Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 282 of 402
Found at i:27010972 original size:26 final size:26
Alignment explanation
Indices: 27010935--27010987 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27010925 GTTGACTTAG
*
27010935 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
27010961 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27010987 G
1 G
27010988 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27011157 original size:354 final size:354
Alignment explanation
Indices: 27010508--27011168 Score: 834
Period size: 354 Copynumber: 1.9 Consensus size: 354
27010498 ACCACCCGTT
* * * *
27010508 CGATCCCTGACTTGCGCATCCTACCTCTCTAGTCGACTGAGTGCCCGCACGCTCGTTTTGTGGGT
1 CGATCCCTGACTTACGCATCCTACCTCTCCAGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGT
*
27010573 TGACTTAGGCATACGGAGTTCAACCCAATCTAAGCATACAGAGTTCAATCCCAGTCTAAGGTCAG
66 TGACTTAGGCATACGGAGTTCAACCCAATCTAAGCATACAGAGTTCAATCCCAGTCTAAGATCAG
* * * * *
27010638 ACCGGATCGAAGGTTGCGGCAGCAAGATCGGCAGCACGTAGGGGGGATCGGATCGATCCCTGGCT
131 ACCGAATCGAAGGTTGCGGCAGCAAGATCGGCAACACGCAGGGGGGACCGGACCGATCCCTGGCT
* * * *
27010703 TGCACATTCTACCTCTCCAGCCGGCTGAGAGCCCGCATGATCGTTTCGTACGTTGGCTTAGGCAT
196 CGCACATTCTACCTCTCCAGCCGACTAAGAGCCCGCACGATCGTTTCGTACGTTGGCTTAGGCAT
*
27010768 ACGGAGTACATTCCATGTCTAAGCCTCAACCGGACCGAGGGTTGTGGTTGTAGGACCGGCAACAG
261 ACGGAGTACATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTTGTAGGACCGGCAACAG
27010833 GATCGGTAGCACGCAGAGGGGGATCGGGC
326 GATCGGTAGCACGCAGAGGGGGATCGGGC
* * * * * *
27010862 CGATCCCTGGCTTACGCATTCTACCTCTCCGGCCGGCTGAGTGCCTGCACGCTTGTTTCGTGGGT
1 CGATCCCTGACTTACGCATCCTACCTCTCCAGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGT
* * *
27010927 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC-GAAGTTCATTCCCAGTCTAAGATC
66 TGACTTAGGCATACGGAGTTCA-ACCCAATCTAAGCATACAG-AGTTCAATCCCAGTCTAAGATC
* * * * *
27010991 -GAACCGAATC-AAGGGTTGTGGTAG-ATTGATCGGTAACACGCA-GGGGGACCGGGCCGAT-CC
129 AG-ACCGAATCGAA-GGTTGCGGCAGCA-AGATCGGCAACACGCAGGGGGGACCGGACCGATCCC
* * * * * * * **
27011051 TCGGCTCGCTCATTTTGCCTCTCCGGTCGACTAAGTGCCCGCACG-CCTGTTTCGTGGGTTGGCT
191 T-GGCTCGCACATTCTACCTCTCCAGCCGACTAAGAGCCCGCACGATC-GTTTCGTACGTTGGCT
* *
27011115 TAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGG
254 TAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGG
27011169 CAGCGGGACC
Statistics
Matches: 259, Mismatches: 40, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
353 4 0.02
354 191 0.74
355 64 0.25
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (354 bp):
CGATCCCTGACTTACGCATCCTACCTCTCCAGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCAACCCAATCTAAGCATACAGAGTTCAATCCCAGTCTAAGATCAG
ACCGAATCGAAGGTTGCGGCAGCAAGATCGGCAACACGCAGGGGGGACCGGACCGATCCCTGGCT
CGCACATTCTACCTCTCCAGCCGACTAAGAGCCCGCACGATCGTTTCGTACGTTGGCTTAGGCAT
ACGGAGTACATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTTGTAGGACCGGCAACAG
GATCGGTAGCACGCAGAGGGGGATCGGGC
Found at i:27011321 original size:159 final size:158
Alignment explanation
Indices: 27011158--27011463 Score: 355
Period size: 158 Copynumber: 1.9 Consensus size: 158
27011148 CAGCCGGACC
* * * *
27011158 GAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGACC-GAGTCGATCCCCGGCTTGCGCA
1 GAGGGTTGTGGCAGCAGGACCGACAGCACGCAG-GGGGGACCAG-GTCGATCCCCGACTTGCACA
* * * * ** *
27011222 TTAC-ACCTCTTCGATTGGCTTAATGCCCGCACACTCATTTTGTGGGTTGACTTATGCATACGGA
64 TT-CTACCTCTCCGACTGACTGAATGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGA
**
27011286 GTTCATTCCCAGTCTAAGATCGGACTGGATT
128 CCTCATTCCCAGTCTAAGATCGGACTGGATT
* * * * * *
27011317 GAGGGTTGTGGTAGCAGGATCGACAGCACGCTGGGGGGACCAGGTCGATCCCTGACTTTCACGTT
1 GAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGACCAGGTCGATCCCCGACTTGCACATT
* * * * *
27011382 CTATCTCTCCGACTGACTGAGTGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGACCT
66 CTACCTCTCCGACTGACTGAATGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGACCT
27011447 CATTCCCAGTCTAAGAT
131 CATTCCCAGTCTAAGAT
27011464 TTTGAGCCAT
Statistics
Matches: 121, Mismatches: 24, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.01
158 91 0.75
159 29 0.24
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
GAGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGACCAGGTCGATCCCCGACTTGCACATT
CTACCTCTCCGACTGACTGAATGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGACCT
CATTCCCAGTCTAAGATCGGACTGGATT
Found at i:27012145 original size:27 final size:27
Alignment explanation
Indices: 27012115--27012167 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
27012105 TTGGCTTCGG
*
27012115 CATACAGAGTTCATT-CCATGTCTAAGC
1 CATACAGAGCTCATTCCCA-GTCTAAGC
27012142 CATACAGAGCTCATTCCCAGTCTAAG
1 CATACAGAGCTCATTCCCAGTCTAAG
27012168 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 21 0.88
28 3 0.12
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CATACAGAGCTCATTCCCAGTCTAAGC
Found at i:27013237 original size:26 final size:26
Alignment explanation
Indices: 27013201--27013253 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27013191 GTTGACTTAG
27013201 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27013227 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27013253 G
1 G
27013254 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27017858 original size:26 final size:26
Alignment explanation
Indices: 27017828--27017880 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
27017818 GTTGACTTAG
27017828 GCATAC-GAAGTTCA-TCCGCAATCTAA
1 GCATACAG-AGTTCACTCC-CAATCTAA
*
27017854 GCATACAGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAATCTAA
27017880 G
1 G
27017881 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAATCTAA
Found at i:27018062 original size:26 final size:26
Alignment explanation
Indices: 27018012--27018064 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
27018002 GTTGGCTTAG
*
27018012 GCATACGGAGTACATTCCATGTCTAA
1 GCATACGGAGTACATTCCATATCTAA
27018038 GCATACGGAGCT-CATTACCA-ATCTAA
1 GCATACGGAG-TACATT-CCATATCTAA
27018064 G
1 G
27018065 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTACATTCCATATCTAA
Found at i:27018752 original size:26 final size:26
Alignment explanation
Indices: 27018715--27018767 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27018705 GATGACTTAG
27018715 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
27018741 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27018767 G
1 G
27018768 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27019999 original size:26 final size:26
Alignment explanation
Indices: 27019961--27020012 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27019951 TTGACATAGC
*
27019961 CATACGGAGTTCA-TCCTCAGTCTAAG
1 CATACGGAATTCATTCC-CAGTCTAAG
27019987 CATACGGAATTCATTCCCAGTCTAAG
1 CATACGGAATTCATTCCCAGTCTAAG
27020013 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGGAATTCATTCCCAGTCTAAG
Found at i:27020539 original size:367 final size:368
Alignment explanation
Indices: 27019610--27020945 Score: 1006
Period size: 368 Copynumber: 3.6 Consensus size: 368
27019600 ACAAGGATCA
* * * ** * *
27019610 CCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATC-GAACCGGACCGAGAGATGTG-GTAG
1 CCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCAG-ACCGGATAGAG-GGT-TGCGCAG
** * * * * * * **
27019673 CAGGATCTCCAGCACGCA-GAGGGACCGGGCTGATTCTTGGCTTACGCATTCTACCTCTCCGACC
63 CAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGTATTCTACCTCTCCGGTC
* * * * * * * *
27019737 AGCT-AG-GCGTCCGCACGCCCGTTCCATGGGTTGGCTTAGGCATAAGGAGCT-CATTCCATGTC
128 GGTTGAGTGC--CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCAAGTC
* * * * ** * **
27019799 TAAGCCCCAGTCGGACTGAGGGCTGTGGCAGC-G-A--A-ACTGGCAATGAGATCGACAGCATGC
190 TAAGCCCCA-CCAGACCGAGGGTTGTGGCAGCAGCAGCAGACCAGC-A-GGGATCGACAGCACAC
* * * * * * * * * * *
27019859 AAAGAGGGGCCAGGCTAATCCTCAGCTTGCCCATTATGCTTCGCC-GACCGACCTCTCCGGCCGA
252 AAAG-GGGACCAGGCTAATCATCAGCTTACGCATTATGCCTCTCCGGACAGA-CTATCCGACTGG
* * ** * ** * *
27019923 TTGAGCGTCCGCACGTTCGTTTCGTGGGTTGACATAGCCATACGGAGTTCATCC
315 CTGAACACCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCC
* * * *
27019977 TCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCAGACTGGATCA-AGAGTTACGACAGC
1 CCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCAGACCGGAT-AGAGGGTTGCG-CAGC
* * * * * * * * * * *
27020041 ATGATCGATAGCATGCAGGGGGGACTGGGCCGAT-CCTCGGTTTACGCATTTTGCCTGTCCGATC
64 AGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCT-GGCTTGCGTATTCTACCTCTCCGGTC
* * * * * *
27020105 GGCTGAGAGCCCACACGCTTGTTTCGTGGGTTGGCTTAGGCATATGAAGTACATTCCACGTCTAA
128 GGTTGAGTGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCAAGTCTAA
* * * *
27020170 GCCCCTACCAGACCGAGGGTTGTGGCAGCAGGATC-GA-CAGTA-GGATCGACAGCACGTAGAAA
193 GCCCC-ACCAGACCGAGGGTTGTGGCAGCAGCAGCAGACCAGCAGGGATCGACAGCAC--ACAAA
* * ** * * * * * *
27020232 -GGGACCGGGTTAATCATTGGCTTACGCATTATGCCTCTCTGGACGGATTATTCG-GTGGGTTGA
255 GGGGACCAGGCTAATCATCAGCTTACGCATTATGCCTCTCCGGACAGACTATCCGACT-GGCTGA
* ** *
27020295 GCACCCGTACACTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCC
319 ACACCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCC
* * * *
27020345 CCAGTTTAAGCATATGGATTTCATT-CTAGTCTAAGATCAGACCGGATAGAGGGTTGCAGCAGCA
1 CCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGC-GCAGCA
* * * *
27020409 GGATCGACAACACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGTATTCTACCTTTCTGGCCGG
65 GGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGTATTCTACCTCTCCGGTCGG
* *
27020474 TTGAGTGCCTACACGATCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCAAGTCTAAGC
130 TTGAGTGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCAAGTCTAAGC
*** * *
27020539 CCCAGTTGAACTGAGGGTTGTGGTAGCAGGACCAGCAGCAGGACCAGCAGCGGGATCGGCAGCAC
195 CCCACCAG-ACCGAGGGTTGT-G--GCA-G--CAGCAGCA-GACCAGCA--GGGATCGACAGCAC
* * * * * * *
27020604 ACAAAGGGGGATCAGGCTGATCCTCAGCTTACGTATTATGCCTCTCCGGCCAGCCTCTCCGACTG
250 ACAAA-GGGGACCAGGCTAATCATCAGCTTACGCATTATGCCTCTCCGGACAGACTATCCGACTG
* * **
27020669 GCTGAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATCC
314 GCTGAACACCCACACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCC
* * * * *
27020724 CCAATCTAAGCATACGGAGTTCATTCCCAGTTTAAGATCAGACCGGATCGAGGGTTGCGGTAGCA
1 CCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGC-GCAGCA
*
27020789 GGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGACTTGC-TCATTCTACCTCTCCGGTCG
65 GGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGT-ATTCTACCTCTCCGGTCG
* * * * * *
27020853 GTTGAGTGCCCGCACGCTCATTTTGTGGGTTGGCTTAGGCATAGGGAGCT-TATTCCATGTCTAA
129 GTTGAGTGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCAAGTCTAA
* * *
27020917 GCCCCAGTCGGACCGAGAGTTGTGGCAGC
193 GCCCCA-CCAGACCGAGGGTTGTGGCAGC
27020946 TGGACTGACA
Statistics
Matches: 765, Mismatches: 162, Indels: 77
0.76 0.16 0.08
Matches are distributed among these distances:
365 1 0.00
366 5 0.01
367 209 0.27
368 223 0.29
369 9 0.01
370 10 0.01
371 2 0.00
372 1 0.00
373 5 0.01
374 1 0.00
375 2 0.00
376 5 0.01
377 7 0.01
379 121 0.16
380 162 0.21
381 2 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (368 bp):
CCAGTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGCGCAGCAG
GATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGTATTCTACCTCTCCGGTCGGT
TGAGTGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCAAGTCTAAGCC
CCACCAGACCGAGGGTTGTGGCAGCAGCAGCAGACCAGCAGGGATCGACAGCACACAAAGGGGAC
CAGGCTAATCATCAGCTTACGCATTATGCCTCTCCGGACAGACTATCCGACTGGCTGAACACCCA
CACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCC
Found at i:27020580 original size:12 final size:12
Alignment explanation
Indices: 27020563--27020589 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
27020553 GGGTTGTGGT
27020563 AGCAGGACCAGC
1 AGCAGGACCAGC
27020575 AGCAGGACCAGC
1 AGCAGGACCAGC
27020587 AGC
1 AGC
27020590 GGGATCGGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.33, G:0.33, T:0.00
Consensus pattern (12 bp):
AGCAGGACCAGC
Found at i:27021098 original size:159 final size:159
Alignment explanation
Indices: 27020733--27021386 Score: 557
Period size: 159 Copynumber: 4.1 Consensus size: 159
27020723 CCCAATCTAA
* ** * * * *
27020733 GCATACGGAGTTCATTCCCA-GTTTAAG-ATCAGACCGGA-TCGAGGGTTGCGGTAGCAGGATCG
1 GCATACGGAGTTCATTCCCACGTCTAAGCCCCAG-TCGGACT-GAGGGTTGTGGCAGCTGGATCG
** * * * * * *
27020795 ACAGCACGCAGGGGGGACCGGGCCGATCCCTGACTTGCT-CATTCTACCTCTCCGGTCGGTTGAG
64 ACAGCACGCAGGGGGGACCGATCCGATCCCTGGCTTG-TGCATTATACCTCTCCGGCCAGCTCAG
* * * * *
27020859 TGCCCGCACGCTCATTTTGTGGGTTGGCTTAG
128 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
* * * *
27020891 GCATAGGGAGCTT-ATT-CCATGTCTAAGCCCCAGTCGGACCGAGAGTTGTGGCAGCTGGA-CTG
1 GCATACGGAG-TTCATTCCCACGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCTGGATC-G
* * *
27020953 ACAGCATGCAGAGGGGGACCGATCCGAT-CCTCGGCTTGTGCATTATGCCTCTTCGGCCAGCTCA
64 ACAGCACGCAG-GGGGGACCGATCCGATCCCT-GGCTTGTGCATTATACCTCTCCGGCCAGCTCA
*
27021017 GCGCCTGCACGCTCGTTTCGTGGGTTGACTTAT
127 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
* ** * *
27021050 GCATACGGAGTTTATTCCCA-GTCTAAG-ATCGGATCGGACTGAGGGTTGTAGCAG-TAGGATCG
1 GCATACGGAGTTCATTCCCACGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGCT-GGATCG
* * * * * *
27021112 ACAGCACGTAGGGGGGACCAGAT-CGATCCCTGGCTTGCGCATTCTACCTCCCCGACC-GACTGA
64 ACAGCACGCAGGGGGGACC-GATCCGATCCCTGGCTTGTGCATTATACCTCTCCGGCCAG-CTCA
* * *
27021175 GCGCCCGCATGCTCGTTTCATGGGTT-AGCTTAA
127 GCGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAT
* * *
27021208 GCATACGGAGTACATT-CCACGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGTAGCTGGA-CTGG
1 GCATACGGAGTTCATTCCCACGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCTGGATC-GA
* * * ** * * * *
27021271 CAGCACGCAGAGGGGGATCGGTCCAATCCCCAGCTTGGGCATTATGCCTCTTCGGCCAGCTCAGT
65 CAGCACGCAG-GGGGGACCGATCCGATCCCTGGCTTGTGCATTATACCTCTCCGGCCAGCTCAGC
** *
27021336 GCTTGAACGCTCGTTTCGTGGGTTGACTTAT
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAT
27021367 GCATACGGAGTTCATTCCCA
1 GCATACGGAGTTCATTCCCA
27021387 ATCGTGGGTT
Statistics
Matches: 394, Mismatches: 76, Indels: 50
0.76 0.15 0.10
Matches are distributed among these distances:
157 10 0.03
158 174 0.44
159 201 0.51
160 9 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCACGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCTGGATCGAC
AGCACGCAGGGGGGACCGATCCGATCCCTGGCTTGTGCATTATACCTCTCCGGCCAGCTCAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAT
Found at i:27021315 original size:317 final size:317
Alignment explanation
Indices: 27020733--27021386 Score: 889
Period size: 317 Copynumber: 2.1 Consensus size: 317
27020723 CCCAATCTAA
* * *
27020733 GCATACGGAGTTCATTCCCAGTTTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGACA
* * * * ** ** *
27020798 GCACGCAGGGGGGACCGGGCCGATCCCTGACTTGCTCATTCTACCTCTCCGGTCGGTTGAGTGCC
66 GCACGCAGGGGGGACCAGACCGATCCCTGACTTGCGCATTCTACCTCCCCGACCGACTGAGCGCC
** * * * * *
27020863 CGCACGCTCATTTTGTGGGTTGGCTTAGGCATAGGGAGCTTATTCCATGTCTAAGCCCCAGTCGG
131 CGCACGCTCATTTCATGGGTTAGCTTAAGCATACGGAGCTCATTCCACGTCTAAGCCCCAGTCGG
* * * * *
27020928 ACCGAGAGTTGTGGCAGCTGGACTGACAGCATGCAGAGGGGGACCGATCCGATCCTCGGCTTGTG
196 ACCGAGAGTTGTGGCAGCTGGACTGACAGCACGCAGAGGGGGACCGATCCAATCCCCAGCTTGGG
*
27020993 CATTATGCCTCTTCGGCCAGCTCAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAT
261 CATTATGCCTCTTCGGCCAGCTCAGCGCCTGAACGCTCGTTTCGTGGGTTGACTTAT
* * * * *
27021050 GCATACGGAGTTTATTCCCAGTCTAAGATCGGATCGGA-CTGAGGGTTGTAGCAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCAGCAGCAGGATCGAC
* * *
27021114 AGCACGTAGGGGGGACCAGATCGATCCCTGGCTTGCGCATTCTACCTCCCCGACCGACTGAGCGC
65 AGCACGCAGGGGGGACCAGACCGATCCCTGACTTGCGCATTCTACCTCCCCGACCGACTGAGCGC
* *
27021179 CCGCATGCTCGTTTCATGGGTTAGCTTAAGCATACGGAG-TACATTCCACGTCTAAGCCCCAGTC
130 CCGCACGCTCATTTCATGGGTTAGCTTAAGCATACGGAGCT-CATTCCACGTCTAAGCCCCAGTC
* * * * * *
27021243 GGACTGAGGGTTGTGGTAGCTGGACTGGCAGCACGCAGAGGGGGATCGGTCCAATCCCCAGCTTG
194 GGACCGAGAGTTGTGGCAGCTGGACTGACAGCACGCAGAGGGGGACCGATCCAATCCCCAGCTTG
* *
27021308 GGCATTATGCCTCTTCGGCCAGCTCAGTGCTTGAACGCTCGTTTCGTGGGTTGACTTAT
259 GGCATTATGCCTCTTCGGCCAGCTCAGCGCCTGAACGCTCGTTTCGTGGGTTGACTTAT
27021367 GCATACGGAGTTCATTCCCA
1 GCATACGGAGTTCATTCCCA
27021387 ATCGTGGGTT
Statistics
Matches: 291, Mismatches: 44, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
316 2 0.01
317 289 0.99
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCGACA
GCACGCAGGGGGGACCAGACCGATCCCTGACTTGCGCATTCTACCTCCCCGACCGACTGAGCGCC
CGCACGCTCATTTCATGGGTTAGCTTAAGCATACGGAGCTCATTCCACGTCTAAGCCCCAGTCGG
ACCGAGAGTTGTGGCAGCTGGACTGACAGCACGCAGAGGGGGACCGATCCAATCCCCAGCTTGGG
CATTATGCCTCTTCGGCCAGCTCAGCGCCTGAACGCTCGTTTCGTGGGTTGACTTAT
Found at i:27021739 original size:26 final size:26
Alignment explanation
Indices: 27021692--27021742 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
27021682 TTGACTTAGG
*
27021692 ATACGGACTTCATCCCTGGTCTAAGC
1 ATACGGACTTCATCCCTAGTCTAAGC
*
27021718 ATACGGAGTTCATTCCC-AGTCTAAG
1 ATACGGACTTCA-TCCCTAGTCTAAG
27021743 ATCGGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGACTTCATCCCTAGTCTAAGC
Found at i:27022403 original size:26 final size:26
Alignment explanation
Indices: 27022373--27022425 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27022363 GTTGACTTAG
27022373 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
27022399 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27022425 G
1 G
27022426 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27023158 original size:669 final size:673
Alignment explanation
Indices: 27021467--27023258 Score: 1984
Period size: 683 Copynumber: 2.6 Consensus size: 673
27021457 CGTCTCTGAC
* * * *
27021467 CGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTA
1 CGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-AGAGTACATTCCACGTCTA
** * * * * * * * * *
27021532 AGCCCCAGTCGGACTTAGGGTTATGGTACCAGGATCGACAGTGGGATCAGCAACATGCAGAGGGG
65 AGCCCCAGTCGGACCGAGGGTTGTGGTAGCAAGACCGACAGCGGGATCGGCAGCACGTAGAGGGG
* * ** * * *
27021597 GACTGGGTTGATCCCTGACTTACGCATTATG-TCTCTTCGGCCAGCCTCTGCGGTTGGCTGAGCA
130 GACTGGGTTGATCCCCGACTTACGCATTATGCT-TCTCCGATC-GCCTCT-CTGTCGGCTGAGCG
* * *
27021661 CGTGCACGCTCGTTTTGTGGGTTGACTTAGG-ATACGGACTTCATCCCTGGTCTAAGCATACGGA
192 CCTGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGA
* * * *
27021725 GTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTAGCGGTAGCAGGATAGACAGCATGCAGA
257 GTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGCAGCAGGATAGACAGCACGCAG-
* ** * *
27021790 GGGGACCGGGTTGATCCTCGGCTTATGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGTACGCCC
321 GGGGACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGCCC
* * * * * *
27021855 GTTTCATGAGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCGCCAACTGGACTGAGGGT
386 GTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCTAGACTGAAGGT
** *
27021920 TGTTTCAACGGGACTGGCAGCACGCAGAGGTGGACCAAGTCAATCCCCGACTTACGCATTATGCC
451 TGTGGCAACGGGACT-GCAGCACGCA-A---GCACCAAG--AATCCCCGACTTACGCATTATGCC
** *
27021985 TATCCGACCAGTTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTC
509 TATCCGACCACCTCAACACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTC
* ***
27022050 CTAGTCTAAGATCAGACCAGACCGAGCGTTACGATAGCAGGATCAACAGCATGTGGGGGGATCGG
574 CCAGTCTAAGATCAGACCAGACCGAGCGTTACGATAGCAGGATCAACAGCACAAGGGGGGATCGG
* * *
27022115 GTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGT
639 GTCGATCCCCGACTTACGCATTCTACCTCTCCGGA
* * * *
27022150 CGACTGAGCGCCTGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTA
1 CGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAG-AGTACATTCCACGTCTA
* * * * * *
27022215 AGCCCCAGTCGGACCGAAGGTTGTGGCAGCGAGACCGATAGCGGGATCGACAGCACGTAGAGGAG
65 AGCCCCAGTCGGACCGAGGGTTGTGGTAGCAAGACCGACAGCGGGATCGGCAGCACGTAGAGGGG
* * * * * * * *
27022280 GATTGGGCTGATCCTCGACTTATGCATTATGCCTCTCCGATCACCTCTCTGGTCGACTGAGTGCC
130 GACTGGGTTGATCCCCGACTTACGCATTATGCTTCTCCGATCGCCTCTCT-GTCGGCTGAGCGCC
* * ** *
