Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 281 of 402
Found at i:26937625 original size:26 final size:26
Alignment explanation
Indices: 26937589--26937640 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26937579 GTTAACTTAG
*
26937589 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26937615 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26937641 AATTGGATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26938995 original size:26 final size:26
Alignment explanation
Indices: 26938965--26939023 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
26938955 GTTGACTTAG
26938965 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
26938991 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
26939017 -CAT-TGGA
1 GCATATGGA
26939024 CCAGATCGAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 24 0.80
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:26940592 original size:26 final size:26
Alignment explanation
Indices: 26940556--26940608 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26940546 GTTGACTTAG
*
26940556 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
26940582 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
26940608 G
1 G
26940609 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:26940954 original size:26 final size:26
Alignment explanation
Indices: 26940924--26940976 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26940914 GCTGACTTAG
*
26940924 GCATATGGAGTTCA-TCGCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
26940950 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26940976 G
1 G
26940977 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26941655 original size:26 final size:26
Alignment explanation
Indices: 26941618--26941670 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26941608 GTTGACTTAG
*
26941618 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
26941644 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26941670 G
1 G
26941671 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26942719 original size:26 final size:26
Alignment explanation
Indices: 26942680--26942732 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26942670 GTTGACTTAG
*
26942680 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
26942706 GCATACAGATTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26942732 G
1 G
26942733 ATCGAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26943087 original size:26 final size:26
Alignment explanation
Indices: 26943048--26943100 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26943038 GTTGAATTAG
*
26943048 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
* * *
26943074 GCATATGAATTTCATTCCTAGTCTAA
1 GCATATGAAGTTCATCCCCAGTCTAA
26943100 G
1 G
26943101 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAGTCTAA
Found at i:26943318 original size:367 final size:367
Alignment explanation
Indices: 26942630--26943556 Score: 981
Period size: 367 Copynumber: 2.5 Consensus size: 367
26942620 GCGCATCCTT
* * *
26942630 CCTCTCTGGTCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAT
* * *
26942695 CCCCAGTCTAAGCATACAGATTTCATTCCTAGTCTAAGATCGAACTGGATCGAGGGTTACGGTAG
66 CCCCAGTCTAAGCATAGA-ATTTCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTTACGGCAG
** * * * * * *
26942760 CTGGATCGGCAGCACATAGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC
130 CAAGATCGGCAGCACACAGAGGGGACCGAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGATC
*
26942825 AGCTTGGCACCCGCACGCTTATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAA
195 AGCTTGGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAA
* ** **
26942890 ACCCCAATCGGACCGAGGGTTGTGGTAGTAGTACCGGTAGTGGGATCGGCAGCACACAGAGGGGG
260 ACCCCAATCGGACCGAGGGTTGTGGTAGAAGTACCGACAGCAGGATCGGCAGCACACAGAGGGGG
* * * *
26942955 A-CTGAGCTGAT-CCCTTGCTTGCGCATTATGCCTTTTC-GGCCAG
325 ATC-GAGCTGATACTC-AGCTTGCACATTATGCC-TTTCAGACCAG
* * * * *
26942998 CCTCTCCGATCGGCTGAGCGCCCGCGCACTTGTTTCGTGGGTTGAATTAGGCATATGGAGTTCAT
1 CCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAT
* *
26943063 CCCCAGTCTAAGCATATGAATTTCATTCCTAGTCTAAGATTGGACCGGATCGAGGGTTGA-GGCA
66 CCCCAGTCTAAGCATA-GAATTTCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTT-ACGGCA
* * *
26943127 GCAAGATCGGTAGCACACA-AGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCTGAT
129 GCAAGATCGGCAGCACACAGAGGGGACCGAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGAT
** * * * * **
26943191 TGGC-TGAGCGCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCT
194 CAGCTTG-GCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCT
* * * * * *
26943255 AAGCCCCAATCGGAGCGAGGGTTGTGGTAGCAAG-ACTGACAGCAGGATTGGTAGCATACAGAGG
258 AAACCCCAATCGGACCGAGGGTTGTGGTAG-AAGTACCGACAGCAGGATCGGCAGCACACAGAGG
* **
26943319 GGGATCGGGCTGATACTCAGCTTGCACATTATGCCTTTCAGACTGG
322 GGGATCGAGCTGATACTCAGCTTGCACATTATGCCTTTCAGACCAG
* * * * * * * *
26943365 GCTTTTCGGTCGGTTGAGTGTCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCAT
1 CCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAT
* * * * * * * * * * *
26943430 CCCCAGTCTTAGGATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AAACTGAGGGTTGCGACA
66 CCCCAGTCTAAGCATA-GAATTTCATTCCTAGTCTAAGATCGAACCGGATC-GAGGGTTACGGCA
* * * ** * * * *
26943494 GTAGGATCGACAGCACGTAGGGGGGACCGAGCTGATCCTC-GACTTACGCATTCTGCCTATCCG
129 GCAAGATCGGCAGCACACAGAGGGGACCGAGCCGATCCCCAG-CTTACGCATTCTGCCTCTCCG
26943557 GTGGGCTGAA
Statistics
Matches: 460, Mismatches: 88, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
366 8 0.02
367 283 0.62
368 167 0.36
369 2 0.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (367 bp):
CCTCTCCGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAT
CCCCAGTCTAAGCATAGAATTTCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTTACGGCAGC
AAGATCGGCAGCACACAGAGGGGACCGAGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGATCA
GCTTGGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAA
CCCCAATCGGACCGAGGGTTGTGGTAGAAGTACCGACAGCAGGATCGGCAGCACACAGAGGGGGA
TCGAGCTGATACTCAGCTTGCACATTATGCCTTTCAGACCAG
Found at i:26943460 original size:26 final size:27
Alignment explanation
Indices: 26943410--26943464 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
26943400 CATGGGTTGA
*
26943410 CTTAGGCATATGGAGTTCATCCCCAGT
1 CTTAGGCATACGGAGTTCATCCCCAGT
*
26943437 CTTAGG-ATACGGAGTTCATTCCCAGT
1 CTTAGGCATACGGAGTTCATCCCCAGT
26943463 CT
1 CT
26943465 AAGATCGGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (27 bp):
CTTAGGCATACGGAGTTCATCCCCAGT
Found at i:26944650 original size:24 final size:26
Alignment explanation
Indices: 26944613--26944663 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
26944603 GTTGACTTAG
26944613 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
26944638 GCATA-GGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26944663 G
1 G
26944664 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26945015 original size:26 final size:26
Alignment explanation
Indices: 26944979--26945031 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26944969 GTTGACTTAG
26944979 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
26945005 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
26945031 G
1 G
26945032 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:26945119 original size:184 final size:183
Alignment explanation
Indices: 26944929--26945356 Score: 495
Period size: 184 Copynumber: 2.3 Consensus size: 183
26944919 CTCCGATCGA
* * *
26944929 CCTCTCCGGCTGGTTGAGTGCCCGTGCACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGGCTGGCTGAGTGCCCGTGCACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCAT
* **
26944994 CCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGCAG
66 CCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTCACGGCAG
* * * * * ***
26945059 TAGGATTGGCAGCACACAAAGGGGATCGGATCCATCCTCGGGTTGTGCATTCTG
131 CAGGATCGACAGCACAC-AAGGGGACCGGATCCATCCCCAACTTGTGCATTCTG
* * * *
26945113 CCTCTCCGGCCGACTGA--GCAC-TCGCAAGCTCGTTTTGTGGGTTGGCTTAGGCATACGGGGTT
1 CCTCTCCGGCTGGCTGAGTGCCCGT-GC-A-CTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTT
* * *
26945175 CATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTCACGG
63 CATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTCACGG
* ** * * **
26945240 TAGCAGGATCGACAGCATGCAGGGGGACCGGGTTGATCCCCAACTTGTGCATTCTG
128 CAGCAGGATCGACAGCACACAAGGGGACCGGATCCATCCCCAACTTGTGCATTCTG
** * *
26945296 CCTCTCCGG-TCGGCTGAGTGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGT
1 CCTCTCCGGCT-GGCTGAGTGCCCGTGCACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGT
26945357 ACATTCCACA
Statistics
Matches: 201, Mismatches: 36, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
181 1 0.00
182 5 0.02
183 73 0.36
184 118 0.59
185 4 0.02
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.25
Consensus pattern (183 bp):
CCTCTCCGGCTGGCTGAGTGCCCGTGCACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCAT
CCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTCACGGCAG
CAGGATCGACAGCACACAAGGGGACCGGATCCATCCCCAACTTGTGCATTCTG
Found at i:26945201 original size:26 final size:26
Alignment explanation
Indices: 26945163--26945215 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26945153 GTTGGCTTAG
*
26945163 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
26945189 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26945215 G
1 G
26945216 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26945698 original size:539 final size:548
Alignment explanation
Indices: 26944593--26945719 Score: 1299
Period size: 539 Copynumber: 2.1 Consensus size: 548
26944583 CGGTTGAGCT
* * * *
26944593 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAAGCATAGGGGTTCATTCCCA
1 CGTTTCTTGGGTTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGCATAGGAGTTCATTCCCA
* * ** *
26944657 GTCTAAGATCGGATCAGATCGAGGGTTGCTACTGTAGGATCGAGGGCACGTAGGGGGGACCGGGC
66 GTCTAAGATCGGACCAGATCGAGGGTTGCTACTGCAGGATCGACAGCACGCAGGGGGGACCGGGC
*** * *
26944722 CGATCCCCGGTTTGTGTATTCTACCTCTCCGGCCGACTGAGCGCCCGCACACTCGTTTCGTGGGT
131 CGATCCCCAACTTGTGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACACTCATTTCGTGGGT
** * *
26944787 TGGCTTAGGCATACAGAGTACATTCCATGCCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGTAG
196 TGGCTTAGGCATACAGAGTACATTCCACACCTAAGCCCCAATCGGACCGAGGGTTGTGG-AGCAG
* * *
26944852 GACAGGCAGTAGGATCGACAGCTCACAGAGGGGGATCGGACTGATCCCCGGCTTGCCCATTATGC
260 GACAGGCAGTAGGATAGACA-CTCACAGAGGGGGACCGGACTGATCCCCAGCTTGCCCATTATGC
*
26944917 CTCTCCGATCGACCTCTCCGGCTGGTTGAGTGCCCGTGCACTCGTTTCGTGGGTTGACTTAGGCA
324 CTCTCCGATCGACCTCTCCGGCTGGCTGAGTGCCCG-GCACTCGTTTCGTGGGTTGACTTAGGCA
* * * *
26944982 TACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGA
388 TACGGAGTTCATCCCCAATCTAAGCACACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * * * * * ** *
26945047 GGGTTGCGGCAGTAGGATTGGCAGCACACAAAGGGGATCGGATCCATCCTCGGGTTGTGCATTCT
453 GGGTAGCGACAGTAGGATCGACAGCACACAAAGGGGATCGGAGCCATCATCGACTTGCGCATTCT
* *
26945112 GCCTCTCCGGCCGACTGAGCACTCGCAAGCT
518 ACCTCTCCGGCCGACTGAGCACTCGCAAGCC
26945143 CGTTT-TGTGGGTTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCC
1 CGTTTCT-TGGGTTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGCATA-GGAGTTCATTCC
* *
26945207 CAGTCTAAGATCGGACCGGATCGAGGG-T-C-ACGGTAGCAGGATCGACAGCATGCA-GGGGGAC
64 CAGTCTAAGATCGGACCAGATCGAGGGTTGCTAC--T-GCAGGATCGACAGCACGCAGGGGGGAC
** * * * * * *
26945268 CGGGTTGATCCCCAACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTTG
126 CGGGCCGATCCCCAACTTGTGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACACTCATTTCG
* * * *
26945333 TGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTATGCCCCAATTGGACCGAGGGTTGT-G-
191 TGGGTTGGCTTAGGCATACAGAGTACATTCCACACCTAAGCCCCAATCGGACCGAGGGTTGTGGA
* * *
26945396 GCA-G-CAGG-A-TCGG-TAG-CA-T-GCAGAGGGGGACCGGGCTGATCCCCAGCTTGCCCATTA
256 GCAGGACAGGCAGTAGGATAGACACTCACAGAGGGGGACCGGACTGATCCCCAGCTTGCCCATTA
* * *
26945453 TGCCTCTCCGATCGGCCTTTCC-GATCGGCTGAGTGCCC-GCACGTTCGTTTCGTGGGTTGACTT
321 TGCCTCTCCGATCGACCTCTCCGGCT-GGCTGAGTGCCCGGCAC--TCGTTTCGTGGGTTGACTT
* * * *
26945516 CGGCATACGGAGTTCATCCCCAATCTTAGCACGCAGAGTTCATTCCCAGTCTAAGATCGGATCGG
383 AGGCATACGGAGTTCATCCCCAATCTAAGCACACAGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * *
26945581 ACCGAGGGTAGTGACAGTAGGATCGATAGCACAC-AGGAGGGATCGG-GCCGATCATCGACTTGC
448 ACCGAGGGTAGCGACAGTAGGATCGACAGCACACAAAG-GGGATCGGAGCC-ATCATCGACTTGC
* * ** * * *
26945644 GCATTCTATCTCTTCGGGGGGCTGAGCGC-CTGCATGCC
511 GCATTCTACCTCTCCGGCCGACTGAGCACTC-GCAAGCC
* * *
26945682 CGTTTCTTGTGTTGGCTTAGGTATA-GGGAGCTCATTCC
1 CGTTTCTTGGGTTGGCTTAGGCATACGGG-GTTCATTCC
26945720 ATCTCTAAGC
Statistics
Matches: 489, Mismatches: 74, Indels: 39
0.81 0.12 0.06
Matches are distributed among these distances:
537 4 0.01
538 10 0.02
539 242 0.49
540 2 0.00
542 2 0.00
543 2 0.00
544 3 0.01
545 1 0.00
546 4 0.01
547 1 0.00
548 2 0.00
549 2 0.00
550 32 0.07
551 132 0.27
552 50 0.10
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (548 bp):
CGTTTCTTGGGTTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGCATAGGAGTTCATTCCCA
GTCTAAGATCGGACCAGATCGAGGGTTGCTACTGCAGGATCGACAGCACGCAGGGGGGACCGGGC
CGATCCCCAACTTGTGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACACTCATTTCGTGGGT
TGGCTTAGGCATACAGAGTACATTCCACACCTAAGCCCCAATCGGACCGAGGGTTGTGGAGCAGG
ACAGGCAGTAGGATAGACACTCACAGAGGGGGACCGGACTGATCCCCAGCTTGCCCATTATGCCT
CTCCGATCGACCTCTCCGGCTGGCTGAGTGCCCGGCACTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATCCCCAATCTAAGCACACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
TAGCGACAGTAGGATCGACAGCACACAAAGGGGATCGGAGCCATCATCGACTTGCGCATTCTACC
TCTCCGGCCGACTGAGCACTCGCAAGCC
Found at i:26945810 original size:356 final size:355
Alignment explanation
Indices: 26945142--26945812 Score: 744
Period size: 356 Copynumber: 1.9 Consensus size: 355
26945132 ACTCGCAAGC
* * * * * * **
26945142 TCGTTTTGTGGGTTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCACACAGAGTTCATTCC
* * **
26945207 CAGTCTAAGATCGGACCGGATCGAGGGTCACGGTAGCAGGATCGACAGCATGCAGGGGGACCGGG
66 CAGTCTAAGATCGGACCGGACCGAGGGTCACGGCAGCAGGATCGACAGCACACAGGGGGACCGGG
** * * * * * *
26945272 TTGATCCCCAACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTTGTGGG
131 CCGATCACCAACTTGCGCATTCTACCTCTCCGGGCGGCTGAGCGCCCGCACGCCCATTTTGTGGG
* ** *
26945337 TTGGCTTAGGCATACGGAGTACATTCCACATCTATGCCCCAATTGGACCGAGGGTTGTGGCAGCA
196 TTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCA
* ** * *
26945402 GGATCGGTAGCATGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCCCATTATGCCTCTCCGATCG
261 GGACCGCAAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCACATTATGCCTCTCCGATCG
26945467 GCCTTTCCGATCGGCTGAGTGCCCGCACGT
326 GCCTTTCCGATCGGCTGAGTGCCCGCACGT
* * *
26945497 TCGTTTCGTGGGTTGACTTCGGCATACGGAGTTCATCCCCAATCTTAGCACGCAGAGTTCATTCC
1 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCACACAGAGTTCATTCC
* * * *
26945562 CAGTCTAAGATCGGATCGGACCGAGGGT-A-GTGACAGTAGGATCGATAGCACACAGGAGGGATC
66 CAGTCTAAGATCGGACCGGACCGAGGGTCACG-G-CAGCAGGATCGACAGCACACAGG-GGGACC
* * * * * * * *
26945625 GGGCCGATCATCGACTTGCGCATTCTATCTCTTCGGGGGGCTGAGCGCCTGCATGCCCGTTTCT-
128 GGGCCGATCACCAACTTGCGCATTCTACCTCTCCGGGCGGCTGAGCGCCCGCACGCCCATTT-TG
* * * *
26945689 TGTGTTGGCTTAGGTATAGGGAGCT-CATTCCATC-TCTAAGCCCCAACCGAACCGAGGGTTTTG
192 TGGGTTGGCTTAGGCATACGGAG-TACATTCCA-CATCTAAGCCCCAACCGAACCGAGGGTTGTG
* ** **
26945752 GCAGCGGGACCGACAAG-ACGCAGAGGGGGATTGGG-TCGATCCCTGGCTTGCACATTATGCC
255 GCAGCAGGACCG-CAAGCACGCAGAGGGGGACCGGGCT-GATCCCCAGCTTGCACATTATGCC
26945813 CCTTCGACCG
Statistics
Matches: 255, Mismatches: 53, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
353 1 0.00
354 2 0.01
355 99 0.39
356 148 0.58
357 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (355 bp):
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCACACAGAGTTCATTCC
CAGTCTAAGATCGGACCGGACCGAGGGTCACGGCAGCAGGATCGACAGCACACAGGGGGACCGGG
CCGATCACCAACTTGCGCATTCTACCTCTCCGGGCGGCTGAGCGCCCGCACGCCCATTTTGTGGG
TTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAACCGAACCGAGGGTTGTGGCAGCA
GGACCGCAAGCACGCAGAGGGGGACCGGGCTGATCCCCAGCTTGCACATTATGCCTCTCCGATCG
GCCTTTCCGATCGGCTGAGTGCCCGCACGT
Found at i:26946455 original size:184 final size:184
Alignment explanation
Indices: 26946264--26946856 Score: 897
Period size: 184 Copynumber: 3.2 Consensus size: 184
26946254 TTCGGTCGGT
* * *
26946264 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTACCCCAGTCTAAGCG
1 TGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCTACCCCAGTCTAAGCG
* * *
26946329 TACGAAGTTCATTCCTAGTCTAAGATTGGATCAGATTGAGGGTTGCGGCAGTAGGATCAGCAGCA
66 TACGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTGCGGCAGTAGGATCAGCAGCA
* *
26946394 CACAGGGAGGATCAGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATTGAC
131 CACAGGGAGGATCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGAC
26946448 TGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTT-TATCCCCAGTCTAAGC
1 TGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCTA-CCCCAGTCTAAGC
* *
26946512 GTACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGGCAGTAGGATCGGCAGC
65 GTACGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTGCGGCAGTAGGATCAGCAGC
* *
26946577 ACACAGAGAGGATCAGGTCGATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGAC
130 ACACAGGGAGGATCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGAC
* * *
26946632 TGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTC-ATCCCAGTCTAAGCA
1 TGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCTACCCCAGTCTAAGCG
* * * * *
26946696 TACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTACGACAGTAGTATCAACAGCA
66 TACGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTGCGGCAGTAGGATCAGCAGCA
* ** * * *
26946761 CACAGGGGGGA-CAGGGTCGATCCCCGGCTTGCACATTCTGCCTCT-CTAGCCGGC
131 CACAGGGAGGATCA-GGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGA-TCGAC
26946815 TGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAC
1 TGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAC
26946857 GAAGTACATT
Statistics
Matches: 374, Mismatches: 31, Indels: 9
0.90 0.07 0.02
Matches are distributed among these distances:
182 4 0.01
183 153 0.41
184 217 0.58
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (184 bp):
TGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCTACCCCAGTCTAAGCG
TACGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTGCGGCAGTAGGATCAGCAGCA
CACAGGGAGGATCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGAC
Found at i:26946698 original size:25 final size:26
Alignment explanation
Indices: 26946668--26946719 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
26946658 GTTGGCTTAG
26946668 GCATACAGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
26946693 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
26946719 G
1 G
26946720 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:26947470 original size:281 final size:281
Alignment explanation
Indices: 26946958--26947505 Score: 704
Period size: 281 Copynumber: 2.0 Consensus size: 281
26946948 TTGATCCTCG
* * *
26946958 GCTTACGCATTATGCCTCTTCGACTGACCTCTCCGACTAGTTGAGCGCCCGTACGCTTGTTTCGT
1 GCTTACGCATTATGCCTCTTCGACTGACCTCTCCGACTAGTTGAGCGCCCGCACGCTCGTTCCGT
