Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 285 of 402
Found at i:27243378 original size:159 final size:159
Alignment explanation
Indices: 27243092--27243472 Score: 353
Period size: 159 Copynumber: 2.4 Consensus size: 159
27243082 CTGTCGTAAA
*
27243092 CCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA
1 CCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA
* * * * * *
27243157 GCATGCAGGCGCTTAACCGGTAAGAGAGGCAGAATGTGCAAGCCAGGGATCGACCCGGTCCCCTC
66 GCATACAGGCGCTGAACCGATAAGACAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCTC
27243222 CTGCATGTTGTCGATCCTACTGTCACAAC
131 CTGCATGTTGTCGATCCTACTGTCACAAC
* * * *
27243251 CCTCGGTCTGATCCAAT-TTCAGAC-AGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
1 CCTCGGTCCGATCCAATCTT-AGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC
** * ** * * * * *
27243314 GAGTGTACAGGCGCTGAACTGATCGGACAGGCATAATGCGCAAGTCGGGGATCTACCTGATCCCC
64 GAGCATACAGGCGCTGAACCGATAAGACAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCC
* * * **
27243379 -CTCTACGTGCTGTCGATCCCT-CTACCACAAAC
129 TC-CTGCATGTTGTCGAT-CCTACTGTCAC-AAC
* **** * *
27243411 CCTCGAT-CGA-CTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACTAAAC
1 CCTCGGTCCGATC-CAATCTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAAC
27243473 AGGAGTGTGG
Statistics
Matches: 178, Mismatches: 37, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
158 5 0.03
159 159 0.89
160 14 0.08
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.20
Consensus pattern (159 bp):
CCTCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA
GCATACAGGCGCTGAACCGATAAGACAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCTC
CTGCATGTTGTCGATCCTACTGTCACAAC
Found at i:27243639 original size:26 final size:26
Alignment explanation
Indices: 27243610--27243661 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27243600 CTGGTTCGAT
*
27243610 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
27243636 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27243662 TCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27244113 original size:158 final size:156
Alignment explanation
Indices: 27243636--27244135 Score: 458
Period size: 158 Copynumber: 3.2 Consensus size: 156
27243626 ACTTCGTATG
* * * *
27243636 CTTAGACATGGAATGAACTCCGTATGTCTAAGCCAACCTA-GAAAATGAGCGTATGGGCGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATG-AAATGAGCGTACGGGCGCTCAG
* * *
27243700 CCGATCAGAGAGGCAGAATGTGCAAGCCGGGGATCGACTC-AGTCCCT-CTGCGTGCTGTCGATC
65 CCGATCAGAGAGGCAGAATGCGCAAGTCGGGGATCG-CTCGA-TCCCTCCTGCGTGCTATCGATC
* * *
27243763 CTGCTGCCGCAACCCTCAATCCGATCTGAT
128 CTACTGCCGCAACCCTCGATCCGGT-TGAT
* * * * *
27243793 CTTAGAC-TGGGAATGAACTCCGTATGCCT-AGTCAACCCATGAAATGAGAGTTCGGGCACTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
* * * * * * * *
27243856 CCGATCGGAGAGGCATAATGCACAAGTCGAGGATCAGCCCGGATCCC-CTCTGAGTGCTACCAAT
65 CCGATCAGAGAGGCAGAATGCGCAAGTCGGGGATC-GCTC-GATCCCTC-CTGCGTGCTATCGAT
* * * * **
27243920 CCCACTGCCACAACCCTCGTTCCAGTTGGGG
127 CCTACTGCCGCAACCCTCGATCCGGTT-GAT
* * * * *
27243951 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGC
*
27244016 C-AGTCAGAGAGGTAGAATGCGCAAGTCGGGGATCTGCTCGATCCCTCCTGCGTGCTATCGATCC
66 CGA-TCAGAGAGGCAGAATGCGCAAGTCGGGGATC-GCTCGATCCCTCCTGCGTGCTATCGATCC
** * *
27244080 TACTATCGCAGCCCTCGATCCGGTTCATT
129 TACTGCCGCAACCCTCGATCCGGTTGA-T
* *
27244109 CTTAGA-TTGAGAATGAACTCTGTATGC
1 CTTAGACATG-GAATGAACTCCGTATGC
27244136 TTAGACTAGG
Statistics
Matches: 268, Mismatches: 61, Indels: 27
0.75 0.17 0.08
Matches are distributed among these distances:
156 56 0.21
157 35 0.13
158 118 0.44
159 59 0.22
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGC
CGATCAGAGAGGCAGAATGCGCAAGTCGGGGATCGCTCGATCCCTCCTGCGTGCTATCGATCCTA
CTGCCGCAACCCTCGATCCGGTTGAT
Found at i:27244356 original size:26 final size:26
Alignment explanation
Indices: 27244319--27244369 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
27244309 TGGTCCAATC
*
27244319 TTAGACTGGGAATGAACTTCGTATGT
1 TTAGACTGGGAATAAACTTCGTATGT
*
27244345 TTAGACAT-GGAATAAACTTTGTATG
1 TTAGAC-TGGGAATAAACTTCGTATG
27244370 CGTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTTCGTATGT
Found at i:27244797 original size:26 final size:26
Alignment explanation
Indices: 27244761--27244811 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
27244751 TTGGTCTAAT
* *
27244761 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
27244787 CTTAGACTGGGGATCAACTCCGTAT
1 CTTAGACTGGGAATCAACTCCGTAT
27244812 AGCCTAAGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:27245502 original size:25 final size:26
Alignment explanation
Indices: 27245474--27245525 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27245464 CCGATCTGAT
27245474 CTTAGACT-GGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
*
27245499 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
27245525 C
1 C
27245526 CTAAGCAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:27246141 original size:159 final size:157
Alignment explanation
Indices: 27245808--27246342 Score: 531
Period size: 159 Copynumber: 3.4 Consensus size: 157
27245798 TTGTTGATAG
* * * ** * *
27245808 TCCTGCTACCGCAACCCTCGATCCGATATGATCTTAGACTAGGAATGAACTACATATGCCTAAGC
1 TCCTGCTGCCACAACCCTCG-TCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
* ** *
27245873 CAACCCACGAAATGACCGTACGGGTGCTCAGTTGGCCAGAGAGGCAGAATGCGCAAGTCGGGGAC
65 CAACCCACGAAATGAGCGTACGGGTGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGAT
* * *
27245938 CAGCCCGATCCACCCCTGTGTGCTAT-TA
130 CGGCCCGATCC-CCCCTGTGTGCTGTCGA
* * ** *
27245966 CTCCTACTACTGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGTATGAACTCCGTATGCCTAAG
1 -TCCTGCTGCCACAACCCTC-GTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* * * * *
27246031 TCAACCCACGAAATGAGCGTCCAGGTGCTGAGCCGGCCAGAGAGGCATAATGCGCAAGTCGGGGA
64 CCAACCCACGAAATGAGCGTACGGGTGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGA
*
27246096 TCGGCCCGATCCCCCTCTGCGTGCTGTCGA
129 TCGGCCCGATCCCCC-CTGTGTGCTGTCGA
* * * ** *
27246126 TCCTGCTGCCACAACCCTTGGTCC-GACTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAA
1 TCCTGCTGCCACAACCC-TCGTCCGGTC-CGATCTTAGACTA-GGAATGAACTCCGTATGCCTAA
** * ** * * * * *
27246189 GCCAACCCATAAAATGGGCGTGTGGGTGCTCAACCAGTC-GAAGAGGTAGAATGCGCAAGCCGGG
63 GCCAACCCACGAAATGAGCGTACGGGTGCTCAGCCGGCCAG-AGAGGCAGAATGCGCAAGTCGGG
*
27246253 GATCGACCCGATCCCCCC-GATGTGCTGTCGA
127 GATCGGCCCGATCCCCCCTG-TGTGCTGTCGA
* * *
27246284 TCCTGCTGCCACAACCCTCGATCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGC
1 TCCTGCTGCCACAACCCTCG-TCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
27246343 TTAGACTGGG
Statistics
Matches: 308, Mismatches: 57, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 62 0.20
159 240 0.78
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (157 bp):
TCCTGCTGCCACAACCCTCGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
AACCCACGAAATGAGCGTACGGGTGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATC
GGCCCGATCCCCCCTGTGTGCTGTCGA
Found at i:27246345 original size:26 final size:26
Alignment explanation
Indices: 27246316--27246367 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27246306 CCGATCCGAT
*
27246316 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27246342 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27246368 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27247633 original size:26 final size:26
Alignment explanation
Indices: 27247597--27247649 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27247587 TCCAGTCGAT
*
27247597 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27247623 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
27247649 C
1 C
27247650 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27247984 original size:26 final size:26
Alignment explanation
Indices: 27247942--27247994 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27247932 CTGGTCTGAT
27247942 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
27247968 CTTAGAC-ATGGATTGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
27247994 C
1 C
27247995 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:27249506 original size:26 final size:26
Alignment explanation
Indices: 27249477--27249529 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27249467 CCAGTCTGAT
27249477 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCTGTATG
27249503 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
27249529 C
1 C
27249530 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATG
Found at i:27250387 original size:26 final size:26
Alignment explanation
Indices: 27250358--27250410 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27250348 CCGGTTCGAT
27250358 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
27250384 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
27250410 C
1 C
27250411 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:27250579 original size:26 final size:26
Alignment explanation
Indices: 27250550--27250628 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
27250540 CCGATTCGAT
*
27250550 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
27250576 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27250602 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27250628 C
1 C
27250629 CTAAGCCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 50 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27251765 original size:159 final size:158
Alignment explanation
Indices: 27251408--27251802 Score: 393
Period size: 158 Copynumber: 2.5 Consensus size: 158
27251398 AACTCTATAT
* * * *
27251408 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATTAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACCTCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * *
27251473 CCGGTTGGAGAGGCAAAATGCATAAACCGGGGACCGGCTCGATCCCCCTTACATGCTATCGATCC
66 CCGGTCGGAGAGGCAAAATGCACAAACCAGGGACCGGCCCGATCCCCCTTACATGCTATCGATCC
* * * *
27251538 AGCTACTACAACCTTCTGTCCGATCTGA
131 AGCTACCACAACCCTCAGTCCGAGCTGA
* * * *
27251566 TCTTAGAC-TGGGAATGAA-CTCTGTATGCCTAGGTCAACCCATGAAACGAGCGTGCGGGTGCTG
1 GCTTAGACAT-GGAATGAACCTCT-TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTC
* * * *** * * * * * *
27251629 AGCCAGTCGGAGAGGCATAATGCCCAAGTTAGGGATCGGCCCGATCCTCTTCTGCTTGCTGTC-A
64 AGCCGGTCGGAGAGGCAAAATGCACAAACCAGGGACCGGCCCGATCCCCCT-TACATGCTATCGA
* *
27251693 GTCCCGCTACCACAACCCTCAGTCCG-GCTAGG
128 -TCCAGCTACCACAACCCTCAGTCCGAGCT-GA
* * * * *
27251725 GCTTAGACATGGAATGAACCCCTTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACCTCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
*
27251790 CCGGCCGGAGAGG
66 CCGGTCGGAGAGG
27251803 TAGAATGCGC
