Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 283 of 402
Found at i:27087399 original size:26 final size:26
Alignment explanation
Indices: 27087363--27087413 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
27087353 TTGACTTAGG
*
27087363 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACAGAGTTCATCCCCAGTCTAAA
*
27087389 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
27087414 GATCAGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAA
Found at i:27087512 original size:343 final size:344
Alignment explanation
Indices: 27086742--27087601 Score: 985
Period size: 343 Copynumber: 2.5 Consensus size: 344
27086732 CAGGACCGGC
* * * * * * * *
27086742 AGCAGGATCGACAGCACACAGAAGGGGATCGGGCTGATCCTCGGCTTATGCATTATACCTC-TCT
1 AGCAGGATCGACAGCACGCAGGA-GGGATCAGACCGATCCCCGGCTTACGCATTCTACCTCTTC-
* * * *
27086806 GACCGGCTAAGCACCCACACTCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGT
64 GACCGGTTGAGCACCCGCACCCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGT
* * * * *
27086871 CTAAGCCCTAGCCGGACCGAGGGTTGTGATAGCAGGACCGACAGCGAGATCGACAGCATGTAGAG
129 CTAAGCCCCAGTCGAACCGAGGGTTGTG---GC---A--G-CA-CGAGATCGACAGCACGCAGAG
* * * * ** * * *
27086936 GGGGATCGAGTTGATCCTCGGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGCACCCATATGCTC
184 GGGAACCGAGTTGATCCTCGACTTACGCATTATGCCTCTCCAACCGGCTGAGCACCCACACGCTC
* * * *
27087001 ATTTCATGGGTGACCTAGGCATATGGAGTTCATCCCCTGTCTAAGCATACGGAGTTCATTCCCAG
249 ATTTCATGGGTGACCTAGGCATACGGAGTTCATCCCCAGTCTAAACATACAGAGTTCATTCCCAG
*
27087066 TCTAAGATCTGACCGGATCAAGGGTTACGGT
314 TCTAAGATCAGACCGGATCAAGGGTTACGGT
* * **
27087097 AGTAGGATCGACAGCACGCAGGGGGGATCAGACCGATCCCCGGCTTGTGCATTCTACCTCTTCGA
1 AGCAGGATCGACAGCACGCAGGAGGGATCAGACCGATCCCCGGCTTACGCATTCTACCTCTTCGA
* * * * *
27087162 CCGGTTGAGCTA-TCGCACGCTCATTTCCTCGGTTGGCTTAGGCATACGGAGTACATTCCATGTC
66 CCGGTTGAGC-ACCCGCACCCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTC
*
27087226 TAAGCCCCAGTCGAACCGAGGGTTGTGGCAGCA-G-GATCGACAGCACGCAGAGGGGAACCGGGT
130 TAAGCCCCAGTCGAACCGAGGGTTGTGGCAGCACGAGATCGACAGCACGCAGAGGGGAACCGAGT
* * * *
27087289 TGATTCCT-GACTTACGCATTATGCCTCTCCAACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
195 TGA-TCCTCGACTTACGCATTATGCCTCTCCAACCGGCTGAGCACCCACACGCTCATTTCATGGG
*
27087353 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAACATACAGAGTTCATTCCCAGTCTAAGATC
259 -TGACCTAGGCATACGGAGTTCATCCCCAGTCTAAACATACAGAGTTCATTCCCAGTCTAAGATC
* * *
27087418 AGATCGGATCGAGGGTTGCGGT
323 AGACCGGATCAAGGGTTACGGT
* * *
27087440 AGCAGGATCGACAGCATGCAGGAGGGATC-GAACCGATCCCCGGCTTACGCATTCTGCCTTTTCG
1 AGCAGGATCGACAGCACGCAGGAGGGATCAG-ACCGATCCCCGGCTTACGCATTCTACCTCTTCG
** * * * *
27087504 GTCGGTTGAGCACCCGTACCCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTACATTTCACGTC
65 ACCGGTTGAGCACCCGCACCCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTC
* * *
27087569 TAAGCCCCAATCGAACCAAGGGTTGTGGTAGCA
130 TAAGCCCCAGTCGAACCGAGGGTTGTGGCAGCA
27087602 AGACCGGCAT
Statistics
Matches: 432, Mismatches: 67, Indels: 24
0.83 0.13 0.05
Matches are distributed among these distances:
342 74 0.17
343 219 0.51
345 2 0.00
346 1 0.00
348 1 0.00
351 2 0.00
354 111 0.26
355 22 0.05
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (344 bp):
AGCAGGATCGACAGCACGCAGGAGGGATCAGACCGATCCCCGGCTTACGCATTCTACCTCTTCGA
CCGGTTGAGCACCCGCACCCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCT
AAGCCCCAGTCGAACCGAGGGTTGTGGCAGCACGAGATCGACAGCACGCAGAGGGGAACCGAGTT
GATCCTCGACTTACGCATTATGCCTCTCCAACCGGCTGAGCACCCACACGCTCATTTCATGGGTG
ACCTAGGCATACGGAGTTCATCCCCAGTCTAAACATACAGAGTTCATTCCCAGTCTAAGATCAGA
CCGGATCAAGGGTTACGGT
Found at i:27088052 original size:342 final size:342
Alignment explanation
Indices: 27087384--27088099 Score: 814
Period size: 342 Copynumber: 2.1 Consensus size: 342
27087374 CATCCCCAGT
* * * * *
27087384 CTAAACATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGCAGGATC
1 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGATCAAGGGTTGCGGTACCAGGATC
* * * * *
27087449 GACAGCATGCAGGAGGGATCGAACCGATCCCCGGCTTACGCATTCTGCCTTTTCGGTCGGTTGAG
66 GACAGCACGCAGGAGGGACCGAACCGATCCCCAGCTTACGCATTCTGCCTTTCCGATCGGTTGAG
* * * * *
27087514 CACCCGTACCCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTACATTTCACGTCTAAGCCCCAA
131 CACCCGCAACCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCAA
* ** * * ** *
27087579 TCGAACCAAGGGTTGTGGTAGCAAGACCGGCATCGAGATCGGTAGCATGCAGAGGGGGACCGGGC
196 CCGAACCAAGGGTTGTGACAGCAAGACCGACAGCGAGATCGACAGCACGCAGAGGGGGACCGGGC
* * * *
27087644 TGATCCCCAGCTTGCACATTATACCTCTCCAACCTGCCTTACCTGTCGGTTGAGTGCCCGCACGC
261 TGATCCCCAGCTTGCACATTATACCTCTCCAACCGGCCTTACCTGGCGGTTGAGCGCCCACACGC
*
27087709 TCG-TTTCGTGGGTTCAC
326 TCGTTTTC-TAGGTTCAC
* *
27087726 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGATCAAGGGTTGCGGTACCAGGATC
1 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGATCAAGGGTTGCGGTACCAGGATC
* * * *** * *
27087791 GGCAGCACGTAGGGGGGACCGCGTCGATCCCCAGCTTGCGCATTCTGCCTTTCCGATCGGTTGGG
66 GACAGCACGCAGGAGGGACCGAACCGATCCCCAGCTTACGCATTCTGCCTTTCCGATCGGTTGAG
* * * * *
27087856 CACCCGCAAGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTACGCCCTAG
131 CACCCGCAACCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCAA
* * * *
27087921 CCGGACCGAGGGTTGTGACAGCAAGACCGACAGCGAGATCGACAGCACGTAGAGGGGGATCGGGC
196 CCGAACCAAGGGTTGTGACAGCAAGACCGACAGCGAGATCGACAGCACGCAGAGGGGGACCGGGC
* * * * *** *
27087986 TGAT-CCCTGACTTGCGCATTATGCCTCTTCGGTCGGCC-T-CTTCGGCAGGCTT-AGCGCCCAC
261 TGATCCCCAG-CTTGCACATTATACCTCTCCAACCGGCCTTACCT-GGC-GG-TTGAGCGCCCAC
*
27088047 ACGCTCGTTTTCTAGGTTGAC
322 ACGCTCGTTTTCTAGGTTCAC
*
27088068 CTAAGCATACGGAGTTCA-TCCCTTAGTCTAAG
1 CTAAGCATACAGAGTTCATTCCC--AGTCTAAG
27088100 TATACGGAGT
Statistics
Matches: 308, Mismatches: 59, Indels: 13
0.81 0.16 0.03
Matches are distributed among these distances:
340 2 0.01
341 11 0.04
342 281 0.91
343 14 0.05
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (342 bp):
CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGATCAAGGGTTGCGGTACCAGGATC
GACAGCACGCAGGAGGGACCGAACCGATCCCCAGCTTACGCATTCTGCCTTTCCGATCGGTTGAG
CACCCGCAACCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCAA
CCGAACCAAGGGTTGTGACAGCAAGACCGACAGCGAGATCGACAGCACGCAGAGGGGGACCGGGC
TGATCCCCAGCTTGCACATTATACCTCTCCAACCGGCCTTACCTGGCGGTTGAGCGCCCACACGC
TCGTTTTCTAGGTTCAC
Found at i:27088576 original size:135 final size:135
Alignment explanation
Indices: 27088311--27088567 Score: 361
Period size: 135 Copynumber: 1.9 Consensus size: 135
27088301 TTATGGCAAC
* * *
27088311 GGGACCGACAGCACACAGAAGGGGACCGGGTCGATCTCCGACTTGCGCATTATACCTCTTCTGTC
1 GGGACCGACAGCACACAGAAGGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCAGTC
* *
27088376 GGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAA
66 GGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
27088441 GATCA
131 GATCA
* * ** * * * *
27088446 GGGATCGACAGCACAGAGGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGTC
1 GGGACCGACAGCACACAGAAGGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCAGTC
* * * *
27088511 GGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
66 GGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
27088568 ATTTCTAAGC
Statistics
Matches: 105, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
135 105 1.00
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (135 bp):
GGGACCGACAGCACACAGAAGGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCAGTC
GGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCA
Found at i:27088600 original size:26 final size:26
Alignment explanation
Indices: 27088550--27088602 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27088540 GTTGGCTTAG
* *
27088550 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
27088576 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
27088602 G
1 G
27088603 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:27089314 original size:26 final size:26
Alignment explanation
Indices: 27089284--27089334 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
27089274 TTGACTTAGG
27089284 CATACAGAGTTCATCCCCAGTCTAAA
1 CATACAGAGTTCATCCCCAGTCTAAA
* *
27089310 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
27089335 GATCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAA
Found at i:27089678 original size:184 final size:183
Alignment explanation
Indices: 27089210--27089678 Score: 503
Period size: 184 Copynumber: 2.5 Consensus size: 183
27089200 TTCACCCGTT
* * ** * * * *
27089210 CGATCCCCGGCTTGCGCATCCTGCCTCTCTAGTCGATTAAGCGCCCGCATGCTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTGGCCGCACGCTCGTTTCATGGGT
* *
27089275 TGACTTAGGCATACAGAGTTCATCCCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCA
66 TGACTTAGGCATACAGAG-TCATCCCCAGTCTAAGCATACGGAGTTCATTACCAGTCTAAGATCA
* * * * * * *
27089340 GACCAGATCGAGGGTTGCGATATCAAGATCGACAGCACACAGGGGGGATCGGGC
130 GACCAGATCAAGGGTTACGACATCAAGATCGACAGCACACAAGGGGGACCAGAC
* * ** * ** *
27089394 TGATCCTCGGCTTATGCATTCTGCCTCTTTGACCGGCTGAGT-GCTCACACGCTCGTTTCATGGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTGGC-CGCACGCTCGTTTCATGGG
* * **
27089458 TTGATTTAGGCATACAGAGGTCATCCCCAGTCTAAGCATATGGAGTTCATTAGTAGTCTAAGATC
65 TTGACTTAGGCATACAGA-GTCATCCCCAGTCTAAGCATACGGAGTTCATTACCAGTCTAAGATC
* * * ** *
27089523 AGACCGGATCAAGGGTTACGGCAGT-AGGATCGGTAGCACGCAAGGGGGACCAGAC
129 AGACCAGATCAAGGGTTACGACA-TCAAGATCGACAGCACACAAGGGGGACCAGAC
* *
27089578 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGGCCGCACGCTCATTTCATGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTGGCCGCACGCTCGTTTCATGGGT
* * *
27089643 TGGCTTAGGCATACGGAGTACATTCCACA-TCTAAGC
66 TGACTTAGGCATACAGAGT-CA-TCCCCAGTCTAAGC
27089679 CCCAGCCAGA
Statistics
Matches: 230, Mismatches: 49, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
183 3 0.01
184 218 0.95
185 9 0.04
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.25
Consensus pattern (183 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGTGGCCGCACGCTCGTTTCATGGGT
TGACTTAGGCATACAGAGTCATCCCCAGTCTAAGCATACGGAGTTCATTACCAGTCTAAGATCAG
ACCAGATCAAGGGTTACGACATCAAGATCGACAGCACACAAGGGGGACCAGAC
Found at i:27089871 original size:26 final size:26
Alignment explanation
Indices: 27089834--27089886 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27089824 GTTGACTTAG
27089834 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
27089860 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
27089886 G
1 G
27089887 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27090955 original size:26 final size:26
Alignment explanation
Indices: 27090925--27090975 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
27090915 TTGACTTTGG
27090925 CATACGGAGTTCATCCCCAGTCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
*
27090951 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
27090976 GATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:27090978 original size:184 final size:184
Alignment explanation
Indices: 27090669--27091117 Score: 598
Period size: 184 Copynumber: 2.4 Consensus size: 184
27090659 CACCCATTCG
* * * *
27090669 ATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGTGCCCGTGCA--CTCGTTTCGTGGGT
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTG-CC-TGCACGCTCGTTTCATGGGT
* * *
27090732 TGACTTAGGCATAAGGAGTTCATCCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCG
64 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCG
* * *
27090797 GACCGGATTGAGGGTTACGGTAGCAGGATCGACAGCACATAGGAGGGACCAGGCCA
129 GACCGGATTGAGGGTTACGATAACAGGATCGACAGCACACAGGAGGGACCAGGCCA
* *
27090853 ATCCCCGGCTTGGGCATTTTGCCTCTCCGATCGGCTGAGTGCCTGCACGCTCGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCTGCACGCTCGTTTCATGGGTTG
*
27090918 ACTTTGGCATACGGAGTTCATCCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCGGA
66 ACTTAGGCATACGGAGTTCATCCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * *
27090983 CCGGATTGAGGGTTGCGATAACAGGATCGACAGCACGCAGGGGGGACCGGGCCG
131 CCGGATTGAGGGTTACGATAACAGGATCGACAGCACACAGGAGGGACCAGGCCA
* * * * * * ** *
27091037 AGCCCTGACTTGCGCATTCTG-TTCTCCGACCGGCTAAGCACCCGCACGCTCGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCTGCACGCTCGTTTCATGGGTTG
* *
27091101 GCTTAGACATACGGAGT
66 ACTTAGGCATACGGAGT
27091118 ACATTCCACG
Statistics
Matches: 231, Mismatches: 32, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
182 4 0.02
183 53 0.23
184 174 0.75
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (184 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCTGCACGCTCGTTTCATGGGTTG
ACTTAGGCATACGGAGTTCATCCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCGGATTGAGGGTTACGATAACAGGATCGACAGCACACAGGAGGGACCAGGCCA
Found at i:27091321 original size:26 final size:26
Alignment explanation
Indices: 27091291--27091343 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27091281 GTTGACTTAG
*
27091291 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
*
27091317 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
27091343 G
1 G
27091344 AATGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:27091401 original size:367 final size:367
Alignment explanation
Indices: 27090887--27091870 Score: 1208
Period size: 367 Copynumber: 2.7 Consensus size: 367
27090877 CTCCGATCGG
* * * * *
27090887 CTGAGTGCCTGCACGCTCGTTTCATGGGTTGACTTTGGCATACGGAGTTCATCCCCAGTCTAACC
1 CTGAGCGCCCGCACGCTCTTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * *
27090952 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGCGATAACAGGATCGACAGC
66 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGATAGCAGGATCGACAGC
* * * *
27091017 ACGCAGGGGGGACCGGGCCGAGCCCTGACTTGCGCATTCTGTTCTCCGACCGGCTAAGCACCCGC
131 ACGCACGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGTTCTCCGACCGGCTGAGCGCCCGC
* * * *
27091082 ACGCTCGTTTCATGGGTTGGCTTAGACATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGACC
196 ACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGACC
* * * *
27091147 GAGGGTTATAGCAGCAAGATC-GCCAGCGGGATTGGCAGCATGCAGAGGGGGACCAGGTTGATCC
261 GAGGGTTATAGCAGCAAGACCAG-CAGCGGGATTGACAGCATGCAGAGGGGGAACAGGCTGATCC
* *
27091211 CCGACTTAAGCATTATGCATCTCTGGTCGGCCTCTCCGGCCGA
325 CCGACTTAAGCATTATGCATCTCCGGTCGACCTCTCCGGCCGA
* *
27091254 CTGAGCGCTCGCACGCTCTTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCTTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * * *
27091319 ATACGAAGTTCATTCCCAATCTAAGAAT-GAACCAGATCGAGGATTATGATAGCAGGATCAACAG
66 ATACGAAGTTCATTCCCAGTCTAAG-ATCGGACCGGATCGAGGGTTACGATAGCAGGATCGACAG
* * * * ** *
27091383 CACGCATGGGGTACCGGGCCGATCCC-CAGCTTGCGCATTCTG-CCTCTCGGTCGACTGAGCGCC
130 CACGCACGGGGGACCGGGCCGATCCCTGA-CTTGCGCATTCTGTTCTC-CGACCGGCTGAGCGCC
* * *
27091446 CGCACACTCCTTTCGCGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGG
193 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGG
* * * ** * *
27091511 ATCGAGGGTTGTGGCAGCTGGACCAGCAGTGGGATTGACAGCATGCAGAGGGGGAACGGGCTGAT
258 ACCGAGGGTTATAGCAGCAAGACCAGCAGCGGGATTGACAGCATGCAGAGGGGGAACAGGCTGAT
** * * * *
27091576 CCCCGACTTGTGTATTATGCCTCTCCGGTCGACCTCTCCGGCTGG
323 CCCCGACTTAAGCATTATGCATCTCCGGTCGACCTCTCCGGCCGA
* * * *
27091621 CTGAGCGCCCGTATGCTCGTTTT-GTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAG
1 CTGAGCGCCCGCACGCTC-TTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
** ** *
27091685 CATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGA-CTGAGGGTTACGGCAGCAGGATTGACA
65 CATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATC-GAGGGTTACGATAGCAGGATCGACA
* * ** *
27091749 GCACACAGCGGGGGATCGGGTTGATCCCTGGCTTGCGCATTCTGCCTT-TCCGACCGGCTGAGCG
129 GCACGCA-CGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTG--TTCTCCGACCGGCTGAGCG
* *
27091813 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGC
191 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGC
27091871 ATACAGAGCT
Statistics
Matches: 519, Mismatches: 86, Indels: 22
0.83 0.14 0.04
Matches are distributed among these distances:
366 7 0.01
367 411 0.79
368 35 0.07
369 64 0.12
370 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (367 bp):
CTGAGCGCCCGCACGCTCTTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGATAGCAGGATCGACAGC
ACGCACGGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGTTCTCCGACCGGCTGAGCGCCCGC
ACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGACC
GAGGGTTATAGCAGCAAGACCAGCAGCGGGATTGACAGCATGCAGAGGGGGAACAGGCTGATCCC
CGACTTAAGCATTATGCATCTCCGGTCGACCTCTCCGGCCGA
Found at i:27092771 original size:26 final size:26
Alignment explanation
Indices: 27092735--27092811 Score: 145
Period size: 26 Copynumber: 3.0 Consensus size: 26
27092725 GTTGACTTAG
*
27092735 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27092761 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27092787 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
27092812 CCAAATTTGT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27094314 original size:26 final size:26
Alignment explanation
Indices: 27094278--27094354 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
27094268 GTTGACTTAG
27094278 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
*
27094304 GCATACGGAGTTCATACCCTGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* *
27094330 GCATACGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATACCCAGTCTA
27094355 TGATAGGATC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:27095320 original size:487 final size:494
Alignment explanation
Indices: 27094304--27095346 Score: 1248
Period size: 501 Copynumber: 2.1 Consensus size: 494
27094294 CCCAGTCTAA
* * * *
27094304 GCATACGGAGTTCATACCCTGTCTAAGCATACGGAGTTCATTCCTAGTCTATGATAGGATCGGAT
1 GCATACGGAGTTCATACCCTGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGAATCGGAT
* ** * * *
27094369 CGAGGGTTGTGGTAGCAAGATCGGTAGCACATAGAGGGGACCGGGCTGATCCCTGGCTTACGCAT
66 CGAGGGTTGCGGTAGCAAGATCGACAGCACATAGAGGGGACCGAGCTGATCCCCGACTTACGCAT
* * * * * *
27094434 TCTGCCTCTCCGATCGGTTGAGCACCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGC
131 TCTGCCTCTCCAACCGGCTGAGCACCCGCACACCCGTGTCGTGGGTTGGCTTAGGCATAGGGAGC
*
27094499 TCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTCGCAACGAGACCAGCAGTACGCAGAAG
196 TCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTCGCAACGAGACCAACAGTACGCAGAAG
* *
27094564 GGGACTGAGCCAAACCTCAGCTTGCACATTATGCCTCTTCGATTGGCTTAGCGCCTGTACGCTCA
261 GGGACCGAGCCAAACCTCAGCTTGCACATTATG-C-C-TC-A-T-GCTTA-CGCCTGCACGCTCA
** * * * *
27094629 TTTTGTGGGTTGACTTATGCATGTAGAGTTCATTCTCAGTCTAAAATTAGATCGGACCGAGGGTT
319 TTTCATGGGTTGACTTATGCATGTAGAGTTCATTCCCAGTCTAAAATCAGACCAGACCGAGGGTT
* * * * *
27094694 GTGGCAGCAGGATCGATAGCACATAGGGGGGATCGGGTCAATCCCTAGCTTGTGCATTCTGCCTC
384 GTGGCAGCAGGATCGATAGCACACAGGGGGGACCGGGTCAATCCCCAGCTTGCGCATTCTACCTC
* *
27094759 TCCGACCGACTGAGCGCCCGAAATCTCGTTTTATGGGTTGACTTAG
449 TCCGACCGACTGAGCGCCCGAAAGCTCGTTTCATGGGTTGACTTAG
* * * *
27094805 GCATATGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATCGGAT
1 GCATACGGAGTTCATACCCTGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGAATCGGAT
* * * *
27094870 TGAGGGTTGCGGTAGTAGGATCGACAGCACGCA-AG-GGGGACCGAGCTGATCCCCGACTTGCGC
66 CGAGGGTTGCGGTAGCAAGATCGACAGCA--CATAGAGGGGACCGAGCTGATCCCCGACTTACGC
** *
27094933 ATTCTGCCTCTCCAACCGGCTGAGTGCCCGCACACCCGTGTCGTTGGTTGGCTTAGGCATAGGGA