27022345 CGCAAGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATACGGAGT
194 TGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGT
* *
27022410 TCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGCAGTAGGATCA-ATAGCACGCAGGG
259 TCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGCAGCAGGAT-AGACAGCACGCA-GG
* * * *
27022474 GGGACCGAGCCGATCCTCGACTTGCGCATTCTGCCTCTCCAGTTGGCTGAGCGCCCACACGCCCG
322 GGGACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGCCCG
27022539 TTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCTAGA-TCGAAGGT
387 TTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCTAGACT-GAAGGT
* * * * * * * *
27022603 TGTGGCAGCTGGA-T-CAGCA-GC-A-CA-C-AG-A-GCCCGGCTTGCGCATTATGCCTCTTCGG
451 TGTGGCAACGGGACTGCAGCACGCAAGCACCAAGAATCCCCGACTTACGCATTATGCCTATCCGA
* * * *
27022659 CCACCTCAACGCCTGCATGCTCGTTTCGTGGGTTGACTTATGCATAC-AGAGTTCATTCCCAGTG
516 CCACCTCAACACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGA-AGTTCATTCCCAGTC
* ** * * * * *
27022723 TAAGATCGGACTGGATCGAGGGTTGC-ATTAGTAGGATCGACAGCACACAAGGGGGGATCGGGTC
580 TAAGATCAGACCAGACCGAGCGTTACGA-TAGCAGGATCAACAG--CACAAGGGGGGATCGGGTC
*
27022787 GATCCCCGACTTACGCATTCTGCCTCTCC-GA
642 GATCCCCGACTTACGCATTCTACCTCTCCGGA
* * * *
27022818 CAGGCTGAGCGCCTGCATGCTCATTTCGTGGGTTGGCTTAAGCATATAGAGTACATTCCACGTCT
1 C-GACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-AGAGTACATTCCACGTCT
* * *
27022883 AAGCCCCAGTTGGACCGAGGGTTGTGGTAGCAAGACCGGCAGCGGGATCGGCAGCACGTAAAGGG
64 AAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAAGACCGACAGCGGGATCGGCAGCACGTAGAGGG
* *
27022948 GGACTGGGTTAATCCCCGGCTTACGCATTATGCTTCTCCGATCGGCCTCTCCTGTCGGCTGAGCG
129 GGACTGGGTTGATCCCCGACTTACGCATTATGCTTCTCCGATC-GCCTCT-CTGTCGGCTGAGCG
** * * *
27023013 CCTATACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCGTATGGA
192 CCTGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGA
* *
27023078 GTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGCAGGATAGACAGCACGCAGG
257 GTTCATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGCAGCAGGATAGACAGCACGCAGG
* ** * * * * ** *
27023143 GGAATTGAACCGATCC-CTGGGTTACGTATTCTGCCTCTCC-GACCGGCTGAGCGTTCGCACGCT
322 GGGACCGAGCCGATCCTC-GGCTTACGCATTCTGCCTCTCCAG-TCGGCTGAGCGCCCGCACGCC
* ** * * *
27023206 CGTTTCGTGGGTTGACTTTTGCATACGAAG-TACATTCCACGTCTAAGCCCCAG
385 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAG
27023259 TCCAATCGAG
Statistics
Matches: 927, Mismatches: 163, Indels: 52
0.81 0.14 0.05
Matches are distributed among these distances:
666 2 0.00
667 109 0.12
668 6 0.01
669 280 0.30
670 128 0.14
671 4 0.00
672 1 0.00
673 1 0.00
677 1 0.00
679 2 0.00
680 5 0.01
681 1 0.00
682 42 0.05
683 343 0.37
684 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (673 bp):
CGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGAGTACATTCCACGTCTAA
GCCCCAGTCGGACCGAGGGTTGTGGTAGCAAGACCGACAGCGGGATCGGCAGCACGTAGAGGGGG
ACTGGGTTGATCCCCGACTTACGCATTATGCTTCTCCGATCGCCTCTCTGTCGGCTGAGCGCCTG
CACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGAATCGGATCGAGGGTTGCGGCAGCAGGATAGACAGCACGCAGGGGGA
CCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGCCCGTTTC
GTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCTAGACTGAAGGTTGTGG
CAACGGGACTGCAGCACGCAAGCACCAAGAATCCCCGACTTACGCATTATGCCTATCCGACCACC
TCAACACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAGAT
CAGACCAGACCGAGCGTTACGATAGCAGGATCAACAGCACAAGGGGGGATCGGGTCGATCCCCGA
CTTACGCATTCTACCTCTCCGGA
Found at i:27023390 original size:367 final size:366
Alignment explanation
Indices: 27022707--27023624 Score: 986
Period size: 367 Copynumber: 2.5 Consensus size: 366
27022697 TATGCATACA
* * * * * *
27022707 GAGTTCATTCCCAGTGTAAGATCGGACTGGATCGAGGGTTGCATTAGTAGGATCGACAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCA-CAGCAGGATCGACAGCACGC-
* *** *
27022772 AGGGGGGATCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACAGGCTGAGCGCCTGCATG
64 A-GGGGAATCGAACCGATCCCCGACTTACGCATTCTGCCTCTCCGACAGGCTGAGCGCCTGCACG
* * ***
27022837 CTCATTTCGTGGGTTGGCTTAAGCATATAGAGTACATTCCACGTCTAAGCCCCAGTTGGACCGAG
128 CTCATTTCGTGGGTTGACTTAAGCATAGAGAGTACATTCCACGTCTAAGCCCCAGTCCAACCGAG
* * * *
27022902 GGTTGTGGTAGCAAGACCGGCAGCGGGATCGGCAGCACGTAAAGGGGGACTGGGTTAATCCCCGG
193 GGTTATGGTAGCAAGACCGGCAGCGGGATCGACAGCACGCAAAGGGGGACTGGGCTAATCCCCGG
* * * * * * *
27022967 CTTACGCATTATGCTTCTCCGATCGGCCTCTCCTGTCGGCTGAGCGCCTATACGCTCGTTTTGTG
258 CTTACGCAATATGCCTCTCCGATCGACCTCTCCTGACAGCTGAGCGCCCATACGCTCGTTTCGTG
*
27023032 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCGTATG
323 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATG
*
27023076 GAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGCAGGATAGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGC-ACAGCAGGATCGACAGCACGCA
* * ** * * *
27023141 GGGGAATTGAACCGATCCCTGGGTTACGTATTCTGCCTCTCCGACCGGCTGAGCG-TTCGCACGC
65 GGGGAATCGAACCGATCCCCGACTTACGCATTCTGCCTCTCCGACAGGCTGAGCGCCT-GCACGC
* ** *
27023205 TCGTTTCGTGGGTTGACTTTTGCATACGA-AGTACATTCCACGTCTAAGCCCCAGTCCAATCGAG
129 TCATTTCGTGGGTTGACTTAAGCATA-GAGAGTACATTCCACGTCTAAGCCCCAGTCCAACCGAG
* * * * * ** *
27023269 GGTTATGGTAGCAGGACTGGCAGCGGGATCGATAGCATGCAGAGGGGGA-TCGGGCTGGTCCTCG
193 GGTTATGGTAGCAAGACCGGCAGCGGGATCGACAGCACGCAAAGGGGGACT-GGGCTAATCCCCG
* * * * *
27023333 GCTTATGCAATATGCCTCTTCGGTCGACCTCTTC-GACTAGCTGAGCGCCCGTACGCTCGTTTCG
257 GCTTACGCAATATGCCTCTCCGATCGACCTCTCCTGAC-AGCTGAGCGCCCATACGCTCGTTTCG
27023397 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATG
321 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATG
* * * * * * *
27023443 GAGTTCATTCCTAGTCTAAGTTTGAACCAGACCGAGGGTTGCAACAGCCGGATCGATAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGC-ACAGCAGGATCGACAGCACGCA
* * *** * * * * *
27023508 GGGGGACCGGGTCGAT-CCCTAGCTTACACATTTTGCCTCTCCGGTC-GGCTGAGCGCCCGCACG
65 GGGGAATCGAACCGATCCCCGA-CTTACGCATTCTGCCTCTCC-GACAGGCTGAGCGCCTGCACG
* * * * * * *
27023571 CCCTTTTCATGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCA
128 CTCATTTCGTGGGTTGACTTAAGCATAGAGAG-TACATTCCACGTCTAAGCCCCA
27023625 ACCGGACCGT
Statistics
Matches: 453, Mismatches: 86, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
366 7 0.02
367 385 0.85
368 5 0.01
369 55 0.12
370 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (366 bp):
GAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCACAGCAGGATCGACAGCACGCAG
GGGAATCGAACCGATCCCCGACTTACGCATTCTGCCTCTCCGACAGGCTGAGCGCCTGCACGCTC
ATTTCGTGGGTTGACTTAAGCATAGAGAGTACATTCCACGTCTAAGCCCCAGTCCAACCGAGGGT
TATGGTAGCAAGACCGGCAGCGGGATCGACAGCACGCAAAGGGGGACTGGGCTAATCCCCGGCTT
ACGCAATATGCCTCTCCGATCGACCTCTCCTGACAGCTGAGCGCCCATACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATG
Found at i:27023439 original size:26 final size:26
Alignment explanation
Indices: 27023410--27023462 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27023400 GTTGACTTAG
27023410 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
27023436 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27023462 G
1 G
27023463 TTTGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27024660 original size:26 final size:26
Alignment explanation
Indices: 27024631--27024683 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27024621 GTTGACTTAG
*
27024631 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
27024657 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27024683 G
1 G
27024684 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27024881 original size:19 final size:19
Alignment explanation
Indices: 27024857--27024896 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
27024847 ACCGAACCGA
27024857 GGGTTGTGGTAGTAGGACC
1 GGGTTGTGGTAGTAGGACC
27024876 GGGTTGTGGTAGTAGGACC
1 GGGTTGTGGTAGTAGGACC
27024895 GG
1 GG
27024897 CAGCGAGATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.15, C:0.10, G:0.50, T:0.25
Consensus pattern (19 bp):
GGGTTGTGGTAGTAGGACC
Found at i:27025034 original size:26 final size:26
Alignment explanation
Indices: 27025005--27025057 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27024995 GTTGACTTAG
* *
27025005 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
27025031 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
27025057 G
1 G
27025058 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:27025391 original size:26 final size:26
Alignment explanation
Indices: 27025361--27025413 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27025351 GTTGACTTAG
27025361 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27025387 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27025413 G
1 G
27025414 ATCGTATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27027948 original size:26 final size:26
Alignment explanation
Indices: 27027902--27027953 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
27027892 TTGACTTAGC
*
27027902 CATACGGAGTTCATCCCCAGTGTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* *
27027928 CATACAGG-GTTCATTCTCAGTCTAAG
1 CATAC-GGAGTTCATCCCCAGTCTAAG
27027954 ATCGGACTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:27029161 original size:26 final size:26
Alignment explanation
Indices: 27029132--27029181 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
27029122 GACTTGGGCA
*
27029132 TACGGAGTTC-ATCCCCAGTCTAAGCG
1 TACGGAGTTCAAT-CCCAATCTAAGCG
27029158 TACGGAGTTCAATCCCAATCTAAG
1 TACGGAGTTCAATCCCAATCTAAG
27029182 ATCAGACTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (26 bp):
TACGGAGTTCAATCCCAATCTAAGCG
Found at i:27029527 original size:26 final size:26
Alignment explanation
Indices: 27029497--27029549 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27029487 GTTGACTTAG
27029497 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCC-GTCTAA
*
27029523 GCATATGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCCGTCTAA
27029549 G
1 G
27029550 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCCGTCTAA
Found at i:27029869 original size:26 final size:26
Alignment explanation
Indices: 27029840--27029918 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
27029830 GTTGACTTAG
27029840 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27029866 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27029892 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27029918 G
1 G
27029919 ATCAGACCAG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27030298 original size:11 final size:11
Alignment explanation
Indices: 27030252--27030276 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
27030242 ACAGCAGAGT
27030252 ATCGTCGGAGC
1 ATCGTCGGAGC
27030263 ATCGTCGGAGC
1 ATCGTCGGAGC
27030274 ATC
1 ATC
27030277 ATCGCCGGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.20
Consensus pattern (11 bp):
ATCGTCGGAGC
Found at i:27030904 original size:26 final size:26
Alignment explanation
Indices: 27030875--27030927 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27030865 GTTGACATAG
*
27030875 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
27030901 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27030927 G
1 G
27030928 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27031190 original size:159 final size:159
Alignment explanation
Indices: 27030909--27031404 Score: 486
Period size: 159 Copynumber: 3.1 Consensus size: 159
27030899 AAGCATATGA
* * * *
27030909 AGTTCATTCC-TAGTCTAAG-ATCAGATCGGGCCGAGGGTTGTGGCAGCAGGATCGATAGCACG-
1 AGTTCATTCCAT-GTCTAAGCACCAGAT-AGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGT
* * * * * * * *
27030971 -CAGGGGGATCGAGCCGATCCCCAGCTTGCGCATTCTGTCTCTTCGATCGGTTGAGCACCCGCAC
64 AGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCAC
* * *
27031035 GCTCGTTTCAAGTGTTGGCTTAGGCATAGGG
129 GCTCGTTTCATGGGTTGGCTTAGGCATACGG
* * ** * *
27031066 AGCTCATTCCATGTCTAAGCCCCAG-TAGGATTGAGGGTTGTGGCAGCGGGATCGACAGCATGTA
1 AGTTCATTCCATGTCTAAGCACCAGATA-GACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTA
* * *
27031130 GAGGGGGACCGGGTCGATCCCCGGCTTGTGCATTATGCCTCTTCGACCGGCTCAGCACCCGCACG
65 GAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACG
* * ** * **
27031195 CTCGTTTCGTGGGTCGATTTATGCATATAG
130 CTCGTTTCATGGGTTGGCTTAGGCATACGG
* *
27031225 AGTTCATTCACA-ATCTAAG-ATCAGACTAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGT
1 AGTTCATTC-CATGTCTAAGCACCAGA-TAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGT
* *** * * * * *
27031288 AG-GGGGGCACCAGGTCGATCTTTGGCTTGCACATTCTGCCTCTCCGACCGACTGAGCGCCCACA
64 AGAGGGGG-ACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCA
* *
27031352 CGTTCGTTTCATGGGTTAGCTTAGGCATACGG
128 CGCTCGTTTCATGGGTTGGCTTAGGCATACGG
27031384 AGTTCATTCCATGTCTAAGCA
1 AGTTCATTCCATGTCTAAGCA
27031405 TATGGAGCTC
Statistics
Matches: 268, Mismatches: 60, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
157 45 0.17
158 14 0.05
159 204 0.76
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
AGTTCATTCCATGTCTAAGCACCAGATAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAG
AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCACCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATACGG
Found at i:27032413 original size:158 final size:158
Alignment explanation
Indices: 27032125--27032445 Score: 369
Period size: 158 Copynumber: 2.0 Consensus size: 158
27032115 CCTAGTCTAA
* * * *
27032125 GCATATAGAGTTCATTCCCAGACTAAGATCAGATCGGATCGAGGGTTACGGCAGCAAGATCGAAG
1 GCATACAGAGTTCATTCCCAGACTAAGATCAGATCAGATCAAGGGTTACGACAGCAAGATCGAAG
* * * *
27032190 CACACAGACGGGACCGAGCTGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGGATTGAACGCC
66 CACACAGACGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCAGATTGAACGCC
* *
27032255 TGCACGCTCGTTTCGTGGGTTGACTTAG
131 TGCACGCTCGTTTCATGCGTTGACTTAG
** * *
27032283 GCATACAGAGTTCATTCCCA-ATCTAAGATCAGATCAGATCAAGGGTTGTGATAGCAAGATCGGC
1 GCATACAGAGTTCATTCCCAGA-CTAAGATCAGATCAGATCAAGGGTTACGACAGCAAGATC-GA
* * * * * * * ** *
27032347 AGTACGCAGGA-GGGACCGGGCCGATCCTCGGCTTGCGTATTTTACCTCTCCGGTCAG-TTGAGC
64 AGCACACA-GACGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCAGATTGAAC
*
27032410 GCCTGCACGCTCGTTTCATGCGTTGGCTTAG
128 GCCTGCACGCTCGTTTCATGCGTTGACTTAG
27032441 GCATA
1 GCATA
27032446 TGGAGTACAT
Statistics
Matches: 135, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.01
158 90 0.67
159 42 0.31
160 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCCAGACTAAGATCAGATCAGATCAAGGGTTACGACAGCAAGATCGAAG
CACACAGACGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCAGATTGAACGCC
TGCACGCTCGTTTCATGCGTTGACTTAG
Found at i:27033162 original size:210 final size:210
Alignment explanation
Indices: 27032796--27033242 Score: 673
Period size: 210 Copynumber: 2.1 Consensus size: 210
27032786 GTTGGCTTAG
* * * *
27032796 GCATACGGAGTACATTCCACGTCTAAGCCCCAGTTGAATCGAGGGTTATGGCAGCAGGACCGACA
1 GCATACGGAGTACATTCCACATCTAAGCCCCAGTAGAACCAAGGGTTATGGCAGCAGGACCGACA
* * *
27032861 GCGGGATCGGCAGCACGCAGACGGGGATCGGGCTGATCCCCAGCTTGTGCATTATGCCTCTTCGA
66 GCGGGATCGGCAGCACGCAGACAGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTTCGA
* * * * *
27032926 CCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGT
131 CCTACCTCTCCGACCGGCTAAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
*
27032991 TCATCTCCAATCTAA
196 TCATCCCCAATCTAA
* * *
27033006 GCATACGGAATACATTCCACATCTAAGCCCCAGTCAG-ACCAAGGGTTGTGGCAGTAGGACCGAC
1 GCATACGGAGTACATTCCACATCTAAGCCCCAGT-AGAACCAAGGGTTATGGCAGCAGGACCGAC
* *
27033070 AGCGGGATCGGTAGCACGTAGACAGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTTCG
65 AGCGGGATCGGCAGCACGCAGACAGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTTCG
*
27033135 ACCTACCTCTCCGACTGGCTAAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAG
130 ACCTACCTCTCCGACCGGCTAAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAG
*
27033200 TTCATCCCCAGTCTAA
195 TTCATCCCCAATCTAA
*
27033216 GCATACGGAGTTCATTCC-CAGTCTAAG
1 GCATACGGAGTACATTCCACA-TCTAAG
27033243 ATCGAACCGG
Statistics
Matches: 213, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
209 2 0.01
210 210 0.99
211 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (210 bp):
GCATACGGAGTACATTCCACATCTAAGCCCCAGTAGAACCAAGGGTTATGGCAGCAGGACCGACA
GCGGGATCGGCAGCACGCAGACAGGGACCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTTCGA
CCTACCTCTCCGACCGGCTAAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
TCATCCCCAATCTAA
Found at i:27033220 original size:26 final size:26
Alignment explanation
Indices: 27033190--27033242 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27033180 GTTGACTTAG
27033190 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27033216 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27033242 G
1 G
27033243 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27033893 original size:26 final size:26
Alignment explanation
Indices: 27033864--27033916 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27033854 GTTGACTTAG
27033864 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
27033890 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27033916 G
1 G
27033917 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27033965 original size:21 final size:21
Alignment explanation
Indices: 27033923--27033972 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
27033913 TAAGATCAGA
* *
27033923 CCGGATAGAGGGTTGTGATAG
1 CCGGATCGAGGGTTGCGATAG
*
27033944 CCGGATCGAGGGTTGCGGTAG
1 CCGGATCGAGGGTTGCGATAG
*
27033965 CAGGATCG
1 CCGGATCG
27033973 GTAGCGCGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.20, C:0.16, G:0.44, T:0.20
Consensus pattern (21 bp):
CCGGATCGAGGGTTGCGATAG
Found at i:27034278 original size:26 final size:26
Alignment explanation
Indices: 27034242--27034292 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
27034232 TGACTTAGGT
*
27034242 ATACGAAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAATCTAAGC
* *
27034268 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGAAGTTCATCCCCAATCTAAG
27034293 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAATCTAAGC
Found at i:27034791 original size:26 final size:26
Alignment explanation
Indices: 27034741--27034793 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27034731 GTTGGCTTAG
* *
27034741 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
27034767 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
27034793 G
1 G
27034794 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:27035502 original size:26 final size:26
Alignment explanation
Indices: 27035465--27035517 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27035455 GTTGACTTAG
*
27035465 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
27035491 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
27035517 G
1 G
27035518 AGCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:27036352 original size:26 final size:26
Alignment explanation
Indices: 27036322--27036374 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27036312 GTTGGCTTAG
* **
27036322 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
27036348 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
27036374 G
1 G
27036375 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:27038649 original size:26 final size:26
Alignment explanation
Indices: 27038619--27038671 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27038609 GTTGACTTAG
* *
27038619 GCATACGGTGTTCA-TCCCAAGTCTAA
1 GCATACAGAGTTCATTCCCAA-TCTAA
27038645 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
27038671 G
1 G
27038672 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:27039348 original size:26 final size:26
Alignment explanation
Indices: 27039318--27039368 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27039308 TTGACTTAGG
*
27039318 CATACGGAGTTCA-TCCCTAGTCTAAT
1 CATACAGAGTTCATTCCC-AGTCTAAT
27039344 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
27039369 GATCGGATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAT
Found at i:27039671 original size:342 final size:349
Alignment explanation
Indices: 27038975--27040633 Score: 1236