Statistics
Matches: 189, Mismatches: 41, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.02
158 91 0.48
159 91 0.48
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACCTCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CCGGTCGGAGAGGCAAAATGCACAAACCAGGGACCGGCCCGATCCCCCTTACATGCTATCGATCC
AGCTACCACAACCCTCAGTCCGAGCTGA
Found at i:27251829 original size:159 final size:158
Alignment explanation
Indices: 27251408--27251846 Score: 418
Period size: 159 Copynumber: 2.8 Consensus size: 158
27251398 AACTCTATAT
* * * *
27251408 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATTAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACCTCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * *
27251473 CCGGTTGGAGAGGCAAAATGCATAAACCGGGGACCGGCTCGATCCCCCTTACATGCTATCGATCC
66 CCGGTCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCCCTTACATGCTATCGATCC
* * * *
27251538 AGCTACTACAACCTTCTGTCCGATCTGA
131 AGCTACCACAACCCTCAGTCCGAGCTGA
* * * *
27251566 TCTTAGAC-TGGGAATGAA-CTCTGTATGCCTAGGTCAACCCATGAAACGAGCGTGCGGGTGCTG
1 GCTTAGACAT-GGAATGAACCTCT-TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTC
* * * *** * * * * *
27251629 AGCCAGTCGGAGAGGCATAATGCCCAAGTTAGGGATCGGCCCGATCCTCTTCTGCTTGCTGTC-A
64 AGCCGGTCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCCCT-TACATGCTATCGA
* *
27251693 GTCCCGCTACCACAACCCTCAGTCCG-GCTAGG
128 -TCCAGCTACCACAACCCTCAGTCCGAGCT-GA
* * * * *
27251725 GCTTAGACATGGAATGAACCCCTTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACCTCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * * * * * *
27251790 CCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGCT
66 CCGGTCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCCCTTACATGCT
27251847 GCCGTTCCTA
Statistics
Matches: 220, Mismatches: 54, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 97 0.44
159 116 0.53
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACCTCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
CCGGTCGGAGAGGCAAAATGCACAAGCCGGGGATCGGCCCGATCCCCCTTACATGCTATCGATCC
AGCTACCACAACCCTCAGTCCGAGCTGA
Found at i:27251925 original size:26 final size:26
Alignment explanation
Indices: 27251885--27251936 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27251875 CGATCTAATG
*
27251885 TTAGACTGAGAATGAACTCTGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
* *
27251911 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
27251937 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:27252956 original size:197 final size:197
Alignment explanation
Indices: 27252606--27252965 Score: 512
Period size: 197 Copynumber: 1.8 Consensus size: 197
27252596 TGGCTCAAAC
*
27252606 TCTTAGACTGGGAATGAACTCCGTATGCTTAGGCATGGAATGAACTCTGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
* * * ** * *
27252671 CACAAAACGAGCGTGCGGGCGCTCAGCTGGCCGAAGAGGCAGAATGCGCAAGTTGGGGATTGGCC
66 AACAAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATACGCAAGCCGGGGATCGACC
*
27252736 CAGTCCCACTCTGTGTGCTGTCAATCCTACTGCTGGTCCTACTGCCACAACCCTTGGTCTGGTCC
131 CAGTCCCACTCTGTGTACTGTCAATCCTACTGCTGGTCCTACTGCCACAACCCTTGGTCTGGTCC
27252801 AA
196 AA
* *
27252803 TCTTAGATTGGGAATGAACTCCGTATTCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAAC
* *
27252867 CAACGAAATGAGCGTGCGGGCGCTCAGCCGGCC-AGAGAGGCAGAATACGCAAGCCGGGGATCGA
65 CAACAAAACGAGCGTGCGGGCGCTCAGCCGGCCGA-AGAGGCAGAATACGCAAGCCGGGGATCGA
** *
27252931 CCTGGTCCC-CTCT-TACGTACTGTCAATCCTGCTGC
129 CCCAGTCCCACTCTGT--GTACTGTCAATCCTACTGC
27252966 CACAACCCTT
Statistics
Matches: 143, Mismatches: 16, Indels: 8
0.86 0.10 0.05
Matches are distributed among these distances:
195 1 0.01
196 6 0.04
197 136 0.95
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (197 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
AACAAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGCAGAATACGCAAGCCGGGGATCGACC
CAGTCCCACTCTGTGTACTGTCAATCCTACTGCTGGTCCTACTGCCACAACCCTTGGTCTGGTCC
AA
Found at i:27253335 original size:26 final size:26
Alignment explanation
Indices: 27253299--27253351 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27253289 TCGGTCCCAT
*
27253299 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27253325 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27253351 C
1 C
27253352 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27253535 original size:171 final size:170
Alignment explanation
Indices: 27253324--27253692 Score: 449
Period size: 171 Copynumber: 2.2 Consensus size: 170
27253314 AACTCCTTAT
* *
27253324 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCATGCGGGCGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCGCTCAA
* * *
27253389 TC-GGCCGAAGAGGCATAATGTGCAAGCC-AGGGATCAGCCCGATCCC-CCTATGCGTGTTGTCG
66 -CAGGCCGAAGAGGCAGAATGCGCAAGCCGA-GGATCAGCCCGATCCCTCCTA--CGTGCTGTCG
* *
27253451 ATCCTGCTGCCGGTCCTGCTACCACAACCCTCGGTCTGACTGGG
127 ATCCTGCTGCCAGTCCTGCTACCACAACCCTCGATCTGACTGGG
**
27253495 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCGCTCA
* ** * *
27253559 ACAGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATTGGCTCGGTCCCTCCTACGTGCTGTCGATC
65 ACAGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCTCCTACGTGCTGTCGATC
* * * ** * *
27253624 CTGCTGCTAGTCCTGCTGCCGCAACCCTCGATCTGGTTTGA
130 CTGCTGCCAGTCCTGCTACCACAACCCTCGATCTGACTGGG
* * *
27253665 TCTTAGACTAGGAATGAACTTCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
27253693 TTAGACATGG
Statistics
Matches: 170, Mismatches: 23, Indels: 11
0.83 0.11 0.05
Matches are distributed among these distances:
169 1 0.01
170 69 0.41
171 94 0.55
172 6 0.04
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCGCTCAA
CAGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCTCCTACGTGCTGTCGATCC
TGCTGCCAGTCCTGCTACCACAACCCTCGATCTGACTGGG
Found at i:27254263 original size:26 final size:26
Alignment explanation
Indices: 27254225--27254277 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27254215 GGCTCAAAAT
*
27254225 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27254251 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27254277 C
1 C
27254278 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27254460 original size:26 final size:26
Alignment explanation
Indices: 27254421--27254473 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27254411 CTGGTCTGAT
27254421 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
27254447 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
27254473 C
1 C
27254474 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:27254999 original size:159 final size:159
Alignment explanation
Indices: 27254446--27255007 Score: 459
Period size: 159 Copynumber: 3.5 Consensus size: 159
27254436 AACTCCGTAT
* * * * ** * * *
27254446 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACAAAATGAACGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGTTCAG
** * * ** * * *
27254511 CCGATCGGAGAGGTAGAATGCGCAAGCTAGGGATCGGCTCGATCCCCC-CT-TATG-TGCTGTTG
66 CCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCCG--G
* ** * * * **
27254573 ATCCTGCTACCGCAACCCTCAGTCTGGTCT-AA
129 -TCCCGCCGCCACAACCCTCGGTCT-GACTGGG
* * ** * * * * * * * * *
27254605 TCTTAGA-TTGGGAATGAACTCTGTATGCCTAAGTCATCCCATGAAATGAGCATACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGTTCA
** * * * ** *
27254669 GCTAGTCGGAGAGGCATAATGCGCAAGCTGTGGATCGGCCCGATCCCCCTCTGTGTGCTGCCTGT
65 GCCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCCGGT
* * *
27254734 GCCGCCGCCCCAACCCTCGGTCTGGCTGGG
130 CCCGCCGCCACAACCCTCGGTCTGACTGGG
* *
27254764 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGTGCATGCGGGCGTTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGTTCAG
* * * * *
27254829 TCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCATGCTGTCGGTC
66 CCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCCGGTC
* *
27254894 CCGCTGCCATAACCCTCGGTCTGACTGGG
131 CCGCCGCCACAACCCTCGGTCTGACTGGG
* * * *
27254923 GCTTAGACATGGAATGAACTCCCTCTGGCTAAGCCAACCCATGAAACGGGCATGCGGGTGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGTTCAG
* *
27254988 CCGGCTGGAGAGGCAGAATG
66 CCGGCCGGAGAGGCATAATG
27255008 TGAAAGTCAG
Statistics
Matches: 323, Mismatches: 74, Indels: 12
0.79 0.18 0.03
Matches are distributed among these distances:
158 4 0.01
159 309 0.96
160 4 0.01
161 3 0.01
162 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGTTCAG
CCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCCGGTC
CCGCCGCCACAACCCTCGGTCTGACTGGG
Found at i:27255111 original size:26 final size:26
Alignment explanation
Indices: 27255082--27255134 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27255072 CCAGTGCGAT
*
27255082 CTTAGACCATGAATGAACTCCATATG
1 CTTAGACCAGGAATGAACTCCATATG
* * *
27255108 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCATATG
27255134 C
1 C
27255135 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCATATG
Found at i:27256136 original size:158 final size:158
Alignment explanation
Indices: 27255974--27256324 Score: 433
Period size: 157 Copynumber: 2.2 Consensus size: 158
27255964 TTATACTTGA
* * * * * *
27255974 AATGAACTCCAC-ATGCATAAGTCAACGCACGAAACGAGTGTACGGGC-GTTGAGCCGGTAGAAG
1 AATGAACTCC-CTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTT-AGCAGGCAGAAG
* * ** * * * *
27256037 AGGCATAATGCGCATGCCGGGGATCGGC-CTGTTCCCCCTCTGCGTGCTATCGGCCCCATTACCA
64 AGGCAGAATGCACAAACCGGGGATCGACGC-GGTCCCCCT-TGCGTGCTATCGACCCCACTACCA
27256101 CAACCCTCGGTCCGGCTGGGG-TTAGACATGG
127 CAACCCTCGGTCCGGCTGGGGCTTAGACATGG
* * * * *
27256132 AATGAACTCCCTATGCCTAATTCAACCCACG-AACGGGCGTGCGGGCACTTAGCAGGCCGGAGAG
1 AATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTTAGCAGGCAGAAGAG
* *
27256196 GCAGAATGCACAAACCGGGGATCGACGCGGTCTCCCTTGCGTGCTATCGATCCCACTACCACAAC
66 GCAGAATGCACAAACCGGGGATCGACGCGGTCCCCCTTGCGTGCTATCGACCCCACTACCACAAC
27256261 CCTCGGTCCGGCTGGGGCTTAGACATGG
131 CCTCGGTCCGGCTGGGGCTTAGACATGG
*
27256289 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACG
1 AATGAACTCCCTATGCCTAAGTCAACCCACGAAACG
27256325 GGCATGCGGG
Statistics
Matches: 165, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
156 42 0.25
157 90 0.55
158 33 0.20
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
AATGAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTTAGCAGGCAGAAGAG
GCAGAATGCACAAACCGGGGATCGACGCGGTCCCCCTTGCGTGCTATCGACCCCACTACCACAAC
CCTCGGTCCGGCTGGGGCTTAGACATGG
Found at i:27256388 original size:156 final size:155
Alignment explanation
Indices: 27256035--27256389 Score: 462
Period size: 157 Copynumber: 2.3 Consensus size: 155
27256025 AGCCGGTAGA
* * * * *
27256035 AGAGGCATAATGCGCATGCCGGGGATCGGCCTGTTCCCCCTCTGCGTGCTATCGGCCCCATTACC
1 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGT--CCCTCTGCGTGCTATCGACCCCACTACC
