Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 284 of 402
Found at i:27150586 original size:11 final size:11
Alignment explanation
Indices: 27150570--27150602 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
27150560 CCCGGGTCAC
27150570 CATCGTCGGAG
1 CATCGTCGGAG
27150581 CATCGTCGGAG
1 CATCGTCGGAG
*
27150592 CATCATCGGAG
1 CATCGTCGGAG
27150603 AGCCTAACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:27151220 original size:26 final size:26
Alignment explanation
Indices: 27151180--27151232 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27151170 GTTGACTTAG
* *
27151180 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
*
27151206 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAGTCTAA
27151232 G
1 G
27151233 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGCTCATCCCCAGTCTAA
Found at i:27151573 original size:26 final size:26
Alignment explanation
Indices: 27151535--27151587 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27151525 GTTGACTTAG
27151535 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
*
27151561 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27151587 G
1 G
27151588 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27152765 original size:26 final size:26
Alignment explanation
Indices: 27152735--27152787 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27152725 GTTGACTTAG
*
27152735 GCATACGCAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
27152761 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27152787 G
1 G
27152788 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27153101 original size:26 final size:26
Alignment explanation
Indices: 27153071--27153123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27153061 GTTGACTTAG
27153071 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
27153097 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27153123 G
1 G
27153124 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27154210 original size:26 final size:26
Alignment explanation
Indices: 27154174--27154226 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27154164 GTTGACTTAG
27154174 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
27154200 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
27154226 G
1 G
27154227 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:27154768 original size:368 final size:368
Alignment explanation
Indices: 27154089--27154787 Score: 890
Period size: 368 Copynumber: 1.9 Consensus size: 368
27154079 GGACCGGGTC
* * * *
27154089 GATCCCCAGCTTGCACATTATGCCTCTCCAACCGGCCTCTTCGGTCAGCTGAACGCCCGCACGCT
1 GATCCCCAGCTTGCACATTATGCCTCTCCAACCGGCCACTCCGATCAGCTGAACACCCGCACGCT
* * *
27154154 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATATGGAGTTCATTCCT
66 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCCAAGCATATGGAGTTCATTCCT
* * *
27154219 AGTCTAAGATCGGATTGGATCGAGGGTTGCGACAATAGGATTGGCAGCACGCAGGGGGGACCGGA
131 AGTCTAAGATCGGATCGGATCGAGGGTTGCGACAATAGGATCGACAGCACGCAGGGGGGACCGGA
* * * * * * *
27154284 CCGATCCCTAGCTAGCGTATTCTACCTCTCTAGCCGGCTGAGCGCCCGAACACTCGTTTCGTGGG
196 CCGATCCCTAGCTAGCGCATTCTACCTCTCCAGCCGACTGAGCACCCGAACACTCATTTCATCGG
* *
27154349 TTGGCTTAGGAATACGGTGTACATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACA
261 TTGGCTTAGGAATACGGAGTACATTCCATGCCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACA
27154414 GGACCGGTAGCGGGATCGGTAGCATGCAGAGGGGGATCCGACT
326 GGACCGGTAGCGGGATCGGTAGCATGCAGAGGGGGATCCGACT
* *** * * *
27154457 GATCCCC-GACTTGCACATTATGCCTCTTCGGTCGGCCACTCCGATCAGCTGAGCACCTGTACGC
1 GATCCCCAG-CTTGCACATTATGCCTCTCCAACCGGCCACTCCGATCAGCTGAACACCCGCACGC
* *
27154521 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCCAAGCATATGGAGTTTATTCT
65 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCCAAGCATATGGAGTTCATTCC
* * * * *
27154586 TAGTTTAATATTGGATCGGA-CTGAGGGTTGCGACAGTAGGATCGATAGCACGCAGGGGGGACC-
130 TAGTCTAAGATCGGATCGGATC-GAGGGTTGCGACAATAGGATCGACAGCACGCAGGGGGGACCG
* * * * * * * *
27154649 GAGCGGATCCCTGGATTA-CGCATTCTGCCTCTCCGGCTGACTGAGCACCCGCACGC-CTATTTC
194 GA-CCGATCCCTAG-CTAGCGCATTCTACCTCTCCAGCCGACTGAGCACCCGAACACTC-ATTTC
* *
27154712 ATCGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGCCTAAGCCCCAG-CATGACCGAGGGTTGT
256 ATCGGTTGGCTTAGGAATACGGAG-TACATTCCATGCCTAAGCCCCAGCCA-GACCGAGGGTTGT
*
27154775 GGCAGCAGGACCG
319 GGCAACAGGACCG
27154788 TCAGCACGCG
Statistics
Matches: 280, Mismatches: 44, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
367 7 0.03
368 270 0.96
369 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (368 bp):
GATCCCCAGCTTGCACATTATGCCTCTCCAACCGGCCACTCCGATCAGCTGAACACCCGCACGCT
CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCCAAGCATATGGAGTTCATTCCT
AGTCTAAGATCGGATCGGATCGAGGGTTGCGACAATAGGATCGACAGCACGCAGGGGGGACCGGA
CCGATCCCTAGCTAGCGCATTCTACCTCTCCAGCCGACTGAGCACCCGAACACTCATTTCATCGG
TTGGCTTAGGAATACGGAGTACATTCCATGCCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAACA
GGACCGGTAGCGGGATCGGTAGCATGCAGAGGGGGATCCGACT
Found at i:27154925 original size:26 final size:26
Alignment explanation
Indices: 27154885--27154936 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27154875 GTTGGCTTAG
*
27154885 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACGGAGCTCATTCCCAA-TCTAA
27154911 GCATACGGAGCTCATTCCCAATCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
27154937 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAATCTAA
Found at i:27155634 original size:26 final size:26
Alignment explanation
Indices: 27155594--27155646 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27155584 GTTGACTTAG
*
27155594 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
* * *
27155620 GCATATGGAGATCATTCCTAGTCTAA
1 GCATACGGAGATCATCCCCAGTCTAA
27155646 G
1 G
27155647 ATGGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGATCATCCCCAGTCTAA
Found at i:27156267 original size:368 final size:354
Alignment explanation
Indices: 27155569--27156410 Score: 945
Period size: 368 Copynumber: 2.3 Consensus size: 354
27155559 GAGCGCCCGG
* *
27155569 ATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGATCA
1 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAT-GAGTTCA
* * * * * * *
27155634 TTCCTAGTCTAAGATGGGACCGGATCGAGGGTTGCGGTAGCAAGATCAACAGCATGTAAGGGGGA
65 TTCCCAGTCTAAGAT-CGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAAGAGAGA
* * * * ** * * * *
27155699 TCGAATTGATCCCCGGCTTGTGCATTCTACCTCTCCGGTCGGCTAAGCGCCCGTACGCTCGTTTC
129 CCGAACTGATCCCCGACTTATGCATTCTACCTCTCCGACCGACTAAGCACCCGCACGCGCGTTTC
* * *
27155764 ATGGGTTGGCTTAGGCATACGGAGTGCATTCCACGTCTAAGCCCCAGCATGATTGAGGGTTGTCG
194 ATGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCATGATCGAGGGTTGTCG
* * * * *
27155829 CAGTAGGACCGACAGTGGGATTGGCAGCATACAGAGGGGGACCGGGTTGATCCTCGACTTGCGCA
259 CAGTAAGACCGACAGCGGGATTGGCAGCATACAGAAGGGGACCGGGCTGATCCTCGACTTACGCA
* * * * *
27155894 TTATGCCCCTTCGGTCGGCTTCTCCAATCGGTTGTGCGCTCGT
324 TTATGCCCC-TC---CGG-----CCAA-CGGAT-AGCAC-AGC
* *
27155937 ATGCTCGTTTTGTTGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTTCA
1 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATG-AGTTCA
* * * **
27156002 TTCCCGGTCTAAGATCAGACCGGATCGAAGGTTGCGGTAGTAGGATCGGTAGCACGTAGAGAGAG
65 TTCCCAGTCTAAGATC-GACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCACGTA-AGAGAG
* * * *
27156067 ACCGAGCTGATCCCTGACTTATGCATTCTACCTCTTCGACCGACTGAGCACCCGCACGCGCGTTT
128 ACCGAACTGATCCCCGACTTATGCATTCTACCTCTCCGACCGACTAAGCACCCGCACGCGCGTTT
27156132 CATGGGTTGGCTTAGGCATACAGAGTACACTT-CACGTCTAAGCCCCAGTCA-GATCGAGGGTTG
193 CATGGGTTGGCTTAGGCATACAGAGTACA-TTCCACGTCTAAGCCCCAG-CATGATCGAGGGTTG
* ** **
27156195 TGGCAGTAAGACCGGTAGCGGGATTGGCAGCATGTA-AAGGGGACCGGGCTGATCCTC-AGCTTA
256 TCGCAGTAAGACCGACAGCGGGATTGGCAGCATACAGAAGGGGACCGGGCTGATCCTCGA-CTTA
* * * *
27156258 TGTATTATGCCTCTCCGGCCAACTGATAGCACAGC
320 CGCATTATGCCCCTCCGGCCAACGGATAGCACAGC
* * *
27156293 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACCGAGTTCA
1 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATA-TGAGTTCA
* * *
27156358 TTCCCAGTCTAAGATCGAACGAATCGAGGGTTGCGGGAGCAGGATCGACAGCA
65 TTCCCAGTCTAAGATCGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCA
27156411 TGCATGGGGG
Statistics
Matches: 402, Mismatches: 65, Indels: 27
0.81 0.13 0.05
Matches are distributed among these distances:
355 30 0.07
356 74 0.18
357 4 0.01
358 3 0.01
359 4 0.01
364 3 0.01
367 4 0.01
368 138 0.34
369 138 0.34
370 4 0.01
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.25
Consensus pattern (354 bp):
ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAGTTCAT
TCCCAGTCTAAGATCGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAAGAGAGACC
GAACTGATCCCCGACTTATGCATTCTACCTCTCCGACCGACTAAGCACCCGCACGCGCGTTTCAT
GGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAGCATGATCGAGGGTTGTCGCA
GTAAGACCGACAGCGGGATTGGCAGCATACAGAAGGGGACCGGGCTGATCCTCGACTTACGCATT
ATGCCCCTCCGGCCAACGGATAGCACAGC
Found at i:27156348 original size:26 final size:26
Alignment explanation
Indices: 27156318--27156370 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27156308 GTTGACTTAG
*
27156318 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
*
27156344 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATCCCCAGTCTAA
27156370 G
1 G
27156371 ATCGAACGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACCGAGTTCATCCCCAGTCTAA
Found at i:27156798 original size:159 final size:158
Alignment explanation
Indices: 27156344--27156836 Score: 469
Period size: 159 Copynumber: 3.1 Consensus size: 158
27156334 CCCAGTCTAA
* * * *
27156344 GCATACCGAGTTCATTCCCAGTCTAAGATCGAACGA-ATCGAGGGTTGCGGGAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * **
27156408 GCATGCATGG-GGGCCCGGGCTGATCCTCGGCTCGCACATTTTGCATCACCGGCCGACTAAGCGC
66 GCATGCA-GGAGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGACTAAGCGC
27156472 CCGCACG-TCCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCT-CGTTTCGTGGGTTGGCTTAG
* * * ** * * * * * * * **
27156501 GCATAGGGAGGTCATT-CCATGGCTAAGCCCTAGCCGGACCAAGGGTTGTGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * **
27156565 AGCATGCAGAAGAGGACCGGGCTGATCCCCGGCTTACGCATTATGCCTCTTCGATC-ATCTCAA-
65 AGCATGCAGGAG-GGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGA-CT-AAG
* * *
27156628 TGCCCGCACGCTCGTTTCGTTGGGTTGACTTAT
127 CGCCCGCACGCTCGTTTCG-TGGGTTGGCTTAG
* *
27156661 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
27156726 GCACGCAGGAGGGATCGAG-TCGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGACTGAGCGC
66 GCATGCAGGAGGGACCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGACTAAGCGC
* * *
27156790 CTGCACGCTCATTTTGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
27156819 GCATACAGAGTTCATTCC
1 GCATACGGAGTTCATTCC
27156837 ATTTCTAAGC
Statistics
Matches: 259, Mismatches: 65, Indels: 23
0.75 0.19 0.07
Matches are distributed among these distances:
156 3 0.01
157 23 0.09
158 59 0.23
159 102 0.39
160 69 0.27
161 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCATGCAGGAGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGACTAAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:27157577 original size:26 final size:26
Alignment explanation
Indices: 27157541--27157593 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27157531 GTTGACTTAG
27157541 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27157567 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27157593 G
1 G
27157594 ATCGAACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27157924 original size:26 final size:26
Alignment explanation
Indices: 27157894--27157945 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
27157884 GTTGATTTAG
27157894 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
27157920 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
27157946 AATCGGATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:27158162 original size:184 final size:183
Alignment explanation
Indices: 27157791--27158976 Score: 572
Period size: 184 Copynumber: 6.6 Consensus size: 183
27157781 ACTGACAGCG
* * * ** * * *
27157791 GGATCGGCAGCACGTAGAGGGAGACCGTGTTGATCCCCGACTTGCGCATTATGCCTCTCTAGCCA
1 GGATCGACAGCACGTAG-GGGGGACCGAGCCGATCCCCG-CTTGTGCATTATGCCTCTCTGGCCG
* * * *
27157856 GTTGAGCACCCGCACGCTCGTTTCATGGGTTGATTTAGGCATACGGAGTTCATCCCTAGTCTAAG
64 GTTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAG
* * **
27157921 CATACGGAGTTCATTCCTAGTCTAAAATCGGATCGGACCGAGGGTTACGGTAGTA
129 CATACGAAGTTCATTCCCAGTCTAAAATCGGATCGGACCGAGGGTTACGACAGTA
* * *
27157976 GGATCGACAGCACGTAGGGGGGACCGGGCCAATCCCCAGCTTGTGCATTATGCCTCTCCGGCCGG
1 GGATCGACAGCACGTAGGGGGGACCGAGCCGATCCCC-GCTTGTGCATTATGCCTCTCTGGCCGG
*
27158041 TTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTGGTCTAAGC
65 TTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGC
* * * *
27158106 GTACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGTGGGTTGCGACAGTA
130 ATACGAAGTTCATTCCCAGTCTAAAATCGGATCGGACCGAGGGTTACGACAGTA
* * ** * * * * * *
27158160 GGATCGACAGCACGCAGGAGGGATAGAGCCGATCCCTGGCTTGTGCATTCTGTCTTTCTGACTGG
1 GGATCGACAGCACGTAGGGGGGACCGAGCCGATCCC-CGCTTGTGCATTATGCCTCTCTGGCCGG
* ** * ** *
27158225 CTGAACGCCCGCACGC-CTGTTTTGTGGGTTGGCTTAGGCATATGGAG-T-ATTCC-ATGT-TGA
65 TTGAACGCCCGCACGCTC-GTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTA-GTCT-A
** * *** * ** * * **
27158285 AGC---CCCAG-CCGGACCGAGGGT----T---AT-GG-CAGTA-GG--ACTGGCAGCG
127 AGCATACGAAGTTCATTCCCAGTCTAAAATCGGATCGGACCG-AGGGTTAC-GACAGTA
* * * * *** * * *
27158328 GGATCGACAGCATGCAGAGGGGGATCGGGTTAATCCCCGGCTTGCGCATTATGCCTCTCCGGTCG
1 GGATCGACAGCACGTAG-GGGGGACCGAGCCGATCCCC-GCTTGTGCATTATGCCTCTCTGGCCG
* * ** *
27158393 GTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCGAGTCTAAG
64 GTTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAG
* * * ** * * * *** *
27158458 CATACGGAGTTCATTCTCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGTTGCA
129 CATACGAAGTTCATTCCCAGTCTAAAATCGGATCGGACCGAGGGTTACGACAGTA
* * * * * ** *
27158513 GGATCGACAGTACGCAAGGGGTACCAAGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCCGG
1 GGATCGACAGCACGTAGGGGGGACCGAGCCGATCCCC-GCTTGTGCATTATGCCTCTCTGGCCGG
* ** * * *
27158578 CTG-A-GCACC-CACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAG-T-ATTCC-ATGTCTAA
65 TTGAACGC-CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTA-GTCTAA
** ** * ** * * *
27158637 GC---CCCAGCTGGA--CCGAGGGT----T--G-T-GGTAGC-A-GG--ACCGGCAGCA
128 GCATACGAAG-TTCATTCCCAGTCTAAAATCGGATCGG-ACCGAGGGTTA-CGACAGTA
* ** * * ** *
27158679 AGATCGGTAGCACGTAGAGGGGGATCGGGTTGATCCCCGACTTGTGCATTATGCCTCTCCGGCCG
1 GGATCGACAGCACGTAG-GGGGGACCGAGCCGATCCCCG-CTTGTGCATTATGCCTCTCTGGCCG
* * * * * ** * * *
27158744 GTTGAGCACCCGTATGATCGTTTTGTGGTTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
64 GTTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAG
* * **
27158809 CATAC-AGAGTTCATTCCCAGTCTAAAATTGGATCGGATCGAGGGTTACGGTAGTA
129 CATACGA-AGTTCATTCCCAGTCTAAAATCGGATCGGACCGAGGGTTACGACAGTA
* * * * * * * *
27158864 GGATCGATAGCACGTAGGGGGGATCGAGTCGATCCCTGACTTGCGCATTCTGCCTATCCGGCCGG
1 GGATCGACAGCACGTAGGGGGGACCGAGCCGATCCCCG-CTTGTGCATTATGCCTCTCTGGCCGG
* ** * * * ** *
27158929 CTGAGTGCCCTCACGCTCGTTTCGTGGTTTGGTTTAGGCATACGGAGT
65 TTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGT
27158977 ATTCCATGTC
Statistics
Matches: 757, Mismatches: 183, Indels: 123
0.71 0.17 0.12
Matches are distributed among these distances:
166 18 0.02
167 41 0.05
168 25 0.03
169 111 0.15
170 5 0.01
171 24 0.03
172 4 0.01
173 2 0.00
174 7 0.01
175 10 0.01
176 4 0.01
177 3 0.00
178 8 0.01
179 6 0.01
180 12 0.02
181 3 0.00
182 49 0.06
183 10 0.01
184 357 0.47
185 56 0.07
186 2 0.00
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (183 bp):
GGATCGACAGCACGTAGGGGGGACCGAGCCGATCCCCGCTTGTGCATTATGCCTCTCTGGCCGGT
TGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCA
TACGAAGTTCATTCCCAGTCTAAAATCGGATCGGACCGAGGGTTACGACAGTA
Found at i:27158502 original size:537 final size:537
Alignment explanation
Indices: 27157470--27158623 Score: 1469
Period size: 537 Copynumber: 2.2 Consensus size: 537
27157460 CACCCGTTTG
* * * *
27157470 ATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGTTGAACGCCGGCACACTCGTTTTGTGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAACGCCCGCACGCTCGTTTTGTGGGTTG
*
27157535 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
66 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAA
** * ** * * *
27157600 CCGAATTGATGGTTGTGGTAGCAGGATCGACAGCATGTAAGGGGGATCGGGCCGATCCCCAACTT
131 CCGAACCGATGGTTGCGACAGCAGGATCGACAGCACGTAAGGGGGATAGAGCCGATCCCCAACTT
*
27157665 ACGCATTCTGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
196 ACGCATTCTGCCTCTCCGACCGGCTGAACACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
*
27157730 CGGAGTATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTATGGCAACAGGACTGACAGCGGGAT
261 CGGAGTATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTATGGCAACAGGACTGACAGCGGGAT
* * * * *
27157795 CGGCAGCACGTAGAGGGAGACCGTGTTGATCCCCGACTTGCGCATTATGCCTCTCTAGCCAGTTG
326 CGACAGCACGCAGAGGGAGACCGGGTTAATCCCCGACTTGCGCATTATGCCTCTCCAGCCAGTTG
* *
27157860 AGCACCCGCACGCTCGTTTCATGGGTTGATTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATA
391 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCGAGTCTAAGCATA
** * *
27157925 CGGAGTTCATTCCTAGTCTAAAATCGGATCGGACCGAGGGTTACGGTAGTAGGATCGACAGCACG
456 CGGAGTTCATTCCTAGTCTAAAATCAAACCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACG
* * **
27157990 TAGGGGGGACCGGGCCA
521 CAAGGGGGACCAAGCCA
* * * * **
27158007 ATCCCCAGCTTGTGCATTATGCCTCTCCGGCCGGTTGAACGCCCGCACGCTCGTTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAACGCCCGCACGCTCGTTTTGTGGGTTG
* ** * *
27158072 ACTTAGGCATACAGAGTTCATCCCTGGTCTAAGCGTACGAAGTTCATTCCCAGTCTAAGATCGGA
66 ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAA
* * * * ***
27158137 TCGGACCG-TGGGTTGCGACAGTAGGATCGACAGCACG-CAGGAGGGATAGAGCCGATCCCTGGC
131 CCGAACCGAT-GGTTGCGACAGCAGGATCGACAGCACGTAAGG-GGGATAGAGCCGATCCCCAAC
** * * * * * **
27158200 TTGTGCATTCTGTCTTTCTGACTGGCTGAACGCCCGCACGC-CTGTTTTGTGGGTTGGCTTAGGC
194 TTACGCATTCTGCCTCTCCGACCGGCTGAACACCCGCACGCTC-GTTTCATGGGTTGGCTTAGGC
* ** *
27158264 ATATGGAGTATTCCATGT-TGAAGCCCCAGCCGGACCGAGGGTTATGGCAGTAGGACTGGCAGCG
258 ATACGGAGTATTCCATGTCT-AAGCCCCAGCCGGACCGAGGGTTATGGCAACAGGACTGACAGCG
* * * * * * *
27158328 GGATCGACAGCATGCAGAGGGGGATCGGGTTAATCCCCGGCTTGCGCATTATGCCTCTCCGGTCG