129 ATTCTGCCTCTCCAACCGGCTGAGCACCCGCACACCCGTGTCGTGGGTTGGCTTAGGCATAGGGA
* * ** *
27094998 GCTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGTGGGACCAACAGCT-CGCAG
194 GCTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTCGCAACGAGACCAACAG-TACGCAG
* * * * * * * *
27095062 AGGGGGACCGGGTCGATCC-CTGACTTGCGCATTATG-C-C-T-C-T-C-CCTGCACGCTCGTTT
258 AAGGGGACCGAGCCAAACCTCAG-CTTGCACATTATGCCTCATGCTTACGCCTGCACGCTCATTT
*
27095119 CATGGGTTGACTTATGCA--TACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG
322 CATGGGTTGACTTATGCATGTA-G-AGTTCATTCCCAGTCTAAAATCAGACCAGACCGAGGGTTG
* * * *
27095182 TGGCAGCAGGATTGATAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTACCTCT
385 TGGCAGCAGGATCGATAGCACACAGGGGGGACCGGGTCAATCCCCAGCTTGCGCATTCTACCTCT
* * *
27095247 CCGGCCGACTGAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAG
450 CCGACCGACTGAGCGCCCGAAAGCTCGTTTCATGGGTTGACTTAG
* * * ** *
27095292 GCATACGGAGTTCATTCCGTGTCTAAGCATGCGAAGCCCATTCCCAATCTAAGAT
1 GCATACGGAGTTCATACCCTGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
27095347 TTTGAGTGAC
Statistics
Matches: 464, Mismatches: 72, Indels: 26
0.83 0.13 0.05
Matches are distributed among these distances:
485 2 0.00
486 1 0.00
487 207 0.45
488 1 0.00
490 1 0.00
491 1 0.00
493 1 0.00
496 1 0.00
498 1 0.00
500 2 0.00
501 241 0.52
502 3 0.01
503 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (494 bp):
GCATACGGAGTTCATACCCTGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGAATCGGAT
CGAGGGTTGCGGTAGCAAGATCGACAGCACATAGAGGGGACCGAGCTGATCCCCGACTTACGCAT
TCTGCCTCTCCAACCGGCTGAGCACCCGCACACCCGTGTCGTGGGTTGGCTTAGGCATAGGGAGC
TCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTCGCAACGAGACCAACAGTACGCAGAAG
GGGACCGAGCCAAACCTCAGCTTGCACATTATGCCTCATGCTTACGCCTGCACGCTCATTTCATG
GGTTGACTTATGCATGTAGAGTTCATTCCCAGTCTAAAATCAGACCAGACCGAGGGTTGTGGCAG
CAGGATCGATAGCACACAGGGGGGACCGGGTCAATCCCCAGCTTGCGCATTCTACCTCTCCGACC
GACTGAGCGCCCGAAAGCTCGTTTCATGGGTTGACTTAG
Found at i:27096263 original size:12 final size:12
Alignment explanation
Indices: 27096246--27096276 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
27096236 TGAGGGTTGT
27096246 GGTAGCAGGACC
1 GGTAGCAGGACC
*
27096258 GGTAGCAGGATC
1 GGTAGCAGGACC
27096270 GGTAGCA
1 GGTAGCA
27096277 CGTAGAGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.19, G:0.42, T:0.13
Consensus pattern (12 bp):
GGTAGCAGGACC
Found at i:27096404 original size:26 final size:26
Alignment explanation
Indices: 27096368--27096421 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
27096358 GTTGACTTAG
27096368 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27096394 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27096420 GC
1 GC
27096422 TCAGACCAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27096599 original size:355 final size:354
Alignment explanation
Indices: 27095979--27097242 Score: 1281
Period size: 355 Copynumber: 3.5 Consensus size: 354
27095969 TGGTCGACTA
* * * * * * * *
27095979 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTTGGCATAAGAAATTCATCCCCATTCTAAGCATA
1 AGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* ** *
27096044 CAGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGACAGTAGGATC-G-A-CA-A
66 CGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGTAGGATCGGTAGCACA
* * * *
27096105 CATGTAGAGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTTTCCGACCGGGTAAGCGCCC
131 CA--T-G-GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
* * * *
27096170 GAACACTCATTTTGTGGGTTGGCTGAGGCATAC-AGAGTACTTTCCACGTCTAAGCCCCAG-TCG
192 GCACACTCATTTTGTGGGTTGGCTTAGGCATACGA-AGTACATTCCACATCTAAGCCCCAGCT-G
* * * ** * *
27096233 AACTGAGGGTTGTGGTAGCAGGACCGGTAGCAGGATCGGTAGCACGTAGAGAAGGACCGGGTTGA
255 AACTAAGGGTTGTGGCAGCAGGACCGGTAGC-GGATCGGTAGCACGCAGAGGGGGATCGGGATGA
* *
27096298 TCCCCGACTTGA-GCATTATGCCTCTCCGACCGGCTG
319 TCCTCGGCTT-ACGCATTATGCCTCTCCGACCGGCTG
* * *
27096334 AGCGCCCGTACACTCGTTTTATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
1 AGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* * * *
27096399 CGGAGTTCATTCCCAGTCTAAGCTCAGACCAGATCGAGGGTTGCGGTAGTAGGATCGGTAGCACA
66 CGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGTAGGATCGGTAGCACA
* **
27096464 CATGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCAACTGAGCGCCCGCAC
131 CATGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCAC
* * * *
27096529 GCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCTAGCTGGACTAA
196 ACTCATTTTGTGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCAGCTGAACTAA
* * * * * *
27096594 GGGTTGTGGCAGCAGGACCGGTAACGAGTTTGGTAGCATGCAGAGGGGGATCGGGCTAATCCTCG
261 GGGTTGTGGCAGCAGGACCGGTAGCG-GATCGGTAGCACGCAGAGGGGGATCGGGATGATCCTCG
* * **
27096659 GCTTACGCATTATGCCTTTCTGATAGGCTG
325 GCTTACGCATTATGCCTCTCCGACCGGCTG
* * * * * * *
27096689 AGTGCCTGCACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTTATCCCCAATCTAAGCATA
1 AGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
* ** *
27096754 CGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT-CTGATAACAAGATCGGTAGCAC
66 CGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGC-GATAGTAGGATCGGTAGCAC
* * * * * * *
27096818 ACA-GGGGGAACCGGGCCGATCCTCGACTTGCGCATTCTGTCTCTTCGACCGGTTGAGCACCCGC
130 ACATGGGGG-ATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGC
*
27096882 ACACTCATTTTGTGGGTT-GCTTAGGCATACGAAGTACATTCCACCTCTAAGCCCCAGCTGAACT
194 ACACTCATTTTGTGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCAGCTGAACT
* * ** *
27096946 GAA-GGTTATGGCAGCAGGACCGATAGCGGGATCGACAACACGCAGAGGGGGATCGGGATGATCC
259 -AAGGGTTGTGGCAGCAGGACCGGTAGC-GGATCGGTAGCACGCAGAGGGGGATCGGGATGATCC
* * *
27097010 TTGGCTTACGCATTATACCTCTTCGACCGGCCTCTTCG
322 TCGGCTTACGCATTATGCCTCTCCGACCGG---C-T-G
* * *
27097048 ATCGCCTGAACGCCCGTATGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCGTCCCCAGTC
1 A------G--CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTC
** * * * * * *
27097113 TAAGCATACGGAGTTCATTCTTAGTCTAAGATCGGATCGGACCGAGGGTTGCAACAGCAGGTTCG
58 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGTAGGATCG
** * * * * * * * * * * *
27097178 ACAGCACGCAGGGGGGACCGAGCTGGTCCCCGGCTTGTGCATTTTGGCTCTCCGGCCGACTGAGC
123 GTAGCACACATGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
27097243 ACCTGCATGC
Statistics
Matches: 746, Mismatches: 136, Indels: 42
0.81 0.15 0.05
Matches are distributed among these distances:
354 122 0.16
355 458 0.61
356 4 0.01
357 3 0.00
358 3 0.00
359 5 0.01
365 1 0.00
367 144 0.19
368 6 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (354 bp):
AGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGTAGGATCGGTAGCACA
CATGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCAC
ACTCATTTTGTGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCAGCTGAACTAA
GGGTTGTGGCAGCAGGACCGGTAGCGGATCGGTAGCACGCAGAGGGGGATCGGGATGATCCTCGG
CTTACGCATTATGCCTCTCCGACCGGCTG
Found at i:27096752 original size:26 final size:26
Alignment explanation
Indices: 27096723--27096775 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27096713 GTTGACTTAG
*
27096723 GCATACAGAGTTTATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
27096749 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
27096775 G
1 G
27096776 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:27097385 original size:710 final size:701
Alignment explanation
Indices: 27095981--27097487 Score: 1471
Period size: 710 Copynumber: 2.1 Consensus size: 701
27095971 GTCGACTAAG
* * * *
27095981 CGCCCGCACGCTCATTTCGTGGGTTGACTTTGGCATA-AGAAATTCATCCCCATTCTAAGCATAC
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATCCCCAATCTAAGCATAC
* ** * ** * ***
27096045 AGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGACAGTAGGATCGACAACATGT
65 GGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAACAAGATCGACAACACAC
* * *
27096110 AGAGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTTTCCGACCGGGTAAGCGCCCGAACA
130 AGAGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTTTCCGACCGGGTAAGCACCCGAACA
* * *
27096175 CTCATTTTGTGGGTTGGCTGAGGCATACAGAGTACTTTCCACGTCTAAGCCCCAGTCGAACTGAG
195 CTCATTTTGTGGGTTGGCTGAGGCATACAGAGTACATTCCACCTCTAAGCCCCAGTCGAACTGAA
* * * ** * * *
27096240 GGTTGTGGTAGCAGGACCGGTAGCAGGATCGGTAGCACGTAGAGAAGGACCGGGTTGATCCCCGA
260 GGTTATGGCAGCAGGACCGATAGCAGGATCGACAACACGCAGAGAAGGACCGGGATGATCCCCGA
* *
27096305 CTTGAGCATTATGCCTCTCCGACCGGCTGAGCGCCCGTACACTCGTTTTATGAGTTGACTTAGGC
325 CTTGAGCATTATACCTCTCCGACCGGCTGAGCGCCCGTACACTCGTTTCATGAGTTGACTTAGGC
* *
27096370 ATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCTCAGACCAGATCG
390 ATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
*** * ** * * *
27096435 AGGGTTGCGGTAGTAGGATCGGTAGCACACATGGGGGATCGGGCCGATCCCCGGCTTGCGCATTC
455 AGGGTTGCAACAGCAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTC
* * * *
27096500 TGCCTCTCCGATCAACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTAC
520 TGCCTCTCCGACCAACTGAGCACCCGCACGCCCATTTCGTGGGATGGCTTAGGCATACGAAGTAC
** * * ** *
27096565 ATTCCACATCTAAGCCCTAGCTGGACTAAGGGTTGTGGCAGCAGGACCGGTAACGAGTTTGGTAG
585 ATTCCACATCTAAGCCCTAGCCAGACCAAGGGCTGCAGCAGCAGGACCGATAAC-------G-AG
* * * * * *
27096630 CATGCAGAGGGGGATCGGGCTAATCCTCGGCTTACGCATTATGCCT-TTCTGATAGGCTGAG
642 CA-GCAGAGGGGGACCGGGCTAATCCCCGACTTACACATTATGCCTCTTC-GATAGGCTCAA
* * * * *
27096691 TGCCTGCACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTTATCCCCAATCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACG
* ** *
27096756 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT-CTGATAACAAGATCGGTAGCACAC
66 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGC-GACAACAAGATCGACAACACAC
* * * *
27096820 AG-GGGGAACCGGGCCGAT-CCTCGACTTGCGCATTCTGTCTCTT-CGACCGGTTGAGCACCCGC
130 AGAGGGG-ACCGGGCCGATCCCT-GACTTGCGCATTCTGCCT-TTCCGACCGGGTAAGCACCCGA
*
27096882 ACACTCATTTTGTGGGTT-GCTTAGGCATAC-GAAGTACATTCCACCTCTAAGCCCCAG-CTGAA
192 ACACTCATTTTGTGGGTTGGCTGAGGCATACAG-AGTACATTCCACCTCTAAGCCCCAGTC-GAA
* ** *
27096944 CTGAAGGTTATGGCAGCAGGACCGATAGCGGGATCGACAACACGCAGAGGGGGATCGGGATGATC
255 CTGAAGGTTATGGCAGCAGGACCGATAGCAGGATCGACAACACGCAGAGAAGGACCGGGATGATC
** * * **
27097009 CTTGGCTT-ACGCATTATACCTCTTCGACCGGCCTCTTCGATCGCCTGAACGCCCGTATGCTCGT
320 CCCGACTTGA-GCATTATACCTCTCCGACCGG---C-T-GA------G--CGCCCGTACACTCGT
* * * **
27097073 TTCATGGGTTGACTTAGGCATATGGAGTTCGTCCCCAGTCTAAGCATACGGAGTTCATTCTTAGT
371 TTCATGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * *
27097138 CTAAGATCGGATCGGACCGAGGGTTGCAACAGCAGGTTCGACAGCACGCAGGGGGGACCGAGCTG
436 CTAAGATCAGACCAGACCGAGGGTTGCAACAGCAGGATCGACAGCACACAGGGGGGACCGAGCCG
* * * * * * * * *
27097203 GTCCCCGGCTTGTGCATTTTGGCTCTCCGGCCGACTGAGCACCTGCATGCCCGTTTCGTGGGATG
501 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCAACTGAGCACCCGCACGCCCATTTCGTGGGATG
* * ** * ** * *
27097268 GCTTAGGTATAGGGTGCT-CATTGCATGTCTAAGCCCTAGCCAGACCGAGGGCTGCAGCAGCGGG
566 GCTTAGGCATACGAAG-TACATTCCACATCTAAGCCCTAGCCAGACCAAGGGCTGCAGCAGCAGG
* * * *
27097332 ACCGATAAC-A-CA-CAGAGGGTGACCGGG-TCGATCCCCGACTTGCACATTATGCCTCTTCGGT
630 ACCGATAACGAGCAGCAGAGGGGGACCGGGCT-AATCCCCGACTTACACATTATGCCTCTTCGAT
*
27097393 TGGCTCAA
694 AGGCTCAA
* * * * * *
27097401 CGCCCGTACACTCGTTTCGTGCGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATAC
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-ATCTAAGCATAC
* * *
27097465 GGAGCTCATTCCTAATCTAAGAT
65 GGAGTTCATTCCCAGTCTAAGAT
27097488 TTTGAGCCAT
Statistics
Matches: 642, Mismatches: 130, Indels: 50
0.78 0.16 0.06
Matches are distributed among these distances:
708 3 0.00
709 125 0.19
710 271 0.42
711 7 0.01
712 3 0.00
713 2 0.00
714 2 0.00
720 1 0.00
722 227 0.35
723 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (701 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAACAAGATCGACAACACACA
GAGGGGACCGGGCCGATCCCTGACTTGCGCATTCTGCCTTTCCGACCGGGTAAGCACCCGAACAC
TCATTTTGTGGGTTGGCTGAGGCATACAGAGTACATTCCACCTCTAAGCCCCAGTCGAACTGAAG
GTTATGGCAGCAGGACCGATAGCAGGATCGACAACACGCAGAGAAGGACCGGGATGATCCCCGAC
TTGAGCATTATACCTCTCCGACCGGCTGAGCGCCCGTACACTCGTTTCATGAGTTGACTTAGGCA
TACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
GGGTTGCAACAGCAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCT
GCCTCTCCGACCAACTGAGCACCCGCACGCCCATTTCGTGGGATGGCTTAGGCATACGAAGTACA
TTCCACATCTAAGCCCTAGCCAGACCAAGGGCTGCAGCAGCAGGACCGATAACGAGCAGCAGAGG
GGGACCGGGCTAATCCCCGACTTACACATTATGCCTCTTCGATAGGCTCAA
Found at i:27098084 original size:26 final size:26
Alignment explanation
Indices: 27098044--27098096 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27098034 GGTTGCTGAG
*
27098044 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
*
27098070 GCATACTGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
27098096 G
1 G
27098097 ATTTTAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:27099237 original size:184 final size:184
Alignment explanation
Indices: 27098924--27099327 Score: 461
Period size: 184 Copynumber: 2.2 Consensus size: 184
27098914 GAGTGCCCGT
* * * * *
27098924 ACGCTCGTTTAATGGGTTGGCTTAGGCATATGGAGTACATTCCATGTCTAAGCCCTAGTCGGATT
1 ACGCTCGTTTAATGGGTTGGCTTAGGCATACGAAGTACATTCCATGTCTAAGCCCCAGTCGAAAT
* * ** * ** *
27098989 GAGGGTTATGGCAGTAGGACCGGCAGTGGGATCGGTAGCACGCAGAGGGGGACCGAGTTGATCCC
66 GAGGGTTATGGCAGCAGGACCGGCAGCGGGATCGACAGCACACAGAGGGCAACCGAGCTGATCCC
* * * ** * *
27099054 CAGCTTGCACATTATGCCTTTTTGACCAGCCTCTCCGGCCGGCTAAGTGCGCAC
131 CAACTTGCACATTATCCCTCTCCGACCAGCCTCTCCGGCCGGCTAAGCGCCCAC
* *
27099108 ACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCATGTCTAAGCCCCAGTCGAACA
1 ACGCTCGTTTAATGGGTTGGCTTAGGCATACGAAGTACATTCCATGTCTAAGCCCCAGTCGAA-A
* *
27099173 T-AGGGTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCCCACAGAGGGCAACCG-GACTGATC
65 TGAGGGTTATGGCAGCAGGACCGGCAGCGGGATCGACAGCACACAGAGGGCAACCGAG-CTGATC
* * * * * * * * *
27099236 CCCAATTTTCGCATTATCCCTCTCCGACCGGCCTCTCTGGTCGGTTGAGCGCCCGC
129 CCCAACTTGCACATTATCCCTCTCCGACCAGCCTCTCCGGCCGGCTAAGCGCCCAC
* *
27099292 ACGCTCGTTTTATGGGTTGACTTAGGCATACGAAGT
1 ACGCTCGTTTAATGGGTTGGCTTAGGCATACGAAGT
27099328 TCATCCCTAG
Statistics
Matches: 182, Mismatches: 36, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
183 1 0.01
184 180 0.99
185 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
ACGCTCGTTTAATGGGTTGGCTTAGGCATACGAAGTACATTCCATGTCTAAGCCCCAGTCGAAAT
GAGGGTTATGGCAGCAGGACCGGCAGCGGGATCGACAGCACACAGAGGGCAACCGAGCTGATCCC
CAACTTGCACATTATCCCTCTCCGACCAGCCTCTCCGGCCGGCTAAGCGCCCAC
Found at i:27100944 original size:26 final size:26
Alignment explanation
Indices: 27100908--27100960 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27100898 GTTGACTTAG
27100908 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27100934 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27100960 G
1 G
27100961 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27101581 original size:368 final size:365
Alignment explanation
Indices: 27100869--27102959 Score: 1994
Period size: 368 Copynumber: 5.8 Consensus size: 365
27100859 CTCTTTGGTC
*
27100869 GGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * *
27100934 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGACAGCAGGATCGGCA
66 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGACAGCAGGATCGACA
* * * * *
27100999 GCGCGCAGGGGGCACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCC
131 GCACGCAGGGGGGACCGAGCCGATCCCTGACTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCC
* * * *
27101064 CGCACGCTCGTTTCATGGGTTGGCCTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCAG
196 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCAG
* * * * * * * * * *
27101129 ACCAAGGGTTGTGGCAGCAGGACCGATAACGGGATTGGCAGCACGTAGAGGGGGACTGGACTGAT
261 ACCGAGGGTTGTGGCAGCAGGATCGACAGCGAGATCGACAGCACGCAGAGGGGGACCGGGCTGAT
*
27101194 CTTCGACTTATGCATTATGCCTCTCCGATCGGCCTCTCTGACA
326 C-CCGACTTATGCATTATGCCTCT-CGATCGGCCTCTCTG-CA
* * * * *
27101237 GGCTGAGCGCCTGCACGCTCGTTTTGTGGGTTGACTTAGTCATACAGAGTTCATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * * * * * **
27101302 GCATATGGAGTTTATTCCCAGTCTAAGATCGGATCGAATCAAGAGTTACGGCAGTAGGATCGGTA
66 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGACAGCAGGATCGACA
* * * * * *
27101367 GCACGCAGTGGGGATCGAGCCGATCCCTGGCTTATGCATTCTGCCTCTCCGATCGGCTGAGCGCC
131 GCACGCAGGGGGGACCGAGCCGATCCCTGACTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCC
*
27101432 CGCACGCTCATTTCGTGGGTTGGATTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCAG
196 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCAG
* ** ** * * * *
27101497 ACCGAGGGTTGTGGCAGCAGGACCGGTAGCGAGATCGACAATACGTAGAGGAGGACCAGGTTGAT
261 ACCGAGGGTTGTGGCAGCAGGATCGACAGCGAGATCGACAGCACGCAGAGGGGGACCGGGCTGAT
* * * * * * * *
27101562 CCTCGATTTGTGGATTATGCCTCTCCGACCGACCTTTTCGGCT
326 CC-CGACTTATGCATTATGCCTCT-CGATCGGCC-TCTCTGCA
* * * * *
27101605 GGTTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * * *
27101670 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCAAGGGTTACGATAGCAGGATCGATA
66 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGACAGCAGGATCGACA
* * * * * * * ** *
27101735 GCACGGAGGGGGGACCGGGCTGATCCC-GGCTTGCGTATTCTGCCTCTCCGGCCGGTTGAGCACC
131 GCACGCAGGGGGGACCGAGCCGATCCCTGACTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCC
* * * * ** * *
27101799 TGCACGCCCTTTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCTAG-CC
196 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACATCTAAGCCCCAGTCA
* *
27101862 GAACCGAGGGTTGTGGCAGCGGGAT---CAGC-AG--C-AC-GTA-G-A-A-GGGGACCGGG-TC
260 G-ACCGAGGGTTGTGGCAGCAGGATCGACAGCGAGATCGACAGCACGCAGAGGGGGACCGGGCT-
* * * * **
27101914 GATCCCTGGCTTACGCATTATACCTCT---TCTG-CTGGCT-CA
323 GATCCC-GACTTATGCATTATGCCTCTCGATCGGCCTCTCTGCA
* *
27101953 -G-T-A---CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCGGTGTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * *
27102012 CCATGCGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAGGATCGACA
66 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGACAGCAGGATCGACA
* * * * * * * * * *
27102077 GCATGCAGGGGGGATC-AGGTCGAT-CCTCGGCTTGCGCATTCTGCCTCTCTGGCCAACTAAGTG
131 GCACGCAGGGGGGACCGA-GCCGATCCCT-GACTTACGCATTCTGCCTCTCCGGTCGACTGAGCG
* ** * *
27102140 CCCGAACGCTTGTTTTGTGGGTTGGCTTAGGCATACGAAGTACATTCCACATCTAAGCCCCAGTC
194 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTC
* * * * * *
27102205 AGACCGAGGGTTGTGGCAGCAGGATCGGCAGCGCGATTGGCAGCACGCAAAGGGGGACTGGGCTG
259 AGACCGAGGGTTGTGGCAGCAGGATCGACAGCGAGATCGACAGCACGCAGAGGGGGACCGGGCTG
*
27102270 ATCCCTGGCTTATGCATTATGCCTCTC---CGG-----C--C-
324 ATCCC-GACTTATGCATTATGCCTCTCGATCGGCCTCTCTGCA
* * * ** *
27102302 GGTTGAGCACCCGTACGCTTATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * * * *
27102367 GCATACGGAGTTCATTTCCAATCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAAGATCGATA
66 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGACAGCAGGATCGACA
* * * * * *
27102432 GCACGTAGGGGGGACCTG-GCCGATCCCCGACTTACGCATTCTGCCTCTCTGATCGATTGAGCAC
131 GCACGCAGGGGGGACC-GAGCCGATCCCTGACTTACGCATTCTGCCTCTCCGGTCGACTGAGCGC
* *
27102496 CCGCACGCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGT-T
195 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCA
* * * *
27102560 GCATCGAGGGTTGTGGCAGCAGGATCGACAGCGAGATCGATAGCACACAGAGGGGGATCGGGCTG
260 G-ACCGAGGGTTGTGGCAGCAGGATCGACAGCGAGATCGACAGCACGCAGAGGGGGACCGGGCTG
*