**
27256100 ACAACCCTCGGTCCGGCTGGGGTTAGACATGGAATGAACTCCCTATGCCTAATTCAACCCACGAA
64 ACAACCCTCGGTCCGGCTGGGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* *
27256165 CGGGCGTGCGGGCACTTAGCAGGCCGG
129 CGGGCATGCGGGCACTCAGCAGGCCGG
* * * *
27256192 AGAGGCAGAATGCACAAACCGGGGATCGACGC-GGTCTCC-CTTGCGTGCTATCGATCCCACTAC
1 AGAGGCAGAATGCGCAAGCCGGGGATCGGC-CTGGTC-CCTC-TGCGTGCTATCGACCCCACTAC
27256255 CACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
63 CACAACCCTCGGTCCGGCTGGGG-TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
** **
27256320 AAACGGGCATGCGGGTGCTCAGTTGGCCGG
127 -AACGGGCATGCGGGCACTCAGCAGGCCGG
* *
27256350 AGAGGCAGAATGCGCAAGCCGAGGATCGGCTTGGTCCCTC
1 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCTC
27256390 CTGCATACTG
Statistics
Matches: 169, Mismatches: 22, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
155 2 0.01
156 44 0.26
157 68 0.40
158 55 0.33
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (155 bp):
AGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCTCTGCGTGCTATCGACCCCACTACCAC
AACCCTCGGTCCGGCTGGGGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAACG
GGCATGCGGGCACTCAGCAGGCCGG
Found at i:27256404 original size:158 final size:157
Alignment explanation
Indices: 27255817--27256462 Score: 560
Period size: 158 Copynumber: 4.1 Consensus size: 157
27255807 TTAGATTGGG
* * * * * *
27255817 ATGAACTCCGTATGCCTAAGCCAACCTACAAAACAAGCGTGCGGGTGCTCAGTCGGCCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGG
* * * * * ** * **
27255882 CAAAATGCCCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTTGATCCTGCTGCTGCAACC
66 CAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCCACTACCACAACC
* * * * * *
27255947 CTCGGTCCAGTCTAATCTTATACTTGAA
131 CTCGGTCC-GGCTGAGCTTAGACATGGA
* * * * * * * ** *
27255975 ATGAACTCCAC-ATGCATAAGTCAACGCACGAAACGAGTGTACGGGCGTTGAGCCGGTAGAAGAG
1 ATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAG
* * * * ** *
27256039 GCATAATGCGCATGCCGGGGATCGGCCTGTTCCCCCTCTGCGTGCTATCGGCCCCATTACCACAA
65 GCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTATCGATCCCACTACCACAA
* *
27256104 CCCTCGGTCCGGCTGGGGTTAGACATGGA
129 CCCTCGGTCCGGCTGAGCTTAGACATGGA
** * * * *
27256133 ATGAACTCCCTATGCCTAATTCAACCCACG-AACGGGCGTGCGGGCACTTAGCAGGCCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGG
* * * * * *
27256197 CAGAATGCACAAACCGGGGATCGACGCGGTCTCCCTTGCGTGCTATCGATCCCACTACCACAACC
66 CAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCCACTACCACAACC
*
27256262 CTCGGTCCGGCTGGGGCTTAGACATGGA
131 CTCGGTCCGGCT-GAGCTTAGACATGGA
* * * **
27256290 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGTGCTCAGTTGGCCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGG
* ** * * * * ** **
27256355 CAGAATGCGCAAGCCGAGGATCGGCTTGGTCCCTCCTGCATACTGTCGATCCTGCTACCGTAACC
66 CAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCCACTACCACAACC
* *
27256420 TTCGGTCCGGTCTGATCTTAGAC-TAGGA
131 CTCGGTCCGG-CTGAGCTTAGACAT-GGA
*
27256448 ATGAACTCCGTATGC
1 ATGAACTCCCTATGC
27256463 TTAGATTGGG
Statistics
Matches: 387, Mismatches: 94, Indels: 14
0.78 0.19 0.03
Matches are distributed among these distances:
156 38 0.10
157 94 0.24
158 225 0.58
159 30 0.08
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGG
CAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCCACTACCACAACC
CTCGGTCCGGCTGAGCTTAGACATGGA
Found at i:27256465 original size:26 final size:26
Alignment explanation
Indices: 27256436--27256488 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27256426 CCGGTCTGAT
27256436 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
27256462 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27256488 C
1 C
27256489 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27257005 original size:159 final size:157
Alignment explanation
Indices: 27256610--27257018 Score: 403
Period size: 160 Copynumber: 2.6 Consensus size: 157
27256600 GATCTCACTG
* *
27256610 CCGGTCCTACTGCCACAA-CCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTTCGTATGCCT
1 CCGGTCCTACTGCCATAACCCTCGGTCCGGCT-GGGCTTAGACATGGAATGAACTTC-TATGCCT
* * *
27256674 AAGCCAACCCAGGAAATGAGCGTACGAGCGCTCAGCCGACCGGAGAGGCAAAATGCGCAAGCCGG
64 AAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGACCGGAGAGGCAAAATGCGCAAGCCGA
** **
27256739 GGATTGGCCCGATCCCCCCTGTGTGCTAT
129 CAATTGGCCCGATCCCCCCTACGTGCTAT
* * ** ** * * *
27256768 CCTGATCCTATTGCTGTAACCCTCGGTCCGGTCTGATCTTAGA-TTGGGAATGAATTTTGTATGC
1 CC-GGTCCTACTGCCATAACCCTCGGTCCGG-CTGGGCTTAGACAT-GGAATGAA-CTTCTATGC
* * * * * *
27256832 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCC-AGCCGGAGAGGTATAATGCGCAAGC
62 CTAAGCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGA-CCGGAGAGGCAAAATGCGCAAGC
*
27256896 CGACAATTGGCCCGGTCCCCCTCTACGTGCTA-
126 CGACAATTGGCCCGATCCCCC-CTACGTGCTAT
* * * * *
27256928 CCGGTCCCACTGCCATAACCCTCGATCTGGCTAGGGCTTTGACATGGAATGAACTCTCTATACCT
1 CCGGTCCTACTGCCATAACCCTCGGTCCGGCT-GGGCTTAGACATGGAATGAACT-TCTATGCCT
* * *
27256993 AAGCCAAACCACGAAATGGGCGTACG
64 AAGCCAACCCACGAAACGAGCGTACG
27257019 GGNNNNNNNN
Statistics
Matches: 197, Mismatches: 44, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
158 5 0.03
159 76 0.39
160 104 0.53
161 12 0.06
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CCGGTCCTACTGCCATAACCCTCGGTCCGGCTGGGCTTAGACATGGAATGAACTTCTATGCCTAA
GCCAACCCACGAAACGAGCGTACGAGCGCTCAGCCGACCGGAGAGGCAAAATGCGCAAGCCGACA
ATTGGCCCGATCCCCCCTACGTGCTAT
Found at i:27258089 original size:26 final size:26
Alignment explanation
Indices: 27258053--27258105 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27258043 TCGGTCCCAT
*
27258053 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27258079 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27258105 C
1 C
27258106 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27258903 original size:11 final size:11
Alignment explanation
Indices: 27258889--27258914 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
27258879 ACTCTCCGAT
27258889 GATGCTCCGGC
1 GATGCTCCGGC
27258900 GATGCTCCGGC
1 GATGCTCCGGC
27258911 GATG
1 GATG
27258915 GTGCCTTGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.12, C:0.31, G:0.38, T:0.19
Consensus pattern (11 bp):
GATGCTCCGGC
Found at i:27259022 original size:26 final size:26
Alignment explanation
Indices: 27258984--27259036 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27258974 GGCTCAAAAT
*
27258984 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27259010 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27259036 C
1 C
27259037 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27259219 original size:26 final size:26
Alignment explanation
Indices: 27259180--27259232 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27259170 CTGGTCTGAT
*
27259180 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
27259206 CTTAGACATG-GAATGAACTCCATATG
1 CTTAGAC-TGAGAATGAACTCCATATG
27259232 C
1 C
27259233 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:27259317 original size:196 final size:197
Alignment explanation
Indices: 27258982--27259341 Score: 519
Period size: 196 Copynumber: 1.8 Consensus size: 197
27258972 TTGGCTCAAA
* * *
27258982 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
** * ** *
27259047 CCATGAAATGACGGTACGGGCACTCAGTCGATCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGC
66 CCACAAAATGACGGTACGGGCACTCAGCCGATCGGAGAGGCAGAATGCACAAGTCAGGGATCGGC
*
27259112 CCAATCCCCCC-TGTGTGCTACTGATCCTACTACTAGTCCTGCTGCTGCAACCCTTGATCTGGTC
131 CCAATCCCCCCTTATGTGCTACTGATCCTACTACTAGTCCTGCTGCTGCAACCCTTGATCTGGTC
27259176 TG
196 TG
27259178 ATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
1 ATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* * * *
27259243 TCACAAAATGAAC-GTGCGGGCGCTCAGCCGATCGGAGAGGTAGAATGCACAAG-CTAGGGATCG
66 CCACAAAATG-ACGGTACGGGCACTCAGCCGATCGGAGAGGCAGAATGCACAAGTC-AGGGATCG
* * * *
27259306 GCTCGATCCCCCCTTATGTGCTATTGATCCTGCTAC
129 GCCCAATCCCCCCTTATGTGCTACTGATCCTACTAC
27259342 CGCAACCCTC
Statistics
Matches: 143, Mismatches: 18, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
195 1 0.01
196 121 0.85
197 21 0.15
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (197 bp):
ATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
CCACAAAATGACGGTACGGGCACTCAGCCGATCGGAGAGGCAGAATGCACAAGTCAGGGATCGGC
CCAATCCCCCCTTATGTGCTACTGATCCTACTACTAGTCCTGCTGCTGCAACCCTTGATCTGGTC
TG
Found at i:27259646 original size:159 final size:159
Alignment explanation
Indices: 27259436--27259727 Score: 404
Period size: 159 Copynumber: 1.8 Consensus size: 159
27259426 GAGCTAGTCG
* * ** * *
27259436 GAGAGGCATAATGCGCAAGCTGTGGATCGGCCCGATCCCCCTCTGTGTGCTGCCTGTGCCGCCGC
1 GAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCCGGTCCCGCCGC
* * * *
27259501 CCCAACCCTCGGTCCGGCTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
66 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACG
27259566 AAACATGCATGCGGGCGTTGAGTCGGCCA
131 AAACATGCATGCGGGCGTTGAGTCGGCCA
* * * *
27259595 GAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCATGCTGTCGGTCCCGCTGC
1 GAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCCGGTCCCGCCGC
* * * * * *
27259660 CATAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTCTGGCTAAACCAACCCATG
66 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACG
27259725 AAA
131 AAA
27259728 TGGGCATGCG
Statistics
Matches: 113, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
159 113 1.00
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.20
Consensus pattern (159 bp):
GAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCCGGTCCCGCCGC
CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACG
AAACATGCATGCGGGCGTTGAGTCGGCCA
Found at i:27259735 original size:159 final size:159
Alignment explanation
Indices: 27259436--27259766 Score: 401
Period size: 159 Copynumber: 2.1 Consensus size: 159
27259426 GAGCTAGTCG
* * ** * *
27259436 GAGAGGCATAATGCGCAAGCTGTGGATCGGCCCGATCCCCCTCTGTGTGCTGCCTGTGCCGCCGC
1 GAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCCGGTCCCGCCGC
* * * *
27259501 CCCAACCCTCGGTCCGGCTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
66 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACG
* * *
27259566 AAACATGCATGCGGGCGTTGAGTCGGCCA
131 AAACAGGCATGCGGGCGTTCAGCCGGCCA
* * * *
27259595 GAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCATGCTGTCGGTCCCGCTGC
1 GAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCCGGTCCCGCCGC
* * * * * *
27259660 CATAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTCTGGCTAAACCAACCCATG
66 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACG
** * **
27259725 AAATGGGCATGCGGGTGTTCAGCCGGCTG
131 AAACAGGCATGCGGGCGTTCAGCCGGCCA
*
27259754 GAGAGGCAGAATG