322 GGATCGACAGCACGCAGAGGGAGACCGGGTTAATCCCCGACTTGCGCATTATGCCTCTCCAGCCA
* * *
27158393 GTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCGAGTCTAAG
387 GTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCGAGTCTAAG
* * * *
27158458 CATACGGAGTTCATT-CTCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGTTGCAGGATCGACA
452 CATACGGAGTTCATTCCT-AGTCTAAAATCAAACCGGACCGAGGGTTACGGTAGCAGGATCGACA
* * *
27158522 GTACGCAAGGGGTACCAAGCCG
516 GCACGCAAGGGGGACCAAGCCA
* *
27158544 ATCCCCGGCTTACGCATTCTGCCTCTCTGGCCGGCTG-A-GCACC-CACGCTCGTTTTGTGGGTT
1 ATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAACGC-CCGCACGCTCGTTTTGTGGGTT
*
27158606 GGCTTAGGCATACGGAGT
65 GACTTAGGCATACGGAGT
27158624 ATTCCATGTC
Statistics
Matches: 523, Mismatches: 88, Indels: 14
0.84 0.14 0.02
Matches are distributed among these distances:
535 35 0.07
536 11 0.02
537 477 0.91
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (537 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAACGCCCGCACGCTCGTTTTGTGGGTTG
ACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAA
CCGAACCGATGGTTGCGACAGCAGGATCGACAGCACGTAAGGGGGATAGAGCCGATCCCCAACTT
ACGCATTCTGCCTCTCCGACCGGCTGAACACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
CGGAGTATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTATGGCAACAGGACTGACAGCGGGAT
CGACAGCACGCAGAGGGAGACCGGGTTAATCCCCGACTTGCGCATTATGCCTCTCCAGCCAGTTG
AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCGAGTCTAAGCATA
CGGAGTTCATTCCTAGTCTAAAATCAAACCGGACCGAGGGTTACGGTAGCAGGATCGACAGCACG
CAAGGGGGACCAAGCCA
Found at i:27158779 original size:351 final size:352
Alignment explanation
Indices: 27157976--27159375 Score: 1549
Period size: 353 Copynumber: 4.0 Consensus size: 352
27157966 TACGGTAGTA
* * * ** *
27157976 GGATCGACAGCACGTAG-GGGGGACCGGGCCAATCCCC-AGCTTGTGCATTATGCCTCTCCGGCC
1 GGATCGGCAGCACGCAGAGGGGGATCGGGTTAATCCCCGA-CTTGCGCATTATGCCTCTCCGGCC
* * *
27158039 GGTTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTG-GTCTA
65 GGTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC-GAGTCTA
* * ** * * * *
27158103 AGCGTACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGTGGGTTGCGACAGTAGGATCGAC
129 AGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGAC
** ** * * * *
27158168 AGCACGC-AGGAGGGATAGAGCCGATCCCTGGCTTGTGCATTCTGTCTTTCTGACTGGCTGAACG
194 AGCACGCAAGG-GGGACCGAGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTG-ACG
* * *
27158232 CCCGCACGC-CTGTTTTGTGGGTTGGCTTAGGCATATGGAGTATTCCATGT-TGAAGCCCCAGCC
257 CCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTATTCCATGTCT-AAGCCCCAGCT
* *
27158295 GGACCGAGGGTTATGGCAGTAGGACTGGCAGCG
320 GGACCGAGGGTTGTGGCAGTAGGACCGGCAGCG
* * * *
27158328 GGATCGACAGCATGCAGAGGGGGATCGGGTTAATCCCCGGCTTGCGCATTATGCCTCTCCGGTCG
1 GGATCGGCAGCACGCAGAGGGGGATCGGGTTAATCCCCGACTTGCGCATTATGCCTCTCCGGCCG
* * *
27158393 GTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCGAGTCTAAG
66 GTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCGAGTCTAAG
* * **
27158458 CATACGGAGTTCATTCTCAGTCTAAGATCAAACCGGATCGAGGGTTGCGGTTGCAGGATCGACAG
131 CATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * * *
27158523 TACGCAAGGGGTACCAAGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGCCGGCTGA-GCACC
196 CACGCAAGGGGGACCGAGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGACGC-CC
*
27158587 -CACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTATTCCATGTCTAAGCCCCAGCTGGACC
260 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTATTCCATGTCTAAGCCCCAGCTGGACC
* * *
27158651 GAGGGTTGTGGTAGCAGGACCGGCAGCA
325 GAGGGTTGTGGCAGTAGGACCGGCAGCG
* * * * *
27158679 AGATCGGTAGCACGTAGAGGGGGATCGGGTTGATCCCCGACTTGTGCATTATGCCTCTCCGGCCG
1 GGATCGGCAGCACGCAGAGGGGGATCGGGTTAATCCCCGACTTGCGCATTATGCCTCTCCGGCCG
* * * ** * *
27158744 GTTGAGCACCCGTATGATCGTTTTGTGGTTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
66 GTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCGAGTCTAAG
* * *** * * * * * *
27158809 CATACAGAGTTCATTCCCAGTCTAAAATTGGATCGGATCGAGGGTTACGGTAGTAGGATCGATAG
131 CATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * * * * * *
27158874 CACGTAGGGGGGATCGAGTCGATCCCTGACTTGCGCATTCTGCCTATCCGGCCGGCTGAGTGCCC
196 CACGCAAGGGGGACCGAGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGA-CGCCC
* * * * *
27158939 TCACGCTCGTTTCGTGGTTTGGTTTAGGCATACGGAGTATTCCATGTCTAAACCCCAGTTGGACC
260 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTATTCCATGTCTAAGCCCCAGCTGGACC
27159004 GAGGGTTGTGGCAGTAGGACCGGCAGCG
325 GAGGGTTGTGGCAGTAGGACCGGCAGCG
* * * * *
27159032 GGATCTGCAGCACGCAGAGGGGGATCGGGTTGATCCCCGGCTTGCGTATTATACCTCTCCGGCCG
1 GGATCGGCAGCACGCAGAGGGGGATCGGGTTAATCCCCGACTTGCGCATTATGCCTCTCCGGCCG
* * * *
27159097 GTTGAGGACCCGCACGCTCGTTTCATGGGTTGACTGAGGCGTACGGAGTTCATCCCTAGTCTAAG
66 GTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCGAGTCTAAG
* *
27159162 CATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATC
131 CATACGGAGTTCATTCCCAGTCTAAGATC--A--A-ACCGGACCGAGGGTTGCGGCAGCAGGATC
* * * * * * * *
27159227 GACAGCACACAGGGGGGACCGGGCCAATCCCTAGCTTACGCATTTTGCCTCTCCAATCGGCTGA-
191 GACAGCACGCAAGGGGGACCGAGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGAC
* * * * *
27159291 GCGCCGCATGCCCGTTTCATGGGTTGGCTTAAGCATAGGGAGCTCATTCCATGTCTAAGCCCCAG
256 GC-CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-T-ATTCCATGTCTAAGCCCCAG
*** *
27159356 CCAAACTGAGGGTTGTGGCA
318 CTGGACCGAGGGTTGTGGCA
27159376 ATGGGATTGG
Statistics
Matches: 880, Mismatches: 150, Indels: 29
0.83 0.14 0.03
Matches are distributed among these distances:
351 297 0.34
352 23 0.03
353 417 0.47
354 3 0.00
356 2 0.00
357 31 0.04
358 73 0.08
359 34 0.04
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (352 bp):
GGATCGGCAGCACGCAGAGGGGGATCGGGTTAATCCCCGACTTGCGCATTATGCCTCTCCGGCCG
GTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCGAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAAGGGGGACCGAGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGGCTGACGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTATTCCATGTCTAAGCCCCAGCTGGACCG
AGGGTTGTGGCAGTAGGACCGGCAGCG
Found at i:27158818 original size:26 final size:26
Alignment explanation
Indices: 27158782--27158833 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27158772 TTTGACTTAG
*
27158782 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
27158808 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27158834 AATTGGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27158869 original size:704 final size:709
Alignment explanation
Indices: 27157984--27159356 Score: 1825
Period size: 704 Copynumber: 1.9 Consensus size: 709
27157974 TAGGATCGAC
*
27157984 AGCACGTAGGGGGGACCGGGCCAATCCCCAGCTTGTGCATTATGCCTCTCCGGCCGGTTGAACGC
1 AGCACGTAGGGGGGACCGGGCCAATCCCCAGCTTGTGCATTATGCCTCTCCGGCCGGTTGAACAC
* ** *
27158049 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTGGTCTAAGCGTACGAAG
66 CCGCACGATCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAG
* * *
27158114 TTCATTCCCAGTCTAAGATCGGATCGGACCGTGGGTTGCGACAGTAGGATCGACAGCACGCAGGA
131 TTCATTCCCAGTCTAAAATCGGATCGGACCGAGGGTTACGACAGTAGGATCGACAGCACGCAGGA
* * * * * *
27158179 GGGATAGAGCCGATCCCTGGCTTGTGCATTCTGTCTTTCTGACTGGCTGAACGCCCGCACGC-CT
196 GGGATAGAGCCGATCCCTGACTTGCGCATTCTGCCTATCCGACCGGCTGAACGCCCGCACGCTC-
* * *
27158243 GTTTTGTGGGTTGGCTTAGGCATATGGAGTATTCCATGT-TGAAGCCCCAGCCGGACCGAGGGTT
260 GTTTCGTGGGTTGGCTTAGGCATACGGAGTATTCCATGTCT-AAACCCCAGCCGGACCGAGGGTT
* *
27158307 ATGGCAGTAGGACTGGCAGCGGGATC-GACAGCATGCAGAGGGGGATCGGGTTAATCCCCGGCTT
324 ATGGCAGTAGGACCGGCAGCGGGATCTG-CAGCACGCAGAGGGGGATCGGGTTAATCCCCGGCTT
* * * *
27158371 GCGCATTATGCCTCTCCGGTCGGTTGAGCG-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
388 GCGCATTATACCTCTCCGGCCGGTTGAG-GACCCGCACGCTCGTTTCATGGGTTGACTGAGGCAT
* * *
27158435 ATGGAGTTCATCCCGAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATC-A-A-ACCGGATC
452 ACGGAGTTCATCCCGAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAACAGACCGGACC
* ** * * * * *
27158497 GAGGGTTGCGGTTGCAGGATCGACAGTACGCAAGGGGTACCAAGCCGATCCCCGGCTTACGCATT
517 GAGGGTTGCAGCAGCAGGATCGACAGCACACAAGGGGGACCAAGCCAATCCCCAGCTTACGCATT
*** * ** *
27158562 CTGCCTCTCTGGCCGGCTGAGCACC-CACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAG-T-
582 CTGCCTCTCCAACCGGCTGAGCACCGCACGCCCGTTTCATGGGTTGGCTTAAGCATACGGAGCTC
27158624 ATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGTAGCAGGACCGGCAGCAAGATCGGT
647 ATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGTAGCAGGACCGGCAGCAAGATCGGT
* *** *
27158687 AGCACGTAGAGGGGGATCGGGTTGATCCCC-GACTTGTGCATTATGCCTCTCCGGCCGGTTGAGC
1 AGCACGTAG-GGGGGACCGGGCCAATCCCCAG-CTTGTGCATTATGCCTCTCCGGCCGGTTGAAC
* * ** * *
27158751 ACCCGTATGATCGTTTTGTGGTTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATAC-A
64 ACCCGCACGATCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGA
* * ** * *
27158815 GAGTTCATTCCCAGTCTAAAATTGGATCGGATCGAGGGTTACGGTAGTAGGATCGATAGCACGTA
129 -AGTTCATTCCCAGTCTAAAATCGGATCGGACCGAGGGTTACGACAGTAGGATCGACAGCACGCA
* * * * ** *
27158880 GGGGGGATCGAGTCGATCCCTGACTTGCGCATTCTGCCTATCCGGCCGGCTGAGTGCCCTCACGC
193 GGAGGGATAGAGCCGATCCCTGACTTGCGCATTCTGCCTATCCGACCGGCTGAACGCCCGCACGC
* * **
27158945 TCGTTTCGTGGTTTGGTTTAGGCATACGGAGTATTCCATGTCTAAACCCCAGTTGGACCGAGGGT
258 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTATTCCATGTCTAAACCCCAGCCGGACCGAGGGT
* *
27159010 TGTGGCAGTAGGACCGGCAGCGGGATCTGCAGCACGCAGAGGGGGATCGGGTTGATCCCCGGCTT
323 TATGGCAGTAGGACCGGCAGCGGGATCTGCAGCACGCAGAGGGGGATCGGGTTAATCCCCGGCTT
* *
27159075 GCGTATTATACCTCTCCGGCCGGTTGAGGACCCGCACGCTCGTTTCATGGGTTGACTGAGGCGTA
388 GCGCATTATACCTCTCCGGCCGGTTGAGGACCCGCACGCTCGTTTCATGGGTTGACTGAGGCATA
* *
27159140 CGGAGTTCATCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGGAC
453 CGGAGTTCATCCCGAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-A-CAGACCGGAC
* ** *
27159205 CGAGGGTTGCAGCAGCAGGATCGACAGCACACAGGGGGGACCGGGCCAATCCCTAGCTTACGCAT
516 CGAGGGTTGCAGCAGCAGGATCGACAGCACACAAGGGGGACCAAGCCAATCCCCAGCTTACGCAT
* * * * *
27159270 TTTGCCTCTCCAATCGGCTGAGCGCCGCATGCCCGTTTCATGGGTTGGCTTAAGCATAGGGAGCT
581 TCTGCCTCTCCAACCGGCTGAGCACCGCACGCCCGTTTCATGGGTTGGCTTAAGCATACGGAGCT
27159335 CATTCCATGTCTAAGCCCCAGC
646 CATTCCATGTCTAAGCCCCAGC
27159357 CAAACTGAGG
Statistics
Matches: 571, Mismatches: 84, Indels: 21
0.84 0.12 0.03
Matches are distributed among these distances:
703 12 0.02
704 423 0.74
705 3 0.01
706 1 0.00
708 1 0.00
709 79 0.14
710 30 0.05
711 1 0.00
712 21 0.04
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (709 bp):
AGCACGTAGGGGGGACCGGGCCAATCCCCAGCTTGTGCATTATGCCTCTCCGGCCGGTTGAACAC
CCGCACGATCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAG
TTCATTCCCAGTCTAAAATCGGATCGGACCGAGGGTTACGACAGTAGGATCGACAGCACGCAGGA
GGGATAGAGCCGATCCCTGACTTGCGCATTCTGCCTATCCGACCGGCTGAACGCCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATACGGAGTATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTAT
GGCAGTAGGACCGGCAGCGGGATCTGCAGCACGCAGAGGGGGATCGGGTTAATCCCCGGCTTGCG
CATTATACCTCTCCGGCCGGTTGAGGACCCGCACGCTCGTTTCATGGGTTGACTGAGGCATACGG
AGTTCATCCCGAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAACAGACCGGACCGAGG
GTTGCAGCAGCAGGATCGACAGCACACAAGGGGGACCAAGCCAATCCCCAGCTTACGCATTCTGC
CTCTCCAACCGGCTGAGCACCGCACGCCCGTTTCATGGGTTGGCTTAAGCATACGGAGCTCATTC
CATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGTAGCAGGACCGGCAGCAAGATCGGT
Found at i:27159626 original size:121 final size:121
Alignment explanation
Indices: 27159409--27159629 Score: 298
Period size: 121 Copynumber: 1.8 Consensus size: 121
27159399 GGGACCGGGC
* * * **
27159409 CGATCCCCGGCTTGCGCATTATGCCTCTTCGATCGGCTCAGTGCCCGCACGCTCATTTTGTGGGT
1 CGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTCAGTGCCCGCACGATCATTTCATGGGT
* * *
27159474 TGACTTATGTATACGGAGTTTATTCCCAGTCTAAGATTGGACCAGACCGAGCCGGT
66 TGACTTAGGTATACGGAGTTCATTCCAAGTCTAAGATTGGACCAGACCGAGCCGGT
* * * * * * *
27159530 CGATCCCCGACTTGTGCATTCTGCCTCTTTGGCCGGTTGAGTGCCCGCACGATCGTTTCATGGGT
1 CGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTCAGTGCCCGCACGATCATTTCATGGGT
*
27159595 TGGCTTAGGTATACGGAGTTCATTCCAAGTCTAAG
66 TGACTTAGGTATACGGAGTTCATTCCAAGTCTAAG
27159630 CATACAGAGC
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
121 84 1.00
ACGTcount: A:0.17, C:0.27, G:0.26, T:0.30
Consensus pattern (121 bp):
CGATCCCCGACTTGCGCATTATGCCTCTTCGACCGGCTCAGTGCCCGCACGATCATTTCATGGGT
TGACTTAGGTATACGGAGTTCATTCCAAGTCTAAGATTGGACCAGACCGAGCCGGT
Found at i:27159643 original size:26 final size:26
Alignment explanation
Indices: 27159605--27159655 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
27159595 TGGCTTAGGT
* *
27159605 ATACGGAGTTCATT-CCAAGTCTAAGC
1 ATACAGAGCTCATTCCCAA-TCTAAGC
27159631 ATACAGAGCTCATTCCCAATCTAAG
1 ATACAGAGCTCATTCCCAATCTAAG
27159656 ATTTTGAGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (26 bp):
ATACAGAGCTCATTCCCAATCTAAGC
Found at i:27166614 original size:26 final size:26
Alignment explanation
Indices: 27166578--27166629 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27166568 GTTGAGTTAG
*
27166578 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
27166604 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27166630 CATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27166975 original size:159 final size:158
Alignment explanation
Indices: 27166604--27166979 Score: 368
Period size: 159 Copynumber: 2.4 Consensus size: 158
27166594 TCCAGTCTAA
* * * ***
27166604 GCATAC-AGAGTTCATTCCCAGTCTAACATCGGACCGGACCAAGGGTTGCAACAGCAGGATTGGC
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGACCAGC
* * * * **
27166668 AGCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCAGCCTCTCGGGTCGACTGAGCAC
65 AGCATGCAGGGGGGACCGGGCCGAACCCCAGCTTGCGCAATCAGCCTCTCGGACCGACTGAGCAC
* *
27166733 CTGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * ** * * * ** *
27166762 GCATAGGGAGCTCATT-CCATGTCTAAG-CCCCAGTCGGACTGAGGATTGTGGCAGCGGGACCAG
1 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCAGCAGCAGGACCAG
* *
27166825 CAGCATGCAGAGGGGGACCGGGCCGAACCCCAGCTTGCGTAAT-ATGCCTCTTC-GACCGGCAT-
64 CAGCATGCAG-GGGGGACCGGGCCGAACCCCAGCTTGCGCAATCA-GCCTC-TCGGACCGAC-TG
* *
27166887 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
125 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
27166921 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACAGCAGCAGGA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGA
27166980 TTGATAGCAC
Statistics
Matches: 166, Mismatches: 43, Indels: 17
0.73 0.19 0.08
Matches are distributed among these distances:
157 5 0.03
158 48 0.29
159 105 0.63
160 8 0.05
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.20
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGACCAGCA
GCATGCAGGGGGGACCGGGCCGAACCCCAGCTTGCGCAATCAGCCTCTCGGACCGACTGAGCACC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:27167130 original size:26 final size:26
Alignment explanation
Indices: 27167081--27167132 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27167071 TTGGCTTAGC
* *
27167081 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGCTCATTCCATATCTAAG
27167107 CATACGGAGCTCATTCCCA-ATCTAAG
1 CATACGGAGCTCATT-CCATATCTAAG
27167133 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGGAGCTCATTCCATATCTAAG
Found at i:27168518 original size:159 final size:159
Alignment explanation
Indices: 27168330--27168687 Score: 364
Period size: 159 Copynumber: 2.3 Consensus size: 159
27168320 TGCCCATTTT
* * * * * *
27168330 GTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCCAG-CTGGACTGAGGGTTATG
1 GTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCGGACCGAGGGTTATG
* * * * *
27168394 GCAGCGGGACCGGTAGTACGCAGAGGGGGACTGGGCCGATCCCCAGCTTGCGCATT-ATGCCT-T
65 GCAGCAGGACCGATAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCA-GACTCT
* ** * *
27168457 TTCGGTCGGCTCAGTGCCCGCACGTTCGTTTC
129 CT-GGTCGGCTCAACGCCCGCAAGCTCGTTTC
* * * *** *
27168489 GTGGGCTGACTTATGCATATGGAGTTCATTCCCA-GTCTAAGATTGGACCGGACCGAGGGTTTTG
1 GTGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGACCGGACCGAGGGTTATG
* * * * * *
27168553 GCAGCAGGATCGATAGCACGCAGGGGGGGACCGGGTCGATCCTCGGCTTGTGCATTCAGACTCTC
65 GCAGCAGGACCGATAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCAGACTCTC
* *
27168618 TGGTCGGCTGAACGCCCGTAAGCTCGTTTC
130 TGGTCGGCTCAACGCCCGCAAGCTCGTTTC
*
27168648 GTGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 GTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAA
27168688 ACATATGGAG
Statistics
Matches: 160, Mismatches: 34, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
158 4 0.03
159 150 0.94
160 6 0.04
ACGTcount: A:0.17, C:0.25, G:0.33, T:0.25
Consensus pattern (159 bp):
GTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACCGGACCGAGGGTTATGG
CAGCAGGACCGATAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCAGACTCTCT
GGTCGGCTCAACGCCCGCAAGCTCGTTTC
Found at i:27169768 original size:171 final size:170
Alignment explanation
Indices: 27169461--27169780 Score: 459
Period size: 171 Copynumber: 1.9 Consensus size: 170
27169451 GGGTTGCGGC
** * *
27169461 AGCAGGATCGGTAGCATGCAGGGGGGACCGGGTCAATCCCCGACTTGCGTATTCTGCCTCTTCGA
1 AGCAGGATCGACAGCACGCAGGGGGGACCGGGTCAATCCCCGACTTGCATATTCTGCCTCTTCGA
* * *
27169526 TCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCATGTCG
66 CCGGCTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCATGTCG
27169591 AAGCCCCAGCCGGACCGAGGGTCGTGGCAGCAGGACTGGT
131 AAGCCCCAGCCGGACCGAGGGTCGTGGCAGCAGGACTGGT
*
27169631 AGCAGGATCGACAGCACGCAGAGGGGGACCGGG-CGGATCCCCTG-CTTGCATATTCTGCCTC-T
1 AGCAGGATCGACAGCACGCAG-GGGGGACCGGGTC-AATCCCC-GACTTGCATATTCTGCCTCTT
* * *
27169693 CTGGCCGGCTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCT-CATTCCA
63 C-GACCGGCTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAG-TACATTCCA
*
27169757 TGTCTAAGCCCCAGCCGGACCGAG
126 TGTCGAAGCCCCAGCCGGACCGAG
27169781 AGTTGTAGCA
Statistics
Matches: 133, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
170 21 0.16
171 110 0.83
172 2 0.02
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (170 bp):
AGCAGGATCGACAGCACGCAGGGGGGACCGGGTCAATCCCCGACTTGCATATTCTGCCTCTTCGA
CCGGCTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTACATTCCATGTCG
AAGCCCCAGCCGGACCGAGGGTCGTGGCAGCAGGACTGGT
Found at i:27169934 original size:159 final size:158
Alignment explanation
Indices: 27169635--27170079 Score: 424
Period size: 159 Copynumber: 2.8 Consensus size: 158
27169625 ACTGGTAGCA
*