27102625 ATCCCCGACTTGTGCATTATGCCTCTTCGATCGGCCTCTCTGGTC-
324 AT-CCCGACTTATGCATTATGCCTC-TCGATCGGCCTCTCT-G-CA
* * *
27102670 GGTTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * *
27102735 GCATATGGAGTTCATTCCCAGTCTAAGATCAGA-CCGAACTAAGGGGTGC-AGTAGCAGGATC-A
66 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATC-AAGGGTTGCGA-CAGCAGGATCGA
* * * * * * * *
27102797 GCAGCATGCAGGGGGGATCGAGCCAATCCTTGAAATT-TGCATTCTACCTCTCCGGTCGGCTGAG
129 -CAGCACGCAGGGGGGACCGAGCCGATCCCTG-ACTTACGCATTCTGCCTCTCCGGTCGACTGAG
* * ** *
27102861 CGCCTGCACGC-CAATTTCGTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGTCCC
192 CGCCCGCACGCTC-ATTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACATCTAAGCCCC
* * * *
27102924 AGTCGGATCGAGGGTTGTGGCAGCGGGATCGGCAGC
255 AGTCAGACCGAGGGTTGTGGCAGCAGGATCGACAGC
27102960 ACGCAGAGGG
Statistics
Matches: 1412, Mismatches: 254, Indels: 114
0.79 0.14 0.06
Matches are distributed among these distances:
341 2 0.00
342 125 0.09
343 99 0.07
344 2 0.00
345 1 0.00
346 5 0.00
347 2 0.00
348 1 0.00
349 2 0.00
350 4 0.00
351 5 0.00
352 2 0.00
353 1 0.00
354 4 0.00
355 342 0.24
356 9 0.01
357 1 0.00
358 1 0.00
359 5 0.00
360 2 0.00
361 1 0.00
363 2 0.00
364 4 0.00
366 2 0.00
367 109 0.08
368 670 0.47
369 9 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (365 bp):
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGACAGCAGGATCGACA
GCACGCAGGGGGGACCGAGCCGATCCCTGACTTACGCATTCTGCCTCTCCGGTCGACTGAGCGCC
CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCAG
ACCGAGGGTTGTGGCAGCAGGATCGACAGCGAGATCGACAGCACGCAGAGGGGGACCGGGCTGAT
CCCGACTTATGCATTATGCCTCTCGATCGGCCTCTCTGCA
Found at i:27101674 original size:26 final size:26
Alignment explanation
Indices: 27101644--27101696 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27101634 GTTGACTTAG
*
27101644 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27101670 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27101696 G
1 G
27101697 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27102391 original size:26 final size:26
Alignment explanation
Indices: 27102341--27102393 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27102331 GTTGACTTAG
*
27102341 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
**
27102367 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
27102393 G
1 G
27102394 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:27103188 original size:157 final size:160
Alignment explanation
Indices: 27102874--27103225 Score: 387
Period size: 157 Copynumber: 2.2 Consensus size: 160
27102864 CTGCACGCCA
* * * * *
27102874 ATTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATT-CCATGTCTAAG-TCCCAG-TCGGATCGAG
1 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCAAAGAT--CAGATCAGATCGAG
* * *
27102936 GGTTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGACAGAGCTAATCCCTGACTTGCCCTATTA
63 GGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACAGAGCTAATCCCTGACTTGCCATATTA
* *
27103001 TGCCTCTTCGACCGGCTCAGCGTCCACATGCTC
128 TGCCTCTCCGACCGACTCAGCGTCCACATGCTC
* *
27103034 ATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCAAAGATCAGATCAGATCGA-GGT
1 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGATCAGATCGAGGGT
* * * * * * *
27103098 TGTGGGAGCAGGATCGACAGCATGCAG-GGGGGACCG-GGTGGATCCCTGGCTTG-CATATTCTG
66 TGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACAGAGCT-AATCCCTGACTTGCCATATTATG
* * *
27103160 CCTCTCCGACCGACTGAGTG-CTCGCATGCTC
130 CCTCTCCGACCGACTCAGCGTC-CACATGCTC
* *
27103191 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
1 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
27103226 TTACGTCTAA
Statistics
Matches: 161, Mismatches: 26, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
156 1 0.01
157 64 0.40
158 19 0.12
159 29 0.18
160 44 0.27
161 4 0.02
ACGTcount: A:0.19, C:0.24, G:0.31, T:0.26
Consensus pattern (160 bp):
ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGATCAGATCGAGGGT
TGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACAGAGCTAATCCCTGACTTGCCATATTATGC
CTCTCCGACCGACTCAGCGTCCACATGCTC
Found at i:27103970 original size:26 final size:26
Alignment explanation
Indices: 27103934--27103984 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
27103924 TGACTTAGGT
27103934 ATATGGAGTTCATCCCCAGTCTAAGC
1 ATATGGAGTTCATCCCCAGTCTAAGC
* * *
27103960 ATATGGTGTTCATTCCTAGTCTAAG
1 ATATGGAGTTCATCCCCAGTCTAAG
27103985 ATCAAACTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (26 bp):
ATATGGAGTTCATCCCCAGTCTAAGC
Found at i:27104330 original size:26 final size:26
Alignment explanation
Indices: 27104300--27104361 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
27104290 GTTGACTTAG
*
27104300 GCATACAGAGTTCA-TCTCGAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
*
27104326 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
27104352 GCATGCAGAG
1 GCATACAGAG
27104362 GGGGACCGGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 29 0.94
27 2 0.06
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27104644 original size:26 final size:26
Alignment explanation
Indices: 27104604--27104656 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27104594 GTTAGCTTAG
*
27104604 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGCTCATTCCTA-GTCTAA
27104630 GCATACGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCTAGTCTAA
27104656 G
1 G
27104657 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCTAGTCTAA
Found at i:27105362 original size:26 final size:26
Alignment explanation
Indices: 27105326--27105378 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27105316 GTTGACTTAG
27105326 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
27105352 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27105378 G
1 G
27105379 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27105711 original size:26 final size:26
Alignment explanation
Indices: 27105681--27105733 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27105671 GTTGACTTAG
*
27105681 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
27105707 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27105733 G
1 G
27105734 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27105915 original size:355 final size:347
Alignment explanation
Indices: 27105252--27106761 Score: 1338
Period size: 343 Copynumber: 4.3 Consensus size: 347
27105242 TACCACCCGT
** * ** * **
27105252 TCGATCCCCGGCTTACGCATCCTACCTCTCCGACCGACTGAGTGCCCGCACGCTCATTTCGTGGG
1 TCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTTGTTTCGTGGG
*
27105317 TTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * **
27105382 AAATCAGATCGAGGGTTGCGACAACAGGATC-AGCAGCACGC-AGGGTGGACCGAACCGATCCCT
131 GAACCAGATCGAGGGTTGCGACAACAGGATCGA-CAACACACAAGGG-GGACCGGGCCGATCCC-
* * * ** *
27105445 GGCTTACGCAGTCTGCCTCTCCGG-CTGGCTGAGCTCCCACACTCTTGTTTCATGGGTTGGCTTT
193 GGCTTACGCATTCTGCCTCTCCGGTC-GGCTGAGCTCCCGCACGCCCGTTTCATGGGTTGGCTTA
* ** * * * *
27105509 GGCATACGTAGTACATTCCACATCTAAGGCGCAGTC-GAGCCGAGTGTTGTGGTAGCAGGACCAG
257 GGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGA-CCGAGGGTTGTGGTAGCAGGACC-G
27105573 CAGCGGGAATGACAGCACGTAGAGGGGGACCCGGC
320 -AGC----A-GACAGCACGTAGAGGGGGA-CCGGC
* * *
27105608 T-GATCCCCGGCTTACCCATTATGCCTCTCCGGTCGGCTGAGTGCTCGCACGCTTGTTTCATGGG
1 TCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTTGTTTCGTGGG
* * *
27105672 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATT
66 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
27105737 GGACCGGATCGAGGGTTGCGACAACAAGATCGATAGCACACAAGGGGGACCGGGCCGATCCTCAG
131 GAACCAGATCGAGGGTTGCGACAACAGGATCGACAACACACAAGGGGGACCGGGCCGATCC-CGG
* * * * *
27105802 CATACGCATTCTGTCTCTTCGGTCGGCTGAGCTCCTGCACGCCCATTTCATGGGTTGGCTTAGGC
195 CTTACGCATTCTGCCTCTCCGGTCGGCTGAGCTCCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
* * * *
27105867 ATAGGGAGCT-CATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGC-GG---GATCA
260 ATACGGAG-TACATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACCGAGCA
* * *
27105927 G-CAGCACGTAGAAGGGGATCGGG
324 GACAGCACGTAGAGGGGGACCGGC
* * * * * *
27105950 TCGATCCCTGGCTTACGCATTATACCTCTTCCGCT-GGCTCAGTACCCGCACGCTTGTTTTGTGG
1 TCGATCCCCGGCTTACGCATTATGCCTC-TCCGGTCGGCTGAGTGCCCGCACGCTTGTTTCGTGG
* *
27106014 GTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGAT
65 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** * * *
27106079 CGGACCGGATCGAGGGTT-CTGACAGTAGGATCGACAACACACAGGGGGGATCGGGTCGATCCTC
130 CGAACCAGATCGAGGGTTGC-GACAACAGGATCGACAACACACAAGGGGGACCGGGCCGATCC-C
* * * * * * * * *
27106143 GGCTTGCGTATTCTACCTTTTCGATCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAG
193 GGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCTCCCGCACGCCCGTTTCATGGGTTGGCTTAG
** * * *
27106208 TTATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTATGGTTGCAGGACCGGTA
258 GCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACC-G-A
** *
27106273 GCGAGATCGACAGCACACAGA-GGGGATCGAGC
321 GC---A--GACAGCACGTAGAGGGGGACCG-GC
* * * * *
27106305 T-GATCCCCGACTTGCGCATTATGCCTCTCCGGTCAGCCTCTCCGACTAGCTGAGCACCCGTACA
1 TCGATCCCCGGCTTACGCATTATGCCTCTCCGGTC-G--GCT--G---AG-T--G--CCCGCACG
* *
27106369 CTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC-GATCTAAGCATATGGAGTTCATT
53 CTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAG-TCTAAGCATACGGAGTTCATT
* * * * ** * * * *
27106433 CACAGTCTAAGATTGAACCAGACCGAGAGTTGCGGTAGCAGGATCGGCAACACGCAGGGGGGACC
117 CCCAGTCTAAGATCGAACCAGATCGAGGGTTGCGACAACAGGATCGACAACACACAAGGGGGACC
* * * * * * * *
27106498 GGGTCGATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTGAACGCCCGCACACCTGTTTCAT
182 GGGCCGAT-CCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAGCTCCCGCACGCCCGTTTCAT
*
27106563 GGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGT
246 GGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGT
* *
27106627 AGCGGGACCG-GCA-ACACGCA-G-AG-GGGGGATCAGG-
310 AGCAGGACCGAGCAGACA-GCACGTAGAGGGGGA-CCGGC
* * * * * * * ** *
27106661 TCGATCCCTGACTTGCCCATTATGCCTTTTCGGTCGGCTCAACGCCCGCACGCTAGTTTCGTGGG
1 TCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTTGTTTCGTGGG
* * *
27106726 TTGACTAATGCATACGGAGTTCATTCCCAGTCTAAG
66 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
27106762 ATCAGATCGG
Statistics
Matches: 946, Mismatches: 162, Indels: 104
0.78 0.13 0.09
Matches are distributed among these distances:
342 6 0.01
343 274 0.29
344 56 0.06
345 2 0.00
346 1 0.00
348 1 0.00
349 5 0.01
350 1 0.00
352 1 0.00
353 5 0.01
354 35 0.04
355 261 0.28
356 13 0.01
357 39 0.04
358 4 0.00
359 3 0.00
361 1 0.00
362 2 0.00
363 1 0.00
364 2 0.00
366 2 0.00
367 227 0.24
368 4 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (347 bp):
TCGATCCCCGGCTTACGCATTATGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTTGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
GAACCAGATCGAGGGTTGCGACAACAGGATCGACAACACACAAGGGGGACCGGGCCGATCCCGGC
TTACGCATTCTGCCTCTCCGGTCGGCTGAGCTCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCA
TACGGAGTACATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACCGAGCAGA
CAGCACGTAGAGGGGGACCGGC
Found at i:27106060 original size:26 final size:26
Alignment explanation
Indices: 27106024--27106076 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27106014 GTTGACTTAG
*
27106024 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27106050 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27106076 G
1 G
27106077 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27106600 original size:710 final size:699
Alignment explanation
Indices: 27105252--27106761 Score: 1734
Period size: 698 Copynumber: 2.1 Consensus size: 699
27105242 TACCACCCGT
* ** * * *
27105252 TCGATCCCCGGCTTACGCATCCTACCTC-TCCGACCGACTGAGTGCCCGCACGCTCA-TTTCGTG
1 TCGATCCCTGGCTTACGCATTATACCTCTTCCG-CTGGCTCAGTGCCCGCACGCT-AGTTTCGTG
*
27105315 GGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
64 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *
27105380 TCAAATCAGATCGAGGGTTGCGACAACAGGATCAGCAGCACGCAGGGTGGACCGAACCGATCCCT
129 TCAAACCAGATCGAGGGTTGCGACAACAGGATCAGCAACACACAGGGGGGACCGAACCGATCCCT
* * * * *
27105445 GGCTTACGCAGTCTGCCTCTCCGGCTGGCTGAGCTCCCACACTCTTGTTTCATGGGTTGGCTTTG
194 GGCTTACGCAGTCTACCTCTCCGGCTGGCTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
27105510 GCATACGTAGTACATTCCACATCTAAGGCGCAGTCGAGCCGAGTGTTGTGGTAGCAGGACCAGCA
259 GCATACGGAGTACATTCCACATCTAAGCCCCAGTCGAGCCGAGGGTTATGGTAGCAGGACCAGCA
* ** *
27105575 GCGGGAATGACAGCACGTAGAGGGGGACCCGGCTGATCCCCGGCTTACCCATTATGCCTCTCCGG
324 GCGAGAATGACAGCACACAGAGGGGGACCCGGCTGATCCCCGACTTACCCATTATGCCTCTCCGG
* *
27105640 TCGGCTGAGTGCTCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
389 TCGGCTGACTGCTAGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
* * * * *
27105705 AAGCATATGAAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGACAACAAGATCGA
454 AAGCATATGAAGTTCATTCACAGTCTAAGATTGAACCAGACCGAGAGTTGCGACAACAAGATCGA
* * * * * * * *
27105770 TAGCACACAAGGGGGACCGGGCCGATCCTCAGCATACGCATTCTGTCTCTTCGGTCGGCTGAGCT
519 CAACACACAAGGGGGACCGGGCCGATCCCCAGCATACACATTCTGCCTCTCCGGTCGGCTGAACG
* * *
27105835 CCTGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTAGCC
584 CCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCC
* * * *
27105900 GGACCGAGGGTTGTGGCAGCGGGATCAGCAGCACGTAGA-AGGGGATCGGG
649 GGACCGAGGGTTGTGGCAGCGGGACCAGCAACACGCAGAGAGGGGATCAGG
* * *
27105950 TCGATCCCTGGCTTACGCATTATACCTCTTCCGCTGGCTCAGTACCCGCACGCTTGTTTTGTGGG
1 TCGATCCCTGGCTTACGCATTATACCTCTTCCGCTGGCTCAGTGCCCGCACGCTAGTTTCGTGGG
* *
27106015 TTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
** * ** * ***
27106080 GGACCGGATCGAGGGTT-CTGACAGTAGGATC-GACAACACACAGGGGGGATCGGGTCGAT-CCT
131 AAACCAGATCGAGGGTTGC-GACAACAGGATCAG-CAACACACAGGGGGGACCGAACCGATCCCT
* * * * * * * *
27106142 CGGCTTGCGTATTCTACCTTTTC-GATCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTT
194 -GGCTTACGCAGTCTACCTCTCCGGCT-GGCTGAGCACCCACACGCTCGTTTCATGGGTTGGCTT
** ** * *
27106206 AGTTATACGGAGTACATTCCATGTCTAAGCCCCAGTCG-GACCGAGGGTTATGGTTGCAGGACCG
257 AGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCGAG-CCGAGGGTTATGGTAGCAGGACCA
* * * *
27106270 GTAGCGAG-ATCGACAGCACACAGA-GGGGA-TCGAGCTGATCCCCGACTTGCGCATTATGCCTC
321 GCAGCGAGAAT-GACAGCACACAGAGGGGGACCCG-GCTGATCCCCGACTTACCCATTATGCCTC
*
27106332 TCCGGTCAGCCTCTCCGACTAGCTGAGCACCCGTACACTTGTTTCATGGGTTGACTTAGGCATAC
384 TCCGGTC-G--GCT--GACT-GCT-AGCA--CG----CTTGTTTCATGGGTTGACTTAGGCATAC
*
27106397 GGAGTTCATCCCC-GATCTAAGCATATGGAGTTCATTCACAGTCTAAGATTGAACCAGACCGAGA
436 GGAGTTCATCCCCAG-TCTAAGCATATGAAGTTCATTCACAGTCTAAGATTGAACCAGACCGAGA
** * * * * * * * *
27106461 GTTGCGGTAGCAGGATCGGCAACACGCAGGGGGGACCGGGTCGATCCCC-GACTTGCACATTCTG
500 GTTGCGACAACAAGATCGACAACACACAAGGGGGACCGGGCCGATCCCCAG-CATACACATTCTG
**
27106525 CCTCTCCGGTCGGCTGAACGCCCGCACACCTGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCAT
564 CCTCTCCGGTCGGCTGAACGCCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGCTCAT
* * *
27106590 TCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGACCGGCAACACGCAGAGGGGGG
629 TCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCAGCAACACGCAGAGAGGGG
27106655 ATCAGG
694 ATCAGG
* * * * * * **
27106661 TCGATCCCTGACTTGCCCATTATGCCT-TTTCGGTCGGCTCAACGCCCGCACGCTAGTTTCGTGG
1 TCGATCCCTGGCTTACGCATTATACCTCTTCCGCT-GGCTCAGTGCCCGCACGCTAGTTTCGTGG
* * *
27106725 GTTGACTAATGCATACGGAGTTCATTCCCAGTCTAAG
65 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
27106762 ATCAGATCGG
Statistics
Matches: 675, Mismatches: 111, Indels: 39
0.82 0.13 0.05
Matches are distributed among these distances:
696 2 0.00
697 48 0.07
698 270 0.40
699 4 0.01
700 2 0.00
702 3 0.00
703 3 0.00
704 3 0.00
706 2 0.00
709 2 0.00
710 247 0.37
711 89 0.13
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (699 bp):
TCGATCCCTGGCTTACGCATTATACCTCTTCCGCTGGCTCAGTGCCCGCACGCTAGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
AAACCAGATCGAGGGTTGCGACAACAGGATCAGCAACACACAGGGGGGACCGAACCGATCCCTGG
CTTACGCAGTCTACCTCTCCGGCTGGCTGAGCACCCACACGCTCGTTTCATGGGTTGGCTTAGGC
ATACGGAGTACATTCCACATCTAAGCCCCAGTCGAGCCGAGGGTTATGGTAGCAGGACCAGCAGC
GAGAATGACAGCACACAGAGGGGGACCCGGCTGATCCCCGACTTACCCATTATGCCTCTCCGGTC
GGCTGACTGCTAGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
GCATATGAAGTTCATTCACAGTCTAAGATTGAACCAGACCGAGAGTTGCGACAACAAGATCGACA
ACACACAAGGGGGACCGGGCCGATCCCCAGCATACACATTCTGCCTCTCCGGTCGGCTGAACGCC
CGCACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAGCCGG
ACCGAGGGTTGTGGCAGCGGGACCAGCAACACGCAGAGAGGGGATCAGG
Found at i:27106710 original size:160 final size:158
Alignment explanation
Indices: 27106453--27106921 Score: 399
Period size: 160 Copynumber: 2.9 Consensus size: 158
27106443 GATTGAACCA
* *
27106453 GACCGAGAGTTGCGGTAGCAGGATCGGCAACACGCAGGGGGGACCGGGTCGATCCCCGACTTGCA
1 GACCGAGAGTTGCGGTAGCAGGACCGGCAACACGCAGGGGGGACCAGGTCGATCCCCGACTTGCA
* * * * *
27106518 CATTCTGCCTCTCCGGTCGGCTGAACGCCCGCACACCT-GTTTCATGGGTTGGCTTAGGCATAGG
66 CATTATGCCTCTCCGGTCGGCTCAACGCCCGCAC-CCTAGTTTCATGGGTTGACTAAGGCATACG
27106582 GAGCTCATT-CCATGTCTAAGCCCCAGCCG
130 GAGCTCATTCCCA-GTCTAAGCCCCAGCCG
* * * * *
27106611 GACCGAGGGTTGTGGTAGCGGGACCGGCAACACGCAGAGGGGGGATCAGGTCGATCCCTGACTTG
1 GACCGAGAGTTGCGGTAGCAGGACCGGCAACACGC--AGGGGGGACCAGGTCGATCCCCGACTTG
* * * * * *
27106676 CCCATTATGCCTTTTCGGTCGGCTCAACGCCCGCACGCTAGTTTCGTGGGTTGACTAATGCATAC
64 CACATTATGCCTCTCCGGTCGGCTCAACGCCCGCACCCTAGTTTCATGGGTTGACTAAGGCATAC
* ** *
27106741 GGAGTTCATTCCCAGTCTAAG-ATCAGATCG
129 GGAGCTCATTCCCAGTCTAAGCCCCAG-CCG
* * * * * ** * * ** * *
27106771 GACCAAGGGTTGCAGCAGCAGGATCGATAGCATGCAGGGGGTGACTGGGTCGATCCCTGGCTTGC
1 GACCGAGAGTTGCGGTAGCAGGACCGGCAACACGCAGGGGG-GACCAGGTCGATCCCCGACTTGC
* * * * * * * * * * * *
27106836 GCATTCTACCTCTCCAGTCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCCT-AGGCATAC
65 ACATTATGCCTCTCCGGTCGGCTCAACGCCCGCACCCTAGTTTCATGGGTT-GACTAAGGCATAC
*
27106900 GGAGTTCATT-CCATGTCTAAGC
129 GGAGCTCATTCCCA-GTCTAAGC
27106922 ATACAGAGCT
Statistics
Matches: 253, Mismatches: 49, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
158 40 0.16
159 88 0.35
160 122 0.48
161 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GACCGAGAGTTGCGGTAGCAGGACCGGCAACACGCAGGGGGGACCAGGTCGATCCCCGACTTGCA
CATTATGCCTCTCCGGTCGGCTCAACGCCCGCACCCTAGTTTCATGGGTTGACTAAGGCATACGG
AGCTCATTCCCAGTCTAAGCCCCAGCCG
Found at i:27106934 original size:26 final size:26
Alignment explanation
Indices: 27106894--27106946 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27106884 GTTGGCCTAG
* *
27106894 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGCTCATTCCCA-GTCTAA
27106920 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
27106946 G
1 G
27106947 ATTTTGAGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:27107651 original size:26 final size:26
Alignment explanation
Indices: 27107615--27107667 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27107605 GTTGACTTAG
27107615 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
27107641 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
27107667 G
1 G
27107668 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:27108373 original size:160 final size:158
Alignment explanation
Indices: 27108009--27108511 Score: 467