1 GAGAGGCATAATG
27259767 TGAAAGTCAG
Statistics
Matches: 143, Mismatches: 29, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
159 143 1.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (159 bp):
GAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGCCGGTCCCGCCGC
CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACG
AAACAGGCATGCGGGCGTTCAGCCGGCCA
Found at i:27259870 original size:26 final size:26
Alignment explanation
Indices: 27259841--27259893 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27259831 CCAGTGCGAT
*
27259841 CTTAGACCATGAATGAACTCCATATG
1 CTTAGACCAGGAATGAACTCCATATG
* * *
27259867 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCATATG
27259893 C
1 C
27259894 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCATATG
Found at i:27260898 original size:160 final size:162
Alignment explanation
Indices: 27260732--27261087 Score: 396
Period size: 160 Copynumber: 2.2 Consensus size: 162
27260722 TATTACTTGA
* * * *
27260732 AATGAACTCCAC-ATGCATAAGTCCAACGCACGAAACGAGTGTACGGGC-GTT-G-A-GCCGGTA
1 AATGAACTCC-CTATGCCTAAGTCCAACCCACGAAACGAGCGTACGGGCACTTAGCAGGCCGG-A
* * ** * * *
27260792 GAAGAGGCATTAATGCGCATGCCGGGGATCGGC-CTGTTCCCCCTCTGCGTGCGTATCGGCCCCA
64 G-AG-GGCA-GAATGCACAAACCGGGGATCGACGC-GGTCCCCCT-TGCGTGC-TATCGACCCCA
*
27260856 TTACCACAACCC-TCGGTCCGGCT-GGG-TTA-GACATGG
123 CTACCACAACCCTTCGGTCCGGCTGGGGCTTAGGACATGG
* * *
27260892 AATGAACTCCCTATGCCTAA-TTCAACCCACG-AACGGGCGTGCGGGCACTTAGCAGGCCGGAGA
1 AATGAACTCCCTATGCCTAAGTCCAACCCACGAAACGAGCGTACGGGCACTTAGCAGGCCGGAGA
* *
27260955 GGGCAGAATGCACAAACCGGGGATCGACGCGGTCTCCCTTGCGTGCTATCGATCCCACTACCACA
66 GGGCAGAATGCACAAACCGGGGATCGACGCGGTCCCCCTTGCGTGCTATCGACCCCACTACCACA
27261020 ACCCTTCGGTCCGGCTGGGGCTTAGGACATGG
131 ACCCTTCGGTCCGGCTGGGGCTTAGGACATGG
27261052 AATGAACTCCCTATGCCTAAG-CCAACCCACGAAACG
1 AATGAACTCCCTATGCCTAAGTCCAACCCACGAAACG
27261088 GGCATGCGGG
Statistics
Matches: 166, Mismatches: 18, Indels: 23
0.80 0.09 0.11
Matches are distributed among these distances:
156 20 0.12
157 18 0.11
158 40 0.24
159 20 0.12
160 56 0.34
161 7 0.04
162 5 0.03
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (162 bp):
AATGAACTCCCTATGCCTAAGTCCAACCCACGAAACGAGCGTACGGGCACTTAGCAGGCCGGAGA
GGGCAGAATGCACAAACCGGGGATCGACGCGGTCCCCCTTGCGTGCTATCGACCCCACTACCACA
ACCCTTCGGTCCGGCTGGGGCTTAGGACATGG
Found at i:27261169 original size:160 final size:158
Alignment explanation
Indices: 27260852--27261225 Score: 402
Period size: 160 Copynumber: 2.4 Consensus size: 158
27260842 GCGTATCGGC
* **
27260852 CCCATTACCACAACCC-TCGGTCCGGCTGGG-TTAGACATGGAATGAACTCCCTATGCCTAATTC
1 CCCACTACCACAACCCTTCGGTCCGGCTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * *
27260915 AACCCACGAACGGGCGTGCGGGCACTTAGCAGGCCGGAGAGGGCAGAATGCACAAACCGGGGATC
66 AACCCACGAACGGGCATGCGGGCACTCAGCAGGCCGGAGAGGGCAGAATGCACAAACCGAGGATC
* * *
27260980 GACGCGGTCTCCCTTGCGTGCTATCGAT
131 GACGCGGTCTCCCCTGCATACTATCGAT
27261008 CCCACTACCACAACCCTTCGGTCCGGCTGGGGCTTAGGACATGGAATGAACTCCCTATGCCTAAG
1 CCCACTACCACAACCCTTCGGTCCGGCT-GGGCTTA-GACATGGAATGAACTCCCTATGCCTAAG
** ** * *
27261073 CCAACCCACGAAACGGGCATGCGGGTGCTCAGTTGGCCGGAGA-GGCAGACATGCGC-AAGCGAG
64 CCAACCCACG-AACGGGCATGCGGGCACTCAGCAGGCCGGAGAGGGCAGA-ATGCACAAACCGAG
* ** *
27261136 GATCGGCTTGGTC-CCTCCTGCATACTGTCGAT
127 GATCGACGCGGTCTCC-CCTGCATACTATCGAT
** ** ** *
27261168 CCTGCTACCGTAA-CCTTCGGTCCGGTCTGATCTTAGAC-TAGGAATGAACTCCGTATGC
1 CCCACTACCACAACCCTTCGGTCCGG-CTGGGCTTAGACAT-GGAATGAACTCCCTATGC
27261226 TTAGATTGGG
Statistics
Matches: 183, Mismatches: 26, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
156 15 0.08
157 12 0.07
158 23 0.13
159 22 0.12
160 80 0.44
161 31 0.17
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (158 bp):
CCCACTACCACAACCCTTCGGTCCGGCTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
AACCCACGAACGGGCATGCGGGCACTCAGCAGGCCGGAGAGGGCAGAATGCACAAACCGAGGATC
GACGCGGTCTCCCCTGCATACTATCGAT
Found at i:27261228 original size:26 final size:26
Alignment explanation
Indices: 27261199--27261251 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27261189 CCGGTCTGAT
27261199 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
27261225 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27261251 C
1 C
27261252 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27261655 original size:160 final size:159
Alignment explanation
Indices: 27261417--27261911 Score: 520
Period size: 159 Copynumber: 3.1 Consensus size: 159
27261407 GCTTAGACAT
* * *
27261417 GGAATGAACT-TCGTATGCCTAAGCCAACCCAGGAAATGAGCGTACGAGCGCTCAGCC-GACCGG
1 GGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTGAGCCAG-CCGG
* *
27261480 AGAGGCAAAATGCGCAAGCCGGGGATTGGCCCGATCCCCCCTGTGTGCTATCCTGATCCTATTGC
64 AGAGGCAAAATGCGCAAGCCGGAGATTGGCCCGATCCCCCCTGCGTGCTATCC-GATCCTATTGC
27261545 TGTAACCCTCGGTCTGGTCTGATCTTAGATTG
128 TGTAACCCTCGGTCTGGTCTGATCTTAGATTG
* * * * *
27261577 GGAATGAATTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCAGCCGGAG
1 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTGAGCCAGCCGGAG
* * * * * * * * * *
27261642 AGGTATAATGCGCAAGCC-GACAATCGGCCCGGTCCCCCTCTACGTGCTA-CCGGTCCCACTGCC
66 AGGCAAAATGCGCAAGCCGGA-GATTGGCCCGATCCCCC-CTGCGTGCTATCCGATCCTATTGCT
* * ** *
27261705 ATAACCCTCGATCTGGT-TAGGGCTTAGACAT-
129 GTAACCCTCGGTCTGGTCT-GATCTTAGA-TTG
* * * * * * *
27261736 GGAATGAACTCTCTATACCTAAGCCAAACCATGAAATGGGCGTACGGGAGC-GCAGCCAGCCAGA
1 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTG-AGCCAGCCGGA
* * * * *
27261800 GAGGCAGAATACGCAAGCCGGAGATTGGCCCGATCCCCTCTGCGTGCTGT-CGATCCTGTTGCTG
65 GAGGCAAAATGCGCAAGCCGGAGATTGGCCCGATCCCCCCTGCGTGCTATCCGATCCTATTGCTG
*
27261864 CAACCCTCGGTCTGGTCTGATCTTAGATTG
130 TAACCCTCGGTCTGGTCTGATCTTAGATTG
27261894 GGAATGAACTCTGTATGC
1 GGAATGAACTCTGTATGC
27261912 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 58, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 55 0.21
159 111 0.42
160 89 0.33
161 10 0.04
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTGAGCCAGCCGGAG
AGGCAAAATGCGCAAGCCGGAGATTGGCCCGATCCCCCCTGCGTGCTATCCGATCCTATTGCTGT
AACCCTCGGTCTGGTCTGATCTTAGATTG
Found at i:27261914 original size:26 final size:26
Alignment explanation
Indices: 27261885--27261937 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27261875 CTGGTCTGAT
* *
27261885 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27261911 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27261937 C
1 C
27261938 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27262927 original size:24 final size:24
Alignment explanation
Indices: 27262900--27262949 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
27262890 GTTGTTCTAG
27262900 TGCCCGTACGCTTGTGTTTTAGGC
1 TGCCCGTACGCTTGTGTTTTAGGC
27262924 TGCCCGTACGCTTGTGTTTTAGGC
1 TGCCCGTACGCTTGTGTTTTAGGC
27262948 TG
1 TG
27262950 ACTTAGGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.08, C:0.24, G:0.30, T:0.38
Consensus pattern (24 bp):
TGCCCGTACGCTTGTGTTTTAGGC
Found at i:27268498 original size:26 final size:26
Alignment explanation
Indices: 27268461--27268511 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27268451 GCTCAAAATC
27268461 TTAGACTGGGAATGAACTCCATATGA
1 TTAGACTGGGAATGAACTCCATATGA
*
27268487 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCATATG
27268512 CCTAAGCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:27269256 original size:26 final size:26
Alignment explanation
Indices: 27269179--27269257 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
27269169 TCGATCTGAT
*
27269179 CTTAGAC-TAGGAATGAACTCCATATA
1 CTTAGACAT-GGAATGAACTCCATATG
*
27269205 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
*
27269231 CTTAGACATGGAATGAACTCTATATG
1 CTTAGACATGGAATGAACTCCATATG
27269257 C
1 C
27269258 CTAAGCCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:27269606 original size:158 final size:158
Alignment explanation
Indices: 27269230--27269659 Score: 392
Period size: 159 Copynumber: 2.7 Consensus size: 158
27269220 AACTCCGTAT
*
27269230 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
27269295 CCAATCGGAGAGGCAGAATACGTAAGTCAAGGATCAGCCCGATCCCCCTCTACGTGCTGTCGATC
66 CCAATCGAAGAGGCAGAATACGTAAGTCAAGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATC
* *
27269360 CTACTGCCGTAACCCTTGGTCCGATCTGA
131 C-ACTGCCGTAACCCTCGGTCCGAGCTGA
* * * * * * *
27269389 TCTTATAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * * ** ***
27269453 GCTGA-CTGAAGAGGCATAATGCGTAAGTCGGGGATCAGCCC-AGTCCCCCTCTGTTTGCTGCC-
65 GCCAATC-GAAGAGGCAGAATACGTAAGTCAAGGATCAGCCCGA-TCCCCCTCTACGTGCTGCCG
* *
27269515 AGTCC-C-GCTGTACAACCCTCGGTCCG-GCTGGG
128 A-TCCACTGCCGT--AACCCTCGGTCCGAGCT-GA
** * * *
27269547 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
27269612 TCAGTAAGAA-AGGCAGAATGCGCAAGCCAAGGATC-GACCTGATCCCCC
66 CCAAT-CGAAGAGGCAGAATACGTAAGTCAAGGATCAG-CCCGATCCCCC
27269660 CTGTGTGCTA
Statistics
Matches: 214, Mismatches: 45, Indels: 25
0.75 0.16 0.09
Matches are distributed among these distances:
156 4 0.02
157 4 0.02
158 97 0.45
159 109 0.51
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAATCGAAGAGGCAGAATACGTAAGTCAAGGATCAGCCCGATCCCCCTCTACGTGCTGCCGATC
CACTGCCGTAACCCTCGGTCCGAGCTGA
Found at i:27269746 original size:25 final size:25
Alignment explanation
Indices: 27269710--27269757 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
27269700 TCCGATCTTA
*
27269710 GACTGGGAATGAACTCCATATGCTT
1 GACTGGGAATGAACTCCACATGCTT
*
27269735 GACTGGGGATGAACTCCACATGC
1 GACTGGGAATGAACTCCACATGC
27269758 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (25 bp):
GACTGGGAATGAACTCCACATGCTT
Found at i:27270385 original size:323 final size:320
Alignment explanation
Indices: 27269743--27270471 Score: 824
Period size: 321 Copynumber: 2.3 Consensus size: 320
27269733 TTGACTGGGG
* * *
27269743 ATGAACTCCAC-ATGCCTAAGTCAACCCACGAAACGA-CA---GTACGGGCGGTCAGCCGACCAG
1 ATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCATGCGTACGGGCGCTCAACCGACCAG
* * * * * *
27269803 AGAGGTAGAATGTGCAAGCCGAGGATCGGCCTGGTCCCTCCTATGTGCTATCGATTTTACTGTCG
65 AGAGGCAGAATGTGCAAGCCGAGGATCGGCCTGGTCCCCCCTACGTACTATCAATTTTA-TGCCG
* * * *
27269868 TAACCCTCAGTCCGATCCGATCTTAGACTGTAAATGAACTCTGTATGCATAAGTCAACCCACGAA
129 CAACCCTCAGTCCGATCCGATCTTAGACTGGAAATAAACTCTGTATGCACAAGTCAACCCACGAA
* * * * * *
27269933 ATGAGTGTGCAGGCGCTTAGCCAGCCAAAGAGGCATAATGCGTAAGCCGGGGATCAGCCCAGTCC
194 ATGAGCGTGCAGGCGCTTAGACAGCAAAAAAGGAATAATGCGCAAGCCGGGGATCAGCCCAGTCC
* * ** *
27269998 CCCTCTGCGTGCTGTCGGTCCCGTTACCACAACCCTCATTCTGGTTGGGGCTTAGACATGGA
259 CCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCATTCCGACTAGGGCTTAGACATGGA
* * * *
27270060 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGTGCTGGCGCTCAACCGACCGGA
