 GACCGAAGGTTGTAGCAGCAGAACCGGCAGCAGGATCGACACCACGCAGAGGGGGACCAGACTGA
* *
26934863 TCCCCGACTTGCACATTATGCCTCTCCGGCCGGCCTCTCCGGTCGA
322 TCCCCGACTTACACATTATGCCTCT-C--CCAG-----CC-G-CGA
* * * *
26934909 CTGAGCGCCCACATGCTCATTTTATGGGTTGACTTAGGCATACGGACTTCATCTCCAGTCTAAGC
1 CTGAGCGCCCACACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCACCAGTCTAAGC
* * * * * * *
26934974 ATACAGAGTTCTTTCCCAGTCTAAGATCCGACCGGATCGAGGGTTACGGTAGCATGATCGCTAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGATCGATAGC
* * * *
26935039 ACGCAGGGGGGACC-AGGCCGAT-CTTCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCACC
131 ACGCAGGGGGGACCGA-GCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCC
* * * * *
26935102 TGCA-GCTTGTTTCATGGGTTAGCTTAGGCATATGAAGTACATTCCATGTCTAAGCCCCAACCGG
194 CGCACG-TTGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAACCGG
* * * * *
26935166 ACCGAGGGTTGTGGTAGCAGGACTGGCAGCAGGATCGACACCACGCAGAGGGGGACCAGACTGAT
258 ACCGAAGGTTGTAGCAGCAGAACCGGCAGCAGGATCGACACCACGCAGAGGGGGACCAGACTGAT
* *
26935231 CCCCGGCTTACGCATTATGCCTCT-CCAG-C-CGA
323 CCCCGACTTACACATTATGCCTCTCCCAGCCGCGA
* * *
26935263 CTGAGCACCCGCACGCTCGTTTTATGGGTTGACTTAGGCATATGGAGTTCATCACCAGTCTAAGC
1 CTGAGCGCCCACACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCACCAGTCTAAGC
*
26935328 ATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGATCGAGGGTTGCGGTAGCAGGATCGATAGC
66 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGATCGATAGC
* * * *
26935393 ACGTAGGGGGGACCGAGCCGATCCCTGGCATGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCG
131 ACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCG
* * *
26935458 CACGTCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTTTAAGCCCCA
196 CACGT-TGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCA
26935516 GTTAGATCGA
Statistics
Matches: 507, Mismatches: 89, Indels: 35
0.80 0.14 0.06
Matches are distributed among these distances:
354 172 0.34
355 48 0.09
356 1 0.00
357 1 0.00
363 3 0.01
367 120 0.24
368 161 0.32
369 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (357 bp):
CTGAGCGCCCACACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCACCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGATCGATAGC
ACGCAGGGGGGACCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCG
CACGTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAACCGGACC
GAAGGTTGTAGCAGCAGAACCGGCAGCAGGATCGACACCACGCAGAGGGGGACCAGACTGATCCC
CGACTTACACATTATGCCTCTCCCAGCCGCGA
Found at i:26936576 original size:26 final size:26
Alignment explanation
Indices: 26936540--26936589 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26936530 GACTTAGGAA
26936540 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGAGTTCATCCCCAGTCTAAGCG
* *
26936566 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
26936590 ATCAGATCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCG
Done.