Period size: 160 Copynumber: 3.2 Consensus size: 158
27107999 CCCAGTCTAA
* * * * * * *
27108009 GCATACGGAGTTCATTCCCATTCTAAAATCGGACCGAACCGAAGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * ** * *
27108074 GCACGCA-TGGGGGATCAGGCTGATCCCCGACGTGCGCATTCTGCTTCTCCGATAAGTTGAGCAC
66 GCACGCAGAGGGGGATCAGGCTGATCCCCG-CTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGC
27108138 CCGCACACTT-GTTTCATGGGTTGGCTTAG
130 CCGCACA-TTCGTTTCATGGGTTGGCTTAG
* * ** * * * *
27108167 GCATA-GGCAGCTCATTCCATGTCTAAGCCCTAG-TCGGACTGAGGGTTGTGGCAGCAGGACCGA
1 GCATACGG-AGTTCATTCCAAGTCTAAGATC-AGACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * *
27108230 TAGCATGTAGAGGGGGACCAGGCTGATTCCCCAGCTTGCACATTATGCCTCTTCGACCGGCTCAG
64 CAGCACGCAGAGGGGGATCAGGCTGA-TCCCC-GCTTGCGCATTCTGCCTCTTCGATCGGCTGAG
* * *
27108295 CGCCCGCACATTCATTTCATGGGTTGACTTAT
127 CGCCCGCACATTCGTTTCATGGGTTGGCTTAG
* * **
27108327 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTACAGTTGCAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
27108392 ACACACAGGGGGGGATCAGG-TCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGTG
66 GCACGCAGAGGGGGATCAGGCT-GATCCC-CGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCG
*** *
27108456 CCCGCATGCTCGTTTCGTGGGTTGGCTTAG
129 CCCGCACATTCGTTTCATGGGTTGGCTTAG
*
27108486 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
27108512 ACATACGGAG
Statistics
Matches: 268, Mismatches: 67, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
157 2 0.01
158 49 0.18
159 101 0.38
160 113 0.42
161 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGAGGGGGATCAGGCTGATCCCCGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCC
CGCACATTCGTTTCATGGGTTGGCTTAG
Found at i:27108526 original size:26 final size:26
Alignment explanation
Indices: 27108487--27108536 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
27108477 TTGGCTTAGG
*
27108487 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACGGAGCTCATTGCCA-GTCTAAA
27108513 CATACGGAGCTCATTGCCAGTCTA
1 CATACGGAGCTCATTGCCAGTCTA
27108537 TGATTTTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
CATACGGAGCTCATTGCCAGTCTAAA
Found at i:27109237 original size:26 final size:26
Alignment explanation
Indices: 27109208--27109260 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27109198 GCTAACTTAG
27109208 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
27109234 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27109260 G
1 G
27109261 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27110566 original size:26 final size:26
Alignment explanation
Indices: 27110530--27110582 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27110520 GTTGACTTAG
*
27110530 GCATACAGAGTTCATCCCCAGTTTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
27110556 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27110582 G
1 G
27110583 ATTGGACAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27110817 original size:354 final size:348
Alignment explanation
Indices: 27110161--27111134 Score: 1022
Period size: 354 Copynumber: 2.7 Consensus size: 348
27110151 CGCTCGTTCC
* * * *
27110161 GTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCTTACGGAGTTCATTCTCAGTCTA
1 GTGGGTTGACTTAGGCATA-CGAGTTCATCCCCAGTCTAAGCATA-AGAGTTCATTCCCAGTCTA
* * * **
27110226 AGATCGGATCGGATCGAGGGTTACGGTAGCAGGATCGGTAGCACGCAAGGGGGATCAGGTTGATC
64 AGATTGGA-CGGATCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAA-GGGGATCAGGCCGATC
* * * ** *
27110291 CTCGGCTTACGCATTCCGCCTCTCCGATCGACTGAGAGT-CCGCACACTCGTTTCGTGGGTTGGC
127 CCCGGCTTACGCATTCTGCCTCTCAG-TCGACT--GAGTCCCGCATGCTCGTTTCATGGGTTGGC
* * * * *
27110355 TTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGACTGGGGGTTGTGGCAGCAGGACT
189 TTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAG-CGAACCGAGGGTTGTGGCAGCAAGACC
* * * * * * *
27110420 GGTAGCAGGATCGATAGCACGTATAGGGGGACCGGGCTGATCCCCGGATTGTGCATTATGCCTCT
253 GGCAGCAGGATCGACAGCACGCAAAGGGGGACCGAGCTGATCCCCAGATTATGCATTATGCCTCT
27110485 CCGACCGACTAAGCGCCCGCACGCTTATTTT
318 CCGACCGACTAAGCGCCCGCACGCTTATTTT
*
27110516 GTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTTTAAGCATATAGAGTTCATTCCCAGTCTA
1 GTGGGTTGACTTAGGCATAC-GAGTTCATCCCCAGTCTAAGCATA-AGAGTTCATTCCCAGTCTA
* * * **
27110581 AGATTGGACAAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAAGGGGATTGGGCCGATCC
64 AGATTGGAC-GGATCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAAGGGGATCAGGCCGATCC
* *
27110646 CCGGCTTTCGCATTCTTCCTCTCTAGTCGACTGAGCTCCCGCATGCTCGTTTCATGGGTTGGCTT
128 CCGGCTTACGCATTCTGCCTCTC-AGTCGACTGAG-TCCCGCATGCTCGTTTCATGGGTTGGCTT
** *
27110711 AGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCGAACCGAGGGTTGTGGTAGCAAGACCGG
191 AGGCATACGGAGTACATTCCATGTCTAAGCCCCAG-CGAACCGAGGGTTGTGGCAGCAAGACCGG
** * *
27110776 CAGTGGGATCGACAGCACGCAGAAGGGGG-CCGAGCTGATCCCCAGCTTATGCATTATGCCTCTT
255 CAGCAGGATCGACAGCACGCA-AAGGGGGACCGAGCTGATCCCCAGATTATGCATTATGCCTCTC
** * * * *
27110840 CGGTCGGCTGAGCGCCCGTACGCTTGTTTT
319 CGACCGACTAAGCGCCCGCACGCTTATTTT
* * *
27110870 GTGAGTTGACTTAGGCATACGAAGTTTATCCCC-GATCTAAGCATACGAAGTTCATTCCCAGTCT
1 GTGGGTTGACTTAGGCATACG-AGTTCATCCCCAG-TCTAAGCATAAG-AGTTCATTCCCAGTCT
* * * * * * *
27110934 AAAATTAGACCGGACCGAGGGTTGCGACAGTAGGATCGGTAGCACGCAGGGGGGACCAGGCCGAT
63 AAGATTGGA-CGGATCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA-AGGGGATCAGGCCGAT
** * * * * * * *
27110999 CCCTAGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGTGCTCGCATGC-CTGTTTCATGGTTTGT
126 CCCCGGCTTACGCATTCTGCCTCT-CAGTCGACTGAGT-CCCGCATGCTC-GTTTCATGGGTTGG
* * * * * *
27111063 CTTAGGCATAGGGAGCT-CACTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCATCAGGA
188 CTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAGCGA-ACCGAGGGTTGTGGCAGCAAGA
*
27111127 CCGACAGC
251 CCGGCAGC
27111135 TCGCAGAGGG
Statistics
Matches: 516, Mismatches: 87, Indels: 32
0.81 0.14 0.05
Matches are distributed among these distances:
352 3 0.01
353 4 0.01
354 285 0.55
355 222 0.43
356 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (348 bp):
GTGGGTTGACTTAGGCATACGAGTTCATCCCCAGTCTAAGCATAAGAGTTCATTCCCAGTCTAAG
ATTGGACGGATCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAAGGGGATCAGGCCGATCCCCG
GCTTACGCATTCTGCCTCTCAGTCGACTGAGTCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCA
TACGGAGTACATTCCATGTCTAAGCCCCAGCGAACCGAGGGTTGTGGCAGCAAGACCGGCAGCAG
GATCGACAGCACGCAAAGGGGGACCGAGCTGATCCCCAGATTATGCATTATGCCTCTCCGACCGA
CTAAGCGCCCGCACGCTTATTTT
Found at i:27110934 original size:26 final size:26
Alignment explanation
Indices: 27110884--27110935 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27110874 GTTGACTTAG
* *
27110884 GCATACGAAGTTTATCCCCGATCTAA
1 GCATACGAAGTTCATCCCAGATCTAA
27110910 GCATACGAAGTTCATTCCCAG-TCTAA
1 GCATACGAAGTTCA-TCCCAGATCTAA
27110936 AATTAGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCAGATCTAA
Found at i:27111914 original size:26 final size:26
Alignment explanation
Indices: 27111878--27111929 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27111868 TTGACTTAGC
27111878 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
* *
27111904 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
27111930 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:27114338 original size:26 final size:26
Alignment explanation
Indices: 27114308--27114359 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27114298 GTTGACTTAG
*
27114308 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
*
27114334 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
27114360 AATCAGACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:27114712 original size:26 final size:26
Alignment explanation
Indices: 27114662--27114714 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27114652 GTTGACTTAG
* *
27114662 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
27114688 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27114714 G
1 G
27114715 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27115009 original size:159 final size:157
Alignment explanation
Indices: 27114684--27115031 Score: 437
Period size: 159 Copynumber: 2.2 Consensus size: 157
27114674 CATCCCCATT
* * * *
27114684 CTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAAGATC
1 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATC
* * * * *
27114749 GGCAGCACGTAAGAGGGACCGAACCGATCCTCGGCTTGCGCATTCTGCCTCTCCAATCGGCTCAG
66 GACAGCACGTAAGAGGGAACGAACCGATCCTCAGCTTGCGCATTCTGCCTCTCCAACCGGCTCAA
* *
27114814 CGCCCGCACGCTCGTTTCTTGGGTTGA
131 CGCCAGCACGCTCGTTTCGTGGGTTGA
* ** *
27114841 CTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGTAGCAAGAT
1 C-TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGAT
* * **** * *
27114906 CGACAGCACGTAGGGGGGCAACGGGTTGATCCTCAGCTTGCGCATTCTGCCTCTCCAGCCGGCTG
65 CGACAGCACGTAAGAGGG-AACGAACCGATCCTCAGCTTGCGCATTCTGCCTCTCCAACCGGCTC
*
27114971 AACGCCAGCACGCTCGTTTCGTGGGTTGG
129 AACGCCAGCACGCTCGTTTCGTGGGTTGA
27115000 CTAAGGCATACGGAGTTCATT-CCATGTCTAAG
1 CTAA-GCATACGGAGTTCATTCCCA-GTCTAAG
27115032 CATACGGAGC
Statistics
Matches: 162, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
157 1 0.01
158 75 0.46
159 86 0.53
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (157 bp):
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATC
GACAGCACGTAAGAGGGAACGAACCGATCCTCAGCTTGCGCATTCTGCCTCTCCAACCGGCTCAA
CGCCAGCACGCTCGTTTCGTGGGTTGA
Found at i:27115055 original size:26 final size:26
Alignment explanation
Indices: 27115000--27115057 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
27114990 CGTGGGTTGG
* *
27115000 CTAAGGCATACGGAGTTCATTCCATGT
1 CTAA-GCATACGGAGCTCATTCCATAT
27115027 CTAAGCATACGGAGCTCATTCCCA-AT
1 CTAAGCATACGGAGCTCATT-CCATAT
27115053 CTAAG
1 CTAAG
27115058 ATTTTGAGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 21 0.75
27 7 0.25
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
CTAAGCATACGGAGCTCATTCCATAT
Found at i:27115733 original size:26 final size:25
Alignment explanation
Indices: 27115703--27115754 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
27115693 GTTGACTTAG
27115703 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATA-GGAGTTCATCCCCAGTCTAA
* * *
27115729 GCATATGAGTTCATTCCCAGTTTAA
1 GCATAGGAGTTCATCCCCAGTCTAA
27115754 G
1 G
27115755 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATAGGAGTTCATCCCCAGTCTAA
Found at i:27116083 original size:26 final size:26
Alignment explanation
Indices: 27116054--27116106 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27116044 GTTGACTTAG
27116054 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27116080 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27116106 G
1 G
27116107 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27116390 original size:343 final size:345
Alignment explanation
Indices: 27115672--27116423 Score: 842
Period size: 352 Copynumber: 2.2 Consensus size: 345
27115662 TCAGCTGAGT
* *
27115672 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGA
1 GCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAGGA
* * * * ** * *
27115737 GTTCATTCCCAGTTTAAGATCGGACCGGGTCGAGGGTTGCGGCAATAGGACCGGCAGCATGCAAG
66 GTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAACAATAGGACCGACAGCACGCAAG
* * * **
27115802 GGGGACCGTGCCGATCCCCAGCTTGCGTATTCTGCCTTTCTGACCAGCTGAACGCCTACACGCTT
131 GGGGACCGGGCCGATCCCCAGCTTACGTATTCTGCCTTTCCGACCAGCTGAACGCCTACACGCCC
*
27115867 GTTTCGATTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGT
196 GTTTCGATTGCCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGT
* * **
27115932 GGCAACAAGATCGACAGCGAGATCGGCAGCACACAGAGGGGGATCGGGCTGATCCCTGGCTTACG
261 GG--AC-A-A-C-ACAGCGAGACCGGCAACACACAGAGGGGGATCGGGCTGATCCCCAGCTTACG
* *
27115997 CATTATGCCTCTTCGGTCGGTTGAGC
320 CATTATGCCTCTTCGGTCAGTTCAGC
* * **
27116023 GCCCATATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
1 GCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA-GG
* * *
27116088 AGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCAATAGA-AGGATCGACAGCACGCA
65 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAACA-ATAGGACCGACAGCACGCA
* * * * * ** * * *
27116152 GGGGGGATCGGGCTGATCCCCGGCTTACGTATTTTGCCTTTCCGGTCGGCTGAGCGCCTGCACGC
129 AGGGGGACCGGGCCGATCCCCAGCTTACGTATTCTGCCTTTCCGACCAGCTGAACGCCTACACGC
* * *
27116217 CCGTTTC-ATGGGCTGCCTTAGGCATAGGGAGCTA-ATTCCATGTCTAAGCCCCA-TTCGGACCG
194 CCGTTTCGAT----TGCCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAGCT-GGACCA
*
27116279 AGGGTTGTGG-C-A-AC-G-G-GACCGGCAACACGCAGAGGGGGATCGGG-TCGATCCCCAGCTT
253 AGGGTTGTGGACAACACAGCGAGACCGGCAACACACAGAGGGGGATCGGGCT-GATCCCCAGCTT
** *
27116337 GGGCATTATGCCTTTTCGGTCAGTTCAGC
317 ACGCATTATGCCTCTTCGGTCAGTTCAGC
* * * *
27116366 GCCTACACGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTAAG
1 GCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
27116424 ATTGGATCGG
Statistics
Matches: 338, Mismatches: 54, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
342 1 0.00
343 109 0.32
344 1 0.00
345 1 0.00
346 2 0.01
349 1 0.00
351 59 0.17
352 110 0.33
353 1 0.00
354 1 0.00
355 50 0.15
356 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (345 bp):
GCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAGGA
GTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAACAATAGGACCGACAGCACGCAAG
GGGGACCGGGCCGATCCCCAGCTTACGTATTCTGCCTTTCCGACCAGCTGAACGCCTACACGCCC
GTTTCGATTGCCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTTGT
GGACAACACAGCGAGACCGGCAACACACAGAGGGGGATCGGGCTGATCCCCAGCTTACGCATTAT
GCCTCTTCGGTCAGTTCAGC
Found at i:27117415 original size:158 final size:158
Alignment explanation
Indices: 27117163--27117459 Score: 364
Period size: 158 Copynumber: 1.9 Consensus size: 158
27117153 ATCGGACCGG
* * *
27117163 ATCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGATCGGGCCGATCCCCGACTTGTGC
1 ATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGATCGGGCCGATCCCCGACTTGCGC
* * * * * *
27117228 ATTTAGCCTCTCCAACCGGCTGAGTGCCCGTACGCCCGTTTCCTGGGTTGGCTTAGGCATAGGGA
66 ATTTAGCCTCTCCAACCGGCTCAGCGCCCGCACGCCCATTTCCTGGGTTGACTTAGGCATACGGA
27117293 GCTCATTCCATGTCTAAGCCCTAGCCAA
131 GCTCATTCCATGTCTAAGCCCTAGCCAA
* * *
27117321 ATCGAGGGTTGTGGCAGCGGGATCGGCAGCACGC-GAGGGGGATCGGGCCGATCCCCGGCTTGCG
1 ATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GGGGATCGGGCCGATCCCCGACTTGCG
***** * * * *
27117385 CA-TTATGCCTCTTTGGTCGGCTCAGCGCCCGCACGCTCATTTCGTGGTTTGACTTATGCATACG
65 CATTTA-GCCTCTCCAACCGGCTCAGCGCCCGCACGCCCATTTCCTGGGTTGACTTAGGCATACG
*
27117449 GAGTTCATTCC
129 GAGCTCATTCC
27117460 CAATCTAAGA
Statistics
Matches: 115, Mismatches: 22, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
157 5 0.04
158 110 0.96
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.23
Consensus pattern (158 bp):
ATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGATCGGGCCGATCCCCGACTTGCGC
ATTTAGCCTCTCCAACCGGCTCAGCGCCCGCACGCCCATTTCCTGGGTTGACTTAGGCATACGGA
GCTCATTCCATGTCTAAGCCCTAGCCAA
Found at i:27117557 original size:112 final size:112
Alignment explanation
Indices: 27117360--27117590 Score: 363
Period size: 112 Copynumber: 2.1 Consensus size: 112
27117350 CACGCGAGGG
* * *
27117360 GGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTTGGTCGGCTCAGCGCCCGCACGCTCAT
1 GGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACGCCCGCACGCTCAT
*
27117425 TTCGTGGTTTGACTTATGCATACGGAGTTCATTCCCAATCTAAGATT
66 TTCGTGGTTTGACTTATGCATACGGAGTTCATTACCAATCTAAGATT
* * * * *
27117472 GGATCGGGCCGATCGCTGGCTTGTGCATTATGCCTCTTCGGCCGGTTCAACGCCCGCACGCTCGT
1 GGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACGCCCGCACGCTCAT
* *
27117537 TTTGTGGTTTGACTTATGCATATGGAGTTCATTACCAATCTAAGATT
66 TTCGTGGTTTGACTTATGCATACGGAGTTCATTACCAATCTAAGATT
27117584 GGATCGG
1 GGATCGG
27117591 ACTAAGGGTT
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
112 108 1.00
ACGTcount: A:0.16, C:0.27, G:0.26, T:0.30
Consensus pattern (112 bp):
GGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAACGCCCGCACGCTCAT
TTCGTGGTTTGACTTATGCATACGGAGTTCATTACCAATCTAAGATT
Found at i:27118461 original size:26 final size:26
Alignment explanation
Indices: 27118431--27118486 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
27118421 TTGGTTGACT
*
27118431 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* *
27118457 TAAGCATACAGAGTTCATTCCTAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
27118483 TAAG
1 TAAG
27118487 ATCAAATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:27119320 original size:26 final size:25
Alignment explanation
Indices: 27119280--27119331 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
27119270 GTTGGCTTAG
*
27119280 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCA-GTCTAA
27119306 GCATACGGAGCTCATTCCAGTCTAA
1 GCATACGGAGCTCATTCCAGTCTAA
27119331 G
1 G
27119332 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGCTCATTCCAGTCTAA
Found at i:27119417 original size:11 final size:11
Alignment explanation
Indices: 27119401--27119427 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
27119391 CCCGGGGCAC
27119401 CATCGCCGGAG
1 CATCGCCGGAG
27119412 CATCGCCGGAG
1 CATCGCCGGAG
27119423 CATCG
1 CATCG
27119428 TCGAAGAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.37, G:0.33, T:0.11
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:27120562 original size:26 final size:25
Alignment explanation
Indices: 27120522--27120573 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
27120512 GTTGGCTTAG
*
27120522 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCA-GTCTAA
27120548 GCATACGGAGCTCATTCCAGTCTAA
1 GCATACGGAGCTCATTCCAGTCTAA
27120573 G
1 G
27120574 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGCTCATTCCAGTCTAA
Found at i:27121298 original size:26 final size:26
Alignment explanation
Indices: 27121250--27121302 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27121240 GTTGACTTAG
**
27121250 GCATACAGAGTTCATCCTTAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
* *
27121276 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
27121302 G
1 G
27121303 ATCGAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:27121634 original size:26 final size:26
Alignment explanation
Indices: 27121605--27121657 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27121595 GTTGACTTAG
27121605 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
27121631 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27121657 G
1 G
27121658 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27121838 original size:355 final size:343
Alignment explanation
Indices: 27121178--27121974 Score: 897
Period size: 355 Copynumber: 2.3 Consensus size: 343
27121168 CCACCCGTTC
* * ** **
27121178 GATCCCCGGCTTGCGCATTCTGCCTC-TCTGGTTGGCTGAGCGCCCGCACGCTCGTTTTGTAAGT
1 GATCCCTGGCTTGCGCATTATGCCTCTTC-GGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGT
**
27121242 TGACTTAGGCATAC-AGAGTTCATCCTTAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATC
65 TGACTTAGGCATACGA-AGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATC
* * * *
27121306 GAACTGGATCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGACCCGACCGATCCTCGG
129 GAACTGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCCGACCGAACCCCGG
* * * * * *
27121371 CTTGTGCATTCTACCTTTCTGACCGGCTGAGCGCCCGCACGCTCTTTTTATGGGTTAGCTTAGGC