Period size: 368 Copynumber: 4.6 Consensus size: 349
27038965 GTTGACTTAG
* * * * *
27038975 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCAGTAGCAGGGTCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTG-AGGGTGCAGTAGCAGGATCGGTA
* * * ** *
27039040 GCACGCAGGAGGGATCGAGCCGAT-CCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAACGC
65 GCACGCAGGGGGGATCGGGTCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
27039104 CCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCG
129 CCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCG
* *
27039169 GACCGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATTGGTAGCATGCAGAGGGGGATCAGGCTGA
194 GACCGAGGGTTGTGGCAGCAGGACC-G-A-C---------AGCACGCAGAGGGGGATCAGGCTGA
* * * * *
27039234 TCACCGGCTTGCACATTATGCCTC-TCTGGTTGGTCTCTTCGACCGACTGAGCACCCGTACGCTC
247 TCCCCGGCTTGCGCATTATGCCTCTTC-GATCGG--TCTTCGA-CGA-T-AG-ACCCGCACGCTC
* *
27039298 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAA
305 ATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * **
27039343 TCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTGGGGTAGCAGGATCGAG-A
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTGCAGTAGCAGGATCG-GTA
* * *
27039407 CCACGCAGGGGGGATCGGGTCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCT
65 GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
** * * *
27039472 CACACGAC-CGTTTCGTGGTTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGTC
130 CGTACG-CTCATTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAGTC
* * * *
27039535 GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAAGGGGACCAGGCCGATCCCCGGCTTG
193 GGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCAGGCTGATCCCCGGCTTG
*
27039600 CGCATTATGCCTCTTCGATCGG-C-TC-A-G-T-G-CCCGCACGCTCATTTCGTGGGTTGACTTA
258 CGCATTATGCCTCTTCGATCGGTCTTCGACGATAGACCCGCACGCTCATTTCATGGGTTGACTTA
*
27039658 GGCATATGGAGTTCATCCCCAGTCTAA
323 GGCATACGGAGTTCATCCCCAGTCTAA
* * *
27039685 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGGA-TCGAGGGTTGCAGCAGCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACT-GAGGG-TGCAGTAGCAGGATCGGT
* * * * * *
27039749 AGCATGCATGGGGGACTAGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCA
64 AGCACGCAGGGGGGA-TCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * ** *
27039813 CCCGTACGCTCATTTTCATGGGTTGACTTAGGCATACAAAGTACATTCCATGTCTAAGCCCCAGC
128 CCCGTACGCTCA-TTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGT
* * * * * * * * **
27039878 CAGACCGATGGTTGTGGCAGTAGGATCGGCAGCACGTAGAGGGGGATCGGGCTGATTCTTGGCTT
192 CGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCAGGCTGATCCCCGGCTT
** * * * *** * **
27039943 GCGCATTATGCCTCTTCGGCCGGCCTTTCCAGCCGGCTGAGTGTACGCACGCTCGTTTTGTGGGT
257 GCGCATTATGCCTCTTCGATCGGTC-TT-C-GAC-GAT-AG-ACCCGCACGCTCATTTCATGGGT
*
27040008 TGACTTAGGCACACGGAGTTCATCCCCAGTCTAA
316 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * * * * * *
27040042 GCATATGGAGTTCATTCCTAGTCTAAGATCAGATTGGATTGAGGGTTACGGCT-GCAGGAACGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGG-TGCAG-TAGCAGGATCGGT
* * * * * * * * * * *
27040106 AGCATGTAGGGGGGACCAGATCGAT-CCTCGGCTTACGTATTCTGCCTCTTCGACTGGCTAAGCA
64 AGCACGCAGGGGGGATCGGGTCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
** * * * * * ** *
27040170 CCCACATGCTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTACATTTCACATCTAAGCCCCA-AC
128 CCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTC
* * *
27040234 TGAACTGAGGGTTGTGGCAGCAGGACTGGCAGCAGGATCGACAGCACGCAGAGGGGGA-CCGAGC
193 -GGACCGAGGGTTGTGGCAGC---A--GG-A-C-----CGACAGCACGCAGAGGGGGATCAG-GC
* * * * * * * * * * * *
27040298 TAATCTCTGACTTGTGCATTCTGCCTCTTTG-GCTGGCCTCTCTGGCTGGCTGAGCGCCCGCACG
244 TGATCCCCGGCTTGCGCATTATGCCTCTTCGATC-GGTCT-TC-GAC--GAT-AG-ACCCGCACG
* * *
27040362 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAA
302 CTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * * * * * * *
27040410 GCATATGGAGTTCATTCCCAATCTAAGATTGGATTGGA-TCGAGGCTTGCAGCAGGAAGATTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACT-GAGG-GTGCAGTAGCAGGATCGGT
* * * * * * * * * ** *
27040474 AGCACGTAGGAGGGACCGAGCCGATCCTTGGCTTACGCATTCTACCTCTCTGGTCGGCTGAGCTC
64 AGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * * * ** *
27040539 CCATACACTCGTTTCGTGGGTTGGCTTAGGTATAC-GAGTACATTCCACATCTAAGCCCCAGTTG
129 CCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCG
* * *
27040603 AACCGAGGGTTGTGGCATCAAGACCGACAGC
194 GACCGAGGGTTGTGGCAGCAGGACCGACAGC
27040634 TGGATCAGCA
Statistics
Matches: 1053, Mismatches: 187, Indels: 115
0.78 0.14 0.08
Matches are distributed among these distances:
341 1 0.00
342 92 0.09
343 71 0.07
344 120 0.11
345 1 0.00
346 1 0.00
347 1 0.00
348 2 0.00
350 1 0.00
351 2 0.00
352 2 0.00
353 1 0.00
355 56 0.05
356 64 0.06
357 156 0.15
358 1 0.00
359 1 0.00
360 1 0.00
361 3 0.00
362 2 0.00
364 2 0.00
365 1 0.00
366 1 0.00
367 195 0.19
368 273 0.26
369 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (349 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTGCAGTAGCAGGATCGGTAG
CACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGA
CCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGATCAGGCTGATCCCCGGCTTGCGC
ATTATGCCTCTTCGATCGGTCTTCGACGATAGACCCGCACGCTCATTTCATGGGTTGACTTAGGC
ATACGGAGTTCATCCCCAGTCTAA
Found at i:27039695 original size:26 final size:26
Alignment explanation
Indices: 27039659--27039711 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27039649 GTTGACTTAG
*
27039659 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27039685 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27039711 G
1 G
27039712 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27040434 original size:26 final size:26
Alignment explanation
Indices: 27040384--27040436 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27040374 GTTGACTTAG
*
27040384 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
*
27040410 GCATATGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
27040436 G
1 G
27040437 ATTGGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:27044143 original size:26 final size:26
Alignment explanation
Indices: 27044113--27044165 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27044103 GTTGACTTAG
27044113 GCATAC-GCAGTTCATCCCCACTCTAA
1 GCATACAG-AGTTCATCCCCACTCTAA
* *
27044139 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
27044165 G
1 G
27044166 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCACTCTAA
Found at i:27044310 original size:814 final size:814
Alignment explanation
Indices: 27042736--27044322 Score: 2295
Period size: 814 Copynumber: 1.9 Consensus size: 814
27042726 AAACGGCGGC
* * *
27042736 ATTGGGGGTTCCGGTGATTGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGT
1 ATTGGGGGTTCCAGCGATTGGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGT
*
27042801 ACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTTTTAAAGAG
66 ACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAG
*
27042866 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACACTTTTTC
131 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTC
* *
27042931 AAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
196 AAACGGTCACAAAATCTTCTCCACTTCAAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAA
* *
27042996 ATACAAGGATCACCTCTATAAATTTTAGGGAAAAAAATCTTTCTAAAACAATTTAAAAAAATCCC
261 ATACAAGGATCACCTCTACAAATTTTAGGGAAAAAAATCTTTCTAAAACAAGTTAAAAAAATCCC
*
27043061 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCAC
326 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCGTCTTGCCACGAAACTTCAC
* * *
27043126 ATGAACTCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAA
391 ATGAACGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGAAGAAA
** * * *
27043191 GATGAAGATGTGCTTGAACCCACTTACCACCTGTTCGATCCCCGGCTTGCGCATCCTGCCTCTTT
456 GATGAAGATGTGCTTGAACCCACTTACCACCCATTCGATCCCCGACTTCCGCATCCTGCCTCTCT
* ** * * *
27043256 GGTCGGCTGAGCACCCGCACGCTTGTTTCATGGATTGACTTAGGCATACGGAGTTCATCCCTAGT
521 GGTCGGCTGAGCACCCACACGCTCATTTCATGGATTGACTTAGGCATACGCAGTTCATCCCCACT
** * * *
27043321 CTAAGCATATGGAGTTCATTCTCAGTCGAAGATCAGATCGAATCAAGGGTTGCGACAGCAGGATC
586 CTAAGCATACAGAGTTCATTCCCAGTCGAAGATCAGATCGAATCAAGGGTTGAGACAACAGGATC
** * * * *
27043386 GGCAGCACGTAGGGGGGACCGGGCCGAGCCCCGACTTATGCATTCTGTCTCTCCGGTCGGCTGAG
651 AACAGCACGCAGGGGGGACCGGGCCGAGCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAG
** * * * *
27043451 TGCCCGCACACTCATTTTGTTGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAATCCCTAG
716 CACCCGCACACTCATTATGTGGGTTGGCTTAGGCACACAGAGTACATTCCATGTCTAATCCCTAG
27043516 CCGGACCGAGGGTACTGGCAGTAGGACCGGTGAT
781 CCGGACCGAGGGTACTGGCAGTAGGACCGGTGAT
* * *
27043550 ATTGGGGGTTCCAGCGATT-GAGGGGTCGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1 ATTGGGGGTTCCAGCGATTGGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGT
* *
27043614 ACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCTTTAAAGAG
66 ACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAG
* *
27043679 CATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTT
131 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTT
*
27043744 CAAACGGTCACAAAATCTTCTCCACTTCAAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAA
195 CAAACGGTCACAAAATCTTCTCCACTTCAAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAA
* * * *
27043809 AATACAGGGATCACCTCTACCAAA-TTTGGGGACAAAACTCTTTCTAAAA-AAGGTTAAAAAAAT
260 AATACAAGGATCACCTCTA-CAAATTTTAGGGAAAAAAATCTTTCTAAAACAA-GTTAAAAAAAT
** * ** * *
27043872 CTTGAATCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGGTTCGTCTTGCCACGAAGCTT
323 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCGTCTTGCCACGAAACTT
**
27043937 CACATGATGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGAAG
388 CACATGAACGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGAAG
* * **
27044002 AAATATGAAGATGTGCTTGAACCCAGC-TACCACCCATTCGATCCGCGACTTCCGCATTTTGCCT
453 AAAGATGAAGATGTGCTTGAACCCA-CTTACCACCCATTCGATCCCCGACTTCCGCATCCTGCCT
* *
27044066 CTCTGGTCGGCTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGCAGTTCATCCC
517 CTCTGGTCGGCTGAGCACCCACACGCTCATTTCATGGATTGACTTAGGCATACGCAGTTCATCCC
* ** * *
27044131 CACTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGTAG-CAACA
582 CACTCTAAGCATACAGAGTTCATTCCCAGTCGAAGATCAGATCGAATCAAGGGTTG-AGACAACA
* * * * * * * * * *
27044195 GGATCAATAGCATGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGTATTCTGCCTCTTCGATTGG
646 GGATCAACAGCACGCAGGGGGGACCGGGCCGAGCCCCGACTTACGCATTCTGCCTCTCCGATCGG
* * **
27044260 TTGAGCACCCGTACGGTCGA-TATGTGGGTTGGCTTAGGCACACAGAGTACATTCCATGTCTAA
711 CTGAGCACCCGCACACTC-ATTATGTGGGTTGGCTTAGGCACACAGAGTACATTCCATGTCTAA
27044323 GCCCCATTCG
Statistics
Matches: 680, Mismatches: 87, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
813 161 0.24
814 513 0.75
815 6 0.01
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (814 bp):
ATTGGGGGTTCCAGCGATTGGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAG
CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTC
AAACGGTCACAAAATCTTCTCCACTTCAAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAA
ATACAAGGATCACCTCTACAAATTTTAGGGAAAAAAATCTTTCTAAAACAAGTTAAAAAAATCCC
GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCGTCTTGCCACGAAACTTCAC
ATGAACGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGAAGAAA
GATGAAGATGTGCTTGAACCCACTTACCACCCATTCGATCCCCGACTTCCGCATCCTGCCTCTCT
GGTCGGCTGAGCACCCACACGCTCATTTCATGGATTGACTTAGGCATACGCAGTTCATCCCCACT
CTAAGCATACAGAGTTCATTCCCAGTCGAAGATCAGATCGAATCAAGGGTTGAGACAACAGGATC
AACAGCACGCAGGGGGGACCGGGCCGAGCCCCGACTTACGCATTCTGCCTCTCCGATCGGCTGAG
CACCCGCACACTCATTATGTGGGTTGGCTTAGGCACACAGAGTACATTCCATGTCTAATCCCTAG
CCGGACCGAGGGTACTGGCAGTAGGACCGGTGAT
Found at i:27044434 original size:13 final size:13
Alignment explanation
Indices: 27044416--27044441 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27044406 TGCACATTAT
27044416 GCCTCTCCGATCG
1 GCCTCTCCGATCG
27044429 GCCTCTCCGATCG
1 GCCTCTCCGATCG
27044442 ACTGAGCACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.46, G:0.23, T:0.23
Consensus pattern (13 bp):
GCCTCTCCGATCG
Found at i:27044516 original size:26 final size:26
Alignment explanation
Indices: 27044480--27044530 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
27044470 GTTGACTTAG
27044480 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27044506 GCATACGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
27044531 GGATCGGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27044886 original size:26 final size:26
Alignment explanation
Indices: 27044838--27044887 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
27044828 GACTTAGGCA
*
27044838 TACGAAGTTCATCCCCACTCTAAGCG
1 TACGAAGTTCATCCCAACTCTAAGCG
*
27044864 TACGGAGTTCATTCCCAAC-CTAAG
1 TACGAAGTTCA-TCCCAACTCTAAG
27044888 ATTGAACCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 15 0.71
27 6 0.29
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (26 bp):
TACGAAGTTCATCCCAACTCTAAGCG
Found at i:27044906 original size:355 final size:362
Alignment explanation
Indices: 27044073--27045051 Score: 867
Period size: 355 Copynumber: 2.7 Consensus size: 362
27044063 CCTCTCTGGT
* * *
27044073 CGGCTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGCAGTTCATCCCCACTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCACTCTA
* * * *
27044138 AGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGTAGCAACAGGATCAAT
66 AGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTATAGCAACAGGATCAAC
* * * * *** *
27044203 AGCATGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGTATTCTGCCTCTTCGATTGGTTGAGCAC
131 AGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCAC
** ** **
27044268 CCGTACGGTCGATATGTGGGTTGGCTTAGGCACACAGAGTACATTCCATGTCTAAGCCCCATTCG
196 CCCCACACTCGATATGTGGGTTGGCTTAGGCACACAGAGTACATTCCATGTCTAAGCCCCAGCCG
* **
27044333 AACCGAGGGTTATGGCAACAGGACCGGCAACGGGATTGACAACACACAGAAGGGGACCGGGCTGA
261 AACCGAAGGTTATGGCAACAGGACCGG-AAC--GA-TGACAACACACAGAA-GGGACCGGGCCAA
* *
27044398 TCCCAGCTTGCACATTATGCCTCTCCGATCGGCCTCTCCGAT
321 TCCCAGCTTGCACATTATGCCTCTACGATCGGCCTCTCCGAC
* * * * * *
27044440 CGACTGAGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCACTCTA
* * * ** * *
27044505 AGCATACGGAGTTCATTCCTAGTCTAGGATCGGACTAGACCGAGGGTTAT-G-ATAGTAGGATCA
66 AGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTATAGCA-A-CAGGATCA
**
27044568 ACAGCACGCAGGGGGGACCGGG-CTGATCCTTGGCTTGCGCATTCTAG-CTCTCCGACCAGCTGA
129 ACAGCACGCAGGGGGGACCGGGTC-GATCCCCGGCTTGCGCATTCT-GCCTCTCCGACCAGCTGA
* * * ** * *
27044631 GCGCCCCCACACTC-ATTTTGTGGGTTGGCTTAGGCATAGGGGGCT-TATT-CATGTCTAAGCCC
192 GCACCCCCACACTCGA-TATGTGGGTTGGCTTAGGCACACAGAG-TACATTCCATGTCTAAGCCC
* * * * * ** * *
27044693 TAGCCGGACCGAAGGTTGTGGCAGCAGGATC-G-AC-A-G-C-ATGCAGAGAA-GGATCGGGCCA
255 CAGCCGAACCGAAGGTTATGGCAACAGGACCGGAACGATGACAACACACAGAAGGGACCGGGCCA
* * * *
27044751 ATCCCCGGCTTGCGCATTATGCCTCTACGA-CTGGCCTCTTCGGC
320 AT-CCCAGCTTGCACATTATGCCTCTACGATC-GGCCTCTCCGAC
27044795 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCACTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCACTCTA
* ** * ** * * *
27044860 AGCGTACGGAGTTCATTCCCAACCTAAGATTGAACCGGATCGAGGGTTGCAGCAGCAGGATCGAT
66 AGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTATAGCAACAGGATCAAC
* ** * * * * * * * * * *
27044925 GGCATACAGGGGGGATCAGGTCGATTCCCGACTTACACTTTCTGCCTCTCCAACC-GACTCAGCG
131 AGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAG-CTGAGCA
** ** * * * * * *
27044989 CCTGCACGTTC-ATTTCGTGGGTTGGCTTAGGCATACGGAGTACTTTTCACGTCTAAGCCCCAG
195 CCCCCACACTCGATAT-GTGGGTTGGCTTAGGCACACAGAGTACATTCCATGTCTAAGCCCCAG
27045052 TCGGACTATG
Statistics
Matches: 490, Mismatches: 106, Indels: 43
0.77 0.17 0.07
Matches are distributed among these distances:
354 17 0.03
355 213 0.43
356 23 0.05
357 2 0.00
358 1 0.00
360 1 0.00
363 2 0.00
365 2 0.00
366 40 0.08
367 187 0.38
368 2 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (362 bp):
CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCACTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTATAGCAACAGGATCAAC
AGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCAC
CCCCACACTCGATATGTGGGTTGGCTTAGGCACACAGAGTACATTCCATGTCTAAGCCCCAGCCG
AACCGAAGGTTATGGCAACAGGACCGGAACGATGACAACACACAGAAGGGACCGGGCCAATCCCA
GCTTGCACATTATGCCTCTACGATCGGCCTCTCCGAC
Found at i:27046874 original size:25 final size:26
Alignment explanation
Indices: 27046840--27046891 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
27046830 GTTGACTTAG
27046840 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27046865 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27046891 G
1 G
27046892 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27047243 original size:26 final size:26
Alignment explanation
Indices: 27047207--27047259 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27047197 GTTGACTTAG
*
27047207 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27047233 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27047259 G
1 G
27047260 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27047642 original size:355 final size:356
Alignment explanation
Indices: 27046789--27047751 Score: 1145
Period size: 355 Copynumber: 2.7 Consensus size: 356
27046779 TGCACATCCT
* *
27046789 ACCTCTCTGGTCAGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1 ACCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* **
27046854 T-CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGATCGAGGGTTACGACA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGATCGAGGGTTACGGTA
** * * * *
27046918 GCAGGATCAACAGCACGTAGGGGGGACCGAGCCGATCCCCGATTTACGCATTCTGCCTTTCTGGT
130 GCAGGATCAACAGCACACAGGGGGGACCGAGCTGATCCCCGACTTACGCATTCTGCCTCTCCGGT
* * * * *
27046983 TGACTGAGTGGCCAAACATTCGTTTCATGGGTTGGCTTAGGCATAC-AGAGTACATTCCATGTCT
195 TGGCTGAGTGCCCGAACACTCGTTTCGTGGGTTGGCTTAGGCATACGAGAGTACATTCCATGTCT
* *
27047047 AAGCCCCAACCGGACCGAGGGTTGTGGCAGCGAGACCAGCAGCGGGATCAACAGCACGCAGAGGG
260 AAGCCCCAACCAGACCGAGGGTTGTGGCAGCGAGACCAGCAGCGGGATCAACAGCACACAGAGGG
*
27047112 GGATCGAGCTGATCCCTGACTTGCGCATTATG
325 GGAACGAGCTGATCCCTGACTTGCGCATTATG
* * *
27047144 ACTCTCCGACTGACCTCTCCGGCCAACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
1 AC-CT-C-TCTG----GT-CGG----CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* *
27047209 ATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATC-GAATCGGATC
54 ATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-A-CGGATC
* * * * * *
27047273 GAGGGTTACGGTAGCAGGATCGACAGCACACA-GAGAGACCGGGTTGATCCCCGACTTGCGCATT
117 GAGGGTTACGGTAGCAGGATCAACAGCACACAGGGGGGACCGAGCTGATCCCCGACTTACGCATT
* *
27047337 CTGCCTCTCCGGTTGGCTGAGCGCCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATACGA-AGT
182 CTGCCTCTCCGGTTGGCTGAGTGCCCGAACACTCGTTTCGTGGGTTGGCTTAGGCATACGAGAGT
* * * * ** *
27047401 ACATTCCATGTCTAATCCCTAGCCAGACCGAGGGTTGTGGCAG-GCAGGGCTGGCAGCGGGATCG
247 ACATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCG-A-GACCAGCAGCGGGATCA
*** *
27047465 GTGGCACACAGAGGGGGAACG-GACTGATCCAC-GACTTGTGCATTATG
310 ACAGCACACAGAGGGGGAACGAG-CTGATCC-CTGACTTGCGCATTATG
* * * *
27047512 -CCTCTCTGGTCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGATTTAGGTATACGGAGTTCA
1 ACCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
** * *
27047576 TCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACGGGATTGAGGGTTGCGGTA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGATCGAGGGTTACGGTA
* * **
27047641 GCAGGATCAACAGCACACAGGGGGGACCGAGCT-AACCCCGGCTTACGCATTCTGCCTCTCCGAC
130 GCAGGATCAACAGCACACAGGGGGGACCGAGCTGATCCCCGACTTACGCATTCTGCCTCTCCGGT
* * * *
27047705 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
195 TGGCTGAGTGCCCGAACACTCGTTTCGTGGGTTGGCTTAGGCATACG
27047752 GAGGTCATCC
Statistics
Matches: 514, Mismatches: 71, Indels: 46
0.81 0.11 0.07
Matches are distributed among these distances:
354 1 0.00
355 189 0.37
356 12 0.02
357 1 0.00
358 3 0.01
359 3 0.01
360 1 0.00
362 1 0.00
363 2 0.00
364 3 0.01
365 1 0.00