27169635 GGATCGACAGCACGCAGAGGGGGACCGGGCGGATCCCCTG-CTTGCAT-ATTCTGCCTC-TCTGG
1 GGATCGACAGCACGCAGAGGGGGACCGGGCAGAT-CCCTGACTTG-ATCATTCTGCCTCTTC-GG
* * * * * * * *
27169697 CCGGCTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGCTCATT-CCATGTC
63 TC-GCTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTC
* * *
27169761 TAAGCCCCAGCCGGACCGAGAGTTGTAGCA-GC
127 TAAGCACCAGCCGGACCAAGAGTTGCAG-AGGC
** *
27169793 GGGATCGACAGCACGCAGAGGGGGACCGGGCCTATCCCTGACTTGATCATTATGCCTCTTCGGTC
1 -GGATCGACAGCACGCAGAGGGGGACCGGGCAGATCCCTGACTTGATCATTCTGCCTCTTCGGTC
* * *
27169858 AGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTA
65 -GCTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTA
* *
27169922 AG-ATCAGACCGGACCAAGGGTTGCAGAGGTC
129 AGCACCAG-CCGGACCAAGAGTTGCAGAGG-C
* * * * * * ** * *
27169953 AGATTGACAGCATGTA-AGGGGGACCGGGTAGATCCC-CAGCTTGCGCATTCTGCCTCTCCGATC
1 GGATCGACAGCACGCAGAGGGGGACCGGGCAGATCCCTGA-CTTGATCATTCTGCCTCTTCGGTC
* * *
27170016 GACTAAGGGCCCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTGATT-CCATGTCTA
65 G-CTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTA
27170080 CGCATACGGA
Statistics
Matches: 238, Mismatches: 38, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
157 5 0.02
158 99 0.42
159 128 0.54
160 6 0.03
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (158 bp):
GGATCGACAGCACGCAGAGGGGGACCGGGCAGATCCCTGACTTGATCATTCTGCCTCTTCGGTCG
CTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAG
CACCAGCCGGACCAAGAGTTGCAGAGGC
Found at i:27170795 original size:26 final size:26
Alignment explanation
Indices: 27170766--27170818 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27170756 GTTGACTTAG
*
27170766 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGCCTAA
*
27170792 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATCCCTAGCCTAA
27170818 G
1 G
27170819 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGCCTAA
Found at i:27171136 original size:26 final size:26
Alignment explanation
Indices: 27171100--27171152 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27171090 GTTGACTTAG
* *
27171100 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTAATCCCCAATCTAA
* *
27171126 GCATACAGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAATCTAA
27171152 G
1 G
27171153 ATTAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAATCTAA
Found at i:27172118 original size:26 final size:26
Alignment explanation
Indices: 27172065--27172120 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
27172055 TGGGTTGGCT
* * *
27172065 TAAGCATACGGAGTTCATTCCATGTC
1 TAAGCATACGGAGCTCATCCCATATC
27172091 TAAGCATACGGAGCTCAATCCCA-ATC
1 TAAGCATACGGAGCTC-ATCCCATATC
27172117 TAAG
1 TAAG
27172121 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGCTCATCCCATATC
Found at i:27173180 original size:26 final size:26
Alignment explanation
Indices: 27173144--27173195 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
27173134 GTTGACTTAG
27173144 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27173170 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27173196 AATCAGATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27173661 original size:158 final size:157
Alignment explanation
Indices: 27173170--27173670 Score: 490
Period size: 158 Copynumber: 3.2 Consensus size: 157
27173160 CCCAGTCTAA
* * *
27173170 GCATACGGAGTTCATTCCCA-GTCTAAAATCAGATCGGATCGAGGGTTAC-GTCAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGAACGAGGGTTACGGT-AGTAGGATCGA
* * ** * * * * *
27173233 CGGCACGCAAGGGGGG-CCGGACCGATCCCCAGCTTGCACATTTTGCCTCTCCGATCGGCTGAGT
64 CAGCACG-TAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTATCCG-CCGGCTGAGT
* * *
27173297 GCCCGTAAGCTCGTTTCATGGGTTGGCTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *** * * * * ** * *
27173328 GCATAGGGGGCTCATTCCATGTCTAATCCCCAG-CCGGACCAAGGGTTATGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAA-GATCAGACCGGAACGAGGGTTACGGTAGTAGGATCGAC
* * * *
27173392 AGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGTATTATGCCTTTTCGGCCGGCTGAGCGC
65 AGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCC-TATCCGCCGGCTGAGTGC
* * *
27173457 CCGCACGCTTGTTTCGTGGGTTGACTTAT
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * *
27173486 GTGTACGGAGTTAATTCCCA-GTCTAAGATCAGACCGGAACGAGGGTTGCGGTAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGAACGAGGGTTACGGTAGTAGGATCGAC
* * *
27173550 AGCACGTAGGGGGGACCGGGTCGGTCACCGGCTTGCGCATTCTGCCTATCCAGCCGGCTGAGTGC
65 AGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTATCC-GCCGGCTGAGTGC
27173615 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
27173644 GCATACAGATTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
27173671 CATACGGAGC
Statistics
Matches: 268, Mismatches: 66, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 19 0.07
158 238 0.89
159 11 0.04
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGAACGAGGGTTACGGTAGTAGGATCGACA
GCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTATCCGCCGGCTGAGTGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:27179457 original size:26 final size:26
Alignment explanation
Indices: 27179412--27179464 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27179402 GTTGGCTTAG
*
27179412 GCATACGGAGTTCACCCCCAGTCTAA
1 GCATACGGAGTTCACCCCCAGCCTAA
**
27179438 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCACCCCCAGCCTAA
27179464 G
1 G
27179465 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.32, G:0.21, T:0.21
Consensus pattern (26 bp):
GCATACGGAGTTCACCCCCAGCCTAA
Found at i:27180079 original size:160 final size:158
Alignment explanation
Indices: 27179656--27180112 Score: 472
Period size: 159 Copynumber: 2.9 Consensus size: 158
27179646 GCAGCAGGAC
* * *
27179656 CGACAGCGGGATCGACAGCACGTAGAGGGGGACCGGGTTGATCCCCGGCTTGCGCATTATGCCTC
1 CGACAGCGGGATCGACAGCACGTAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTC
** * *
27179721 TCCGACTGGCTGAGCGCCCGCACGCTCGTTTAATGGGTTGACTTAGGCATAGGGAGCTCATTCCA
66 TCCG-CCAGCTGAGCGCCCGCACGCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCA
* *
27179786 TGTCTAAGCCCTAGCCGGATCGAGCGTTG
130 TGTCTAAGACCTAGCCAGATCGAGCGTTG
* * * * * * * *
27179815 TGGCAGCGGGA-CCAGCAGCACGCAGAGGGGGATCGAGCCGATCCTCGACTTGCGCATGATGCCT
1 CGACAGCGGGATCGA-CAGCACGTAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCT
* * ** * * ** * *
27179879 CTTCGGCCAGCTCAGCGCTTGCATGCTTGTTTTTTGGGTTGACTTATATGCATACGGAGTTAATT
65 C-TCCGCCAGCTGAGCGCCCGCACGCTCGTTTAATGGGTTGAC-T-TAGGCATACGGAGTTCATT
* * *
27179944 CCCA-GTCTAAGATC-AGACTAGATCGAGGGTTG
127 -CCATGTCTAAGACCTAG-CCAGATCGAGCGTTG
* * * *
27179976 CGACAGCAGGATCGACAGCACGTAG-GGGGGATCGGGTCGATCCTCGGCTTGCGTATTCTGCCTG
1 CGACAGCGGGATCGACAGCACGTAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTC
* ** *
27180040 TCCAGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
66 TCC-GCCAGCTGAGCGCCCGCACGCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCA
27180105 TGTCTAAG
130 TGTCTAAG
27180113 CATATGGAGC
Statistics
Matches: 235, Mismatches: 54, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 26 0.11
159 82 0.35
160 67 0.29
161 52 0.22
162 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
CGACAGCGGGATCGACAGCACGTAGAGGGGGATCGGGTCGATCCTCGGCTTGCGCATTATGCCTC
TCCGCCAGCTGAGCGCCCGCACGCTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCAT
GTCTAAGACCTAGCCAGATCGAGCGTTG
Found at i:27180890 original size:159 final size:158
Alignment explanation
Indices: 27180592--27180938 Score: 385
Period size: 159 Copynumber: 2.2 Consensus size: 158
27180582 TTCGTGGGCT
* *
27180592 GATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGACAGCCCGCACGCTCGTTTCATGGGTT
1 GATCCCTGACTTGTGCATTATGCCTCTCCGATCGGCT-ACAGCCCGCACGCTCGTTTCATGGGTT
* * ** * * * *
27180657 GACTTAGGCATAGGGAGCTCATTCCATGTCTAAACCCTAGCTGGACTGAGGGTTGTGGTAGCGGG
65 GACTTAGGCATACGGAGCTCATTCCATGTCTAAACCCGAGCCAGACCGAGGGTTGCGGCAGCAGG
* *
27180722 ACCGACAGCACACAGAGGGGGATCGGGTC
130 ACCGACAGCACACAGAGGGGGACCGAGTC
* * * *
27180751 GATCCCTGACTTGTGCATGATGCCTCTTCGGTCGGCT-CAGCACCTGCATGCTCGTTTCATGGGT
1 GATCCCTGACTTGTGCATTATGCCTCTCCGATCGGCTACAGC-CC-GCACGCTCGTTTCATGGGT
* * ***
27180815 TGACTTATGCATACGGAGTTCATTCTCA-GTCTAAGTTCG-GACCAGACCGAGGGTTGCGGCAGC
64 TGACTTAGGCATACGGAGCTCATTC-CATGTCTAAACCCGAG-CCAGACCGAGGGTTGCGGCAGC
* * * * *
27180878 AGGATCGGCAGCACGCTGGGGGGGACCGAGTC
127 AGGACCGACAGCACACAGAGGGGGACCGAGTC
*
27180910 GATCCCTGACTTGTGCATTCTGCCTCTCC
1 GATCCCTGACTTGTGCATTATGCCTCTCC
27180939 AGCCGGCTGA
Statistics
Matches: 155, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
157 4 0.03
158 3 0.02
159 146 0.94
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
GATCCCTGACTTGTGCATTATGCCTCTCCGATCGGCTACAGCCCGCACGCTCGTTTCATGGGTTG
ACTTAGGCATACGGAGCTCATTCCATGTCTAAACCCGAGCCAGACCGAGGGTTGCGGCAGCAGGA
CCGACAGCACACAGAGGGGGACCGAGTC
Found at i:27181574 original size:898 final size:893
Alignment explanation
Indices: 27179694--27182461 Score: 4137
Period size: 898 Copynumber: 3.1 Consensus size: 893
27179684 GGGACCGGGT
* * *
27179694 TGATCCCCGGCTTGCGCATTATGCCTCTCCGA-CTGGCTGAGCGCCCGCACGCTCGTTTAATGGG
1 TGATCCCTGGCTTGCGCATTATGCCTCTCCGATC-GGCTGACCGCCCGCACGCTCGTTTCATGGG
* *
27179758 TTGACTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTAGCCGGA-TCGAGCGTTGTGGCAGC
65 TTGACTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTAGCTGGACT-GAGGGTTGTGGCAGC
* * *
27179822 GGGACC-AGCAGCACGCAGAGGGGGATCGAGCCGAT-CCTCGACTTGCGCATGATGCCTCTTCGG
129 GGGACCGA-CAGCACACAGAGGGGGATCGGGTCGATCCCT-GACTTGCGCATGATGCCTCTTCGG
* * * ** * *
27179885 CCAGCTCAGCGCTTGCATGCTTGTTTTTTGGGTTGACTTATATGCATACGGAGTTAATTCCCAGT
192 TCGGCTCAGCGCTTGCATGCTCGTTTCATGGGTTGAC-T-TATGCATACGGAGTTCATTCTCAGT
* * * * *
27179950 CTAAGATCAGACTAGATCGAGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGATCGGGTCG
255 CTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGT-GGGGGGACCGAGTCG
* * * * * * * *
27180015 AT-CCTCGGCTTGCGTATTCTGCCTGTCCAGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
319 ATCCCT-GGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCGCTCGAACGCTCCTTTCGTGGGTT
* * * *
27180079 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGCCCATTCGCAATCTAAGATTTT
383 AGCTTAGGCATATGGA-TTCATTCCATG-CTAAGCATA-GGAGCTCATTCCCAATCTAAGATTTT
* ** ** * *
27180144 GAGCCA-GGTACACATGCTAAGCGTGGGCATGTGCTGGTGCCACATTTTTTTTGCCCGGGGCACC
445 GAGCCACGGTGCACATGCTGGGCCCGGGCATGTGCTGGTGCCGCATTTTTTTTGCCCAGGGCACC
* * * *
27180208 ATCACCGGAGCATCGTCGGAGAG-CTTAACAGGCGGCATTGGGGGTTTCGACGATT-GGGGGGCC
510 ATCGCCGGAGCATCGTCGGAGAGAC-TAACCGGCGGCATTGGGGGTTCCGGCGATTGGGGGGGCC
27180271 GGGGGGTGTGCGCACATGATGTGCG-TGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCC
574 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCC
* *
27180335 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
639 CTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
* * *
27180400 GTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTCCACTTC
704 GTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTCTCCACTTC
* * *
27180465 GACTTTTTAGCTGAATTTTTTTGTGCATTACAAAAAAAATACAGGGATCACCTCTACCAAATTTG
769 GAGTTTTTAGCTGAATTTTTTTGTGCA-TCCAAAAAAAATACAAGGATCACCTCTACCAAATTTG
*
27180530 GGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAATAAGTTTCGTGGGC
833 GGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGTGGGC
*
27180591 TGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGACAGCCCGCACGCTCGTTTCATGGGT
1 TGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGACCGCCCGCACGCTCGTTTCATGGGT
* *
27180656 TGACTTAGGCATAGGGAGCTCATTCCATGTCTAAACCCTAGCTGGACTGAGGGTTGTGGTAGCGG
66 TGACTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTAGCTGGACTGAGGGTTGTGGCAGCGG
*
27180721 GACCGACAGCACACAGAGGGGGATCGGGTCGATCCCTGACTTGTGCATGATGCCTCTTCGGTCGG
131 GACCGACAGCACACAGAGGGGGATCGGGTCGATCCCTGACTTGCGCATGATGCCTCTTCGGTCGG
* * *
27180786 CTCAGCACCTGCATGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCTCAGTCTAAGT
196 CTCAGCGCTTGCATGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCTCAGTCTAAGA
* *
27180851 TCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCTGGGGGGGACCGAGTCGATCCC
261 TCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACG-T-GGGGGGACCGAGTCGATCCC
* * *
27180916 TGACTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCGCTCGAACGCTCCTTTTGTGGGTTCGCTTA
324 TGGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCGCTCGAACGCTCCTTTCGTGGGTTAGCTTA
27180981 GGCATATGGATTTCATTCCATGCCTAAGCATACGGAGCTCATTCCCAATCTAAGATTTTGAGCCA
389 GGCATATGGA-TTCATTCCATG-CTAAGCATA-GGAGCTCATTCCCAATCTAAGATTTTGAGCCA
* *
27181046 CGGTGCACATGCTGGGCCCGGGCATGTGCTGGTGCCGTATTTTTTTTGCCCAGCGCACCATCGCC
451 CGGTGCACATGCTGGGCCCGGGCATGTGCTGGTGCCGCATTTTTTTTGCCCAGGGCACCATCGCC
* *
27181111 GGAGAATCATCGGAGAGACTAACCGGCGGCATTGGGGGTTCCGGCGATTGGGGGGGCCGGGGGGT
516 GGAGCATCGTCGGAGAGACTAACCGGCGGCATTGGGGGTTCCGGCGATTGGGGGGGCCGGGGGGT
27181176 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCAACA
581 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCAACA
27181241 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAA
646 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAA
* *
27181306 TTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAACAGTCACAAAATCTTCTCCACTTCGAGTTTT
711 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTCTCCACTTCGAGTTTT
*
27181371 TAGCTGAATTTTTTTGTGCATCCAATAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAA
776 TAGCTGAATTTTTTTGTGCATCCAAAAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAA
* *
27181436 ACTCTTTCTAAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCATGGGC
841 ACTCTTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGTGGGC
* *
27181489 TGATCCCTGGCTTGTGCATTATGCCTCTCCGGTCGGCTGACCGCCCGCACGCTCGTTTCATGGGT
1 TGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGACCGCCCGCACGCTCGTTTCATGGGT
* * *
27181554 TGACTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTAGCTGGACTGAGGGTTATGCCAGTGG
66 TGACTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTAGCTGGACTGAGGGTTGTGGCAGCGG
* * *
27181619 GACCGGCAGCACACAGAGGGGGATCGGGTTGACCCCTGACTTGCGCATGATGCCTCTTCGGTCGG
131 GACCGACAGCACACAGAGGGGGATCGGGTCGATCCCTGACTTGCGCATGATGCCTCTTCGGTCGG
* * * *
27181684 CTCAGCGCTTGCACGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCTCATTCTAAGA
196 CTCAGCGCTTGCATGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCTCAGTCTAAGA
* * * * *
27181749 TCAGACCGGATCAAGGGTTGTGGCAGCAGGATTGGCAGCACGGTGGGGGGACC-AGGTCAATCCC
261 TCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCAC-GTGGGGGGACCGA-GTCGATCCC
* *
27181813 CGGCTTGTGCATTCTGCCTCTCCAACCGGCTGAGCGCTCGAACGCTCCTTTCGTGGGTTAGCTTA
324 TGGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCGCTCGAACGCTCCTTTCGTGGGTTAGCTTA
27181878 GGCATATGG---------A---T-----T------TCATTCCCAATCTAAGATTTTGAGCCACGG
389 GGCATATGGATTCATTCCATGCTAAGCATAGGAGCTCATTCCCAATCTAAGATTTTGAGCCACGG
* *
27181920 TGCACATGCTGGGCCCGGGCATGTGCTGGTGCGGCATTTTTTTTGCCCAGGGCACCATCGCTGGA
454 TGCACATGCTGGGCCCGGGCATGTGCTGGTGCCGCATTTTTTTTGCCCAGGGCACCATCGCCGGA
* *
27181985 GCATCGCCGGAGAGACTAACCGGCGGCATTGGGGGTTCCGGCGATTGGGGGGGTCGGGGGGTGTG
519 GCATCGTCGGAGAGACTAACCGGCGGCATTGGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTG
27182050 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCAACAAAC
584 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCAACAAAC
*
27182115 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCAATTA
649 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTA
*
27182180 AAGTGTCTGAAATGGGGACACTTTTTTTGAAATAGTCACAAAATCTTCTCCACTTCGAGTTTTTA
714 AAGTGTCTGAAATGGGGACAC-TTTTTTCAAATAGTCACAAAATCTTCTCCACTTCGAGTTTTTA
* *
27182245 GCTGAATTTTTTTGTGCATCCGACAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAAC
778 GCTGAATTTTTTTGTGCATCCAAAAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAAC
*
27182310 TCTTTCTAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCGTGGGC
843 TCTTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGTGGGC
* * *
27182361 TGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGACCGCTCGTACGCTCGTTTCATGCGT
1 TGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGACCGCCCGCACGCTCGTTTCATGGGT
* * *
27182426 TGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
66 TGACTTAGGCATAGGGAGCTCAT-TCCATGTCTAAGC
27182462 ATACAGAGTT
Statistics
Matches: 1725, Mismatches: 132, Indels: 53
0.90 0.07 0.03
Matches are distributed among these distances:
871 301 0.17
872 241 0.14
873 3 0.00
878 1 0.00
883 1 0.00
887 1 0.00
895 65 0.04
896 130 0.08
897 384 0.22
898 409 0.24
899 189 0.11
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.27
Consensus pattern (893 bp):
TGATCCCTGGCTTGCGCATTATGCCTCTCCGATCGGCTGACCGCCCGCACGCTCGTTTCATGGGT
TGACTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTAGCTGGACTGAGGGTTGTGGCAGCGG
GACCGACAGCACACAGAGGGGGATCGGGTCGATCCCTGACTTGCGCATGATGCCTCTTCGGTCGG
CTCAGCGCTTGCATGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCTCAGTCTAAGA
TCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTGGGGGGACCGAGTCGATCCCTG
GCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCGCTCGAACGCTCCTTTCGTGGGTTAGCTTAGG
CATATGGATTCATTCCATGCTAAGCATAGGAGCTCATTCCCAATCTAAGATTTTGAGCCACGGTG
CACATGCTGGGCCCGGGCATGTGCTGGTGCCGCATTTTTTTTGCCCAGGGCACCATCGCCGGAGC
ATCGTCGGAGAGACTAACCGGCGGCATTGGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCAACAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATCCAAAAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCT
TTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGTGGGC
Found at i:27181786 original size:159 final size:159
Alignment explanation
Indices: 27181493--27181789 Score: 339
Period size: 159 Copynumber: 1.9 Consensus size: 159
27181483 ATGGGCTGAT
* * * *
27181493 CCCTGGCTTGTGCATTATGCCTCTCCGGTCGGCTGACCGCCCGCACGCTCGTTTCATGGGTTGAC
1 CCCTGACTTGCGCATGATGCCTCTCCGGTCGGCTCACCGCCCGCACGCTCGTTTCATGGGTTGAC
** * * * **
27181558 TTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTAGCTGGACTGAGGGTTATGCCAGTGGGACC
66 TTAGGCATACAGAGCTCATTCCATGTCTAAGACCTAGCCGGACTAAGGGTTATGCCAGCAGGACC
27181623 GGCAGCACACAGAGGGGGATCGGGTTGAC
131 GGCAGCACACAGAGGGGGATCGGGTTGAC
* * ** *
27181652 CCCTGACTTGCGCATGATGCCTCTTCGGTCGGCTCAGCGCTTGCACGCTCGTTTCGTGGGTTGAC
1 CCCTGACTTGCGCATGATGCCTCTCCGGTCGGCTCACCGCCCGCACGCTCGTTTCATGGGTTGAC
* * * * *
27181717 TTATGCATACAGAGTTCATTCTCAT-TCTAAGATC-AGACCGGA-TCAAGGGTTGTGGCAGCAGG
66 TTAGGCATACAGAGCTCATTC-CATGTCTAAGACCTAG-CCGGACT-AAGGGTTATGCCAGCAGG