194 CTTGCGCATTCTACCTTTCAGACCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTAGCTTAGGC
* * * * *
27121436 ATACAGAGTACATTTCATGTCTAAGCCCCAGTCGGACGGATGGTTGTGGCAGCAGGACCAGCAGC
259 ATACAGAGTACATTCCATGTCTAAGCCCCAGCCAGACAGAGGGTTGT-------GG--CAGCA--
* * *
27121501 AGGATCGACAGCACGCAGAGGGGGATCGGGCT
313 A-GATCGACAGCACGCAGAGGGAGACCAGGCT
* * * *
27121533 GATCCCTGGCTTGCGCATTATGCCTCTTCGACCGGCTGAGTGCTCGTACGCTCGTTTTGTGGGTT
1 GATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTT
* * *
27121598 GACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCGG
66 GACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCGA
* * * * * *
27121663 A-TCGGACCGGGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGATCGGGCTGAACCCCGGC
131 ACT-GGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCCGACCGAACCCCGGC
* * *
27121727 TTGCGCATTCTGCCTCTTCAG-CTGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
195 TTGCGCATTCTACCT-TTCAGACCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTAGCTTAGGC
** *
27121791 ATAGGGAGCT-CATTCCATGTCTAAGGCCCAGCCAGACAGAGGGTTGTGGCAGCAAGATCGACAG
259 ATACAGAG-TACATTCCATGTCTAAGCCCCAGCCAGACAGAGGGTTGTGGCAGCAAGATCGACAG
*
27121855 CACGTAGAGGGAGACCAGGCT
323 CACGCAGAGGGAGACCAGGCT
* * * *
27121876 AAT-CCTCGGCTTGCGCATTAAT-CCTCTTCGGCCTGCTCAGCGCCCGCACGCTCGTTTCGTGGG
1 GATCCCT-GGCTTGCGCATT-ATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGG
* * *
27121939 TTGGCTTATGCATACGAAGTTCATTCCCAGTCTAAG
64 TTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAG
27121975 ATCAGACCAG
Statistics
Matches: 378, Mismatches: 57, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
342 3 0.01
343 107 0.28
344 3 0.01
346 5 0.01
348 2 0.01
354 1 0.00
355 249 0.66
356 8 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (343 bp):
GATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTT
GACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCGA
ACTGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCCGACCGAACCCCGGCT
TGCGCATTCTACCTTTCAGACCGGCTGAGCACCCGCACGCCCGTTTCATGGGTTAGCTTAGGCAT
ACAGAGTACATTCCATGTCTAAGCCCCAGCCAGACAGAGGGTTGTGGCAGCAAGATCGACAGCAC
GCAGAGGGAGACCAGGCT
Found at i:27121939 original size:159 final size:158
Alignment explanation
Indices: 27121673--27122124 Score: 387
Period size: 159 Copynumber: 2.8 Consensus size: 158
27121663 ATCGGACCGG
* * * * *
27121673 GGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGATCGGGCTGAACCCCGGCTTGCGCATTCT
1 GGGTTGCGACAGCAAGATCGACAGCACGTAGGGGAGACCAGGCTGAACCCCGGCTTGCGCATTAT
* * *
27121738 GCCTCTTCAGCTGGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCA
66 GCCTCTTCAGCTGGCTCAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGCTCA
27121803 TT-CCATGTCTAAGGCCCAGCCAGACAGA
131 TTCCCA-GTCTAAGGCCCAGCCAGACAGA
* * *
27121831 GGGTTGTGGCAGCAAGATCGACAGCACGTAGAGGGAGACCAGGCT-AATCCTCGGCTTGCGCATT
1 GGGTTGCGACAGCAAGATCGACAGCACGTAG-GGGAGACCAGGCTGAA-CCCCGGCTTGCGCATT
* * * * *
27121895 AAT-CCTCTTCGGCCT-GCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTATGCATACGAAG
64 -ATGCCTCTTCAG-CTGGCTCAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAG
* ** **
27121958 TTCATTCCCAGTCTAA-GATCAGACCAGATTGA
127 CTCATTCCCAGTCTAAGGCCCAG-CCAGACAGA
* * * * * * * * * ** *
27121990 GGGCTGCAATAGTAGGATCGACAGCATGTAAGGGGGGACC-GGGTCGATCCCCAACTTGTGCATT
1 GGGTTGCGACAGCAAGATCGACAGCACGT-AGGGGAGACCAGGCT-GAACCCCGGCTTGCGCATT
* * * * * * * * * *
27122054 CTGCCTC-TCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATACGTAGT
64 ATGCCTCTTCAG-CTGGCTCAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGC
27122118 TCATTCC
128 TCATTCC
27122125 ATGTATAAGC
Statistics
Matches: 239, Mismatches: 44, Indels: 21
0.79 0.14 0.07
Matches are distributed among these distances:
158 42 0.18
159 188 0.79
160 9 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GGGTTGCGACAGCAAGATCGACAGCACGTAGGGGAGACCAGGCTGAACCCCGGCTTGCGCATTAT
GCCTCTTCAGCTGGCTCAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGCTCA
TTCCCAGTCTAAGGCCCAGCCAGACAGA
Found at i:27122873 original size:26 final size:26
Alignment explanation
Indices: 27122828--27122880 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27122818 GTTGACTTAG
*
27122828 GCATACGGAGTTCACCCCTATTCTAA
1 GCATACGGAGTTCACCCCTAGTCTAA
**
27122854 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCACCCCTAGTCTAA
27122880 G
1 G
27122881 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACCCCTAGTCTAA
Found at i:27123232 original size:26 final size:26
Alignment explanation
Indices: 27123194--27123246 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27123184 GTTGACTTAG
*
27123194 GCATACGGGGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27123220 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27123246 G
1 G
27123247 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27123501 original size:368 final size:366
Alignment explanation
Indices: 27122794--27123502 Score: 946
Period size: 368 Copynumber: 1.9 Consensus size: 366
27122784 TGGTAGACTG
* *
27122794 AGTGCCCGCATGCTCGTTTCATGTGTTGACTTAGGCATACGGAGTTCACCCCTATTCTAAGCATA
1 AGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCACCCCTAGTCTAAGCATA
*
27122859 CGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGAAGGATCGACAGCACA
66 CGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGAAGGATCGACAGCACA
* * * * *
27122924 CAGGGGGACGGGTCGATCCCCAGCTTGTGCATTCTGCCTTTTCAATCGGCTGAGCGCCCGCACGC
131 CAGGGGGACGGGTCGATCCACAGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGCGCCCGCACGA
* * * *
27122989 CCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCTCCAGTCAAACCGAGG
196 CCGTTTCATGGGTTGGCTTAGACATACGGAGTACATTCCACGTCTAAGCTCCAGTCAAACAGAGA
* ** * * * *
27123054 GTTGTGGCAGCAGGACTAGTAGCGGGATCGGTAGCACGCAGAGGGGGACAGGGCTGATCCCCGGC
261 GTTGTGGCAGCAGGACCAACAGCGGGATAGATAGCACGCAGAGAGGGACAGGGCTGATCCCCGAC
* *
27123119 TTACGTATTATGCCTCCCCAGCTGACCTTTCTGACCGGCTA
326 GTACGCATTATGCCTCCCCAGCTGACCTTTCTGACCGGCTA
* * *
27123160 AGTGCCCGTATGCTCGTTTTATGGGTTGACTTAGGCATACGGGGTTCATCCCC-AGTCTAAGCAT
1 AGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-CCCCTAGTCTAAGCAT
*
27123224 ACGGAGTTCATTCCTAGTCTAAGATC-GAATCGGATCGAGGGTTGCGATA-ATAGGATCGATAGC
65 ACGGAGTTCATTCCTAGTCTAAGATCAG-ATCGGATCGAGGGTTGCGATAGA-AGGATCGACAGC
* * * * * * *
27123287 ACGCAGGGGGGACCGGG-CTGATCCACGGCTTGCGTATTCTTCCTCTCCGA-CTGGTTGAGTGCC
128 ACACA-GGGGGA-CGGGTC-GATCCACAGCTTGCGCATTCTGCCTCTCCAATC-GGCTGAGCGCC
**
27123350 CGCACGATTGTTTCATGGGTTGGCTTAGACATACGGAGTACATTCCACGTCTAAGC-CTCAGTCA
189 CGCACGACCGTTTCATGGGTTGGCTTAGACATACGGAGTACATTCCACGTCTAAGCTC-CAGTCA
* *
27123414 GACAGAGAGTTGTGGCAGCAGGACCAACAGCGGGATAGATAGCACGTAGAGAGGGATC-GGGCTG
253 AACAGAGAGTTGTGGCAGCAGGACCAACAGCGGGATAGATAGCACGCAGAGAGGGA-CAGGGCTG
* *
27123478 ATCCTCGACGTGCGCATTATGCCTC
317 ATCCCCGACGTACGCATTATGCCTC
27123503 TCCGGTCGGC
Statistics
Matches: 296, Mismatches: 38, Indels: 16
0.85 0.11 0.05
Matches are distributed among these distances:
365 2 0.01
366 115 0.39
367 13 0.04
368 165 0.56
369 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (366 bp):
AGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCACCCCTAGTCTAAGCATA
CGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGAAGGATCGACAGCACA
CAGGGGGACGGGTCGATCCACAGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGCGCCCGCACGA
CCGTTTCATGGGTTGGCTTAGACATACGGAGTACATTCCACGTCTAAGCTCCAGTCAAACAGAGA
GTTGTGGCAGCAGGACCAACAGCGGGATAGATAGCACGCAGAGAGGGACAGGGCTGATCCCCGAC
GTACGCATTATGCCTCCCCAGCTGACCTTTCTGACCGGCTA
Found at i:27123595 original size:171 final size:170
Alignment explanation
Indices: 27123276--27124098 Score: 672
Period size: 171 Copynumber: 4.8 Consensus size: 170
27123266 TGCGATAATA
* * * * * * * * *
27123276 GGATCGATAGCACGCAG-GGGGGACCGGGCTGATCCACGGCTTGCGTATTCTTCCTCTCCGACTG
1 GGATCGACAGCACGCAGAGGGGGACCAGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGGCCG
* * * * * * *
27123340 GTTGAGTGCCCGCACGATTGTTTCATGGGTTGGCTTAGACATACGGAGTACATTCCACGTCTAAG
66 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTACATTCCA-GTCTAAG
* *
27123405 CCTCAGTCAGACAGAGAGTTGTGGCAGCAGGACCAACAGCG
130 CCCCAGTCAGACCGAGAGTTGTGGCAGCAGGACCAACAGCG
* * * * * * * * *
27123446 GGATAGATAGCACGTAGAGAGGGATCGGGCTGATCCTCGACGTGCGCATTATGCCTCTCCGGTCG
1 GGATCGACAGCACGCAGAGGGGGACCAGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGGCCG
* * *
27123511 GCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAG
66 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTACATTCCA-GTCTAAG
* *
27123576 CCCCAGTCGGACCGAGAGTTGTGGCAGCAGGACCGACAGCG
130 CCCCAGTCAGACCGAGAGTTGTGGCAGCAGGACCAACAGCG
** * ** *
27123617 GGATCGACAGCACATAGAGGGGGACCAAGCTGATCCTTGACTTACGCATTATGCCTCT----CCG
1 GGATCGACAGCACGCAGAGGGGGACCAGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGGCCG
* * * * *
27123678 GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTTTAAG
66 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTACAT-TCCAGTCTAAG
** ** * * * * ** *
27123743 CATACGGAGTTCATTCCCAGTGTAAGATCGGACCGAATCGAGTGTTGCAACAGCA
130 C---CCCAG-TCAGACCGAGAGT-TG-T-GG--C--AGC-AG-G-ACCAACAGCG
* * * * *
27123798 AGATCGACAGCACGCA-AGGGGGACC-GGACTGATCCCCGGCTTGCGTATTCTGCCTCTCCAGCC
1 GGATCGACAGCACGCAGAGGGGGACCAGG-CTGATCCCCGACTTGCGCATTATGCCTCTCCGGCC
* * * * * * * * *
27123861 GGTTGAGTGCCTGCACGGTCGTTTCATGGGTTGCCTTAGGCATACGGAGTACCTTCCACTTTTAA
65 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTACATTCCA-GTCTAA
* ** * * **
27123926 GGCCCAGTTGGACCGAGGGTTGTGGTAGCAGGACCGGCAG-G
129 GCCCCAGTCAGACCGAGAGTTGTGGCAGCAGGACCAACAGCG
* * *
27123967 AGGATCGACAGCACGCAGAGGGGGACTAGGCTGATCCCCGACTTGCGCATTAGGCCTCTCCGACC
1 -GGATCGACAGCACGCAGAGGGGGACCAGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGGCC
* * *
27124032 GGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
65 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTACAT-TCCAGTCTAA
27124097 GC
129 GC
27124099 ATATGGAGTT
Statistics
Matches: 509, Mismatches: 118, Indels: 51
0.75 0.17 0.08
Matches are distributed among these distances:
167 56 0.11
168 3 0.01
170 37 0.07
171 273 0.54
172 8 0.02
173 3 0.01
174 2 0.00
176 1 0.00
177 2 0.00
178 3 0.01
179 4 0.01
180 40 0.08
181 22 0.04
183 3 0.01
184 52 0.10
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (170 bp):
GGATCGACAGCACGCAGAGGGGGACCAGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGGCCG
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTACATTCCAGTCTAAGC
CCCAGTCAGACCGAGAGTTGTGGCAGCAGGACCAACAGCG
Found at i:27123752 original size:26 final size:26
Alignment explanation
Indices: 27123716--27123768 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27123706 GTTGACTTAG
* *
27123716 GCATATGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTGTAA
*
27123742 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTGTAA
27123768 G
1 G
27123769 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTGTAA
Found at i:27124107 original size:26 final size:26
Alignment explanation
Indices: 27124071--27124123 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27124061 GTTGACTTAG
*
27124071 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
27124097 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
27124123 G
1 G
27124124 ATCGGAACAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:27124240 original size:355 final size:351
Alignment explanation
Indices: 27123488--27124333 Score: 963
Period size: 355 Copynumber: 2.4 Consensus size: 351
27123478 ATCCTCGACG
* * * * * * *
27123488 TGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
1 TGCGCATTCTACCTCTCCAGCCGACTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
27123553 ACGGAGTACATTCCATGTCTAAGCCCCAGTCGGACCGAGAGTTGTGGCAGCAGGACCGACAGCGG
66 ACGGAGTACATTCCATGTCTAAGCCCCAGTCGGACCGAGAGTTGTGGCAGCAGGACCGACAGCGG
* ** *
27123618 GATCGACAGCACATAGAGGGGGACCAAGCTGATCCTTGACTTACGCATTATGCCTCTCCGGCTGA
131 GATCGACAGCACACAGAGGGGGACCAAGCTGATCCCCGACTTACGCATTAGGCCTCTCCGGCTGA
* * *
27123683 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTTTAAGCATAC
196 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
* * * * * * *
27123748 GGAGTTCATTCCCAGTGTAAGATCGGACCGAATCGAGTGTTGCAACAGCAAGATCGACAGCACGC
261 GGAGTTCATTCCCAATCTAAGATCGGACAGAACCAAGGGTTGCAACAACAAGATCGACAGCACGC
27123813 AAGGGGGACCGGACTGATCCCCGGCT
326 AAGGGGGACCGGACTGATCCCCGGCT
* * ** * * *
27123839 TGCGTATTCTGCCTCTCCAGCCGGTTGAGTGCCTGCACGGTCGTTTCATGGGTTGCCTTAGGCAT
1 TGCGCATTCTACCTCTCCAGCCGACTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
* * * * * * *
27123904 ACGGAGTACCTTCCACT-TTTAAGGCCCAGTTGGACCGAGGGTTGTGGTAGCAGGACCGGCAG-G
66 ACGGAGTACATTCCA-TGTCTAAGCCCCAGTCGGACCGAGAGTTGTGGCAGCAGGACCGACAGCG
* * * *
27123967 AGGATCGACAGCACGCAGAGGGGGACTAGGCTGATCCCCGACTTGCGCATTAGGCCTCTCCGACC
130 -GGATCGACAGCACACAGAGGGGGACCAAGCTGATCCCCGACTTACGCATTAGGCCTCT----CC
*
27124032 GGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
190 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* **
27124097 GCATATGGAGTTCATTCCCAATCTAAGATCGGAACAG-ACCAAGGGTTGTGACAAC-AGAATCGA
255 GCATACGGAGTTCATTCCCAATCTAAGATCGG-ACAGAACCAAGGGTTGCAACAACAAG-ATCGA
* * * * *
27124160 CAGCATGCAGGGGGGACTGG-GTCGATCCTCGGCT
318 CAGCACGCAAGGGGGACCGGACT-GATCCCCGGCT
* * * * * *
27124194 TGTGCATTCTACCTTTTC-GATCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGTA
1 TGCGCATTCTACCTCTCCAG-CCGACTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCA
* * * * * * *
27124258 TAGGGAGCT-CATTCCTTGTCTAAG-CCCAGCCAGACCGAGGGTTGTGGCGGCAGGACC-AGTAG
65 TACGGAG-TACATTCCATGTCTAAGCCCCAGTCGGACCGAGAGTTGTGGCAGCAGGACCGA-CAG
*
27124320 CGGGATCGGCAGCA
128 CGGGATCGACAGCA
27124334 TGCAGAGAGG
Statistics
Matches: 412, Mismatches: 69, Indels: 25
0.81 0.14 0.05
Matches are distributed among these distances:
350 1 0.00
351 158 0.38
352 1 0.00
354 46 0.11
355 202 0.49
356 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (351 bp):
TGCGCATTCTACCTCTCCAGCCGACTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
ACGGAGTACATTCCATGTCTAAGCCCCAGTCGGACCGAGAGTTGTGGCAGCAGGACCGACAGCGG
GATCGACAGCACACAGAGGGGGACCAAGCTGATCCCCGACTTACGCATTAGGCCTCTCCGGCTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
GGAGTTCATTCCCAATCTAAGATCGGACAGAACCAAGGGTTGCAACAACAAGATCGACAGCACGC
AAGGGGGACCGGACTGATCCCCGGCT
Found at i:27125133 original size:26 final size:26
Alignment explanation
Indices: 27125096--27125148 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27125086 GTTGACTTAG
*
27125096 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
27125122 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27125148 G
1 G
27125149 ATCAGACATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27125494 original size:26 final size:26
Alignment explanation
Indices: 27125464--27125516 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27125454 CTTGACTTAG
*
27125464 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
27125490 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27125516 G
1 G
27125517 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27125865 original size:25 final size:26
Alignment explanation
Indices: 27125818--27125869 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
27125808 GTTAACTTAG
*
27125818 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
* *
27125844 GCATAC-GAATTCATTCCTAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
27125869 G
1 G
27125870 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:27126196 original size:158 final size:158
Alignment explanation
Indices: 27125841--27126343 Score: 392
Period size: 158 Copynumber: 3.2 Consensus size: 158
27125831 ATCCCCAGTC
* ** * * * * *
27125841 TAAGCATAC-GAATTCATTCC-TAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATC
1 TAAGCATACAGAGTTCATTCCAT-GTCTAAGATTGGACCAGACTGAGGGTTGAGGCAGTAGGATT
* * * * * * * ** * *
27125904 GACAGCACGTAGGGGGGACCGGGCCGATTCCCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAG
65 GACAGCACGTAGGGGGGACTGGGTCGATCCCCAGCTTGAGCATTATGCCTCTCCGATCGGCTCAG
* * * * * *
27125969 CGCTCGTACGCCCCTTTCGTGGGTTGGCT
130 CGCCCGCACGCTCGTTTCATGGGTTGACT
* ** * * **** * *
27125998 TAGGCATAGGGAGCTCATTCCATATCTAAG-CCCCAGCCAGA-TCGAGGGTTGCAGG-AG-CGGG
1 TAAGCATACAGAGTTCATTCCATGTCTAAGATTGGA-CCAGACT-GAGGGTTG-AGGCAGTAGGA
* * * *
27126059 TTCGGCAGCATGTAGAGGGGGATTGGGTCGATCCCCAGCTTGAGCATTATGCCTCTTCGATCGGC
63 TT-GACAGCACGTAG-GGGGGACTGGGTCGATCCCCAGCTTGAGCATTATGCCTCTCCGATCGGC
* * * * *
27126124 TCAGTGCCCGTATGTTTGTTTCATGGGTTGACT
126 TCAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* * *
27126157 TATGC-TTCAGAGTTCATTCCCA-GTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGTAGGATT
1 TAAGCATACAGAGTTCATT-CCATGTCTAAGATTGGACCAGACTGAGGGTTGAGGCAGTAGGATT
** * * *
27126220 GACAGCACGTAGGGGGGACTGGGTCGATCCCTGGCTTGAGCATTCTGCCTCTCCGATCGGTTGAG
65 GACAGCACGTAGGGGGGACTGGGTCGATCCCCAGCTTGAGCATTATGCCTCTCCGATCGGCTCAG
* *
27126285 CGCCCGCACGCTCGTTTCGTGGGTTGGCT
130 CGCCCGCACGCTCGTTTCATGGGTTGACT
27126314 TAAGCATACAGAGTTCATTCCATGTCTAAG
1 TAAGCATACAGAGTTCATTCCATGTCTAAG
27126344 CATACGGACC
Statistics
Matches: 264, Mismatches: 68, Indels: 27
0.74 0.19 0.08
Matches are distributed among these distances:
157 89 0.34
158 99 0.38
159 76 0.29
ACGTcount: A:0.19, C:0.25, G:0.31, T:0.25
Consensus pattern (158 bp):
TAAGCATACAGAGTTCATTCCATGTCTAAGATTGGACCAGACTGAGGGTTGAGGCAGTAGGATTG
ACAGCACGTAGGGGGGACTGGGTCGATCCCCAGCTTGAGCATTATGCCTCTCCGATCGGCTCAGC
GCCCGCACGCTCGTTTCATGGGTTGACT
Found at i:27127088 original size:26 final size:26
Alignment explanation
Indices: 27127050--27127102 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27127040 GTTCACTTAG
27127050 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27127076 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27127102 G
1 G
27127103 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27127707 original size:355 final size:353
Alignment explanation
Indices: 27127012--27128731 Score: 1406
Period size: 368 Copynumber: 4.8 Consensus size: 353
27127002 TCTATGGTCG
* *
27127012 GCTGAGCGCCCGCACACTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
* * * * * *
27127077 CATACGGTGTTCATTCCCAGTCTAAGATCGAACCGGATCAAGGGTTGCGGTAGTAGGATCGACAG
66 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTACGGCAGCAGGATCGACAG
* * * * * * **
27127142 CAC--ACAGGAGGATCGAACCGATCCTCGGCTTGCACATTCTGCTTTTCCGGCTGGCTGAGCGTT
131 CACGTAGAGG-GGATCGAGCCGATCCCCGGCTTGCACATTCTGCCTTTCCGGCTGACTGAGTGCC
* *
27127205 GGCACGCTCGTTTCATGGGTTGGCCTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCGG
195 CG-ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCGG
* * * * * ** *
27127270 ACCGAGAGTTGTGGTAGCAAGACTGGCTGCGGGATCAACAGCACGCAGAGGGGGACCAGGCTGAT
259 ACCGAGGGTTGTGGCAGCAAGACCGACAGCGGGATCAGTAGCACGCAGA-GGGGACCAGGCTTAT
* *
27127335 CCCCGGCTTACGACTTATGCCTCTCCGGCCA
323 CCCCAGCTTATGACTTATGCCTCTCCGGCCA
* * ** * * * *
27127366 GTTGAGCGCCCGCATACTTGTTTTGTGGGTTGATTTAGGCATACTGAGTTCATCCCCAGTCT-AG
1 GCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
** ** * *
27127430 ACATATGGAGTTCATTCCCAGTCTAAGATCGGATTGGATCAAGAGTTATGGCAGCAGGATCGACA
66 -CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTACGGCAGCAGGATCGACA
* *
27127495 GCACGTAGAGGGGA-CGAGGTCGATCCCCGGCTTGCACATTCTGCCTTTCTGGCTGACTGAGTGC