366 3 0.01
367 170 0.33
368 122 0.24
369 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (356 bp):
ACCTCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGATCGAGGGTTACGGTAG
CAGGATCAACAGCACACAGGGGGGACCGAGCTGATCCCCGACTTACGCATTCTGCCTCTCCGGTT
GGCTGAGTGCCCGAACACTCGTTTCGTGGGTTGGCTTAGGCATACGAGAGTACATTCCATGTCTA
AGCCCCAACCAGACCGAGGGTTGTGGCAGCGAGACCAGCAGCGGGATCAACAGCACACAGAGGGG
GAACGAGCTGATCCCTGACTTGCGCATTATG
Found at i:27047955 original size:184 final size:183
Alignment explanation
Indices: 27047490--27048507 Score: 755
Period size: 184 Copynumber: 5.5 Consensus size: 183
27047480 GGAACGGACT
* * * * ** *
27047490 GATCCACGACTTGTGCATTATGCCTCTCTGGTCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * * *
27047555 GATTTAGGTATACGGAGTTCA-TCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCA
66 GACTTAGGCATACGGAGTTCATTCCAC-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
* * * * * * *
27047619 GACGGGATTGAGGGTTGCGGTAGCAGGATCAACAGCACACAGGGGGGACCGAG-C
130 GACCGGATCGAGGGTTGCAGCAGCAGGATCAGCAGCACGCAGAGGGGACCG-GCC
* * * * * *
27047673 TAACCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * *
27047738 GACTTAGGCATACGGAGGTCATCCCTA-GTCTAAGCATACAGAGTTCATTCCCAGTCAAAGATCA
66 GACTTAGGCATACGGAGTTCATTCC-ACGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
27047802 GACCGGATCGAGGTTTGCAGCAGCAGGATCAGCAGAATGTAAAGGGAACCAGGCC
130 GACCGGATCGAGGGTTGCAGCAGCAGGATCAGCAGCACGCAGAGGGGACC-GGCC
* * ** * *
27047857 GATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCAACACGTTCGTTTCATGTGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * ** * ** ** *
27047922 GGCTTAGGCATACGGAGTACATTCCACGTCTAAGC---CCCAG-CCAAACTGAG-CGT-TG-T--
66 GACTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACAGAGTTCATTCCCAGTC-TAAGATCA
* * ** * * ** * *
27047978 G---GCAGC-AGGACTG--GCAGCGGGAT-TGTCAATAGGCAGAGTGGGACCGGGCT
130 GACCGGATCGAGGGTTGCAGCAGCAGGATCAG-CAGCACGCAGAG-GGGACC-GGCC
* * * * * *
27048028 AATCCCCGACTTACACATTATGCCTCTTCATCGGCCTCACCAGTCGGCTGAGCACCCGCACTCTC
1 GATCCCCGACTTGCGCATTCTGCCTC-TC--C-G----A-C---CGGCTGAGCGCCCGCACGCTC
* * *
27048093 GTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCCAGTCTAAGCATACGGAGTTCATCCCC
54 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAC-GTCTAAGCATACAGAGTTCATTCCC
* * * * *
27048157 AGTCTAAGATCAGACCGAATCGAGGGTTGCAGTAGCTGGATCAGTAGCACGCAGAGGGGATCGAG
118 AGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCAGGATCAGCAGCACGCAGAGGGGACCG-G
27048222 CC
182 CC
* * * * * *
27048224 GATCCTCGACTTTCGAATTCTGCCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* *
27048289 GACTTAGGCATACGGAGTTCATCCCTA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
66 GACTTAGGCATACGGAGTTCATTCC-ACGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
** * * * *
27048353 GACCAAATCGAGGGTTGCGGCAGCAGGATCAACAGCACGCAGGGGGGATCGGGCC
130 GACCGGATCGAGGGTTGCAGCAGCAGGATCAGCAGCACGCAGAGGGGA-CCGGCC
* * * * * * ** ** * *
27048408 GATCCCTGGCTTGCGTATTCTTCCTTTTCGACCGGCTGAGCGCCAACACATTCGTTTCGTGTGTT
1 GATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * *
27048473 GGCTTAGGCATACAGAGTACATTCCACGTCTAAGC
66 GACTTAGGCATACGGAGTTCATTCCACGTCTAAGC
27048508 CCTAGCCGAA
Statistics
Matches: 647, Mismatches: 146, Indels: 83
0.74 0.17 0.09
Matches are distributed among these distances:
169 1 0.00
170 16 0.02
171 28 0.04
172 7 0.01
173 3 0.00
174 1 0.00
175 1 0.00
176 1 0.00
178 1 0.00
179 3 0.00
180 6 0.01
181 3 0.00
182 4 0.01
183 199 0.31
184 298 0.46
185 3 0.00
186 3 0.00
187 7 0.01
188 3 0.00
189 1 0.00
191 1 0.00
192 1 0.00
193 1 0.00
194 3 0.00
195 8 0.01
196 27 0.04
197 16 0.02
198 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (183 bp):
GATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
ACCGGATCGAGGGTTGCAGCAGCAGGATCAGCAGCACGCAGAGGGGACCGGCC
Found at i:27048142 original size:26 final size:26
Alignment explanation
Indices: 27048112--27048164 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
27048102 GTTGACTTAG
27048112 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27048138 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27048164 G
1 G
27048165 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27048332 original size:26 final size:26
Alignment explanation
Indices: 27048296--27048348 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27048286 GTTGACTTAG
27048296 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
27048322 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27048348 G
1 G
27048349 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27048344 original size:551 final size:543
Alignment explanation
Indices: 27047157--27048873 Score: 1889
Period size: 551 Copynumber: 3.1 Consensus size: 543
27047147 CTCCGACTGA
* * *
27047157 CCTCTCCGGCCAACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAT
1 CCTCTCCGACCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
27047222 CCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATC-GAATCGGATCGAGGGTTACGGTA
66 CCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGATCGAGGGTTGCGGCA
* * ** * *
27047286 GCAGGATC-GACAGCA-CACAGAGAGACCGGGTTGATCCCCGACTTGCGCATTCTGCCTCTCCGG
130 GCAGGATCAG-CAGCAGCAAAGGGA-ACCGGGCCGAT-CCCGGCTTGCGCATTCTGCCTCTCCGA
** * * * *
27047349 TTGGCTGAGCGCCCGTACAC-TCGTTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCATGTC
192 CCGGCTGAGCG-CC-AACACTTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTACATTCCACGTC
* * * * *
27047413 TAATCCCTAGCCAGACCGAGGGTTGTGGCAGGCAGGGCTGGCAGCGGGATCGGTGGC-ACA-CAG
255 TAAGCCCTAGCCAAACTGAGGGTTGTGGCA-GCAGGACTGGCAGCGGGAT---TGACAACAGCAG
* * ** *
27047476 AGGGGGAACGGACTGATCCACGACTTGTGCATTATGCCTC-TC-T--G-----GTCGGCTAAGCG
316 AGGGGGACCGGGCTGATCCACGACTTACGCATTATGCCTCTTCATCGGCCTCCGTCGGCTGAGCG
* * * **
27047532 CCCGCACGCTCGTTTCATGGGTTGATTTAGGTATACGGAGTTCATCCCCAGTCTAAGCATACAAA
381 CCCGCACTCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
* * * * * *
27047597 GTTCATTCCCAGTCTAAGATCAGACGGGATTGAGGGTTGCGGTAGCAGGATCAACAGCACACAGG
446 GTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGTAGCTGGATCAGCAGCACGCA-G
* * * *
27047662 GGGGACCGAG-CTAACCCCGGCTTACGCATTCTG
510 GGGGACCGAGCCGATCCTCGACTTACGCATTCTG
* *
27047695 CCTCTCCGACCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGGTCAT
1 CCTCTCCGACCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
27047760 CCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCAAAGATCAGACCGGATCGAGGTTTGCAGCAG
66 CCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAG
* * *
27047825 CAGGATCAGCAGAATGTAAAGGGAACCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACC
131 CAGGATCAGCAGCA-GCAAAGGGAACCGGGCCGATCC-CGGCTTGCGCATTCTGCCTCTCCGACC
*
27047890 GGCTGAGCGCCAACACGTTCGTTTCATGTGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAA
194 GGCTGAGCGCCAACAC-TTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAA
* * * * *
27047955 GCCCCAGCCAAACTGAGCGTTGTGGCAGCAGGACTGGCAGCGGGATTGTCAATAGGCAGAGTGGG
258 GCCCTAGCCAAACTGAGGGTTGTGGCAGCAGGACTGGCAGCGGGATTGACAACA-GCAGAGGGGG
* * * *
27048020 ACCGGGCTAATCCCCGACTTACACATTATGCCTCTTCATCGGCCTCACCAGTCGGCTGAGCACCC
322 ACCGGGCTGATCCACGACTTACGCATTATGCCTCTTCATCGGCCT--CC-GTCGGCTGAGCGCCC
27048085 GCACTCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
384 GCACTCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
* * *
27048150 CATCCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCAGTAGCTGGATCAGTAGCACGCAGAGGG
449 CATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGTAGCTGGATCAGCAGCACGCAG-GGG
* * *
27048215 GATCGAGCCGATCCTCGACTTTCGAATTCTG
513 GACCGAGCCGATCCTCGACTTACGCATTCTG
**
27048246 CCTCTCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGACCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
**
27048311 CCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTGCGGCAG
66 CCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAG
* ** * * * * * *
27048376 CAGGATCAACAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGTATTCTTCCTTTTCGACC
131 CAGGATCAGCAGCA-GCAAAGGGAACCGGGCCGATCCC-GGCTTGCGCATTCTGCCTCTCCGACC
*
27048441 GGCTGAGCGCCAACACATTCGTTTCGTGTGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAA
194 GGCTGAGCGCCAACAC-TTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAA
* * ** * * * * *
27048506 GCCCTAGCCGAA-TCGAGGGTTGTGGCAGTAGGACCAGCAGCAGTATCGACAGCACGCAAAGGGG
258 GCCCTAGCCAAACT-GAGGGTTGTGGCAGCAGGACTGGCAGCGGGATTGACAACA-GCAGAGGGG
** * * * * *
27048570 GACCAAGCTGATCCTCGGCTTACGCATT-TGCCTCTCCAATCGGCCTCTTCGGTCGGTTGAGCGT
321 GACCGGGCTGATCCACGACTTACGCATTATGCCTCTTC-ATCGGCCTC--C-GTCGGCTGAGCGC
* *
27048634 CCGCA-TGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTAATCCCCAGTCTAAGCATACGGC
382 CCGCACT-CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
* * * * *
27048698 GTTCATTCCCAGTCTAAGATC-GAATCGAACCAAGGGTTACGGTA-ATAGGATC-GACAGCACGC
446 GTTCATTCCCAGTCTAAGATCAG-ACCGAATCGAGGGTTGCGGTAGCT-GGATCAG-CAGCACGC
* * *
27048760 AGGGGGGCCGAGCCGAT-CTCCGACTTGCGCATTCTA
508 AGGGGGACCGAGCCGATCCT-CGACTTACGCATTCTG
* * * * ** * *
27048796 CCTCTCCGATCGACTGAGTGCCCGTATGCCCGTTTCGTATGTTGGCTTAGGCATAGGGAGTTCAT
1 CCTCTCCGACCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
*
27048861 TCC-ATGTCTAAGC
66 CCCTA-GTCTAAGC
27048874 CCCAGCCAGA
Statistics
Matches: 997, Mismatches: 147, Indels: 58
0.83 0.12 0.05
Matches are distributed among these distances:
535 3 0.00
536 2 0.00
537 4 0.00
538 182 0.18
539 109 0.11
540 6 0.01
542 1 0.00
549 5 0.01
550 238 0.24
551 447 0.45
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (543 bp):
CCTCTCCGACCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
CCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAG
CAGGATCAGCAGCAGCAAAGGGAACCGGGCCGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGG
CTGAGCGCCAACACTTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCC
CTAGCCAAACTGAGGGTTGTGGCAGCAGGACTGGCAGCGGGATTGACAACAGCAGAGGGGGACCG
GGCTGATCCACGACTTACGCATTATGCCTCTTCATCGGCCTCCGTCGGCTGAGCGCCCGCACTCT
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACCGAATCGAGGGTTGCGGTAGCTGGATCAGCAGCACGCAGGGGGACCGAGC
CGATCCTCGACTTACGCATTCTG
Found at i:27048692 original size:26 final size:26
Alignment explanation
Indices: 27048663--27048715 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27048653 GTTGACTTAG
27048663 GCATACGGAGTTAATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* * *
27048689 GCATACGGCGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
27048715 G
1 G
27048716 ATCGAATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:27050438 original size:171 final size:173
Alignment explanation
Indices: 27050045--27050422 Score: 471
Period size: 171 Copynumber: 2.2 Consensus size: 173
27050035 GAGTACCCGC
* * * *
27050045 ACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCATGTCTAAGCCCCAGCCGAATC
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAACCGAATC
* *
27050110 GAGGGTTGTGGCAGCAAGATCGGTAGAGGCATCGACAGCACGCAGAGGGGGATCGAGCTGATCCC
66 GAGGGTTATGGCAGCAAGACCGGTAGAGGCATCGACAGCACGCAGAGGGGGATCGAGCTGATCCC
* ** * *
27050175 TGGCTTGCGTATTATGCGTCTTCGACCGGCTGAGCGCCTGCAT
131 TGGCTTACACATTATGCCTCTCCGACCGGCTGAGCGCCTGCAT
* * * * * *
27050218 --GCTCATTCCATAGGTTGACTTAGGCATACGTAGTACATTCCACGTCTAAGCCCCAACTGGA-C
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAACCGAATC
* * * *
27050280 TGAGGGTTATGGCAGCATGACCGGTAGAGGGATCGGCAGCACGCAGAGGGGGATCGGGCTGATCC
66 -GAGGGTTATGGCAGCAAGACCGGTAGAGGCATCGACAGCACGCAGAGGGGGATCGAGCTGATCC
* * *
27050345 CTGGCTTACACATTATGCCTCTCCGATCC-GTTGAGTGTC-G-AT
130 CTGGCTTACACATTATGCCTCTCCGA-CCGGCTGAGCGCCTGCAT
*
27050387 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
1 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
27050423 TTATCCCCAG
Statistics
Matches: 172, Mismatches: 29, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
169 2 0.01
170 2 0.01
171 166 0.97
172 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (173 bp):
ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAACCGAATC
GAGGGTTATGGCAGCAAGACCGGTAGAGGCATCGACAGCACGCAGAGGGGGATCGAGCTGATCCC
TGGCTTACACATTATGCCTCTCCGACCGGCTGAGCGCCTGCAT
Found at i:27050783 original size:26 final size:26
Alignment explanation
Indices: 27050753--27050805 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27050743 GTTAACTTAG
*
27050753 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
27050779 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27050805 G
1 G
27050806 ACCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27051128 original size:26 final size:26
Alignment explanation
Indices: 27051099--27051151 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27051089 GTTGACTTAG
27051099 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27051125 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27051151 G
1 G
27051152 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27054608 original size:26 final size:26
Alignment explanation
Indices: 27054579--27054631 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27054569 GTTGACTTAG
*
27054579 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
* *
27054605 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
27054631 G
1 G
27054632 ATCGGATTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:27054849 original size:354 final size:350
Alignment explanation
Indices: 27054153--27055189 Score: 1114
Period size: 354 Copynumber: 2.9 Consensus size: 350
27054143 CCACCCGTTC
** ** * * *
27054153 GATCTCCG-GCTTACGCATCCTGCCTCTCTGGTCGGCTAAATGCCCGCAAGCTCGTTTCATGGGT
1 GATC-CCGAGCTTACGCATTATGCCTCTCCAGTCGGCTGAGTGCCCGCAAGCTCGTTTCGTGGGT
* *
27054217 TGACTTAGGCATACAGG-GTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATT
65 TGACTTAGGCATAC-GGAGTTCATCCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATC
** * ** * * * * *
27054281 GGACCGAATCGAGGGTTACAACAGCAGGATCGGTAGCATGCAGGGGGGACCAGGCTGGTCCCTGG
128 GGATAG-ATCGAGGGTTGCGGCAGCAGGATC-GCAGCACGCAGGGGGGACCAGACCGATCCC-GG
* *
27054346 CTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGC
190 CTTGCGCATTCTGCCTCTC-GACCGGCTGAGTGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGC
* **
27054411 ATA-TGAGTACATTCCACGTCTAAGCCCCAACTGGACTGAGGGTTGTGGCAGTAGGACCAGTAGC
254 ATACGGAGTACATTCCACGTCTAAGCCCCAACCAGACTGAGGGTTGTGGCAGTAGGACCAGTAGC
* * *
27054475 GGGATCGACAGCATGCAGAGGGGGATTGAACT
319 GAGATCGACAGCACGCAGAGGGGGATCGAACT
*
27054507 GATCCCGAGCTTACGCATTATGCCTCTCCAGTCGGCTGAGTGCCCGCATGCTCGTTTCGTGGGTT
1 GATCCCGAGCTTACGCATTATGCCTCTCCAGTCGGCTGAGTGCCCGCAAGCTCGTTTCGTGGGTT
*
27054572 GACTTAGGCATACGGAGTTCATCCCCAGCCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGG
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGG
*
27054637 ATTAGATCGAGGGTTGCGGTAGCAGGATCAGCAGCACGCAGGGGGGACCAGACCGATACCCGGCT
130 A-TAGATCGAGGGTTGCGGCAGCAGGATC-GCAGCACGCAGGGGGGACCAGACCGAT-CCCGGCT
* *
27054702 TGCGCATTCTGCCTCGTCGACTGGCTGAGTGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCAT
192 TGCGCATTCTGCCTC-TCGACCGGCTGAGTGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCAT
* * * *
27054767 ACGGAGTACATTCCACGTCTAAGCCCCAGCCAGACTGGGGGTTGTGGGAGTAGGACCGGT-GCGA
256 ACGGAGTACATTCCACGTCTAAGCCCCAACCAGACTGAGGGTTGTGGCAGTAGGACCAGTAGCGA
* **
27054831 GATCGGCAGCACGCAGAGGGGGATCGGGCT
321 GATCGACAGCACGCAGAGGGGGATCGAACT
* * * ** *
27054861 GATCCCCGAG-TTGCGCATTATGCCTATCCGACCGGCCTCTTCGGGCGGTTGAGCGATCGCACGC
1 GAT-CCCGAGCTTACGCATTATGCCTCTCC-A---G-----TC-GGC---TGAGTGCCCGCAAGC
* * *
27054925 TCGTTTCGTGGGTTGACTTAGGCATGCGAAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCC
52 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC-GAGTTCATTCC
* * * * * * *
27054990 CAGTCTAAGATCGAACTAGACCGAGGGTTGTGGCGGTAGGATCGACAGCACGCAGAGGGTGACCG
116 CAGTCTAAGATCGGA-TAGATCGAGGGTTGCGGCAGCAGGATCG-CAGCACGCAG-GGGGGACCA
* * * * *
27055055 GACCGATCTCCGGCTTGCGCATTATGCTTTTTCGACCGGCTCAGTGCCCGCACGCTCGTTTCATG
178 GACCGATC-CCGGCTTGCGCATTCTGC-CTCTCGACCGGCTGAGTGCCCGTACGCTCGTTTCATG
* * * * * ** *
27055120 GGTTGACTTATGCATACGAAGTTCATTCCAAGTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCA
241 GGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCA-ACCAGACTGAGGGTTGTGGCA
*
27055184 GCAGGA
305 GTAGGA
27055190 TCGACAATAC
Statistics
Matches: 578, Mismatches: 79, Indels: 38
0.83 0.11 0.05
Matches are distributed among these distances:
353 5 0.01
354 264 0.46
355 65 0.11
358 1 0.00
363 2 0.00
364 3 0.01
366 1 0.00
367 120 0.21
368 116 0.20
369 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (350 bp):
GATCCCGAGCTTACGCATTATGCCTCTCCAGTCGGCTGAGTGCCCGCAAGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGA
TAGATCGAGGGTTGCGGCAGCAGGATCGCAGCACGCAGGGGGGACCAGACCGATCCCGGCTTGCG
CATTCTGCCTCTCGACCGGCTGAGTGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
GTACATTCCACGTCTAAGCCCCAACCAGACTGAGGGTTGTGGCAGTAGGACCAGTAGCGAGATCG
ACAGCACGCAGAGGGGGATCGAACT
Found at i:27055301 original size:158 final size:159
Alignment explanation
Indices: 27054972--27055315 Score: 415
Period size: 158 Copynumber: 2.2 Consensus size: 159
27054962 CCTAGTCTAA
* * * *
27054972 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTGTGGCGGTAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * **
27055037 GCACGCAGAGGGTGACCGGACCGATCTCCGGCTTGCGCATTATGCTTTTTCGACCGGCTCAGTGC
66 ACACGCAGAGGGGGACCGGACCGATCCCCGACTTGCGCATTATGCCTGTCCGACCGGCTCAGCAC
27055102 CCGCACGCTCGTTTCATGGGTTGACTTAT
131 CCGCACGCTCGTTTCATGGGTTGACTTAT
*
27055131 GCATACGAAGTTCATTCCAAGTCTAAGATC-AGACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGA-ACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * ** * * *
27055195 AATACGTA-AGGGGGATCGGGTCGATCCCCGACTTGCGTATTCTGCCTGTCCGACCGGCTGAGCA
65 AACACGCAGAGGGGGACCGGACCGATCCCCGACTTGCGCATTATGCCTGTCCGACCGGCTCAGCA
* * *
27055259 CCCGTACGCTCGTTTCGTGGGTTGGCTT-T
130 CCCGCACGCTCGTTTCATGGGTTGACTTAT
*
27055288 GGCATACGGAGTTCATTCCATGTCTAAG
1 -GCATACGGAGTTCATTCCAAGTCTAAG
27055316 CATACGGAGC
Statistics
Matches: 156, Mismatches: 27, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
157 1 0.01
158 93 0.60
159 62 0.40
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
ACACGCAGAGGGGGACCGGACCGATCCCCGACTTGCGCATTATGCCTGTCCGACCGGCTCAGCAC
CCGCACGCTCGTTTCATGGGTTGACTTAT
Found at i:27056061 original size:26 final size:26
Alignment explanation
Indices: 27056010--27056062 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27056000 GTTGACTTAG
*
27056010 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATCCTCAGCCTAA
27056036 GCATACGGAGTTCATTCC-CAGCCTAA
1 GCATACGGAGTTCA-TCCTCAGCCTAA
27056062 G
1 G
27056063 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGCCTAA
Found at i:27057000 original size:26 final size:26
Alignment explanation
Indices: 27056971--27057023 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27056961 GTTGACTTAG
27056971 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * **
27056997 GCATGCGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27057023 G
1 G
27057024 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27057078 original size:346 final size:350
Alignment explanation
Indices: 27056297--27057079 Score: 902
Period size: 354 Copynumber: 2.2 Consensus size: 350
27056287 GTTGACTTAG
* * * * * ** *
27056297 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGGATCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATGCGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCAAGGGTTACGACAACAGGATCGACA
* * * * * * * *
27056362 GCACGCAGGAGGGACCAGGTCGATCC-CAGGTTTGTACATTCTGCCTCTCTAGCTGGCTGAGCGC
66 GCACACAGGAGGGATCGGGCCAATCCTCA-GCTTGCACATTCTGCCTCTCCAGCTGGCTGAGCGC
* * * * **
27056426 TCGCACGCTCGTTTCATGGGCTGGCTTCGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCTG
130 CCGCACGCTCGTTTCATGGGCTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAACCA
** * * * *
27056491 GACCAAGGGTTATGGCAACAGGATTGGGAGCGATACCGACAACATGCAGAGGGGACCGGGCTGAT
195 GACCAAGGGTTATGGCAACAGGACCGGCAGCGAGACCGACAACACGCAGAGGGGACCAGGCTGAT
* *
27056556 CCCCAGCTTATGCATTATGCCTCTCTGGTCGGCTAAGCGCCCGCATGCTCTTTTCGTGGGTTGAC