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGTACGGGCGCTCAACCGACCAGA
* *
27270125 GAGGCAGAAT-TCGCAAGCTGAGGATCGGCCTGGTCCCCCCTACGTACTGTCAATCCTTT-TGCC
66 GAGGCAGAATGT-GCAAGCCGAGGATCGGCCTGGTCCCCCCTACGTACTATCAAT--TTTATGCC
* *
27270188 GCAACCCTCAGTCTGATCCGATCTTAGACTGGAAATAAACT-TCGTATGCCCAAGTCAACCCACG
128 GCAACCCTCAGTCCGATCCGATCTTAGACTGGAAATAAACTCT-GTATGCACAAGTCAACCCACG
* * **
27270252 AAATGAGCGTGC-GGC-CATT-GAACAGATCAAAAAAAGGAATTATGTGCAAGCCGGGGATTGGC
192 AAATGAGCGTGCAGGCGC-TTAG-ACAG--C-AAAAAAGGAATAATGCGCAAGCCGGGGATCAGC
* * *
27270314 CCGGTCCCCCTCTGGGTGCTGTCGGTCCCGCTGCCACAACCCTCGA-TCCGACTAGGGCTTAGAC
252 CCAGTCCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTC-ATTCCGACTAGGGCTTAGAC
27270378 ATGGA
316 ATGGA
* * *
27270383 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCG---GGG-ACTCAACCGGCCAGA
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGTACGGGCGCTCAACCGACCAGA
* * * *
27270444 GAAGCAAAATGTACAAGCCGAGTATCGG
66 GAGGCAGAATGTGCAAGCCGAGGATCGG
27270472 TTCGGTCCCC
Statistics
Matches: 346, Mismatches: 50, Indels: 30
0.81 0.12 0.07
Matches are distributed among these distances:
316 1 0.00
317 32 0.09
318 2 0.01
319 35 0.10
320 13 0.04
321 133 0.38
322 1 0.00
323 128 0.37
324 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (320 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGTACGGGCGCTCAACCGACCAGA
GAGGCAGAATGTGCAAGCCGAGGATCGGCCTGGTCCCCCCTACGTACTATCAATTTTATGCCGCA
ACCCTCAGTCCGATCCGATCTTAGACTGGAAATAAACTCTGTATGCACAAGTCAACCCACGAAAT
GAGCGTGCAGGCGCTTAGACAGCAAAAAAGGAATAATGCGCAAGCCGGGGATCAGCCCAGTCCCC
CTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCATTCCGACTAGGGCTTAGACATGGA
Found at i:27270528 original size:323 final size:320
Alignment explanation
Indices: 27269743--27270554 Score: 794
Period size: 321 Copynumber: 2.5 Consensus size: 320
27269733 TTGACTGGGG
* * * *
27269743 ATGAACTCCAC-ATGCCTAAGTCAACCCACGAAACGA-CAGTACGGGCGG---TCAGCCGACCAG
1 ATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCA-TGCGTGCGGCACTCAACCGACCAG
* * * * * ** * * * ** * *
27269803 AGAGGTAGAATGT-GCAAGCCGAGGATCGGCCTGGTCCCTCCTATGTGCTATCGATTTTACTGTC
64 AGAAGCAAAAT-TCACAAGCCGAGGATCGGCCTGGTCCCCCCTACATACTGTCAATCCTGCTGCC
* * * * *
27269867 GTAACCCTCAGTCCGATCCGATCTTAGACTGTAAATGAACTCTGTATGCATAAGTCAACCCACGA
128 GCAACCCTCAGTCTGATCCGATCTTAGACTGGAAATAAACTCTGTATGCACAAGTCAACCCACGA
* * * * * *
27269932 AATGAGTGTGCAGGCGCTTAGCCAGCCAAAGAGGCATAATGCGTAAGCCGGGGATCAGCCCAGTC
193 AATGAGCGTGCAGGCGCTTAGACAGCAAAAAAGGAATAATGCGCAAGCCGGGGATCAGCCCAGTC
* * ** *
27269997 CCCCTCTGCGTGCTGTCGGTCCCGTTACCACAACCCTCATTCTGGTTGGGGCTTAGACATGGA
258 CCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCATTCCGACTAGGGCTTAGACATGGA
* * *
27270060 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGTGCTGGCGCTCAACCGACCGGA
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGTGC-GGCACTCAACCGACCAGA
* * * * * **
27270125 GAGGCAGAATTCGCAAGCTGAGGATCGGCCTGGTCCCCCCTACGTACTGTCAATCCTTTTGCCGC
65 GAAGCAAAATTCACAAGCCGAGGATCGGCCTGGTCCCCCCTACATACTGTCAATCCTGCTGCCGC
*
27270190 AACCCTCAGTCTGATCCGATCTTAGACTGGAAATAAACT-TCGTATGCCCAAGTCAACCCACGAA
130 AACCCTCAGTCTGATCCGATCTTAGACTGGAAATAAACTCT-GTATGCACAAGTCAACCCACGAA
* * **
27270254 ATGAGCGTGC-GGC-CATT-GAACAGATCAAAAAAAGGAATTATGTGCAAGCCGGGGATTGGCCC
194 ATGAGCGTGCAGGCGC-TTAG-ACAG--C-AAAAAAGGAATAATGCGCAAGCCGGGGATCAGCCC
* * *
27270316 GGTCCCCCTCTGGGTGCTGTCGGTCCCGCTGCCACAACCCTCGA-TCCGACTAGGGCTTAGACAT
254 AGTCCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTC-ATTCCGACTAGGGCTTAGACAT
27270380 GGA
318 GGA
* *
27270383 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-G-GG-ACTCAACCGGCCAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGTGCGGCACTCAACCGACCAGAG
* * * * * *
27270445 AAGCAAAATGT-ACAAGCCGAGTATCGG-TTCGGT-CCCCCTGCATGCTGTCGATCCTGCTGTCG
66 AAGCAAAAT-TCACAAGCCGAGGATCGGCCT-GGTCCCCCCTACATACTGTCAATCCTGCTGCCG
* * * * * *
27270507 CAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
129 CAACCCTCAGTCTGATCCGATCTTAGACTGGAAATAAACTCTGTATGC
27270555 TTAGACTGGG
Statistics
Matches: 412, Mismatches: 66, Indels: 33
0.81 0.13 0.06
Matches are distributed among these distances:
316 1 0.00
317 37 0.09
318 68 0.17
319 38 0.09
320 13 0.03
321 127 0.31
322 2 0.00
323 125 0.30
324 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (320 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGTGCGGCACTCAACCGACCAGAG
AAGCAAAATTCACAAGCCGAGGATCGGCCTGGTCCCCCCTACATACTGTCAATCCTGCTGCCGCA
ACCCTCAGTCTGATCCGATCTTAGACTGGAAATAAACTCTGTATGCACAAGTCAACCCACGAAAT
GAGCGTGCAGGCGCTTAGACAGCAAAAAAGGAATAATGCGCAAGCCGGGGATCAGCCCAGTCCCC
CTCTGCGTGCTGTCGGTCCCGCTACCACAACCCTCATTCCGACTAGGGCTTAGACATGGA
Found at i:27270534 original size:157 final size:156
Alignment explanation
Indices: 27269743--27270554 Score: 481
Period size: 159 Copynumber: 5.1 Consensus size: 156
27269733 TTGACTGGGG
* * * *
27269743 ATGAACTCCAC-ATGCCTAAGTCAACCCACGAAACGA-CAGTACGGGCG-GTCAGCCGACCAGAG
1 ATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGC-GTGCGGG-GACTCAACCGACCAGAG
* * * * ** * ** * * *
27269805 AGGTAGAATGTGCAAGCCGAGGATCGGCCTGGTCCCTCCTATGTGCTATCGATTTTACTGTCGTA
63 AAGCAAAATGTGCAAGCCGAGGATCGGCC-GGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCA
* * *
27269870 ACCCTCAGTCCGATCCGATCTTAGACTGTAA
127 ACCCTCGGTCCGATCTGATCTTAGACTG-GA
** * * * * * * * *
27269901 ATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGTGTGCAGGCG-CTTAGCC-AGCCAAAGA
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGGGACTCAACCGA-CCAGAGA
* * * * * * * * * * * *
27269964 GGCATAATGCGTAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCGGTCCCGTTACCACA
64 AGCAAAATGTGCAAGCCGAGGATC-GGCCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCGCA
** * * **
27270029 ACCCTCATTCTGGT-TGGGGCTTAGACATGGA
127 ACCCTCGGTCCGATCT-GATCTTAGAC-TGGA
* * * *
27270060 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGTGCTGGCGCTCAACCGACCGGA
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-G--GG-ACTCAACCGACCAGA
* * * * * * **
27270125 GAGGCAGAAT-TCGCAAGCTGAGGATCGGCCTGGTCCCCCCTACGTACTGTCAATCCTTTTGCCG
62 GAAGCAAAATGT-GCAAGCCGAGGATCGGCC-GGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCG
* * *
27270189 CAACCCTCAGTCTGATCCGATCTTAGACTGGAA
125 CAACCCTCGGTCCGATCTGATCTTAGACTGG-A
* * * * * * ** * * * * * *
27270222 ATAAACTTCGTATGCCCAAGTCAACCCACGAAATGAGCGTGCGGCCATTGAACAGATCAAAAAAA
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGACTCAACCGA-CCAGAGAA
* * * * * * * *
27270287 GGAATTATGTGCAAGCCGGGGATTGGCCCGGTCCCCCTCTGGGTGCTGTCGGTCCCGCTGCCACA
65 GCAA-AATGTGCAAGCCGAGGATCGG-CCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCGCA
* **
27270352 ACCCTCGATCCGA-CTAGGGCTTAGACATGGA
127 ACCCTCGGTCCGATCT-GATCTTAGAC-TGGA
*
27270383 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGACTCAACCGGCCAGAGAAG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGACTCAACCGACCAGAGAAG
* * * * *
27270448 CAAAATGTACAAGCCGAGTATCGGTTCGGT-CCCCCTGCATGCTGTCGATCCTGCTGTCGCAACC
66 CAAAATGTGCAAGCCGAGGATCGG-CCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACC
27270512 CTCGGTCCGATCTGATCTTAGACTGGGA
130 CTCGGTCCGATCTGATCTTAGACT-GGA
*
27270540 ATGAACTCCGTATGC
1 ATGAACTCCCTATGC
27270555 TTAGACTGGG
Statistics
Matches: 483, Mismatches: 144, Indels: 55
0.71 0.21 0.08
Matches are distributed among these distances:
156 1 0.00
157 59 0.12
158 84 0.17
159 99 0.20
160 34 0.07
161 89 0.18
162 81 0.17
163 35 0.07
164 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (156 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGACTCAACCGACCAGAGAAG
CAAAATGTGCAAGCCGAGGATCGGCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCC
TCGGTCCGATCTGATCTTAGACTGGA
Found at i:27270557 original size:26 final size:26
Alignment explanation
Indices: 27270528--27270580 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27270518 CCGATCTGAT
27270528 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27270554 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27270580 C
1 C
27270581 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27271688 original size:159 final size:160
Alignment explanation
Indices: 27271260--27271699 Score: 423
Period size: 159 Copynumber: 2.8 Consensus size: 160
27271250 AACTCCGTAT
*** * *
27271260 GCTTAGACATGGAATGAACTTGGTATGCCTAAGCCAACCCACAAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * **
27271325 CCGGCCAGAGAGGCAGAATCCACAAGCCG-GTGATCGACCCGAT-CCCCTCTGCGTGCT-ATCAA
66 CCGACCGGAGAGGTAGAATGCGTAAGCCGAG-GATCGACCCGATCCCCCTCTGCGTGCTGATCAA
** * * *
27271387 TCTTGCTGCCACAACCCTCGGTTCGATCCGA
130 TCCAGCTGCCACAACCCTCGATCCGATCAGA
* * * ** * * * *
27271418 TCTTAGAC-TGGGAAAGAACTCCATATGCATAAGTGAACCCATGGAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
27271482 GCTGACCGAAGAGGT-GTAATGCGTAAG-CTAGGGAT-TAGCCCGGTCCCCCTCTGCGTGCTGCT
65 GCCGACCGGAGAGGTAG-AATGCGTAAGCCGA-GGATCGA-CCCGATCCCCCTCTGCGTGCTGAT
* * *
27271544 -AGTCCAGCTGCCACAACCCTCGATCC-AGCTAGG
127 CAATCCAGCTGCCACAACCCTCGATCCGATC-AGA
* *
27271577 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
*
27271642 CCGACCGGAGAGGTAGAATGCGTAAGCCGAGGATCGACTCGATCCCCC-CTGCGTGCTG
66 CCGACCGGAGAGGTAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTG
27271700 TCGATCCTGC
Statistics
Matches: 219, Mismatches: 51, Indels: 24
0.74 0.17 0.08
Matches are distributed among these distances:
157 4 0.02
158 85 0.39
159 124 0.57
160 6 0.03
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.18
Consensus pattern (160 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGTAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGATCAAT
CCAGCTGCCACAACCCTCGATCCGATCAGA
Found at i:27271777 original size:26 final size:26
Alignment explanation
Indices: 27271738--27271788 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27271728 GGTTTGATCC
27271738 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
27271764 TAGACTAGGG-ATGAACTCCGTATGC
1 TAGACT-GGGAATGAACTCCATATGC
27271789 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:27272651 original size:26 final size:26
Alignment explanation
Indices: 27272622--27272674 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27272612 CCGGTCTGAT
27272622 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCTGTATG
*
27272648 CTTAGATTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
27272674 C
1 C
27272675 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATG
Found at i:27273922 original size:26 final size:26
Alignment explanation
Indices: 27273893--27273945 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27273883 CTGGTCTGAT
*
27273893 CTTAGAC-TCGAAATGAACTCCGTATG
1 CTTAGACAT-GAAATGAACTACGTATG
*
27273919 CTTAGACATGGAATGAACTACGTATG
1 CTTAGACATGAAATGAACTACGTATG
27273945 C
1 C