* * *
26947023 GGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCACATGAAGTTCATTCCTAGTCTAAG
66 GGGTTGACTTAGACATACAGAGTTCATCCCCAGTCTAAGCACATGAAGTTCATTCCCAGTCTAAG
* * *
26947088 ATTAGATCGAAACGAGGGTTACGACAGCAGGATCAACAGCACGCAAGGGGGACCGGGCCGATCCT
131 ATCAGACCGAAACGAGGGTTACGACAGCAGGATCAACAGCACGCAAGGGGGACCGGGCCGATCCC
* * * * **
26947153 TGGCTTGCACATTCTACCTCTTTGGTCGATTGAGCACCCGCATGCCCATTTTGTGGGTTGGCTTA
196 CGACTTGCACATTCTACCTCTTTGGTCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTA
26947218 GGCATACATACTATATCTTCA
261 GGCATACATACTATATCTTCA
* * * * * * *
26947239 GCTTGCGCATTATGCCTCTCTGGCCT-ACCTCTTCGA-TCGGTTGAGTGCCCGCATGCTCGTTCC
1 GCTTACGCATTATGCCTCT-TCGACTGACCTCTCCGACT-AGTTGAGCGCCCGCACGCTCGTTCC
* ** * *
26947302 GTGGGTTGACTTCGATGTACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTA
64 GTGGGTTGACTTAGACATACAGAGTTCATCCCCAGTCTAAGCACATGAAGTTCATTCCCAGTCTA
* ** * ** * * *
26947367 AGATCAGACCGGATTGAGGGTTATGGTAGTAGGATCGACAGCACGCAAGGGGGACCGGGCTGATC
129 AGATCAGACCGAAACGAGGGTTACGACAGCAGGATCAACAGCACGCAAGGGGGACCGGGCCGATC
* * * *
26947432 CCCGACTTGCGCATTCTGCCTCTTTGGTCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCT
194 CCCGACTTGCACATTCTACCTCTTTGGTCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCT
26947497 TAGGCATAC
259 TAGGCATAC
26947506 GGAGTAGATT
Statistics
Matches: 225, Mismatches: 40, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
280 1 0.00
281 220 0.98
282 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.26, T:0.27
Consensus pattern (281 bp):
GCTTACGCATTATGCCTCTTCGACTGACCTCTCCGACTAGTTGAGCGCCCGCACGCTCGTTCCGT
GGGTTGACTTAGACATACAGAGTTCATCCCCAGTCTAAGCACATGAAGTTCATTCCCAGTCTAAG
ATCAGACCGAAACGAGGGTTACGACAGCAGGATCAACAGCACGCAAGGGGGACCGGGCCGATCCC
CGACTTGCACATTCTACCTCTTTGGTCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTA
GGCATACATACTATATCTTCA
Found at i:26947724 original size:26 final size:26
Alignment explanation
Indices: 26947686--26947736 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26947676 TGACTTAGGA
26947686 ATACGGAGATCA-TCCCTAGTCTAAGC
1 ATACGGAGATCATTCCC-AGTCTAAGC
*
26947712 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGATCATTCCCAGTCTAAG
26947737 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGATCATTCCCAGTCTAAGC
Found at i:26949290 original size:26 final size:26
Alignment explanation
Indices: 26949254--26949306 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26949244 GTTGACTTAG
* *
26949254 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
26949280 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26949306 G
1 G
26949307 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26949642 original size:367 final size:366
Alignment explanation
Indices: 26948835--26949859 Score: 1175
Period size: 367 Copynumber: 2.8 Consensus size: 366
26948825 TGCGCATCCT
* * *
26948835 GCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTCTCGTGGGTTGACTTAGGCATAC-AAGGTTC
1 GCCTCTCAGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA-GTTC
* * *
26948899 ATCCCCAGTCTAAGCATAC-GCAGTTCATTTCTAGTCTAAGATCAGATCGGATCAAGGGTTGCGG
65 ATCCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGG
* * * * *
26948963 CAGCAGGATCGACAGCACGCATGGGGGATTGGGTCGAT-CCTCGGCTTACGCATTCTGCCTCTCT
129 TAGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCT-GGCTTACGCATTCTGCCTCTCC
* * *
26949027 GGTTGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTACATTCCACGT
193 GGTCGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-GAGTACATTCCACGT
** * * * * *
26949092 CTAAGAACCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGATAGTGGGATCAGTAGCGCGTAGAG
257 CTAAGCCCCAACTGGACCGAGGGTTGTGGCAGCAGGACCGATAGCGGGATCAGTAACACG-AGAG
* * *
26949157 GGGGATCGGGCTGAACCCCGGCTTGCGCATTATGCCTCTTCCGCCA
321 GGAGACCGGGCTGAACCCCGGCTTGCGCATTATACCTCTTCCGCCA
** * * * *
26949203 GCCTCTCAGACCAGCTGAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCAGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* ** * *
26949268 TCCCCAGTGTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGATA
66 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGTA
* * * * * *
26949333 GCAGGAGCGACAGCAAGCAGGGGGGACCAGGCCGATCCCTGGCTTACGAATTCTGCCTCTCCGGC
131 GCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGT
* * *
26949398 CGATTGAGCACCCGCACGATCATTTCGTGGGTTGGCTTAGGCATACGAGTACATTCCACATCTAA
196 CGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTACATTCCACGTCTAA
* * * *
26949463 GCCCCAACTGGACCGAGGGATGTGGCAGTAGGACCGATAGCGGGATCTGTAAAATACG-GAGGGA
261 GCCCCAACTGGACCGAGGGTTGTGGCAGCAGGACCGATAGCGGGATCAGT--AACACGAGAGGGA
* * * * *
26949527 GACCGGGCTGATCCCTGGCTTGTGCATTATACCTCTT-CGATCG
324 GACCGGGCTGAACCCCGGCTTGCGCATTATACCTCTTCCG-CCA
* * * *
26949570 GCCTCTCCGGTCGGCTGAGTGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCAGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
**
26949635 TCCCCAGTCTAAGCATA-AGGAGTTCATTCCCAGTCTAAGATCAGACTAGATCAAGGGTTGCGGT
66 TCCCCAGTCTAAGCATACA-GAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGT
* ** * ** * * * * *
26949699 AGTAGGATCGGTAGCACGTAGGGGGGATCGGGCTAATCCCCGGCTTGCGCATTCTGCCTTTGCAG
130 AGCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGG
* * ** * * *
26949764 TCGACTGAGCTCCTACACGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGCT-CATTCCATGTC
195 TCGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT-ACGAG-TACATTCCACGTC
* *
26949828 TAAACCCC-AGTCGGACCGAGGGTTGTGGCAGC
258 TAAGCCCCAACT-GGACCGAGGGTTGTGGCAGC
26949860 GGGATCGAGA
Statistics
Matches: 546, Mismatches: 101, Indels: 20
0.82 0.15 0.03
Matches are distributed among these distances:
366 3 0.01
367 296 0.54
368 238 0.44
369 9 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (366 bp):
GCCTCTCAGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGTA
GCAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGT
CGATTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTACATTCCACGTCTAA
GCCCCAACTGGACCGAGGGTTGTGGCAGCAGGACCGATAGCGGGATCAGTAACACGAGAGGGAGA
CCGGGCTGAACCCCGGCTTGCGCATTATACCTCTTCCGCCA
Found at i:26949651 original size:26 final size:26
Alignment explanation
Indices: 26949621--26949673 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26949611 GTTGACTTAG
*
26949621 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
26949647 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
26949673 G
1 G
26949674 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:26950893 original size:25 final size:26
Alignment explanation
Indices: 26950856--26950907 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
26950846 GTTGACTTAG
26950856 GCATACGGAGTTCA-TCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
26950881 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
26950907 G
1 G
26950908 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:26951252 original size:26 final size:26
Alignment explanation
Indices: 26951222--26951274 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26951212 CTTGACTTAG
26951222 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26951248 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26951274 G
1 G
26951275 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26951444 original size:26 final size:26
Alignment explanation
Indices: 26951406--26951458 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26951396 GTTGGCTTAG
*
26951406 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
26951432 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26951458 G
1 G
26951459 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26951902 original size:539 final size:546
Alignment explanation
Indices: 26950793--26951913 Score: 1300
Period size: 539 Copynumber: 2.1 Consensus size: 546
26950783 CGATCCCTGG
* * * * * * * * *
26950793 CTTGCGCATCCTGCCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
1 CTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACTCGCAAGCTCATTTCGTGGGTTGACTTAGGC
* **
26950858 ATACGGAGTTCATCCCAATCTAAGCATACGGGGTTCATTCCCAGTCTAAGATCGGATTGGATCGA
66 ATACGGAGTTCATCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGA
* ** * * *
26950923 GGGTTGCTACTGTAGGATCGAGGGCACGCAGAGGGGATCGGGCCGATCCCCGGCTTGCGTATTCT
131 GGGTTGCTACTGCAGGATCGACAGCACGCAGAGGGGACCGGGCCGATCCCCAGCTTGCGCATTCT
* *
26950988 GCCTCTCCGACCGACTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTATA
196 GCCTCTCCGACCGACTGAGTGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACA
** * * *
26951053 TTCCATGCCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAATAGGACAGGCAACAAGATCGACAGC
261 TTCCACACCTAAGCCCCAACCGGACCGAGGGTTGTGGC-A-AGGACAGGCAAC-AGATAGACAGC
* * * *
26951118 TCACAGAGGGGACCGAGCTGATCCCCGGCTTGCCCATTATGCCTCTTCGATCGGCCTCTCCGGTT
323 -CACAGAGGGGACCGAGCTGATCCCCAGCTTGCCCATTATGCCTCTCCGATCGGCCTCTCCGATC
* *
26951183 GGTTGAGTGCCCGTGCACTCGTTTCATGGCTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
387 GGCTGAGTGCCCGTGCACTCGTTTCATGGCTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
* * * * * * * *
26951248 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGGCAGTAGGATTGGCA
452 GCACACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTAGCGACAGTAGGATCGACA
* * *
26951313 GCACGCAGAGGGGATCGGGTCCATCCTCGG
517 GCACACAGAGGGGATCGGGTCCATCATCGA
* * * * * *
26951343 GTTGTGGATTCTGCCTCTCCGGCCGGCTGAGCACTCGCAAGCTCATTTTGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACTCGCAAGCTCATTTCGTGGGTTGACTTAGGC
* * *
26951408 ATACGGGGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCG
66 ATACGGAGTTCA-TCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCG
* ** *
26951473 AGGG-T-C-ACGGTAGCAGGATCGACAGCATGCAG-GGGGACCGGGTTGATCCCCAGCTTGTGCA
130 AGGGTTGCTAC--T-GCAGGATCGACAGCACGCAGAGGGGACCGGGCCGATCCCCAGCTTGCGCA
** * * * *
26951534 TTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAG
192 TTCTGCCTCTCCGACCGACTGAGTGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAG
* * ** * *
26951599 TACATTCCACATCTATGCCCCAATTGGACCGAGGGTTGTGGC-A-G-CAGG-ATC-GGTAG-CAT
257 TACATTCCACACCTAAGCCCCAACCGGACCGAGGGTTGTGGCAAGGACAGGCAACAGATAGACA-
* * *
26951658 G-CAGAG-GGGGACCGGGCTGATCCCCAGCTTGCCCATTATGCCTCTCCGATCGGCCTTTCCGAT
321 GCCACAGAGGGGACCGAGCTGATCCCCAGCTTGCCCATTATGCCTCTCCGATCGGCCTCTCCGAT
* * *
26951721 CGGCTGAGTG-CC-TGCACGCTCGTTTCGTGGGTTGACTTCGGCATACGGAGTTCATCCCCAATC
386 CGGCTGAGTGCCCGTGCA--CTCGTTTCATGGCTTGACTTAGGCATACGGAGTTCATCCCCAATC
* * *
26951784 TTAGCACGCAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTAGTGACAGTAGGATCG
449 TAAGCACACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTAGCGACAGTAGGATCG
* *
26951849 ATAGCACACAGGGGGGATCGGG-CCGATCATCGA
514 ACAGCACACAGAGGGGATCGGGTCC-ATCATCGA
* **
26951882 CTTGCGCATTCTATCTCTCCGGGGGGCTGAGC
1 CTTGCGCATTCTACCTCTCCGGCCGGCTGAGC
26951914 GCCTGCATGC
Statistics
Matches: 480, Mismatches: 83, Indels: 27
0.81 0.14 0.05
Matches are distributed among these distances:
537 4 0.01
538 4 0.01
539 205 0.43
540 4 0.01
541 2 0.00
542 4 0.01
544 2 0.00
545 4 0.01
546 1 0.00
547 1 0.00
548 2 0.00
549 1 0.00
550 179 0.37
551 67 0.14
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (546 bp):
CTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACTCGCAAGCTCATTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGA
GGGTTGCTACTGCAGGATCGACAGCACGCAGAGGGGACCGGGCCGATCCCCAGCTTGCGCATTCT
GCCTCTCCGACCGACTGAGTGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACAGAGTACA
TTCCACACCTAAGCCCCAACCGGACCGAGGGTTGTGGCAAGGACAGGCAACAGATAGACAGCCAC
AGAGGGGACCGAGCTGATCCCCAGCTTGCCCATTATGCCTCTCCGATCGGCCTCTCCGATCGGCT
GAGTGCCCGTGCACTCGTTTCATGGCTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCAC
ACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTAGCGACAGTAGGATCGACAGCAC
ACAGAGGGGATCGGGTCCATCATCGA
Found at i:26952022 original size:356 final size:355
Alignment explanation
Indices: 26951383--26952067 Score: 754
Period size: 356 Copynumber: 1.9 Consensus size: 355
26951373 GCACTCGCAA
* * * * * * **
26951383 GCTCATTTTGTGGGTTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCACACAGAGTTCATT
* * **
26951448 CCCAGTCTAAGATCGGACCGGATCGAGGGTCACGGTAGCAGGATCGACAGCATGCAGGGGGACCG
66 CCCAGTCTAAGATCGGACCGGACCGAGGGTCACGGCAGCAGGATCGACAGCACACAGGGGGACCG
** * * * * *
26951513 GGTTGATCCCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTTGTG
131 GGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGGCGGCTGAGCGCCCGCACGCCCATTTTGTG
* ** *
26951578 GGTTGGCTTAGGCATACGGAGTACATTCCACATCTATGCCCCAATTGGACCGAGGGTTGTGGCAG
196 GGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAACCGAACCGAGGGTTGTGGCAG
* ** * * *
26951643 CAGGATCGGTAGCATGCAGAGGGGGACCGGG-CTGATCCCCAGCTTGCCCATTATGCCTCTCCGA
261 CAGGACCGCAAGCACGCAGAGGGGGACCGGGTC-GATCCCCAGCTTGCACATTATGCCCCTCCGA
26951707 TCGGCCTTTCCGATCGGCTGAGTGCCTGCAC
325 TCGGCCTTTCCGATCGGCTGAGTGCCTGCAC
* * * *
26951738 GCTCGTTTCGTGGGTTGACTTCGGCATACGGAGTTCATCCCCAATCTTAGCACGCAGAGTTCATT
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCACACAGAGTTCATT
* * *
26951803 CCCAGTCTAAGATCGGATCGGACCGAGGGT-A-GTGACAGTAGGATCGATAGCACACAGGGGGGA
66 CCCAGTCTAAGATCGGACCGGACCGAGGGTCACG-G-CAGCAGGATCGACAGCACACA-GGGGGA
* ** * * * * *
26951866 TCGGGCCGATCATC-GACTTGCGCATTCTATCTCTCCGGGGGGCTGAGCGCCTGCATGCCCGTTT
128 CCGGGCCGATCCCCAG-CTTGCGCATTCTACCTCTCCGGGCGGCTGAGCGCCCGCACGCCCATTT
* * * * *
26951930 TTTGTGTTGGCTTAGGTATAGGGAGCT-CATTCCATC-TCTAAGCCCCAACCGAACCGAGGGTTT
192 TGTGGGTTGGCTTAGGCATACGGAG-TACATTCCA-CATCTAAGCCCCAACCGAACCGAGGGTTG
* ** **
26951993 TGGCAGCGGGACCGACAAG-ACGCAGAGGGGGATTGGGTCGATCCCTGGCTTGCACATTATGCCC
255 TGGCAGCAGGACCG-CAAGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTGCACATTATGCCC
*
26952057 CTTCGATCGGC
319 CTCCGATCGGC
26952068 TCAGCACCCG
Statistics
Matches: 267, Mismatches: 55, Indels: 15
0.79 0.16 0.04
Matches are distributed among these distances:
353 1 0.00
354 2 0.01
355 98 0.37
356 161 0.60
357 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (355 bp):
GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCACACAGAGTTCATT
CCCAGTCTAAGATCGGACCGGACCGAGGGTCACGGCAGCAGGATCGACAGCACACAGGGGGACCG
GGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGGCGGCTGAGCGCCCGCACGCCCATTTTGTG
GGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAACCGAACCGAGGGTTGTGGCAG
CAGGACCGCAAGCACGCAGAGGGGGACCGGGTCGATCCCCAGCTTGCACATTATGCCCCTCCGAT
CGGCCTTTCCGATCGGCTGAGTGCCTGCAC
Found at i:26952736 original size:184 final size:184
Alignment explanation
Indices: 26952493--26953106 Score: 815
Period size: 184 Copynumber: 3.3 Consensus size: 184
26952483 TCTCCGATCA
* ** ** * * *
26952493 GCCTCTTCGATCGGTTGAGCGCCCGCGCGTTCGTTTCGTGGGTTGACCTAGGCATACAGAGTTT-
1 GCCTCTCCGATCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTTA
* *
26952557 TACCCCAGTCTAAGCGTACGGAGTTCATTCCCAATCTAAGATTCGATCGGATTGAGGGTTGCGGC
66 T-CCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATTCGATCGGATCGAGGGTTGCGGC
* * * *
26952622 AGTAGGATCGATAGCACATAGGGAGGATCAGGTCGATCCCCGACTTGTGCATTCT
130 AGTAGGATCGACAGCACACAGGGAGGATCAGGTCGATCCCTGGCTTGTGCATTCT
26952677 GCCTCTCCGATCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTTA
1 GCCTCTCCGATCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTTA
*
26952742 TCCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGGCA
66 TCCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATTCGATCGGATCGAGGGTTGCGGCA
* * *
26952807 GTAGGATCGACAGCACGCAGGGAGGATCAGGTCGATCCCTGGCTTGTACATTTT
131 GTAGGATCGACAGCACACAGGGAGGATCAGGTCGATCCCTGGCTTGTGCATTCT
* * * * *
26952861 ACCTCTCCGATC-AGCTGCGCACCTGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTC
1 GCCTCTCCGATCGA-CTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTT
* * * * *
26952925 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACCGGATCAAGGGTTACGA
65 ATCCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATTC-GATCGGATCGAGGGTTGCGG
** * * *
26952989 CAGTAATATCAACAGCACACAGGGGGGA-CAGGGTCGATCCCTGGCTTGCGCATTCT
129 CAGTAGGATCGACAGCACACAGGGAGGATCA-GGTCGATCCCTGGCTTGTGCATTCT
* * * *
26953045 GCCTCT-CTAGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
1 GCCTCTCCGA-TCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGT
26953107 ACATTCCACC
Statistics
Matches: 379, Mismatches: 45, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
183 6 0.02
184 372 0.98
185 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (184 bp):
GCCTCTCCGATCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTTA
TCCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATTCGATCGGATCGAGGGTTGCGGCA
GTAGGATCGACAGCACACAGGGAGGATCAGGTCGATCCCTGGCTTGTGCATTCT
Found at i:26952941 original size:26 final size:26
Alignment explanation
Indices: 26952912--26952964 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26952902 GTTGGCTTAG
26952912 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
26952938 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26952964 G
1 G
26952965 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26953956 original size:26 final size:26
Alignment explanation
Indices: 26953916--26953967 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
26953906 GTTGACTTAG
26953916 GCATACGGAGATCATCCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
* *
26953942 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
26953968 CATCGAACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGATCATCCCCAGTCTAA
Found at i:26955791 original size:13 final size:13
Alignment explanation
Indices: 26955773--26955798 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26955763 GTGCATTATA
26955773 CCTCTCCGATCGG
1 CCTCTCCGATCGG
26955786 CCTCTCCGATCGG
1 CCTCTCCGATCGG
26955799 TTGAGTGCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.46, G:0.23, T:0.23
Consensus pattern (13 bp):
CCTCTCCGATCGG
Found at i:26956247 original size:159 final size:158
Alignment explanation
Indices: 26955862--26956257 Score: 386
Period size: 159 Copynumber: 2.5 Consensus size: 158
26955852 CACAGTCTAA
* * * * * * *
26955862 GCATAAAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGGTAGTAGGATCGGTA
1 GCATAAGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGATA
* * * * *
26955927 GCACGTAGGGGGGATCGGGCTAATCCTCGGCTTACGCATTCTGCCTCTGCAGTCGACTGAGCTCC
66 GCACGTAGGGGGGATCGGGCTAATCCTCGGCTTACACATTATGCCTCTGCAGTCGACTCAACACC
* *
26955992 TGCACGCCCGTTTCGTGGGTTGGCTTAG
131 CGCACGCCCGTTTCGTGGGTTGACTTAG
* * * * ** *
26956020 GCATAAGGAGCTCA-TTCCATGTCTAA-ACCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCG
1 GCATAAGGAGTTCATTTCCA-GTCTAAGA--TCAGACCAGACCGAGGGTTGTGGCAGTAGGATCG
* * * * *** *
26956082 ATAGCACGTAGAGGGGGATCGAG-TCGATCCTCGGCTTGCACATTATGCCTTTTTGGTCGGCTCA
63 ATAGCACGTAG-GGGGGATCGGGCT-AATCCTCGGCTTACACATTATGCCTCTGCAGTCGACTCA
* *
26956146 ACACCCGCACGCTCGTTTCGTGGGTTGACTTAT
126 ACACCCGCACGCCCGTTTCGTGGGTTGACTTAG
** * * *
26956179 TTATACGGAGTTCATTTCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGTAGGATCGACA
1 GCATAAGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGATA
*
26956244 GCACGCAGGGGGGA
66 GCACGTAGGGGGGA
26956258 CTGGGTCAAT
Statistics
Matches: 186, Mismatches: 44, Indels: 16
0.76 0.18 0.07
Matches are distributed among these distances:
157 5 0.03
158 57 0.31
159 118 0.63
160 6 0.03
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATAAGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGATA
GCACGTAGGGGGGATCGGGCTAATCCTCGGCTTACACATTATGCCTCTGCAGTCGACTCAACACC
CGCACGCCCGTTTCGTGGGTTGACTTAG
Found at i:26956343 original size:158 final size:158
Alignment explanation
Indices: 26955869--26956352 Score: 451
Period size: 158 Copynumber: 3.1 Consensus size: 158
26955859 TAAGCATAAA
* * * * * *
26955869 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCGGTAGTAGGATCGGTAGCACGTA
1 GAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGATAGCACGTA
* * * * *
26955934 GGGGGGATCGGG-CTAATCCTCGGCTTACGCATTCTGCCTCTGC-AGTCGACTGAGCTCCTGCAC
66 GGGGGGATCGGGTC-AATCCTCGGCTTGCGCATTATGCCTCTCCGA-TCGGCTGAGCACCTGCAC
* *
26955997 GCCCGTTTCGTGGGTTGGCTTAGGCATAAG
129 GCACGTTTCGTGGGTTGGCTTAGGCATACG
* * * * ** *
26956027 GAGCTCA-TTCCATGTCTAA-ACCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCGATAGCAC
1 GAGTTCATTTCCA-GTCTAAGA--TCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGATAGCAC
* * * * ** * * * *
26956089 GTAGAGGGGGATCGAGTCGATCCTCGGCTTGCACATTATGCCTTTTTGGTCGGCTCAACACCCGC
63 GTAG-GGGGGATCGGGTCAATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCACCTGC
* * ***
26956154 ACGCTCGTTTCGTGGGTTGACTTATTTATACG
127 ACGCACGTTTCGTGGGTTGGCTTAGGCATACG
* * *
26956186 GAGTTCATTTCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCA
1 GAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGATAGCACGTA
* * ** *
26956251 GGGGGGA-CTGGGTCAATCC-CTGGCTTGTGCATTTTATCTCTCCGATCGGCTGAGCGCCTGCAC
66 GGGGGGATC-GGGTCAATCCTC-GGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCACCTGCAC
*
26956314 GCACATTTCGTGGGTTGGCTTAGGCATACG
129 GCACGTTTCGTGGGTTGGCTTAGGCATACG
26956344 GAGTTCATT
1 GAGTTCATT
26956353 CCATGTCCAA
Statistics
Matches: 251, Mismatches: 64, Indels: 22
0.74 0.19 0.07
Matches are distributed among these distances:
157 7 0.03
158 120 0.48
159 117 0.47
160 7 0.03
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
GAGTTCATTTCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGATAGCACGTA
GGGGGGATCGGGTCAATCCTCGGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCACCTGCACGC
ACGTTTCGTGGGTTGGCTTAGGCATACG
Found at i:26957095 original size:26 final size:26
Alignment explanation
Indices: 26957066--26957118 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26957056 GTTGACTTAG
* *
26957066 GCATACGGAGTTTA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCCT-AGTCTAA
26957092 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
26957118 G
1 G
26957119 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:26957708 original size:367 final size:364
Alignment explanation
Indices: 26957016--26958017 Score: 1150
Period size: 367 Copynumber: 2.7 Consensus size: 364
26957006 GCGCATCCTA
* * * * *
26957016 CCTCTCTGGTCAGCTGAGTGCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTAT
1 CCTCTTTGGTCAGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GAAGTTCAT
* *
26957081 CCTCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAG
65 CCCCAGTCTAAGCATACA-AGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAG
* *
26957146 CAGGATCGACAGCACGCAGGGGGGACTAGGCCGATCCCCGGCTTGCGTATTTTGCCTCTCCGGTC
129 CAGGATCGACAGCACGCAGGGGGGAC-AGACCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTC
* * * * **
26957211 GATTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAA
193 GACTGAG-TCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAA
*** * * * *
26957276 GCCCCAGTCAAATTGAGGGTTGTGGCAGCAAGACCAGCAGCGGGATAGGCAGCATGCAAAGGGGG
257 GCCCCAGTCAAAGCAAGGGTTGTGGCAGCAAGACCAGCAACAGGATAGACAGCACGCAAAGGGGG
* ** *
26957341 ATCGGTCTAATCCCTGACTTGCGCATTATGCCTC-TCCGATCG
322 ATCGGACTAATCCCCAACTTGCACATTATGCCTCTTCCGATCG
* * * * *
26957383 CCTCTTTGGTCGGCTGAGTGCCCGTACGCTCATTTTGTGGGTTGACTTAGGCATATGAAGATCAT
1 CCTCTTTGGTCAGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GAAGTTCAT
* * * *
26957448 CCCCAGTCTAAGCATACGAAGTTCATTCCCAGT-TCGAGATTGGACCGGATCGAAGGTTGCGACA
65 CCCCAGTCTAAGCATAC-AAGTTCATTCCCAGTCT-AAGATCGAACCGGATCGAGGGTTGCGACA
* * * * *
26957512 GCAGGATCGACAGCGCGCAGGGGGGATCAGACCGATCCTCGGCTTACGCATTCTGCCTCTTCGGT
128 GCAGGATCGACAGCACGCAGGGGGGA-CAGACCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGT
** * *
26957577 CGACTGAGTGCCCGCATACTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTACATTCCGTGTCTA
192 CGACTGAGT-CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTA
* * * * * * *
26957642 AGACCCAGTCAGAGCAAGGGTTGTGGCAGCAGGACC-GACAACATGATAGACGGCGCGCAGAGGG
256 AGCCCCAGTCAAAGCAAGGGTTGTGGCAGCAAGACCAG-CAACAGGATAGACAGCACGCAAAGGG
* * * * *
26957706 GGATCGGACTGATCCCCAACTTGTACATTATGCCTCTTCGGTTGG
320 GGATCGGACTAATCCCCAACTTGCACATTATGCCTCTTCCGATCG
* * * * *
26957751 CCTCTTCGGTCAGTTGAGTGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACAGAGTTCAC
1 CCTCTTTGGTCAGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGA-AGTTCAT
* * * * *
26957816 CCCCAGTCTAAGTATACAAACTTCATTCCCAGTCTAAGATCAAACCGAATCGAGGGTTGCGGCAG
65 CCCCAGTCTAAGCATAC-AAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAG
* * * * *
26957881 CAGGATCGATAGCATGCAGGGGGGACCAGACCGATCCCCGACTTGCATATTCTGCCTCTCCGGCC
129 CAGGATCGACAGCACGCAGGGGGGA-CAGACCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTC
** * *
26957946 GACTGAGCTTTCACACGCCCGTTTCGTGGGTTGGCTTAGGCATA-GAGAGCT-CATTCCATGTCT
193 GACTGAG-TCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-GAG-TACATTCCATGTCT
26958009 AAGCCCCAG
255 AAGCCCCAG
26958018 CTGAACCGAG
Statistics
Matches: 527, Mismatches: 97, Indels: 21
0.82 0.15 0.03
Matches are distributed among these distances:
366 2 0.00
367 298 0.57
368 224 0.43
369 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (364 bp):
CCTCTTTGGTCAGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGAAGTTCATC
CCCAGTCTAAGCATACAAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGCA
GGATCGACAGCACGCAGGGGGGACAGACCGATCCCCGGCTTGCGTATTCTGCCTCTCCGGTCGAC
TGAGTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCC
CAGTCAAAGCAAGGGTTGTGGCAGCAAGACCAGCAACAGGATAGACAGCACGCAAAGGGGGATCG
GACTAATCCCCAACTTGCACATTATGCCTCTTCCGATCG
Found at i:26957832 original size:26 final size:26
Alignment explanation
Indices: 26957811--26957860 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
26957801 GCATACAGAG
26957811 TTCACCCCCAGTCTAAGTATACAAAC
1 TTCACCCCCAGTCTAAGTATACAAAC
**
26957837 TTCATTCCCAGTCTAAG-AT-CAAAC
1 TTCACCCCCAGTCTAAGTATACAAAC
26957861 CGAATCGAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.23
25 2 0.09
26 15 0.68
ACGTcount: A:0.34, C:0.32, G:0.08, T:0.26
Consensus pattern (26 bp):
TTCACCCCCAGTCTAAGTATACAAAC
Found at i:26959054 original size:26 final size:26
Alignment explanation
Indices: 26959025--26959077 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26959015 GTTGACTTAG
* *
26959025 GCATACGGAGTTTA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCCT-AGTCTAA
26959051 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
26959077 G
1 G
26959078 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:26959809 original size:26 final size:26
Alignment explanation
Indices: 26959757--26959809 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26959747 GTTGACTTAG
*
26959757 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
26959783 GCATACGTAGTTCATTCCCAATTTAA
1 GCATACGAAGTTCATCCCCAATCTAA
26959809 G
1 G
26959810 ACTGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:26959862 original size:366 final size:367
Alignment explanation
Indices: 26958971--26959988 Score: 1121
Period size: 366 Copynumber: 2.8 Consensus size: 367
26958961 GCTTGCGCAT
* * * * *
26958971 CCTACCTCTCTGG-TCAGCTGAGTGCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAG
1 CCTACCTCTTTGGCTGA-CTGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAG
* * * * *
26959035 TTTATCCTCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGAACCGGATCGAGGGTTGC
65 TTCATCCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGC
** * *
26959100 GACAGCAGGATCGACAGCACGCAGGGGGGA-CTAGGCCGATCCCCGGCTTGCGTATTTTGCCTCT
129 GGTAGCAGGATCGACAGCACGCAGGGGGGACCGA-GCCGATCCCCGGCTTGCGCATTTTGCCTCT
* * * * *
26959164 CCGGTCGATTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCAC
193 TCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCTC
* * * *** *
26959229 ATCTAAGCCCCAGCTGGACCGAAGGTTGTGGCAGCAGGACCAGGTGCGGGATCGGCAGGACGCAG
258 GTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCAACAGCGGGATCGGCAGCACGCAG
* *
26959294 AGGGGGACTGGGCTGATCCCCAGCTTGCGCATTATGCTTCTCCGA
323 AGGGAGACTGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGA
* * * * *
26959339 CCGACCTCTTCGTCTGGCTGA--GCACCGCACGCTCGTTTCT-TGGGTTGACTTAGGCATATGGA
1 CCTACCTCTTTGGCTGACTGAGTGC-CCGCACGCTCGTTT-TGTGGGTTGACTTAGGCATACGGA
* * * * * * *
26959401 GTTCATCCCGAATCTAAGCATATGGAGTTGATTTCCAGTCTAAGATCAGATCGGATCGAAGGTTG
64 GTTCATCCCCAGTCTAAGCATA-CGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTG
* * * * *
26959466 CGGTAGCAAGATCGACAACACGTA-GGGGGACCGAGCCGATCTCCGACTTGCGCATTTTGCCTCT
128 CGGTAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTTTGCCTCT
* * * *
26959530 TCGACCGACTGAGCATCCGCACGATCGTTTTGTGGGTTGGCTTAGGCATACGGAGTACATTCCTC
193 TCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCTC
* *
26959595 GTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTAGGACCAACAGCGGGA-C-GCAGCACGCAG
258 GTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCAACAGCGGGATCGGCAGCACGCAG
* *
26959658 AGGGAGA-TCGGGCTGATCCTC-GACTTGTGCATTATGCCTCTCCGA
323 AGGGAGACT-GGGCTGATCCCCAG-CTTGCGCATTATGCCTCTCCGA
* * *
26959703 CCTACCTCTTTGGCTGACTGAGTGCCCGTACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGT
1 CCTACCTCTTTGGCTGACTGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGT
* * * * *
26959768 TCATCCCCAGTCTAAGCATACGTAGTTCATTCCCAATTTAAGA-CTGGATCAGACCGAGGGTTAC
66 TCATCCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATC-GGATCGGATCGAGGGTTGC
** * * * *
26959832 GGTAGCAGGATCGGTAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTC-T
129 GGTAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTTTGCCTCTT
*** * * *
26959896 CTGGCC-AGCTGAGTGGCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGGT-CATTCC
194 C-GGCCGA-CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA-GTACATTCC
* * *
26959959 AT-GTCTAAACCCCAACCGGATCGAGGGTTG
256 -TCGTCTAAGCCCCAGCCGGACCGAGGGTTG
26959989 GCTTAGGCAT
Statistics
Matches: 536, Mismatches: 97, Indels: 36
0.80 0.14 0.05
Matches are distributed among these distances:
363 2 0.00
364 67 0.12
365 104 0.19
366 240 0.45
367 109 0.20
368 13 0.02
369 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (367 bp):
CCTACCTCTTTGGCTGACTGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGT
TCATCCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGG
TAGCAGGATCGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTTTGCCTCTTCG
GCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCTCGTC
TAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCAACAGCGGGATCGGCAGCACGCAGAGG
GAGACTGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCGA
Found at i:26960748 original size:26 final size:26
Alignment explanation
Indices: 26960719--26960770 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
26960709 TTGACTTAGA
26960719 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
26960745 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
26960771 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:26961110 original size:26 final size:26
Alignment explanation
Indices: 26961074--26961126 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26961064 GTTGACTTAG
*
26961074 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
26961100 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
26961126 G
1 G
26961127 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:26961480 original size:26 final size:26
Alignment explanation
Indices: 26961444--26961494 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
26961434 TGACTTAGGG
*
26961444 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAGTCTAAGC
*
26961470 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
26961495 ATTAGACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Found at i:26961828 original size:26 final size:26
Alignment explanation
Indices: 26961798--26961850 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26961788 GTTGACTTAG
26961798 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26961824 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26961850 G
1 G
26961851 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26961840 original size:356 final size:355
Alignment explanation
Indices: 26960696--26962104 Score: 1485
Period size: 356 Copynumber: 3.9 Consensus size: 355
26960686 CGCTTGTACG
* *
26960696 CTCGTTTCGTGGTTTGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * *
26960761 CCAGTCTAAGATCAGATCGGATCGAGGGTTACGGCAGTAGGATCGACAGCACACAAGGGGGATCA
66 CCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGACAGCACACAAGGGGGATCA
* * * * * *
26960826 GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCGTTTCGTG
131 AGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCATTTCGTG
* *
26960891 GGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGACA
196 GGTTGGCTTAGGCATACGGAGCT-CATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCA
* ** * * *
26960955 GCAGGACCGGTAGCATGCAGAGGAGGACCAGGTTTG-TCCCCGACTTGCCCATTATGCCTTTCTG
260 GCAGGACCGGTAGCACGCAGAGG-GGACC-GGGCTGATCCCCGACTTGCGCATTATGCCTCTCCG
** * * ** *
26961019 GCCGGCCTCTCTGGCCGGTTTAATGCCCGCACA
323 ATCGGCCTCTCTGGCCGGATGAGCGTCCGCACA
*
26961052 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
26961117 CCAATCTAAGATCGGACC-AGACCGAGGGTTGTGACAGCAGGATC-AGCAGTACACAAGGGGGAC
66 CCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGACAGCAGGATCGA-CAGCACACAAGGGGGAT
** * *
26961180 CGGGCCGATCCTC-AGCTTGCGCATTCTGCCTCTCCGA-CTGGCTGAGCGCTCGCACGCCCATTT
129 CAAGCCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGATC-GGCTGAGCGCCCGCACGCCCATTT
* * *
26961243 CGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAACTGGATCGAGGGTTGTG
192 CGTGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTG
* ** ** * *
26961308 GCAGCGGGACTGGCAGCGAGATTGACAGCATACAGAGGGGGATTGGGCTGATCCTC-AGCTTACG
257 GCAGC---A--GG-ACCG-G--T---AGCACGCAGA-GGGGACCGGGCTGATCCCCGA-CTTGCG
* * *
26961372 CATTATGCCTCTCCGATCGGCCTCTCCGGCCGGCTGGGCGTCCGCACA
308 CATTATGCCTCTCCGATCGGCCTCTCTGGCCGGATGAGCGTCCGCACA
* * * *
26961420 CTCATTTTGTGGGTTGACTTAGGGATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
* * * ** *
26961485 CCAGTCTAAGATTAGACCGAATCGAGGGTTGCGACAGCAAGATCGACAGCACGTATGGGGGATCA
66 CCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGACAGCACACAAGGGGGATCA
* * ** * * * *
26961550 AGTCGATCCCCGACTTGCGCATTTTGCCTCTCCGATCTACGGAGCGCCTGCACGCTCGTTTCGTG
131 AGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCATTTCGTG
** * *
26961615 GGTTGGCTTAGGCATACGGAG-TACATTCTGTGTTTAAGCCCCAACCAGACCGAGGGTTGTGGCA
196 GGTTGGCTTAGGCATACGGAGCT-CATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCA
* * *
26961679 GCAGGATCGGTAGCACGTAGAGGGGACCCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCGA
260 GCAGGACCGGTAGCACGCAGAGGGGA-CCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGA
* * * *
26961744 TCGACCTCTTTGGTCGGATGAGCGTCCGCACG
324 TCGGCCTCTCTGGCCGGATGAGCGTCCGCACA
*
26961776 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * ** ** *
26961841 CCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGTCAGTAGGATCGGTAGCACGTAGGGGGGA-C
66 CCAGTCTAAGATCAGACCGAACCGAGGGTTGC-GACAGCAGGATCGACAGCACACAAGGGGGATC
* * * * * * *
26961905 CAGATCGATCCCCGACTTGCGCATTCTGCCTTTCC-AGTCGGTTGAGCACCCGCACACCCATTTT
130 AAG-CCGATCCCCGACTTGCGCATTCTGCCTCTCCGA-TCGGCTGAGCGCCCGCACGCCCATTTC
* * *
26961969 GTGGGTTGGCTTAGGCAT-CGGGAGCTCATTTCATGTCTAAGCCCTAGTCC-GA-CGAGGGTTGT
193 GTGGGTTGGCTTAGGCATAC-GGAGCTCATTCCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGT
* * * * * *
26962031 GGCAGCGGGACCGGTAGCACGCAGAGAGGGATCGGGCCGACCCCCGACTTGTGTATTATGCCTCT
256 GGCAGCAGGACCGGTAGCACGCAGAG-GGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCT
*
26962096 TCGATCGGC
320 CCGATCGGC
26962105 TCAACGCCCG
Statistics
Matches: 876, Mismatches: 143, Indels: 68
0.81 0.13 0.06
Matches are distributed among these distances:
355 7 0.01
356 451 0.51
357 114 0.13
358 3 0.00
359 2 0.00
361 3 0.00
362 6 0.01
363 3 0.00
365 2 0.00
367 6 0.01
368 273 0.31
369 6 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (355 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGACAGCACACAAGGGGGATCA
AGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCATTTCGTG
GGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAG
CAGGACCGGTAGCACGCAGAGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATC
GGCCTCTCTGGCCGGATGAGCGTCCGCACA
Found at i:26963410 original size:26 final size:26
Alignment explanation
Indices: 26963370--26963422 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26963360 GTTGACTTAG
* *
26963370 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAATCTAA
* *
26963396 GCATATGGAGCTCATTCCCAATCTAA
1 GCATACGGAGCTCATCCCCAATCTAA
26963422 G
1 G
26963423 ATCGGACCGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAATCTAA
Found at i:26963754 original size:26 final size:26
Alignment explanation
Indices: 26963725--26963777 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26963715 GTTGACTTAG
*
26963725 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
26963751 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
26963777 G
1 G
26963778 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:26964997 original size:26 final size:26
Alignment explanation
Indices: 26964967--26965019 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26964957 GTTGACTTAG
*
26964967 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
26964993 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26965019 G
1 G
26965020 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26965365 original size:26 final size:26
Alignment explanation
Indices: 26965335--26965387 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26965325 GTTGACTTAG
26965335 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
26965361 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
26965387 G
1 G
26965388 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:26965686 original size:358 final size:363
Alignment explanation
Indices: 26964930--26965720 Score: 854
Period size: 358 Copynumber: 2.2 Consensus size: 363
26964920 CTCTGGTCGG
*
26964930 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
* ** * * *
26964995 ATACAGAGTTCATTCCTAGTCTAAGATTGGACCGGATCGATTGTTACGACAGTAGGATCGATAGC
66 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGATGGTTACGACAGTAAGATCGACAGC
* * * *
26965060 ACGCAGATGGGATCTTGTCGATCCCCAGCTTGCGCATTCTGTCTCTTCAGCTGGCTGAGCTCCCA
131 ACGCAGATGGGATCTGGTCGA--CCCA-C-T-CGCATTCTGCCTCTTCAGCTGACTGAGCACCCA
* * * * *
26965125 CACGCTCGTTTTACGGGTTGGCTTTGTCATACGGAGTATATTCCACATCTAAGCCCCAGCCAGAC
191 CACGCTCGTTTCACGGGTTAGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGCCAGAC
* * * ** * * * *
26965190 CGAGGGTTGTGGCAGCAGGACTGGCAGCGGGATTAGTAGCACGCAGAGGGGAACCGGCTTGATCC
256 CGAGGGTTGTGGCAGCAGAACCGACAGCAAGATGAGCAGCACACAGAGGGGAACCGGCTTAATCC