260 CCCCAG--TATGC--TATGCCTCTCCGGCCGGCTAAGCGCCCGCATGCTCTTTTCGTGGGTTGAC
* *
27056621 TTAGGCATACAGAGTTCGTCCCAAGTTTAA
321 TTAGGCATACAGAGTTCATCCCAAGTCTAA
* * * ** * * *
27056651 GCATGTGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGTGGCAGCAGGATCGATA
1 GCATGCGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCAAGGGTTACGACAACAGGATCGACA
* *
27056716 GCACGCAGGAGGGATCGGGCCAATCCTCAGCTTGCACATTCTGCCTCTCC-GGTCGGCTGAGCGC
66 GCACACAGGAGGGATCGGGCCAATCCTCAGCTTGCACATTCTGCCTCTCCAGCT-GGCTGAGCGC
* *
27056780 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAACCA
130 CCGCACGCTCGTTTCATGGGCTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAACCA
* * * * *
27056845 GACCGAGGGTTGTGGCAGCAGGACCGGCAGCGAGATCGACAGCACGCAGAAGGGGACCAGGCTGA
195 GACCAAGGGTTATGGCAACAGGACCGGCAGCGAGACCGACAACACGCAG-AGGGGACCAGGCTGA
* * *
27056910 TCTCC-G-AT-C-A-GTCTCTCCGGCCGGCTGAGCGCCCGCATGCTCGTTTT-GTGGGTTGACTT
259 TCCCCAGTATGCTATGCCTCTCCGGCCGGCTAAGCGCCCGCATGCTC-TTTTCGTGGGTTGACTT
*
27056969 AGGCATACAGAGTTCATCCCCAGTCTAA
323 AGGCATACAGAGTTCATCCCAAGTCTAA
* * *
27056997 GCATGCGGAGTTCATTGCCAGTCTAAGATCGAACCAGA-CTAAGGGTTACGACAATAGGATCGGC
1 GCATGCGGAGTTCATTCCCAGTCTAAGATCGAACCAGATC-AAGGGTTACGACAACAGGATCGAC
27057061 AGCACACA-GAGGGGATCGG
65 AGCACACAGGA-GGGATCGG
27057080 CAGCATGCAG
Statistics
Matches: 370, Mismatches: 53, Indels: 20
0.84 0.12 0.05
Matches are distributed among these distances:
345 3 0.01
346 131 0.35
347 5 0.01
350 1 0.00
351 2 0.01
353 2 0.01
354 206 0.56
355 20 0.05
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.21
Consensus pattern (350 bp):
GCATGCGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCAAGGGTTACGACAACAGGATCGACA
GCACACAGGAGGGATCGGGCCAATCCTCAGCTTGCACATTCTGCCTCTCCAGCTGGCTGAGCGCC
CGCACGCTCGTTTCATGGGCTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAACCAG
ACCAAGGGTTATGGCAACAGGACCGGCAGCGAGACCGACAACACGCAGAGGGGACCAGGCTGATC
CCCAGTATGCTATGCCTCTCCGGCCGGCTAAGCGCCCGCATGCTCTTTTCGTGGGTTGACTTAGG
CATACAGAGTTCATCCCAAGTCTAA
Found at i:27057096 original size:19 final size:20
Alignment explanation
Indices: 27057053--27057098 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
27057043 TACGACAATA
27057053 GGATCGGCAGCACACAGAGG
1 GGATCGGCAGCACACAGAGG
**
27057073 GGATCGGCAGCATGCAGA-G
1 GGATCGGCAGCACACAGAGG
27057092 GGATCGG
1 GGATCGG
27057099 GCCAATCCCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.26, C:0.22, G:0.43, T:0.09
Consensus pattern (20 bp):
GGATCGGCAGCACACAGAGG
Found at i:27057484 original size:158 final size:164
Alignment explanation
Indices: 27057136--27057688 Score: 374
Period size: 158 Copynumber: 3.4 Consensus size: 164
27057126 TCTCCGGTCG
* * * * * ** *
27057136 ACTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCACAT-TCCATGTCTAA
1 ACTGAGAGCCCGCACGCTCGTTTCATCGGTTGACTTAGGCATATGGAGTTCATCCCCA-GTCTAA
* * * * * * *
27057200 GCCCCAGCCAGATCAAGGGTTGT-G--GTAGC-G--GGA-CTGACAGCA-TGCATAGGAGGACCA
65 GACCTAGCCAGACCGAGGGTTGTAGCAG-AGCAGCAGGATC-GACAGCACT-CAGAGGGGGACCG
* * **
27057257 GGTCGATCCCCT-GCTTGCGCATTATGCCTCT-TCGGCTG
127 GGTCGAT-CCCTGGCTTGCACATTATGCCTCTCT-GACCA
* * * * * * *
27057295 GCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATATGGAGTTCATCCCCAGTCTAAG
1 ACTGAGAGCCCGCACGCTCGTTTCATCGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAG
* * * * *
27057360 ATC-AGACCAGACTGAGGG-T-T-GCA-A-CAGCAGGATCGATAGCA-TGTAG-GGGGGACGGGG
66 ACCTAG-CCAGACCGAGGGTTGTAGCAGAGCAGCAGGATCGACAGCACT-CAGAGGGGGACCGGG
*
27057417 TCGATCCCTGGCTTGCACATTCTGCCTCTCTGACCA
129 TCGATCCCTGGCTTGCACATTATGCCTCTCTGACCA
* * * *
27057453 ACTGAGAGCCCGCACGCAT-GTTTCATCGGTTGGCTTAGGCATACGGAGTACAT-TCCATGTCTA
1 ACTGAGAGCCCGCACGC-TCGTTTCATCGGTTGACTTAGGCATATGGAGTTCATCCCCA-GTCTA
* *
27057516 AGCCCTAGCCAGACCGAGGGTTATGGTAGCAGGATTGGCAGCGGGATCGACAGCACTCAGAGGGG
64 AGACCTAGCCAGACCGAGGG-T-T-GTAGCA-GA---GCAGCAGGATCGACAGCACTCAGAGGGG
* * * * **
27057581 GACCGGGTTGATCCTTGGCTTGCGCATTATGCCTCTCTGGCTG
122 GACCGGGTCGATCCCTGGCTTGCACATTATGCCTCTCTGACCA
* * * *
27057624 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCTCAGTCTAAG
1 ACTGAGAGCCCGCACGCTCGTTTCATCGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAG
27057689 CATACGAAGT
Statistics
Matches: 305, Mismatches: 60, Indels: 46
0.74 0.15 0.11
Matches are distributed among these distances:
156 1 0.00
157 11 0.04
158 95 0.31
159 76 0.25
160 4 0.01
161 1 0.00
163 1 0.00
164 3 0.01
166 1 0.00
170 18 0.06
171 92 0.30
172 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (164 bp):
ACTGAGAGCCCGCACGCTCGTTTCATCGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAG
ACCTAGCCAGACCGAGGGTTGTAGCAGAGCAGCAGGATCGACAGCACTCAGAGGGGGACCGGGTC
GATCCCTGGCTTGCACATTATGCCTCTCTGACCA
Found at i:27058010 original size:355 final size:355
Alignment explanation
Indices: 27057375--27058071 Score: 850
Period size: 355 Copynumber: 2.0 Consensus size: 355
27057365 ACCAGACTGA
* ** *
27057375 GGGTTGCAACAGCAGGATCGATAGCATGTAGGGGGGACGGGGTCGATCCCTGGCTTGCACATTCT
1 GGGTTGCAACAGCAGGATCGATAGCACGTAGGGGGGACGGGACCGATCCCTGGCTTACACATTCT
* *
27057440 GCCTCTCTGACCAACTGAGAGCCCGCACGCATGTTTCATCGGTTGGCTTAGGCATACGGAGTACA
66 GCCTCTCCGACCAACTGAGAGCCCGCACGCATGTTTCATCGGTTGGCTTAAGCATACGGAGTACA
* * * * * * ** *
27057505 TTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTATGGTAGCAGGATTGGCAGCGGGATCGACAGC
131 TTCCACGTCTAAGCCCCAGCCAAACCAAAGGTTATGGCAGCAGGACCGGCAGCAGGATCGACAGC
** * * * * * *
27057570 ACTCAGAGGGGGACCGGGTTGATCCTTGGCTTGCGCATTATGCCTCTCTGGCTGGCTGAGCGCCC
196 ACGAAGAGGGGGACCAGGCTGATCCTAGGCTTACGCATTATGCCTCTCCGGCTGGCTCAGCGCCC
* * *
27057635 GCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCTCAGTCTAAGCATACGAAGTT
261 GCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAATCTAAGCATACGAAGTT
27057700 CATTCCCAGTCTAAGATTGGATCGGATCGT
326 CATTCCCAGTCTAAGATTGGATCGGATCGT
* * *
27057730 GGGTTGCGACAGCAGGATCGGTAGCACGTAGGGGGGATC-GGACCGAT-CCTCGGCTTACGCATT
1 GGGTTGCAACAGCAGGATCGATAGCACGTAGGGGGGA-CGGGACCGATCCCT-GGCTTACACATT
** *
27057793 CTGCCTCTCCGACCAGTTGAGCA-CCCGCACGC-TCGTTTCATGGGTTGGCTTAAGCATACGGAG
64 CTGCCTCTCCGACCAACTGAG-AGCCCGCACGCAT-GTTTCATCGGTTGGCTTAAGCATACGGAG
* * *
27057856 TACATTCCACGTCTAAGCCCCAGTCAAACCAAAGGTGT-TGGCAGCAGGACCGGTAGCAGGATTG
127 TACATTCCACGTCTAAGCCCCAGCCAAACCAAAGGT-TATGGCAGCAGGACCGGCAGCAGGATCG
* ** *
27057920 GCAGCACGAAGAGGGGGATTAGGCTGATCGC-AGGCTTACGCATTATGCCTCTCC-GATCGGCTC
191 ACAGCACGAAGAGGGGGACCAGGCTGATC-CTAGGCTTACGCATTATGCCTCTCCGGCT-GGCTC
* * ** *
27057983 AGTGCCCGTACGCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAATCTACGCATA
254 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAATCTAAGCATA
* * **
27058048 TGGAGTTCATTCTTAGTCTAAGAT
319 CGAAGTTCATTCCCAGTCTAAGAT
27058072 CAGACCGGAC
Statistics
Matches: 287, Mismatches: 48, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
354 6 0.02
355 277 0.97
356 4 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (355 bp):
GGGTTGCAACAGCAGGATCGATAGCACGTAGGGGGGACGGGACCGATCCCTGGCTTACACATTCT
GCCTCTCCGACCAACTGAGAGCCCGCACGCATGTTTCATCGGTTGGCTTAAGCATACGGAGTACA
TTCCACGTCTAAGCCCCAGCCAAACCAAAGGTTATGGCAGCAGGACCGGCAGCAGGATCGACAGC
ACGAAGAGGGGGACCAGGCTGATCCTAGGCTTACGCATTATGCCTCTCCGGCTGGCTCAGCGCCC
GCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAATCTAAGCATACGAAGTT
CATTCCCAGTCTAAGATTGGATCGGATCGT
Found at i:27058437 original size:158 final size:159
Alignment explanation
Indices: 27058097--27059227 Score: 491
Period size: 158 Copynumber: 6.9 Consensus size: 159
27058087 GTTACAGCAA
* *
27058097 CACACAGGGGGGACCGGGCTGATCCCCGGCTTATGCATTCTGCCTCTCCGA-TCGGCTGAGCGCC
1 CACACAGGGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACTCGGCTGAGCGCC
* * * ** * ** ** *
27058161 CGCATGC-CTTTTTTGTGGGTTGGCTTAGATATA-GGAGCTCATT-CCATGTCTAAGCCCCAACC
66 CGCATGCTC-ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGATC
*** * ** *
27058223 AGACCGAGGGTTGT-CACAGCGGGACCGACAG
129 AGACCGAGGGTTGTGGTGA-CAGGATTGGCAG
** * ** * * * * * ** * *
27058254 CACGTAGAAGAAGATCAGGCCGATCCTCGGCTTACGCATTATACCTCTTTGACT-GGCTCAGCAC
1 CACACAG-GGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACTCGGCTGAGCGC
* * *
27058318 CCGCATGCTCATTTCGTGGGTTGACTTATGCATGCGGAGTTCATTCCCAGTCTAAGATCGGATCG
65 CCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCA
27058383 GACCGAGGGTTGTGGTGACAGGATTGGCAG
130 GACCGAGGGTTGTGGTGACAGGATTGGCAG
* * * * * * *
27058413 CACACAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCT-CTAATCGGTTGAGCGCT
1 CACACAGGGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACTCGGCTGAGCGCC
* * * * * * * **
27058477 CGTACGTTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACA-TCTAAG-CCCCAGTC
66 CGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-CAGTCTAAGATCGGA-TC
* ** *
27058540 AGACCGAGGGTTGTGGCAGCAAGACTGGCAGCGAGATCAGTAG
129 AGACCGAGGGTTGT----G---G--TGACA--G-GATTGGCAG
* * ** *
27058583 CACACAGAGGGGGATCGGGCTGATCCTCATCTTGCGCATTATGCCTCTCCGACCAACCTCTCCGG
1 CACACAG-GGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCG----A---CT-C-G
* * * * *
27058648 CCGACTGAGCGTCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCT
56 --G-CTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* ** ** ** * * * *
27058713 AAGCATATGGAGTTCATTCTTAGTCTAAGATCAGACCG-GACTGAGGGTTACAGCAA
118 AAG-AT-CGGA--TCAGACCGAGGGT-TG-T--G---GTGAC--AGGATT--GGCAG
* *
27058769 CACACAGGGGGGACCGGGCTGATCCCCGGCTTATGCATTCTGCCTCTCCGA-TCGGCTGAGCGCC
1 CACACAGGGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACTCGGCTGAGCGCC
* * * ** * ** ** *
27058833 CGCATGC-CTTTTTTGTGGGTTGGCTTAGATATA-GGAGCTCATT-CCATGTCTAAGCCCCAACC
66 CGCATGCTC-ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGATC
*** * ** *
27058895 AGACCGAGGGTTGT-CACAGCGGGACCGACAG
129 AGACCGAGGGTTGTGGTGA-CAGGATTGGCAG
** * ** * * * * * * * *
27058926 CACGTAGAAGAAGATCAGGCCGATCCTCGGCTTACGCATTATACCTCTTCGACT-GGCTCAGCAC
1 CACACAG-GGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACTCGGCTGAGCGC
* * *
27058990 CCGCATGCTCATTTCGTGGGTTGACTTATGCATGCGGAGTTCATTCCCAGTCTAAGATCGGATCG
65 CCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCA
27059055 GACCGAGGGTTGTGGTGACAGGATTGGCAG
130 GACCGAGGGTTGTGGTGACAGGATTGGCAG
* * * * * * *
27059085 CACACAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCT-CTAATCGGTTGAGCGCT
1 CACACAGGGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACTCGGCTGAGCGCC
* * * * * * * **
27059149 CGTACGTTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACA-TCTAAG-CCCCAGTC
66 CGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-CAGTCTAAGATCGGA-TC
27059212 AGACCGAGGGTTGTGG
129 AGACCGAGGGTTGTGG
27059228 CAGCAAGACT
Statistics
Matches: 699, Mismatches: 216, Indels: 117
0.68 0.21 0.11
Matches are distributed among these distances:
157 21 0.03
158 323 0.46
159 100 0.14
160 9 0.01
161 1 0.00
162 1 0.00
165 2 0.00
166 1 0.00
167 10 0.01
169 2 0.00
170 16 0.02
171 51 0.07
172 34 0.05
173 1 0.00
175 1 0.00
176 2 0.00
177 1 0.00
179 1 0.00
180 1 0.00
181 2 0.00
183 3 0.00
184 52 0.07
185 39 0.06
186 10 0.01
187 2 0.00
188 11 0.02
189 1 0.00
190 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
CACACAGGGGGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTCCGACTCGGCTGAGCGCC
CGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG
ACCGAGGGTTGTGGTGACAGGATTGGCAG
Found at i:27058966 original size:672 final size:672
Alignment explanation
Indices: 27057696--27059415 Score: 2803
Period size: 672 Copynumber: 2.6 Consensus size: 672
27057686 AAGCATACGA
* * * * ** * * **
27057696 AGTTCATTCCCAGTCTAAGATTGGATCGGATCGTGGGTTG-CGACAGCAGGATCGGTAGCACGTA
1 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGTGA-CAGGATTGGCAGCACACA
* * * * * * ** * * * * * *
27057760 GGGGGGATCGGACCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCAGTTGAGCACCCGCACGC
65 GGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCTAATCGGTTGAGCGCTCGTACGT
* * * * * *
27057825 TCGTTTCATGGGTTGGCTTAAGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCAAACCAAAG
130 TCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCAGACCGAGG
* * * ** * ** *
27057890 G-TGTTGGCAGCAGGACCGGTAGC-AGGATTGGCAGCACGA-AGAGGGGGATTAGGCTGAT-CGC
195 GTTG-TGGCAGCAAGACTGGCAGCGA-GATCAGTAGCAC-ACAGAGGGGGATCGGGCTGATCCTC
* * * * *
27057951 AGGCTTACGCATTATGCCTCTCCG----A----T-CGGCTC-A--GTGC--CCGTACGCTCATTT
257 A-TCTTGCGCATTATGCCTCTCCGACCAACCTCTCCGGC-CGACTGAGCGTCCGTATGCTCGTTT
* * *
27058002 TGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAATCTACGCATATGGAGTTCATTCTTAGTCT
320 CGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCTTAGTCT
27058067 AAGATCAGACCGGACTGAGGGTTACAGCAACACACAGGGGGGACCGGGCTGATCCCCGGCTTATG
385 AAGATCAGACCGGACTGAGGGTTACAGCAACACACAGGGGGGACCGGGCTGATCCCCGGCTTATG
27058132 CATTCTGCCTCTCCGATCGGCTGAGCGCCCGCATGCCTTTTTTGTGGGTTGGCTTAGATATAGGA
450 CATTCTGCCTCTCCGATCGGCTGAGCGCCCGCATGCCTTTTTTGTGGGTTGGCTTAGATATAGGA
27058197 GCTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTCACAGCGGGACCGACAGCACGTAGA
515 GCTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTCACAGCGGGACCGACAGCACGTAGA
*
27058262 AGAAGATCAGGCCGATCCTCGGCTTACGCATTATACCTCTTTGACTGGCTCAGCACCCGCATGCT
580 AGAAGATCAGGCCGATCCTCGGCTTACGCATTATACCTCTTCGACTGGCTCAGCACCCGCATGCT
27058327 CATTTCGTGGGTTGACTTATGCATGCGG
645 CATTTCGTGGGTTGACTTATGCATGCGG
27058355 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGTGACAGGATTGGCAGCACACAG
1 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGTGACAGGATTGGCAGCACACAG
27058420 GGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCTAATCGGTTGAGCGCTCGTACGTT
66 GGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCTAATCGGTTGAGCGCTCGTACGTT
27058485 CATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCAGACCGAGGG
131 CATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCAGACCGAGGG
27058550 TTGTGGCAGCAAGACTGGCAGCGAGATCAGTAGCACACAGAGGGGGATCGGGCTGATCCTCATCT
196 TTGTGGCAGCAAGACTGGCAGCGAGATCAGTAGCACACAGAGGGGGATCGGGCTGATCCTCATCT
27058615 TGCGCATTATGCCTCTCCGACCAACCTCTCCGGCCGACTGAGCGTCCGTATGCTCGTTTCGTGGG
261 TGCGCATTATGCCTCTCCGACCAACCTCTCCGGCCGACTGAGCGTCCGTATGCTCGTTTCGTGGG
27058680 TTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCTTAGTCTAAGATC
326 TTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCTTAGTCTAAGATC
27058745 AGACCGGACTGAGGGTTACAGCAACACACAGGGGGGACCGGGCTGATCCCCGGCTTATGCATTCT
391 AGACCGGACTGAGGGTTACAGCAACACACAGGGGGGACCGGGCTGATCCCCGGCTTATGCATTCT
27058810 GCCTCTCCGATCGGCTGAGCGCCCGCATGCCTTTTTTGTGGGTTGGCTTAGATATAGGAGCTCAT
456 GCCTCTCCGATCGGCTGAGCGCCCGCATGCCTTTTTTGTGGGTTGGCTTAGATATAGGAGCTCAT
27058875 TCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTCACAGCGGGACCGACAGCACGTAGAAGAAGA
521 TCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTCACAGCGGGACCGACAGCACGTAGAAGAAGA
27058940 TCAGGCCGATCCTCGGCTTACGCATTATACCTCTTCGACTGGCTCAGCACCCGCATGCTCATTTC
586 TCAGGCCGATCCTCGGCTTACGCATTATACCTCTTCGACTGGCTCAGCACCCGCATGCTCATTTC
27059005 GTGGGTTGACTTATGCATGCGG
651 GTGGGTTGACTTATGCATGCGG
27059027 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGTGACAGGATTGGCAGCACACAG
1 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGTGACAGGATTGGCAGCACACAG
27059092 GGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCTAATCGGTTGAGCGCTCGTACGTT
66 GGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCTAATCGGTTGAGCGCTCGTACGTT
27059157 CATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCAGACCGAGGG
131 CATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCAGACCGAGGG
27059222 TTGTGGCAGCAAGACTGGCAGCGAGATCAGTAGCACACAGAGGGGGATCGGGCTGATCCTCATCT
196 TTGTGGCAGCAAGACTGGCAGCGAGATCAGTAGCACACAGAGGGGGATCGGGCTGATCCTCATCT
27059287 TGCGCATTATGCCTCTCCGACCAACCTCTCCGGCCGACTGAGCGTCCGTATGCTCGTTTCGTGGG
261 TGCGCATTATGCCTCTCCGACCAACCTCTCCGGCCGACTGAGCGTCCGTATGCTCGTTTCGTGGG
* *
27059352 TTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGAT
326 TTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCTTAGTCTAAGAT
27059416 AGAACCAAAT
Statistics
Matches: 992, Mismatches: 50, Indels: 25
0.93 0.05 0.02
Matches are distributed among these distances:
658 1 0.00
659 224 0.23
660 8 0.01
663 1 0.00
667 2 0.00
668 5 0.01
670 3 0.00
672 748 0.75
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (672 bp):
AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGTGACAGGATTGGCAGCACACAG
GGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCTAATCGGTTGAGCGCTCGTACGTT
CATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCAGACCGAGGG
TTGTGGCAGCAAGACTGGCAGCGAGATCAGTAGCACACAGAGGGGGATCGGGCTGATCCTCATCT
TGCGCATTATGCCTCTCCGACCAACCTCTCCGGCCGACTGAGCGTCCGTATGCTCGTTTCGTGGG
TTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCTTAGTCTAAGATC
AGACCGGACTGAGGGTTACAGCAACACACAGGGGGGACCGGGCTGATCCCCGGCTTATGCATTCT
GCCTCTCCGATCGGCTGAGCGCCCGCATGCCTTTTTTGTGGGTTGGCTTAGATATAGGAGCTCAT
TCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTCACAGCGGGACCGACAGCACGTAGAAGAAGA
TCAGGCCGATCCTCGGCTTACGCATTATACCTCTTCGACTGGCTCAGCACCCGCATGCTCATTTC
GTGGGTTGACTTATGCATGCGG
Found at i:27059390 original size:26 final size:26
Alignment explanation
Indices: 27059361--27059413 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27059351 GTTGACTTAG
*
27059361 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27059387 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27059413 G
1 G
27059414 ATAGAACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27060024 original size:26 final size:26
Alignment explanation
Indices: 27059988--27060040 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27059978 GTTGACTTAG
27059988 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27060014 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27060040 G
1 G
27060041 ATTGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27060282 original size:156 final size:157
Alignment explanation
Indices: 27060055--27060383 Score: 403
Period size: 156 Copynumber: 2.1 Consensus size: 157
27060045 GACCGAATCA
** * * * *
27060055 AGGGTTGCAGCAGCAGGATCGACAGCACGTAGGGGGGATCGAGACGATCCTCAGCTTGCGCATTT
1 AGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGGACCGAGACGATCCCCAGCTTGCACATTC
* * * * *
27060120 TGCCTCTCTGGCCGGTTGAGCGCCCG-CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACA
66 TACCTCTCTGGCCGGTTGAGCGCCCGACACTCGTTTCATGGATTGGCTTAGGCATACGAAGTACA
* *
27060184 TT-CACATCTAAGCCCCAGCCAGACCG
131 TTCCACATCTAAGCCCCAACCAAACCG
* * * * *
27060210 ATGGTTGTGGCAGCAGGATCGATAGCACGTAGAGGGGGACC-AGGATGATCCCCGGTTTGCACAT
1 AGGGTTGTGGCAGCAGGATCGACAGCACGTAG-GGGGGACCGA-GACGATCCCCAGCTTGCACAT
* *
27060274 TCTACCTCTCTGGTCGGTTGAGTGCCCGCACACTCGTTTCATGGATTGGCTTAGGCATACGAAGT
64 TCTACCTCTCTGGCCGGTTGAGCGCCCG-ACACTCGTTTCATGGATTGGCTTAGGCATACGAAGT
* * *
27060339 ACATTCCACGTCTAAGCCCCAATCAAACTG
128 ACATTCCACATCTAAGCCCCAACCAAACCG
27060369 AGGGTTGTGGCAGCA
1 AGGGTTGTGGCAGCA
27060384 AGACCGGTAG
Statistics
Matches: 145, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
155 29 0.20
156 47 0.32
158 36 0.25
159 33 0.23
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
AGGGTTGTGGCAGCAGGATCGACAGCACGTAGGGGGGACCGAGACGATCCCCAGCTTGCACATTC
TACCTCTCTGGCCGGTTGAGCGCCCGACACTCGTTTCATGGATTGGCTTAGGCATACGAAGTACA
TTCCACATCTAAGCCCCAACCAAACCG
Found at i:27060407 original size:159 final size:156
Alignment explanation
Indices: 27060122--27060407 Score: 374
Period size: 159 Copynumber: 1.8 Consensus size: 156
27060112 GCGCATTTTG
* * * *
27060122 CCTCTCTGGCCGGTTGAGCGCCCGCGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTC
1 CCTCTCTGGCCGGTTGAGCGCCCGCACTCGTTTCATGGATTGGCTTAGGCATACGAAGTACATTC
* * * * * * * *
27060187 ACATCTAAGCCCCAGCCAGACCGATGGTTGTGGCAGCAGGATCGATAGCACGTAGAGGGGGACCA
66 ACATCTAAGCCCCAACCAAACCGAGGGTTGTGGCAGCAAGACCGATAGCACGCAAAAGGGGACCA
27060252 GGATGATCCCCGGTTTGCACATTCTA
131 GGATGATCCCCGGTTTGCACATTCTA
* *
27060278 CCTCTCTGGTCGGTTGAGTGCCCGCACACTCGTTTCATGGATTGGCTTAGGCATACGAAGTACAT
1 CCTCTCTGGCCGGTTGAGCGCCCG--CACTCGTTTCATGGATTGGCTTAGGCATACGAAGTACAT
* * * * *
27060343 TCCACGTCTAAGCCCCAATCAAACTGAGGGTTGTGGCAGCAAGACCGGTAGCATGCAAAAGGGGA
64 T-CACATCTAAGCCCCAACCAAACCGAGGGTTGTGGCAGCAAGACCGATAGCACGCAAAAGGGGA