**
27181779 ATTGGCAGCAC
128 ACCGGCAGCAC
27181790 GGTGGGGGGA
Statistics
Matches: 112, Mismatches: 23, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
158 3 0.03
159 106 0.95
160 3 0.03
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (159 bp):
CCCTGACTTGCGCATGATGCCTCTCCGGTCGGCTCACCGCCCGCACGCTCGTTTCATGGGTTGAC
TTAGGCATACAGAGCTCATTCCATGTCTAAGACCTAGCCGGACTAAGGGTTATGCCAGCAGGACC
GGCAGCACACAGAGGGGGATCGGGTTGAC
Found at i:27182464 original size:26 final size:26
Alignment explanation
Indices: 27182434--27182512 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
27182424 GTTGACTTAG
*
27182434 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27182460 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
27182486 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27182512 G
1 G
27182513 ATTGGACTAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27182846 original size:158 final size:158
Alignment explanation
Indices: 27182559--27182987 Score: 490
Period size: 158 Copynumber: 2.7 Consensus size: 158
27182549 AGCACACAGG
* * *
27182559 GGGGATAGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGCACGCCC
1 GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTC
* * * * * * *
27182624 GTTTCATGGGTTGGCTCAGGCAT-TGGGAGCTCATTCCATGTCTGAGCCCCAACTGGACCGAGGG
66 GTTTCGTGGGTTGGCTTAGGCATAT-GGAGTTCATTCCATGTCTAAGCACCAACAGGACCAAGGG
** *
27182688 TTGTGGCAGCGGGACCGACAGCACGTAGA
130 TTACGGCAGCAGGACCGACAGCACGTAGA
* * * *
27182717 GGGGA-CTGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCT
1 GGGGATC-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCT
* * *
27182781 CGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCTCA-GTCTAAG-ATCAGACCAGG-CCAA
65 CGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTC-CATGTCTAAGCACCA-A-CAGGACCAA
* * *
27182843 GGGTTACGGTAGCAGGATCGACAGCACGTAGG
127 GGGTTACGGCAGCAGGACCGACAGCACGTAGA
* * * * * * *
27182875 GGGGATCGGGTCGATCCCCAGCTTGCGCGTTCTGCCTCTCCAGTCGGCTGAGCACCCGTACACTC
1 GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTC
* *
27182940 GTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 GTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCA
27182988 TACGGAGCTC
Statistics
Matches: 225, Mismatches: 38, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
157 4 0.02
158 213 0.95
159 8 0.04
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (158 bp):
GGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCACCAACAGGACCAAGGGT
TACGGCAGCAGGACCGACAGCACGTAGA
Found at i:27183009 original size:26 final size:26
Alignment explanation
Indices: 27182959--27183011 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27182949 GTTGGCTTAG
* *
27182959 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
27182985 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
27183011 G
1 G
27183012 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:27183752 original size:26 final size:26
Alignment explanation
Indices: 27183701--27183753 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27183691 GTTAGCTTAG
*
27183701 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGCCTAA
27183727 GCATACGGAGTTCATTCCC-AGCCTAA
1 GCATACGGAGTTCA-TCCCTAGCCTAA
27183753 G
1 G
27183754 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGCCTAA
Found at i:27184105 original size:26 final size:26
Alignment explanation
Indices: 27184069--27184121 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27184059 GTTGACTTAG
27184069 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
27184095 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27184121 G
1 G
27184122 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27184402 original size:159 final size:158
Alignment explanation
Indices: 27184135--27184597 Score: 402
Period size: 159 Copynumber: 2.9 Consensus size: 158
27184125 GGATCGGATC
** * * * * * *
27184135 GAGGGTTGCGGTAGCAGGATCGGCAGCACGCA-GGGGGACCGAGCCGATCTCCGACTTGCACATT
1 GAGGGTTGCGACAGCAGGATCGACAGCATGCAGGGGGGA-CGGGTCGATCACCGGCTTGCACATT
* * * * * * * * * *
27184199 CTGCCTCTCC-GACCAGCTGAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGC
65 ATGCCTCTCCGGATC-GCAGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGT
*
27184263 TCATTCCATGTCTAAGCCTCAG-CCAAACT
129 TCATTCCATGTCTAAGCATCAGACCAAACT
* ** * * * *
27184292 GAGGGTTGTGGTAGCGGGA-CTGACAGCATGCAGAGGGGGACCGGGTCGATCCCCTGCTTGCATA
1 GAGGGTTGCGACAGCAGGATC-GACAGCATGCAG-GGGGGA-CGGGTCGATCACCGGCTTGCACA
* * * * * *
27184356 TTATGCCTCTTC-GATCG-AGTCAGCGGCTGTACGCTCGTTTCGTGGGTTGACTTATGCATACAG
63 TTATGCCTCTCCGGATCGCAG--AGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAAGCATACGG
***
27184419 AGTTCATTCCCA-GTCTAAG-ATCAGACTGGACT
126 AGTTCATT-CCATGTCTAAGCATCAGACCAAACT
* * * *
27184451 GATGGTTGCGACAGCAGGATCGACAGCATGCAGGGGGGACGGGTTGATCACCGGCTTGCGCATTC
1 GAGGGTTGCGACAGCAGGATCGACAGCATGCAGGGGGGACGGGTCGATCACCGGCTTGCACATTA
* * * * *
27184516 TTCCTCTCCGGCTGGCAGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAAGCATACGTAGTTC
66 TGCCTCTCCGGATCGCAGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTC
27184581 ATTCCATGTCTAAGCAT
131 ATTCCATGTCTAAGCAT
27184598 ACGGAGCTCA
Statistics
Matches: 243, Mismatches: 51, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
156 4 0.02
157 104 0.43
158 16 0.07
159 115 0.47
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GAGGGTTGCGACAGCAGGATCGACAGCATGCAGGGGGGACGGGTCGATCACCGGCTTGCACATTA
TGCCTCTCCGGATCGCAGAGCGCCCGTACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTC
ATTCCATGTCTAAGCATCAGACCAAACT
Found at i:27184618 original size:26 final size:26
Alignment explanation
Indices: 27184565--27184620 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
27184555 TGGGTTGGCT
* * *
27184565 TAAGCATACGTAGTTCATTCCATGTC
1 TAAGCATACGGAGCTCATTCCACGTC
27184591 TAAGCATACGGAGCTCATTCC-CGATC
1 TAAGCATACGGAGCTCATTCCACG-TC
27184617 TAAG
1 TAAG
27184621 ATTTTGAGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGCTCATTCCACGTC
Found at i:27185336 original size:26 final size:26
Alignment explanation
Indices: 27185300--27185430 Score: 208
Period size: 26 Copynumber: 5.0 Consensus size: 26
27185290 GTTGACTTAG
27185300 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
**
27185326 GCATTTGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
27185352 GTATACAGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
27185378 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
**
27185404 GCATACAAAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
27185430 G
1 G
27185431 ATCGGACCGG
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 95 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:27186973 original size:26 final size:26
Alignment explanation
Indices: 27186944--27186996 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27186934 GTTGGCTTAG
*
27186944 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
27186970 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
27186996 G
1 G
27186997 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:27187341 original size:26 final size:26
Alignment explanation
Indices: 27187312--27187364 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27187302 GTTGACTTAG
27187312 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
27187338 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27187364 G
1 G
27187365 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27187805 original size:160 final size:155
Alignment explanation
Indices: 27187338--27187831 Score: 446
Period size: 158 Copynumber: 3.1 Consensus size: 155
27187328 CCCAGTCTAA
* * * * * *
27187338 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAGGATCGGAC-AGACCGAGGGTTGCGGCAGCAGGATCGACA
*
27187403 GCACGCA-GGGGGGATCGGGTCGATCCCCAACTTGCGCATTCTGCCTCTCCGACC-AGCTGAGCG
65 GCACGCAGGGGGGGATCGGGTCGATCCCC-ACTTGAGCATTCTGCCTCTCCGACCGA-CTGAGC-
*
27187466 CCCGCACGCCTGTTTCGTGGGTTGGCTTAG
127 CCCGCAC-ACTGTTTCGTGGGTTGGCTTAG
* *** * * * *
27187496 GCAT-CGGGAGCTCA-TCCATA-TCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAG-AGAGACCG
1 GCATAC-GGAGTTCATTCC-TAGTCT-AGGATCGGACAGACCGAGGGTTGCGGCAGCAG-GATCG
** * * * * * * *
27187557 GTAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCA-CATTATGCCTCTTCGATCGGCTTA
62 ACAGCACGCAGGGGGGGATCGGGTCGATCCCCA-CTTG-AGCATTCTGCCTCTCCGACCGACTGA
* * * *
27187621 GCCCCTGCTCGCTCGTTTCGTGGGTTGACTTAT
125 GCCCC-GCACACT-GTTTCGTGGGTTGGCTTAG
* * *
27187654 GCATACGGGGTTCATTCCTAGCCTAGGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAGGATCGGACAG-ACCGAGGGTTGCGGCAGCAGGATCGACA
* *
27187719 GCACACAGGGGGGGGA-CTGGGTCGATCCCCGACTTGAGCATTCTGCCTCTCCGGCCGACTGAGC
65 GCACGCA-GGGGGGGATC-GGGTCGATCCCC-ACTTGAGCATTCTGCCTCTCCGACCGACTGAGC
27187783 ACCCGCACACTAGTTTCGTGGGTTGGCTTAG
127 -CCCGCACACT-GTTTCGTGGGTTGGCTTAG
*
27187814 GCATACGGAGTTTATTCC
1 GCATACGGAGTTCATTCC
27187832 ATGTCTAAGC
Statistics
Matches: 259, Mismatches: 57, Indels: 38
0.73 0.16 0.11
Matches are distributed among these distances:
156 2 0.01
157 40 0.15
158 96 0.37
159 35 0.14
160 82 0.32
161 4 0.02
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCTAGTCTAGGATCGGACAGACCGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGGGGGATCGGGTCGATCCCCACTTGAGCATTCTGCCTCTCCGACCGACTGAGCCCCG
CACACTGTTTCGTGGGTTGGCTTAG
Found at i:27188913 original size:26 final size:26
Alignment explanation
Indices: 27188877--27188927 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
27188867 CAACCTAGGC
*
27188877 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGAAGTTCATCCCCAGTCTAAGT
*
27188903 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
27188928 ATTGAACCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGT
Found at i:27189183 original size:367 final size:367
Alignment explanation
Indices: 27188458--27189476 Score: 1276
Period size: 367 Copynumber: 2.8 Consensus size: 367
27188448 TGCATCCTAT
* * *
27188458 CTCTCTGGTCGGCTGAGCACCCGCACACTCGTTGCGTGGGTTAACCTAGGCATACGGAGTTCATC
1 CTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACCTAGGCATACGGAGTTCATC
* * *
27188523 CCCAATCTAAGCATACAGAGTTCATTCCCAGACTAAGATCAGACCGGATCGAGGGTTGCGGTCA-
66 CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGG-CAG
* * * * * * * *
27188587 CAGGATCAATAGCACGTAAGAGGGACCAGGCCGATCCTCGGCCTGGGCATTCTGCCTCTCCGACC
130 TAGGATCGATAGCACG-CAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACC
* * * * *
27188652 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTATGCGTACGGAGTACATTCCGCGTCTAA
194 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAA
* * * * * * *
27188717 GCCCCAGCCGAACCAAGGGTTCTGGTAGCAGGACTGGCAGCAAGATCGACAGCACGCAGAGGGGG
259 GCCCCAACCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCAAGATCGACAGCACGCAGACGGGG
** * *
27188782 ACCGAGCTGATCCTCGGCTTGTACATTATGCCTCTCTAATCGGC
324 ACCGAGCTGATCCTCAACCTGTACATTATGCCTCTCCAATCGGC
* * * *
27188826 CTCTCCGG-CTGGCTGAGCGCCCGCACGCTTGTTTCGCGGGTCAACCTAGGCATACGGAGTTCAT
1 CTCTCCGGTC-GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACCTAGGCATACGGAGTTCAT
* * *
27188890 CCCCAGTCTAAGTATAC-GAAGTTCATTCCCAGTCTAAGAT-TGAACCAAATCGAGGGTTGCGGC
65 CCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCAG-ACCGAATCGAGGGTTGCGGC
*
27188953 AGTAGGATCGATAGCACGCAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGAC
128 AGTAGGATCGATAGCACGCAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAC
* * *
27189018 CGACTGAGGGCCCACACGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTA
193 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTA
* * ** * *
27189083 AGCCCCAACCGGACCGAGGGTTGTGGTAGCATGACCGATAGCGGGATCGGCAGCACGTAGACGGG
258 AGCCCCAACCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCAAGATCGACAGCACGCAGACGGG
* * * * * *
27189148 GATCGGGTTGATCC-CTAACCTGTGCATTCTGCCTCTCCGATCGGC
323 GACCGAGCTGATCCTC-AACCTGTACATTATGCCTCTCCAATCGGC
* * * * * *
27189193 CTCTTCGGTCAGCTGAACACCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATC
1 CTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACCTAGGCATACGGAGTTCATC
* * * *
27189258 CCCAGTCTAAGCATACAGAGTGCATTCCCAGTCTAAGATCAGACCGAATTGAAGGTTGCGACAGT
66 CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGCAGT
* * * *
27189323 AGGATCGATAGCACACAGAGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCAGGCCG
131 AGGATCGATAGCACGCAG-GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG
* * *
27189388 ACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGCT-CATTCCATGTCTAA
195 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAA
* *
27189452 GCCCCAATCGGGCCGAGGGTTGTGG
259 GCCCCAACCGGACCGAGGGTTGTGG
27189477 CAGTGGGACC
Statistics
Matches: 558, Mismatches: 83, Indels: 20
0.84 0.13 0.03
Matches are distributed among these distances:
366 1 0.00
367 311 0.56
368 245 0.44
369 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (367 bp):
CTCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACCTAGGCATACGGAGTTCATC
CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGCAGT
AGGATCGATAGCACGCAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGA
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGC
CCCAACCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCAAGATCGACAGCACGCAGACGGGGAC
CGAGCTGATCCTCAACCTGTACATTATGCCTCTCCAATCGGC
Found at i:27189278 original size:26 final size:26
Alignment explanation
Indices: 27189242--27189294 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27189232 GTTGACTTAG
* *
27189242 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTGCATCCCCAGTCTAA
*
27189268 GCATACAGAGTGCATTCCCAGTCTAA
1 GCATACAGAGTGCATCCCCAGTCTAA
27189294 G
1 G
27189295 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTGCATCCCCAGTCTAA
Found at i:27190380 original size:26 final size:26
Alignment explanation
Indices: 27190351--27190403 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27190341 GTTGACTTAG
27190351 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * * *
27190377 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27190403 G
1 G
27190404 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27190755 original size:26 final size:26
Alignment explanation
Indices: 27190719--27190771 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27190709 GTTGACTTAG
27190719 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
27190745 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27190771 G
1 G
27190772 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27191945 original size:26 final size:26
Alignment explanation
Indices: 27191915--27191967 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
27191905 GTTGACTTAG
27191915 GCATAC-AGAGTTCA-TCCCTAGTCTAA
1 GCATACGA-AGTTCATTCCC-AGTCTAA
27191941 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
27191967 G
1 G
27191968 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:27192227 original size:26 final size:26
Alignment explanation
Indices: 27192191--27192269 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
27192181 GTTGATTTAG
*
27192191 GCATACAGAGTTCATCTCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27192217 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
27192243 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27192269 G
1 G
27192270 ATAAGATCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27192728 original size:158 final size:159
Alignment explanation
Indices: 27192314--27192745 Score: 438
Period size: 159 Copynumber: 2.7 Consensus size: 159
27192304 GGCAGCACAT
* * * * *
27192314 AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCAGCCTCTCCGATCGGCTGAGCACCCACACGC
1 AGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCACACGC
* * * * * * * * *
27192379 CCGTTTCGTGGCTTAGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCTAGTCAGACCGAGG
66 TCGTTTCGTGGATTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACTAGACAGACAGAGG
** * *
27192444 GTTGTGGTAGCGGGACCGACAGCACGCAG
131 GTTACGATAGCAGGACCGACAGCACGCAG
* * * * * * * ** * **
27192473 AGGGGGATCGGGTCGATCCCCGACTTCCGCATTATGTCTCTTCGGCTAGCTCAGCGCCTGCACGC
1 AGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCACACGC
* * * * * * * *
27192538 TCATTTCATGCATTGACTTATGCATACGAAGTTCATTCC-TAGTCTAAG-ATTGGACAAGATAGA
66 TCGTTTCGTGGATTGGCTTAGGCATACGAAGTTCATTCCAT-GTCTAAGCACTAGAC-AGACAGA
* *
27192601 GGGTTACGATAGCAGGATCGATAGCACGCA-
129 GGGTTACGATAGCAGGACCGACAGCACGCAG
* *
27192631 AGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAACGCCCACATGC
1 AGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCACACGC
*
27192696 TCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
66 TCGTTTCGTGGATTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
27192746 TACGGAGCTC
Statistics
Matches: 210, Mismatches: 59, Indels: 8
0.76 0.21 0.03
Matches are distributed among these distances:
158 95 0.45
159 115 0.55
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (159 bp):
AGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCACACGC
TCGTTTCGTGGATTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACTAGACAGACAGAGG
GTTACGATAGCAGGACCGACAGCACGCAG
Found at i:27192757 original size:26 final size:26
Alignment explanation
Indices: 27192717--27192769 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27192707 GTTGGCTTAG
*
27192717 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGCTCATTCCCA-GTCTAA
*
27192743 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
27192769 G
1 G
27192770 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:27193470 original size:26 final size:26
Alignment explanation
Indices: 27193440--27193492 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27193430 GTTGACTTAG
27193440 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27193466 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27193492 G
1 G
27193493 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27193825 original size:26 final size:26
Alignment explanation
Indices: 27193795--27193847 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27193785 GTTGACTTAG
*
27193795 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
27193821 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27193847 G
1 G
27193848 ATCGGGTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27194171 original size:159 final size:159
Alignment explanation
Indices: 27194000--27194303 Score: 337
Period size: 160 Copynumber: 1.9 Consensus size: 159