* ** * * *
26965255 TCGGCTTGTACATTATGCCTCTCCGGTCGGCCTCTCCGACCGG
321 TCGGCTTGTACATTATGCCTCTCCGGCCGAACACGCCGACCGA
* * *
26965298 TTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
* *
26965363 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGA-GGATTGCGACAGTAAGATCGACAG
66 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGATGG-TTACGACAGTAAGATCGACAG
**
26965427 CACGCAGGA-GGGATC-GG-CTGA-CC-C-C-CATTCTGCCTCTTCAG-TCGACTGAGCACCCGT
130 CACGCA-GATGGGATCTGGTC-GACCCACTCGCATTCTGCCTCTTCAGCT-GACTGAGCACCCAC
** * * * *
26965484 ACGCTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGGGCT
192 ACGCTCGTTTCACGGGTTAGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGCCAGACC
*
26965549 GAGGGTTGTGGCAGCAGAACCGACAGCAAGATCGA-CATCACACAGAGTGGG-ACCGAGC-TAAT
257 GAGGGTTGTGGCAGCAGAACCGACAGCAAGAT-GAGCAGCACACAGAG-GGGAACCG-GCTTAAT
* ** *
26965611 CC-CTGGCTTGTGCATTATGCCTCTTTGGCCGAACACGCCGTCCGA
319 CCTC-GGCTTGTACATTATGCCTCTCCGGCCGAACACGCCGACCGA
* * * * * * *
26965656 CTGAGCGCCCACACGCTCATTTCGTGGGTTGGCTTAGGTATACGAAGTACAT-TCCATGTCTAAG
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAG
26965720 C
65 C
26965721 CCCAGCCGGA
Statistics
Matches: 355, Mismatches: 59, Indels: 28
0.80 0.13 0.06
Matches are distributed among these distances:
357 5 0.01
358 206 0.58
359 7 0.02
362 1 0.00
364 2 0.01
366 1 0.00
367 4 0.01
368 127 0.36
369 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (363 bp):
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGATGGTTACGACAGTAAGATCGACAGC
ACGCAGATGGGATCTGGTCGACCCACTCGCATTCTGCCTCTTCAGCTGACTGAGCACCCACACGC
TCGTTTCACGGGTTAGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGCCAGACCGAGG
GTTGTGGCAGCAGAACCGACAGCAAGATGAGCAGCACACAGAGGGGAACCGGCTTAATCCTCGGC
TTGTACATTATGCCTCTCCGGCCGAACACGCCGACCGA
Found at i:26965904 original size:26 final size:26
Alignment explanation
Indices: 26965874--26965927 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
26965864 GGTTGACTTT
*
26965874 AGCATACGAAGTTCATCCCCAGTCTA
1 AGCATACGAAGTTCATCCCCAATCTA
* *
26965900 AGCATACGGAGTTCATTCCCAATCTA
1 AGCATACGAAGTTCATCCCCAATCTA
26965926 AG
1 AG
26965928 ATCGGATAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (26 bp):
AGCATACGAAGTTCATCCCCAATCTA
Found at i:26967867 original size:26 final size:26
Alignment explanation
Indices: 26967838--26967890 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26967828 GTTGACTCAG
*
26967838 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
26967864 GCATACATAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
26967890 G
1 G
26967891 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:26969859 original size:158 final size:158
Alignment explanation
Indices: 26969466--26969966 Score: 526
Period size: 158 Copynumber: 3.2 Consensus size: 158
26969456 CCAAGTCTAA
* * * * * ** *
26969466 GCATACGGAGTTCATTCCCAGTTTTAGATCGGATCGGACCGAGGTTTGCGATAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * *
26969531 GCACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCACATTATGCCTCTCCGGCCGGCTGAGTGCC
66 GCACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCC
* * * *
26969596 TACACGCCCGTTTCATGGGTTGGCTTAG
131 TGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * * * *
26969624 GCAT-GGGAGCTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCTGCGGGA-CTA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGA
* * * * * *
26969685 GCAGCACGCAGAGGGGGACCAGGTC-ATTCCCCGGCTTGCGCATTATGCCTCTTCGGTTGGCTCA
64 -CAGCACGCAG-GGGGGATCGGGTCGA-TCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGA
* * *
26969749 GCGCCTGTATGCTCGTTTCGTGGGTTGACTTAT
126 GCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
* *
26969782 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGTGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * *
26969847 GCATGTAGGGGGGATCGGGTCGATCCTCAGCTGGCGCATTCTACCTCTCCGATCGGCTGAGCGCC
66 GCACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCC
*
26969912 CGCACGCTCGTTTCGTGGGTTGACTTAG
131 TGCACGCTCGTTTCGTGGGTTGACTTAG
* *
26969940 GCTTACGGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
26969967 CATACAGAGT
Statistics
Matches: 272, Mismatches: 61, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
156 4 0.01
157 44 0.16
158 173 0.64
159 46 0.17
160 5 0.02
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCC
TGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:26970110 original size:184 final size:184
Alignment explanation
Indices: 26969782--26970151 Score: 449
Period size: 184 Copynumber: 2.0 Consensus size: 184
26969772 GTTGACTTAT
* ** *
26969782 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGTGGCAGCAAGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAAGATCGACA
*** * * * * *
26969847 GCATGTAGGGGGGATCGGGTCGATCCTCAGCTGGCGCATTCTACCTCTCCGATCGGCTGAGCGCC
66 GCACACAGGGGGGACCGGGTCGATCCCCAGCTGACACATTCTACCTCTCCGACCGGCTGAGCGCC
* * *
26969912 CGCACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATCCCCA-GTCTAA
131 CGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCAT-CCCATGTCTAA
* * * * *
26969966 GCATACAGAGTTCTTTCTCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGATC-AGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAAGATCGA-C
* *
26970030 AGCACACAGGGGGGACCGGG-CTGATCCCCAGCTTACACATTCTACCTCTCCGGCCGGCTGAGCG
65 AGCACACAGGGGGGACCGGGTC-GATCCCCAGCTGACACATTCTACCTCTCCGACCGGCTGAGCG
* * * * *
26970094 CCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAA
129 CCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATCCCATGTCTAA
26970150 GC
1 GC
26970152 CCCAGCTGGA
Statistics
Matches: 156, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
183 5 0.03
184 151 0.97
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCAAGATCGACA
GCACACAGGGGGGACCGGGTCGATCCCCAGCTGACACATTCTACCTCTCCGACCGGCTGAGCGCC
CGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATCCCATGTCTAA
Found at i:26970280 original size:500 final size:500
Alignment explanation
Indices: 26969390--26970495 Score: 1418
Period size: 500 Copynumber: 2.2 Consensus size: 500
26969380 GCACATTATG
* * * *
26969390 CCTCTCCGACCGGTTGAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT
1 CCTCTCCGATCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * *
26969455 CCCAAGTCTAAGCATACGGAGTTCATTCCCAGTTTTAGATCGGATCGGACCGAGGTTTGCGATAG
66 CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGATAG
* * * * * * *
26969520 CAGGATCGGCAGCACGCAGGGGGGATCGGGTCGATCCTCGGCTTGCACATTATGCCTCTCCGGCC
131 CAGGATCAGCAGCACACAGGGGGGACCGGGTCGATCCCCAGCTTACACATTATACCTCTCCGGCC
*
26969585 GGCTGAGTGCCTACACGCCCGTTTCATGGGTTGGCTTAGGCATGGGAGCTCATTCCATGTCTAAG
196 GGCTGAGCGCCTACACGCCCGTTTCATGGGTTGGCTTAGGCATGGGAGCTCATTCCATGTCTAAG
* * * * *
26969650 CCCCAGCCGGACCGAGGGTTGTGGCTGCGGGACTAGCAGCACGCAGAGGGGGACCAGGTCATTCC
261 CCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACGAGCAACACACAGAGGGGGACCAGGCCATTCC
** * * * * *
26969715 CCGGCTTGCGCATTATGCCTCTTCGGTTGGCTCAGCGCCTGTATGCTCGTTTCGTGGGTTGACTT
326 CCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACACCCGCACGCTCGTTTCGTGGGTTGACTT
* * *
26969780 ATGCATACGGAGTTCATTCCCAGTCTAAGATC-AGATTGGACCGAGGGTTGTGGCAGCAAGATCG
391 ATGCATACAGAGTTCATTCCCAATCTAAGATCGA-ATTAGACCGAGGGTTGTGGCAGCAAGATCG
*** * * *
26969844 ACAGCATGTAGGGGGGATCGGGTCGATCCTCAG-CTGGCGCATTCTA
455 ACAGCACACAGGGGGGACCGGGTCGATCC-CAGTCTGGCACATTCGA
* * *
26969890 CCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCAT
1 CCTCTCCGATCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * *
26969955 CCCCAGTCTAAGCATACAGAGTTCTTTCTCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAG
66 CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGATAG
*
26970020 CAGGATCAGCAGCACACAGGGGGGACCGGG-CTGATCCCCAGCTTACACATTCTACCTCTCCGGC
131 CAGGATCAGCAGCACACAGGGGGGACCGGGTC-GATCCCCAGCTTACACATTATACCTCTCCGGC
* * *
26970084 CGGCTGAGCGCCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTA
195 CGGCTGAGCGCCTACACGCCCGTTTCATGGGTTGGCTTAGGCAT-GGGAGCTCATTCCATGTCTA
* * *
26970149 AGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCGA-CAACACACAGA-GGGGATCGGGCCGA
259 AGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGA-CGAGCAACACACAGAGGGGGACCAGGCC-A
*
26970212 -TCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACACCCGCACGCTCGTTTCGTGGGTTG
322 TTCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACACCCGCACGCTCGTTTCGTGGGTTG
* * *
26970276 ACTTATGCATACAGAGTTCATTCCCAATCTAAGATCGAATTAGACCGAGGGTTGTGGTAGTAGGA
387 ACTTATGCATACAGAGTTCATTCCCAATCTAAGATCGAATTAGACCGAGGGTTGTGGCAGCAAGA
* * * * * * *
26970341 TCGATAGCGCACATGGGGGACCGTGTCGATCCCCGTCTTGCACATTCGG
452 TCGACAGCACACAGGGGGGACCGGGTCGATCCCAGTCTGGCACATTCGA
* * * * * *
26970390 TCTCTCCGGTCGGCTGAGCGCCTGTATGCTCGTTTTCTTGGGTTGGCTTAGGCATACGGAGTTCA
1 CCTCTCCGATCGGCTGAGCGCCCGCATGCTCG-TTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * *
26970455 T-TCCATGTCTAAGCAAACGGAGCTT-ATTCCCAATCTAAGAT
65 TCCCCA-GTCTAAGCATACAGAG-TTCATTCCCAGTCTAAGAT
26970496 TTTGAGCCAC
Statistics
Matches: 520, Mismatches: 77, Indels: 17
0.85 0.13 0.03
Matches are distributed among these distances:
499 3 0.01
500 393 0.76
501 120 0.23
502 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (500 bp):
CCTCTCCGATCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGATAG
CAGGATCAGCAGCACACAGGGGGGACCGGGTCGATCCCCAGCTTACACATTATACCTCTCCGGCC
GGCTGAGCGCCTACACGCCCGTTTCATGGGTTGGCTTAGGCATGGGAGCTCATTCCATGTCTAAG
CCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACGAGCAACACACAGAGGGGGACCAGGCCATTCC
CCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACACCCGCACGCTCGTTTCGTGGGTTGACTT
ATGCATACAGAGTTCATTCCCAATCTAAGATCGAATTAGACCGAGGGTTGTGGCAGCAAGATCGA
CAGCACACAGGGGGGACCGGGTCGATCCCAGTCTGGCACATTCGA
Found at i:26970360 original size:158 final size:157
Alignment explanation
Indices: 26969966--26970467 Score: 391
Period size: 158 Copynumber: 3.2 Consensus size: 157
26969956 CCCAGTCTAA
* * * * *
26969966 GCATACAGAGTTCTTTCTCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAGGATC-AGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATTAGACCGAGGGTTGTGGTAGCAGGATCGA-C
* * * * *
26970030 AGCACACAGGGGGGACCGGGCTGATCCCCAGCTTACACATTCTACCTCTCCGGCCGGCTGAGCGC
65 AGCACACA-GGGGGACCGGGCCGATCCCCAGCTTACACATTATACCTCTCCGGCCGGCTCAACAC
* * *
26970095 CTGCATGCCCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCCCGTTTCGTGGGTTGACTTAG
** * ** * ** * * * *
26970124 GCATAGGGAGCTCATT-CCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACAGAGTTCATTCCCA-GTCTAAGATCGAATTAGACCGAGGGTTGTGGTAGCAGGATCGAC
* * ** * * * *
26970188 AACACACAGAGGGGATCGGGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACAC
65 AGCACACAG-GGGGACCGGGCCGATCCCCAGCTTACACATTATACCTCTCCGGCCGGCTCAACAC
* *
26970253 CCGCACGCTCGTTTCGTGGGTTGACTTAT
129 CCGCACGCCCGTTTCGTGGGTTGACTTAG
* * *
26970282 GCATACAGAGTTCATTCCCAATCTAAGATCGAATTAGACCGAGGGTTGTGGTAGTAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATTAGACCGAGGGTTGTGGTAGCAGGATCGACA
* * * * **** * * * *
26970347 GCGCACATGGGGGACCGTGTCGATCCCC-GTCTTGCACATTCGGTCTCTCCGGTCGGCTGAGCGC
66 GCACACA-GGGGGACCGGGCCGATCCCCAG-CTTACACATTATACCTCTCCGGCCGGCTCAACAC
* * * * * *
26970411 CTGTATGCTCGTTTTCTTGGGTTGGCTTAG
129 CCGCACGCCCG-TTTCGTGGGTTGACTTAG
*
26970441 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACAGAGTTCATTCCCA-GTCTAAG
26970468 CAAACGGAGC
Statistics
Matches: 263, Mismatches: 73, Indels: 15
0.75 0.21 0.04
Matches are distributed among these distances:
157 4 0.02
158 218 0.83
159 41 0.16
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAATTAGACCGAGGGTTGTGGTAGCAGGATCGACA
GCACACAGGGGGACCGGGCCGATCCCCAGCTTACACATTATACCTCTCCGGCCGGCTCAACACCC
GCACGCCCGTTTCGTGGGTTGACTTAG
Found at i:26971909 original size:26 final size:26
Alignment explanation
Indices: 26971880--26971932 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26971870 GTTGACTTAG
*
26971880 GCATACGGATTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
26971906 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
26971932 G
1 G
26971933 ATTGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:26972165 original size:352 final size:352
Alignment explanation
Indices: 26971465--26972482 Score: 1026
Period size: 352 Copynumber: 2.9 Consensus size: 352
26971455 TGATCGTCGG
* * * * * * * *
26971465 CTTGCGCATTATGCCTCTCCGGACCGGCTAAACACCCGTATGCTCGTTTCGTAGGTTGACTTAGG
1 CTTGCACATTATGCCTCTCCGG-CAGCCT--ACTCCCGCATGCTCATTTTGTGGGTTGACTTAGG
* * * *
26971530 CATATGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTTAGATCGGACCGGATC
63 CATATGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGAATCGGATC
* * * * * * * *
26971595 GAGAGTTGCGACAGTAGGATTGACAGCACGTAAGGGGACTGGGCCGATCCCTGGCTTGCGCATTC
128 GAGGGTTGCGGCAGCAGGATTGAAAGCACGCAAGGGGACCGGGCCGATCCCTGACTTACGCATTC
** * *
26971660 TACCTCTCCGGTCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTAC
193 TACCTCTCCAATCGGCTAAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTAC
* * * *
26971725 ATTCCACGTCTAAGCCCCAATCGGACCGAGGGTTGTGGTAGCAGGACCAGCAACGAGATCCACAG
258 ATTCCACGCCTAAGCCCCAACCGGACCGAGGGTTGTGGCAACAGGACCAGCAACGAGATCCACAG
* * **
26971790 CATGTAGAGGAGGACTGGGCTGATCCCCAA
323 CACGTAAAGGAGGACCAGGCTGATCCCCAA
* *
26971820 CTTGCACATTATGCCTCTCCGATCAGCCT-CT-CCGCGTGCTCATTTTGTGGGTTGACTTAGGCA
1 CTTGCACATTATGCCTCTCCG-GCAGCCTACTCCCGCATGCTCATTTTGTGGGTTGACTTAGGCA
* * * * *
26971883 TACGGATTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAATCGGATCGA
65 TATGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGAATCGGATCGA
* * * * *
26971948 GGGTTGCGGGAGCAGGATTGAAAGCACGCAGGGGGGACCGGGTCGGTCTCTGACTTACGCATTCT
130 GGGTTGCGGCAGCAGGATTGAAAGCACGCA-AGGGGACCGGGCCGATCCCTGACTTACGCATTCT
* * *
26972013 GCCTCTCCAATCGGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACA
194 ACCTCTCCAATCGGCTAAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTACA
* * * * **
26972078 TTCCACGCCTAAGCCCCAACCGGACTGAGGGTTGTGGCAACAGGACCGGCAGCGGGATCGGCAGC
259 TTCCACGCCTAAGCCCCAACCGGACCGAGGGTTGTGGCAACAGGACCAGCAACGAGATCCACAGC
**
26972143 ACGTAAA-GAGGGACCAGGCTGATCCCTGA
324 ACGTAAAGGA-GGACCAGGCTGATCCCCAA
* * * * *
26972172 CTTGCGCATTATGCCTCTCCGGCTGGCTGAGTGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGC
1 CTTGCACATTATGCCTCTCCGGCAGCCT-ACT-CCCGCATGCTCATTTTGTGGGTTGACTTAGGC
* * * * *
26972237 ATATGGAGTTCATCCCCAGTTTCAGCATACGAAGTTCATTCCAATTCTAAGATCAGACT-GGATC
64 ATATGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT-AGAATCGGATC
* * ** * * * * * * * * *
26972301 GAGGGTTGTGGCAGCAGAACCGACAGTACAC-AGAGGGATCAGGCCGATCCCCGGCTTGCGTATT
128 GAGGGTTGCGGCAGCAGGATTGAAAGCACGCAAG-GGGACCGGGCCGATCCCTGACTTACGCATT
* * * * ** * * *
26972365 CCT-CCTCTTCGACCGGCTGAGCGCCCGCATGC-CAGTTTCATGGGTTGGCTGAGGCACAAGGAG
192 -CTACCTCTCCAATCGGCTAAGCGCCCGCACACTCA-TTTCATGGGTTGGCTTAGGCATACGGAG
* * ** * *
26972428 CT-CATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCAGCA
255 -TACATTCCACGCCTAAGCCCCAACCGGACCGAGGGTTGTGGCAACAGGACCAGCA
26972483 GCACGCAAAG
Statistics
Matches: 545, Mismatches: 106, Indels: 25
0.81 0.16 0.04
Matches are distributed among these distances:
351 114 0.21
352 181 0.33
353 4 0.01
354 114 0.21
355 129 0.24
356 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (352 bp):
CTTGCACATTATGCCTCTCCGGCAGCCTACTCCCGCATGCTCATTTTGTGGGTTGACTTAGGCAT
ATGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGAATCGGATCGAG
GGTTGCGGCAGCAGGATTGAAAGCACGCAAGGGGACCGGGCCGATCCCTGACTTACGCATTCTAC
CTCTCCAATCGGCTAAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATT
CCACGCCTAAGCCCCAACCGGACCGAGGGTTGTGGCAACAGGACCAGCAACGAGATCCACAGCAC
GTAAAGGAGGACCAGGCTGATCCCCAA
Found at i:26972570 original size:159 final size:160
Alignment explanation
Indices: 26972269--26972764 Score: 503
Period size: 159 Copynumber: 3.1 Consensus size: 160
26972259 CAGCATACGA
* * * * *
26972269 AGTTCATTCCAAT-TCTAAG-ATCAGACTGGATCGAGGGTTGTGGCAGCAGAACCGACAGTA--C
1 AGTTCATTCC-ATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGC
* * * * *
26972330 ACAGAGGGATCAGGCCGATCCCCGGCTTGCGTATTCCT-CCTCTTCGACCGGCTGAGCGCCCGCA
65 AAAGGGGGATCAGGCCGATCCCCGGCTTGCGCATT-CTGCCTCTTCGATCGGCTGAGTGCCCGCA
* * *
26972394 TGC-CAGTTTCATGGGTTGGCTGAGGCACAAGG
129 CGCTC-GTTTCGTGGGTTGGCTTAGGCACAAGG
* * * *
26972426 AGCTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACC-AGCAGCACGC
1 AGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGA-CAGCACGC
* * * *
26972489 AAAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGTGCCCGCAC
65 AAAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGTGCCCGCAC
* * * * * *
26972554 GCTCGTTTTGTAGGTTGACTTATGCATACGG
130 GCTCGTTTCGTGGGTTGGCTTAGGCACAAGG
* * * *
26972585 AGTTCATTCTCA-GTCTAAG-ATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGT
1 AGTTCATTC-CATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGC
* * ** **
26972648 AAGGGGGGATCAAGCCGATCCCCAACTTGCGCATTCTGCCTCTTCGATCGATTGAGTGCCCGCAC
65 AAAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGTGCCCGCAC
*
26972713 GTTCGTTTCGTGGGTTGGCTTAGGCATTC-A-G
130 GCTCGTTTCGTGGGTTGGCTTAGGCA--CAAGG
26972744 AGTTCATTCCATGTCTAAGCA
1 AGTTCATTCCATGTCTAAGCA
26972765 TACGGAGTTC
Statistics
Matches: 273, Mismatches: 52, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
156 3 0.01
157 42 0.15
158 8 0.03
159 215 0.79
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (160 bp):
AGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCA
AAGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGTGCCCGCACG
CTCGTTTCGTGGGTTGGCTTAGGCACAAGG
Found at i:26973232 original size:26 final size:26
Alignment explanation
Indices: 26973202--26973257 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
26973192 TGGGTTGACT
26973202 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
**
26973228 TAAGCATACGGAGTTCATTTCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
26973254 TAAG
1 TAAG
26973258 ATCGGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:26973955 original size:159 final size:158
Alignment explanation
Indices: 26973533--26973948 Score: 455
Period size: 159 Copynumber: 2.6 Consensus size: 158
26973523 CTCTCCGGTT
* * *
26973533 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTCAGGCATACAGAGTGCATTCCCAATCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTAAGGCATACGGAGTTCATTCCCAATCTAA
* * * *
26973598 GATCAGACCAGACTGAGGGTTGGA-CAGTAGGATCGGCAGCACACAGGGGGGACCGGGCCGATCC
66 GATCAGACCGGACCGAGGGTTGCAGCAGTAGGATCGGCAGCACACAGGGGGGACCGGGCCAATCC
* *
26973662 CAGGCTTGCACATTCTACCTCTCTAGCC
131 CAGGCTTGCACATTATACCTCTCGAGCC
* * * * * * * *
26973690 GACTGAGCGCCCGTACGCCCCTTTCGTGGGTTGGCTTAGGCATA-GGCAGCTCATT-CCATGTCT
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTAAGGCATACGG-AGTTCATTCCCA-ATCT
** ** *** * *
26973753 AAGCCCCAG-CCGGACCGAGGGTTGTGGCAACGGGACCGGCAGCACATAGAGGGGGACCGGGCCA
64 AAG-ATCAGACCGGACCGAGGGTTGCAGCAGTAGGATCGGCAGCACACAG-GGGGGACCGGGCCA
* * *
26973817 ATCCCTGGCTTGCGCATTATGCCTCTTCGA-CC
127 ATCCCAGGCTTGCACATTATACCTC-TCGAGCC
* * *
26973849 GGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTAACTAATGCATACGGAGTTCATTCCCAATCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTAAGGCATACGGAGTTCATTCCCAATCTAA
*
26973914 GATCAGACCGGACCGAGGGTTACAGCAGTAGGATC
66 GATCAGACCGGACCGAGGGTTGCAGCAGTAGGATC
26973949 AACAGCATAC
Statistics