130 GCACGTAGAGGGGATCGA-GCCGATCCCCGGCTTGCACATTCTGCCTTTCCGGCTGACTGAGTGC
* *
27127559 CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGAACATTCCCCATCTAAGCCCCAGTCG
194 CCG-ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCG
** * * *
27127624 GACTAAGGGTTGTGGCAGCAAGACCGACAGCGGGATCAGTAGCACGTAGAGGCGGACCGGGCTTC
258 GACCGAGGGTTGTGGCAGCAAGACCGACAGCGGGATCAGTAGCACGCAGAGG-GGACCAGGCTTA
*
27127689 TCCTCAGCTTATGACTTATGCTTCTCCTGCCGGCCTCTCCGA
322 TCCCCAGCTTATGACTTATGC--CT-CT-CCGG-----CC-A
* * * *
27127731 CCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCT
1 ---GCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCT
* * * * * * * *
27127796 AAGCATATAGAGTTTATTCCCAGTCTAAGATTGG-TCGGACCGAGGGTTACGCCAGCATGATCGA
63 AAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTACGGCAGCAGGATCGA
* * * * * * *
27127860 CAGCACGCATGA-GGGATCAAGCCGATCCCTGGCTTGCGCATTCTGTCTCTCCGGCCGACTGAGC
128 CAGCACGTA-GAGGGGATCGAGCCGATCCCCGGCTTGCACATTCTGCCTTTCCGGCTGACTGAG-
* * * *
27127924 T-CCCAGATGCTTGTTTCGTGGGTTAGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAG
191 TGCCC-GACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAG
* *
27127988 -CTGGACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGGTAGCACGCAGAGGGGACCAGGC
255 TC-GGACCGAGGGTTGTGGCAGCAAGACCGACAGCGGGATCAGTAGCACGCAGAGGGGACCAGGC
* * ** *
27128052 TTATCCCCAGCTTGTG-CATTATACCTCTCCGATCG
319 TTATCCCCAGCTTATGAC-TTATGCCTCTCCGGCCA
* * * *
27128087 GCTGAGCACCCGCACAGTCATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCCAATCTAAG
1 GCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
* * * * * *
27128152 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTCCGGTAGCAGGATTGGCAG
66 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTACGGCAGCAGGATCGACAG
* * * * * * *** * * * * *
27128217 CACGTAGGGGGGA-CTGGGCTGATCTCTGGCTTACGTGTTCTACCTCTCCAGCCGACTGAGCGCC
131 CACGTAGAGGGGATC-GAGCCGATCCCCGGCTTGCACATTCTGCCTTTCCGGCTGACTGAGTGCC
* * * * ** *
27128281 CGAATGCCCATTT--TGTTGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCA-ACT
195 CG-ACGCTCGTTTCATG-GGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTC-
* * * * * * * * *
27128343 AGATCGAGGGTTGTGGCAACAGGACCGGCAGCGGGGATC-GACAACATGCAGAGGGGGATCAGGC
257 GGACCGAGGGTTGTGGCAGCAAGACCGACAGC-GGGATCAG-TAGCACGCAGA-GGGGACCAGGC
* * * * * *
27128407 TGATCCTCGGATTACG-CATTATGCCTCTCCAGTCGGCTTTTTTGGGCG
319 TTATCCCCAGCTTATGAC-TTATGCCTCT-C---CGGC---------CA
* * ** * * * *
27128455 GCTGAGTGCCCGCACGCTTGTTTTGTGAGTTGACTTAGTCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
* * ** * * ** **
27128520 AATAC-GAAGTTCATTCCTAGTCTAAGATTAGATCGGATCGAGGGTTGTGGCAGCAGGATCGGTA
66 CATACAG-AGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTACGGCAGCAGGATCGACA
* * * ** * * * *
27128584 GCACGCAGAGGGGATCGGGTCGATCATCTGCTTGCGCATTCTGCCTCTCCGG-TCGACTGAGCGC
130 GCACGTAGAGGGGATCGAGCCGATCCCCGGCTTGCACATTCTGCCTTTCCGGCT-GACTGAGTGC
* * * * ** *
27128648 CCGCACGCCCATTTCCTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCTAGTC
194 CCG-ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCACATCTAAGCCCCAGTC
27128712 GGACCGAGGGTTGTGGCAGC
257 GGACCGAGGGTTGTGGCAGC
27128732 GGGACCGTCA
Statistics
Matches: 1114, Mismatches: 197, Indels: 95
0.79 0.14 0.07
Matches are distributed among these distances:
352 2 0.00
353 159 0.14
354 210 0.19
355 198 0.18
356 5 0.00
357 3 0.00
358 2 0.00
359 6 0.01
362 3 0.00
363 2 0.00
364 4 0.00
365 2 0.00
366 27 0.02
367 175 0.16
368 254 0.23
369 58 0.05
370 4 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (353 bp):
GCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTACGGCAGCAGGATCGACAG
CACGTAGAGGGGATCGAGCCGATCCCCGGCTTGCACATTCTGCCTTTCCGGCTGACTGAGTGCCC
GACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCGGAC
CGAGGGTTGTGGCAGCAAGACCGACAGCGGGATCAGTAGCACGCAGAGGGGACCAGGCTTATCCC
CAGCTTATGACTTATGCCTCTCCGGCCA
Found at i:27127808 original size:26 final size:26
Alignment explanation
Indices: 27127772--27127824 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27127762 GTTGACTTAG
27127772 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * * *
27127798 GCATATAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
27127824 G
1 G
27127825 ATTGGTCGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:27128152 original size:26 final size:26
Alignment explanation
Indices: 27128122--27128177 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
27128112 TGGGTTGACT
*
27128122 TAAGCATACGGAGTTCATCCCCAATC
1 TAAGCATACAGAGTTCATCCCCAATC
* *
27128148 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAATC
27128174 TAAG
1 TAAG
27128178 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAATC
Found at i:27128531 original size:26 final size:26
Alignment explanation
Indices: 27128495--27128546 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27128485 TGACTTAGTC
*
27128495 ATACGGAGTTCATCCCCAGTCTAAGA
1 ATACGAAGTTCATCCCCAGTCTAAGA
* *
27128521 ATACGAAGTTCATTCCTAGTCTAAGA
1 ATACGAAGTTCATCCCCAGTCTAAGA
27128547 TTAGATCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGA
Found at i:27128704 original size:722 final size:718
Alignment explanation
Indices: 27127010--27128743 Score: 1781
Period size: 722 Copynumber: 2.4 Consensus size: 718
27127000 CCTCTATGGT
* * * *
27127010 CGGCTGAGCGCCCGCACACTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * * * *
27127075 AGCATACGGTGTTCATTCCCAGTCTAAGATCGAACCGGATCAAGGGTTGCGGTAGTAGGATCGAC
66 AGAATAC-GAGTTCATTCCCAGTCTAAGATTG-ATCGGATCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * *
27127140 AGCACACAG-GAGGATCGAACCGATCCTCGGCTTGCACATTCTGCTTTTCCGGCTGGCTGAGCGT
129 AGCACGCAGAGGGGATCGAGCCGAT-CTCTGCTTGCGCATTCTGCCTCTCCGGC-GACTGAGCGC
** *
27127204 TGGCACGCTCGTTTCATGGGTTGGCCTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCG
192 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCG
* * * * * *
27127269 GACCGAGAGTTGTGGTAGCAAGACTGGCTGCGGGATCAACAGCACGCAGAGGGGGACCAGGCTGA
257 GACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCAACAGCACGCAGAGGGGGACCAGGCTGA
* * * * * * ** **
27127334 TCCCCGGCTTACGACTTATGCCTCTCCGGCCAGTTGAGCGCCCGCATACTTGTTTTGTGGGTTGA
322 TCCCCAGCTTACGACTTATACCTCTCCGACCAGCTGAGCACCCGCACACTCATTTCATGGGTTGA
* * * * ** * *
27127399 TTTAGGCATACTGAGTTCATCCCCAGTCTAGACATATGGAGTTCATTCCCAGTCTAAGATCGGAT
387 CTTAAGCATACGGAGTTCATCCCCAATCTAGACATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * *
27127464 TGGATCAAGAGTTATGGCAGCAGGATCGACAGCACGTAGAGGGGACGAGGTCGATCCCCGGCTTG
452 CGGATCAAGAGTTACGGCAGCAGGATCGACAGCACGTAGAGGGGACGAGGTCGATCCCCGGCTTA
* * ** * * * * *
27127529 CACATTCTGCCTTTCTGGCTGACTGAGTGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATAC
517 CACATTCTACCTCTCCAGCCGACTGAGCGCCCGAACGCCCATTT-ATGGGTTGGCTTAGGCATAC
* * * *
27127594 GGAGAACATTCCCCATCTAAGCCCCAGTCGGACTAAGGGTTGTGGCAGCAAGACCGACAGCGGGA
581 GGAGAACATTCCACATCTAAGCCCCACTCAGACTAAGGGTTGTGGCAACAAGACCGACAGCGGGA
* * * * ** * * * *
27127659 TCAGTAGCACGTAGAGGCGGACCGGGCTTCTCCTCAGCTTATGACTTATGCTTCTCCTGCCGGCC
646 TCAGCAACACGCAGAGGCGGACCAGGCTGATCCTCAGATTACGACTTATGCCTCTCCAGCCGGCC
27127724 TCTCCGAC
711 TCTCCGAC
* *
27127732 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTA
1 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * * * *
27127797 AGCATATA-GAGTTTATTCCCAGTCTAAGATTGGTCGGACCGAGGGTTACGCCAGCATGATCGAC
66 AG-A-ATACGAGTTCATTCCCAGTCTAAGATTGATCGGATCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
27127861 AGCACGCATGA-GGGATCAAGCCGATCCCTGGCTTGCGCATTCTGTCTCTCCGGCCGACTGAGCT
129 AGCACGCA-GAGGGGATCGAGCCGATCTCT-GCTTGCGCATTCTGCCTCTCCGG-CGACTGAGCG
* * * *
27127925 CCCAG-ATGCTTGTTTCGTGGGTTAGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAG-
191 CCC-GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGT
***
27127988 CTGGACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCGGTAGCACGCAGA-GGGGACCAGGC
255 C-GGACCGAGGGTTGTGGCAGCAGGACCGACAGCGGGATCAACAGCACGCAGAGGGGGACCAGGC
* ** * * *
27128052 TTATCCCCAGCTTGTG-CATTATACCTCTCCGATCGGCTGAGCACCCGCACAGTCATTTCATGGG
319 TGATCCCCAGCTTACGAC-TTATACCTCTCCGACCAGCTGAGCACCCGCACACTCATTTCATGGG
27128116 TTGACTTAAGCATACGGAGTTCATCCCCAATCTA-AGCATACAGAGTTCATTCCCAGTCTAAGAT
383 TTGACTTAAGCATACGGAGTTCATCCCCAATCTAGA-CATACAGAGTTCATTCCCAGTCTAAGAT
* * * * * * * *
27128180 CAGACCGGATCGAGGGTTCCGGTAGCAGGATTGGCAGCACGTAGGGGGGACTG-GG-CTGATCTC
447 CAGACCGGATCAAGAGTTACGGCAGCAGGATCGACAGCACGTAGAGGGGAC-GAGGTC-GATCCC
* *** * *
27128243 TGGCTTACGTGTTCTACCTCTCCAGCCGACTGAGCGCCCGAATGCCCATTT-TGTTGTTGGCTTA
510 CGGCTTACACATTCTACCTCTCCAGCCGACTGAGCGCCCGAACGCCCATTTATG-GGTTGGCTTA
* ** * *
27128307 GGCATACGGAGTACATTCCATGTCTAAGCCCCAACT-AGA-TCGAGGGTTGTGGCAACAGGACCG
574 GGCATACGGAGAACATTCCACATCTAAGCCCC-ACTCAGACT-AAGGGTTGTGGCAACAAGACCG
* * * * *
27128370 GCAGCGGGGATC-GACAACATGCAGAGGGGGATCAGGCTGATCCTCGGATTACG-CATTATGCCT
637 ACAGC-GGGATCAG-CAACACGCAGAGGCGGACCAGGCTGATCCTCAGATTACGAC-TTATGCCT
* * * ** **
27128433 CTCCAGTCGGCTTTTTTGGG
699 CTCCAGCCGGCCTCTCCGAC
* * * *
27128453 CGGCTGAGTGCCCGCACGCTTGTTTTGTGAGTTGACTTAGTCATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * **
27128518 AGAATACGAAGTTCATTCCTAGTCTAAGATTAGATCGGATCGAGGGTTGTGGCAGCAGGATCGGT
66 AGAATACG-AGTTCATTCCCAGTCTAAGATT-GATCGGATCGAGGGTTGCGGCAGCAGGATCGAC
* *
27128583 AGCACGCAGAGGGGATCGGGTCGATCATCTGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGC
129 AGCACGCAGAGGGGATCGAGCCGATC-TCTGCTTGCGCATTCTGCCTCTCCGG-CGACTGAGCGC
* * * * ** *
27128648 CCGCACGCCCATTTCCTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAAGCCCTAGTC
192 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCACATCTAAGCCCCAGTC
* *
27128712 GGACCGAGGGTTGTGGCAGCGGGACCGTCAGC
256 GGACCGAGGGTTGTGGCAGCAGGACCGACAGC
27128744 ACGCAGAAGG
Statistics
Matches: 822, Mismatches: 164, Indels: 52
0.79 0.16 0.05
Matches are distributed among these distances:
719 6 0.01
720 69 0.08
721 367 0.45
722 371 0.45
723 6 0.01
724 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (718 bp):
CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGAATACGAGTTCATTCCCAGTCTAAGATTGATCGGATCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGAGGGGATCGAGCCGATCTCTGCTTGCGCATTCTGCCTCTCCGGCGACTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAGTCGGACC
GAGGGTTGTGGCAGCAGGACCGACAGCGGGATCAACAGCACGCAGAGGGGGACCAGGCTGATCCC
CAGCTTACGACTTATACCTCTCCGACCAGCTGAGCACCCGCACACTCATTTCATGGGTTGACTTA
AGCATACGGAGTTCATCCCCAATCTAGACATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGA
TCAAGAGTTACGGCAGCAGGATCGACAGCACGTAGAGGGGACGAGGTCGATCCCCGGCTTACACA
TTCTACCTCTCCAGCCGACTGAGCGCCCGAACGCCCATTTATGGGTTGGCTTAGGCATACGGAGA
ACATTCCACATCTAAGCCCCACTCAGACTAAGGGTTGTGGCAACAAGACCGACAGCGGGATCAGC
AACACGCAGAGGCGGACCAGGCTGATCCTCAGATTACGACTTATGCCTCTCCAGCCGGCCTCTCC
GAC
Found at i:27128846 original size:159 final size:158
Alignment explanation
Indices: 27128521--27128861 Score: 373
Period size: 159 Copynumber: 2.2 Consensus size: 158
27128511 CAGTCTAAGA
* * * ** * *
27128521 ATACGAAGTTCATTCCTAGTCTAAG-ATTAGATCGGATCGAGGGTTGTGGCAGCAGGATCGGTAG
1 ATACGGAGCTCATTCCCAGTCTAAGCCCTAG-TCGGACCGAGGGTTGTGGCAGCAGGATCCGTAG
* * * * * * * **
27128585 CACGCAGAGGGGATCGGGTCGATCATCTGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCC
65 CACGCAGAGGGGACCGAGCCGATCATCGGCTTGCACATTATGCCTCTCCGATCGACCCAGCGCCC
27128650 GCACGCCCATTTCCTGGGTTGGCTTAGGC
130 GCACGCCCATTTCCTGGGTTGGCTTAGGC
* *
27128679 ATAGGGAGCTCATT-CCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGCAGCGGGA-CCGTCA
1 ATACGGAGCTCATTCCCA-GTCTAAGCCCTAGTCGGACCGAGGGTTGTGGCAGCAGGATCCGT-A
* * * *
27128742 GCACGCAGAAGGGGACCGAGCCGATCCTCGGCTTGCACATTATGCCTCTTCGATCGGCCCAGTGC
64 GCACGCAG-AGGGGACCGAGCCGATCATCGGCTTGCACATTATGCCTCTCCGATCGACCCAGCGC
* * * * *
27128807 CCGCATGCTCGTTTCGTGGGTTGGCTTATGC
128 CCGCACGCCCATTTCCTGGGTTGGCTTAGGC
*
27128838 GTACGGAGCTCATTCCCAGTCTAA
1 ATACGGAGCTCATTCCCAGTCTAA
27128862 TATCAGACCA
Statistics
Matches: 149, Mismatches: 29, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
157 5 0.03
158 51 0.34
159 90 0.60
160 3 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
ATACGGAGCTCATTCCCAGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGCAGCAGGATCCGTAGC
ACGCAGAGGGGACCGAGCCGATCATCGGCTTGCACATTATGCCTCTCCGATCGACCCAGCGCCCG
CACGCCCATTTCCTGGGTTGGCTTAGGC
Found at i:27128880 original size:159 final size:158
Alignment explanation
Indices: 27128558--27128917 Score: 366
Period size: 159 Copynumber: 2.3 Consensus size: 158
27128548 TAGATCGGAT
* * * * * *
27128558 CGAGGGTTGTGGCAGCAGGATCGGT-AGCACGCAGAGGGGATCGGGTCGATCATCTGCTTGCGCA
1 CGAGGGTTGTGGCAGCAGGA-CCGTCAGCACGCAGAGGGGACCGAGCCGATCATCGGCTTGCACA
* * ** *
27128622 TTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCCCATTTCCTGGGTTGGCTTAGGCATAGGGAG
65 TTATGCCTCTCCGATCGACCCAGCGCCCGCACGCCCATTTCCTGGGTTGGCTTAGGCATACGGAG
* * *
27128687 CTCATTCCATGTCTAAGCCCTAGTCGGAC
130 CTCATTCCATGTCTAAGACCTAGCCAGAC
* *
27128716 CGAGGGTTGTGGCAGCGGGACCGTCAGCACGCAGAAGGGGACCGAGCCGATCCTCGGCTTGCACA
1 CGAGGGTTGTGGCAGCAGGACCGTCAGCACGCAG-AGGGGACCGAGCCGATCATCGGCTTGCACA
* * * * * * * * *
27128781 TTATGCCTCTTCGATCGGCCCAGTGCCCGCATGCTCGTTTCGTGGGTTGGCTTATGCGTACGGAG
65 TTATGCCTCTCCGATCGACCCAGCGCCCGCACGCCCATTTCCTGGGTTGGCTTAGGCATACGGAG
* *
27128846 CTCATTCCCA-GTCTAATATC-AGACCAGAC
130 CTCATT-CCATGTCTAAGACCTAG-CCAGAC
* * * * * *
27128875 TGAGGGTTTTGGTAGCAAGATCGACAGCACGCAGAGGGGACCG
1 CGAGGGTTGTGGCAGCAGGACCGTCAGCACGCAGAGGGGACCG
27128918 GGTCAATCCC
Statistics
Matches: 164, Mismatches: 34, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
157 3 0.02
158 39 0.24
159 119 0.73
160 3 0.02
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (158 bp):
CGAGGGTTGTGGCAGCAGGACCGTCAGCACGCAGAGGGGACCGAGCCGATCATCGGCTTGCACAT
TATGCCTCTCCGATCGACCCAGCGCCCGCACGCCCATTTCCTGGGTTGGCTTAGGCATACGGAGC
TCATTCCATGTCTAAGACCTAGCCAGAC
Found at i:27129044 original size:26 final size:26
Alignment explanation
Indices: 27128994--27129046 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27128984 GTTAGCTTAG
* *
27128994 GCATACGGAGTTCATTCCATCTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
27129020 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
27129046 G
1 G
27129047 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:27129895 original size:26 final size:26
Alignment explanation
Indices: 27129865--27129915 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
27129855 TGACTTAGGC
27129865 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTCTAAGT
*
27129891 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
27129916 ATCGAAGTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGT
Found at i:27131456 original size:26 final size:26
Alignment explanation
Indices: 27131420--27131470 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
27131410 TGACTTAGGC
*
27131420 ATACGGAGTTCATCCCCAGTCTAAGG
1 ATACGAAGTTCATCCCCAGTCTAAGG
* *
27131446 ATACGAAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
27131471 ATTAGACTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGG
Found at i:27131815 original size:26 final size:26
Alignment explanation
Indices: 27131785--27131837 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27131775 GTTGACTTAG
27131785 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27131811 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27131837 G
1 G
27131838 ATCTGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27132044 original size:368 final size:367
Alignment explanation
Indices: 27131385--27132179 Score: 1020
Period size: 368 Copynumber: 2.2 Consensus size: 367
27131375 GGTCGGCTGG
* * * * *
27131385 GCGCCTGCACGTTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGGATAC
1 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
* * * * *
27131450 GAAGTTCATTCCTAGTCTAAGATTAGACTAGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
66 GAAGTTCATTCCCAGTCTAAGATTAGACCAGATCGAGGGTTGCGACAGCAGGATCGACAACACGC
* * * * *
27131515 TGAGGGGTCGAGCCGATCCTCGACTTGCACGTTCTGCCTCTCCGGCCAACTGAGCGCCCGCACGC
131 TGAGGGGTCGAGCCAATCCCCGACTTGCACATTCTACCTCTCCGGCCAACTGAGCACCCGCACGC
* * * *
27131580 TCATTTTGTGGGTTGGCTTAGGCATAATGAGTACATTCCACGTCTAAGCCTCAGTCGGACTGAGG
196 TCATTTCGTGGGTTGGCTTAGGCATAAGGAGTACATTCCACGTCTAAGCCTCAGTCAGACCGAGG
* * ** *
27131645 GTTGTGGCAGCAGGACCTACAGCGAGATCGGTAGCAAGTAGAGGGGGACTGGGCTGATCCTCGAC
261 GTTATGGCAGCAGGACCGACAGCGAGATCGGTAGCAAGTAGAGGGGGACCAGACTGATCCTCGAC
* * *
27131710 TTGTGCATTATGCCTCTCTGATTGGCCTCTCTGATCAATTAA
326 TTGCGCATTATGCCTCTCTGATCGGCCTCTCCGATCAATTAA
* *
27131752 GCGCTCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
1 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
* * ** * *
27131817 GGAGTTCATTCCCAGTCTAAGATCT-GACCGGATCGAGGGTTGCGACATTAGGATTGGCAACACG
66 GAAGTTCATTCCCAGTCTAAGAT-TAGACCAGATCGAGGGTTGCGACAGCAGGATCGACAACACG
* * * * *
27131881 CATG-GGGGATCGAGCCAATCCCCGGCTTGGACATTCTACCTCTCTGGTCGACTGAGCACCCGCA
130 C-TGAGGGG-TCGAGCCAATCCCCGACTTGCACATTCTACCTCTCCGGCCAACTGAGCACCCGCA
* *
27131945 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCC-CTAGTCAGACC
193 CGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGTACATTCCACGTCTAAGCCTC-AGTCAGACC
* * * * * *
27132009 GAGGGTTATGGTAGTAGGATCGACAGTGGGATCGGTAGCACGTAGAGGGGGACCAGACTGATCCT
257 GAGGGTTATGGCAGCAGGACCGACAGCGAGATCGGTAGCAAGTAGAGGGGGACCAGACTGATCCT
* * * ** *
27132074 TGACTTGCGCATTATGCCTCTTTGATCGGCCTCTCCGGTCGGTTGA
322 CGACTTGCGCATTATGCCTCTCTGATCGGCCTCTCCGATCAATTAA
* * *
27132120 GCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAG
1 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
27132180 ATCAGACCGA
Statistics
Matches: 365, Mismatches: 59, Indels: 7
0.85 0.14 0.02
Matches are distributed among these distances:
367 115 0.32
368 250 0.68
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (367 bp):
GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC
GAAGTTCATTCCCAGTCTAAGATTAGACCAGATCGAGGGTTGCGACAGCAGGATCGACAACACGC
TGAGGGGTCGAGCCAATCCCCGACTTGCACATTCTACCTCTCCGGCCAACTGAGCACCCGCACGC
TCATTTCGTGGGTTGGCTTAGGCATAAGGAGTACATTCCACGTCTAAGCCTCAGTCAGACCGAGG
GTTATGGCAGCAGGACCGACAGCGAGATCGGTAGCAAGTAGAGGGGGACCAGACTGATCCTCGAC
TTGCGCATTATGCCTCTCTGATCGGCCTCTCCGATCAATTAA
Found at i:27132451 original size:342 final size:342
Alignment explanation
Indices: 27131811--27132521 Score: 903
Period size: 342 Copynumber: 2.1 Consensus size: 342
27131801 CCCAGTCTAA
* * * * * * *
27131811 GCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGATCGAGGGTTGCGACATTAGGATTGGCA
1 GCATACGGAGTTCATCCCCAGTCTAAGATCAGACCGAATCAAGGGTTACGACAGTAGGATCGGCA
* * *
27131876 ACACGCATGGGGGATCGAGCCAATCCCCGGCTTGGACATTCTACCTCTCTGGTCGACTGAGCACC
66 ACACACATGGGGGACCGAGCCAATCCCCGGCTTGGACATTCTACCTCTCCGGTCGACTGAGCACC
* * * *
27131941 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCTAGTCAG
131 CGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGTCAG
* * * * ** *
27132006 ACCGAGGGTTATGGTAGTAGGATCGACAGTGGGATCGGTAGCACGTAGAGGGGGACCAGACTGAT
196 ACCGAGGGTTATGGCAGCAGGACCGACAGTGGGATCGGCAGCACACAGAGGGGAACCAGACTGAT
* * ** ** *
27132071 CCTTGACTTGCGCATTATGCCTCTTTGATCGGCCTCTCCGGTCGGTTGAGCGCCCGCATGCTCGT
261 CCCTGACTTGCACATTATGCCTCTCCGATCAACCTCTCCGGTCGATTGAGCGCCCGCATGCTCGT
27132136 TTCGTGGGTTGACTTAG
326 TTCGTGGGTTGACTTAG
* * *
27132153 GCATATGGAGTTCATCCCCAGTCTAAGATCAGACCGAATCAAGGGTTACGATAGTAGGATCGGTA
1 GCATACGGAGTTCATCCCCAGTCTAAGATCAGACCGAATCAAGGGTTACGACAGTAGGATCGGCA