27193990 TAAGCCCCAG
* * *
27194000 TCGGACCGAGGGTT-ATGGCAGC-GAAATCGACAACACACAGAG-GGGGACCGGGCCGATCCTCG
1 TCGGACCGAGGGTTCA-AGCAGCAG-AATCAACAACACACAG-GTGGGGACCGGGCCGATCCCCG
* * * *
27194062 GCTTGCACATTATGCCTC-CTTGGCCAGCTCAACGCCCACACGCTCGTTTCGTGGGTTGACTTAT
63 GCTTGCACATTATACCTCTC-TGACCAGCTCAACGCCCACACACTCGTTTCGTGGGTTGACTTAA
27194126 GCATACGGAGTTCATTCCCAGTATAATATCAGA
127 GCATACGGAGTTCATTCCCAGTATAATATCAGA
* * * ** **
27194159 TCGGACTGAGGGTTGCAAGCAGCAGGATCAACAGCATGCAGGTGGGGACCGGGTTGATCCCCGGC
1 TCGGACCGAGGGTT-CAAGCAGCAGAATCAACAACACACAGGTGGGGACCGGGCCGATCCCCGGC
* * * * * * * *
27194224 TTGCGCATTCTACCTCTCTGACCGGCTGAGCGCCCGCACACTCGTTTTGTGGGTTGGCTTAAGCA
65 TTGCACATTATACCTCTCTGACCAGCTCAACGCCCACACACTCGTTTCGTGGGTTGACTTAAGCA
27194289 TACGGAGTTCATTCC
130 TACGGAGTTCATTCC
27194304 ATGTCTAAGC
Statistics
Matches: 118, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
159 14 0.12
160 101 0.86
161 3 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
TCGGACCGAGGGTTCAAGCAGCAGAATCAACAACACACAGGTGGGGACCGGGCCGATCCCCGGCT
TGCACATTATACCTCTCTGACCAGCTCAACGCCCACACACTCGTTTCGTGGGTTGACTTAAGCAT
ACGGAGTTCATTCCCAGTATAATATCAGA
Found at i:27194319 original size:26 final size:26
Alignment explanation
Indices: 27194283--27194338 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
27194273 TGGGTTGGCT
*
27194283 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGCTCATTCCCA-GTC
27194309 TAAGCATACGGAGCTCATTCCCAGTC
1 TAAGCATACGGAGCTCATTCCCAGTC
27194335 TAAG
1 TAAG
27194339 ATTTTGAGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGCTCATTCCCAGTC
Found at i:27195046 original size:26 final size:26
Alignment explanation
Indices: 27195010--27195062 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27195000 GTTGACTTAG
*
27195010 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
27195036 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27195062 G
1 G
27195063 ATTGAATTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27195516 original size:158 final size:155
Alignment explanation
Indices: 27195087--27195539 Score: 412
Period size: 158 Copynumber: 2.9 Consensus size: 155
27195077 AGAGTTACGA
* * * * *
27195087 CAGCAGGATCGACAGCACGCAGGGGAGATCGGGTTGATCCTCGGCTTAAGCATTCTGCCTCTCCG
1 CAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGAGCATTCTGCCTCTCC-
* * * * * *
27195152 GCCGGCTGAGCGCCTGCACGCCCGTTTCATGGGTTAGCTTAGGCATAGGGAGCTCATTCCATGTC
65 GCCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* **
27195217 TAAGCCCCAGTTGGACCGAGGGTTGTGG
130 TAAGCACCAGTTGGA-CGA-GGTTGCAG
* * * * * * * *
27195245 CAGCGGGATCGGCAGCATGCAGAAGGGGG-CCGGG-CTGATCCCCAGTTTGCGTATTATGCCTCT
1 CAGCAGGATCGACAGCACGCAG--GGGGGACCGGGTC-GATCCCCGGCTTGAGCATTCTGCCTCT
* * * * * * * * * *
27195308 TCGGCTAGTTCAGCGCCTGCATGCTTGTTTCGTGGCTTGACTTATGCATACGGAGTTCATTCTCA
63 CCGCCGA-CTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CA
*
27195373 -GTCTAAGATCAGACCAGTTTGA-GA-GTTGCAG
126 TGTCTAAG--C--ACCAGTTGGACGAGGTTGCAG
*
27195404 CAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCG
1 CAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGAGCATTCTGCCTCTCCG
* * *
27195469 ACCGACTGAGCACCTGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTC
66 -CCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
*
27195534 CAAGCA
130 TAAGCA
27195540 TACGGAGCTC
Statistics
Matches: 228, Mismatches: 54, Indels: 30
0.73 0.17 0.10
Matches are distributed among these distances:
154 1 0.00
156 1 0.00
157 7 0.03
158 101 0.44
159 101 0.44
160 6 0.03
161 3 0.01
163 8 0.04
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (155 bp):
CAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGAGCATTCTGCCTCTCCG
CCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCACCAGTTGGACGAGGTTGCAG
Found at i:27196905 original size:159 final size:159
Alignment explanation
Indices: 27196643--27197105 Score: 432
Period size: 159 Copynumber: 2.9 Consensus size: 159
27196633 GATCGGACCA
* * * * ** * * * *
27196643 AGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTACGTATTC
1 AGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTA
* * * * * * * * * *
27196708 TGCCTTTCCGATCGGCTGAGCGCCCGCAC-ATCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCT
66 TACCTCTCCGACCAGCTCAACGCCCGCACGCT-CGTTTCGTGGGTTGGCTTAAGCATACGGAGTT
* **
27196772 CATTCCATGTCTAAGCCCCA-ACCGGACCG
130 CATTCCATGTCTAAGCACCAGACCAAACCG
* * **
27196801 AGGGTTGTGGCAGC-GAGACCGACAGCATGCAGAGGGGGACCGGGTCGATCCTTGGCTTGCGCAT
1 AGGGTTGTGGCAGCAG-GACCGACAGCACGCAG-GGGGGACCAGGTCGATCCCCGGCTTGCGCAT
* * * * * *
27196865 TATGCCTCTTCGGCCAGCTCAATGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGT
64 TATACCTCTCCGACCAGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGT
* *
27196930 TCATTCCCA-GTGTAAG-ATCAGACCAAACCG
129 TCATT-CCATGTCTAAGCACCAGACCAAACCG
* * * *
27196960 AGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCAGGTTGATCCCCGGCTTGTGCATTC
1 AGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTA
* * * * * * *
27197025 TACCTCTCCGACCGGCTGAGCGCCCGTACGTTCGTTTTGTGGGTTGGCTTAAGCATACGGAGTTA
66 TACCTCTCCGACCAGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTC
*
27197090 ATTCCGTGTCTAAGCA
131 ATTCCATGTCTAAGCA
27197106 TACGGAGCTC
Statistics
Matches: 244, Mismatches: 53, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 115 0.47
159 121 0.50
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
AGGGTTGTGGCAGCAGGACCGACAGCACGCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTA
TACCTCTCCGACCAGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGTTC
ATTCCATGTCTAAGCACCAGACCAAACCG
Found at i:27197081 original size:158 final size:158
Alignment explanation
Indices: 27196599--27197103 Score: 521
Period size: 158 Copynumber: 3.2 Consensus size: 158
27196589 ATCCCCAGTC
* * * * * * * *
27196599 TAAGCATACGGATTTCATTCCCAGTCTAGGAACGGATCGGACCAAGGGTTGCGACAGTAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGAACAGACCGGACCGAGGGTTGTGGCAGCAGGATCG
* * * * * *
27196664 ACAGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTACGTATTCTGCCTTTCCGATCGGCTGAGC
66 ACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* *
27196729 GCCCGCACATCCGTTTCGTGGGTTGGCT
131 GCCCGCACGTTCGTTTCGTGGGTTGGCT
* * * **
27196757 TAGGCATAGGGAGCTCATT-CCATGTCTAAGCCCCA-ACCGGACCGAGGGTTGTGGCAGC-GAGA
1 TAAGCATACGGAGTTCATTCCCA-GTCTAAG-AACAGACCGGACCGAGGGTTGTGGCAGCAG-GA
* * ** * * * *
27196819 CCGACAGCATGCAGAGGGGGACCGGGTCGATCCTTGGCTTGCGCATTATGCCTCTTCGGCCAGCT
63 TCGACAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCT
* ** * *
27196884 CAATGCCCGCACGCTCGTTTCGTGGGTTGACT
127 GAGCGCCCGCACGTTCGTTTCGTGGGTTGGCT
* * * **
27196916 TATGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAAACCGAGGGTTGTGGCAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGAACAGACCGGACCGAGGGTTGTGGCAGCAGGATCG
* * * *
27196981 ACAGCACGCAGGGGGGACCAGGTTGATCCCCGGCTTGTGCATTCTACCTCTCCGACCGGCTGAGC
66 ACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
* *
27197046 GCCCGTACGTTCGTTTTGTGGGTTGGCT
131 GCCCGCACGTTCGTTTCGTGGGTTGGCT
* **
27197074 TAAGCATACGGAGTTAATTCCGTGTCTAAG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAG
27197104 CATACGGAGC
Statistics
Matches: 274, Mismatches: 66, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
157 4 0.01
158 145 0.53
159 121 0.44
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGAACAGACCGGACCGAGGGTTGTGGCAGCAGGATCG
ACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGC
GCCCGCACGTTCGTTTCGTGGGTTGGCT
Found at i:27197126 original size:26 final size:26
Alignment explanation
Indices: 27197074--27197128 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
27197064 TGGGTTGGCT
* **
27197074 TAAGCATACGGAGTTAATTCCGTGTC
1 TAAGCATACGGAGCTAATTCCCAGTC
*
27197100 TAAGCATACGGAGCTCATTCCCAGTC
1 TAAGCATACGGAGCTAATTCCCAGTC
27197126 TAA
1 TAA
27197129 TATTTTGAGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGCTAATTCCCAGTC
Found at i:27198338 original size:26 final size:26
Alignment explanation
Indices: 27198298--27198350 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27198288 GTTGGCTTAG
*
27198298 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
27198324 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
27198350 G
1 G
27198351 ATTTTTGTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:27199057 original size:26 final size:26
Alignment explanation
Indices: 27199020--27199072 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27199010 GTTGACTTAG
*
27199020 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGACTAA
*
27199046 GCATAC-AGAGTTCATTCCCAGACTAA
1 GCATACGA-AGTTCATCCCCAGACTAA
27199072 G
1 G
27199073 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGACTAA
Found at i:27199774 original size:159 final size:157
Alignment explanation
Indices: 27199416--27199914 Score: 361
Period size: 159 Copynumber: 3.2 Consensus size: 157
27199406 TAGTCGAAGT
* * * *
27199416 ATACGGAGTTCATTCGCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAACTGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAACGGGACCGACAGC
* * * *
27199481 ACACAGGGGGACTAGGCCGATCCCCGACTTGCGTATGCTGCCTGTCTGACTGGCTGAGCGCCCGC
66 ACACAGGGGGACTAGGCCGATCCCCGACTTGCGCATGATGCCTGTCTGACTGGCTCAGCACCCGC
* * *
27199546 ACTCCCATTTCATGGGTTGGCTTAGGC
131 ACTACCATTTCATGGGTTGACTTAGAC
* * * ** * * * * * *
27199573 ATAGGGAGCTCATT-CCATGTCCAAGCCCCAG-CCGAACAGAGGGTTGTGGTAGCGGGACCGACA
1 ATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGACCGAGGGTTGCGGCAACGGGACCGACA
* * * * * *
27199636 GCACGTAGAGGGGGACTGGGCCGATCCCCGGCTTGTGCATTATGCCT-TTTCGTA-TGGCTCAGC
64 GCAC--ACAGGGGGACTAGGCCGATCCCCGACTTGCGCATGATGCCTGTCT-G-ACTGGCTCAGC
* *
27199699 ACCCGCAC-ACTAGTTTCATGGGTTGACTTATAC
125 ACCCGCACTACCA-TTTCATGGGTTGACTTAGAC
** * * *
27199732 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAACAGCAAGG-TCGACAG
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAAC-GGGACCGACAG
** * * * ** * * ** * *
27199796 CATGCAGAGGGGAGC-AGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACTGTATGAGCGCC
65 CACACAG-GGGGA-CTAGGCCGATCCCCGACTTGCGCATGATGCCTGTCTGACTGGCTCAGCACC
* *
27199860 CGCAC-ACTCGTTTCATGGGTT-AGCTTAGGC
128 CGCACTAC-CATTTCATGGGTTGA-CTTAGAC
27199890 ATACGGAGTTCATT-CCACGTCTAAG
1 ATACGGAGTTCATTCCCA-GTCTAAG
27199915 CATACGGAGC
Statistics
Matches: 263, Mismatches: 62, Indels: 33
0.73 0.17 0.09
Matches are distributed among these distances:
156 2 0.01
157 53 0.20
158 92 0.35
159 110 0.42
160 6 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (157 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAACGGGACCGACAGC
ACACAGGGGGACTAGGCCGATCCCCGACTTGCGCATGATGCCTGTCTGACTGGCTCAGCACCCGC
ACTACCATTTCATGGGTTGACTTAGAC
Found at i:27199918 original size:26 final size:26
Alignment explanation
Indices: 27199888--27199940 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27199878 GTTAGCTTAG
*
27199888 GCATACGGAGTTCATT-CCACGTCTAA
1 GCATACGGAGCTCATTCCCA-GTCTAA
27199914 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
27199940 G
1 G
27199941 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:27201216 original size:159 final size:157
Alignment explanation
Indices: 27201013--27201431 Score: 477
Period size: 159 Copynumber: 2.6 Consensus size: 157
27201003 GGGACTGGGT
* * *
27201013 CGATCCCC-AGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCCCCCGTACG-TCCGTTTCGTGA
1 CGATCCCCGA-CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCCCCCGCACGCT-CGTTTCGTGG
* * * * * * *
27201076 GTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCGCTAGTCGGACCGAGTGTTGTGGTAGC
64 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCG-GA-CCGGACCGAGGGTTGCGGCAGC
* * *
27201141 AGGACCGGCAGCACATAGA-GGGGGATCAGGC
127 AGGACCGACAGCACACA-ATGGGGGACCAGGC
* * * * *
27201172 CGATCCCTGACTTGCGCATTATGCCTCTTCGGCCGGCTCAGCCCCCGCACGCTCGTTCCGTGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCCCCCGCACGCTCGTTTCGTGGGT
* *
27201237 TGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
66 TGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG--CGGACCGGACCGAGGGTTGCGGCAGCA
* * * * *
27201301 GGATCGACAGCACGCAATGGGGGCCCGGGT
128 GGACCGACAGCACACAATGGGGGACCAGGC
* * * *
27201331 TGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCCCCCGCACGCTCGTTTCGTGGGT
27201396 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
27201432 ATACGGAGCT
Statistics
Matches: 217, Mismatches: 36, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
157 1 0.00
158 4 0.02
159 204 0.94
160 6 0.03
161 2 0.01
ACGTcount: A:0.17, C:0.31, G:0.30, T:0.23
Consensus pattern (157 bp):
CGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCCCCCGCACGCTCGTTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGGACCGGACCGAGGGTTGCGGCAGCAGGA
CCGACAGCACACAATGGGGGACCAGGC
Found at i:27203356 original size:26 final size:26
Alignment explanation
Indices: 27203326--27203378 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27203316 GTTGACTTAG
27203326 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
27203352 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27203378 G
1 G
27203379 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27203631 original size:368 final size:366
Alignment explanation
Indices: 27202909--27203879 Score: 1160
Period size: 368 Copynumber: 2.6 Consensus size: 366
27202899 GCGCATCCTG
* * *
27202909 CCTCTCTGGTCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCAT
1 CCTCTCT-GTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT
* * *
27202974 CCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATTGGATCAAGGGTTGCGGTAG
65 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAG
* * ** * * * * * *
27203039 CAGGATCGATAGTATGCAATGGAGA-TCGAGCCGATCCCCGGCTTACGCATT-TGCCTCTCTGGC
130 CAGGATCGATAGCACGCAGGGGGGACT-GGGCCGAT-CCCTGCTTGCGCATTCTGCCTCTCCGAC
* * * * *
27203102 CAGCTGAGTGCCCGCACACTTATTTCATGGGTTGGCTTAGGCATACATAGTACATTCCACGTCTA
193 CGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTA
* * *
27203167 AGCCGCAGCCAGACCGAGGGTTATGGAAGCAGGACCGACAGTTGGATCGATAGCACACAGAGGGG
258 AGCCCCAGCCAGACCGAGGGTTATGGAAGCAGGACCGACAGTCGGATCGACAGCACACAGAGGGG
* ** * * *
27203232 GATCGAGCTGATCCCCAGCTTTTGTATTATGCCT-CTTCGGCCGA
323 GATCGAGCTAATCCCCAGCTTGCGCATTATGCCTCCCT-GACCGA
* *
27203276 CCTCTCCTGTCGGTTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT
1 CCTCT-CTGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT
*
27203341 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAG
65 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAG
* * * *
27203406 CAGGATCGACAGCACGCAGGGGGGACTGGGTCGATCCCTTACTTGCGCATTCTGCCTCTCCGATC
130 CAGGATCGATAGCACGCAGGGGGGACTGGGCCGATCCC-TGCTTGCGCATTCTGCCTCTCCGACC
* * ** *
27203471 GGTTGAGTGCCCGCACGCTCGTTTCATGACTTGGCTTAGGCATACGGAGTACATTCCACATCTAA
194 GGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAA
*** * * * * *
27203536 GCCCCAGTTGGACTGAGGGTTATGGTAGCAGGACCGGCAG-CGAGATTGACAGCACGCAGAGGGG
259 GCCCCAGCCAGACCGAGGGTTATGGAAGCAGGACCGACAGTCG-GATCGACAGCACACAGAGGGG
* * * *
27203600 GATCGGGCTAATCCCCGGCTTGCGCATTATGCCTCCCTGATCGG
323 GATCGAGCTAATCCCCAGCTTGCGCATTATGCCTCCCTGACCGA
* * * * * * *
27203644 CCTTTACGGTCGGCTAAGCACCCACACTCTTGTTTCATGGGTTGACTTAGGCATAC-GAAGTTCA
1 CCTCT-CTGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAG-AGTTCA
* * * * * * *
27203708 TCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCCGACCGGACCGAGGGTTGTGGCA
64 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTA
* *
27203773 GCAGGATCGGTAGCACGCAGGGGGGACTTGGCCGATCCCTGCTTGCGCATTCTGCCTCTCCGACC
129 GCAGGATCGATAGCACGCAGGGGGGACTGGGCCGATCCCTGCTTGCGCATTCTGCCTCTCCGACC
* * * *
27203838 GGCTGAGCGCCCGTACGCCCATTTCGTGGGTTGGCTTAGGCA
194 GGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCA
27203880 AAGGGAGCTC
Statistics
Matches: 512, Mismatches: 85, Indels: 14
0.84 0.14 0.02
Matches are distributed among these distances:
366 3 0.01
367 212 0.41
368 295 0.58
369 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (366 bp):
CCTCTCTGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATC
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGC
AGGATCGATAGCACGCAGGGGGGACTGGGCCGATCCCTGCTTGCGCATTCTGCCTCTCCGACCGG
CTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACATCTAAGC
CCCAGCCAGACCGAGGGTTATGGAAGCAGGACCGACAGTCGGATCGACAGCACACAGAGGGGGAT
CGAGCTAATCCCCAGCTTGCGCATTATGCCTCCCTGACCGA
Found at i:27203724 original size:26 final size:26
Alignment explanation
Indices: 27203694--27203746 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27203684 GTTGACTTAG
27203694 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
* *
27203720 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27203746 G
1 G
27203747 ATCCGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27204040 original size:148 final size:146
Alignment explanation
Indices: 27203753--27204043 Score: 334
Period size: 148 Copynumber: 2.0 Consensus size: 146
27203743 TAAGATCCGA
* * * * *
27203753 CCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGGGGGGACTTGGCCGATCCCTGCTTG
1 CCGGACCGAGGGCTGTGGCAGCAGGACCGGCAGCACGCAGGGGGGACTCGGCCGATCCCGGCTTG
* * * * *
27203818 CGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCCCATTTCGTGGGTTGGCTTAGGCAAAG
66 CGCATTATGCCTCTCCGACCGGCTCAACGCCCGCACGCCCATTTCGTGGGTTGACTTAGGCAAAG
*
27203883 GGAGCTCATTCCCCAG
131 AGAGCTCATTCCCCAG
* *
27203899 CCGGACCGAGGGCTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGAC-CGAGTCGATCCCCGGC
1 CCGGACCGAGGGCTGTGGCAGCAGGACCGGCAGCACGCAG-GGGGGACTCG-GCCGAT-CCCGGC
* * * * * *
27203963 TTGCGCATTATGCCTCAT-TGGCTGGCTCAACGCCCGCACGCTCGTTTCGTGGGTTGACTTATGC
63 TTGCGCATTATGCCTC-TCCGACCGGCTCAACGCCCGCACGCCCATTTCGTGGGTTGACTTAGGC
* * *
27204027 ATATAGAGTTCATTCCC
127 AAAGAGAGCTCATTCCC
27204044 AGTCTAAGAT
Statistics
Matches: 119, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
146 37 0.31
147 12 0.10
148 69 0.58
149 1 0.01
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.20
Consensus pattern (146 bp):
CCGGACCGAGGGCTGTGGCAGCAGGACCGGCAGCACGCAGGGGGGACTCGGCCGATCCCGGCTTG
CGCATTATGCCTCTCCGACCGGCTCAACGCCCGCACGCCCATTTCGTGGGTTGACTTAGGCAAAG
AGAGCTCATTCCCCAG
Found at i:27206009 original size:26 final size:26
Alignment explanation
Indices: 27205979--27206031 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27205969 GTTGACTTAG
27205979 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
27206005 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27206031 G