Matches: 203, Mismatches: 47, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
156 4 0.02
157 63 0.31
158 23 0.11
159 105 0.52
160 8 0.04
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.20
Consensus pattern (158 bp):
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTAAGGCATACGGAGTTCATTCCCAATCTAA
GATCAGACCGGACCGAGGGTTGCAGCAGTAGGATCGGCAGCACACAGGGGGGACCGGGCCAATCC
CAGGCTTGCACATTATACCTCTCGAGCC
Found at i:26974463 original size:26 final size:26
Alignment explanation
Indices: 26974433--26974485 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26974423 GTTGACTTAG
26974433 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26974459 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26974485 G
1 G
26974486 ATCGGGCCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26974816 original size:26 final size:26
Alignment explanation
Indices: 26974787--26974839 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26974777 GTTGACTTAG
*
26974787 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
26974813 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26974839 G
1 G
26974840 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26975006 original size:26 final size:26
Alignment explanation
Indices: 26974970--26975022 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26974960 GTTGACTTAG
26974970 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
26974996 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
26975022 G
1 G
26975023 ATAGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:26975055 original size:183 final size:184
Alignment explanation
Indices: 26974676--26975536 Score: 629
Period size: 184 Copynumber: 4.7 Consensus size: 184
26974666 GTAGTAGGAT
* * * * * *
26974676 CGACAGC-GAGATCGACAGCATGCATAAGGGGATCAGGCTGATCCCCGGCTTGCACATTATGCCT
1 CGACAGCAG-GATCGACAGCACGCA-AGGGGGAACAGGCCGATCCTCGGCTTGCACATTCTGCCT
* * *
26974740 CTCCGACCGACTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC
64 CTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC
* *
26974805 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTG
129 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAAGGTTG
* * * *
26974861 CGGCAGCAGGATC-AGTAGCACG-AAGGGGGAACAGGCCGATCCTCGGCTTACGCATTCTGCCTC
1 CGACAGCAGGATCGA-CAGCACGCAAGGGGGAACAGGCCGATCCTCGGCTTGCACATTCTGCCTC
* ** * *
26974924 TCCGGTTAACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCC
65 TCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC
** ** *
26974989 AGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT-AGGATCGGATTAAAGGTTT
130 AGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA-GATCGGACCAAAGGTTG
* * * * * *
26975044 CGACGGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCTCGGTTTGCACATTCTACCTCT
1 CGACAGCAGGATCGACAGCACGCAAGGGGGAACAGGCCGATCCTCGGCTTGCACATTCTGCCTCT
* * * * * *
26975109 TCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAATACAT-TCCA
66 CCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA
** * ** * ** * **
26975173 CGTCTAAGC---CCCAG-CCAGACCGAGGGT-TGTG-GCAG-TAAGACC---GG-T-
131 -GTCTAAGCATACAGAGTTCATTCCCA--GTCTAAGATCAGATCGGACCAAAGGTTG
* * * * * * * * *
26975218 --A-ATG--GGATTGACAGTACGCAGAGAGGGATCGGGCTGATCCCCGACTTACGCAGTATGCCT
1 CGACA-GCAGGATCGACAGCACGCA-AGGGGGAACAGGCCGATCCTCGGCTT--GC---A---CA
* * * * *
26975278 TTCTGGTCGGCCTCTTCGACCGACTGAGCGTCCGCACGCTCATTTCCTGGGTTGACTTAGGCATA
56 TTC---T--GCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* ** *
26975343 CGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGG
116 CGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAAG
*
26975408 GTTA
181 GTTG
* * * *
26975412 C-AGCAGCAGGATCGACAGCACGTAAGGGGGATCGGGCTGATCCTCGGCTTGCACATTCTG-CTA
1 CGA-CAGCAGGATCGACAGCACGCAAGGGGGAACAGGCCGATCCTCGGCTTGCACATTCTGCCT-
** * * * *
26975475 CTCCGGCCGACTGAGTGCCCGCACGCTCGTTTCATGGGTT-AGCTTAGGCATAGGGAGCTCAT
64 CTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGGAGTTCAT
26975537 TCGATGTCTA
Statistics
Matches: 523, Mismatches: 109, Indels: 89
0.73 0.15 0.12
Matches are distributed among these distances:
170 14 0.03
171 19 0.04
172 2 0.00
173 2 0.00
175 1 0.00
176 3 0.01
179 7 0.01
180 6 0.01
181 5 0.01
182 4 0.01
183 159 0.30
184 214 0.41
185 18 0.03
186 4 0.01
187 5 0.01
188 7 0.01
189 8 0.02
192 3 0.01
193 1 0.00
195 3 0.01
196 1 0.00
197 24 0.05
198 13 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (184 bp):
CGACAGCAGGATCGACAGCACGCAAGGGGGAACAGGCCGATCCTCGGCTTGCACATTCTGCCTCT
CCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA
GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAAGGTTG
Found at i:26975374 original size:26 final size:26
Alignment explanation
Indices: 26975338--26975390 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26975328 GTTGACTTAG
*
26975338 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
26975364 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26975390 G
1 G
26975391 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26976596 original size:26 final size:26
Alignment explanation
Indices: 26976560--26976612 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26976550 GTTGACTTAG
*
26976560 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
26976586 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
26976612 G
1 G
26976613 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26976930 original size:160 final size:158
Alignment explanation
Indices: 26976586--26977088 Score: 406
Period size: 158 Copynumber: 3.2 Consensus size: 158
26976576 CCCAGTCTAA
* * * * * * * *
26976586 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAAGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * * * * **** * *
26976651 GTACAC-ATGA-GGGACTGGGCCGATCCCTGGCTTGCCCATTTTGCCTCTCCGGTCGGCTGAGCG
66 --ACACGAAGAGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCTAACCGGCTCAGCA
* * *
26976714 CCCGCATGCCCGTTTCGTGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * ** *
26976744 GCATAGGGAGGTCATT-CCATGTCTAAGGCCTAG-CCCGATCGAGGGTTGTGGTAGC-GAGATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGACC-AGACCAGACCGAGGGTTACGGCAGCAG-GATC-
* * *
26976806 GGCAGCACGAAGAAGGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCT-TCAACCGGCTC
62 GACAACACGAAG-AGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCT-AACCGGCTC
* * *
26976870 AGCACCTGCACGCTCGTTTCATGGGTTGACTTAT
125 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
26976904 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCCGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* * * ** * * *
26976969 ACACGCAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTTTGCCTCTCTGGCTGGCTGAGCGCC
66 ACACGAAGAGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCTAACCGGCTCAGCACC
* * *
26977034 CGTACGGTCGTTTTGTGGGTTGACTTAG
131 CGCACGCTCGTTTCGTGGGTTGACTTAG
*
26977062 GCATACGGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
26977089 CATATGGAGT
Statistics
Matches: 269, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 7 0.03
158 138 0.51
159 16 0.06
160 104 0.39
161 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
ACACGAAGAGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCTAACCGGCTCAGCACC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:26977092 original size:26 final size:26
Alignment explanation
Indices: 26977062--26977111 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26977052 GTTGACTTAG
26977062 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26977088 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
26977112 TAGATTGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26977247 original size:184 final size:184
Alignment explanation
Indices: 26976904--26977260 Score: 434
Period size: 184 Copynumber: 1.9 Consensus size: 184
26976894 GTTGACTTAT
* * *
26976904 GCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCCGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAACGAGGGTTACGGCAGCAGGATCGACA
* * * * * * *
26976969 ACACGCAGGGGGGACCGGGTCGATCCCCGGCTTACGCATTTTGCCTCTCTGGCTGGCTGAGCGCC
66 ACACACAGGGGGGACCGGGCCGATCCCCGGCTTACACATTCTACCTCTCCGGCTGGCTGAGCACC
* * * *
26977034 CGTACGGTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
131 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAA
* * * * *
26977088 GCATATGGAGTTCATTCCCAGTCTTAGATTGGACC-GAATGAAGGGTTGCGGCAGCTA-GATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAACG-AGGGTTACGGCAGC-AGGATCGA
* * *
26977151 CAGCACACAGGGGGGACCGGGCCGATCCTCGGTTTACACATTCTACCTCTCCGG-TCGGCTGAGC
64 CAACACACAGGGGGGACCGGGCCGATCCCCGGCTTACACATTCTACCTCTCCGGCT-GGCTGAGC
* *
26977215 ACCCGCACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCAT
128 ACCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGCTCAT
26977261 TGCATCTCTA
Statistics
Matches: 145, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
183 5 0.03
184 139 0.96
185 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAACGAGGGTTACGGCAGCAGGATCGACA
ACACACAGGGGGGACCGGGCCGATCCCCGGCTTACACATTCTACCTCTCCGGCTGGCTGAGCACC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATCCCCAGTCTAA
Found at i:26977486 original size:502 final size:501
Alignment explanation
Indices: 26976507--26977617 Score: 1455
Period size: 502 Copynumber: 2.2 Consensus size: 501
26976497 CTCGTGTATC
* **
26976507 CTGCCTCTCTAGTCGGCTGAGCGCCCGCACATTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
1 CTGCCTCTCTGGT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
** * *
26976572 CATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAAGGTTGCGG
65 CATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAAGGTTGCGG
* * * * * * *
26976637 CAGCAGGATCGACAGTACACATGAGGGACTGGGCCGATCCCTGGCTTGCCCATTTTGCCTCTCCG
130 CAGCAGGATCGACAGCACACAGGAGGGACCGGGCCGATCCCTGGCTTACACATTCTACCTCTCCG
* * * *
26976702 GTCGGCTGAGCGCCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGGTCATTCCATGTC
195 GTCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATCTC
* * * * * * * *
26976767 TAAGGCCTAGCCCGATCGAGGGTTGTGGTAGCGAGATCGGGCAGCACGAAGAAGGGGATCGGGTC
260 TAAGCCCCAACCCGATCGAGGGTTGTGGTAGCGAGATCCGGCAACACGAAGAAAGGGACCGGGCC
* * * * *
26976832 GATCCCCGGCTTACGCATTATGCCTCTTCAACCGGCTCAGCACCTGCACGCTCGTTTCATGGGTT
325 GATCCCCGGCTTACGCATTATGCCTCTTCAACCGACTCAGCACCCGCACACTCATTTCATGGCTT
* * * **
26976897 GACTTATGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCCGCAGG
390 GACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAACAGG
*
26976962 ATCGACAACACGCAGGGGGGACCGGGTCGATCCCCGGCTTACGCATT
455 ATCGACAACACGCAGGGGGGACCGGGTCGATCCCCAGCTTACGCATT
* * * *
26977009 TTGCCTCTCTGGCTGGCTGAGCGCCCGTACGGTCGTTTTGTGGGTTGACTTAGGCATACGGAGTT
1 CTGCCTCTCTGG-TGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* *
26977074 CATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTTAGATTGGACCGAAT-GAAGGGTTGCG
65 CATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAA-GGTTGCG
* *
26977138 GCAGCTA-GATCGACAGCACACAGGGGGGACCGGGCCGAT-CCTCGGTTTACACATTCTACCTCT
129 GCAGC-AGGATCGACAGCACACAGGAGGGACCGGGCCGATCCCT-GGCTTACACATTCTACCTCT
* *
26977201 CCGGTCGGCTGAGCACCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTGCAT
192 CCGGTCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCAT
* * *
26977266 CTCTACGCCCCAACCCGATCGAGGGTTGTGGTAGC-AGGA-CCGGTAACACGCAGAAAGGGACCG
257 CTCTAAGCCCCAACCCGATCGAGGGTTGTGGTAGCGA-GATCCGGCAACACGAAGAAAGGGACCG
* * * * *
26977329 GGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGACTGATTCAGCGCCCGCACACTCATTTCATG
321 GGCCGATCCCCGGCTTACGCATTATGCCTCTTCAACCGACTCAGCACCCGCACACTCATTTCATG
* *
26977394 GCTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAA
386 GCTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAA
* * *
26977459 CAGGATCGACAGCACATC-GGAGGGGACCGGGTCGATCCCCAGCTTGCGCATT
451 CAGGATCGACAACAC-GCAGG-GGGGACCGGGTCGATCCCCAGCTTACGCATT
* * * * *
26977511 CTACCCCTCCGGTTGGCTGAGCACCCGCACGCTCG-TTCGTGGGTTGGCTTAGGCATACGGAGTT
1 CTGCCTCTCTGG-TGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * **
26977575 CAT-TCCATGTCTAAGCATATGGAGCTCATTCCCAAACTAAGAT
65 CATCCCCA-GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
26977618 TTTGAGCCAC
Statistics
Matches: 527, Mismatches: 74, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
500 3 0.01
501 214 0.41
502 308 0.58
503 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (501 bp):
CTGCCTCTCTGGTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAAGGTTGCGGC
AGCAGGATCGACAGCACACAGGAGGGACCGGGCCGATCCCTGGCTTACACATTCTACCTCTCCGG
TCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATCTCT
AAGCCCCAACCCGATCGAGGGTTGTGGTAGCGAGATCCGGCAACACGAAGAAAGGGACCGGGCCG
ATCCCCGGCTTACGCATTATGCCTCTTCAACCGACTCAGCACCCGCACACTCATTTCATGGCTTG
ACTTATGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAACAGGA
TCGACAACACGCAGGGGGGACCGGGTCGATCCCCAGCTTACGCATT
Found at i:26978955 original size:367 final size:363
Alignment explanation
Indices: 26978246--26980292 Score: 1563
Period size: 367 Copynumber: 5.7 Consensus size: 363
26978236 CCCTTCTGGT
* * * *
26978246 CGACTGGGCGCCTGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC-GATCT
1 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAG-TCT
* * * * **
26978310 AAGCATATGGAGTTCATTCCTATTCTAAGAT-TGAACCGGATCGAGGGTTACAACAGCAGGATCG
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAGGGTTACGGCAGCAGGATCG
* * * * * * * *
26978374 ATAGCACACAGGGGGACCGGGCCGATCCTCGGTTTACGCATTCTACCTCTTCGGTCGACTGAGTG
129 GTAGCACGCAGGGGGATCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGACTGAGCG
* * * *
26978439 CCCGCATGCTTATTTTGTGGGTTGGCTTAGGCATACGGAGTACGTTCCATGTCTAAGCCCCAG-C
194 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTC
* * * * * *
26978503 TAGATCGAGGGTTGTGGTAGCAGGACCGACAGTGAGATC-GACAGCACGCAGAGGGGGATCAGGT
259 -AGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCAG-CAGCACGCAGAGGGGGACCAGGC
* * * **
26978567 TGATCCTCGGCATACGCATTATGCCTCTCCGGTCGGCCTTTTCGA
322 TGATCCCCAGCTTGTGCATTATGCCTCTCC-G-CGGCC-TTTCGA
* * * *
26978612 CCGACTGAGCGCCCGCACACTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCT
1 -CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
* ** *
26978677 AAGCATCCGGAGTTCATTCCCAGTCTAAGATCAGATTGGATCGAGGGTTGCGGCAGCAGGATCGG
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCGG
* * * * * *
26978742 TAGCACGCAAGGGGGATCGAGCCGATCCACAGCTTGCACATTCTACCTCTCCGGTCGAATGAGCA
130 TAGCACGC-AGGGGGATCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGACTGAGCG
** * * *
26978807 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACATAGTACATTCCACGTCTGAGCCCCTGTC
194 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTC
* * * * ** * *
26978872 GGACCGAGGGTTGTGACAGCAGGACCGGCAGCGGGATCAGCAG-ACGTAGAGGGCTATCGGGCTG
259 AGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCAGCAGCACGCAGAGGGGGACCAGGCTG
* *
26978936 ATCCCCAGCTTGTGCATTATACCTCTCTGGCTGGCCTCTTCGA
324 ATCCCCAGCTTGTGCATTATGCCTCTC-CGC-GGCCT-TTCGA
* * * *
26978979 CTGGCTGAGCGCCCGCACACTTGTTT-GATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
1 C-GACTGAGCGCCCGCACGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
* * * * *
26979043 TAAGCATACGAAGTTCATTCCTAGTCTAAGATC-GAACCAGACCAAGGGTTACGGCAGCAGGATC
64 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAGGGTTACGGCAGCAGGATC
* * * * * * * * *
26979107 TGCAGCATGCAGGGGGGA-CCAGGCCGATCCCTGGCTTACGCATTCTGCTTCTCCGATCGACTTA
128 GGTAGCACGCA-GGGGGATCGA-GCCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGACTGA
* * * * *
26979171 GTGCCC-CACGCTCGTTTCATGGGTTGGCTTAGGAATACGGAGTACATTCCATGTCTAAGCCCTA
191 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCA
* * * ** ** * * * ******
26979235 GTCAGACCGAGGGTTATGGCAGTAGGACTTAGGCATATGAAGATGTGCTTGAACCCA-CCTACCA
256 GTCAGACCGAGGGTTGTGGCAGCAGGAC--CGGCA-GCG-AGATCAGC-AGCACGCAGAGGGGGA
* ** * ** *
26979299 CCCGTTTGATCCCCAACTTGTGCATCCTGCCTCT-C-TGG----TCG-
316 CCAGGCTGATCCCCAGCTTGTGCATTATGCCTCTCCGCGGCCTTTCGA
* * * * * * *
26979340 -G-TTGAGCGCCTGCAGGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATCTCCAGTCCA
1 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * *
26979403 AGCATATGGAGTTCATTCCTAGTCTAAGATCGGACTGGATC-------A--GCAGC---A-C-GT
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCGGT
* * ** *** * * *
26979454 ---A-G--GGGGGATCGGGCCGATCCCCAGCTTACATATTCTACCTCTCCAACCGGCTTAGCGTC
131 AGCACGCAGGGGGATCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGACTGAGCGCC
* * ** * ** *
26979513 TGCACACTCATTTCGTGGGTTGGCTTAGGCATACAAAGTACATTCCACGTCTAAGCCCCAACCGG
196 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCAG
* * * *
26979578 ACCGAGGGTTGTGGCAGCAGGACCAGCAGCGAGATCGGTAGCACACCA-AGGGGGACCAGGCTGA
261 ACCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCAGCAGCAC-GCAGAGGGGGACCAGGCTGA
** * * *
26979642 TCCCC-GACTTGCACATTATGCCTTTTCCGACCAGCCTCTCCGA
325 TCCCCAG-CTTGTGCATTATGCC-TCTCCG--CGGCCT-TTCGA
* *
26979685 TC-AGCTGAGCGCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCC-GAT
1 -CGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAG-T
* * * * * * *
26979748 CTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGAGCAGATCAAGGGTTGCGACAGTAGGATC
63 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATC
* * * * * ** * * **
26979813 GATAGAACGTAGGGGGATCG-GACTGATCCCCGGTTTGTGTATTCTACCTCTCCGGTTGGTTGAG
128 GGTAGCACGCAGGGGGATCGAG-CCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGACTGAG
* * *
26979877 CGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAG
192 CGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAG
* * * **
26979942 TCAGACCGAGGGTTGTGGCAACAGTACCAGCAGCGAGATTGGCAGCACGCAGAGGGGGACCAGGC
257 TCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCAGCAGCACGCAGAGGGGGACCAGGC
** *
26980007 TGATCCCCAGCTTGTATATTAGGCCTCT-C-CGG----TC-A
322 TGATCCCCAGCTTGTGCATTATGCCTCTCCGCGGCCTTTCGA
* *
26980042 -G-CTGAGCGCCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * ** * ***
26980105 AGCATACAGAATTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGGATCAAC
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCGGT
* * * * ** * * * ** * *
26980170 CGCATGCAGGGGGAGATCGGGTCGATCCCTAGTTTGCGCATTCTGCCTCTCCGACCGGCTGAGTG
131 AGCACGCA-GGGG-GATCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGACTGAGCG
* * * * * *
26980235 CCCACACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCAAAGC
194 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGC
26980293 ATACAGACCT
Statistics
Matches: 1330, Mismatches: 281, Indels: 149
0.76 0.16 0.08
Matches are distributed among these distances:
333 3 0.00
334 31 0.02
335 3 0.00
336 4 0.00
337 42 0.03
338 74 0.06
339 1 0.00
340 1 0.00
341 1 0.00
344 3 0.00
345 1 0.00
346 1 0.00
347 1 0.00
348 87 0.07
349 5 0.00
351 1 0.00
354 111 0.08
355 5 0.00
356 90 0.07
357 5 0.00
358 86 0.06
359 3 0.00
360 1 0.00
361 1 0.00
362 4 0.00
363 2 0.00
365 1 0.00
366 83 0.06
367 328 0.25
368 310 0.23
369 4 0.00
370 5 0.00
371 29 0.02
372 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (363 bp):
CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAGGATCGGT
AGCACGCAGGGGGATCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCGACTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCAG
ACCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCAGCAGCACGCAGAGGGGGACCAGGCTGAT