27273946 CTAAGGCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGAAATGAACTACGTATG
Found at i:27274434 original size:26 final size:26
Alignment explanation
Indices: 27274393--27274445 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27274383 TCCGGTCGAT
27274393 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
* *
27274419 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
27274445 C
1 C
27274446 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:27275045 original size:11 final size:11
Alignment explanation
Indices: 27275029--27275057 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
27275019 TAGGCTCTCT
27275029 GACGATGCTCC
1 GACGATGCTCC
27275040 GACGATGCTCC
1 GACGATGCTCC
27275051 GACGATG
1 GACGATG
27275058 GTGCCCCATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (11 bp):
GACGATGCTCC
Found at i:27275165 original size:26 final size:26
Alignment explanation
Indices: 27275126--27275179 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
27275116 TGGCTCAAAA
*
27275126 GCTTAGACTGGGAATGAACTCTGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
27275152 GCTTAGACAT-GGAATGAACTCCGTAT
1 GCTTAGAC-TGGGAATGAACTCCGTAT
27275178 GC
1 GC
27275180 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:27275537 original size:159 final size:158
Alignment explanation
Indices: 27275152--27275654 Score: 416
Period size: 159 Copynumber: 3.2 Consensus size: 158
27275142 AACTCTGTAT
*
27275152 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * *
27275217 CCGACCGGAGAGACAGAATGCGCAAGTCGGGGATCAGCCCGGTCCCACCCTACGTGCTGTCGATC
66 CCGGCC-GAAAGACAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCACCCTACGTGCTGTCGATC
* * * *
27275282 CTGCTGTCATAAATCTCGGTCCGATCTGA
130 CTACTGCCACAAACCTCGGTCCGATCTGA
* * * * * * *
27275311 TCTTAGAC-TAGGAATGAACTCCGTATGCATAAG-TCAACCCACGAAACGAGCTTACAGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCGTGCGGGCGCTC
* ** * * *
27275374 AACCGGCC-AAAGACGTAAAATGCGTAAGCCGGGGATTGGCCCAATTCCC-CTCTGCGTGC-GTT
64 AACCGGCCGAAAGAC--AAAATGCGCAAGCCGGGGATCAGCCC-AGTCCCACCCTACGTGCTG-T
* * * *
27275436 CGGT-CTCACTGCCACAACCCTCTGTCCGAT-TGGG
125 CGATCCT-ACTGCCACAAACCTCGGTCCGATCT-GA
* * *
27275470 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGCGTGTGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * * * *
27275535 CCGGCTGAAGAGGCAGAATACGCAAGCTGGGGATCAGCCCGGT-AC-CCCTACGTGCTATCGATC
66 CCGGCCGAA-AGACAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCACCCTACGTGCTGTCGATC
* * * * *
27275598 CTGCTGCCACAACCCTCGATCTAGTTC-GA
130 CTACTGCCACAAACCTCGGTC-CGATCTGA
* *
27275627 TCTTACAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
27275655 TTAAACTGGG
Statistics
Matches: 266, Mismatches: 61, Indels: 36
0.73 0.17 0.10
Matches are distributed among these distances:
156 1 0.00
157 58 0.22
158 10 0.04
159 186 0.70
160 8 0.03
161 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGCCGAAAGACAAAATGCGCAAGCCGGGGATCAGCCCAGTCCCACCCTACGTGCTGTCGATCC
TACTGCCACAAACCTCGGTCCGATCTGA
Found at i:27275677 original size:25 final size:26
Alignment explanation
Indices: 27275628--27275679 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
27275618 CTAGTTCGAT
*
27275628 CTTACACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
27275654 CTTAAACTGGG-ATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
27275679 C
1 C
27275680 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:27276045 original size:26 final size:26
Alignment explanation
Indices: 27276007--27276059 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27275997 CTGGTCTGAT
27276007 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
27276033 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
27276059 C
1 C
27276060 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27276165 original size:366 final size:357
Alignment explanation
Indices: 27275443--27276125 Score: 764
Period size: 366 Copynumber: 1.9 Consensus size: 357
27275433 GTTCGGTCTC
* * *
27275443 ACTGCCACAACCCTCTGTCCGATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAAC
1 ACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * *
27275508 CCACGAAACGGGCGTGTGGGCGCTCAACCGGCTGAAGAGGCAGAATACGCAAGCTGGGGATCAGC
66 CAACGAAACGAGCGTGCGGGCGCTCAACCAGCCGAAGAGGCAGAATACACAAGCTGGGGATCAGC
* *
27275573 CCGGTACCCCTACGTGCTATCGATCCTGCTGCCACAACCCTCGATCTAGTTCGATCTTACACTGG
131 CCGATACCCCTACGTGCTATCGATCCTGCTGCCACAACCCTCGATCTAGTTCGATCTTACACTAG
* * *
27275638 GAATGAACTCCGTATGCTTAAACTGGGATGAACTCTGTATGCCTAGGTCAACCCACGAAACGAGC
196 GAATGAACTCCGTATGCTTAAACTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGC
**
27275703 ATTTGGGCACTCAGCCGACCAGAGAGGCCGGTCGGAGAGACATAATGCGTAAGCCGAGGATCACC
261 ATGCGGGCACTCAGCCGACCAGAGA---CGGTC---GAG--A-AATGCGTAAGCCGAGGATCACC
* * **
27275768 CTAATCCCCCTTTGCATGCTGCCGATCCTGCTACCAGTCCT
317 CTAATCCCCCTCTACATGCTGCAAATCCTGCTACCAGTCCT
*
27275809 ACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * *
27275874 CAACGAAACGAGCGTGCGGGCGCTCAGCTAGCCGGAGAGGCAGAATGCACAAGCTGGGGATCGGC
66 CAACGAAACGAGCGTGCGGGCGCTCAACCAGCCGAAGAGGCAGAATACACAAGCTGGGGATCAGC
* * * * * *
27275939 GCGATCCCCCCTGCGTGCTGTCGATCCTGCTACTAGTCCTACTACCGCAACCCTCGGTCT-GGTC
131 CCGAT-ACCCCTACGTGCTATCGATCCTG---CT-G--C--C-A---CAACCCTCGATCTAGTTC
* *
27276003 TGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCA
183 -GATCTTACACTAGGAATGAACTCCGTATGCTTAAAC-TGGAATGAACTCTGTATGCCTAAGCCA
* * ** *
27276068 ACCCATGAAACGAGCGTGCGGGTGCTCAGCCGATCAGAGA-GG-C-AG-AATGCGTAAGCCG
246 ACCCACGAAACGAGCATGCGGGCACTCAGCCGACCAGAGACGGTCGAGAAATGCGTAAGCCG
27276126 GGGACCGGCT
Statistics
Matches: 267, Mismatches: 35, Indels: 29
0.81 0.11 0.09
Matches are distributed among these distances:
366 118 0.44
367 33 0.12
370 2 0.01
371 3 0.01
373 1 0.00
375 2 0.01
376 3 0.01
378 3 0.01
379 45 0.17
380 57 0.21
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (357 bp):
ACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CAACGAAACGAGCGTGCGGGCGCTCAACCAGCCGAAGAGGCAGAATACACAAGCTGGGGATCAGC
CCGATACCCCTACGTGCTATCGATCCTGCTGCCACAACCCTCGATCTAGTTCGATCTTACACTAG
GAATGAACTCCGTATGCTTAAACTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGC
ATGCGGGCACTCAGCCGACCAGAGACGGTCGAGAAATGCGTAAGCCGAGGATCACCCTAATCCCC
CTCTACATGCTGCAAATCCTGCTACCAGTCCT
Found at i:27276544 original size:26 final size:26
Alignment explanation
Indices: 27276508--27276560 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27276498 TTGGTCTAAT
*
27276508 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27276534 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27276560 C
1 C
27276561 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27276891 original size:26 final size:26
Alignment explanation
Indices: 27276850--27276902 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27276840 CCGGTCTGAT
*
27276850 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
27276876 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
27276902 C
1 C
27276903 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:27277609 original size:26 final size:26
Alignment explanation
Indices: 27277571--27277621 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27277561 GGCTCAAACT
27277571 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27277597 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
27277622 TCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27277976 original size:158 final size:158
Alignment explanation
Indices: 27277601--27277981 Score: 389
Period size: 159 Copynumber: 2.4 Consensus size: 158
27277591 CGTATGCTTA
* * *
27277601 GACATGGAATGAACTCCGTATTCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAAT
1 GACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGAT
* * * * *
27277666 CGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCTCTCTGCGTGCTGCCGGTCCCACT
65 CGAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCTCTCTGCGTGCGGCCGATCCCACT
* *
27277731 GCCACAACCCTCGGTCTGGCTAGGGCTTC
130 GCCACAACCCTCGGTCTGGCTAGAGATTC
* * * *
27277760 GACATGGAATGAACTCCCTATGCCTAAGCAAACCCACGAAACG-GTCGTGTGAGTGCTCAGCCGG
1 GACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAG-CGTGTGGGCGCTCAGCCGA
* * * *
27277824 TCTG-AGAGGCAGAATATGCAAGCCGAGGATCGACCCGGTCCC-C-CGTGCGTGCGGCCGATTCT
64 TC-GAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCTCTC-TGCGTGCGGCCGATCCC
* * * * * *
27277886 ACTGTCGCATCCCTCTGTC-GGATCT-GATATTT
127 ACTGCCACAACCCTCGGTCTGG--CTAGAGATTC
* * *
27277918 GAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGCGTGGGCGCTCAGCCGA
1 GACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGA
27277982 CCAGAGAGGT
Statistics
Matches: 182, Mismatches: 31, Indels: 19
0.78 0.13 0.08
Matches are distributed among these distances:
157 4 0.02
158 85 0.47
159 92 0.51
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGATC
GAAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCTCTCTGCGTGCGGCCGATCCCACTG
CCACAACCCTCGGTCTGGCTAGAGATTC
Found at i:27277989 original size:158 final size:157
Alignment explanation
Indices: 27277601--27277990 Score: 387
Period size: 158 Copynumber: 2.5 Consensus size: 157
27277591 CGTATGCTTA
* * *
27277601 GACATGGAATGAACTCCGTATTCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAAT
1 GACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGAT
* * * * *
27277666 CGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCTCTCTGCGTGCTGCCGGTCCCACT
65 CG-AGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCTCTCTGCGTGCGGCCGATCCCACT
* *
27277731 GCCACAACCCTCGGTCTGGCTAGGGCTTC
129 GCCACAACCCTCGGTCTGGCTAGAGATTC
* * * *
27277760 GACATGGAATGAACTCCCTATGCCTAAGCAAACCCACGAAACG-GTCGTGTGAGTGCTCAGCCGG
1 GACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAG-CGTGTGGGCGCTCAGCCGA
* * * *
27277824 TCTGAGAGGCAGAATATGCAAGCCGAGGATCGACCCGGTCCC-C-CGTGCGTGCGGCCGATTCTA
64 TC-GAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCTCTC-TGCGTGCGGCCGATCCCA
* * * * * *
27277887 CTGTCGCATCCCTCTGTC-GGATCT-GATATTT
127 CTGCCACAACCCTCGGTCTGG--CTAGAGATTC
* * *
27277918 GAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGCGTGGGCGCTCAGCCGA
1 GACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGA
*
27277982 CCAGAGAGG
64 TC-GAGAGG
27277991 TCGGTCGGAG
Statistics
Matches: 189, Mismatches: 33, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
157 4 0.02
158 92 0.49
159 92 0.49
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
GACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGATC
GAGAGGCAGAATACGCAAGCCGAGGATCGACCCGATCCCTCTCTGCGTGCGGCCGATCCCACTGC
CACAACCCTCGGTCTGGCTAGAGATTC
Found at i:27278140 original size:26 final size:26
Alignment explanation
Indices: 27278098--27278150 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27278088 CCGGTCCGAT