1 G
27206032 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27206325 original size:158 final size:158
Alignment explanation
Indices: 27206016--27206347 Score: 339
Period size: 158 Copynumber: 2.1 Consensus size: 158
27206006 CATATGGAGT
** * ** * *
27206016 TCATTCCCAGTCTAAGATCGAACCGGACCGAGTGTTGCGGCAGCAGGATCGGCAGCACGCAAGGG
1 TCATTCCCAGTCTAAGCCCCAGTCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAAGGG
* * * ** * * * *
27206081 GGACCGGGTCGGTCCCCGGTTTGTGACTTCTGCCTCTCCGGTCGACTGAGCACCCGCACGCCCAT
66 GGACCGAGCCGATCCCCGACTTATGACTTATGCCTCTACGGTCGACTCAGCACCCGCACGCCCAT
* **
27206146 TTCATCGGTTTGCTTAGGCATAGGGAGC
131 TTCATCGGGTTGCTTAGGCATACAGAGC
* * *
27206174 TCATT-CCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAG-TGGATCGGTAGCACACAAAG
1 TCATTCCCA-GTCTAAGCCCCAGTCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACAC-AAG
* * * *
27206237 GGGGACCGAGCCGATCCCCGACTTATG-CATTATGCCTCTACGGTTGGCTCAGCGCCCGCACGCT
64 GGGGACCGAGCCGATCCCCGACTTATGAC-TTATGCCTCTACGGTCGACTCAGCACCCGCACGCC
* * *
27206301 CATTTCGT-GGGTTGACTTATGCATACAGAGT
128 CATTTCATCGGGTTG-CTTAGGCATACAGAGC
27206332 TCATTCCCAGTCTAAG
1 TCATTCCCAGTCTAAG
27206348 AATGGACCAG
Statistics
Matches: 140, Mismatches: 29, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
157 22 0.16
158 115 0.82
159 3 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (158 bp):
TCATTCCCAGTCTAAGCCCCAGTCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAAGGG
GGACCGAGCCGATCCCCGACTTATGACTTATGCCTCTACGGTCGACTCAGCACCCGCACGCCCAT
TTCATCGGGTTGCTTAGGCATACAGAGC
Found at i:27206366 original size:158 final size:159
Alignment explanation
Indices: 27206218--27206506 Score: 364
Period size: 159 Copynumber: 1.8 Consensus size: 159
27206208 TTGTGGCAGT
* * *
27206218 GGATCGGTAGCACACAAAGGGGGACCGAGCCGATCCCCGACTTATGCATTATGCCTCTACGGTTG
1 GGATCGATAGCACACAAAGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTACGGTCG
* *
27206283 GCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAA
66 GCTCAGAGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAA
27206347 GAATGGACCAGACCAAGGGTTGCAACAGCA
130 GAATGGACCAGACCAAGGGTTGCAACAGCA
** ** * ** * * * * *
27206377 GGATCGATAGCACGGATGGGGGGACCGGGTTGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCG
1 GGATCGATAGCACACAAAGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTACGGTCG
* * * * *
27206442 GCTGAGATCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
66 GCTCAGAGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG
27206507 CATATGGAGC
Statistics
Matches: 107, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
158 3 0.03
159 104 0.97
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GGATCGATAGCACACAAAGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTCTACGGTCG
GCTCAGAGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG
AATGGACCAGACCAAGGGTTGCAACAGCA
Found at i:27208866 original size:26 final size:26
Alignment explanation
Indices: 27208836--27208888 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27208826 GTTGGCTCAG
*
27208836 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGCTCATTCCCA-GTCTAA
*
27208862 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
27208888 G
1 G
27208889 ATTTTGAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:27211144 original size:26 final size:26
Alignment explanation
Indices: 27211115--27211167 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27211105 GTTGACTTAG
* *
27211115 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
27211141 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
27211167 G
1 G
27211168 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:27211472 original size:159 final size:157
Alignment explanation
Indices: 27211181--27211472 Score: 354
Period size: 159 Copynumber: 1.8 Consensus size: 157
27211171 AGACTAGACC
* * ** *
27211181 GAGGGTTGTGACAGTAGGATCGGTAGCACGCAGGGGGACCGGACAGATCCCCAGCTTGCGCATTC
1 GAGGGTTGTGACAGTAAGACCGACAGCACGCAGGGGGACCGGACAGATCCCCAGCTTGCGCATTA
* * * * *
27211246 TGCCTCTCTGGTCGACTGAGAACCCGCACACCCGTTTCGTGGGTTGGCTTAGGCACAGGGAGCTC
66 TGCCTCTCTGGCCGACTCAGAACCCGCACACCCGTTTCGTGGGTTGACTTAGGCACACGAAGCTC
27211311 ATTCCATGTTTAGGCCCCTACCGGACT
131 ATTCCATGTTTAGGCCCCTACCGGACT
* * *
27211338 GAGGGTTGTGGCAGTAAGACCGACAGCACGCAGAGGGGGACCAGG-CTGATCCCC-GACTTGTGC
1 GAGGGTTGTGACAGTAAGACCGACAGCACGC--AGGGGGACC-GGACAGATCCCCAG-CTTGCGC
* * * * * *
27211401 ATTATGCCTCTTTGGCCGGCTCAGCACCCGCACACTCGTTTCGTGGGTTGACTTATGCATACGAA
62 ATTATGCCTCTCTGGCCGACTCAGAACCCGCACACCCGTTTCGTGGGTTGACTTAGGCACACGAA
*
27211466 GTTCATT
127 GCTCATT
27211473 GCCAGCCTAA
Statistics
Matches: 111, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
157 26 0.23
158 1 0.01
159 82 0.74
160 2 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GAGGGTTGTGACAGTAAGACCGACAGCACGCAGGGGGACCGGACAGATCCCCAGCTTGCGCATTA
TGCCTCTCTGGCCGACTCAGAACCCGCACACCCGTTTCGTGGGTTGACTTAGGCACACGAAGCTC
ATTCCATGTTTAGGCCCCTACCGGACT
Found at i:27212500 original size:26 final size:26
Alignment explanation
Indices: 27212464--27212516 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27212454 GTTGACTTAG
27212464 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27212490 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27212516 G
1 G
27212517 ATTGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27212862 original size:26 final size:26
Alignment explanation
Indices: 27212833--27212885 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27212823 GTTGACTTAG
*
27212833 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
27212859 GCATACGAAGTTCATTCCTAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
27212885 G
1 G
27212886 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:27214451 original size:26 final size:26
Alignment explanation
Indices: 27214415--27214467 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27214405 ACTTCGTGGG
*
27214415 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
27214441 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
27214467 G
1 G
27214468 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:27216036 original size:26 final size:26
Alignment explanation
Indices: 27216007--27216059 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27215997 GTTTACTTAG
27216007 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27216033 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27216059 G
1 G
27216060 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27216722 original size:26 final size:26
Alignment explanation
Indices: 27216692--27216744 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27216682 GTTGACTTAG
27216692 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
27216718 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
27216744 G
1 G
27216745 ATCAAACGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:27217015 original size:685 final size:681
Alignment explanation
Indices: 27215736--27217219 Score: 1778
Period size: 685 Copynumber: 2.2 Consensus size: 681
27215726 GGCTGCACAG
* ** *
27215736 AGGGGGGACTGGGTCGATCCTCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCACACG
1 AGGGGGGAC-GGGTCGAT-CTCGGCTTGCGCATTCT-GCTCTCCGGCCGGCTGAGCGCCGA-ACG
* ** *
27215801 CTTGTTTCGTGGGTTGGCTTAGGCATATAGAGTACATTCCATGTCCAAGCCCCAGCCGGACCAAG
62 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGACCAAG
* * *
27215866 GGTTGTGGCAGCAAGACCGACAGCGAGATCGGTAGCACGCAGATGGGGATCGGGCTAATCTTCAG
127 GGTTGTGGCAGCAAGACCGACAGCGAGATCGGCAGCACGCAGAGGGGGATAGGGCTAATCTTCAG
* * * * * * * * **
27215931 CTTGCGCATTATGCCTCTCCCACCGGCCTCTTCGGCCGGCTGATCGCCTGTACGCTCGTTTTGTG
192 CTTGCACATTATGCCTCTCCCACCGACCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATG
*
27215996 GGTTTACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
257 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
** * * * * ** * * * *
27216061 TCGGACTGGACCGGGGGTTGCGATAGCAGGATTGGTAGCACGCAGACAGGATCGGGCTGATCTCC
322 TCAAACGGGACCGAGGGCTGCGATAGCAGGATCGACAGCACGCAGACAGGACCGGACCGATCCCC
* * *
27216126 GGCTTACACATTCTGCCTCTCTGATAGGTTGAGTGCCCGCACACCCGTTTCATGGGTTAGCTTAG
387 GGCTTACACATTCAGCCTCTCAGATAGGTTGAGTACCCGCACACCCGTTTCATGGGTTAGCTTAG
* * *
27216191 GCATAGAGAGCTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGTAGTAGGACTAACA
452 GCATAGAGAGCTCATTCCATGTCTAAGCCCCAGCCAGACAGAGGGTTGTGGCAGCAGGACTAACA
* * * * * * *
27216256 GCACACAGAGGGGGACCGGGCTGATCCTCGACTTACACTTTATGCCTCTTCGATCGGCTCAGCAC
517 GCACACAGAAGGGGACAGGGCTGATCCCCGACTTACACATTATGCCACTTCGATCAGCTCAACAC
* * *
27216321 CCGCACGCTCGTTTCACGGGTTGACTTATGCATACGAAGTTCATTCCCAGTCTAAGATTGAACCA
582 CCACACGCTCGTTTCACGGGTTGACTTATGCATACGAAGTTCATTCCCAATCTAAGATCGAACCA
27216386 AACCGAA-GGTTGC-ATCAGCAAGATCGACACCA-CGT
647 AACC-AAGGGTTGCGA-CAGCAAGATCGACACCATC-T
* * *
27216421 AGGGGGGATCGGGTCGATCATCGACTTGCGCATTCTGCATCTCTGGCCGACTGAGCGCTCGAACG
1 AGGGGGGA-CGGGTCGATC-TCGGCTTGCGCATTCTGC-TCTCCGGCCGGCTGAGCGC-CGAACG
* * *
27216486 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGTCGGATCGAG
62 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGACCAAG
* ** * * * * *
27216551 GGTTGTGGCAGCAGGACCGGTAGCGGGATTGGCAGCACGTAGAGGGGGATAGGGCTGATCTTCGG
127 GGTTGTGGCAGCAAGACCGACAGCGAGATCGGCAGCACGCAGAGGGGGATAGGGCTAATCTTCAG
** * *
27216616 CTTGCACATTATGCCTCTCCGGCCGACCTCTCCGATCGGCTGAGCGCCCGCATGCTCATTTCATG
192 CTTGCACATTATGCCTCTCCCACCGACCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATG
*
27216681 GGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
257 GGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA
* * * **
27216746 TCAAACGGGACTGAGGGCTGCGGTAGCAGGATCGACAGCACGTAGAGGGGACCGGACCGATCCCC
322 TCAAACGGGACCGAGGGCTGCGATAGCAGGATCGACAGCACGCAGACAGGACCGGACCGATCCCC
* * * * *
27216811 GGCTTACGCGTTCAGCCTCTCCAG-TCGGTTGAGTACCCGCACGCCCGTTTCATGGGTTGGCTTA
387 GGCTTACACATTCAGCCTCT-CAGATAGGTTGAGTACCCGCACACCCGTTTCATGGGTTAGCTTA
* *
27216875 GGCATAG-GCAGCTCATTCCATGTCTAAGCCCCAGCCGGATCAG-GGGTTGTGGCAGCGGGA-TG
451 GGCATAGAG-AGCTCATTCCATGTCTAAGCCCCAGCCAGA-CAGAGGGTTGTGGCAGCAGGACT-
** * * * * * * *
27216937 GGCAGCACGCAGAAGGGGACAAGG-TCGATCCCCGACTTGCGCATTATGTCACTTTGGTCAGCTC
513 AACAGCACACAGAAGGGGACAGGGCT-GATCCCCGACTTACACATTATGCCACTTCGATCAGCTC
* ** *
27217001 AACGCCCACACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAATCTAAGATCG
577 AACACCCACACGCTCGTTTCACGGGTTGACTTATGCATACGAAGTTCATTCCCAATCTAAGATCG
* ** * * *
27217066 GACCGGACCAAGGGTTGCGACAGCAGGATTGACAGCATCT
642 AACCAAACCAAGGGTTGCGACAGCAAGATCGACACCATCT
* * * *
27217106 AGGGGGGACCGGGTCGATCTCTGGCTTGCGCATTTTGGCTCTCCAGCCGGTTGAGCGCCCGCACG
1 AGGGGGGA-CGGGTCGATCTC-GGCTTGCGCATTCT-GCTCTCCGGCCGGCTGAGCG-CCGAACG
* *
27217171 CTCGTTTCGTGCGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
62 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAG
27217220 TATATGAAGC
Statistics
Matches: 674, Mismatches: 110, Indels: 30
0.83 0.14 0.04
Matches are distributed among these distances:
684 9 0.01
685 653 0.97
686 12 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (681 bp):
AGGGGGGACGGGTCGATCTCGGCTTGCGCATTCTGCTCTCCGGCCGGCTGAGCGCCGAACGCTCG
TTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTT
GTGGCAGCAAGACCGACAGCGAGATCGGCAGCACGCAGAGGGGGATAGGGCTAATCTTCAGCTTG
CACATTATGCCTCTCCCACCGACCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTT
GACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAA
ACGGGACCGAGGGCTGCGATAGCAGGATCGACAGCACGCAGACAGGACCGGACCGATCCCCGGCT
TACACATTCAGCCTCTCAGATAGGTTGAGTACCCGCACACCCGTTTCATGGGTTAGCTTAGGCAT
AGAGAGCTCATTCCATGTCTAAGCCCCAGCCAGACAGAGGGTTGTGGCAGCAGGACTAACAGCAC
ACAGAAGGGGACAGGGCTGATCCCCGACTTACACATTATGCCACTTCGATCAGCTCAACACCCAC
ACGCTCGTTTCACGGGTTGACTTATGCATACGAAGTTCATTCCCAATCTAAGATCGAACCAAACC
AAGGGTTGCGACAGCAAGATCGACACCATCT
Found at i:27220687 original size:21 final size:21
Alignment explanation
Indices: 27220663--27220714 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
27220653 AGGATGGCGT
*
27220663 GTATCTTGCCTTCATCCATGC
1 GTATCCTGCCTTCATCCATGC
27220684 GTATCCTGCCTTCATCCATGC
1 GTATCCTGCCTTCATCCATGC
27220705 GTATCCTGCC
1 GTATCCTGCC
27220715 ACCTCCCACT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.13, C:0.37, G:0.15, T:0.35
Consensus pattern (21 bp):
GTATCCTGCCTTCATCCATGC
Found at i:27220898 original size:26 final size:26
Alignment explanation
Indices: 27220868--27220920 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27220858 GTTGACTTAG
*
27220868 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
27220894 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27220920 G
1 G
27220921 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27221266 original size:26 final size:26
Alignment explanation
Indices: 27221236--27221288 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27221226 GTTGACTTAG
*
27221236 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
*
27221262 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
27221288 G
1 G
27221289 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:27221597 original size:184 final size:183
Alignment explanation
Indices: 27221192--27221631 Score: 474
Period size: 184 Copynumber: 2.4 Consensus size: 183
27221182 CCGGCCTCTT
* *
27221192 CGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAG
1 CGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCAT-CCCAG
* * *
27221257 TCTAAGCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGACAGAGGGTTACGACAGCAAGAT
65 TCTAAGCATAAGAAGTTCATTCCCAATCTAAGATCAGACCGGACAGAGGGTTACGACAACAAGAT
* * * * * *
27221322 CGACAGTACGCAGGGGGGATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTC
130 CGACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTACATCTC
* * * * * * *
27221376 C-AGTCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTAACTTAGGCATATGGAGTTCATCCGCA
1 CGA-CCGACTGAGCACCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCC-CA
* * * * *
27221440 GTCTAAGCATAAGGAGTTCATTCCTAGTTTAAGATCAGACCGGATC-GAGGGTTAC-AGCAACAG
64 GTCTAAGCATAAGAAGTTCATTCCCAATCTAAGATCAGACCGGA-CAGAGGGTTACGA-CAACAA
* * * *
27221503 GATC-AGTAGCACGTATGGGGGACCGAGCCGATCCCCGGCTTGTGCATTTTACATCTC
127 GATCGA-CAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTACATCTC
* * * ** * * *
27221560 CGACCGATTGAGCACCCACACGTTCATTTTGTGGGTTAGCTTAGGCATACGGAGTACATTCCATG
1 CGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCA-G
27221625 TCTAAGC
65 TCTAAGC
27221632 CCTAGTCGGA
Statistics
Matches: 207, Mismatches: 42, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
183 7 0.03
184 198 0.96
185 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (183 bp):
CGACCGACTGAGCACCCGCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCAGT
CTAAGCATAAGAAGTTCATTCCCAATCTAAGATCAGACCGGACAGAGGGTTACGACAACAAGATC
GACAGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGTGCATTCTACATCTC
Found at i:27221741 original size:552 final size:551
Alignment explanation
Indices: 27220830--27221986 Score: 1403
Period size: 552 Copynumber: 2.1 Consensus size: 551
27220820 CAAGTGGTCA
* *
27220830 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAGCGCCCGCATGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
** * * *
27220895 CATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTACTGTAGCAGCATCAGTAG
66 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACAGCAACAGCATCAGTAG
* * * * * *
27220960 CACGCAGGGGGGATCGGGCTGATCCCCAGCTTGCACATTCTGTCTCCTTGGCCGATTGAGCGCCC
131 CACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCACATTCTATCTCC-TGACCGATTGAGCACCC
* * *
27221025 GCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACAATCCATGTCTAAACCCAGTCGAAC
195 ACACACTCATTTCGTGGGTTAGCTTAGGCATACGGAGTACAATCCATGTCTAAACCCAGTCGAAC
* ** * *
27221090 CGAAAGTTGTGGCAGCAGGACCGGTAACAGGATCAGCAGCATGTAAAAGGGGCACTGAGCTGATC
260 CGAAAGTTGTAGCAGCAGGACCGACAACAGGATCAGCAACACGTAAAAGGGGCACTGAGCTGATC
* * *
27221155 CCTGGCTTGCGCATTATGCCCCTCCGACCGGCCTCTTCGACCGACTGAGCACCCGCACGCTCATT
325 CCTGACTTACGCATTATGCCCCTCCGACCGGCCTCTCCGACCGACTGAGCACCCGCACGCTCATT
27221220 TCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATC
390 TCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATC
* *
27221285 TAAGATCAGA-TCGGACAGAGGGTTACGACAGCAAGATCGACAGTACGCAGGGGGGATCGGGCCG
455 TAAGATCAGACT-GGACAGAGGGTTACGACAGCAAGATCGACAGCACGCAGGAGGGATCGGGCCG
* * * **
27221349 ATCCTCGGCTTGTGCATTCTGCCTCTCCAGTCG
519 ATCCCCAGCCTACGCATTCTGCCTCTCCAGTCG
* * *
27221382 GCTGAGCGCCCGCATGCCCGTTTCATGGGTTAACTTAGGCATATGGAGTTCATCCGCAGTCTAAG
1 GCTGAGCGCCCGCATGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
* * *
27221447 CATA-AGGAGTTCATTCCTAGTTTAAGATCAGACCGGATCGAGGGTTACAGCAACAGGATCAGTA
66 CATACA-GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACAGCAACAGCATCAGTA
* * * ** *
27221511 GCACGTATGGGGGACCGAGCCGATCCCCGGCTTGTGCATTTTACATCTCC-GACCGATTGAGCAC
130 GCACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCACATTCT--ATCTCCTGACCGATTGAGCAC
** * * *
27221575 CCACACGTTCATTTTGTGGGTTAGCTTAGGCATACGGAGTACATTCCATGTCTAAGCCCTAGTCG
193 CCACACACTCATTTCGTGGGTTAGCTTAGGCATACGGAGTACAATCCATGTCTAAACCC-AGTCG
* * ** * * * * * *
27221640 GATCGAGGGTTGTAGCAGCAGGACCGACAGCGGGATC-GACAACACG-CAGAGGGGGA-TCGGGC
257 AACCGAAAGTTGTAGCAGCAGGACCGACAACAGGATCAG-CAACACGTAAAAGGGGCACT-GAGC
* * * * *
27221702 TGAT-CCTCGACTTATGCATTATGCCTCTCCGATCGGCCTCTCCGACCGGCTGAGCGCCCGCACG
320 TGATCCCT-GACTTACGCATTATGCCCCTCCGACCGGCCTCTCCGACCGACTGAGCACCCGCACG
** * ** * *
27221766 CTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGTGTATGGAGTTCATTC
384 CTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTC
* * * * * * * *
27221831 CCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGTATGATCGACAGCGCGCAGGAGGGATTG
449 CCAATCTAAGATCAGACTGGACAGAGGGTTACGACAGCAAGATCGACAGCACGCAGGAGGGATCG
* **
27221896 GGTCGATCCCCAGCCTACGCATTCTGCCTCTCTGGTCG
514 GGCCGATCCCCAGCCTACGCATTCTGCCTCTCCAGTCG
* * * *
27221934 GCTGAGCTG-CCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCAT
1 GCTGAGC-GCCCGCATGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
27221987 TCCATTTCTA
Statistics
Matches: 510, Mismatches: 86, Indels: 18
0.83 0.14 0.03
Matches are distributed among these distances:
551 5 0.01
552 460 0.90
553 40 0.08
554 5 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (551 bp):
GCTGAGCGCCCGCATGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACAGCAACAGCATCAGTAG
CACGCAGGGGGGACCGAGCCGATCCCCAGCTTGCACATTCTATCTCCTGACCGATTGAGCACCCA