CCCCAGCTTGTGCATTATGCCTCTCCGCGGCCTTTCGA
Found at i:26979057 original size:26 final size:26
Alignment explanation
Indices: 26979020--26979072 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26979010 GTTGACTTAG
26979020 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
26979046 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
26979072 G
1 G
26979073 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:26980119 original size:26 final size:26
Alignment explanation
Indices: 26980080--26980132 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26980070 GTTGACTTAG
* *
26980080 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
*
26980106 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
26980132 G
1 G
26980133 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:26980502 original size:26 final size:26
Alignment explanation
Indices: 26980472--26980524 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26980462 GTTGACTTAG
26980472 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26980498 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26980524 G
1 G
26980525 ATCGAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26982373 original size:367 final size:366
Alignment explanation
Indices: 26981687--26982672 Score: 1055
Period size: 367 Copynumber: 2.7 Consensus size: 366
26981677 GTTTGTTTCG
* * *
26981687 TGGGCTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * **
26981752 GATCAGACCAGATCGAGGGTTAC-A-GTAGTAGGATTGACAGCACGCAGGGGGGACCAGACCGAT
66 GATCGGACCAGATCGAGGGTTACGACG--GTAGGATTGGCAGCACGCAGGGGGGACCAGGTCGAT
* * * *
26981815 CCCCGGCTTGCACATTCTGCCTCTCTGGTCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGGC
129 CCTCGGCTTGCACATTCTACCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGC
* * * * * * * * *
26981880 TTAGGCATACGGAGTACATTCCACATCTAATCCCCAACTGAATCAAGGGTTGTGGTAGCAGGATC
194 TTAGGCATACGGAGTACATTCCAC-TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAAGACC
* * * * * ** *
26981945 GGCACGGGATTGACAGCACGTAGAGAGGGACCGAGTTGATCCTCGGCTTGCGTATTATGCCTCTT
258 GGCACGAGATCGACAACACGCAGAGAGGGACCGAGCTGATCCTCGGCTTGCACATTATGCCTCTC
* ** * ** ** * * * *
26982010 CGATCAAGTTTTTC-GATTGGTTGAGTGCTCGTATGCTCGTTTTA
323 CG-GCAAGCCTCTCTGACCGACTGAGCGCCCATACGCTCGTTTTA
* * * * * *
26982054 TGGGTTGGCTTAAGCATACGGAGTTCATCCCCAGTCTAGGCGTACGAAGTTCATTCCCAGTGTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
26982119 GATCGGACCAGATCGAGGGTTGCGACGGTAGGATTGGTGGCACGCAGGGGGGATCGGGTCGATCC
66 GATCGGACCAGATCGAGGGTTACGACGGTAGGATTGGCAGCACGCAGGGGGGACCAGGTCGATCC
* * * **
26982184 TTGGCTTGCGCATTCTACCTCTCTGGTAGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
131 TCGGCTTGCACATTCTACCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
*
26982249 AGGCATACGGAGTACATTCCACTCTAAGCCCCAGCCGGACCGAGGGTTATGGCAGCAAGACCGGC
196 AGGCATACGGAGTACATTCCACTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAAGACCGGC
* * * * * *
26982314 AGCTAGATCGATAACACGCAGAG-GGCGATCGGGCTGATGCTCGGCTTGCACGTTATGCCTCTCC
261 A-CGAGATCGACAACACGCAGAGAGG-GACCGAGCTGATCCTCGGCTTGCACATTATGCCTCTCC
** *
26982378 GGCCGGCCTCTCTGGCCGACTGAGCGCCCATACGCTCGTTTTA
324 GGCAAGCCTCTCTGACCGACTGAGCGCCCATACGCTCGTTTTA
* * * *
26982421 TGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCAAATGGAGTTCATTCCCTGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
26982486 GATCGGATCGGACCGAGGGTTACGGCAGTAGGATCGGCAGCACGCAAGGGGGACCAGGTCGATCC
66 GATCGGACCAGATCGAGGGTTACGACGGTAGGATTGGCAGCACGCAGGGGGGACCAGGTCGATCC
* ** * * * * *
26982551 TCGGCTTGCACATTCTACCTCCCCAGCCGGTTAAGTGCCCGCACACCCGTTTCGTGGGTTGGCTT
131 TCGGCTTGCACATTCTACCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* * * * *
26982616 AGGCATAGGGAGCT-CATTCCATGTCTAAGCCCTAGTCAGACCGAGGGTTGTGGCAGC
196 AGGCATACGGAG-TACATTCCA-CTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGC
26982673 GGGACCGGTA
Statistics
Matches: 505, Mismatches: 107, Indels: 13
0.81 0.17 0.02
Matches are distributed among these distances:
366 41 0.08
367 431 0.85
368 32 0.06
369 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (366 bp):
TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCGGACCAGATCGAGGGTTACGACGGTAGGATTGGCAGCACGCAGGGGGGACCAGGTCGATCC
TCGGCTTGCACATTCTACCTCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
AGGCATACGGAGTACATTCCACTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAAGACCGGC
ACGAGATCGACAACACGCAGAGAGGGACCGAGCTGATCCTCGGCTTGCACATTATGCCTCTCCGG
CAAGCCTCTCTGACCGACTGAGCGCCCATACGCTCGTTTTA
Found at i:26982820 original size:158 final size:158
Alignment explanation
Indices: 26982668--26982961 Score: 354
Period size: 158 Copynumber: 1.9 Consensus size: 158
26982658 GAGGGTTGTG
* ** * * * *
26982668 GCAGCGGGACCGGTAGCACATAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTTT
1 GCAGCAGGACCGACAGCACACAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATCATACCTCTCT
* * * * * * * *
26982733 GGCCTGCTCAATGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTTATTCCCAGT
66 GGCCGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAAT
26982798 CTAAGATTGGACTGGACTGAGGGTTACA
131 CTAAGATTGGACTGGACTGAGGGTTACA
* * * ** * *
26982826 GTAGCAGGATCGACAGCACGCAGGGGGGATTGGGTCGATCCCCGGCTTGCGCATCCTACCTCTCT
1 GCAGCAGGACCGACAGCACACAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATCATACCTCTCT
* * * *
26982891 GGTCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAAT
66 GGCCGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAAT
26982956 CTAAGA
131 CTAAGA
26982962 ATACGAAGTT
Statistics
Matches: 110, Mismatches: 26, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
158 110 1.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCAGCAGGACCGACAGCACACAGGGGGGACCGAGTCGATCCCCGGCTTGCGCATCATACCTCTCT
GGCCGGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAAT
CTAAGATTGGACTGGACTGAGGGTTACA
Found at i:26982966 original size:26 final size:26
Alignment explanation
Indices: 26982936--26982987 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26982926 TGACTTAGGC
*
26982936 ATACGGAGTTCATCCCCAATCTAAGA
1 ATACGAAGTTCATCCCCAATCTAAGA
* *
26982962 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATCCCCAATCTAAGA
26982988 TTGGACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAATCTAAGA
Found at i:26983098 original size:184 final size:184
Alignment explanation
Indices: 26982778--26983128 Score: 481
Period size: 184 Copynumber: 1.9 Consensus size: 184
26982768 TGACTTATGC
* * * *
26982778 ATACGGAGTTTATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTACAGTAGCAGGATCGACAGC
1 ATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACAGTAGCAAGATCGACAGC
* * * * * *
26982843 ACGCAGGGGGGATTGGGTCGATCCCCGGCTTGCGCATCCTACCTCTCTGGTCGGCTGAGCGCCTG
66 ACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATCCTACCTCTCCGCTCGGCTGAGCGCCCG
*
26982908 CACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGA
131 CACGCTCATTTCATGGGTGGACTTAGGCATACGGAGTTCATCCCCAATCTAAGA
*** *
26982962 ATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGA-TCGAGGGTTGTGGTAGCAAGATCGGCAG
1 ATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACT-GAGGGTTACAGTAGCAAGATCGACAG
* *
26983026 CACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACT-GGCTGAGCGCC
65 CACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATCCTACCTCTCCG-CTCGGCTGAGCGCC
* ** *
26983090 CGCACGCTCGTTTTGTGGGTGGGCTTAGGCATACGGAGT
129 CGCACGCTCATTTCATGGGTGGACTTAGGCATACGGAGT
26983129 ACATTCCACG
Statistics
Matches: 144, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
183 1 0.01
184 142 0.99
185 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (184 bp):
ATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACAGTAGCAAGATCGACAGC
ACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATCCTACCTCTCCGCTCGGCTGAGCGCCCG
CACGCTCATTTCATGGGTGGACTTAGGCATACGGAGTTCATCCCCAATCTAAGA
Found at i:26983516 original size:288 final size:288
Alignment explanation
Indices: 26983017--26983542 Score: 685
Period size: 288 Copynumber: 1.8 Consensus size: 288
26983007 GTGGTAGCAA
** *
26983017 GATCGGCAGCACGCAAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGC
1 GATCGGCAGCACGCAAGGGGGATCGGGCCGATCCCCAACTTGCGCATTCTACCTCTCCGACTGGC
* * *
26983082 TGAGCGCCCGCACGCTCGTTTTGTGGGTGGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCC
66 TGAGCACCCACACACTCGTTTTGTGGGTGGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCC
* * ** * * ** ** *
26983147 CCAGCCAGACCGAAGGTTGTGATAGTAGAACCGGTAGTAGGATCGGCAGCATGCAGAGGGGGATC
131 CCAACCAGACCAAAGGTTGTGATACCAGAACCGATAGCAGGATCAACAGCACACAGAGAGGGATC
* * * * *
26983212 GGGTTGATCCCCAGCTTACGCATTGTGCCCCTCCGGTCGACCTCTCTAGTCGGCTGAACGACCGC
196 GAGCTGATCCCCAGCTTACACATTATGCCCCTCCGGCCGACCTCTCTAGTCGGCTGAACGACCGC
26983277 ACGCTCATTTTGAGGGTTGCGACATCAG
261 ACGCTCATTTTGAGGGTTGCGACATCAG
* * * * * * *
26983305 GATCGGTAGCTCGCAGGGGGGATCGGGTCGATCCCCAACTTGTGCATTCTACCTCTCTG-GTCGG
1 GATCGGCAGCACGCAAGGGGGATCGGGCCGATCCCCAACTTGCGCATTCTACCTCTCCGACT-GG
* * *
26983369 TTGAGCACCCACACACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTACATTCTACGTCTAAGC
65 CTGAGCACCCACACACTCGTTTTGTGGGTGGGCTTAGGCATACGGAGTACATTCCACGTCTAAGC
* * * * *
26983434 CCCAACCGGACCAAATGTTGTGGTACCAGGACCGATAGCGGGATCAACAGCACACAGAGAGGGAT
130 CCCAACCAGACCAAAGGTTGTGATACCAGAACCGATAGCAGGATCAACAGCACACAGAGAGGGAT
* *
26983499 CGAGCTGATCCCCAGCTTGCACATTATGCCTCTCCGGCCGACCT
195 CGAGCTGATCCCCAGCTTACACATTATGCCCCTCCGGCCGACCT
26983543 TTCCGACCTG
Statistics
Matches: 198, Mismatches: 39, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
287 1 0.01
288 197 0.99
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (288 bp):
GATCGGCAGCACGCAAGGGGGATCGGGCCGATCCCCAACTTGCGCATTCTACCTCTCCGACTGGC
TGAGCACCCACACACTCGTTTTGTGGGTGGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCC
CCAACCAGACCAAAGGTTGTGATACCAGAACCGATAGCAGGATCAACAGCACACAGAGAGGGATC
GAGCTGATCCCCAGCTTACACATTATGCCCCTCCGGCCGACCTCTCTAGTCGGCTGAACGACCGC
ACGCTCATTTTGAGGGTTGCGACATCAG
Found at i:26983620 original size:26 final size:26
Alignment explanation
Indices: 26983590--26983642 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26983580 GTTGACTTAG
*
26983590 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26983616 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26983642 G
1 G
26983643 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26984001 original size:159 final size:159
Alignment explanation
Indices: 26983616--26984011 Score: 442
Period size: 159 Copynumber: 2.5 Consensus size: 159
26983606 CCCTGTCTAA
* * * *
26983616 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * *
26983681 GCACGCAGA-GGGGATCGAGCCGATCCTCAGCTTGTGCATTCTACCTCTCCGGCAGGCTGAGCGC
66 GCACACAGAGGGGGATCGAGCCGATCCTCAACTTGTGCATTATACCTCTCCGGCAGGCTCAGCAC
* * *
26983745 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
131 CCGCACGCCCATTTCATGGGTTGACTTAG
* * * * ** * * * * * *
26983774 GCGTAGGGAGCTCATT-CCATGTCTAAG-CCCCAGTCGGACCGAGGTTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGTAGCAGGATCGA
* * * *
26983837 CAGCACACAGAGGGGGATCGAGTCGATCC-CTAACTTGTGCATTATGCCTCTTCGGCTGGCTCAG
64 CAGCACACAGAGGGGGATCGAGCCGATCCTC-AACTTGTGCATTATACCTCTCCGGCAGGCTCAG
* *
26983901 CACCCGCACGCTCATTTCATGGGTTGACTTAT
128 CACCCGCACGCCCATTTCATGGGTTGACTTAG
* *
26983933 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
26983998 GCACACAG-GGGGGA
66 GCACACAGAGGGGGA
26984012 CCAGGTCGAT
Statistics
Matches: 188, Mismatches: 44, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
157 4 0.02
158 58 0.31
159 121 0.64
160 5 0.03
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACACAGAGGGGGATCGAGCCGATCCTCAACTTGTGCATTATACCTCTCCGGCAGGCTCAGCAC
CCGCACGCCCATTTCATGGGTTGACTTAG
Found at i:26984076 original size:158 final size:158
Alignment explanation
Indices: 26983616--26984105 Score: 493
Period size: 158 Copynumber: 3.1 Consensus size: 158
26983606 CCCTGTCTAA
* * * *
26983616 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * *
26983681 GCACGCAGAGGGGATCGAGCCGATCCTCAGCTTGTGCATTCTACCTCTCCGGCAGGCTGAGCGCC
66 GCACACAGGGGGGATCGAGTCGATCCTTAGCTTGTGCATTCTACCTCTCTGGCTGGCTGAGCACC
* *
26983746 CGCACGCCCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * ** * * * * * *
26983774 GCGTAGGGAGCTCATT-CCATGTCTAAG-CCCCAGTCGGACCGAGGTTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGTAGCAGGATCGA
* * * * *
26983837 CAGCACACAGAGGGGGATCGAGTCGATCCCTAACTTGTGCATTATGCCTCT-TCGGCTGGCTCAG
64 CAGCACACAG-GGGGGATCGAGTCGATCCTTAGCTTGTGCATTCTACCTCTCT-GGCTGGCTGAG
* * *
26983901 CACCCGCACGCTCATTTCATGGGTTGACTTAT
127 CACCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
26983933 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * **
26983998 GCACACAGGGGGGA-CCAGGTCGATCCTTGGCTTGTGTATTCTACCTCTCTGGCTGGTTGAGTTC
66 GCACACAGGGGGGATCGA-GTCGATCCTTAGCTTGTGCATTCTACCTCTCTGGCTGGCTGAGCAC
* * * *
26984062 TCGAATGCTCATTTCGTGGGTCGGCTTAG
130 CCGCACGCTCATTTCGTGGGTTGGCTTAG
*
26984091 GCATACAGAGTTCAT
1 GCATACGGAGTTCAT
26984106 ACCATGTCTA
Statistics
Matches: 258, Mismatches: 66, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 6 0.02
158 126 0.49
159 121 0.47
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACACAGGGGGGATCGAGTCGATCCTTAGCTTGTGCATTCTACCTCTCTGGCTGGCTGAGCACC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:26984383 original size:26 final size:26
Alignment explanation
Indices: 26984343--26984395 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
26984333 GTTGGCTTAG
*
26984343 GCATACGGAGTTCATT-CCATATCTAA
1 GCATACGGAGCTCATTCCCA-ATCTAA
26984369 GCATACGGAGCTCATTCCCAATCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
26984395 G
1 G
26984396 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAATCTAA
Found at i:26984485 original size:11 final size:11
Alignment explanation
Indices: 26984465--26984497 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
26984455 CCTGAGGCAC
26984465 CATCGTCGGAG
1 CATCGTCGGAG
*
26984476 CATCGCCGGAG
1 CATCGTCGGAG
26984487 CATCGTCGGAG
1 CATCGTCGGAG
26984498 AGCCTAATCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.15
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:26985125 original size:26 final size:26
Alignment explanation
Indices: 26985077--26985129 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26985067 GTTGACTTAG
* *
26985077 GCATATAGAGTTCATCCGTAGTCTAA
1 GCATACAGAGTTCATCCGCAGTCTAA
26985103 GCATACAGAGTTCATTCC-CAGTCTAA
1 GCATACAGAGTTCA-TCCGCAGTCTAA
26985129 G
1 G
26985130 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCGCAGTCTAA
Found at i:26985472 original size:25 final size:26
Alignment explanation
Indices: 26985443--26985494 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
26985433 GTTGACTTAG
26985443 GCATACGAAGTTCATCCT-AATCTAA
1 GCATACGAAGTTCATCCTCAATCTAA
* *
26985468 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGAAGTTCATCCTCAATCTAA
26985494 G
1 G
26985495 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATCCTCAATCTAA
Found at i:26985717 original size:368 final size:363
Alignment explanation
Indices: 26985036--26986040 Score: 1205
Period size: 368 Copynumber: 2.7 Consensus size: 363
26985026 GCCTTTCTGG
* * * * *
26985036 TCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCGTAGTCT
1 TCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGA-AGTTCATCC-TAATCT
* *
26985101 AAGCATACAGAGTTCATTCCCAGTCTAAGATTGAACCGGATCGAGGGTTACAGCAGCAGG-ATCG
64 AAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCAGCAGCAGGAAT-G
* * * * * *
26985165 ATAGCACGTAGGGGGGATCGAGCCGATCCTCGGCTTGCGTATTCTGCCTCTTCGACCGGCTATGC
128 ATAGCACGTAGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTACGC
*
26985230 CCGCACGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTACATTCCACT-TCTAAGCCCCAGTC
193 CCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTACATTCCA-TGTCTAAGCCCCAGTC
* * * * * * * *
26985294 GAACCGAGGGTTGTGATAGCAGGACCGGCAGCGGGATCGACAGCACGCAGAGGGGGATCGAGCTG
257 GGATCAAGGTTTGTGACAGCAGGACCGGCAGCGGGATCAACAGCACACAGAGGGGGACCGAGCTG
26985359 ATCCCTGA-CTTGCGCATTATGCCTCTCCGATCGGCCT-TTCCAA
322 ATCCC-GAGCTTGCGCATTATGCCTCTCCGATC-GCCTCTT-CAA
* *
26985402 TCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCTAATCTA
1 TCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GAAGTTCATCCTAATCTA
* * * * * *
26985467 AGCATACGGAGTTCATTCTCAATCTAAGATCGAACCGGATCGAGGGTTTGTAACAGCAGGAATGG
65 AGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGG-TTGCAGCAGCAGGAATGA
* * * **
26985532 TAGCACGTAGAGGGGACCGGGTCGATCCTCGGCTTGCGCATTCTGCCTCCCCAATTGGCTGAGCG
129 TAGCACGTAGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCT-A-CG
* * *
26985597 CCCGCACACTCATTTTGTGGGTTGGCTTAGGCATACGGAGTACATTTCATGTCTAAGCCCCAGTC
192 CCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTC
* * *
26985662 GGATCAAGGTTTGT-AGCAGCAGGACCGGCAGCGGGATCAATAGCACACGGAGGGGGACCGGGCT
257 GGATCAAGGTTTGTGA-CAGCAGGACCGGCAGCGGGATCAACAGCACACAGAGGGGGACCGAGCT
* * *
26985726 GATCTCGAGCTTGCGCATTATGCCTCTCCGGTCGCCTCTTCGA
321 GATCCCGAGCTTGCGCATTATGCCTCTCCGATCGCCTCTTCAA
* * * * *
26985769 CCGGTTGAGCGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAATCT
1 TCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GAAGTTCAT-CCTAATCT
* *
26985834 AAGCATACAGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGCAGCAGCAGGATTG
64 AAGCATACAGAGTTCATTCCCAGTCTAAGATCGA-ACCGGATCGAGGGTTGCAGCAGCAGGAATG
** ** * * * * *
26985898 ACCGCACACAGAGGGGACCAGGCCAATCCTTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTAACC
128 ATAGCACGTAGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCT-A-C
* * *
26985963 GCCAGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAG
191 GCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAG
* *
26986027 CCAGATCGAAGGTT
255 TCGGATC-AAGGTT
26986041 ATGGCAGCTG
Statistics
Matches: 542, Mismatches: 84, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
365 48 0.09
366 111 0.20
367 187 0.35
368 196 0.36
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (363 bp):
TCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGAAGTTCATCCTAATCTAA
GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCAGCAGCAGGAATGATA
GCACGTAGAGGGGACCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTACGCCCG
CACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGAT
CAAGGTTTGTGACAGCAGGACCGGCAGCGGGATCAACAGCACACAGAGGGGGACCGAGCTGATCC
CGAGCTTGCGCATTATGCCTCTCCGATCGCCTCTTCAA
Found at i:26986363 original size:26 final size:26
Alignment explanation
Indices: 26986311--26986363 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26986301 GTTGGCTTAG
* * *
26986311 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGCTCATTCCATATCTAA
26986337 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
26986363 G
1 G
26986364 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:26987448 original size:26 final size:26
Alignment explanation
Indices: 26987412--26987464 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26987402 GTTGACTTAG
26987412 GCATACGGAGTTCATCCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
* * *
26987438 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
26987464 G
1 G
26987465 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:26987813 original size:158 final size:158
Alignment explanation