27060408 TCGGGCTGAG
Statistics
Matches: 108, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
156 22 0.20
158 36 0.33
159 50 0.46
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (156 bp):
CCTCTCTGGCCGGTTGAGCGCCCGCACTCGTTTCATGGATTGGCTTAGGCATACGAAGTACATTC
ACATCTAAGCCCCAACCAAACCGAGGGTTGTGGCAGCAAGACCGATAGCACGCAAAAGGGGACCA
GGATGATCCCCGGTTTGCACATTCTA
Found at i:27060480 original size:26 final size:26
Alignment explanation
Indices: 27060450--27060502 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27060440 GTTGACTTAG
* *
27060450 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
27060476 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
27060502 G
1 G
27060503 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:27061471 original size:25 final size:25
Alignment explanation
Indices: 27061440--27061487 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
27061430 AAAAGTTTCA
27061440 AAAATCATGAAAAATAGAAAACGAG
1 AAAATCATGAAAAATAGAAAACGAG
27061465 AAAATCATGAAAAATAGAAAACG
1 AAAATCATGAAAAATAGAAAACG
27061488 GGTCGTCTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.65, C:0.08, G:0.15, T:0.12
Consensus pattern (25 bp):
AAAATCATGAAAAATAGAAAACGAG
Found at i:27061715 original size:26 final size:26
Alignment explanation
Indices: 27061685--27061737 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27061675 GTTGACTTAG
*
27061685 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
* *
27061711 GCATACCGAGTTCATTCCTAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
27061737 G
1 G
27061738 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATCCCCAGTCTAA
Found at i:27062070 original size:26 final size:26
Alignment explanation
Indices: 27062040--27062092 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27062030 GTTGACTTAG
27062040 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCACT-CCCAGTCTAA
*
27062066 GCATATGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
27062092 G
1 G
27062093 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:27062295 original size:353 final size:357
Alignment explanation
Indices: 27061654--27062640 Score: 1148
Period size: 353 Copynumber: 2.7 Consensus size: 357
27061644 TCGGCTGAGC
* * *
27061654 ACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACCG
1 ACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG
* * *
27061719 AGTTCATTCCTAGTCTAAGATC-AGACCGGATCGAGGGTTGCGGTAGTAAGATCGATAGCACGCA
66 AGTTCACTCCCAGTCTAAGATCGA-ACCGGATCGAGGGTTGC-GCAG-AAGATCGATAGCACGCA
** * * *
27061783 GGGGGACCCAAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCACCCGTAC-A
128 GGGGGA-CCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCACCCGTACGC
* * *
27061847 TTCATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGACCAAG
192 TT-GTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGACCGAG
* * * * *
27061912 GGTTGTGGCCGCAGGACTGACAGCGGGATCGACAGCACGCATAGGGGGATCGGGTTGATCCCCGG
256 GGTTGTGGCCGCAGGACAGACAGCGGGATCGACAGCACACAGAGGGGGACCGGGTTGATCCCCGA
** * * *
27061977 CTTGTGCATTATGCC-TCTC-CGA-CCGGTTGAGT-G
321 CTTACGCATTATGCCTTCTCGCCAGCCGCTTCAGTCG
**
27062010 -CCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGG
1 ACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG
* *
27062074 AGTTCACTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCAGCAGCAGATCGACAGCACGCAGG
66 AGTTCACTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGC-GCAGAAGATCGATAGCACGCAGG
* * * *
27062139 GGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTGTCCGGTCGGTTCAGCGCCCGTACGCTTG
130 GGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCACCCGTACGCTTG
* * ** * *
27062204 TTTCGTTGGTTGCCTTAGGCATACGGAGTACATTCCACATCTAAGCCCTAGCCGGACTGAGGGTT
195 TTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
* * *
27062269 GTGGCCGCAGGACCAG-CAGTGGGATCGACAGCACACAGAGGGGGGCCGGGTTGATCCTCGACTT
260 GTGGCCGCAGGA-CAGACAGCGGGATCGACAGCACACAGAGGGGGACCGGGTTGATCCCCGACTT
* *
27062333 ACGCATTATGCCTTTTCGGCCAGCCTCTTCAGTCG
324 ACGCATTATGCCTTCTC-GCCAGCCGCTTCAGTCG
** *
27062368 ACTGAGCACCCGTACTTTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 AC-CCGCA--CG--C--TTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * * *
27062433 CATGCAGAGTTCACTCCCAGTCTAAGATCGAATCGGATCGAGGGTTACGACAGTAGGATCGATAG
59 CATACAGAGTTCACTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCG-CAG-AAGATCGATAG
** * ** * * * *
27062498 CATACAGAAGGGTTCGGG-CTGATCCCCGGCTTGCGCATTCTACCTCTTCGGCCTGTTGAGCCCC
122 CACGCAG-GGGGACCGGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCACC
* ** * *
27062562 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGTCG
185 CGTACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAGCCG
27062626 GACCGAGGGTTGTGG
249 GACCGAGGGTTGTGG
27062641 TAGCGGGACC
Statistics
Matches: 533, Mismatches: 77, Indels: 30
0.83 0.12 0.05
Matches are distributed among these distances:
353 168 0.32
354 28 0.05
355 100 0.19
356 3 0.01
357 7 0.01
358 1 0.00
359 1 0.00
360 3 0.01
362 2 0.00
364 1 0.00
365 1 0.00
366 93 0.17
367 14 0.03
368 110 0.21
369 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (357 bp):
ACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAG
AGTTCACTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGCAGAAGATCGATAGCACGCAGGG
GGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCACCCGTACGCTTGT
TTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTG
TGGCCGCAGGACAGACAGCGGGATCGACAGCACACAGAGGGGGACCGGGTTGATCCCCGACTTAC
GCATTATGCCTTCTCGCCAGCCGCTTCAGTCG
Found at i:27063659 original size:26 final size:26
Alignment explanation
Indices: 27063629--27063679 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
27063619 GTTGACTTAG
27063629 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
** * *
27063655 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAATCTA
27063680 CGATCAGACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:27065821 original size:26 final size:26
Alignment explanation
Indices: 27065791--27065843 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27065781 GTTGACTTAG
27065791 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
* *
27065817 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
27065843 G
1 G
27065844 ATCGAATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:27065991 original size:331 final size:332
Alignment explanation
Indices: 27065441--27066055 Score: 762
Period size: 331 Copynumber: 1.9 Consensus size: 332
27065431 CCACACACTC
*
27065441 GTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTTCCA
1 GTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTTCCA
** * * ** **
27065506 GTCTAAGATCAGACCGGACTGAGGGTTGCAACAGCAAGATCTACAGCATGCAGGGGGTACTGGGT
66 GTCTAAGATCAGACCAAACTGAGGGTTGCAACAGCAAGATCGACAACACACAGGGGGTACTGGAC
* * * *
27065571 CGATCCCCGACTTGCACATTCTGCCTCTCCCGCCGGTTGAGCACCCGTACGTTCGTTTCGTGGGT
131 CGATCCCCGACTTGCACATTCTGCCTCTCCCGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGT
* * *
27065636 TGGCTTAGGTAAACAGAGTACATTCCACATCTAAGCCCCAACCAAA-CTGAGGGTTGTGGCAGTA
196 TGGCTTAAGCAAACAGAGTACATTCCACATCTAAGCCCCAACCAAATC-GAGGGTTGTGGCAGCA
27065700 GGACCGACAGCGGGATCGGT-GCATTATGCCTCTCCGGTCGGCCTCTCCGATTGGCTGAGCGACC
260 GGACCGACAGCGGGATCGGTAGCATTATGCCTCTCCGGTCGGCCTCTCCGATTGGCTGAGCGACC
27065764 GCACGTTT
325 GCACGTTT
**
27065772 GTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCA-TTCCT
1 GTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTTCC-
* *** * *
27065836 AGTCTAAGATC-GAATCAAA-TCGAGGGTTGCGGTAGCAAGATCGGCAACACATAGGAGGG-A-T
65 AGTCTAAGATCAG-ACCAAACT-GAGGGTTGCAACAGCAAGATCGACAACACACAGG-GGGTACT
** * **
27065897 CGGACCGATCCCC-AGCTTGTGCATTCTTCCTCT-CCGACCGGCTGAGTGCCCGCACGCTCGTTT
127 -GGACCGATCCCCGA-CTTGCACATTCTGCCTCTCCCG-CCGGCTGAGCACCCGCACGCTCGTTT
* ** * * * *
27065960 CATGGGTTGGCTTAAGCATATGGAGTACATTCCACGTCTAAGCCCTAGCCGAATCGAGGGTTGTG
189 CATGGGTTGGCTTAAGCAAACAGAGTACATTCCACATCTAAGCCCCAACCAAATCGAGGGTTGTG
*
27066025 GCAGCAGGACCGGCAGCGGGATCGGTAGCAT
254 GCAGCAGGACCGACAGCGGGATCGGTAGCAT
27066056 GCAGAAGGGG
Statistics
Matches: 238, Mismatches: 37, Indels: 17
0.82 0.13 0.06
Matches are distributed among these distances:
330 11 0.05
331 219 0.92
332 8 0.03
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (332 bp):
GTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTTCCA
GTCTAAGATCAGACCAAACTGAGGGTTGCAACAGCAAGATCGACAACACACAGGGGGTACTGGAC
CGATCCCCGACTTGCACATTCTGCCTCTCCCGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGT
TGGCTTAAGCAAACAGAGTACATTCCACATCTAAGCCCCAACCAAATCGAGGGTTGTGGCAGCAG
GACCGACAGCGGGATCGGTAGCATTATGCCTCTCCGGTCGGCCTCTCCGATTGGCTGAGCGACCG
CACGTTT
Found at i:27066188 original size:26 final size:26
Alignment explanation
Indices: 27066159--27066211 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27066149 GTTGACTTAG
*
27066159 GCATACGGAGTTTA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
27066185 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27066211 G
1 G
27066212 ATCGAATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27068454 original size:368 final size:364
Alignment explanation
Indices: 27067317--27069088 Score: 1745
Period size: 368 Copynumber: 4.8 Consensus size: 364
27067307 TGCGCATCCT
* * * * *
27067317 GCCTCTCTGGTCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGATTTAGGCATATGGAGTTCA
1 GCCTCTCCGGTCGGCTGAGCG-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * * **
27067382 TCCCTATTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGATGCAATA
65 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGTA
* ** * ** * *
27067447 GCAGGATCGGCCGGACGCAGGGGGGATCGGGTCGATCCCCGGCTTATGCATTCTGTCTCTCGGGC
130 GCAAGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGC
* * ** * * * ** *
27067512 CGGTTGAGTGCCTGCATGCTTGTTTCTTGGGTTGGCTTAGGCATATGGAGTGTATTCCACGTCTA
195 CGGCTAAGTGCCCACAT-CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTA
* * * *
27067577 A-CCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACTGACAGCGAGAAT-GATAGCACACAGAGGG
259 AGCCCCAGTC-GACCGAGGGTTGTGGCAGCAGGACTGACAGCG-GGATCGACAGCACACAGA-GG
* ** **
27067640 GGACCGGGCTGATCCCTGACTTACGCATTATGCCTCTTCGATCG
321 GGATCGGGCTGATCCCCAACTTGTGCATTATGCCTCTTCGATCG
* * * * *
27067684 GCCTCTCCGGCCGGCTGAGCGCACGCACGGTCATTTTATGGGTTGACTTAGGCATACAGAGTTCA
1 GCCTCTCCGGTCGGCTGAGCGC-CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
27067749 TCCCCAGTCCAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTACGGCA
65 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGTA
* * * * * *
27067814 GCAAGATCGGTAGCACGCA-GGGGGACCAGGTCAATCCCCGGCTGGCGCATTCTGCCTTTTCGGC
130 GCAAGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGC
** * * *
27067878 C-G-TTTGTGCACCCGCAGTCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTACATTCCATGTC
195 CGGCTAAGTG--CCCACA-TCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTC
** * * * *
27067941 TAAGCCCCAGTCGAACTAAGGTTTGTGGCAGCAAGA-TCGACAGCGGGATTGACAGCACAAAGAG
257 TAAGCCCCAGTCG-ACCGAGGGTTGTGGCAGCAGGACT-GACAGCGGGATCGACAGCACACAGAG
* * *
27068005 AGGGATCGGGTTGATCCCCAGCTTGTGCATTATGCCTGTTCGATCG
320 -GGGATCGGGCTGATCCCCAACTTGTGCATTATGCCTCTTCGATCG
* * * * * *
27068051 GCCTCTCTGGTCGGTTGAGCCCCCGTACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTTA
1 GCCTCTCCGGTCGGCTGAG-CGCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
** * *
27068116 TCCCCAGTCTAAGCATACGGAGTTCATTTTCAGCCTAAGATCAGA-TCGGATCGAGGGTTGCGAT
65 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGATCGAGGGTTGCGGT
* * *
27068180 AGCAGGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCCGG
129 AGCAAGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG
** * * **
27068245 TTGGCTAAGTGCCCGTACAT-TCATTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACATC
194 CCGGCTAAGTGCCC--ACATCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTC
* * * * * *
27068309 TAAGCCCTAGTCAGACCGAGGGTTATGGCAGTAGGACTGGCAGTGGGATCGATAGCACACAGAGG
257 TAAGCCCCAGTC-GACCGAGGGTTGTGGCAGCAGGACTGACAGCGGGATCGACAGCACACAGAGG
* * *
27068374 GAGATCGGGCTGATCCCCAACTTGTGCAATATGCCTCTCTGGCT-G
321 G-GATCGGGCTGATCCCCAACTTGTGCATTATGCCTCT-TCGATCG
* * * * * *
27068419 ACCTCTCCAGTCAGCTGAGTGCCTGCACACTCGTTTCATGGGTTGACTTAGGCATACCGAGTTCA
1 GCCTCTCCGGTCGGCTGAGCGCC-GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
27068484 TCCCCAGTCTAAGCATATGGAGTTCATTGCCAGTCTAAGATCAGAAC-GGATCAAGGGTTGTGGC
65 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGGATCGAGGGTTGCGGT
* ** * * * *
27068548 AGCAAAATCGACAGCATGCAGGGGGGATCGGGTCGATCCCCGACTTGGGCATTCTACCTCTCCGG
129 AGCAAGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG
* * *** * * * * *
27068613 CTGGTTGAACACCCCCACA-CTCGTTTCATGGGTTGGCTTTGGTATACGGAGTACAATCAATGTC
194 CCGGCT-AA-GTGCCCACATCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTC
* * * * * * *
27068677 TAAGCCGCAGTCGAACAGAGGGTTGTGGTAGCAGGACCGACAGCGGGAACGGCAGCACACAAAGG
257 TAAGCCCCAGTCG-ACCGAGGGTTGTGGCAGCAGGACTGACAGCGGGATCGACAGCACACAGAGG
* * * * *
27068742 GCGATCGGGCTGATCCCTAGCTTGTGCATTATGCCTCTCCGGTCT
321 G-GATCGGGCTGATCCCCAACTTGTGCATTATGCCTCTTCGATCG
* * * *
27068787 GCCTCTCCGGCCGACTGAGCATCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGGTCGGCTGAGC-GCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* *
27068852 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGGGGGTTACGGTA
65 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGTA
* * * * * **
27068917 GCAAGATCGATAGCACTG-AGAGGGGA-CTGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCTT
130 GCAAGATCGGTAGCAC-GCAGGGGGGATC-GGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* * * * * *
27068980 GTCGGCTGAGTACCCACACTCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGT
193 GCCGGCTAAGTGCCCACA-TCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCATGT
* * *
27069044 CTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGTAGGACTGACAGC
256 CTAAGCCCCAGTC-GACCGAGGGTTGTGGCAGCAGGACTGACAGC
27069089 ATGCAGAGGG
Statistics
Matches: 1135, Mismatches: 234, Indels: 71
0.79 0.16 0.05
Matches are distributed among these distances:
364 4 0.00
365 1 0.00
366 95 0.08
367 337 0.30
368 674 0.59
369 15 0.01
370 9 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (364 bp):
GCCTCTCCGGTCGGCTGAGCGCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGTAG
CAAGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCC
GGCTAAGTGCCCACATCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAG
CCCCAGTCGACCGAGGGTTGTGGCAGCAGGACTGACAGCGGGATCGACAGCACACAGAGGGGATC
GGGCTGATCCCCAACTTGTGCATTATGCCTCTTCGATCG
Found at i:27068500 original size:26 final size:26
Alignment explanation
Indices: 27068470--27068522 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27068460 GTTGACTTAG
27068470 GCATACCGAGTTCATCCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
** **
27068496 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
27068522 G
1 G
27068523 ATCAGAACGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATCCCCAGTCTAA
Found at i:27068848 original size:736 final size:734
Alignment explanation
Indices: 27067315--27069088 Score: 2086
Period size: 736 Copynumber: 2.4 Consensus size: 734
27067305 CTTGCGCATC
* * * *
27067315 CTGCCTCTCTGGTCGGCTGAGCGCCCGCACG-TTCGTTTCGTGGGTTGATTTAGGCATATGGAGT
1 CTGCCTCTCTGGTCGGCTGAGCACCCGCACGCTT-GTTTCATGGGTTGACTTAGGCATACGGAGT
* * * * *
27067379 TCATCCCTATTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGATGCA
65 TCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCG
** * * ** * *
27067444 ATAGCAGGATCGGCCGGACGCAGGGGGGATCGGGTCGATCCCCGGCTTATGCATTCTGTCTCTCG
130 ATAGCAGGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCC
* * * * * * *
27067509 GGCCGGTTGAGTG-CCTGCATGCTTGTTTCTTGGGTTGGCTTAGGCATATGGAGTGTATTCCACG
195 GGTCGGCTGAGTGCCCTACAT-CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT-CATTCCACG
* *
27067573 TCTAA-CCCCAGCCAGACCGAGGGTTGTGGTAGCAGGACTGACAGCGAGAATGATAGCACACAGA
258 TCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTAGGACTGACAGCGAGAATGATAGCACACAGA
* ** * * * *
27067637 GGGGGACCGGGCTGATCCCTGACTTACGCATTATGCCTCTTCGATCGGCCTCTCCGGCCGGCTGA
323 GGGAGACCGGGCTGATCCCCAACTTACGCAATATGCCTCTTCGATCGACCTCTCCAGCCAGCTGA
** *
27067702 GCGCACGCACGGTCATTTTATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCCAAGCATAT
388 GCGCACGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCCAAGCATAT
* * **
27067767 GGAGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTACGGCAGCAAGATCGGTAGCACGC
453 GGAGTTCATTCCCAGTCTAAGATCAAACTGGATCAAGGGTTACGGCAGCAAAATCGACAGCACGC
* * * * * ** * **
27067832 AGGGGGACCAGGTCAATCCCCGGCTGGCGCATTCTGCCTTTTCGGCCGTTTGTGCACCCGCAGTC
518 AGGGGGACCAGGTCAATCCCCGACTGGCGCATTCTACCTCTCCGGCCGGTTGAACACCCCCACAC
** * *
27067897 TCGTTTTGTCGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGAACTAAGG
583 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTACAATCAATGTCTAAGCCCCAGTCGAACTAAGG
* * ** *
27067962 TTTGTGGCAGCAAGATCGACAGCGGGATTGACAGCACAAAGAGAGGGATCGGGTTGATCCCCAGC
648 GTTGTGGCAGCAAGACCGACAGCGGGAACGACAGCACAAAGAGAGGGATCGGGCTGATCCCCAGC
* *
27068027 TTGTGCATTATGCCTGTTCGAT
713 TTGTGCATTATGCCTCTCCGAT
* * * * * *
27068049 CGGCCTCTCTGGTCGGTTGAGCCCCCGTACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTT
1 CTGCCTCTCTGGTCGGCTGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTT
* ** *
27068114 TATCCCCAGTCTAAGCATACGGAGTTCATTTTCAGCCTAAGATCAGA-TCGGATCGAGGGTTGCG
66 CATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGATCGAGGGTTGCG
*
27068178 ATAGCAGGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCC
130 ATAGCAGGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCC
* * * * *
27068243 GGTTGGCTAAGTGCCCGTACAT-TCATTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACA
195 GGTCGGCTGAGTGCCC-TACATCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT-CATTCCACG
* * * * * *
27068307 TCTAAGCCCTAGTCAGACCGAGGGTTATGGCAGTAGGACTGGCAGTG-GGATCGATAGCACACAG
258 TCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTAGGACTGACAGCGAGAAT-GATAGCACACAG
* ** * * *
27068371 AGGGAGATCGGGCTGATCCCCAACTTGTGCAATATGCCTCTCTGGCT-GACCTCTCCAGTCAGCT
322 AGGGAGACCGGGCTGATCCCCAACTTACGCAATATGCCTCT-TCGATCGACCTCTCCAGCCAGCT
* * * *
27068435 GAGTGC-CTGCACACTCGTTTCATGGGTTGACTTAGGCATACCGAGTTCATCCCCAGTCTAAGCA
386 GAGCGCAC-GCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCCAAGCA
* **
27068499 TATGGAGTTCATTGCCAGTCTAAGATCAGAAC-GGATCAAGGGTTGTGGCAGCAAAATCGACAGC
450 TATGGAGTTCATTCCCAGTCTAAGATCA-AACTGGATCAAGGGTTACGGCAGCAAAATCGACAGC
* * * * *
27068563 ATGCAGGGGGGATCGGGTCGATCCCCGACTTGG-GCATTCTACCTCTCCGGCTGGTTGAACACCC
514 ACGCA-GGGGGACCAGGTCAATCCCCGAC-TGGCGCATTCTACCTCTCCGGCCGGTTGAACACCC
* * * *
27068627 CCACACTCGTTTCATGGGTTGGCTTTGGTATACGGAGTACAATCAATGTCTAAGCCGCAGTCGAA
577 CCACACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTACAATCAATGTCTAAGCCCCAGTCGAA
* * *
27068692 C-AGAGGGTTGTGGTAGCAGGACCGACAGCGGGAACGGCAGCACACAA-AG-GGCGATCGGGCTG
642 CTA-AGGGTTGTGGCAGCAAGACCGACAGCGGGAACGACAGCACA-AAGAGAGG-GATCGGGCTG
* *
27068754 ATCCCTAGCTTGTGCATTATGCCTCTCCGGT
704 ATCCCCAGCTTGTGCATTATGCCTCTCCGAT
* * * *
27068785 CTGCCTCTCCGGCCGACTGAGCATCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTT
1 CTGCCTCTCTGGTCGGCTGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTT
* * *
27068850 CATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGGGGGTTACGG
66 CATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGA
* * * * *
27068915 TAGCAAGATCGATAGCACTG-AGAGGGGA-CTGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTC
131 TAGCAGGATCGGTAGCAC-GCAGGGGGGATC-GGGTCGATCCCTGGCTTGCGCATTCTGCCTCTC
** * * * * *
27068978 TTGTCGGCTGAGTACCC-ACACTCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCAT
194 CGGTCGGCTGAGTGCCCTACA-TCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TCATTCCAC
* *
27069042 GTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGTAGGACTGACAGC
257 GTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTAGGACTGACAGC
27069089 ATGCAGAGGG
Statistics
Matches: 868, Mismatches: 152, Indels: 38
0.82 0.14 0.04