CACACTCATTTCGTGGGTTAGCTTAGGCATACGGAGTACAATCCATGTCTAAACCCAGTCGAACC
GAAAGTTGTAGCAGCAGGACCGACAACAGGATCAGCAACACGTAAAAGGGGCACTGAGCTGATCC
CTGACTTACGCATTATGCCCCTCCGACCGGCCTCTCCGACCGACTGAGCACCCGCACGCTCATTT
CATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAATCT
AAGATCAGACTGGACAGAGGGTTACGACAGCAAGATCGACAGCACGCAGGAGGGATCGGGCCGAT
CCCCAGCCTACGCATTCTGCCTCTCCAGTCG
Found at i:27222271 original size:159 final size:157
Alignment explanation
Indices: 27221820--27222306 Score: 448
Period size: 159 Copynumber: 3.1 Consensus size: 157
27221810 CTAAGTGTAT
* * * *
27221820 GGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGTATGATCGACAGCGCGC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGACAGC-CAC
* * * * *
27221885 -AGGAGGGATTGGGTCGATCCCCAGCCTACGCATTCTGCCTCTCTGGTCGGCTGAGCTGCCGCAT
65 AAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGC-GCCGCAT
* *
27221949 GCCCGTTTCGTGGGTTGGCTTAGGCATAG
129 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * ** * * * * *
27221978 GGAGCTCATT-CCATTTCTAAG-GCCCACCTGGACTGAGGGTTGTGGTAGC-GGCACCGACAG-C
1 GGAGTTCATTCCCA-GTCTAAGATCAGACC-GGACCGAGGGTTGCGGCAGCAAG-ATCGACAGCC
** * * * * *
27222039 ACATAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCT-TCGG-CTAGCTCAGCGC
63 ACA-AG-GGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCT-GGTC-GGCTGAGCG-
* * ** *
27222102 CCGCACGCTCGTTTCATGGGTTAACTTATGCATAC
123 CCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * *
27222137 GGAGTTCATTCCCAGTCTCAGATCAGACCGGACCGAGTGTTGCGACCGCAAGATCGACAGCCCAC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGACAG-CCAC
* *
27222202 AAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGTTGAACGCCTGCAT
65 AAGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCC-GCAT
* *
27222267 GCTCGTTTTGTGAGTTGGCTTAGGCATAC
129 GCTCGTTTCGTGGGTTGGCTTAGGCATAC
27222296 GGAGTTCATTC
1 GGAGTTCATTC
27222307 GATGTCTAAG
Statistics
Matches: 250, Mismatches: 62, Indels: 33
0.72 0.18 0.10
Matches are distributed among these distances:
156 2 0.01
157 7 0.03
158 45 0.18
159 180 0.72
160 12 0.05
161 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (157 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGACAGCCACA
AGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAGCGCCGCATGC
TCGTTTCGTGGGTTGGCTTAGGCATAC
Found at i:27222339 original size:26 final size:26
Alignment explanation
Indices: 27222290--27222342 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27222280 GTTGGCTTAG
* *
27222290 GCATACGGAGTTCATTCGATGTCTAA
1 GCATACGGAGCTCATTCCATGTCTAA
27222316 GCATACGGAGCTCATTCCCA-GTCTAA
1 GCATACGGAGCTCATT-CCATGTCTAA
27222342 G
1 G
27222343 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATGTCTAA
Found at i:27223389 original size:26 final size:26
Alignment explanation
Indices: 27223353--27223405 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27223343 GTTGACTTAG
*
27223353 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
* *
27223379 GCATGCGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
27223405 G
1 G
27223406 ATAGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:27224067 original size:26 final size:26
Alignment explanation
Indices: 27224037--27224089 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27224027 GTTGACTTAG
*
27224037 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27224063 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27224089 G
1 G
27224090 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27224364 original size:159 final size:159
Alignment explanation
Indices: 27224196--27224565 Score: 372
Period size: 159 Copynumber: 2.3 Consensus size: 159
27224186 GAGCTCCTGC
* * *
27224196 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGAAGCTCATTCCATGTCTAAG-TCCCAACCGGAC
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGAT-CCAACCGAAC
* * ** * * * *
27224260 CGAGGGTTGTGGCAGTGGGA-CCGACAGCACGTAGAGG-GGGATCGGGCCGATCCTCGGCTTGCG
65 CAAGGGTTATGGCA-TCAGATCCGACAGCACGCA-AGGAGGGATCGAGCCGATCCCCGGCTTCCG
*
27224323 CATTATGTCACTTCGACCGGCTCAGCGCCCGT
128 CATTATGCCACTTCGACCGGCTCAGCGCCCGT
* * * * * ** *
27224355 ACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCGCA-ATCTAAGATCGGATCGAAC
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTC-CATGTCTAAGATCCAACCGAAC
* * * * *
27224419 CAAGGGTTATGGGATCAGATTCGATAGCATGCAAGGAGGGATCGAGTCGATCCCCGGCTTCCGCA
65 CAAGGGTTATGGCATCAGATCCGACAGCACGCAAGGAGGGATCGAGCCGATCCCCGGCTTCCGCA
* * * * *
27224484 TTCTGCCTCTTCGGCCGGTTGAGCGCCCGT
130 TTATGCCACTTCGACCGGCTCAGCGCCCGT
* *
27224514 ACGCTCGTTTCATGGGTTAGCTTAGGCATACGG-AGTTCATTCCATGTTTAAG
1 ACGCTCGTTTCATGGGTTGGCTTAGGCATA-GGAAGTTCATTCCATGTCTAAG
27224566 CATATGGAGC
Statistics
Matches: 168, Mismatches: 37, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
158 8 0.05
159 156 0.93
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
ACGCTCGTTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGATCCAACCGAACC
AAGGGTTATGGCATCAGATCCGACAGCACGCAAGGAGGGATCGAGCCGATCCCCGGCTTCCGCAT
TATGCCACTTCGACCGGCTCAGCGCCCGT
Found at i:27224394 original size:684 final size:685
Alignment explanation
Indices: 27222980--27224560 Score: 1661
Period size: 684 Copynumber: 2.3 Consensus size: 685
27222970 TCGGCTAAGA
* * * * *
27222980 ACCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATC-AGA
1 ACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATT-CCAGTCTAAGATCGAGA
* * * * **
27223044 CCAGATCGAGGGTTGTGACAGCAGGATCGACTGCAAGCAGGGGGGACCAGGCCGATCTTCGACTT
65 CCAAACCGAGGGTTGTCACAGCAGGATCGACAGCAAGCAGGGGGGACCAGGCCGATCCCCGACTT
** ** *
27223109 GTGCATTCTGCCTCTCCGATCGGTTGAGCGCCCACACACTCGTTTCGTGGGTTGGCTTAGGCATA
130 GCACATTCTGCCTCTCCGATCGACTGAGCGCCCACACACTCGTTTCGTGGGTCGGCTTAGGCATA
* * * *
27223174 CGGAGTACATTCCATGTTTAAACCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACCGATAGCGAG
195 CGGAGTACATTCCATGTCTAAACCCCAGTCGGACCGAGGATTGTGGAAGCAGGACCGACAGCGAG
* * * * **
27223239 ATCGGCAGCTCGCAGAGGGGGATCAAACTGGTCCCCGACTTGCACATTATGCCTCTCCGATCGGC
260 ATCGGCAGCTCGCAGAGAGGGATCAAACTGATCCCCGACTTGCACATAATGCCTCTCCGACCAAC
* *
27223304 CTCTTCGACCGACTGAGTGCCCGCACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATC
325 CTCTTCGACCGACTGAGCGCCCGCACGCTCGTTTCACGGGTTGACTTAGGCATACGGAGTTCATC
* * *
27223369 CCCAGTCTAAGCATGCGGAGTTCATTCCAAGTCTAAGATAGGACTGGATCGAGGATTACGATAGC
390 CCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATAGAACTGGATCGAGGACTACGATAGC
* * * **
27223434 AGGATTGGCAGCACACAGAGTGGATCGGGCCGATCCCCGGCTTGTGCATGCTGCCTCTCCAGCCG
455 AGGATCGGCAACACACAGAGGGGATCGGGCCGATCCCCGGCTTGTGCATGCAACCTCTCCAGCCG
* * *
27223499 ACTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGCTCATTCCATGTCTAAG
520 ACTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGAAGCTCATTCCATGTCTAAG
* * *
27223564 CCCCAGCCAGACCGAGGGTTATGGCAGCCAGACCGGCAGCACACAGAGGGGGATCGGGCTGATCC
585 CCCCAACCAGACCGAGGGTTATGGCAGCCAGACCGACAGCACACAGAGGGGGATCGGGCCGATCC
* ** *
27223629 TCAGCTTTCGCATTATACCTTTTCGGCCAGCTCAGC
650 TCAGCTTGCGCATTATACCACTTCGACCAGCTCAGC
* **
27223665 ACCCGCACACTCGTTTCACGGGTTGACTTATGCATAC-AGAGTTCATTCCTAGTCTAAGATCGA-
1 ACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGA-AGTTCATTCC-AGTCTAAGATCGAG
* * ** *
27223728 ACCAAACCGAGGGTTG-CATCAGCAGGATTGACAGCACGCA-GGGGGACTGGGTCGATCCCCGAC
64 ACCAAACCGAGGGTTGTCA-CAGCAGGATCGACAGCAAGCAGGGGGGACCAGGCCGATCCCCGAC
* *
27223791 TTGCACATTCTGCCTCTCCGATCGACTGAGTGCCCACACGCTCGTTTCGTGGGTCGGCTTAGGCA
128 TTGCACATTCTGCCTCTCCGATCGACTGAGCGCCCACACACTCGTTTCGTGGGTCGGCTTAGGCA
* * * * *
27223856 TATGGAGTACATTCCATGTCTAAGCCCCATTCGGACTGAGGATTGTGGCAAG-AGGACCGGCAGC
193 TACGGAGTACATTCCATGTCTAAACCCCAGTCGGACCGAGGATTGTGG-AAGCAGGACCGACAGC
* * * *** * * *
27223920 GGGATCGGTAGCAT-GTAGAGAGGGA-CTGGGCTGATCTCTGGCTTGCACATAATGCCTCTCCGA
257 GAGATCGGCAGC-TCGCAGAGAGGGATC-AAACTGATCCCCGACTTGCACATAATGCCTCTCCGA
* * ** **
27223983 CCAACCTTTTCGATCGGTTGAGCGCCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGT
320 CCAACCTCTTCGACCGACTGAGCGCCCGCACGCTCGTTTCACGGGTTGACTTAGGCATACGGAGT
* * * *
27224048 TCATCCCCAGTTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAA-TCGGA-CTGAAGG-CT
385 TCATCCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATAGAACT-GGATC-G-AGGACT
* * *** * *
27224110 ACGGTAGCAGGATCGGTAACACGTA-AG-GGGGATCGGTTTGATCCCTGGCTTGTGCATTCAACC
447 ACGATAGCAGGATCGGCAACAC--ACAGAGGGGATCGGGCCGATCCCCGGCTTGTGCATGCAACC
* * *
27224173 TCTCC-GACC-AGTTGAGCT-CCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGAAGCTCA
510 TCTCCAG-CCGA-CTGAG-TGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGAAGCTCA
* * * *** **
27224235 TTCCATGTCTAAGTCCCAACCGGACCGAGGGTTGTGGCAGTGGGACCGACAGCACGTAGAGGGGG
572 TTCCATGTCTAAGCCCCAACCAGACCGAGGGTTATGGCAGCCAGACCGACAGCACACAGAGGGGG
* ** *
27224300 ATCGGGCCGATCCTCGGCTTGCGCATTATGTCACTTCGACCGGCTCAGC
637 ATCGGGCCGATCCTCAGCTTGCGCATTATACCACTTCGACCAGCTCAGC
* * *
27224349 GCCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCGCAATCTAAGATCG-GA
1 ACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTC-CAGTCTAAGATCGAGA
* * * * *** * * * * * * *
27224413 TCGAACCAAGGGTTATGGGATCA-GATTCGATAGCATGCAAGGAGGGATC-GAGTCGATCCCCGG
65 CCAAACCGAGGGTTGTCACAGCAGGA-TCGACAGCAAGC-AGGGGGGACCAG-GCCGATCCCCGA
* * * ** ** ** * * **
27224476 CTTCCGCATTCTGCCTCTTCGGCCGGTTGAGCGCCCGTACGCTCGTTTCATGGGTTAGCTTAGGC
127 CTTGCACATTCTGCCTCTCCGATCGACTGAGCGCCCACACACTCGTTTCGTGGGTCGGCTTAGGC
*
27224541 ATACGGAGTTCATTCCATGT
192 ATACGGAGTACATTCCATGT
27224561 TTAAGCATAT
Statistics
Matches: 735, Mismatches: 138, Indels: 45
0.80 0.15 0.05
Matches are distributed among these distances:
683 7 0.01
684 546 0.74
685 94 0.13
686 88 0.12
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (685 bp):
ACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAAGTTCATTCCAGTCTAAGATCGAGAC
CAAACCGAGGGTTGTCACAGCAGGATCGACAGCAAGCAGGGGGGACCAGGCCGATCCCCGACTTG
CACATTCTGCCTCTCCGATCGACTGAGCGCCCACACACTCGTTTCGTGGGTCGGCTTAGGCATAC
GGAGTACATTCCATGTCTAAACCCCAGTCGGACCGAGGATTGTGGAAGCAGGACCGACAGCGAGA
TCGGCAGCTCGCAGAGAGGGATCAAACTGATCCCCGACTTGCACATAATGCCTCTCCGACCAACC
TCTTCGACCGACTGAGCGCCCGCACGCTCGTTTCACGGGTTGACTTAGGCATACGGAGTTCATCC
CCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATAGAACTGGATCGAGGACTACGATAGCA
GGATCGGCAACACACAGAGGGGATCGGGCCGATCCCCGGCTTGTGCATGCAACCTCTCCAGCCGA
CTGAGTGCCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGAAGCTCATTCCATGTCTAAGC
CCCAACCAGACCGAGGGTTATGGCAGCCAGACCGACAGCACACAGAGGGGGATCGGGCCGATCCT
CAGCTTGCGCATTATACCACTTCGACCAGCTCAGC
Found at i:27225338 original size:15 final size:16
Alignment explanation
Indices: 27225315--27225347 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
27225305 CTGGATCGAT
*
27225315 GGTTGAGGC-ATTGGG
1 GGTTCAGGCGATTGGG
27225330 GGTTCAGGCGATTGGG
1 GGTTCAGGCGATTGGG
27225346 GG
1 GG
27225348 GGCCGGGTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.12, C:0.09, G:0.55, T:0.24
Consensus pattern (16 bp):
GGTTCAGGCGATTGGG
Found at i:27225529 original size:40 final size:40
Alignment explanation
Indices: 27225484--27225562 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
27225474 TGCTGCCAGT
27225484 AGCCATTAAAGTGTCTAAAATGGGGATACTTTTTTCAAAC
1 AGCCATTAAAGTGTCTAAAATGGGGATACTTTTTTCAAAC
27225524 AGCCATTAAAGTGTCTAAAATGGGGATACTTTTTTCAAA
1 AGCCATTAAAGTGTCTAAAATGGGGATACTTTTTTCAAA
27225563 GTGGCAGCGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (40 bp):
AGCCATTAAAGTGTCTAAAATGGGGATACTTTTTTCAAAC
Found at i:27225884 original size:26 final size:26
Alignment explanation
Indices: 27225834--27225886 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27225824 GTTGGCTTAG
* *
27225834 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
27225860 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
27225886 G
1 G
27225887 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:27226604 original size:26 final size:26
Alignment explanation
Indices: 27226568--27226620 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27226558 GTTGACTTAG
*
27226568 GCATATGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
*
27226594 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27226620 G
1 G
27226621 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27226965 original size:26 final size:26
Alignment explanation
Indices: 27226936--27226988 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27226926 GTTGACTTAG
27226936 GCATACGGAG-TTCATCCCCAGTCTAA
1 GCATACGG-GTTTCATCCCCAGTCTAA
*
27226962 GCATACGGGTTTCATTCCCAGTCTAA
1 GCATACGGGTTTCATCCCCAGTCTAA
27226988 G
1 G
27226989 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGGTTTCATCCCCAGTCTAA
Found at i:27227650 original size:26 final size:26
Alignment explanation
Indices: 27227620--27227672 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27227610 GTTGACTTAG
*
27227620 GCATATAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
27227646 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27227672 G
1 G
27227673 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27228199 original size:369 final size:366
Alignment explanation
Indices: 27227278--27228202 Score: 1149
Period size: 369 Copynumber: 2.5 Consensus size: 366
27227268 GTTGACTTAT
* ** * *
27227278 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAACAGACCTAGGGTTGCGACAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAATGGA-CTAGGGTTGCGGCAGCAGGATCGACA
* ** * * **
27227343 GCATGTAGGGGGGACCAGG-TCGATCCCTGGCTTGTGCATTCTGCCTCTCCGACTGGCTGAGCAA
65 GCATGCAGGGGGGACTGGGCT-GATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * *
27227407 CAGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCG
129 CCGCAC-TCCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCG
* * * *
27227472 GACCAAGGGTTATGGCAGCAGGACCGGTAGTGGGATTGGCAGCACGCAGAAGGAGATCGGGCTGA
193 GACCAAGGGTTATCGCAGCAGGACCGATAGCGGGATTGGCAGCACACAGAAGGAGATCGGGCTGA
* * * * *
27227537 TCCTCGACTTACGCATTATGCCTCTCTGACCGACCTCTTCGACTGACTGAGTGCCCGCACGCTCG
258 TCCCCGACTTACGCATTATGCCTCTCTGACCGACCTCTCCGACCGACTGAGCGCCCGCACGCTCA
* *
27227602 TTTCATGGGTTGACTTAGGCATATAGAGTTCATCCCTAGTCTAA
323 TTTCATGGGTTGACTTACGCATACAGAGTTCATCCCTAGTCTAA
* *
27227646 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAATGGA-CTAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
27227711 GCACGCAAGTGGGA-TCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCAGCTGAGCGC
65 GCATGCAGGGGGGACT-GGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* *
27227775 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTACATTCCACGTCTAAGCCCCAG-CT
129 CCGCACTC-CGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTC-
** * * * * *
27227839 GGACTGAGGGTTATCGCAGTAGGACCGATAGCGGTATTGGCAGCACACAGAGGGGGATCGGGGTT
192 GGACCAAGGGTTATCGCAGCAGGACCGATAGCGGGATTGGCAGCACACAGAAGGAGATC-GGGCT
* * * *
27227904 GATCCCCGGCTTACGCATTATGCCTCTCTGGCC-AGCCTCTCCGACCGACTGAGCGCCTGTACGC
256 GATCCCCGACTTACGCATTATGCCTCTCTGACCGA-CCTCTCCGACCGACTGAGCGCCCGCACGC
*
27227968 TCATTTCATGGGTTGACTTACGTATACAGAGTTCATCCCTAGTCTAA
320 TCATTTCATGGGTTGACTTACGCATACAGAGTTCATCCCTAGTCTAA
* * * *
27228015 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATTGGACTAAGGGTTGTGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAATGGACT-AGGGTTGCGGCAGCAGGATCGACA
* * * * *
27228080 GCATGCAGGGGGGACTGGGCTGATCCCCGGCTTACGCATTCTACCTCTTCGGCCGGCTGAGCGCC
65 GCATGCAGGGGGGACTGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCC
* * * **
27228145 CGCACATCCATTTCTTGGGTTGGCTTAGGCATAGGGAGCT-CATTCCTTGTCTAAGCCC
130 CGCAC-TCCGTTTCATGGGTTGGCTTAGGCATACGGAG-TACATTCCACGTCTAAGCCC
27228203 TAGGTAGACC
Statistics
Matches: 475, Mismatches: 72, Indels: 19
0.84 0.13 0.03
Matches are distributed among these distances:
367 1 0.00
368 213 0.45
369 258 0.54
370 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (366 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGAATGGACTAGGGTTGCGGCAGCAGGATCGACAG
CATGCAGGGGGGACTGGGCTGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GCACTCCGTTTCATGGGTTGGCTTAGGCATACGGAGTACATTCCACGTCTAAGCCCCAGTCGGAC
CAAGGGTTATCGCAGCAGGACCGATAGCGGGATTGGCAGCACACAGAAGGAGATCGGGCTGATCC
CCGACTTACGCATTATGCCTCTCTGACCGACCTCTCCGACCGACTGAGCGCCCGCACGCTCATTT
CATGGGTTGACTTACGCATACAGAGTTCATCCCTAGTCTAA
Found at i:27228377 original size:159 final size:158
Alignment explanation
Indices: 27228015--27228516 Score: 370
Period size: 158 Copynumber: 3.2 Consensus size: 158
27228005 CCTAGTCTAA
* * * * *
27228015 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATTGGACTAAGGGTTGTGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGACCGATA
* * ** * * * *
27228080 GCATGCAGGGGGGACTGGGCTGATCCCCGGCTTACGCATTCTACCTCTTCGGCCGGCTGAGCGCC
66 GCACGCAGGGGGGACCGAACTCATCCCCGGCTTACGCATTATACCTCTTCGGCCGACTCAGCGCC
* *
27228145 CGCACATCCATTTCTTGGGTTGGCTTAG
131 CGCACATCCATTTCGTGGGTTGGCTTAC
* * * ** * * * * *
27228173 GCATAGGGAGCTCATTCCTTGTCTAAGCCCTAG-GTAGACCGAGGGTTGTGGCAGCGGGACCGGT
1 GCATACGGAGTTCATTCCTAGTCTAAGATC-AGACTGGACTGAGGGTTGTGGCAGCAGGACCGAT
* * *
27228237 AGCACGTAGAGGGGGACCGAAC-CA-CTCCTGGACTTACGCATTATGCCTCTTCGGCCGACTCAG
65 AGCACGCAG-GGGGGACCGAACTCATC-CCCGG-CTTACGCATTATACCTCTTCGGCCGACTCAG
* * *
27228300 TGCCCGCAC-GCTCGTTTCGTGGGTTGGCTTAC
127 CGCCCGCACATC-CATTTCGTGGGTTGGCTTAC
* * * ** * *
27228332 GCCTACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTATGGCATAAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGACCGATA
* * * ** ** * * * ** * *
27228397 GCATGCAGGGTGGATCG-GGTCGATCCCCGGCTTGTGCGTTCTACCTCTCCGATCGACTAAGTGC
66 GCACGCAGGGGGGACCGAACTC-ATCCCCGGCTTACGCATTATACCTCTTCGGCCGACTCAGCGC
** * *
27228461 CCGC-CCGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACATC-CATTTCGTGGGTTGGCTTAC
*
27228490 GCATACAGAGTTCATTCC-ATGTCTAAG
1 GCATACGGAGTTCATTCCTA-GTCTAAG
27228517 CATACGGAGC
Statistics
Matches: 268, Mismatches: 65, Indels: 22
0.75 0.18 0.06
Matches are distributed among these distances:
157 3 0.01
158 145 0.54
159 119 0.44
160 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGACCGATA
GCACGCAGGGGGGACCGAACTCATCCCCGGCTTACGCATTATACCTCTTCGGCCGACTCAGCGCC
CGCACATCCATTTCGTGGGTTGGCTTAC
Found at i:27229241 original size:26 final size:26
Alignment explanation
Indices: 27229205--27229257 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27229195 GTTGACTTAG
*
27229205 GCATACGGAGT-TCATCCCCAGTCTAA
1 GCATACAGAGTAT-ATCCCCAGTCTAA
*
27229231 GCATACAGAGTATATTCCCAGTCTAA
1 GCATACAGAGTATATCCCCAGTCTAA
27229257 G
1 G
27229258 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTATATCCCCAGTCTAA
Found at i:27230899 original size:26 final size:26