Indices: 26987438--26987929 Score: 501
Period size: 158 Copynumber: 3.1 Consensus size: 158
26987428 CCCAGTATAA
* * *
26987438 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGTAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGTAGGATCGACA
* * * *
26987503 GCACGCA-AGGGGGACCCGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGCGGAGCGC
66 GCACGCAGAGGGGGACCAGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGC
*
26987567 CTGCACG-TCTGTTTCGTGGTTGGCTTAG
131 CCGCACGCTC-GTTTCGTGGTTGGCTTAG
* ** * ** * * **
26987595 GCATAGGGAACTCATT-CCATGTCTAAG-CCCCAGCCGGA-TCGAGGGTTGTGGCAGCGGGATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACT-GAGGGTTGCGGTAGTAGGATCG
* * * * * * * * *
26987657 ACAGCACGTAGAAGGAGATCGGGTCGATCCCC-AGCTTACGCATTATGCCTCTTCGACCGGCTCA
63 ACAGCACGCAGAGGGGGACCAGGTCGATCCCCGA-CTTACGCATTCTGCCTCTCCGATCGGCTGA
* * *
26987721 GTGCCCGCACGCTCGTTTCATGGTTGGCTTAT
127 GCGCCCGCACGCTCGTTTCGTGGTTGGCTTAG
* * **
26987753 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACAATAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGTAGGATCGACA
* * * * * * * *
26987818 GCACGCAGGGGGGGACCAGATCAATCCCCGCCTTGCACATTCTGCCTCTCCGATTGGCTGAACGC
66 GCACGCAGAGGGGGACCAGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGC
*
26987883 CCGTACGCTCGTTTCGTGGGTTGGCTTAG
131 CCGCACGCTCGTTTCGT-GGTTGGCTTAG
26987912 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
26987930 ATGTGTAAGC
Statistics
Matches: 261, Mismatches: 63, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
156 5 0.02
157 52 0.20
158 169 0.65
159 35 0.13
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGTAGGATCGACA
GCACGCAGAGGGGGACCAGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGTTGGCTTAG
Found at i:26987964 original size:26 final size:26
Alignment explanation
Indices: 26987912--26987964 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26987902 GTTGGCTTAG
* * *
26987912 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGCTCATTCCATATCTAA
26987938 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
26987964 G
1 G
26987965 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:26988674 original size:26 final size:26
Alignment explanation
Indices: 26988644--26988696 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26988634 GTTGACTTAG
26988644 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
26988670 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26988696 G
1 G
26988697 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26988879 original size:26 final size:26
Alignment explanation
Indices: 26988828--26988880 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
26988818 GTTGGCTTAG
* * *
26988828 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGCTCATTCCAAGTCTAA
26988854 GCATACGAAGCTCATTCCCAAG-CTAA
1 GCATACGAAGCTCATT-CCAAGTCTAA
26988880 G
1 G
26988881 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCAAGTCTAA
Found at i:26988962 original size:11 final size:11
Alignment explanation
Indices: 26988948--26989000 Score: 74
Period size: 11 Copynumber: 5.0 Consensus size: 11
26988938 ATCGAGGCAC
26988948 CATCGCCGGAG
1 CATCGCCGGAG
26988959 CATCG--GGAG
1 CATCGCCGGAG
*
26988968 CATCGTCGGAG
1 CATCGCCGGAG
*
26988979 CATCGTCGGAG
1 CATCGCCGGAG
26988990 CATCGCCGGAG
1 CATCGCCGGAG
26989001 AGCCTAACCA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
9 9 0.23
11 30 0.77
ACGTcount: A:0.19, C:0.30, G:0.38, T:0.13
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:26988977 original size:20 final size:21
Alignment explanation
Indices: 26988948--26989000 Score: 81
Period size: 20 Copynumber: 2.5 Consensus size: 21
26988938 ATCGAGGCAC
26988948 CATCGCCGGAGCATCG-GGAG
1 CATCGCCGGAGCATCGCGGAG
*
26988968 CATCGTCGGAGCATCGTCGGAG
1 CATCGCCGGAGCATCG-CGGAG
26988990 CATCGCCGGAG
1 CATCGCCGGAG
26989001 AGCCTAACCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 15 0.52
22 14 0.48
ACGTcount: A:0.19, C:0.30, G:0.38, T:0.13
Consensus pattern (21 bp):
CATCGCCGGAGCATCGCGGAG
Found at i:26990234 original size:355 final size:351
Alignment explanation
Indices: 26989506--26990535 Score: 1082
Period size: 355 Copynumber: 2.9 Consensus size: 351
26989496 CCACCTGTTC
* * * *
26989506 GATCCCCGGCTTCAGCATCT-TGCCTCTCTAGTCTGCTGAGCGCCCGC-CGCTCATTTCATGGGT
1 GATCCCCGGCTTC-GCAT-TATGCCTCTCCAGCCGGCTGAGCGCCC-CACGCTCGTTTCATGGGT
* * * * * * *
26989569 TGACCTAGGCATACGGAGCTCATCCCCAGCCTAAGCATATGGAGTTCATTCCCTGTCTATGATTG
63 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA-CGAGTTCATTCCCAGTCTAAGATCG
* * * * * * *
26989634 GATCAGATCGAGGGTTGCAACAGCAGGATCGGTAGCATGCAGGAGGGATCGGGTCGATCCCCGGC
127 GATCGGATCGAGGGTTACGATAGCAGGATCGATAGCACGCAGGGGGGATCGGGTCGATCCCCGGC
* * * * * *
26989699 TTGCGTATTCTACCTCTCCGATCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCGTAGGCA
192 TTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCT-GTTTCGTGGGTTGGCTTAGGCA
* * *** ** * * * *
26989764 TACGGAGTACATCCCATGTCTAAGCCCCAGTCAAATTGAGGGTTGTGGTAGCAAGACCGGTAACG
256 TACGGAGTACATTCCATGTTTAAGCCCCAGTTGGACCGAGGGTTGTGGGAACAAGACCGGCAACA
*
26989829 GGATCAGCAGCACGCAGAGGGGGATCGGGCT
321 GGATCAGCAGCACACAGAGGGGGATCGGGCT
* * * *
26989860 GATCCTCGGCTTACGCATTATGCCTCTCCAGCCGGCTGAGCACCCATACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTT-CGCATTATGCCTCTCCAGCCGGCTGAGCGCCC-CACGCTCGTTTCATGGGTT
*
26989925 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCGTACAGAGTTCATTCCCAGTCTAAGATCGG
64 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGG
* * * *
26989990 ATCGGATCGAGGGTTACGGTAGTAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAGCT
128 ATCGGATCGAGGGTTACGATAGCAGGATCGATAGCACGCAGGGGGGATCGGGTCGATCCCCGGCT
* * *
26990055 TACGCATTCTGCCTCTCCGACCGGTTGAGTGCCCGCACGCTAGTTTCGTGGGTTGGCTTAGGCAT
193 TGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCT-GTTTCGTGGGTTGGCTTAGGCAT
* * * * * *
26990120 ACAGAGTACATTCCACGTTTAAGCCCCAGTTGGACCAAGGGTTGTGGGAACAGGACTGGCAGCAG
257 ACGGAGTACATTCCATGTTTAAGCCCCAGTTGGACCGAGGGTTGTGGGAACAAGACCGGCAACAG
* * *
26990185 GATCGGTAGCACACAGAGGGGGATCGGGTT
322 GATCAGCAGCACACAGAGGGGGATCGGGCT
* *
26990215 GATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCCTCTTCGACCAGCTGAGCGCCCGCATGCT
1 GATCCCCGGCTT-CGCATTATGCCTC-T---CCAG---C--CG----GCTGAGCGCCC-CACGCT
26990280 CGTTTCATGGGTTGACTTAGGCATACGGA-TATCATCCCCAGTCTAAGCATACGAAGTTCATTCC
51 CGTTTCATGGGTTGACTTAGGCATACGGAGT-TCATCCCCAGTCTAAGCATACG-AGTTCATTCC
* * * * * *
26990344 CAGTCTAAGATTGGGATCGGATCGAGGGTTTCGCTAGCAGGATCGATAGCACGTAGGGAGGACCG
114 CAGTCTAAGA-TCGGATCGGATCGAGGGTTACGATAGCAGGATCGATAGCACGCAGGGGGGATCG
* * * * * *
26990409 AGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGATTGAGGGCCTGCACGCCTGTTTTGTG
178 GGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACG-CTGTTTCGTG
* *
26990474 GGTTGG-TGTAGGCATAGGGAGCT-CATTCCATGTCTT-AGCCCCAGCTGGACCGAGGGTTGTGG
242 GGTTGGCT-TAGGCATACGGAG-TACATTCCATGT-TTAAGCCCCAGTTGGACCGAGGGTTGTGG
26990536 TAGCGAAACT
Statistics
Matches: 562, Mismatches: 90, Indels: 33
0.82 0.13 0.05
Matches are distributed among these distances:
353 1 0.00
354 36 0.06
355 279 0.50
356 1 0.00
359 3 0.01
362 1 0.00
364 2 0.00
367 2 0.00
368 83 0.15
369 149 0.27
370 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (351 bp):
GATCCCCGGCTTCGCATTATGCCTCTCCAGCCGGCTGAGCGCCCCACGCTCGTTTCATGGGTTGA
CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGATC
GGATCGAGGGTTACGATAGCAGGATCGATAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGC
GCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCACGCTGTTTCGTGGGTTGGCTTAGGCATACGG
AGTACATTCCATGTTTAAGCCCCAGTTGGACCGAGGGTTGTGGGAACAAGACCGGCAACAGGATC
AGCAGCACACAGAGGGGGATCGGGCT
Found at i:26990254 original size:13 final size:13
Alignment explanation
Indices: 26990236--26990260 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26990226 TGCGCATTAT
26990236 GCCTCTTCGACCG
1 GCCTCTTCGACCG
26990249 GCCTCTTCGACC
1 GCCTCTTCGACC
26990261 AGCTGAGCGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.48, G:0.20, T:0.24
Consensus pattern (13 bp):
GCCTCTTCGACCG
Found at i:26992569 original size:26 final size:26
Alignment explanation
Indices: 26992533--26992585 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26992523 GTTGACTTAG
26992533 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
*
26992559 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
26992585 G
1 G
26992586 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:26993426 original size:356 final size:350
Alignment explanation
Indices: 26992515--26993456 Score: 1018
Period size: 356 Copynumber: 2.6 Consensus size: 350
26992505 CGCGTGCTTG
26992515 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATACCCAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
26992580 TCTAAGATCAGACCAGATCGAGGGTTGCAGTAGCAAGATC-AGCAACATACATGAGGGATCGGGC
65 TCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGA-CAACAT-CAGGGGGGATCGGGC
* * * *
26992644 CGATCCTCGGCTTACGCATTCTGCCTCTTCGATCGACTGAGCACCCGCACGCTCGTTTCGTGGGT
128 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGT-GGT
* *** *
26992709 TGGCTTAGGCATACGGAGTACATTCCACGTCTAAGTCCCAGCGGGACCGAGGGTTGTGGCAGTAG
192 TGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCGGGA-CGAGGACCGT-G-AGCAG
* ** * *
26992774 GGCCGACAGCACGTAGAGGGGGACCGGGCTGATCCCCGACTTACACAATATGCCTCTCCAGCCGG
254 GACCGACAGCACGTAGAGGGGGACCAAGCTGATCCCAGACTTACACAATATGCCCCTCCAGCCGG
*
26992839 CCTCTTCGACTGACTGAGCACCCACACACTCA
319 CCTCTCCGACTGACTGAGCACCCACACACTCA
* * * *
26992871 TTTCGTGGGCTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCAAACGGAGTTCATTCCTAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
26992936 TCTAAGATCAGACCGGATCAAGGGTTACGATAGTAGGATCGACAGCACAT-AGGGGGGATCGGGC
65 TCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACA--ACATCAGGGGGGATCGGGC
* * * * *
26993000 CGATCTCCGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCCACACGCTCGTTCCGTGGAT
128 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGG-T
* *
26993065 TGGCTTAGGCATACGTAGTATATTCCACGTCTCAA-CCCCAGTCGTGGTA-GTAGGACCGAT-AG
192 TGGCTTAGGCATACGGAGTACATTCCACGTCT-AAGCCCCAG-CG-GG-ACG-AGGACCG-TGAG
* ** * * *** *
26993127 CAGGATCGGTAGCATGTAGAGGGGGACCAAGCTGATACTCAG-CTTGTGCATTATGCCCCTCC-G
251 CAGGACCGACAGCACGTAGAGGGGGACCAAGCTGAT-CCCAGACTTACACAATATGCCCCTCCAG
* ** * *
26993190 ACCGGCCTCTCCGA-TCGATTGAGTGCCCGCACGCTCA
315 -CCGGCCTCTCCGACT-GACTGAGCACCCACACACTCA
* *
26993227 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATATGAAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC-AGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
26993292 TCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAACATGCAGGGGGGACCAGGTC
65 TCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAACAT-CAGGGGGGATCGGGCC
* * * ** * * * *
26993357 GATCCCCAGCTTGCGCATTTTGTCTCTCCGATCGACTGATTGCTCGCACGCCCATTTTGTGAGTT
129 GATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTG-GTT
* * *
26993422 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
193 GGCTTAGGCATACGGAGTACATTCCACGTCTAAGC
26993457 ATACGGAGCC
Statistics
Matches: 485, Mismatches: 83, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
354 4 0.01
355 9 0.02
356 450 0.93
357 10 0.02
358 10 0.02
359 2 0.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (350 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAACATCAGGGGGGATCGGGCCGA
TCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGTTGGC
TTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCGGGACGAGGACCGTGAGCAGGACCGAC
AGCACGTAGAGGGGGACCAAGCTGATCCCAGACTTACACAATATGCCCCTCCAGCCGGCCTCTCC
GACTGACTGAGCACCCACACACTCA
Found at i:26993992 original size:26 final size:26
Alignment explanation
Indices: 26993962--26994014 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26993952 GTTGGCTTAG
* *
26993962 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGAAGCTCATTCTCA-GTCTAA
26993988 GCATACGAAGCTCATTCTCAGTCTAA
1 GCATACGAAGCTCATTCTCAGTCTAA
26994014 G
1 G
26994015 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGCTCATTCTCAGTCTAA
Found at i:26994721 original size:26 final size:26
Alignment explanation
Indices: 26994685--26994737 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
26994675 GTTGACTTAG
*
26994685 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26994711 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26994737 G
1 G
26994738 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26994909 original size:26 final size:26
Alignment explanation
Indices: 26994871--26994921 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
26994861 TGGCTTAGGT
*
26994871 ATACGGAGTTCATT-CCATGTCTAAGC
1 ATACGGAGCTCATTCCCA-GTCTAAGC
26994897 ATACGGAGCTCATTCCCAGTCTAAG
1 ATACGGAGCTCATTCCCAGTCTAAG
26994922 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGCTCATTCCCAGTCTAAGC
Found at i:26995629 original size:26 final size:26
Alignment explanation
Indices: 26995593--26995642 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
26995583 TGACTTAGGT
*
26995593 ATACGGAGTTCA-TCCCAAGTCTAACC
1 ATACAGAGTTCATTCCC-AGTCTAACC
26995619 ATACAGAGTTCATTCCCAGTCTAA
1 ATACAGAGTTCATTCCCAGTCTAA
26995643 GATTGGACCG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAACC
Found at i:26995642 original size:906 final size:905
Alignment explanation
Indices: 26993804--26995801 Score: 2929
Period size: 906 Copynumber: 2.2 Consensus size: 905
26993794 TTGACTTATG
* * * * *
26993804 CATACTGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCAGGATCGATAG
1 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATAG
* * * * * * * * *
26993869 CACATAGGGGGGCACCGAGTCGATCCCTGGCTTACGCATTCTTCCTCTCCGATCGGCTGAGCGCC
66 CAC-CAGGGGGG-ATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGCGCC
* *
26993934 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGC
129 CACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGC
* * * *
26993999 TCATTCTCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGGGCTTGGGAATGTGTTGGTGGCAC
194 TCATTCCCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGGGCTCGAGAATGTGCTGGTGGCAC
* **
26994064 ATTTTTTTTGCCCAGGGCACCATCGCCGGAGCATCATCGGAGAGCCTAACCGGAGGCATTGGGGA
259 ATTTTTTTGGCCCAGGGCACCATCGCCGGAGCATCATCAAAGAGCCTAACCGGAGGCATTGGGGA
* **
26994129 TTCCAGCGATTGGGGGGGCCATGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTG
324 TTCCAGCGATTGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
** * * *
26994194 CTTATATTGGGCCCCTATCCCTCATCAAATCTCGATAACTCACACCCCCTTAAAGAGCATTTGAG
389 CTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAG
* *
26994259 ATTTTATACGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATGGGGACACTTTTTTCAAACTGT
454 ATTTTATACGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAACGGT
*
26994324 CACAAAATCCTCTCCACTTTGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAG
519 CACAAAATCCTCTCCACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAG
* * * **
26994389 GATCACCTTTACCAATTTTGGGGACAAAACTCTTTCTAAAAAATTTAAAAAAATCCCAAACCGTA
584 GACCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAATTTAAAAAAATCCCAAACCCCA
26994454 AAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCGTCTTGCCACAAAACTTCACATGAAGGC
649 AAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCGTCTTGCCACAAAACTTCACATGAAGGC
*
26994519 TTAGGGGACCATTGTATCAAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAG
714 TTAGCGGACCATTGTATC-AATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAG
* * * *
26994584 ATGTGCTTGAACCCACCTACCACCTATTCGATCACCGGCTTGCGCATCTTGCCTCTCTGATCGGC
778 ATGTGCTTGAACCCACCTACCACCCATTCGATCACCAGCTTACGCATCCTGCCTCTCTGATCGGC
* * *
26994649 TGAGCGCCCGCACGCATGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAG
843 TGAGCGCCCGCACGCATGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAC
* * * * * * *
26994712 CATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCAACAGCCGGATTGGTAG
1 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATAG
* * * *
26994777 CACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCCGACTGAGGGCCC
66 CAC-CAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGCGCCC
* * *
26994842 ACACGCTCATTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCATACGGAGCT
130 ACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGCT
* *
26994907 CATTCCCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGGGCTCGAGCATGTGCTGGT-GCTGC
195 CATTCCCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGGGCTCGAGAATGTGCTGGTGGC-AC
* *
26994971 ATTTTTTTGGCCCAGGGCACCATCGTCGGAGCATCGTCAAAGAGCCTAACCGGACGGCATTGGGG
259 ATTTTTTTGGCCCAGGGCACCATCGCCGGAGCATCATCAAAGAGCCTAACCGGA-GGCATTGGGG
* * *
26995036 GTTTC-GACGATT-GGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
323 ATTCCAG-CGATTGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
26995098 CCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTC
387 CCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTC
* *
26995162 AGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACGTTTTTT-AAAC
452 AGATTTTATACGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACAC-TTTTTTCAAAC
* * *
26995226 GGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAAAAAAAAATA
516 GGTCACAAAATCCTCTCCACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCC-AAAAAAAATA
* * *
26995291 CAAGGACCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAATTTTTAAAAAATCTCGAA
580 CAAGGACCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAA-TTTAAAAAAATCCCAAA
* * *
26995356 CCCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATG
644 CCCCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCGTCTTGCCACAAAACTTCACATG
*
26995421 AAGGCTTAGCGGACCATTGTATGC-ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
709 AAGGCTTAGCGGACCATTGTAT-CAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATA
* * *
26995485 TGAAGCTGTGCTTGAACCCACCTACCACCCGTTCGATC-CTCAGCTTATGCATCCTGCCTCTCTG
773 TGAAGATGTGCTTGAACCCACCTACCACCCATTCGATCAC-CAGCTTACGCATCCTGCCTCTCTG
* * *
26995549 GTCGGCTGAGTGCCCGCACGC-TCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATCCCAAGT
837 ATCGGCTGAGCGCCCGCACGCAT-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGT
26995613 CTAAC
901 CTAAC
** * * *
26995618 CATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGACAGTAGGATCGACAG
1 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATAG
*
26995683 CACCAGGGGGGATCGGGCCGATCTCTGGCTTGCGCATTCTGCCTCT-TCGGTCGACTGAGCGCCC
66 CACCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCT-GGTCGACTGAGCGCCC
* * *
26995747 ACACGC-CTGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATATCTAAGC
130 ACACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
26995802 CCCAGCCGGA
Statistics
Matches: 971, Mismatches: 108, Indels: 25
0.88 0.10 0.02
Matches are distributed among these distances:
904 2 0.00
905 224 0.23
906 355 0.37
907 307 0.32
908 83 0.09
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (905 bp):
CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGATAG
CACCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGTCGACTGAGCGCCCA
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGCTC
ATTCCCAGTCTAAGATTTTGAGCCATGGTGCACATGCTGGGCTCGAGAATGTGCTGGTGGCACAT
TTTTTTGGCCCAGGGCACCATCGCCGGAGCATCATCAAAGAGCCTAACCGGAGGCATTGGGGATT
CCAGCGATTGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGAT
TTTATACGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAACGGTCA
CAAAATCCTCTCCACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
CCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAATTTAAAAAAATCCCAAACCCCAAA
AAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCGTCTTGCCACAAAACTTCACATGAAGGCTT
AGCGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATG
TGCTTGAACCCACCTACCACCCATTCGATCACCAGCTTACGCATCCTGCCTCTCTGATCGGCTGA
GCGCCCGCACGCATGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAC
Found at i:26995917 original size:158 final size:157
Alignment explanation
Indices: 26995649--26996117 Score: 442
Period size: 158 Copynumber: 3.0 Consensus size: 157
26995639 CTAAGATTGG
* * * * * * * * * *
26995649 ACCGGACCGAGGGTTACGACAGTAGGATCGACAGCAC-CAGGGGGGATCGGGCCGATCTCTGGCT
1 ACCGAACCAAGGGTTGCAACAGCAGGACCGACAGCACACAGGGGGGATCAGGTCGATCCCCGGCT
** * * *
26995713 TGCGCATTCTGCCTCTTCGGTCGACTGAGCGCCCACACGC-CTGTTTCGTGGGTTGGCTTAGGCA
66 TGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCA
* * *
26995777 TAGGGAGCTCATTCCATATCTAAGCCCCA
130 TACGGAGTTCATTCCA-GTCTAAGCCCCA
* * * *** * ** * * *
26995806 GCCGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCACACAGAGGTGGA-CTGGGT-GATCCCCGT
1 ACCGAACCAAGGGTTGCAACAGCAGGACCGACAGCACACAG-GGGGGATC-AGGTCGATCCCCGG
* * * * *
26995869 CTTGCGCATTATGCCTCTTCGACCGGTTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTATGC
64 CTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
** *
26995934 ATACGGAGTTCATTCCCAGTCTAAGATCGA
129 ATACGGAGTTCATT-CCAGTCTAAGCCCCA
* * ** *
26995964 ACCGAACCAAGGGTTGCAATAGCAGGATCGACAGCACGTAGGGGGGATCAGGTCGATCCTCGGCT
1 ACCGAACCAAGGGTTGCAACAGCAGGACCGACAGCACACAGGGGGGATCAGGTCGATCCCCGGCT
* * *
26996029 TGCTCATTCTGCCACTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
66 TGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
26996094 ACGGAGTTCATTCCACGTCTAAGC
131 ACGGAGTTCATTCCA-GTCTAAGC
26996118 ATACGGAGCT
Statistics
Matches: 248, Mismatches: 56, Indels: 15
0.78 0.18 0.05
Matches are distributed among these distances:
157 39 0.16
158 197 0.79
159 12 0.05
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (157 bp):
ACCGAACCAAGGGTTGCAACAGCAGGACCGACAGCACACAGGGGGGATCAGGTCGATCCCCGGCT
TGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
ACGGAGTTCATTCCAGTCTAAGCCCCA
Found at i:26997220 original size:26 final size:26
Alignment explanation
Indices: 26997190--26997239 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
26997180 GACTTACGCG
26997190 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
*
26997216 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
26997240 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:26997686 original size:162 final size:157
Alignment explanation
Indices: 26997261--26997706 Score: 459
Period size: 162 Copynumber: 2.8 Consensus size: 157
26997251 CCGAGGGTTA
* * * * *
26997261 CGACAGCACGCAGGGGAGA-TCGGGCCGATTCCCGACTTACGCATTCTGCCTCTCCGGCCGACTG
1 CGACAGCACGCAGGGGGGACT-GGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCGGTC-G
* * * * *
26997325 AGCGGCCGCACGCCAGTTTCATGGGTTGGCTTAGGCATAAGGAGCTCATTCCATGTCTAAGCCCC
64 AGCGCCCGCACGCTAGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACC
* * **
26997390 AGTCAGATCGAGGGTTGTGGTAGCAGGAC
129 AGTCAGACCGAGGGTTGAGACAGCAGGAC
** * * * * * *
26997419 CGGTAGCACGCAGAGGGGGACCGGGCCGATCCCTGGATTACGCATTGTGCCTCTTCAGCCGGCTC
1 CGACAGCACGCAG-GGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCCTC-TCCGGCGG-TC
* * ** *
26997484 -AGCGCCCGCACGCTCGTTTCGTGGGTTTACTTATGCATACGGAGTTCATTCCCA-GTCTAAGAT
63 GAGCGCCCGCACGCTAGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG--
* *
26997547 CAGATCAGATCAGACCGAGGGTTGAGACAGCAGGAT
125 C--ACCAG-TCAGACCGAGGGTTGAGACAGCAGGAC
* *
26997583 CGACAGCACGC-GGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGTCGA
1 CGACAGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGG-CGGTCGA
* *
26997647 GCGCCCGTACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
65 GCGCCCGCACGCTAGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
26997707 GATACGGAGT
Statistics
Matches: 230, Mismatches: 45, Indels: 22
0.77 0.15 0.07
Matches are distributed among these distances:
158 11 0.05
159 79 0.34
160 8 0.03
161 10 0.04
162 87 0.38
163 4 0.02
164 31 0.13
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
CGACAGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGCGGTCGAG
CGCCCGCACGCTAGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAG
TCAGACCGAGGGTTGAGACAGCAGGAC
Found at i:26997712 original size:26 final size:26
Alignment explanation
Indices: 26997682--26997732 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
26997672 TGGCTTAGGC
26997682 ATACGGAGTTCATT-CCATGTCTAAGG
1 ATACGGAGTTCATTCCCA-GTCTAAGG
26997708 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
26997733 ATTTTGAGCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:26998433 original size:26 final size:26
Alignment explanation
Indices: 26998403--26998455 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26998393 GTTGACTTAG
26998403 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
26998429 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
26998455 G
1 G
26998456 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:26999145 original size:159 final size:159
Alignment explanation
Indices: 26998784--26999284 Score: 469
Period size: 159 Copynumber: 3.2 Consensus size: 159
26998774 CCTAGTCTAA
* * *
26998784 GCATACGGAGTTCATTTCCA-GTCTAAGATCAGACTAAACCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATATGGAGTTCA-TTCCATGTCTAAGATCAGACCAAACCGAGGGTTGCGGTAGCAGGATCAAC
** * * * * * **
26998848 AGCACGTAGA-GGGGACTGGGCCGATCCCCAGCTTGTGCATTTTACCTCTCCGGCCGGCTGTGCG
65 AGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAACG
* * *
26998912 CCCGCACGCCCATTTCGTGGGTTGGCTTAG
130 GCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *** * ** * * * *
26998942 GCATAGGGAGCTCATTCCATGTCTAATCCCCAG-TCGGACCGAGGGTTGTGGTAGCGGGACCTAC
1 GCATATGGAGTTCATTCCATGTCTAA-GATCAGACCAAACCGAGGGTTGCGGTAGCAGGATCAAC
* * *
26999006 AGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCAGCTCAACG
65 AGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAACG
* *
26999071 GCCGCACGCTCGTTTCGTGGGTTGACTTAT
130 GCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * ** *
26999101 GTATATGGAGTTCATTCCCA-GTCTAAGATTGGACCAAACTGAGGGTTGCGACAGTAGGATCAAC
1 GCATATGGAGTTCATT-CCATGTCTAAGATCAGACCAAACCGAGGGTTGCGGTAGCAGGATCAAC
* ** * * * * *
26999165 AGCACACAG-GGGGGATCGGGTTGA-CTCCGGCTTGCGCGTTCTGCCTCTCCGGTCGGC-GGA-G
65 AGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAACG
*
26999226 TGCCTGCACGTTCGTTTCGTGGGTTGGCTTAG
130 -GCC-GCACGCTCGTTTCGTGGGTTGGCTTAG
26999258 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
26999285 CATATGGAGC
Statistics
Matches: 271, Mismatches: 64, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
155 1 0.00
156 7 0.03
157 78 0.29
158 62 0.23
159 120 0.44
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAGACCAAACCGAGGGTTGCGGTAGCAGGATCAACA
GCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAACGG
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:26999308 original size:26 final size:26
Alignment explanation
Indices: 26999258--26999310 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
26999248 GTTGGCTTAG
* *
26999258 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGCTCATTCCATATCTAA
26999284 GCATATGGAGCTCATTCCCA-ATCTAA
1 GCATATGGAGCTCATT-CCATATCTAA
26999310 G
1 G
26999311 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGCTCATTCCATATCTAA
Found at i:27006787 original size:158 final size:156
Alignment explanation
Indices: 27006299--27006809 Score: 494
Period size: 159 Copynumber: 3.2 Consensus size: 156
27006289 CCCAGTCTAA
* * * *
27006299 GCATACGGAGTTCATTCC-TAGTGTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGAGCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * *
27006363 AGCACGCAGGGGGATCAGGCCGATCCTCGGCTTGCACATTTTGCCTCTCCGGTCAGCTGA-CAGC
65 AGCACGCAGGGGGATCAGGCCGATCC-CGGCTTGCGCATTATGCCTCTCCGGACAGCTGAGC-GC
*
27006427 CCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * * *
27006456 GCATAGGGAGCTCATTCCATGTCTAAG-CCCCAGCCGGACCGAGGGTTGTGGTAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGAG-CGGACCGAGGGTTGCGGTAGCAGGATC-GA
* * * * *
27006519 CAGCACGCAGAGGGGGACCAGGCCGATCCCTGGTTTGCGCATTATGGCTCTTC-GACAGGCTCAG
64 CAGCACGC--AGGGGGATCAGGCCGATCCC-GGCTTGCGCATTATGCCTCTCCGGACA-GCTGAG
* * * *
27006583 CGCCCGTACGCTCATTTCGTGGGTTGACTTAT
125 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * *
27006615 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGAGTAGACCAAGGGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGAGCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * *
27006679 AGCACACAGGGGTGATCGGGTCGATTCCCGGCTTGCGCCTTCTGCCTCTCCGGCCAGCTGAGCGC
65 AGCACGCAGGGG-GATCAGGCCGA-TCCCGGCTTGCGCATTATGCCTCTCCGGACAGCTGAGCGC
* * **
27006744 CTGCACGCTCGTTTCATGGGAAGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
27006773 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGC
1 GCATACGGAGTTCATTCCATGTCTAAG-AT-CGGAGC
27006810 TCATTCCTAG
Statistics
Matches: 279, Mismatches: 58, Indels: 31
0.76 0.16 0.08
Matches are distributed among these distances:
156 3 0.01
157 60 0.22
158 81 0.29
159 122 0.44
160 13 0.05
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGAGCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGATCAGGCCGATCCCGGCTTGCGCATTATGCCTCTCCGGACAGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:27006803 original size:26 final size:26
Alignment explanation
Indices: 27006773--27006825 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27006763 GAAGGCTTAG
*
27006773 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGCTCATTCCTA-GTCTAA
*
27006799 GCATACGGAGCTCATTCCTAGTCTAA
1 GCATACAGAGCTCATTCCTAGTCTAA
27006825 G
1 G
27006826 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCTAGTCTAA
Found at i:27007863 original size:171 final size:170
Alignment explanation
Indices: 27007556--27007864 Score: 372
Period size: 171 Copynumber: 1.8 Consensus size: 170
27007546 TTGAGGGTTG
* * **
27007556 CGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGGTCCCCGGCTTGCTTATTTTGCCTCT
1 CGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTTTGCCTCT
* * * * *
27007621 CCGATCGGTTGAGCGCACGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAAAGTACATTCCAT
66 CCGATCGGCTGAGCGCACACACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTACATCCCAT
27007686 GTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGAC
131 GTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGAC
* **
27007726 CGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGTTGATCCTCC-GCTTACGCATTATT-CC
1 CGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCC-CCGGCTTACGCATT-TTGCC
* * * ** * ** *
27007789 TCTCCGGTCGGCTGAGTGCCCACACGCTTGTTTCATGGGTTGACTTAGGGATACGGAGTTCATCC
63 TCTCCGATCGGCTGAGCGCACACACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTACAT-C
27007854 CCA-GTCTAAGC
127 CCATGTCTAAGC
27007865 ATACGGAGTT
Statistics
Matches: 114, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
170 24 0.21
171 83 0.73
172 7 0.06
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.21
Consensus pattern (170 bp):
CGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTTTGCCTCT
CCGATCGGCTGAGCGCACACACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTACATCCCAT
GTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGAC
Found at i:27007869 original size:26 final size:26
Alignment explanation
Indices: 27007839--27007889 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
27007829 TGACTTAGGG
27007839 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
27007865 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
27007890 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:27008240 original size:159 final size:158
Alignment explanation
Indices: 27007863--27008513 Score: 599
Period size: 159 Copynumber: 4.1 Consensus size: 158
27007853 CCCAGTCTAA
*
27007863 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGGCA
* * * * ** * * *
27007928 GCACGCAGGGGGGACCGGGCCGATCCACGACTTGTTCATTTTGCCTCTTCGGTCGGCTGAGCGCC
66 GCACGCAGGAGGGACCCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTCAGCGCC
* * *
27007993 CGCACGCCCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCATGGGTTGACTTAG
* * ** * ** *
27008021 GCATATGGAGCTCATT-CCATGTCT-A-ATCCCCAGCCGGATCGAGGGTTGTGGCAGCGGGATCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGAT-CGGA-CCGGACCGAGGGTTACGGCAGCAGGATCG
* * * ** * * * *
27008083 GTAGCACGTAGAGAGGGACCCGGTCGATCCTTGGCTTGCACATTATGCCTTTTCGACCGGCTCAG
63 GCAGCACGCAG-GAGGGACCCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTCAG
* *
27008148 TGCCCGCACGCTCGTTTCATGGGTTGACTTAT
127 CGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * ** *
27008180 GCATACGGAGTTCATTTCCAGTCTAAGATCGGACCAGACCGAGAGTTGGGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGGCA
* * * * * * * * *
27008245 ACACGCAGGGGGGA-TCGAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGTTCAACAC
66 GCACGCAGGAGGGACCCG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTCAGCGC
*
27008309 CCGCACGCTCGTTTCATGGGTTGACTTAT
130 CCGCACGCTCGTTTCATGGGTTGACTTAG
* * * **
27008338 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGGCA
** * * * * * * * *
27008403 GCATACAAGGAGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGTCAGTTGAGTGC
66 GCACGC-AGGAGGGACCCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTCAGCGC
* * * * *
27008468 CTGTACGCTCATTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCATGGGTTGACTTAG
*
27008497 GCATACGGAGTACATTC
1 GCATACGGAGTTCATTC
27008514 AATGTCCAAG
Statistics
Matches: 392, Mismatches: 91, Indels: 19
0.78 0.18 0.04
Matches are distributed among these distances:
156 2 0.01
157 8 0.02
158 176 0.45
159 197 0.50
160 7 0.02
161 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGGCA
GCACGCAGGAGGGACCCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTCAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:27008490 original size:317 final size:317
Alignment explanation
Indices: 27007863--27008513 Score: 691
Period size: 317 Copynumber: 2.1 Consensus size: 317
27007853 CCCAGTCTAA
* * *
27007863 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGAGTTACGGCAGCAGGATCGGCA
* * * ** * * * * * * *
27007928 GCACGCAGGGGGGACCGGGCCGATCCACGACTTGTTCATTTTGCCTCTTCGGTCGGCTGAGCGCC
66 ACACGCAGGGGGGACCGAGCCAATCCACGACTTGCGCATTCTACCTCTCCGATCGGCTCAACACC
* * *
27007993 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATATGGAGCTCATTCCATGTCTAATCCCCAGCCGG
131 CGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCATGTCTAATCCCCAGCCGG
* ** ** * * * ** *
27008058 ATCGAGGGTTGTGGCAGCGGGATCGGTAGCACGTAGAGAGGGACCCGGTCGATCCTTGGCTTGCA
196 ACCGAGGGTTACGGCAGCAAGATCGATAGCACGAAGAGAGGGACCAGGTCGATCCCCGGCTTACA
* * * *
27008123 CATTATGCCTTTTCGACCGGCTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAT
261 CATTATGCCTCTTCGACCAGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAG
* ** *
27008180 GCATACGGAGTTCATTTCCAGTCTAAGATCGGACCAGACCGAGAGTTGGGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGAGTTACGGCAGCAGGATCGGCA
* * * *
27008245 ACACGCAGGGGGGATCGAGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGTTCAACACC
66 ACACGCAGGGGGGACCGAGCCAATCCACGACTTGCGCATTCTACCTCTCCGATCGGCTCAACACC
* * * ** *
27008310 CGCACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGAT-CGGA-T
131 CGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATT-CCATGTCT-A-ATCCCCAGC
*
27008372 CGGACCGAGGGTTACGGTAGCAAGATCGATAGCATAC-AAG-GAGGGACCAGGTCGATCCCCGGC
193 CGGACCGAGGGTTACGGCAGCAAGATCGATAGC--ACGAAGAGAGGGACCAGGTCGATCCCCGGC
* * ** * * * * * *
27008435 TTACGCATTCTGCCTCTTCGGTCAGTTGAGTGCCTGTACGCTCATTTCGTGGGTTGGCTTAG
256 TTACACATTATGCCTCTTCGACCAGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAG
*
27008497 GCATACGGAGTACATTC
1 GCATACGGAGTTCATTC
27008514 AATGTCCAAG
Statistics
Matches: 269, Mismatches: 60, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
317 257 0.96
318 8 0.03
319 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGAGTTACGGCAGCAGGATCGGCA
ACACGCAGGGGGGACCGAGCCAATCCACGACTTGCGCATTCTACCTCTCCGATCGGCTCAACACC
CGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCATGTCTAATCCCCAGCCGG
ACCGAGGGTTACGGCAGCAAGATCGATAGCACGAAGAGAGGGACCAGGTCGATCCCCGGCTTACA
CATTATGCCTCTTCGACCAGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAG
Found at i:27008849 original size:26 final size:26
Alignment explanation
Indices: 27008813--27008865 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27008803 GTTGACTTAG
*
27008813 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27008839 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27008865 G
1 G
27008866 ATTGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27009286 original size:158 final size:151
Alignment explanation
Indices: 27009071--27009478 Score: 457
Period size: 148 Copynumber: 2.7 Consensus size: 151
27009061 AGCACGTAGA
* * * * * *
27009071 GGGGGACCCGG-CTGATCCCCGGCTTGCGCAGTATGCCTCTTCGATCGGCTCAGCGCCCGTACGC
1 GGGGGACCAGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGCCCGCACGC
* *
27009135 TCGTTTCGTGGGTTGACTTATGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCAGACCAAGA
65 TCGTTTCGTGGGTTG-CTTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-GGA-CAG----AGA
* *
27009200 GTTGGGGCAGCAAGATCGGCAACACGCAG
123 GTTAGGGCAGCAAGATCGACAACACGCAG
* * * *
27009229 GGGGGACCGGGTCGATCCCCGGCTTCCGCATTCTACCTCTCCGGTCGGCTCAACGCCCGCACGCT
1 GGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGCCCGCACGCT
* * * *
27009294 CATTTCGT-GG-T-C-TAAGCATACGGAGTTCATTCCCAGTCTAAGATGGACTGAGGGTTATGGC
66 CGTTTCGTGGGTTGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATGGACAGAGAGTTAGGGC
* *
27009355 AGCAAGATTGACAGCACGCAG
131 AGCAAGATCGACAACACGCAG
* * * * *
27009376 GGAAGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCACCCGCACGC
1 GG-GGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGCCCGCACGC
*
27009441 TCGTTTCGTGGGTTGGCTTAAGCATACGGAGTGCATTC
65 TCGTTTCGTGGGTT-GCTTAAGCATACGGAGTTCATTC
27009479 AATGTCTAAG
Statistics
Matches: 213, Mismatches: 30, Indels: 19
0.81 0.11 0.07
Matches are distributed among these distances:
147 28 0.13
148 61 0.29
149 2 0.01
150 1 0.00
151 2 0.01
152 4 0.02
153 49 0.23
154 1 0.00
156 1 0.00
157 2 0.01
158 61 0.29
159 1 0.00
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (151 bp):
GGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGCCCGCACGCT
CGTTTCGTGGGTTGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATGGACAGAGAGTTAGGGC
AGCAAGATCGACAACACGCAG
Found at i:27010616 original size:25 final size:26
Alignment explanation
Indices: 27010581--27010632 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
27010571 GTTGACTTAG
*
27010581 GCATACGGAGTTCAA-CCCAATCTAA
1 GCATACAGAGTTCAATCCCAATCTAA
*
27010606 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAATCTAA
27010632 G
1 G
27010633 GTCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAATCTAA
Done.