* * * *
27132218 GCACACA-GTGGGGACC-AGGCCGATCCTCGGCTTGCG-CATTCTACCTCTCCGG-CTGGCTGAG
66 ACACACATG-GGGGACCGA-GCCAATCCCCGGCTTG-GACATTCTACCTCTCCGGTC-GACTGAG
** *
27132279 TGCCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTATGCCCCAG
127 CACCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAG
* * **
27132344 T-AGGACCGAGGGTTGTGGCAGCAGTACC-AGCAGTGGGATCGGCAGCACACAGAGGGGAACTGG
192 TCA-GACCGAGGGTTATGGCAGCAGGACCGA-CAGTGGGATCGGCAGCACACAGAGGGGAACCAG
* * *
27132407 GCTGATCCCTGACTTGCACATTATGCCTCTCCGGTCAACCTCTCCGGTCGATTGAGTGCCCGCAT
255 ACTGATCCCTGACTTGCACATTATGCCTCTCCGATCAACCTCTCCGGTCGATTGAGCGCCCGCAT
27132472 GCTCGTTTCGTGGGTTGACTTAG
320 GCTCGTTTCGTGGGTTGACTTAG
* *
27132495 GTATACGGAGTTCATCCACAGTCTAAG
1 GCATACGGAGTTCATCCCCAGTCTAAG
27132522 CATACGAAGT
Statistics
Matches: 315, Mismatches: 48, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
341 5 0.02
342 309 0.98
343 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (342 bp):
GCATACGGAGTTCATCCCCAGTCTAAGATCAGACCGAATCAAGGGTTACGACAGTAGGATCGGCA
ACACACATGGGGGACCGAGCCAATCCCCGGCTTGGACATTCTACCTCTCCGGTCGACTGAGCACC
CGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTACATTCCACGTCTAAGCCCCAGTCAG
ACCGAGGGTTATGGCAGCAGGACCGACAGTGGGATCGGCAGCACACAGAGGGGAACCAGACTGAT
CCCTGACTTGCACATTATGCCTCTCCGATCAACCTCTCCGGTCGATTGAGCGCCCGCATGCTCGT
TTCGTGGGTTGACTTAG
Found at i:27132533 original size:26 final size:26
Alignment explanation
Indices: 27132497--27132547 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27132487 TGACTTAGGT
*
27132497 ATACGGAGTTCA-TCCACAGTCTAAGC
1 ATACGAAGTTCATTCC-CAGTCTAAGC
27132523 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
27132548 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:27132877 original size:185 final size:183
Alignment explanation
Indices: 27132445--27132889 Score: 507
Period size: 183 Copynumber: 2.4 Consensus size: 183
27132435 CTCCGGTCAA
* * * * * *
27132445 CCTCTCCGGTCGATTGAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCAT
1 CCTCTCCGATCGACTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
* * *
27132510 CCACAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACAGCAG
66 CCCCAGTCTAAGCATACGAAGTTAATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAG
*** ** * * * *
27132575 CAAGATTGGCAGCATGCAGGGGGACCGGGCCGATCCTCAGCTTGTGCATTTTG
131 CAAGATCAACAGCACACAGGGGGACCGAGCCGAACCTCAGCTTGCGCATTATG
* * *
27132628 CCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-AGAGTTCA
1 CCTCTCCGATCGACTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCA
* * * * * *
27132692 TCCCCAGTCTAAGCGTACGGAGTTAATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCA
65 TCCCCAGTCTAAGCATACGAAGTTAATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCA
* * **
27132757 GCAGGATCAACAGCACACAGAGAGGGACCGAGCTGAACCTTGGCTTGCGCATTATG
130 GCAAGATCAACAGCACACAG-G-GGGACCGAGCCGAACCTCAGCTTGCGCATTATG
** * * *
27132813 CCTCTTTGATCTG-CTCAGTGCCCGCACGCTCGTTTCGGGGGTTAACTTATGCATACGAAGTTCA
1 CCTCTCCGATC-GACTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA
*
27132877 TTCCCAGTCTAAG
65 TCCCCAGTCTAAG
27132890 ATCGGATCAG
Statistics
Matches: 219, Mismatches: 38, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
183 126 0.58
184 1 0.00
185 90 0.41
186 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.25
Consensus pattern (183 bp):
CCTCTCCGATCGACTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
CCCCAGTCTAAGCATACGAAGTTAATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGCAG
CAAGATCAACAGCACACAGGGGGACCGAGCCGAACCTCAGCTTGCGCATTATG
Found at i:27133223 original size:26 final size:26
Alignment explanation
Indices: 27133193--27133245 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27133183 GTTGACTTAG
27133193 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
27133219 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
27133245 G
1 G
27133246 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:27133310 original size:698 final size:700
Alignment explanation
Indices: 27132122--27133403 Score: 1568
Period size: 698 Copynumber: 1.8 Consensus size: 700
27132112 TCGGTTGAGC
* * * * *
27132122 GCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGATCAGAC
1 GCCCGCACGCTCGTTTCGGGGGTTAACTTAGGCATACGAAGTTCATCCCCAGTCTAAGATCAGAC
* * ** * * * * *
27132187 CGAATCAAGGGTTACGATAGTAGGATCGGTAGCACACAGTGGGGACCAGGCCGATCCTCGGCTTG
66 AGAACCAAGGGTTACGATAGTAGGATCGACACCACACAGGGGGGACCAGGCCGATCCCCGACTTA
**
27132252 CGCATTCTACCTCTCCGGCTGGCTGAGTGCCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATAC
131 CGCATTCTACCTCTCCGGCTGGCTGAGCCCCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATAC
* * * *
27132317 GAAGTACATTCCACGTCTATGCCCCAGTAGGACCGAGGGTTGTGGCAGCAGTACCAGCAGTGGGA
196 GAAGTACATTCCACGTCTAAGCCCCAGCAGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCGGGA
* *
27132382 TCGGCAGCACACAGAGGGGAACTGGGCTGATCCCTGACTTGCACATTATGCCTCTCCGGTCAACC
261 TCAGCAGCACACAGAGGGGAACTGGGCTGATCCCAGACTTGCACATTATGCCTCTCCGG--AA--
* * * *
27132447 TCTCCGGTCGATTGAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATCC
322 ---CC-G-CGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
* *
27132512 ACAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACAGCAGCA
382 ACAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTAAGGGTTACAGCAGCA
* * * * * *
27132577 AGATTGGCAGCATGCAGGGGGACCGGGCCGATCCTCAGCTTGTGCATTTTGCCTCTCCGATC-GA
447 AGATCGGCAACACGCAGGGGGACCGGG-CGATCCTCAGATTGCGCATTTTGCCTCTCCGACCAG-
* * * *
27132641 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA-TCCCCAGTCTAAG
510 CTGAGCGCCCACACGCTCGTTTCATGGGTCGACTTAGGCATACAGAGTACATTCCACA-TCTAAG
27132705 CGTACGGAGTTAATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCAACAG
574 CGTACGGAGTTAATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCAACAG
27132770 CACACAGAGAGGGACCGAGCTGAACCTTGGCTTGCGCATTATGCCTCTTTGATCTGCTCAGT
639 CACACAGAGAGGGACCGAGCTGAACCTTGGCTTGCGCATTATGCCTCTTTGATCTGCTCAGT
* * *
27132832 GCCCGCACGCTCGTTTCGGGGGTTAACTTATGCATACGAAGTTCATTCCCAGTCTAAGATCGGAT
1 GCCCGCACGCTCGTTTCGGGGGTTAACTTAGGCATACGAAGTTCATCCCCAGTCTAAGATCAGA-
* * ** * * *
27132897 CAG-ACCGAGGGTTACGGTAGTAGGATCGACACCACGTAGGGGGGGATCGGGTCGATCCCCGACT
65 CAGAACCAAGGGTTACGATAGTAGGATCGACACCACACA-GGGGGGACCAGGCCGATCCCCGACT
* * * * * *
27132961 TACGTATTCTGCCTCTCCAG-TCGGCTGAGCCCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCA
129 TACGCATTCTACCTCTCCGGCT-GGCTGAGCCCCCGAACGCTCATTTCGTGGGTTGGCTTAGGCA
* * *
27133025 TACGGAGTACATTCCACGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCAGGACC-GACAGC
193 TACGAAGTACATTCCACGTCTAAGCCCCAGCAGGACCGAGGGTTGTGGCAGCAGGACCAG-CAGC
* * * *
27133089 GGGATCAGTAGCACGCAGAGGGGGACCT-GGCTGATCCCCAG-CTTGCGCATTATGCCTCTCC-G
257 GGGATCAGCAGCACACAGA-GGGGAACTGGGCTGAT-CCCAGACTTGCACATTATGCCTCTCCGG
* *
27133151 -A-C-CGACTGAGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA
320 AACCGCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCACA
* * * *
27133213 ATCTAAGCATACTG-AGTTCATTCCCAGTCTAAGATCGGATCGGA-TCAAGGGTTAC-GATAGTA
385 ATCTAAGCATAC-GAAGTTCATTCCCAGTCTAAGATCGGACCAGACT-AAGGGTTACAG-CAGCA
* * * *
27133275 AGATCGGCAACACGTAGGGGGACCAGAGG-GATCCTCGGATTGCGTATTTTGCCTCTTCGACCAG
447 AGATCGGCAACACGCAGGGGGACC-G-GGCGATCCTCAGATTGCGCATTTTGCCTCTCCGACCAG
* * * * *
27133339 TTGAGCGCCCACATGCTTGTTTCTTGGGTCGACTTAGGCATATAGAGTACATTCCACATCTAAGC
510 CTGAGCGCCCACACGCTCGTTTCATGGGTCGACTTAGGCATACAGAGTACATTCCACATCTAAGC
27133404 CCCAGCCGGA
Statistics
Matches: 483, Mismatches: 76, Indels: 38
0.81 0.13 0.06
Matches are distributed among these distances:
697 2 0.00
698 201 0.42
699 8 0.02
700 2 0.00
701 1 0.00
707 1 0.00
710 86 0.18
711 171 0.35
712 11 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (700 bp):
GCCCGCACGCTCGTTTCGGGGGTTAACTTAGGCATACGAAGTTCATCCCCAGTCTAAGATCAGAC
AGAACCAAGGGTTACGATAGTAGGATCGACACCACACAGGGGGGACCAGGCCGATCCCCGACTTA
CGCATTCTACCTCTCCGGCTGGCTGAGCCCCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATAC
GAAGTACATTCCACGTCTAAGCCCCAGCAGGACCGAGGGTTGTGGCAGCAGGACCAGCAGCGGGA
TCAGCAGCACACAGAGGGGAACTGGGCTGATCCCAGACTTGCACATTATGCCTCTCCGGAACCGC
GACTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCACAATCTAA
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTAAGGGTTACAGCAGCAAGATCGGCA
ACACGCAGGGGGACCGGGCGATCCTCAGATTGCGCATTTTGCCTCTCCGACCAGCTGAGCGCCCA
CACGCTCGTTTCATGGGTCGACTTAGGCATACAGAGTACATTCCACATCTAAGCGTACGGAGTTA
ATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCAGGATCAACAGCACACAGAGAGG
GACCGAGCTGAACCTTGGCTTGCGCATTATGCCTCTTTGATCTGCTCAGT
Found at i:27133740 original size:26 final size:26
Alignment explanation
Indices: 27133701--27133753 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27133691 TGATCCTTGG
27133701 GCATACGGAATTCATCCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
* *
27133727 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
27133753 G
1 G
27133754 ATCAGACCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:27135330 original size:26 final size:26
Alignment explanation
Indices: 27135300--27135351 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
27135290 GTTGACTTAG
27135300 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*** *
27135326 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
27135352 CATTGGACTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:27135794 original size:355 final size:353
Alignment explanation
Indices: 27134860--27135892 Score: 1177
Period size: 368 Copynumber: 2.9 Consensus size: 353
27134850 CCACCTGTTC
* ** * * * * * * *
27134860 GATCCCCGGCTTACGCATCCTGTCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGATT
1 GATCCTCGGCTTACGCATTATGCCTCTCTGGTCGACTGAGTGCCCGTACGCTCGTTTCATGGGTT
* * *
27134925 GACTTAGGCATACGGAGTTCATCCCCAATCTAAGTATAAGAAGTTCATTCCCAGTCTAAGATTGG
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATTGG
* * * * *
27134990 ATTGGATCGAGGTTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCACGGCT
131 ACTGGATCAAGGGTTGCGGCAGCAGGATCGA-AGCACGCAGGGGGGACCGGGCCGATCCACAGCT
* * * * *
27135055 TGCGCATTCTGCCTCTCCGGCTGACTGAGCACCCGCACGCTCATTTCGTGGCTTGGCTTAGGCAT
195 TGTGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
** * * * * * *
27135120 ACGGAGTACATTCCACATCTAATCCCCAACCGAATCAAGGGTTGTGGTAGCAGGACTGGAATCGA
260 ACGGAGTACATTCCATGTCTAAGCCCCAGCCG-ACCAAGGGTTGTGGCAGCAGGACCGGAAGCGA
* ** ** *
27135185 GATCGACAGCACGTAGCGGGGGATCGGGTT
324 GATCGACAGCACGCAAAGACGGATCGGGCT
27135215 GATCCTCGGCTTACGCATTATGCCTCTCCGGTCGACCTCGTCGATCGGTTGAGTGCCCGTACGCT
1 GATCCTCGGCTTACGCATTATGCCTCT-C--T-G-----GTCGA-C---TGAGTGCCCGTACGCT
** *
27135280 CGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCC
53 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTCCC
* ** *
27135345 AGTCTAACATTGGACTGGATCAAGGGTTGCGGCAGCAGGATCGGAAGCAAACAGGGGGGATCGGG
118 AGTCTAAGATTGGACTGGATCAAGGGTTGCGGCAGCAGGATC-GAAGCACGCAGGGGGGACCGGG
* * * *
27135410 CCGATCCCCAGCTTGTGCATTCTGCCTCTCCAACCGATTGAGCGCCCGCACACTCATTTCGTGGG
182 CCGATCCACAGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGG
* *
27135475 TTGGCTTAGGCACACGGAGTACATTCCATGTCTAAGCCCTAGCCAGACCAAGGGTTGTGGCAGCA
247 TTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCC-GACCAAGGGTTGTGGCAGCA
* * ** *
27135540 GGACCGGTAGCGGGATCGGTAGCATGCAAAGACGGATCGGGCT
311 GGACCGGAAGCGAGATCGACAGCACGCAAAGACGGATCGGGCT
*
27135583 GATCCTCGGCTTACGCATTATGCCTCTCTGGTCGACTGAGTGCCCGTATGCTCGTTTCATGGGTT
1 GATCCTCGGCTTACGCATTATGCCTCTCTGGTCGACTGAGTGCCCGTACGCTCGTTTCATGGGTT
* * *
27135648 GACTTAGGCATACGGAGTTCATCCCCAGGCTAAGCATATGAAGTTCATTCCCTGTCTAAGATCGG
66 GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATTGG
** * * * * * *
27135713 ACCAGACCAAGGGTTACGACAGCAGGATCGATAGCACGTAGGGGGGACCGGGTCGATCCTCAGCT
131 ACTGGATCAAGGGTTGCGGCAGCAGGATCGA-AGCACGCAGGGGGGACCGGGCCGATCCACAGCT
* * * * * * *
27135778 TGTGCATTCTGCCTCTCCGATCGGCTGAGCGCTCGCATGCCCGTTTCATGGGTTGGCTTAGGCAT
195 TGTGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT
* * * *
27135843 AGGGAGCT-CATTCCATGTTTAAGCCCCAGTCGGACCGAGGGTTGTGGCAG
260 ACGGAG-TACATTCCATGTCTAAGCCCCAG-CCGACCAAGGGTTGTGGCAG
27135893 TGGGACTGGC
Statistics
Matches: 570, Mismatches: 90, Indels: 36
0.82 0.13 0.05
Matches are distributed among these distances:
354 2 0.00
355 255 0.45
356 3 0.01
358 2 0.00
359 6 0.01
364 5 0.01
365 2 0.00
367 1 0.00
368 291 0.51
369 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (353 bp):
GATCCTCGGCTTACGCATTATGCCTCTCTGGTCGACTGAGTGCCCGTACGCTCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATTGG
ACTGGATCAAGGGTTGCGGCAGCAGGATCGAAGCACGCAGGGGGGACCGGGCCGATCCACAGCTT
GTGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
CGGAGTACATTCCATGTCTAAGCCCCAGCCGACCAAGGGTTGTGGCAGCAGGACCGGAAGCGAGA
TCGACAGCACGCAAAGACGGATCGGGCT
Found at i:27136161 original size:157 final size:156
Alignment explanation
Indices: 27135689--27136180 Score: 476
Period size: 158 Copynumber: 3.1 Consensus size: 156
27135679 AAGCATATGA
* * ** * * *
27135689 AGTTCATTCCC-TGTCTAAGATCGGACCAGACCAAGGGTTACGACAGCAGGATCGATAGCACGTA
1 AGTTCATTCCCATGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCAGGATTGACAGCACGTA
* * * *
27135753 GGGGGGACCGGGTCGATCCTCAGCTTGTGCATTCTGCCTCTCCGATCGGCTGAGCGCTCG-CATG
66 GGGGGGACTGGGTCGATCCCCAGCTTGT-CATTATGCCTCT-CGATCGGCTGAGCGCCCGCCA--
* * *
27135817 CCCGTTTCATGGGTTGGCTTAGGCATAGGG
127 CTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * ** * ** * ** * *
27135847 AGCTCATT-CCATGTTTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGGGACTGGCAGCACGTA
1 AGTTCATTCCCATGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCAGGATTGACAGCACGTA
* * * * *
27135911 GAGGGGGA-TCGGGCCAATTCCCAGCTTGTGCATTATGCCTCTCGATCGGCTCAGCGCCCGCACG
66 G-GGGGGACT-GGGTCGATCCCCAGCTTGT-CATTATGCCTCTCGATCGGCTGAGCGCCCGC-CA
* *
27135975 CTCGTTTCGTGGGTTGACTTACGCATACGG
127 CTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * *
27136005 AGTTCATTCCCA-GTCTAAGATTGAACCAGACTGAGGGTTGTGGCAGCAGGATTGACAGCACGCA
1 AGTTCATTCCCATGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCAGGATTGACAGCACGTA
* *
27136069 GGGGGAGACTGGGTCGATCCCCAGCTTGT-TTTTTGCCTCTCTGATCGGCTGAGCGCCCGTCCAC
66 GGGGG-GACTGGGTCGATCCCCAGCTTGTCATTATGCCTCTC-GATCGGCTGAGCGCCCG-CCAC
*
27136133 TCGTTTCGTGGGTCGGCTTAGGCATACGG
128 TCGTTTCGTGGGTTGGCTTAGGCATACGG
*
27136162 AGTTC-TTTCCATGTCTAAG
1 AGTTCATTCCCATGTCTAAG
27136181 CATATGAAGC
Statistics
Matches: 264, Mismatches: 59, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
156 15 0.06
157 62 0.23
158 149 0.56
159 37 0.14
160 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (156 bp):
AGTTCATTCCCATGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCAGGATTGACAGCACGTA
GGGGGGACTGGGTCGATCCCCAGCTTGTCATTATGCCTCTCGATCGGCTGAGCGCCCGCCACTCG
TTTCGTGGGTTGGCTTAGGCATACGG
Found at i:27136916 original size:26 final size:26
Alignment explanation
Indices: 27136886--27136938 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27136876 GTTGACTTAG
27136886 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
27136912 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27136938 G
1 G
27136939 ATCAAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27137540 original size:368 final size:365
Alignment explanation
Indices: 27136840--27137852 Score: 1300
Period size: 368 Copynumber: 2.8 Consensus size: 365
27136830 ATCCTGTCTT
* * *
27136840 TCTGGTCGGCTGAGCGCCTGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCC
1 TCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCC
* * *
27136905 AGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAAATCAGATCGAGGGTTGCGATAGCAGG
66 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AATCAGATCGAGGGTTGCGACAGTAGG
* * * * * * * *
27136970 ATCGACAGCATGCAGAGGGGATCAGGTCGATCCCCGGCTTGCACATGCTACCTCTCCGACCGGCT
130 ATCGATAGCACGCAG-GGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG-GCGGCT
* * * * *
27137035 AAGCGCCCGTACACTCATTTCATGGGTTAGCTTAGGCATACGGAGTACATTCCACATCTAAG-CC
193 GAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCC
* * * * * * *
27137099 CTAGCTGGATCTAGGGTTGTGGTAGTAGTACCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACT
258 CAATC-GGATCAAGGGTTGTGGTAGTAGGACCGACAGCAGGATCGGCAGCACGCAGAAGAGGACT
* * *
27137164 GAGCTGATCCCCGACTTACGCATTATGCCTTTCGGGTCGGGCTC
322 GAGCTGATCCCCAACTTACGCATTATGCCTCTCAGGTCGGGCTC
* * * * **
27137208 TCTGATCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCC
1 TCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCC
* *
27137273 AGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGGTTGCGACAGTAG
66 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AATCAGATCGA-GGGTTGCGACAGTAG
* * * *
27137338 GATCGGTAGGACACAGGGGGACCAGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCT
129 GATCGATAGCACGCAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG-CGGCT
*
27137403 GAGCGCCCGCACACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCC
193 GAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCC
* * *
27137468 CAATCGGACCGAGGGTTGTGGTAGTAGGACCGACAGCAGGATCGGCAGCATGCAGAAGAGGACT-
258 CAATCGGATCAAGGGTTGTGGTAGTAGGACCGACAGCAGGATCGGCAGCACGCAGAAGAGGACTG
* *
27137532 AGGCTGATCCCCAACTTACGTATTATGCCTCTCAGGTCGGGCTT
323 A-GCTGATCCCCAACTTACGCATTATGCCTCTCAGGTCGGGCTC
* * *
27137576 TCCGGTCGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCCTCCCC
1 TCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCC
* * *
27137641 AGTCTTAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAATCGAAGGTTGCGACAGTAGG
66 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-ATCAGATCGAGGGTTGCGACAGTAGG
* * * *
27137706 ATCGATAGCACGCAGGGGGGACCAAGCCGA-CCCTCGACTTGCGCATTCTGCCTCTCTGGCGGGA
130 ATCGATAGCACGCA-GGGGGACCAGGCCGATCCC-CGGCTTGCGCATTCTGCCTCTCCGGC-GGC
* * * *
27137770 TGAGCACCCGCAC-GTCGGTTTCGTGGGTTGGCTTAGGTATAGGGAGCT-CATTCCATC-TCTAA
192 TGAGCGCCCGCACACTC-GTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCA-CATCTAA
27137832 GCCCCAATCGGATCAAGGGTT
254 GCCCCAATCGGATCAAGGGTT
27137853 TTGGCAGCGG
Statistics
Matches: 558, Mismatches: 76, Indels: 22
0.85 0.12 0.03
Matches are distributed among these distances:
367 34 0.06
368 493 0.88
369 31 0.06
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (365 bp):
TCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCC
AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAATCAGATCGAGGGTTGCGACAGTAGGA
TCGATAGCACGCAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCGGCTGAG
CGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACATCTAAGCCCCAA
TCGGATCAAGGGTTGTGGTAGTAGGACCGACAGCAGGATCGGCAGCACGCAGAAGAGGACTGAGC
TGATCCCCAACTTACGCATTATGCCTCTCAGGTCGGGCTC
Found at i:27137658 original size:26 final size:27
Alignment explanation
Indices: 27137617--27137671 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
27137607 CATGGGTTGA
*
27137617 CTTAGGCATACAGAGTTCCTCCCCAGT
1 CTTAGGCATACAGAGTTCATCCCCAGT
* *
27137644 CTTA-GCATACGGAGTTCATTCCCAGT
1 CTTAGGCATACAGAGTTCATCCCCAGT
27137670 CT
1 CT
27137672 AAGATCAGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.22, C:0.31, G:0.18, T:0.29
Consensus pattern (27 bp):
CTTAGGCATACAGAGTTCATCCCCAGT
Found at i:27138848 original size:26 final size:26
Alignment explanation
Indices: 27138818--27138870 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27138808 GTTGACTTAG