Alignment explanation
Indices: 27230869--27230921 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27230859 GTTGTCTTAG
*
27230869 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACAGAGTTCACT-CCCAGTCTAA
*
27230895 GCATACAGAGTTCACTGCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
27230921 G
1 G
27230922 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:27231185 original size:159 final size:159
Alignment explanation
Indices: 27230955--27231555 Score: 617
Period size: 158 Copynumber: 3.8 Consensus size: 159
27230945 ACAGTAGGAT
* * * *
27230955 CGACAGCACATAG-GGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTTTCCGACCGGCTG
1 CGACAGCACACAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTTTCCGACCGACTG
* * *
27231019 AGCGCCCGCACGCCCGTTTCGTGGGTTGCCTTAGGCATAGGGAGCTCATTCCATGTCTAAGCCCC
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCCCC
* *
27231084 AGTCGGACCAAGGGTTGTGGCAGCGGGAC
131 AGTCGGACCGAGGGTTGTGGTAGCGGGAC
* * *
27231113 CGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTTTTCGACCGACTG
1 CGACAGCACACAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTTTCCGACCGACTG
* * * * * * * **
27231178 AGTGCCCGTACGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAAG-AT
66 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGCTCATT-CCATGTCTAAGCCC
* * * *
27231241 CAGATCGAACCGAGGGTTGCGATAGCAGG-C
130 CAG-TCGGACCGAGGGTTGTGGTAGCGGGAC
** ** * * * * **
27231271 TCGACAGCATGCAGA-GGGGACCGGACCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGGTT
1 -CGACAGCACACAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTTTCCGACCGACT
* *
27231335 GAGCGCCCGCATGTTCGTTTCGTGGGTTGGCTTAGGCATA-GGCAGCTCATTCCATGTCTAAGCC
65 GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG-AGCTCATTCCATGTCTAAGCC
* * * * * *
27231399 CCAGCCAGACTGA-GGTTGTGGTAGTGAGAT
129 CCAGTCGGACCGAGGGTTGTGGTAGCGGGAC
** * * * * *
27231429 CGGTAGCACACAGAGGGGGACCAGG-CTGATCCCC-AGCTTGTGCATTCTGCCTCTCTGGCCGAC
1 CGACAGCACACAGAGGGGGACCGGGTC-GATCCCCGA-CTTGCGCATTCTGCCTTTCCGACCGAC
* *
27231492 TGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
64 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGC
27231556 ATACGGAGCT
Statistics
Matches: 357, Mismatches: 74, Indels: 24
0.78 0.16 0.05
Matches are distributed among these distances:
157 25 0.07
158 198 0.55
159 131 0.37
160 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
CGACAGCACACAGAGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTTTCCGACCGACTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGCTCATTCCATGTCTAAGCCCC
AGTCGGACCGAGGGTTGTGGTAGCGGGAC
Found at i:27231578 original size:26 final size:26
Alignment explanation
Indices: 27231528--27231580 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27231518 GTTGGCTTAG
* *
27231528 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGCTCATTCCATATCTAA
27231554 GCATACGGAGCTCATTCCCA-ATCTAA
1 GCATACGGAGCTCATT-CCATATCTAA
27231580 G
1 G
27231581 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCATATCTAA
Found at i:27238559 original size:26 final size:26
Alignment explanation
Indices: 27238529--27238581 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27238519 GTTGACTTAG
27238529 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
27238555 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27238581 G
1 G
27238582 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27239563 original size:26 final size:26
Alignment explanation
Indices: 27239522--27239574 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27239512 CTGATTCTAT
*
27239522 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACCGGGAATGAACCCCGTATG
* *
27239548 CTTAGACCGGGGATGAACTCCGTATG
1 CTTAGACCGGGAATGAACCCCGTATG
27239574 C
1 C
27239575 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACCCCGTATG
Found at i:27239940 original size:26 final size:26
Alignment explanation
Indices: 27239902--27239954 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27239892 CCAATCTGAT
27239902 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27239928 CTTAGACAT-GGAATGAACTCCTTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27239954 C
1 C
27239955 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27240300 original size:159 final size:157
Alignment explanation
Indices: 27239927--27240427 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 157
27239917 AACTCCGTAT
*
27239927 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
** ** * ** * * *
27239992 CCGGGCGGAGAGGCAGAATGTGCAAGCCGAAGACGGCCCGATCCCCCCTGCGTGCTGTCGATTCT
66 CCGACCGGAGAGGCAGAATGCACAAGCTGGGGACGGCACGGTCCCCCCTGCGTGCTGTCGATCCT
* * * ** *
27240057 ACTGTCGTAATGCTCGGTCCAGTCTGA
131 GCTGCCGCAACCCTCGGTCCAGACTGA
* * * * * * * *
27240084 TCTTAGAC-TGGAATGAACTCCGC-ATGCCTTAGTCAACCCACGAAATGAGCATTCGGGCACTGA
1 GCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCA
* * * * * * *
27240147 GCCGACCGGAGAGGCATAATACACAAGCTGGGGATCGACTCGGTCCACCTCTGCGTGCTGCCGGT
65 GCCGACCGGAGAGGCAGAATGCACAAGCTGGGGA-CGGCACGGTCC-CCCCTGCGTGCTGTCGAT
* * *
27240212 CCCGCTGCCACAACCCTCGGTCCA-ACTGGG
128 CCTGCTGCCGCAACCCTCGGTCCAGACT-GA
*
27240242 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCACTCA
* * *
27240306 GCCAACCAGAGAGGCAGAATGCACAAGCTGGGGAACGGCACGGTCCCCCCTGCGTACTGTCGATC
65 GCCGACCGGAGAGGCAGAATGCACAAGCTGGGG-ACGGCACGGTCCCCCCTGCGTGCTGTCGATC
* * **
27240371 CTGCTGCCGCAACCTTCGGTCCGGTTTGA
129 CTGCTGCCGCAACCCTCGGTCCAGACTGA
* *
27240400 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCCTATGC
27240428 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 63, Indels: 19
0.77 0.18 0.05
Matches are distributed among these distances:
156 71 0.26
157 18 0.07
158 99 0.37
159 82 0.30
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CCGACCGGAGAGGCAGAATGCACAAGCTGGGGACGGCACGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCCAGACTGA
Found at i:27240430 original size:26 final size:26
Alignment explanation
Indices: 27240401--27240453 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27240391 CCGGTTTGAT
*
27240401 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27240427 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
27240453 C
1 C
27240454 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27240837 original size:26 final size:26
Alignment explanation
Indices: 27240799--27240851 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27240789 CCGATTCGAT
*
27240799 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27240825 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
27240851 C
1 C
27240852 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27241715 original size:26 final size:26
Alignment explanation
Indices: 27241678--27241728 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27241668 CGATCTGATC
*
27241678 TTAGACTGGGAATGTACTCCATATGT
1 TTAGACTGGGAATGAACTCCATATGT
27241704 TTAGACAT-GGAATGAACTCCATATG
1 TTAGAC-TGGGAATGAACTCCATATG
27241729 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:27242052 original size:879 final size:874
Alignment explanation
Indices: 27239214--27242223 Score: 3271
Period size: 879 Copynumber: 3.4 Consensus size: 874
27239204 TGCTTAGAAA
* * * * * * * * * *
27239214 TGGAATGAAATCCATATGCCTAAGCCAACCCATGCAATGAGCGTGCGGGCACTCAGCCG-GCTGG
1 TGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGCCGATC-GG
* * * * * * * * *
27239278 AGAGGCAGAAAGCGTAAGCCGAGGATAGGCCTGGTCCCCCTCTGCGTGTTATCGATCCCGCTGCC
65 AGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCC
* * * *
27239343 ACAACCCTCAAT-CGGCTAGGGCTTAGAAATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
130 ACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
* * * * * * * * *
27239407 AACGGGTGTGCGGGCGCTCAGTCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGATC
195 AACAGGCGTGCGGGCACTCAGCCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGGCTCGGTC
* * * * * * *
27239472 CCCCCTGCGTGCTGCCAATCCTACAGCCGCAACCCTCGGTCTGATTCT-ATCTTAGACTGGGAAT
260 CCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGA-TCTGATCTTAGACTGGGAAT
* * * * *
27239536 GAACCCCGTATGCTTAGACCGGGGATGAACTCCGTATGCCTAACTCAACCCACAAAACGAGCGTA
324 GAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTA
** ** * * * *
27239601 CGGGCGCTCAGTTGTTCGGAGAGGCCGACCGGAGAGGCATAATGCGTAAGCTGGGGATCAGCCCG
389 CGGGCGCTCAGCCGACCGGAGAGGCTGACCGAAGAGGCATAATACGTAAGCTGGGGATCAGCCCA
* * * * * * * * *
27239666 GTCCCTCTCTATGTGCTACAGATCTCGCTACCGGTCCTGCTACCATAACCCTTGGTTCGACTGAG
454 GTCCCCCTCTACGTGCTACCGATC-CACTGCCGGTCCTGCTACCACAACCCTCGGTCCGACTGGG
*
27239731 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC-CAGGAAACGAGCGTACGGGCGCTCA
518 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCACA--AAACGAGCGTACGGGCGCTCA
* * * ** * * * ** *
27239795 ACCGATCAAAGAGGCAGAATGCGCAAGTTGAGGATCGGCTTGGTCCCCCCTGCGTGCTGCCGATC
581 GCCGGTCAGAGAGGCAGAATGCGCAAG-TGAGGATCGGCCCGATCCGCCTTGTATGCTGTCGATC
* * * *
27239860 TTGTTACTGGTCCTGCTACCGCAACCCTCGATCCAATCTGATCTTAGACTGGGAATGAACTCCGT
645 CTGCTACTGGTCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGT
* * *
27239925 ATGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTC
710 ATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTC
* * ** *
27239990 AGCCGGGCGGAGAGGCAGAATGTGCAAGCCGAAGA-CGGCCCGATCCCCCCTGCGTGCTGTCGAT
774 AGCC-GTCGGAGAGGCAGAATGTGCAAGCTGGGGACCGGCCCGATCCCCCCTACGTGCTGTCGAT
* ** * *
27240054 TCTACTGTCGTAATGCTCGGTCCAGTCTGATCTTAGAC
838 CCTACTGTCGTAACCCTCAGTCTAGTCT-ATCTTAGAC
* * * * * *
27240092 TGGAATGAACTCCGCATGCCTTAGTCAACCCACGAAATGAGCATTCGGGCACTGAGCCGACCGGA
1 TGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGCCGATCGGA
* * * * * * *
27240157 GAGGCATAATACACAAGCTGGGGATCGACTCGGTCCACCTCTGCGTGCTGCCGGTCCCGCTGCCA
66 GAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCA
* * *
27240222 CAACCCTCGGTCCAACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAA
131 CAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
* ** * *
27240287 ACAGGCGTGCGGGCACTCAGCCAACCAGAGAGGCAGAATGCACAAGCTGGGGAACGGCACGGTCC
196 ACAGGCGTGCGGGCACTCAGCCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGGCTCGGTCC
* * * * * *
27240352 CCCCTGCGTACTGTCGATCCTGCTGCCGCAACCTTCGGTCCGGTTTGATCTTAGACTGGGAATGA
261 CCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGA
* * *
27240417 ACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAAACCATGAAAGGAGCGTACG
326 ACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACG
* * **
27240482 GGCACTCAGCCTACCGGAGAGGCCT-ACC-AGAGAGGCATAATACGTAAGCTGGGGATCAG-CTT
391 GGCGCTCAGCCGACCGGAGAGG-CTGACCGA-AGAGGCATAATACGTAAGCTGGGGATCAGCCCA
* * * * ** *
27240544 GATCCCCCTCTACGTGCTACCGATCCAGCTGTCGGTCCTACTGCCACACCCCTCGGTCCGGTTAG
454 G-TCCCCCTCTACGTGCTACCGATCCA-CTGCCGGTCCTGCTACCACAACCCTCGGTCCGACTGG
* * * * *
27240609 GGCTTAGACATGGAATGAACT-TCGTATACCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCTT
517 GGCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAA-CCACAAAACGAGCGTACGGGCGCTC
* * * * *
27240673 AGCCGGTCGGAAAGGCAGAATACGCAAGTCGAAGATCGGTCCGATCCCTCCGATCTGCTGTCGAT
580 AGCCGGTCAGAGAGGCAGAATGCGCAAGT-GAGGATCGGCCCGA----TCCG--C--CT-T-G-T
* * * * * *
27240738 CCTGCTGTCGCAACCCTGCGTGCTACCGATCCTGCTGCCACAACCCTCAATCCGAT-TCGATCTT
633 -ATGCTGTCG--A---T-CCTGCTACTGGTCCTGCTGCCGCAACCCTCGATCCGATCT-GATCTT
* * *
27240802 AGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
690 AGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACG
* * ** *
27240867 AACCGAGCGTGCGGTGCTCAGCCTGTCGGAGAGGCAGAATACGCAAGCTGGGGACTGGCCCGATC
755 AAACGAGCGTGCGGCGCTCAGCC-GTCGGAGAGGCAGAATGTGCAAGCTGGGGACCGGCCCGATC
* * * * * * * * *
27240932 CTCCTTATGTGCTGTCGATCCTACTGTCGGAACCTTCATTCTGGTTCGATCTTAGAG
819 CCCCCTACGTGCTGTCGATCCTACTGTCGTAACCCTCAGTCTAG-TCTATCTTAGAC
* * * * ** *
27240989 TAGGAATGAAC-TCTGTATGCCTAGGTCAACCCATGAAACGAGCATTCAGGTGCTAAGCCGATCG
1 T-GGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGCCGATCG
* * * *
27241053 GAGAGGCATAATGCGCAAGCCGGGGATCAACCTGGTCCCCCTCTGTGTGCTGTCGATGCCGCTGC
64 GAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGC
27241118 CACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
129 CACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
** * * ** ** * * *
27241183 AAATGGGTGTACGGGTGCTCAGCCGGTCGGAGAGGTAGAATGCACAAGTC-GAGGATCGGCTCGG
194 AAACAGGCGTGCGGGCACTCAGCCGACCAGAGAGGCAGAATGCACAAGCCAG-GGATCGGCTCGG
* * * * * *
27241247 TCCCCCCTACGTGCTATCGATACTGCTGTCGTAACCCTTGATCCGATCTGATCTTAGATTGGGAA
258 TCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAA
* * *
27241312 TGAACTCTGTATGCTTAGACTAGGGATGAACTCCATATGCCTGAGTCAACCCACGAAACGAGCGT
323 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * **
27241377 ACGGGTGCTCAGCCGGCCAGAGAGGCTGGCCGAAGAGGCATAATACACAAGCTGGGGAT-AGCCC
388 ACGGGCGCTCAGCCGACCGGAGAGGCTGACCGAAGAGGCATAATACGTAAGCTGGGGATCAGCCC
* * * *
27241441 AGCCCCCCTCTGCGTTCTGCCGATTCCACTGCCGGTCCTGCTACCACAACCCTCGGTCCGACTGG
453 AGTCCCCCTCTACGTGCTACCGA-TCCACTGCCGGTCCTGCTACCACAACCCTCGGTCCGACTGG
* *
27241506 GGCTTAGACATGGAATGAACTCTGCATGCCTAAGCCAACCACAAAACGAGCGTACGGACGCTCAG
517 GGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCACAAAACGAGCGTACGGGCGCTCAG
* * *
27241571 CCGGTTAGAGAGGCAGAATGTGCAAGCTGGGGATCGGCCCGATCCGCCTTGTATGCTGTCGATCC
582 CCGGTCAGAGAGGCAGAATGCGCAAG-TGAGGATCGGCCCGATCCGCCTTGTATGCTGTCGATCC
* * * *
27241636 TGCTACTGGTCCTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGTACTCCATA
646 TGCTACTGGTCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTA
* * *
27241701 TGTTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTTA
711 TGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGCGCTCA
*
27241766 GCCGATCGGAGAGGCAGAATGTACAAGCTGGGGACCGGCCCGATCCCCCCTACGTGCTGTCGATC
775 GCCG-TCGGAGAGGCAGAATGTGCAAGCTGGGGACCGGCCCGATCCCCCCTACGTGCTGTCGATC
** **
27241831 CTGTTACCGTAACCCTCAGTCTAGTCCTATCTTAGAC
839 CTACTGTCGTAACCCTCAGTCTAGT-CTATCTTAGAC
* * *
27241868 TGGGAATGAACTTCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCACTGAGCCGATCGA
1 T-GGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGCCGATCGG
* * * *
27241933 AGAGGCATAATGCGCAAGCAGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCTACC
65 AGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCC
* * *
27241998 ATAACCCT-AGGTCCGGCTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
130 ACAACCCTCA-GTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
* * * * *
27242062 AAACAGGCGTGCAGGCACTTAGCCGACCGGAGAGGTAGAATTCGA-AAGCCAGGGATCGG-TCTG
194 AAACAGGCGTGCGGGCACTCAGCCGACCAGAGAGGCAGAATGC-ACAAGCCAGGGATCGGCTC-G
* * * *
27242125 GTCCCCCCTACATGCTGTCGATCCTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTAGGA
257 GTCCCCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGA
* * *
27242190 ATAAACTCCATTTGCTTAGACTGGGGATGAACTC
322 ATGAACTCCGTATGCTTAGACTGGGGATGAACTC
27242224 TGTATTCAGC
Statistics
Matches: 1755, Mismatches: 327, Indels: 99
0.80 0.15 0.05
Matches are distributed among these distances:
878 227 0.13
879 772 0.44
880 7 0.00
881 1 0.00
882 1 0.00
883 3 0.00
884 8 0.00
885 2 0.00
886 1 0.00
887 2 0.00
888 3 0.00
889 1 0.00
890 1 0.00
891 7 0.00
892 4 0.00
893 1 0.00
896 89 0.05
897 245 0.14
898 379 0.22
899 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (874 bp):
TGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGCCGATCGGA
GAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCA
CAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
ACAGGCGTGCGGGCACTCAGCCGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGGCTCGGTCC
CCCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGA
ACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACG
GGCGCTCAGCCGACCGGAGAGGCTGACCGAAGAGGCATAATACGTAAGCTGGGGATCAGCCCAGT
CCCCCTCTACGTGCTACCGATCCACTGCCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCT
TAGACATGGAATGAACTCTGTATGCCTAAGCCAACCACAAAACGAGCGTACGGGCGCTCAGCCGG
TCAGAGAGGCAGAATGCGCAAGTGAGGATCGGCCCGATCCGCCTTGTATGCTGTCGATCCTGCTA
CTGGTCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
AGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGCCGTC
GGAGAGGCAGAATGTGCAAGCTGGGGACCGGCCCGATCCCCCCTACGTGCTGTCGATCCTACTGT
CGTAACCCTCAGTCTAGTCTATCTTAGAC
Found at i:27242059 original size:159 final size:158
Alignment explanation
Indices: 27241708--27242148 Score: 471
Period size: 159 Copynumber: 2.8 Consensus size: 158
27241698 ATATGTTTAG
* *
27241708 ACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTTAGCCGATC
1 ACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTTAGCCGATC
** * * * * *
27241773 GGAGAGGCAGAATGTACAAGCTGGGGACCGGCCCGATCCCCCCTACGTGCTGTCGATCCTGTTAC
66 GGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCCGCTAC
* * *
27241838 CGTAACCCTCAGTCTAGTCCTATCTTAG
131 CATAACCCTCAGTCTAGTCCTAGCTTAC
* * ** * *
27241866 AC-TGGGAATGAACTTCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCACTGAGCCGAT
1 ACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTTAGCCGAT
* * * *
27241930 CGAAGAGGCATAATGCGCAAGCAGGGGATCGACCCGGTCCCCCTCTACGTGCTGTCGGTCCCGCT
65 CGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCC-CTACGTGCTGTCGATCCCGCT
* * *
27241995 ACCATAACCCT-AGGTC-CG-GCTGGGGCTTAC
129 ACCATAACCCTCA-GTCTAGTCCT--AGCTTAC
* * *
27242025 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCAGGCACTTAGCCGAC
1 ACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA-GCGTGCAGGCACTTAGCCGAT
* * * * * *
27242089 CGGAGAGGTAGAATTCGAAAGCCA-GGGATCGGTCTGGTCCCCCCTACATGCTGTCGATCC
65 CGGAGAGGCAGAATGCGCAAG-CAGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCC
27242149 TGCTGTCGCA
Statistics
Matches: 232, Mismatches: 43, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
157 3 0.01
158 107 0.46
159 119 0.51
160 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
ACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTTAGCCGATC
GGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCCGCTAC
CATAACCCTCAGTCTAGTCCTAGCTTAC
Found at i:27242807 original size:26 final size:26
Alignment explanation
Indices: 27242729--27242800 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
27242719 CCGATCCTAT
27242729 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
27242755 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
* * *
27242781 CTTAGATTGGGGTTGAACTC
1 CTTAGACTAGGGATGAACTC
27242801 TATATGCCTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
26 39 0.93
27 3 0.07
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Done.