Matches are distributed among these distances:
733 1 0.00
734 218 0.25
735 213 0.25
736 428 0.49
737 8 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (734 bp):
CTGCCTCTCTGGTCGGCTGAGCACCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTT
CATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGA
TAGCAGGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCG
GTCGGCTGAGTGCCCTACATCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTCATTCCACGTCT
AAGCCCCAGCCAGACCGAGGGTTGTGGCAGTAGGACTGACAGCGAGAATGATAGCACACAGAGGG
AGACCGGGCTGATCCCCAACTTACGCAATATGCCTCTTCGATCGACCTCTCCAGCCAGCTGAGCG
CACGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCCAAGCATATGGA
GTTCATTCCCAGTCTAAGATCAAACTGGATCAAGGGTTACGGCAGCAAAATCGACAGCACGCAGG
GGGACCAGGTCAATCCCCGACTGGCGCATTCTACCTCTCCGGCCGGTTGAACACCCCCACACTCG
TTTCATCGGTTGGCTTAGGCATACGGAGTACAATCAATGTCTAAGCCCCAGTCGAACTAAGGGTT
GTGGCAGCAAGACCGACAGCGGGAACGACAGCACAAAGAGAGGGATCGGGCTGATCCCCAGCTTG
TGCATTATGCCTCTCCGAT
Found at i:27068868 original size:26 final size:26
Alignment explanation
Indices: 27068838--27068890 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27068828 GTTGACTTAG
27068838 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27068864 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27068890 G
1 G
27068891 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27069174 original size:159 final size:157
Alignment explanation
Indices: 27069002--27069365 Score: 382
Period size: 159 Copynumber: 2.3 Consensus size: 157
27068992 CCCACACTCC
* ** * * *
27069002 CGTTTTGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-CCGGATCGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGG
* * * *
27069066 GTTGTGGCAGTAGGA-CTGACAGCATGCAGAGGGG-GACCGGG-CAGATCCCCGGTTTGCACATT
66 GTTGTGGCAGCAAGATC-GACAG--TACAGAGGGGAGACCGGGTC-GATCCCCGGCTTGCACATT
* * * * *
27069128 ATGCCCTTTCGATCGGCTCCGCG-CCCACATGCT
127 AT-ACCTCTCGACCGACTCAGCGTCCCAC--GCT
* * * *
27069161 CGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAG
1 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAG
* * *
27069224 GGTTGTGGCAGCAAGATCGACAGTACATAGGGGAGACCGGGTCGATCCCCGGCTTGCGCATTCTA
65 GGTTGTGGCAGCAAGATCGACAGTACAGAGGGGAGACCGGGTCGATCCCCGGCTTGCACATTATA
* * *
27069289 CCTCTCGGCCGACTGAGCGTCGCACGCT
130 CCTCTCGACCGACTCAGCGTCCCACGCT
27069317 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
1 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
27069366 TACGGAGCTC
Statistics
Matches: 170, Mismatches: 27, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
155 3 0.02
156 44 0.26
157 22 0.13
158 32 0.19
159 65 0.38
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGG
GTTGTGGCAGCAAGATCGACAGTACAGAGGGGAGACCGGGTCGATCCCCGGCTTGCACATTATAC
CTCTCGACCGACTCAGCGTCCCACGCT
Found at i:27070090 original size:26 final size:26
Alignment explanation
Indices: 27070060--27070112 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27070050 GTTGACTTAG
27070060 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
27070086 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27070112 G
1 G
27070113 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27071076 original size:159 final size:159
Alignment explanation
Indices: 27070774--27071276 Score: 522
Period size: 159 Copynumber: 3.2 Consensus size: 159
27070764 CCCAATCTAA
* *** * * *
27070774 GCATATGGAGTTCATTCCCA-GTCTAAG-ATTGGATCGGACCGAGGGTTGTGACAGCAAGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGG
* * * * * *
27070837 TAGCACGTAGGGGGGACCGGGCCGATCCCC-AGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGT
65 CAGCACGCAGGGGGGACCGGGTCGATCCCCGA-CTTGCGCATTCTGCCTCTTCGGTCGGCTGAGC
*
27070901 GCCCGCATGCTCGTTTCATGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
27070932 GCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGCGGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGC
* *
27070996 AGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCTTCGG-CTGGCTCAGC
66 AGCACGCAG-GGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTC-GGCTGAGC
* * *
27071060 GCCCGCACACTCGTTTCATGGGTTGACTTAT
129 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
27071091 GCATACGGTGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGG-TGGGAGCAGCAGGATCG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTG-GCAGCAGGATCG
* * * * * * * * *
27071153 ACAGCACACAGGGGGGACCGGGTCGATCCCTGGCTTGCACATTCTACCTCTCCGATCGGTTGAGC
64 GCAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGCTGAGC
* *
27071218 ACCACG--CGCTCGTTTCGTGGGTTGGCTTAG
129 GCC-CGCACGCTCGTTTCATGGGTTGGCTTAG
*
27071248 GCATACAGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
27071277 TACGGAGCTA
Statistics
Matches: 284, Mismatches: 49, Indels: 24
0.80 0.14 0.07
Matches are distributed among these distances:
156 3 0.01
157 44 0.15
158 107 0.38
159 126 0.44
160 4 0.01
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGC
AGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGC
CCGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:27071993 original size:26 final size:26
Alignment explanation
Indices: 27071957--27072009 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27071947 GTTGACTTAG
27071957 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
**
27071983 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
27072009 G
1 G
27072010 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:27072351 original size:30 final size:30
Alignment explanation
Indices: 27072315--27072376 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
27072305 CGTTGCATGG
27072315 GTTGACTTAGGCATACGGAGTTCATCCCCA
1 GTTGACTTAGGCATACGGAGTTCATCCCCA
* *
27072345 GTTGACTTAGGCATACGGAGTTTATTCCCA
1 GTTGACTTAGGCATACGGAGTTCATCCCCA
27072375 GT
1 GT
27072377 CTAAGATCGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.31
Consensus pattern (30 bp):
GTTGACTTAGGCATACGGAGTTCATCCCCA
Found at i:27072737 original size:26 final size:26
Alignment explanation
Indices: 27072697--27072749 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27072687 GTTGACTTAG
*
27072697 GCATACGGAGTTCATCTCC-AGTCTAA
1 GCATACGGAGCTCAT-TCCTAGTCTAA
27072723 GCATACGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCTAGTCTAA
27072749 G
1 G
27072750 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCTAGTCTAA
Found at i:27072908 original size:368 final size:366
Alignment explanation
Indices: 27071906--27072929 Score: 1060
Period size: 372 Copynumber: 2.8 Consensus size: 366
27071896 TGCGCATCCT
* *
27071906 GCCTCTCTGGTCGGCTGAGCGCTCGCACGCACGTTTCGTGTGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCTGGTCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
27071971 ACCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCA
* * * * * *
27072036 GCAGGATCAAAAGCATGTAAGTGGGATCGGACCGATCCCCGGCTTACGT-ATTCTGCCTCTTCGA
131 GCAGGATCGACAGCATGTAAGGGGGATCGGGCCGATCCTCGGCTT--GTCATTCTGCCTCTCCGA
* ** * * ** *
27072100 TCGGTTGAGCGCCAGCACGCTCATTTTTTGGGTTGGCTTAGGCAAACGGAGTACATTCCACATCT
194 CCGACTGAGAGCC-GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCT
* * *** * * *
27072165 AAGCCCCAGTCGGACAGAGGGTTGTGGCAGCAGGACTGGCAGCGGGATCGACAGCACGCAGAGGG
258 AAGCCCCAGCCGGACAGAGGGTTGTCGCAGCAGGACCAACAGCGAGATAGACAGCACGCAAAGGG
* * * *
27072230 AGACCAGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGATCG
323 AGACCAGGCTGATCCCCAGCTTGCACATTACGCCTCTCCGATCG
* * * * * ** * *
27072274 GCCTCTCTGGCCCGTTGAGTGCTCGTACAATCGTTGCATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCTGGTCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
27072339 TCCCCAGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGC
66 TCCCCAG-T--C-TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGC
** * * * *
27072404 GATAGTAGGATCGACAGCATGTAGGGGGGATCGGGTCGATCCTCGGCTTACG-CATTCTGTCTCT
127 GGCAGCAGGATCGACAGCATGTAAGGGGGATCGGGCCGATCCTCGGCTT--GTCATTCTGCCTCT
* * * * * * *
27072468 CTGGCCGACTGAGCACCCGCATGCTCGTTTCGTGGCTTTGCTTAGGCATATGGAGTACATTCCAC
190 CCGACCGACTGAG-AGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCAC
* * * *
27072533 GTCTAAGCCCCAGCCGGATC-GAGGGTTGTCGCAGTAGGACCAATAGCGAGATTAG-CAGCACGT
254 ATCTAAGCCCCAGCCGGA-CAGAGGGTTGTCGCAGCAGGACCAACAGCGAGA-TAGACAGCACGC
* * *
27072596 AAAGGGGGATCAGGCTGATCCTCAGCTTGCACATTACGCCTCTCCGA-CTG
317 AAAGGGAGACCAGGCTGATCCCCAGCTTGCACATTACGCCTCTCCGATC-G
*
27072646 GCCTCTCCGGTCGGCTGAGCGAC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
1 GCCTCTCTGGTCGGCTGAGCG-CTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * *
27072710 ATCTCCAGTCTAAGCATACGGAGCTCATTCCTAGTCTAAGATCGGACTGGA-CTGAGGGTTGCGG
65 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATC-GAGGGTTGCGG
* * * * * *
27072774 CAACAGGATCGGCAGCAAT-CAAGGGGGA-CTGGGCCGATCCTTGGCTTGTTCATTGTGCCTATC
129 CAGCAGGATCGACAGC-ATGTAAGGGGGATC-GGGCCGATCCTCGGCTTG-TCATTCTGCCTCTC
* * * * *
27072837 CGACCGACTGAGTGGTCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCAT
191 CGACCGACTGAG-AGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCAC
* * *
27072901 TTCTAAGCCCCAGCCGAACTGAGGGTTGT
254 ATCTAAGCCCCAGCCGGACAGAGGGTTGT
27072930 GGCTGCGGGA
Statistics
Matches: 533, Mismatches: 106, Indels: 34
0.79 0.16 0.05
Matches are distributed among these distances:
366 1 0.00
367 3 0.01
368 224 0.42
369 5 0.01
371 3 0.01
372 291 0.55
373 6 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (366 bp):
GCCTCTCTGGTCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCA
GCAGGATCGACAGCATGTAAGGGGGATCGGGCCGATCCTCGGCTTGTCATTCTGCCTCTCCGACC
GACTGAGAGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAG
CCCCAGCCGGACAGAGGGTTGTCGCAGCAGGACCAACAGCGAGATAGACAGCACGCAAAGGGAGA
CCAGGCTGATCCCCAGCTTGCACATTACGCCTCTCCGATCG
Found at i:27073254 original size:26 final size:26
Alignment explanation
Indices: 27073224--27073276 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27073214 GTTGACTTAG
27073224 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
27073250 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27073276 G
1 G
27073277 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27073435 original size:527 final size:526
Alignment explanation
Indices: 27072419--27073459 Score: 1229
Period size: 527 Copynumber: 2.0 Consensus size: 526
27072409 TAGGATCGAC
* * * * * *
27072419 AGCATGTAGGGGGGATCGGGTCGATCCTCGGCTTACGCATTCTGTCTCTCTGGCCGACTGAGCAC
1 AGCATGTAGGGGGGATCGGGCCAATCCCCAGCTTACGCATTCTGACTCTCCGGCCGACTGAGCAC
* * * *
27072484 CCGCATGCTCGTTTCGTGGCTTTGCTTAGGCATATGGAGTACATTCCACGTCTAAGCCCCAGCCG
66 CCGCACGCTCATTTCGTGGCTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCG
* * * * * * *
27072549 GATCGAGGGTTGTCGCAGTAGGACCAATAGCGAGATTAGCAGCACGTAAAGGGGGATCAGGCTGA
131 GACCGAGGGTTGTCGCAGCAGGACCAACAGCAAGATCAGCAACACGCAAAGGGGGATCAGGCTGA
* * *
27072614 TCCTCAGCTTGCACATTACGCCTCTCCGACTGGCCTCTCCGGTCGGCTGAGCGACCGCACGCTCG
196 TCCTCAACTTACACATTACGCCTCTCCGACTGGCCTCTCCGGTCGACTGAGCGACCGCACGCTCG
* * *
27072679 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACGGAGCTCATTCCTAG
261 TTTCATAGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACGGAGCTCATTCCCAG
* * * *
27072744 TCTAAGATCGGACTGGACTGAGGGTTGCGGCAACAGGATCGGCAGCAATCAAGGGGGACTGGGCC
326 TCTAAGATCGGACTGGACTGAGGGTTACGACAACAGGATCGGCAGCAAGCAAGGGGAACTGGGCC
*** ** * * * **
27072809 GATCCTTGGCTTGTTCATTGTGCCTATCCGACCGACTGAGTGGTCGCACGCCCGTTTCGTGGGTT
391 GATCCTCAACTTGCGCATTCTACCTATCCGACAGACTGAGACGTCGCACGCCCGTTTCGTGGGTT
* **
27072874 GGCTTAGGCATAGGGAGCTCATTCCATTTCTAAGCCCCAGCCGAA-CTGAGGGTTGTGGCTGCGG
456 GGCTTAGGCATACGGAGCTCATTCCACGTCTAAGCCCCAGCCGAATC-GAGGGTTGTGGCTGCGG
27072938 GACTGGT
520 GACTGGT
** **
27072945 AGCATGTAGAGGGGGATCGGGCCAATCCCCAGCTTGGGCATTC-GACATCTCCGGCCGGTTGAGC
1 AGCATGTAG-GGGGGATCGGGCCAATCCCCAGCTTACGCATTCTGAC-TCTCCGGCCGACTGAGC
* * * *
27073009 ACCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCTGT
64 ACCCGCACGCTCATTTCGTGGCTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGC
* * * * * * * *
27073074 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCAATATCGGCAACACGCAGAGGGTGATCGGGCT
129 CGGACCGAGGGTTGTCGCAGCAGGACCAACAGCAAGATCAGCAACACGCAAAGGGGGATCAGGCT
* * * *
27073139 GATCCTCAACTTACACATTATGCCTCTCTGA-TCGGCCTCTCTGG-CTGACTGAGCG-CTCGTAC
194 GATCCTCAACTTACACATTACGCCTCTCCGACT-GGCCTCTCCGGTC-GACTGAGCGAC-CGCAC
* *
27073201 GGTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATC-CTCAGTCTAAGCATACGGAGTTCAT
256 GCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCTC-CAGTCTAAGCATACGGAGCTCAT
* ** * * *
27073265 TCCCAGTCTAAGATCGGATTGGA-TCGAGGGTTACGACCGCTGGATCGGTAGCACGC-AGGGAGA
320 TCCCAGTCTAAGATCGGACTGGACT-GAGGGTTACGACAACAGGATCGGCAGCAAGCAAGGG-GA
* * **
27073328 ACTGGGCCGATCCTCAACTTGCGCATTCTACCTCTTCGACAGACTGAGCACG-CGCACGTTCGTT
383 ACTGGGCCGATCCTCAACTTGCGCATTCTACCTATCCGACAGACTGAG-ACGTCGCACGCCCGTT
* * * *
27073392 TTGTGGGTTTGCTTAGGCATACGGAG-TATATTCCACGTCTAAGCCCCAGCCGGATCGAGGGTTG
447 TCGTGGGTTGGCTTAGGCATACGGAGCT-CATTCCACGTCTAAGCCCCAGCCGAATCGAGGGTTG
27073456 TGGC
511 TGGC
27073460 AGTAGGACCA
Statistics
Matches: 428, Mismatches: 76, Indels: 21
0.82 0.14 0.04
Matches are distributed among these distances:
526 21 0.05
527 405 0.95
528 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (526 bp):
AGCATGTAGGGGGGATCGGGCCAATCCCCAGCTTACGCATTCTGACTCTCCGGCCGACTGAGCAC
CCGCACGCTCATTTCGTGGCTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCG
GACCGAGGGTTGTCGCAGCAGGACCAACAGCAAGATCAGCAACACGCAAAGGGGGATCAGGCTGA
TCCTCAACTTACACATTACGCCTCTCCGACTGGCCTCTCCGGTCGACTGAGCGACCGCACGCTCG
TTTCATAGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACGGAGCTCATTCCCAG
TCTAAGATCGGACTGGACTGAGGGTTACGACAACAGGATCGGCAGCAAGCAAGGGGAACTGGGCC
GATCCTCAACTTGCGCATTCTACCTATCCGACAGACTGAGACGTCGCACGCCCGTTTCGTGGGTT
GGCTTAGGCATACGGAGCTCATTCCACGTCTAAGCCCCAGCCGAATCGAGGGTTGTGGCTGCGGG
ACTGGT
Found at i:27074514 original size:26 final size:26
Alignment explanation
Indices: 27074436--27074505 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
27074426 GTTAGCTTAG
27074436 GCATACGGAGTTCATTCCATCTCTAA
1 GCATACGGAGTTCATTCCATCTCTAA
27074462 GCATACGGAGTTCATTCCATCTCTAA
1 GCATACGGAGTTCATTCCATCTCTAA
*
27074488 GCATACGGAGCTCATTCC
1 GCATACGGAGTTCATTCC
27074506 CAAGCTAAGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATCTCTAA
Found at i:27075543 original size:26 final size:26
Alignment explanation
Indices: 27075514--27075566 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27075504 GTTGACTTAG
*
27075514 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27075540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27075566 G
1 G
27075567 ATTGATCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27076044 original size:26 final size:26
Alignment explanation
Indices: 27076014--27076066 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27076004 GTTGGCTTAG
*
27076014 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
27076040 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
27076066 G
1 G
27076067 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:27078668 original size:26 final size:26
Alignment explanation
Indices: 27078632--27078684 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27078622 GTTGACTTAG
27078632 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCACT-CCCAGTCTAA
* *
27078658 GCATATGGAGTTCACTCCTAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
27078684 G
1 G
27078685 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:27078959 original size:158 final size:159
Alignment explanation
Indices: 27078665--27078992 Score: 349
Period size: 158 Copynumber: 2.1 Consensus size: 159
27078655 TAAGCATATG
* * * * * * * *
27078665 GAGTTCACTCCTAGTCTAAGATCGAACCGAATCTAGGGTTGTGACAGCGAGATCGGCAGCACGCT
1 GAGTTCATTCCCAATCTAAGATCAAACCGAATCGAGGGTTGCGACAGCGAGATCAGCAGCACGCA
* * *
27078730 GAGGAGGACCGAGCCTATCCCCCACTTGCACATTATGCCTCTTCGATCAGCTCAACGCCCGCACG
66 GAGGAGGACCGAGCCGATCCCCCACTTGCACATCATGCCTCTCCGATCAGCTCAACGCCCGCACG
* * *
27078795 CTCGTTTCGTGGGTTGACTTATGCATACA
131 CTCGTTTCATAGGTTGACTTAGGCATACA
*
27078824 GAGTTCATTCCCAATCTAAGATCAAACC-AGATCGAGGGTTGCGACAGC-AGGATCAGTAGCACG
1 GAGTTCATTCCCAATCTAAGATCAAACCGA-ATCGAGGGTTGCGACAGCGA-GATCAGCAGCACG
* ** * * * ** *
27078887 CAGAGG-GGACC-AGCCCGATCCTCGGCTTGCACATCCTGCCTCTCCGATCGGCTGAGTGCCCGT
64 CAGAGGAGGACCGAG-CCGATCCCCCACTTGCACATCATGCCTCTCCGATCAGCTCAACGCCCGC
* * *
27078950 ACGCTCGTTTCATATGTTGGCTTAGGCATACG
128 ACGCTCGTTTCATAGGTTGACTTAGGCATACA
*
27078982 GAGTACATTCC
1 GAGTTCATTCC
27078993 ATGTCTAAGC
Statistics
Matches: 138, Mismatches: 28, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 80 0.58
159 56 0.41
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (159 bp):
GAGTTCATTCCCAATCTAAGATCAAACCGAATCGAGGGTTGCGACAGCGAGATCAGCAGCACGCA
GAGGAGGACCGAGCCGATCCCCCACTTGCACATCATGCCTCTCCGATCAGCTCAACGCCCGCACG
CTCGTTTCATAGGTTGACTTAGGCATACA
Found at i:27079175 original size:26 final size:26
Alignment explanation
Indices: 27079146--27079198 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27079136 GTTGACTTAG
27079146 GCATACGGAGTTC-ATCCCTAGTCTAA
1 GCATACGGAGTTCGATCCC-AGTCTAA
*
27079172 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCGATCCCAGTCTAA
27079198 G
1 G
27079199 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCGATCCCAGTCTAA
Found at i:27079411 original size:514 final size:503
Alignment explanation
Indices: 27078076--27079452 Score: 1349
Period size: 514 Copynumber: 2.7 Consensus size: 503
27078066 TCTCTGGTCG
* * *
27078076 GCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCACACGGAGTTCATCCCCAGTCTAAG
1 GCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* *
27078141 CATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGGATCGAGGGTTGCGACAGCAAGATC
66 CATATGGAGTTCATTCCCAGTCTAAGATCGGA-C---T-GGATCTAGGGTTGCGACAGCAGGATC
* * * * *
27078206 GGCAGCACGTAGAGGGGACCGGGCTGATCCTCGGCTTG-TGCATTTTGCCTCTCCGATCGGCTGA
126 GGCAGCACGCAGAGGGGACCGGACCGATCCCCGGCTTGCT-CATTATGCCTCTCCGATCGGCTGA
* * *
27078270 GCGCCTGCACGCTCGTTTCATGGGTTGGCTTTGGCATACGGAGTACATTCCATGTCTAAGCCCCA
190 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCA
* *
27078335 ACTGGACCGAGGGTTGTGGCAGCAGGAT-CGACAGCGAGATCGACAGCACGTAGAAGGGATCGGC
255 ACTGGACCGAGGGTTGTGGCAGCAGGATCCGACAGC-A-A--G-CAG-A-G--G--GGGACCAGC
* * * * * * *
27078399 CCGATCCTCCACTTGCACATTATGCCTCTTCGATCGGTTCAGCACCCGTAGGCTTGTTTCGTGGG
309 CCGATCCTCCACTTGCACATCATGCCTCTCCGATCGGCTCAGCACCCGTACGCTCGTTTCATAGG
* * * * * *
27078464 TTGACTTATGCATACGGAGTTCATTCTTAGTCTAAGATCGGATCAGATCGAGGGTTGCAGTAGCA
374 TTGACTTAGGCATACGGAGTACATTCATAGTCTAAGACCAGATCAGATCGAGGGTTGCAGCAGCA
* * * * * * * *
27078529 GGATCAACAGCACGCAGGAAGGGATTGGGTTGATCCCCAACTTACGCATCCTGCCTCTCCGACCG
439 GGACCAACAGCACGCAGGAAGGGACTGAGCTGATCCCCAACTTACACATCATGCCTATCCGACCA
27078594 GCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * * * * *
27078659 CATATGGAGTTCACTCCTAGTCTAAGATCGAACCGAATCTAGGGTTGTGACAGC-GAGATCGGCA
66 CATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCTAGGGTTGCGACAGCAG-GATCGGCA
* * ** * * * * *
27078723 GCACGCTGAGGAGGACC-GAGCCTATCCCCCACTTGCACATTATGCCTCTTCGATCAGCTCAACG
130 GCACGCAGAGG-GGACCGGA-CCGATCCCCGGCTTGCTCATTATGCCTCTCCGATCGGCTGAGCG
* * * * * ** *
27078787 CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-ATCTAAGATCAAAC
193 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATT-CCATGTCTAAGCCCCAAC
** * * * * * * **
27078851 CAGATCGAGGGTTGCGACAGCAGGATCAG-TAGCACGCAGA-GGGGACCAGCCCGATCCTCGGCT
257 TGGACCGAGGGTTGTGGCAGCAGGATCCGACAGCAAGCAGAGGGGGACCAGCCCGATCCTCCACT
* * ** * *
27078914 TGCACATCCTGCCTCTCCGATCGGCTGAGTGCCCGTACGCTCGTTTCATATGTTGGCTTAGGCAT
322 TGCACATCATGCCTCTCCGATCGGCTCAGCACCCGTACGCTCGTTTCATAGGTTGACTTAGGCAT
* * * *
27078979 ACGGAGTACATTCCAT-GTCTAAGCCCCAGCT-GGATCGAGGGTTG-TGCCAGCAGGACCGATAG
387 ACGGAGTACATT-CATAGTCTAAG-ACCAGATCAGATCGAGGGTTGCAG-CAGCAGGACC-A-A-
** * *
27079041 CAAGATCGACAGCATGGAGAGGGGGACTGAGCTGATCCCCGGCTTACACATTATGCCTATCCGGC
446 C-AG--C-AC-GCA-GGA-A--GGGACTGAGCTGATCCCCAACTTACACATCATGCCTATCCGAC
27079106 CA
502 CA
* * * *
27079108 GCTGAGTGCCTGCACGGTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAG
1 GCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * * * *
27079173 CATACGGAGTTCGTTCCCAGTCTAAGATCGGACTGGATCTAGGGTTGCGGCTGCAGGATCGACAG
66 CATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCTAGGGTTGCGACAGCAGGATCGGCAG
* * * * *
27079238 CACACAGAGGGGACCGGACCGATCCCCGGCTTGCTCATTCTGCCTGTCCGGTTGGCTGAGCGCCC
131 CACGCAGAGGGGACCGGACCGATCCCCGGCTTGCTCATTATGCCTCTCCGATCGGCTGAGCGCCC
* * **
27079303 GCACGCTTGTTTCGTGGGTTGGCTTAGGAATACGGAGTACATTCCATGTCTAAGCCCCAGTTGGA
196 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAACTGGA
* * * *
27079368 CCGAGGGTTGTGGCAG-TGGGTCCGACAGCAAGCAGAGGGGGACCAAG-CTGATTC-CCAGCTTG
261 CCGAGGGTTGTGGCAGCAGGATCCGACAGCAAGCAGAGGGGGACC-AGCCCGATCCTCCA-CTTG
* * *
27079430 CACATTATGCCTCTTCGACCGGC
324 CACATCATGCCTCTCCGATCGGC
27079453 CTCCCCGGTC
Statistics
Matches: 689, Mismatches: 142, Indels: 60
0.77 0.16 0.07
Matches are distributed among these distances:
501 1 0.00
502 107 0.16
503 6 0.01
504 2 0.00
505 1 0.00
506 2 0.00
508 2 0.00
509 5 0.01
510 4 0.01
511 3 0.00
512 9 0.01
513 146 0.21
514 302 0.44
515 7 0.01
517 1 0.00
518 91 0.13
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (503 bp):
GCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
CATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCTAGGGTTGCGACAGCAGGATCGGCAG
CACGCAGAGGGGACCGGACCGATCCCCGGCTTGCTCATTATGCCTCTCCGATCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAACTGGA
CCGAGGGTTGTGGCAGCAGGATCCGACAGCAAGCAGAGGGGGACCAGCCCGATCCTCCACTTGCA
CATCATGCCTCTCCGATCGGCTCAGCACCCGTACGCTCGTTTCATAGGTTGACTTAGGCATACGG
AGTACATTCATAGTCTAAGACCAGATCAGATCGAGGGTTGCAGCAGCAGGACCAACAGCACGCAG
GAAGGGACTGAGCTGATCCCCAACTTACACATCATGCCTATCCGACCA
Found at i:27079532 original size:26 final size:26
Alignment explanation
Indices: 27079502--27079554 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27079492 GTTAACTTAG
27079502 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
27079528 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27079554 G
1 G
27079555 ATCGAACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27080027 original size:158 final size:157
Alignment explanation
Indices: 27079528--27080020 Score: 510
Period size: 158 Copynumber: 3.1 Consensus size: 157
27079518 CCTAGTCTAA
* * * * *
27079528 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTAGACCGGGGGTTGTGATAGCAAGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGTGGTAGCAGGATCGAC
* * * * *
27079592 AGCACACAGGGGGGATCGGGCGAATCCTCAGCTTTTGCATTCTGCCTC-TCTGGTCGACTGAGCG
65 AGCACACAGGGGGGATCGGCCG-ATCCCCGGCTTTCGCATTCTGCCTCTTC-GGTCGGCTGAGCG
*
27079656 CCCGCACGCCCGTTTCGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * ** *
27079686 GCATAGGGAGCTCATT-CCATGTCTAAGCCCTAG-CCGGAA-CGAGGGTTGTGGCAGTGGGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACC-GAACCGAGGGTTGTGGTAGCAGGATCG
** * * * * * * * * *
27079748 GTAGCACAAAGAGTGGGATCGGGCCGATCCCTGGCTTTCGCATTATGCCTCTTCAGCCAGTTCAG
63 ACAGCACACAG-GGGGGATC-GGCCGATCCCCGGCTTTCGCATTCTGCCTCTTCGGTCGGCTGAG
* * *
27079813 CGCCCGCACGCTCGTTTCATGGGTTGACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
27079845 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGTAGCAGGATCGACA
* * * * *
27079910 GCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCACATTCTGCCTCTTCGGTCGGCTGAGCGCC
66 GCACACAGGGGGGATC-GGCCGATCCCCGGCTTTCGCATTCTGCCTCTTCGGTCGGCTGAGCGCC
* *
27079975 CGCACGCTCATTTTGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
27080003 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
27080021 ATGTCTACGC
Statistics
Matches: 262, Mismatches: 63, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 136 0.52
159 112 0.43
160 11 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGTAGCAGGATCGACA
GCACACAGGGGGGATCGGCCGATCCCCGGCTTTCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:27080755 original size:26 final size:26
Alignment explanation
Indices: 27080725--27080777 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27080715 GTTGACTTAG
27080725 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
27080751 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27080777 G
1 G
27080778 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27081130 original size:26 final size:26
Alignment explanation
Indices: 27081093--27081145 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27081083 GTTGACTTAG
27081093 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
27081119 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
27081145 G
1 G
27081146 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:27081376 original size:368 final size:361
Alignment explanation
Indices: 27080683--27082040 Score: 1328
Period size: 368 Copynumber: 3.8 Consensus size: 361
27080673 TGCCTCTCTA
* * * *
27080683 GTCGATTGAGTGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
1 GTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATC
* * * *
27080748 TAAGCATATGGAGTTCATTCCCTGTCTAAGATCAGACCGGATTGAGGGTTGCGGTAG-CAGGATC
66 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGTC-GGATC
** * * *
27080812 GACAGCATGCTA-GGGGGACCGGGCCGATCCCCGATTTGTGCATTCTGCCTCTCCGGTCGGCTGA
130 GGTAGCACG-TAGGGGGGACCGGGCCGATCCCCG-CTTGTGCATTCTGCCTCTCCGGCCGGCTGA
* * * **
27080876 ACGACTGCACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCA
193 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCA
* * * * * *
27080941 GCCGGACCGAGGGTTGTGGTAGTAGAACTGGCAGCGGGATCGGCAGCACGCAGAGAGGAATCGGG
258 GCCAGACCGAGGGTTGTGGCAGTAGGACCGGCAGCGGGATCGGCAGCACGCAGAGGGGGATCGGG
27081006 CTGATGCTCGACTTGCGCATTATGCCTCTCCGATCGACCTTTTCG
323 CTGAT-CTCGACTTGCGCATTATGCCTCTCC-A-CG--C-TTTCG
* *
27081051 GTCGACTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAATC
1 GTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATC
* * *
27081116 TAAGCATACGTAGTTCATTCCCAGTCTAAGATTGGACCGGATCAAGGGTTGCGGTAGTCGGATCG
66 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGTCGGATCG
* * * * * *
27081181 GTAGCACGTAGGGGGGACCGGGCCAATCCGCTGCTTGCGCATTTTGCCTCTCCGACCGGCTGAGT
131 GTAGCACGTAGGGGGGACCGGGCCGATCC-CCGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGC
* *
27081246 GCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAAG
195 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCC-AG
** ** * * *
27081311 -CAGACCGAGGGTTGTAACAGTAGGACCAACAACGAGATCGGCAGCACGTAGAGGGGGATCGGGC
259 CCAGACCGAGGGTTGTGGCAGTAGGACCGGCAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGC
* * * *
27081375 TGATCCCCGAATTGCGTATTATGTCTCTCCAACCGGCTTCTCTG
324 TGAT-CTCGACTTGCGCATTATGCCTCTCC-A-C-GCTT-TC-G
* ** * * * * *
27081419 GCCGGTTGAGTGCCCGTACGCTCGTTTCATGGGTAGACTTAGACATACGGAGTTCATCCCCAGTC
1 GTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATC
** * * * * ** *
27081484 TAAGCATACGGAGTTCATTCGTAGTCTAAGATCGAATCGCACCGAGGGTTGCGACAGTAGGATCG
66 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGTCGGATCG
* * * * * * *
27081549 GTAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGTACATTCTACCTCTTCGGCTGACTGAGC
131 GTAGCACGTAGGGGGGACCGGGCCGATCCCC-GCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGC
* * * * * *
27081614 GCCCGCACACCCGTTTCGTTGGTAGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGC
195 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGC
* ** * * * * *
27081679 CAGACCAAGGGTTGTGGCAACAGGATCGGCAGTGGGATCGACAGCACGCGGAGGGGGACCGGGCT
260 CAGACCGAGGGTTGTGGCAGTAGGACCGGCAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGCT
* *
27081744 GATCTTCGGCTTGCGCATTAAGCCTCTCCA-GC--T--
325 GATC-TCGACTTGCGCATTATGCCTCTCCACGCTTTCG
* * * * *
27081777 G--G-CTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATATGGAGTTCATGCCCAATC
1 GTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATC
* * *
27081839 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGC--TA--C--A---
66 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGTCGGATCG
* * * * ** * * *
27081895 GCA-CAC--AGGAGGGG-TCGAGTCGATCCCCGACTTACGCATTCTGCCTCTCCGACTGACTGAG
131 GTAGCACGTAGG-GGGGACCGGGCCGATCCCCG-CTTGTGCATTCTGCCTCTCCGGCCGGCTGAG
* * *
27081956 TGCCCGCACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCC
194 CGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCCC
* * *
27082019 AGTCGGACCGAGGGTTATGGCA
257 AGCCAGACCGAGGGTTGTGGCA
27082041 ACGGGACCAG
Statistics
Matches: 820, Mismatches: 156, Indels: 53
0.80 0.15 0.05
Matches are distributed among these distances:
342 2 0.00
343 109 0.13
344 5 0.01
345 3 0.00
346 2 0.00
349 1 0.00
353 1 0.00
355 94 0.11
356 1 0.00
358 1 0.00
361 1 0.00
364 2 0.00
366 2 0.00
367 10 0.01
368 580 0.71
369 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (361 bp):
GTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAATC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGTCGGATCG
GTAGCACGTAGGGGGGACCGGGCCGATCCCCGCTTGTGCATTCTGCCTCTCCGGCCGGCTGAGCG
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCC
AGACCGAGGGTTGTGGCAGTAGGACCGGCAGCGGGATCGGCAGCACGCAGAGGGGGATCGGGCTG
ATCTCGACTTGCGCATTATGCCTCTCCACGCTTTCG
Found at i:27081852 original size:26 final size:26
Alignment explanation
Indices: 27081816--27081868 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27081806 GTTAACTTAG
*
27081816 GCATATGGAGTTCATGCCCAATCTAA
1 GCATACGGAGTTCATGCCCAATCTAA
* *
27081842 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAATCTAA
27081868 G
1 G
27081869 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAATCTAA
Found at i:27083018 original size:26 final size:26
Alignment explanation
Indices: 27082982--27083032 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27082972 TTGACTTAGG
27082982 CATACGGAGTTC-ATCCCCAGTCTAAA
1 CATACGGAGTTCAAT-CCCAGTCTAAA
*
27083008 CATATGGAGTTCAATCCCAGTCTAA
1 CATACGGAGTTCAATCCCAGTCTAA
27083033 GATCGGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCAATCCCAGTCTAAA
Found at i:27083727 original size:26 final size:26
Alignment explanation
Indices: 27083691--27083743 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27083681 GTTGACTTAG
27083691 GCATACGGAGTTCATGCCCAATCTAA
1 GCATACGGAGTTCATGCCCAATCTAA
* *
27083717 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAATCTAA
27083743 G
1 G
27083744 ATGAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAATCTAA
Found at i:27083762 original size:355 final size:356
Alignment explanation
Indices: 27082942--27083772 Score: 1018
Period size: 355 Copynumber: 2.3 Consensus size: 356
27082932 CTATCTGGTC
*
27082942 GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * **
27083007 ACATATGGAGTTCAATCCCAGTCTAAGATCG-GACCAAATCGAGGGTTGCGGTAGCAGGATCGAC
66 GCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCGAATCGAGGGTTGCGACAGCAGGATCGAC
* * *
27083071 AGCACGCAGAGGGGACCGGGCTGATCCCTGGCTTACGCATTCTGCCTCTCCCGCCGAATGAGCAC
131 AGCACGCAGAGGGGACCAGGCTGATCCCCGGCTTACACATTCTGCCTCTCCCGCCGAATGAGCAC
* * *
27083136 CTACACGCTAATTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCG
196 CTACACGCTAATTTCATGGGTAGGCTTAGGCATAAGGAGTACATTCCATGTCTAAGCCCCAGCCG
* * * * *
27083201 GACCGAGTGTTATGGCAGCAAGACCGGTAACAGGATCGACAGCACGTAGAGGGGGACTAGGCTGA
261 GACAGAGGGTTATGGCAACAAGACCGGCAACAGGATCGACAGCACGTAGAGGGGGACCAGGCTGA
* * *
27083266 TCCTCAGTGTGTGCATTATGCCTCTCCGTTT
326 TCCTCAGTGTGTGCATTAAGCCTCTCAGTCT
* *
27083297 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTTACTTAGGCATAGGGAGTTCATCCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * * * *
27083362 GCATACGAAGTTCATTCTCAGTCTAAGATCGA-ACCGCACCGAGGGTTGCGACAGTAGGATTGAT
66 GCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCGAATCGAGGGTTGCGACAGCAGGATCGAC
* * * * *
27083426 AGCACGCAGGGGGGACCAGGCTGATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGACTGATCGC
131 AGCACGCAGAGGGGACCAGGCTGATCCCCGGCTTACACATTCTGCCTCTCCCGCCGAATGA--GC
* * *
27083491 -CCGTACAC-C-CATTTCGTTGGTAGGCTTAGGCATAAGGAGTACATTCCATGTCTAAGCCCCAG
194 ACC-TACACGCTAATTTCATGGGTAGGCTTAGGCATAAGGAGTACATTCCATGTCTAAGCCCCAG
* * *** * *
27083553 CCGGACAGAGGGTTGTGGCAAC-AGAACTGGCAGTGGGATCGACAGCACGTGGAGGGGGACCGGG
258 CCGGACAGAGGGTTATGGCAACAAG-ACCGGCAACAGGATCGACAGCACGTAGAGGGGGACCAGG
* *
27083617 CTGAT-CTCCG-GCT-TACGCATTAAGCTTCTCTAG-CT
322 CTGATCCTCAGTG-TGT--GCATTAAGCCTCTC-AGTCT
* * * *
27083652 GGCTGAGCACCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATGCCCAATCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * *
27083717 GCATACGGAGTTCATTCCCAGTCTAAGAT-GAGACTGGATCGAGGGTTACGGCAGCA
66 GCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCGAATCGAGGGTTGCGACAGCA
27083773 CGCAGAGGGG
Statistics
Matches: 405, Mismatches: 61, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
353 2 0.00
354 9 0.02
355 383 0.95
356 4 0.01
357 7 0.02
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (356 bp):
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCGAGACCGAATCGAGGGTTGCGACAGCAGGATCGAC
AGCACGCAGAGGGGACCAGGCTGATCCCCGGCTTACACATTCTGCCTCTCCCGCCGAATGAGCAC
CTACACGCTAATTTCATGGGTAGGCTTAGGCATAAGGAGTACATTCCATGTCTAAGCCCCAGCCG
GACAGAGGGTTATGGCAACAAGACCGGCAACAGGATCGACAGCACGTAGAGGGGGACCAGGCTGA
TCCTCAGTGTGTGCATTAAGCCTCTCAGTCT
Found at i:27084038 original size:159 final size:159
Alignment explanation
Indices: 27083768--27084209 Score: 444
Period size: 159 Copynumber: 2.8 Consensus size: 159
27083758 AGGGTTACGG
* * * ** * * * * *
27083768 CAGCACGCAGA-GGGGTCCGGGTCGATCCCCGGCTTGCCCATTCTGTCTCTCCGACCGACTGAGC
1 CAGCACGAAGAGGGGGACTGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCAGATCGACTCAGC
* * * * * *
27083832 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCAGAGGGAGCTCATTCCTTGTCTAAGCCCCAG-
66 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCACCAGA
* * * *
27083896 TCAAACTGAGGGTTGTGGCAATGC-TATCGG
131 TCAAACCGAGGATTGTGGC-A-GCAGATCGA
* * * *
27083926 CAGCATGCAGAGGGGGACTGGGTCGATCCTCGGCTTGTGCATTATGCCTCTTCAG-TCGGCTCAG
1 CAGCACGAAGAGGGGGACTGGGTCGATCCCCGGCTTGTGCATTATGCCTC-TCAGATCGACTCAG
* * * * * *
27083990 CGCCCGTACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAG-ATCAG
65 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCACCAG
**
27084054 ATCGGACCGAGGATTGTGGCAGCAGGATCGA
130 ATCAAACCGAGGATTGTGGCAGCA-GATCGA
* * * * * *
27084085 CAGCACGAAGGGGGGGATTGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATCGATTGAGC
1 CAGCACGAAGAGGGGGACTGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCAGATCGACTCAGC
* * *
27084150 GCCTGCAGGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCA
27084210 TAGGGAGCTC
Statistics
Matches: 229, Mismatches: 48, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
157 2 0.01
158 17 0.07
159 206 0.90
160 4 0.02
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.25
Consensus pattern (159 bp):
CAGCACGAAGAGGGGGACTGGGTCGATCCCCGGCTTGTGCATTATGCCTCTCAGATCGACTCAGC
GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCACCAGA
TCAAACCGAGGATTGTGGCAGCAGATCGA
Found at i:27084941 original size:26 final size:26
Alignment explanation
Indices: 27084904--27084956 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
27084894 GTTGACTTAG
27084904 GCATACAGAGTTCA-TCGCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
27084930 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
27084956 G
1 G
27084957 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.88
27 2 0.08
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27085843 original size:26 final size:26
Alignment explanation
Indices: 27085806--27085863 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
27085796 CGTGGGTTGA
27085806 CTAAGGCATACGAAGTTCATCCCCAGT
1 CTAA-GCATACGAAGTTCATCCCCAGT
* *
27085833 CTAAGCATACGAAGTTCATTCTCAGT
1 CTAAGCATACGAAGTTCATCCCCAGT
27085859 CTAAG
1 CTAAG
27085864 ATCAGACCGG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
CTAAGCATACGAAGTTCATCCCCAGT
Found at i:27086215 original size:26 final size:26
Alignment explanation
Indices: 27086179--27086231 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27086169 GTTGACTTAG
*
27086179 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27086205 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27086231 G
1 G
27086232 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27086503 original size:159 final size:158
Alignment explanation
Indices: 27086245--27086745 Score: 471
Period size: 159 Copynumber: 3.2 Consensus size: 158
27086235 AAATCAGACT
* * *
27086245 GAGGGTTGTGCCAGCAGGATTGGCAGCACGT--AGGGGGACCGGGTCGAT-CCTCGACTTGGGCA
1 GAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCGGGTCGATCCCT-GACTTGCGCA
* * * ** * *
27086307 TTCTGCCTCTCCGGCCTGCTGAGTGCTTGCACACTCATTTCTTGGGTTGGCTTAGGCATA-GAGA
65 TTCTGCCTCTTCGGTCGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACG-GA
*
27086371 GCTCATTCCATGTCTAAGCCCCAGCCGAACC
129 G-TCATTCCATGTCTAAGCCCCAGCCGGACC
*
27086402 GAGGGTTGTGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCGGGTCGATCCCTGACTTGCGCAT
1 GAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCGGGTCGATCCCTGACTTGCGCAT
* * * * * *
27086467 TATGCCTCTTCGATCGGCTCAGTGCCCGTACGCTCATTTCATGGGTTGACTTATGCATACGGAGT
66 TCTGCCTCTTCGGTCGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAG-
* **** * *
27086532 TCATTCC-TACTCTAAG-ATTGGATCGGATC
130 TCATTCCAT-GTCTAAGCCCCAG-CCGGACC
* * * * * * * * * * * * * * *
27086561 AAGGGTTGCGACAGTAAGATCAGCAGCACGCAG-GAGGGATCGAGCCAATCCCCGGCTTGCACAT
1 GAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCGGGTCGATCCCTGACTTGCGCAT
* *
27086625 TCTGCCT-TTCCGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
66 TCTGCCTCTT-CGGTCGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAG
*
27086689 TACATTCCATGTCTAAGCCCCAGCTGGACC
130 T-CATTCCATGTCTAAGCCCCAGCCGGACC
*
27086719 GA-GGTTGTGGCAGCAGGACCGGCAGCA
1 GAGGGTTGTGGCAGCAGGATCGGCAGCA
27086746 GGATCGACAG
Statistics
Matches: 269, Mismatches: 65, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
157 50 0.19
158 95 0.35
159 120 0.45
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCGGGTCGATCCCTGACTTGCGCAT
TCTGCCTCTTCGGTCGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGT
CATTCCATGTCTAAGCCCCAGCCGGACC
Found at i:27086878 original size:170 final size:171
Alignment explanation
Indices: 27086656--27087046 Score: 477
Period size: 171 Copynumber: 2.3 Consensus size: 171
27086646 GTGCCCGCAC
* * *
27086656 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCTGGACCGA
1 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGA
* * *
27086721 -GGTTGTGGCAGCAGGACCGGCAGC-AGGATCGACAGCACACAGAAGGGGATCGGGCTGATCCTC
66 GGGTTGTGACAGCAGGACCGACAGCGA-GATCGACAGCACACAGAAGGGGATCGAGCTGATCCTC
* *
27086784 GGCTTATGCATTATACCTCTCTGACCGGCTAAGCACCCACACT
130 GGCTTACGCATTATACCTCTCCGACCGGCTAAGCACCCACA-T
*
27086827 -CTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGCCGGACCGA
1 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGA
* *** * *
27086891 GGGTTGTGATAGCAGGACCGACAGCGAGATCGACAGCATGTAGAGGGGGATCGAGTTGATCCTCG
66 GGGTTGTGACAGCAGGACCGACAGCGAGATCGACAGCACACAGAAGGGGATCGAGCTGATCCTCG
* * * * * *
27086956 GCTTGCGCATTATGCCTCTCCGGCTGGCTGAGCACCCATAT
131 GCTTACGCATTATACCTCTCCGACCGGCTAAGCACCCACAT
* * * * * *
27086997 GCTCATTTCATGGG-TGACCTAGGCATATGGAGTTCA-TCCCCTGTCTAAGC
1 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCAC-GTCTAAGC
27087047 ATACGGAGTT
Statistics
Matches: 189, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
169 4 0.02
170 87 0.46
171 97 0.51
172 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (171 bp):
GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGCCGGACCGA
GGGTTGTGACAGCAGGACCGACAGCGAGATCGACAGCACACAGAAGGGGATCGAGCTGATCCTCG
GCTTACGCATTATACCTCTCCGACCGGCTAAGCACCCACAT
Found at i:27087048 original size:26 final size:26
Alignment explanation
Indices: 27087019--27087071 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27087009 GGTGACCTAG
* *
27087019 GCATATGGAGTTCATCCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27087045 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27087071 G
1 G
27087072 ATCTGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Done.