27138818 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
27138844 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27138870 G
1 G
27138871 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27139221 original size:26 final size:26
Alignment explanation
Indices: 27139171--27139223 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27139161 GTTGAGTTAG
* *
27139171 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTACTCTAA
27139197 GCATACAGAGTTCATTCCC-ACTCTAA
1 GCATACAGAGTTCA-TCCCTACTCTAA
27139223 G
1 G
27139224 ATCCGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTACTCTAA
Found at i:27140420 original size:26 final size:26
Alignment explanation
Indices: 27140386--27140436 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
27140376 TGACTTAGGG
*
27140386 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAGTCTAAGC
*
27140412 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
27140437 ATCGGATCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGC
Found at i:27141233 original size:356 final size:344
Alignment explanation
Indices: 27140344--27141464 Score: 1209
Period size: 356 Copynumber: 3.2 Consensus size: 344
27140334 TCTCTCTGGT
** * *
27140344 CGGCTGAGCGCTAGCACGCTCGTTTCATGGGTTGACTTAGGGATACGGAGTTCATCCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTA
* * * * *
27140409 AGCATACAGAGTTCATTCCCAGTCTAAGATCGGATC-ATATCAAGGGTTGCAGCAGCAGGATCGG
66 AGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGA-ATCGAGGGTTGCGGCAGCAGGATCGA
* * * *
27140473 TAGCACGCAGGAGGGATCGGG-TCGATCTTCGACTTGCACATTCTGCCTCTCTGGCCGACTGAGC
130 CAGCACGCAGGAGGGATCGGGCT-GATCCTCGACTTGCGCATTCTGCCTCTCTGGTCGACTGAGC
*
27140537 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGT
194 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGC
* * * *
27140602 CGGACCAAGGGTTGTGACAGCAAGACCAACATCGGGATAGGCAGCATGCATAGGGGGATCGGGTT
259 CGGACCGAGGGTTGTG---GC-AG-------T-GGGATAGGCAGCACGTATAGGGGGATC-GGCT
*
27140667 GATCCCTGACCTGCGCATTATGCCTC-TC-CGAC
311 GATCCCTGACTTGCGCATTATGCCTCTTCGCGAC
* * * * ** * *
27140699 CGGTTGAGCGCCCGTATGCTCATTTTGTGGGTTGACTTAGGCATACAGAGATCATCCCTAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTA
* * *
27140764 AGCATACAAAGTTCATTCCCAGTCAAAGATCGGACCGGATTGAGGGTTGCGGCAGCAGGATCGAC
66 AGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTGCGGCAGCAGGATCGAC
* * * *
27140829 AGCACGCAGGATGGATCGGGCCGATCC-CTGGC-TGACGCATTATGCCTCTCTGGTCGACTGAGC
131 AGCACGCAGGAGGGATCGGGCTGATCCTC-GACTTG-CGCATTCTGCCTCTCTGGTCGACTGAGC
* ** *
27140892 ACCCGCACGCTCGTTTAATGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGACCCAGC
194 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGC
* *
27140957 CGGACCGAGGGTTGTGGCAGTAGGAT-GGACAGCACGTATAGGGGGATCGGACTGATCCCCGACT
259 CGGACCGAGGGTTGTGGCAGTGGGATAGG-CAGCACGTATAGGGGGATCGG-CTGATCCCTGACT
*
27141021 TGCGCATTATGCCTCTTCGACTGGCCTCTTCC
322 TGCGCATTATGCCTCTTCG-C--G------AC
* ** * *
27141053 GCTGGCTGAGCGCCCGCACACTCGTTTCATGATTTGACTTAGGCATATAGAGTTCACCCCCAGTC
1 -C-GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
* * *
27141118 TAAGTATACAAAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCAGGATCG
64 TAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTGCGGCAGCAGGATCG
* * * * * *
27141183 ACAGCATGCAGGGGGGACCGGGCTGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGC
129 ACAGCACGCAGGAGGGATCGGGCTGATCCTCGACTTGCGCATTCTGCCTCTCTGGTCGACTGAGC
* * * * * *
27141248 GCCCACATGCCCGTTTCGTGGGTTGGTTTAGGCATAGGGAGCT-CATTCCATGTTTAAGCCCCAG
194 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCATGTCTAAGCCCCAG
* * * * * * *
27141312 CCAGACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGTAGAGGGGAATCGGGTCGATCCCTGGCT
258 CCGGACCGAGGGTTGTGGCAGTGGGATAGGCAGCACGTATAGGGGGATCGGCT-GATCCCTGACT
* *
27141377 TGTGCATTATGCCTCTTCG-G-T
322 TGCGCATTATGCCTCTTCGCGAC
* * * * *
27141398 CGGCTCAGTGCCCGTACGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTA
27141463 AG
66 AG
27141465 ATTGGACCGA
Statistics
Matches: 642, Mismatches: 100, Indels: 60
0.80 0.12 0.07
Matches are distributed among these distances:
342 4 0.01
343 102 0.16
344 4 0.01
346 1 0.00
348 1 0.00
351 2 0.00
352 3 0.00
354 4 0.01
355 235 0.37
356 280 0.44
357 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (344 bp):
CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTA
AGCATACAAAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTGCGGCAGCAGGATCGAC
AGCACGCAGGAGGGATCGGGCTGATCCTCGACTTGCGCATTCTGCCTCTCTGGTCGACTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCG
GACCGAGGGTTGTGGCAGTGGGATAGGCAGCACGTATAGGGGGATCGGCTGATCCCTGACTTGCG
CATTATGCCTCTTCGCGAC
Found at i:27141453 original size:159 final size:158
Alignment explanation
Indices: 27141158--27141455 Score: 330
Period size: 159 Copynumber: 1.9 Consensus size: 158
27141148 ATCGAACCGA
* *
27141158 ACCGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGGGGGGACCGGGCTGATCCTCGACTTGCGC
1 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGAACCGGGCTGATCCTCGACTTGCGC
* * * * ** **
27141223 ATTCTGCCTCTCCGATCGGCTGAGCGCCCACATGCCCGTTTCGTGGGTTGGTTTAGGCATAGGGA
66 ATTATGCCTCTCCGATCGGCTCAGCGCCCACACGCCCGTTTCATGGGTTGACTTAGGCATACAGA
27141288 GCTCATTCCATGTTTAAGCCCCAGCCAG
131 GCTCATTCCATGTTTAAGCCCCAGCCAG
* * * * * *
27141316 ACCGAGGGTTGTGGCAGCGGGATCGGCAGCACGTAGAGGGGAATCGGG-TCGATCC-CTGGCTTG
1 ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG-GGGGAACCGGGCT-GATCCTC-GACTTG
* * * * ** * *
27141379 TGCATTATGCCTCTTCGGTCGGCTCAGTGCCCGTACGCTCGTTTCATGGGTTGACTTATGCATAC
63 CGCATTATGCCTCTCCGATCGGCTCAGCGCCCACACGCCCGTTTCATGGGTTGACTTAGGCATAC
*
27141444 AGAGTTCATTCC
128 AGAGCTCATTCC
27141456 CAGTCTAAGA
Statistics
Matches: 112, Mismatches: 25, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
158 33 0.29
159 79 0.71
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (158 bp):
ACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGAACCGGGCTGATCCTCGACTTGCGC
ATTATGCCTCTCCGATCGGCTCAGCGCCCACACGCCCGTTTCATGGGTTGACTTAGGCATACAGA
GCTCATTCCATGTTTAAGCCCCAGCCAG
Found at i:27141587 original size:158 final size:158
Alignment explanation
Indices: 27141123--27141622 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 158
27141113 CAGTCTAAGT
*
27141123 ATACAAAGTTCATTCCCA-GTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCAGGATCGACAG
1 ATACAGAGTTCATT-CCATGTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * * *
27141187 CATGC-AGGGGGGA-CCGGGCTGATCCTCGA-CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCG
65 CA-CCTAGGGGGGATCAGGTC-GAT-CTCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * *
27141249 CCCACATGCCCGTTTCGTGGGTTGGTTTAGGC
127 CCCGCATGCTCGTTTCGTGGGTTGGCTTAGGC
** * * ** * * * * *
27141281 ATAGGGAGCTCATTCCATGTTTAAGCCCCAGCC-AGACCGAGGGTTGTGGCAGCGGGATCGGCAG
1 ATACAGAGTTCATTCCATGTCTAAGATCGAACCGA-ACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * * * * *
27141345 CACGTAGAGGGGAATCGGGTCGATC-CCTGGCTTGTGCATTATGCCTCTTCGGTCGGCTCAGTGC
65 CACCTAG-GGGGGATCAGGTCGATCTCC-AGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * * * *
27141409 CCGTACGCTCGTTTCATGGGTTGACTTATGC
128 CCGCATGCTCGTTTCGTGGGTTGGCTTAGGC
* * * * * * *
27141440 ATACAGAGTTCATTCCCA-GTCTAAGATTGGACCGAACCAAGGGTTGCAGTAGTAAGATCGACAG
1 ATACAGAGTTCATT-CCATGTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCAGGATCGACAG
*
27141504 CACCTAGGGGGGATCAGGTCAATCTCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
65 CACCTAGGGGGGATCAGGTCGATCTCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
*
27141569 GCATGCTTGTTTCGTGGGTTGGCTTAGGC
130 GCATGCTCGTTTCGTGGGTTGGCTTAGGC
*
27141598 ATACGGAGTTCATTCCATGTCTAAG
1 ATACAGAGTTCATTCCATGTCTAAG
27141623 CATACGGAGC
Statistics
Matches: 264, Mismatches: 67, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 8 0.03
158 141 0.53
159 107 0.41
160 8 0.03
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
ATACAGAGTTCATTCCATGTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCAGGATCGACAGC
ACCTAGGGGGGATCAGGTCGATCTCCAGCTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
CATGCTCGTTTCGTGGGTTGGCTTAGGC
Found at i:27141646 original size:26 final size:26
Alignment explanation
Indices: 27141596--27141648 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27141586 GTTGGCTTAG
* *
27141596 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
27141622 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
27141648 G
1 G
27141649 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:27143216 original size:26 final size:26
Alignment explanation
Indices: 27143166--27143218 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27143156 GTTACCTTAG
* *
27143166 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
27143192 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
27143218 G
1 G
27143219 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:27143925 original size:26 final size:26
Alignment explanation
Indices: 27143889--27143941 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27143879 GTTGACTTAG
27143889 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
27143915 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27143941 G
1 G
27143942 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27144553 original size:368 final size:368
Alignment explanation
Indices: 27143867--27144561 Score: 958
Period size: 368 Copynumber: 1.9 Consensus size: 368
27143857 CACCCACACG
* * *
27143867 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTGCATTC
* * * * *
27143932 CCAGTCTAAGATCAGACCGAATCGAGGGTTGCGACAGCAGGATCGATAGCACGTAAGGGGGATCG
66 ACAATCTAAGATCAGACCGAATCGAGGGTTGCGACAGCAGGATCGATAGCACGCAAGGGGGACCA
* * * * *
27143997 GGTTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCAGTTGAGCGCCCGCACGCTCGTTTCATG
131 GATCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCAGCTGAGCGCCCGCACGCTCGTTTCATG
* *
27144062 GGTTGCCTTAGGCATACGAAGTACATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTAGCAG
196 GGTTGCCTTAGGCATACGAAGTACATTCCATGTCTAAGCCCCAGCCGAATCCAGGGTTGTAGCAG
* * * * * * * *
27144127 TAGGATCGGTAGCGGGGTCGACAGCACGTAGAGGGGGACCAGGTAGATCCTTGGCTTACGCATTA
261 CAAGACCAGTAGCGGGATCGACAGCACGCAGAGGGGGACCAGGCAGATCCTCGGCTTACGCATTA
27144192 TGCCTCTTCGATCGGCCACTCCGGCCGATTGAGCGCACGCACT
326 TGCCTCTTCGATCGGCCACTCCGGCCGATTGAGCGCACGCACT
** * *
27144235 CTCGTTTCGTGTTTTGATTTAGGCTTACAGAGTTCATCCCCAGTCTAAGCATACGGAGTGCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTGCATTC
* * * * * *
27144300 ACAATCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATTGGTAGCACGCAGGGGGGACCA
66 ACAATCTAAGATCAGACCGAATCGAGGGTTGCGACAGCAGGATCGATAGCACGCAAGGGGGACCA
* * * * **
27144365 GATCGATCCCCGGCTTGTGCATTCTGCCTCTCTAGCCGGCTGAGTGCCCGCACGCTCGTTTTGTG
131 GATCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCAGCTGAGCGCCCGCACGCTCGTTTCATG
* * *
27144430 GGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGAATCCAGGGTTGTGGCAG
196 GGTTGCCTTAGGCATACGAAGTACATTCCATGTCTAAGCCCCAGCCGAATCCAGGGTTGTAGCAG
** * * * *
27144495 CAAGACCAGTAGCGGGATCGGTAGCATGCAGAGGGGGATCGGGCCGATCCTCGGCTTACGCATTA
261 CAAGACCAGTAGCGGGATCGACAGCACGCAGAGGGGGACCAGGCAGATCCTCGGCTTACGCATTA
27144560 TG
326 TG
27144562 ACGCTCCAAC
Statistics
Matches: 279, Mismatches: 48, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
368 279 1.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (368 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTGCATTC
ACAATCTAAGATCAGACCGAATCGAGGGTTGCGACAGCAGGATCGATAGCACGCAAGGGGGACCA
GATCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCAGCTGAGCGCCCGCACGCTCGTTTCATG
GGTTGCCTTAGGCATACGAAGTACATTCCATGTCTAAGCCCCAGCCGAATCCAGGGTTGTAGCAG
CAAGACCAGTAGCGGGATCGACAGCACGCAGAGGGGGACCAGGCAGATCCTCGGCTTACGCATTA
TGCCTCTTCGATCGGCCACTCCGGCCGATTGAGCGCACGCACT
Found at i:27144649 original size:26 final size:26
Alignment explanation
Indices: 27144612--27144663 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27144602 GTTGACTTAG
27144612 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
27144638 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
27144664 AATCAGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:27144843 original size:26 final size:26
Alignment explanation
Indices: 27144791--27144843 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27144781 GTTGACTTAG
*
27144791 GCATACAGAGTTCATCCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
27144817 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27144843 G
1 G
27144844 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27145109 original size:159 final size:158
Alignment explanation
Indices: 27144911--27145317 Score: 444
Period size: 159 Copynumber: 2.6 Consensus size: 158
27144901 CTGATCCCCA
* * *
27144911 GCTTGCGCATTCTACCTCTTCAGTCGGCTGAGCATCCGCACTCTCATTTCATGGGTTGGCTTAGG
1 GCTTGCGCATTCTACCTTTTCAGTCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGG
* * * * * *** *
27144976 CATAGGGAGCTCATTCCATGTCTATGCCCCAGCT-GGACCGAGGGTTGTGGCAGCGGGACCGACA
66 CATACGGAGTTCATTCCATGTCTATG-ACCAGATCAGACCGAGGGTTACCGCAGCGAGACCGACA
27145040 GCACGTA-AAGGGGGACC-GGGCCGATCCCTG
130 GCAC--ACAAGGGGGACCAGGGCC-ATCCCTG
* * * * * * *
27145070 GCTTGCGCATTATGCCTTTTCTGTCGGCTTAGCACCCGCACGCTCATTTCGTGGGTTGACTTATG
1 GCTTGCGCATTCTACCTTTTCAGTCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGG
* * * * * *
27145135 CATACGGAGTTCATTCCAAGTCTAAGATCGGATCAGATCGAGGGTTACCGCAGCGAGATCGACAG
66 CATACGGAGTTCATTCCATGTCTATGACCAGATCAGACCGAGGGTTACCGCAGCGAGACCGACAG
* *
27145200 CACACAGGGGGGACCAGGTCCATCCCTG
131 CACACAAGGGGGACCAGGGCCATCCCTG
* * * * * *
27145228 GCTTGTGCATTCTACC-TCTCCGACCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAG
1 GCTTGCGCATTCTACCTTTTCAG-TCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAG
27145292 GCATACGGAGTTCATTCCATGTCTAT
65 GCATACGGAGTTCATTCCATGTCTAT
27145318 TCATACGGAG
Statistics
Matches: 203, Mismatches: 41, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
157 5 0.02
158 90 0.44
159 108 0.53
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.25
Consensus pattern (158 bp):
GCTTGCGCATTCTACCTTTTCAGTCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTATGACCAGATCAGACCGAGGGTTACCGCAGCGAGACCGACAG
CACACAAGGGGGACCAGGGCCATCCCTG
Found at i:27145296 original size:158 final size:158
Alignment explanation
Indices: 27144817--27145316 Score: 474
Period size: 158 Copynumber: 3.2 Consensus size: 158
27144807 CCCAGTGTAA
* * * * **
27144817 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATTGGATCGACGGTTGCGGCAG-TAGGATCGGT
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCGA-GATCGAC
* * * * ** *
27144881 AGCACGCAGGGGGGATCGAGCT-GATCCCCAGCTTGCGCATTCTACCTCTTC-AGTCGGCTGAGC
65 AGCACACAGGGGGGA-CCAGGTCCATCCCTGGCTTGCGCATTCTACCTCTCCGA-TCGGCTGAGC
* *
27144944 ATCCGCACTCTCATTTCATGGGTTGGCTTAG
128 ACCCGCACGCTCATTTCATGGGTTGGCTTAG
* * * * * ** * * * * *
27144975 GCATAGGGAGCTCATTCCATGTCTATG-CCCCAGCTGGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGGATC-GGATCGAGGGTTGCGGCAGCGAGATCGAC
* * * * * * *
27145039 AGCACGTA-AAGGGGGACC-GGGCCGATCCCTGGCTTGCGCATTATGCCTTTTCTG-TCGGCTTA
65 AGCAC--ACAGGGGGGACCAGGTCC-ATCCCTGGCTTGCGCATTCTACC-TCTCCGATCGGCTGA
* * *
27145101 GCACCCGCACGCTCATTTCGTGGGTTGACTTAT
126 GCACCCGCACGCTCATTTCATGGGTTGGCTTAG
* * *
27145134 GCATACGGAGTTCATTCCAAGTCTAAGATCGGATCAGATCGAGGGTTACCGCAGCGAGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCGAGATCGACA
* * *
27145199 GCACACAGGGGGGACCAGGTCCATCCCTGGCTTGTGCATTCTACCTCTCCGACCAGCTGAGCACC
66 GCACACAGGGGGGACCAGGTCCATCCCTGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCACC
*
27145264 CGCACGCTCGTTTCATGGGTTGGCTTAG
131 CGCACGCTCATTTCATGGGTTGGCTTAG
*
27145292 GCATACGGAGTTCATTCCATGTCTA
1 GCATACGGAGTTCATTCCAAGTCTA
27145317 TTCATACGGA
Statistics
Matches: 263, Mismatches: 67, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
157 8 0.03
158 135 0.51
159 115 0.44
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCGAGATCGACA
GCACACAGGGGGGACCAGGTCCATCCCTGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCACC
CGCACGCTCATTTCATGGGTTGGCTTAG
Found at i:27145342 original size:26 final size:26
Alignment explanation
Indices: 27145293--27145342 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
27145283 TTGGCTTAGG
* *
27145293 CATACGGAGTTCATTCCATGTCTATT
1 CATACGGAGCTCATTCCATATCTATT
27145319 CATACGGAGCTCATTCTCA-ATCTA
1 CATACGGAGCTCATTC-CATATCTA
27145343 AGATTTTGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.90
27 2 0.10
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (26 bp):
CATACGGAGCTCATTCCATATCTATT
Found at i:27146037 original size:26 final size:26
Alignment explanation
Indices: 27146007--27146059 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27145997 GTTGACTTAG
27146007 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27146033 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27146059 G
1 G
27146060 ATTGAATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27146386 original size:26 final size:26
Alignment explanation
Indices: 27146357--27146409 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27146347 GTTGACTTAG
27146357 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27146383 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27146409 G
1 G
27146410 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27146592 original size:26 final size:26
Alignment explanation
Indices: 27146542--27146594 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27146532 GTTGGCTTAG
* *
27146542 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
27146568 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
27146594 G
1 G
27146595 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:27147719 original size:26 final size:26
Alignment explanation
Indices: 27147645--27147710 Score: 96
Period size: 26 Copynumber: 2.5 Consensus size: 26
27147635 TTGACTTAGG
* * *
27147645 CATACAGAGTTCATGCCCAATCTAAC
1 CATACGGAGTTCATCCCCAGTCTAAC
*
27147671 CATACGGAGTTCATCCCCAGTCTAGC
1 CATACGGAGTTCATCCCCAGTCTAAC
27147697 CATACGGAGTTCAT
1 CATACGGAGTTCAT
27147711 TTCTAGTCTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAC
Found at i:27149255 original size:26 final size:26
Alignment explanation
Indices: 27149205--27149257 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27149195 GTTACCTTAG
* *
27149205 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
27149231 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
27149257 G
1 G
27149258 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:27149964 original size:26 final size:26
Alignment explanation
Indices: 27149928--27149980 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27149918 GTTGACTTAG
27149928 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
**
27149954 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
27149980 G
1 G
27149981 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:27150299 original size:26 final size:26
Alignment explanation
Indices: 27150263--27150315 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27150253 GTTGACTTAC
27150263 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
27150289 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
27150315 G
1 G
27150316 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Done.