*
27278098 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
27278124 CTTAGATAT-GGATTGAACTCCGTATG
1 CTTAGAT-TGGGAATGAACTCCGTATG
27278150 C
1 C
27278151 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:27278333 original size:26 final size:26
Alignment explanation
Indices: 27278282--27278334 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27278272 CCGGTCCGAT
**
27278282 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27278308 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
27278334 C
1 C
27278335 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27278956 original size:26 final size:26
Alignment explanation
Indices: 27278920--27278972 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27278910 CCGGTCTGAT
27278920 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
27278946 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27278972 C
1 C
27278973 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27279690 original size:26 final size:26
Alignment explanation
Indices: 27279661--27279713 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27279651 CCGGTCTGAT
* *
27279661 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
27279687 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
27279713 C
1 C
27279714 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:27280070 original size:26 final size:26
Alignment explanation
Indices: 27280041--27280145 Score: 194
Period size: 26 Copynumber: 4.0 Consensus size: 26
27280031 CTGATCCGAT
27280041 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
27280067 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27280093 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27280119 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27280145 C
1 C
27280146 CTAAGCCAAC
Statistics
Matches: 78, Mismatches: 0, Indels: 2
0.98 0.00 0.03
Matches are distributed among these distances:
26 77 0.99
27 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27280621 original size:26 final size:26
Alignment explanation
Indices: 27280592--27280644 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
27280582 CTAGTCTGAT
27280592 CTTAGACT-GGGAATGAA-CTCTGTATG
1 CTTAGACTAGGG-AT-AACCTCTGTATG
27280618 CTTAGACTAGGGATAACCTCTGTATG
1 CTTAGACTAGGGATAACCTCTGTATG
27280644 C
1 C
27280645 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 20 0.80
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATAACCTCTGTATG
Found at i:27282257 original size:196 final size:195
Alignment explanation
Indices: 27281876--27282302 Score: 482
Period size: 196 Copynumber: 2.2 Consensus size: 195
27281866 TCTGACTGGG
* * * *
27281876 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAACAGGCAGTCGTTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACAGACAGGCGCTCAA
* * ** * *
27281941 CCGGCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTGCTGATCCT
66 CCGGCAGAGAGGCAGAATGCGCAAGTCGGGGACCAACCCGATCCCCCCTACATGCTGCTGATCCT
* * ** * ** * * *
27282006 GCTACTGGTCCTACTGTTGCAACCCTCGGTTTGGTCCGATCTTAGATTGGGAATGAACTCCATAT
131 CCTACTAGTCCTACTGTCACAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCATAT
* * * * *
27282071 GGTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGC-GTACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACAG-ACAGGCGCTCA
** * *
27282135 GTCGGTCAGAGAGGCAGAATGCGTAAG-CTGGGGACCAACCCGATCCCCCCTGCATGCT-CTTGA
65 ACCGG-CAGAGAGGCAGAATGCGCAAGTC-GGGGACCAACCCGATCCCCCCTACATGCTGC-TGA
* *
27282198 TCTTCCTACTAGTCCTGCTGTCACAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCC
127 TCCTCCTACTAGTCCTACTGTCACAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCC
27282263 ATAT
192 ATAT
* * **
27282267 GCTTAGACATCGAATGAACTCCATACACCTAAGCCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
27282303 GCTCATGAAA
Statistics
Matches: 191, Mismatches: 37, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
194 1 0.01
195 58 0.30
196 132 0.69
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.22
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACAGACAGGCGCTCAA
CCGGCAGAGAGGCAGAATGCGCAAGTCGGGGACCAACCCGATCCCCCCTACATGCTGCTGATCCT
CCTACTAGTCCTACTGTCACAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCATAT
Found at i:27282328 original size:196 final size:196
Alignment explanation
Indices: 27281947--27282380 Score: 451
Period size: 196 Copynumber: 2.2 Consensus size: 196
27281937 TCAACCGGCG
* ** * * *
27281947 GAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCCTACGTGCTGCTGATCCTGCTACT
1 GAGAGGCAGAATGCGCAAGTCGGGGACCAACCCGATCCCCCCTACATGCTGCTGATCCTCCTACT
* ** * ** * * * *
27282012 GGTCCTACTGTTGCAACCCTCGGTTTGGTCCGATCTTAGATTGGGAATGAACTCCATATGGTTAG
66 AGTCCTACTGTCACAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCATATGCTTAG
* * ** *
27282077 ACAAGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTACGGGCGCTCAGTCGGTC
131 ACAACGAATGAACTCCATACACCTAAGCCAACCTACGAAACGAGCGTACGGGCGCTCAGTCGGTC
27282142 A
196 A
* * *
27282143 GAGAGGCAGAATGCGTAAG-CTGGGGACCAACCCGATCCCCCCTGCATGCT-CTTGATCTTCCTA
1 GAGAGGCAGAATGCGCAAGTC-GGGGACCAACCCGATCCCCCCTACATGCTGC-TGATCCTCCTA
*
27282206 CTAGTCCTGCTGTCACAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCATATGCTT
64 CTAGTCCTACTGTCACAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCATATGCTT
* * * ** * *
27282271 AGACATCGAATGAACTCCATACACCTAAGCC-AGCTCATGAAACGAGCGTGTGGGCGCTTAGCCG
129 AGACAACGAATGAACTCCATACACCTAAGCCAACCT-ACGAAACGAGCGTACGGGCGCTCAGTCG
** *
27282335 ACCG
193 GTCA
* * * ** *
27282339 GAAAGGCAGAATGCGCAAGCCGAGGACCGGCCCGGTCCCCCC
1 GAGAGGCAGAATGCGCAAGTCGGGGACCAACCCGATCCCCCC
27282381 CTGCGTGCTA
Statistics
Matches: 193, Mismatches: 41, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
195 5 0.03
196 187 0.97
197 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (196 bp):
GAGAGGCAGAATGCGCAAGTCGGGGACCAACCCGATCCCCCCTACATGCTGCTGATCCTCCTACT
AGTCCTACTGTCACAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCATATGCTTAG
ACAACGAATGAACTCCATACACCTAAGCCAACCTACGAAACGAGCGTACGGGCGCTCAGTCGGTC
A
Found at i:27282624 original size:159 final size:158
Alignment explanation
Indices: 27282267--27282761 Score: 487
Period size: 158 Copynumber: 3.1 Consensus size: 158
27282257 AACTCCATAT
* * * * * * *
27282267 GCTTAGACATCGAATGAACTCCATACACCTAAGCCAGCTCATGAAACGAGCGTGTGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATACACCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * * *
27282332 CCGACCGGAAAGGCAGAATGCGCAAGCCGAGGACCGGCCCGGTCCCCCCCTGCGTGCTATGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTATGATCC
*
27282397 TGCTACCAAAACCCTCGGTCCGGTCTGA
131 TACTACCAAAACCCTCGGTCCGGTCTGA
* * * *
27282425 TCTTAGAC-TAGGAATGAACTCTATACACCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATACACCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
* * * * * * * *
27282489 GCTGGCCAGAGAGGCATAATACGCAAGTCGGGGATCGACCCGATCCCCCTCTGCGTGCTATCGGT
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTAT--GA
* * * *
27282554 TCC-ACTGCCACAACCCTCGGTCTGG-CTAGG
128 TCCTACTACCAAAACCCTCGGTCCGGTCT-GA
* ** * * *
27282584 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCATACACCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * **
27282649 CCGGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGGT-CCCCTCTGCGTGCTGCCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCT-ATGATC
** * * *
27282713 CTACTACCGCAATCCTCAGTCTGGTCTGA
130 CTACTACCAAAACCCTCGGTCCGGTCTGA
* *
27282742 TCTTTGAC-TAGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
27282762 TCGTATTCTT
Statistics
Matches: 271, Mismatches: 57, Indels: 18
0.78 0.16 0.05
Matches are distributed among these distances:
157 6 0.02
158 152 0.56
159 108 0.40
160 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATACACCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTATGATCC
TACTACCAAAACCCTCGGTCCGGTCTGA
Found at i:27285539 original size:26 final size:26
Alignment explanation
Indices: 27285501--27285553 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27285491 CTGGTCTGAC
27285501 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27285527 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27285553 C
1 C
27285554 CTAAGCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27286018 original size:26 final size:26
Alignment explanation
Indices: 27285989--27286041 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27285979 GACTCAAAAT
*
27285989 CTTAGAC-TGGGACTGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
27286015 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27286041 C
1 C
27286042 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27286530 original size:26 final size:26
Alignment explanation
Indices: 27286489--27286540 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27286479 CTAGACCGAT
*
27286489 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27286515 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27286541 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27287162 original size:159 final size:158
Alignment explanation
Indices: 27286892--27287385 Score: 517
Period size: 159 Copynumber: 3.1 Consensus size: 158
27286882 GCTTAGACAT
* * * * *
27286892 GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTACGGGCGCTCAACCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAA
* ** * * *
27286957 AGGCAGAATGCACAAGTTGAGGACCGGCCC-AGTCCCCGCTTGCGTGCTATCGATCCTGCTGCCG
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGA-TCCCC-CTTGCGTGCTATCGATCCTGCTGCCA
27287021 CAACCCTCGGTCCGGTTCGATCTTAGATTG
129 CAACCCTCGGTCCGGTTCGATCTTAGATTG
** * * * *
27287051 GGAATGAACTCCGTATGCCTAAGTTAACCCACGACACGAGCGTGCGGGCGTTGAGCCGACCGGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAA
* ** * * * *
27287116 AGGCATAATTTGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTACCGGTCCCGCTGCAAC
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCT-TGCGTGCTATCGATCCTGCTGCCAC
* ** *
27287181 AACCCTCGGTCCGGTTGGGGCTTAGACAT-
130 AACCCTCGGTCCGGTTCGATCTTAGA-TTG
* ** * * *
27287210 GGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGAACGTGCGGGCGCTCAGTCGGTC-GAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAA
* * ** * * *
27287274 GAGGTAGAATGCGCAAGCCAGGGATTAGCCCGGTCCCCCTTACGTGCTGTCGATCCTGCTGCCAC
66 -AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTTGCGTGCTATCGATCCTGCTGCCAC
* * *
27287339 AACCCTCGGTCTGATCCGATCTTAGATTG
130 AACCCTCGGTCCGGTTCGATCTTAGATTG
*
27287368 GGAATGAACTCCGCATGC
1 GGAATGAACTCCGTATGC
27287386 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 63, Indels: 11
0.78 0.18 0.03
Matches are distributed among these distances:
157 1 0.00
158 60 0.22
159 204 0.76
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAA
AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTTGCGTGCTATCGATCCTGCTGCCACA
ACCCTCGGTCCGGTTCGATCTTAGATTG
Found at i:27287411 original size:26 final size:26
Alignment explanation
Indices: 27287359--27287411 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27287349 CTGATCCGAT
* *
27287359 CTTAGATTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
* *
27287385 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
27287411 C
1 C
27287412 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:27288377 original size:158 final size:158
Alignment explanation
Indices: 27288110--27288431 Score: 425
Period size: 158 Copynumber: 2.0 Consensus size: 158
27288100 AATAAACTTT
* * * *
27288110 GTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGGTCGGAGAGGTAGAATGCG
1 GTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCAGCCGGCCGGAGAGGTACAATGCA
* * * *
27288175 CAAACTGGAGACTGGCCCCATCCCCCCTACGTGCTGTTGATCCTGCTGTAGCAACCCTC-AGTCC
66 CAAACTGGAGACTGGCCCCATCCCCCCCACATGCTGTCGATCCTGCTGCAGCAACCCTCGA-TCC
27288239 GGTCTGATCTTAGACTGGGAATGAACTCC
130 GGTCTGATCTTAGACTGGGAATGAACTCC
* *
27288268 GTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAGCCGGCCGGAGA-GTGACAATGC
1 GTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCAGCCGGCCGGAGAGGT-ACAATGC
* * * * * * *
27288332 AC-AAGTCGGTGATTGGCTCGATCCCCCCCACATGCTGTCGATCCTGCTGCCGTAACCCTCGATC
65 ACAAACT-GGAGACTGGCCCCATCCCCCCCACATGCTGTCGATCCTGCTGCAGCAACCCTCGATC
* *
27288396 CGGTCTGATCTTAGACTGGGATTGAACTTC
129 CGGTCTGATCTTAGACTGGGAATGAACTCC
27288426 GTATGC
1 GTATGC
27288432 TTAGACATGG
Statistics
Matches: 142, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
157 5 0.04
158 136 0.96
159 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (158 bp):
GTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGAGCTCAGCCGGCCGGAGAGGTACAATGCA
CAAACTGGAGACTGGCCCCATCCCCCCCACATGCTGTCGATCCTGCTGCAGCAACCCTCGATCCG
GTCTGATCTTAGACTGGGAATGAACTCC
Found at i:27288447 original size:26 final size:26
Alignment explanation
Indices: 27288405--27288457 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27288395 CCGGTCTGAT
* *
27288405 CTTAGACTGGGATTGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27288431 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27288457 C
1 C
27288458 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27288560 original size:184 final size:184
Alignment explanation
Indices: 27288247--27288615 Score: 415
Period size: 184 Copynumber: 2.0 Consensus size: 184
27288237 CCGGTCTGAT
* * * * *
27288247 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCATGCAGGCGCTCAGC
* * * * * * *
27288312 CGGCCGGAGAGTGACAATGCACAAGTCGGTGATTGGCTCGATCCCCCCCACATGCTGTCGATCCT
66 CAGCCGGAGAGTGACAATGCACAAGCCAGTGACTAGCCCGATCCCCCCCACATGCTGCCGATCCT
** * * * *
27288377 GCT-GCCGTAACCC-TCGATCCGGTCTGATCTTAGACTGGGATTGAACTTCGTATG
131 G-TAGCCACAACCCATAG-TCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATG
*
27288431 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCGTGCAGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCATGCAGGCGCTCAG
* * * ** * *
27288495 CCAGCCGGAGAG-GCAGAATGCGCAAGCCAAG-GACTAGCCCGATCCCTCTTACGTGTTGCCGAT
65 CCAGCCGGAGAGTG-ACAATGCACAAGCC-AGTGACTAGCCCGATCCCCCCCACATGCTGCCGAT
*
27288558 CCTGTAGCCACAACCCATAGTTCGGTCTAATCTTAGACTGGGAATGAACTCCGTATG
128 CCTGTAGCCACAACCCATAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATG
27288615 C
1 C
27288616 CTAAGTCAAC
Statistics
Matches: 153, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
183 2 0.01
184 147 0.96
185 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (184 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCATGCAGGCGCTCAGC
CAGCCGGAGAGTGACAATGCACAAGCCAGTGACTAGCCCGATCCCCCCCACATGCTGCCGATCCT
GTAGCCACAACCCATAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATG
Found at i:27288664 original size:342 final size:342
Alignment explanation
Indices: 27288031--27288664 Score: 864
Period size: 342 Copynumber: 1.9 Consensus size: 342
27288021 CTACTACTGG
* *
27288031 TCCTGCTGCCGTAACCCTTAGTCTAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTGCCGTAACCCTGAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
** * * * * *
27288096 ATGGAATAAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGCCGGTCGG
66 ATGGAATAAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCGTGCAGGAGCTCAGCCAGCCGG
* ** * ** *
27288161 AGAGGTAGAATGCGCAAACTGGAGACTGGCCCCATCCCCCCTACGTGCTGTTGATCCTGCTGTAG
131 AGAGGCAGAATGCGCAAACAAGAGACTAGCCCCATCCCCCCTACGTGCTGCCGATCCTGCTGCAG
* *
27288226 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
196 CAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * *
27288291 ACGAGCATGCGGGTGCTCAGCCGGCCGGAGAGTGACAATGCACAAGTCGGTGATTGGCTCGATCC
261 ACGAGCATGCGAGCGCTCAGACGGCCGGAGAGTGACAATGCACAAGTCGGTGATTGGCTCGATCC
27288356 CCCCCACATGCTGTCGA
326 CCCCCACATGCTGTCGA
* * * *
27288373 TCCTGCTGCCGTAACCCTCGA-TCCGGTCTGATCTTAGACTGGGATTGAACTTCGTATGCTTAGA
1 TCCTGCTGCCGTAACCCT-GAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
* *
27288437 CATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCGTGCAGGCGCTCAGCCAGCCG
65 CATGGAATAAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCGTGCAGGAGCTCAGCCAGCCG
* * * * *
27288502 GAGAGGCAGAATGCGCAAGCCAAG-GACTAGCCCGATCCCTCTTACGTGTTGCCGATCCTG-TAG
130 GAGAGGCAGAATGCGCAA-ACAAGAGACTAGCCCCATCCCCCCTACGTGCTGCCGATCCTGCT-G
*
27288565 CCA-CAACCCAT-AGTTCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
193 -CAGCAACCC-TCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * *
27288628 ACGAAACGAGCGTGCGAGCGCTGAGACGGTCGGAGAG
256 ACGAAACGAGCATGCGAGCGCTCAGACGGCCGGAGAG
27288665 GCATAATGCG
Statistics
Matches: 251, Mismatches: 36, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
341 1 0.00
342 245 0.98
343 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (342 bp):
TCCTGCTGCCGTAACCCTGAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
ATGGAATAAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCGTGCAGGAGCTCAGCCAGCCGG
AGAGGCAGAATGCGCAAACAAGAGACTAGCCCCATCCCCCCTACGTGCTGCCGATCCTGCTGCAG
CAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCATGCGAGCGCTCAGACGGCCGGAGAGTGACAATGCACAAGTCGGTGATTGGCTCGATCC
CCCCCACATGCTGTCGA
Found at i:27291413 original size:26 final size:26
Alignment explanation
Indices: 27291376--27291427 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27291366 GCTCAAAATG
*
27291376 TTAGACTAGGAATGAACACCGTATGC
1 TTAGACTAGGAATGAACACCGCATGC
*
27291402 TTAGAC-ATGGAATGAACTCCGCATGC
1 TTAGACTA-GGAATGAACACCGCATGC
27291428 CTAAGCAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (26 bp):
TTAGACTAGGAATGAACACCGCATGC
Found at i:27292633 original size:25 final size:25
Alignment explanation
Indices: 27292599--27292648 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
27292589 CAGTCCAATC
*
27292599 TTAGACTGGGAATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCCGTATG
*
27292624 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
27292649 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (25 bp):
TTAGACTGGGAATGAACTCCGTATG
Found at i:27293116 original size:159 final size:157
Alignment explanation
Indices: 27292635--27293232 Score: 581
Period size: 159 Copynumber: 3.8 Consensus size: 157
27292625 TAGACTGGGG
* ** *
27292635 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTAGGCGCTGAGCCGACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG
* * * * * * * *
27292700 CATAATGCGCAAGTCGGGGATCGACCTGGTCCCCCTTTGCGTGCTGCCGATCCCGCTGCCACAAC
66 CAGAATGCACAAGCCAGGGATCGGCCCGAT-CCCC-TTGCGTGCTGTCGATCCCGCTGCCACAAC
*
27292765 CCTCGGTCCGGCTAGGGCTTAGACATGCA
129 CCTCGGTCCGGCTAGGGCTTAGACATGGA
* * * * * *
27292794 ATTAACTCCCTATGGCTAAGCCAACCCACGAAACGGGCGTCCGGGTGCTCAGCC-AGCCGGAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCGGAGAG
* * * * * * * **
27292858 GCAGAATG-AGTAAGTCAAGGATCGGCCCGATCCCCTTGCATGCTATCAATCCTGCTGCTGCAAC
65 GCAGAATGCA-CAAGCCAGGGATCGGCCCGATCCCCTTGCGTGCTGTCGATCCCGCTGCCACAAC
* * ** * *
27292922 CCTCGGTCTGGTCCA-ATCTTAGACTTAGA
129 CCTCGGTCCGG-CTAGGGCTTAGACATGGA
* * * * * * * *
27292951 ATGAACTCCGTATGCATAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGAGCCGACTGAAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG
* * * * * *
27293016 CATAATGCATAAGCCAGGGATCGGCCCAATCTCCGTCTGCGTGCTGTTGGTCCCGCTGCCACAAC
66 CAGAATGCACAAGCCAGGGATCGGCCCGATC-CCCT-TGCGTGCTGTCGATCCCGCTGCCACAAC
*
27293081 CCTCGGTCCGGCTGGGGCTTAGACATGGA
129 CCTCGGTCCGGCTAGGGCTTAGACATGGA
* * *
27293110 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG
* * * * * *
27293175 CAGAATGCACAAGCCGGGGATCAGTCCGGTCCCCCTTACGTGCTGTCGATCCTGCTGC
66 CAGAATGCACAAGCCAGGGATCGGCCCGAT-CCCCTTGCGTGCTGTCGATCCCGCTGC
27293233 TGGTCCTGCT
Statistics
Matches: 343, Mismatches: 87, Indels: 19
0.76 0.19 0.04
Matches are distributed among these distances:
157 117 0.34
158 31 0.09
159 194 0.57
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGG
CAGAATGCACAAGCCAGGGATCGGCCCGATCCCCTTGCGTGCTGTCGATCCCGCTGCCACAACCC
TCGGTCCGGCTAGGGCTTAGACATGGA
Found at i:27293550 original size:158 final size:159
Alignment explanation
Indices: 27293303--27293792 Score: 417
Period size: 159 Copynumber: 3.1 Consensus size: 159
27293293 GCTTAGACAT
* *
27293303 GGAATGAACTCCATTTGCCTAAGCCAATCCACGAAACGAGTGTGCGGGCGCTCAACCGACCAGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAACCGACCAGAG
* *
27293368 AGGCAGAATGCGCAAGCCGAGGATCGACCCTGTCCCCCT-TGCGTGCTGTCGATCCT-ACTACCA
66 AGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCTGTCGAT-CTGACTACCA
*
27293431 TAACCCTCAATCCGGTCCGATCTTAGATTG
130 CAACCCTCAATCCGGTCCGATCTTAGATTG
* * * * * * * **
27293461 GGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGA-TCGTGCGGGCGTTGAGCTGGCTGGA
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGT-GTGCGGGCGCTCAACCGACCAGA
* * * * * *
27293525 GAGGCATAATGCGTAAGCCGGGGATCGACCCGGTCGCCCTCTACGTGCTGTTGGTCTGACTACCA
65 GAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCTGACTACCA
** * * *
27293590 CAACCCTCGGTCCAGCTAGCG--CTTAGACAT-
130 CAACCCTCAATCC-GGT-CCGATCTTAGA-TTG
* * * * * * * *
27293620 GGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCGCTCAACCGATCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAACCGACCAGAG
* * * ** * ** * *
27293685 AGGCAGAATGTGCAAGTCGGGGATCGGGCTGGTCCCCC-CCGCGTGCTGTCAATCCTG-CT-GC-
66 AGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCTGTCGAT-CTGACTACCA
* ** * *
27293746 C-GCCCTCTGTCCGGTCTGATCTTAGACTG
130 CAACCCTCAATCCGGTCCGATCTTAGATTG
27293775 GGAATGAACTCCATATGC
1 GGAATGAACTCCATATGC
27293793 TTAGAGGGGA
Statistics
Matches: 259, Mismatches: 62, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
153 1 0.00
154 3 0.01
155 31 0.12
156 1 0.00
157 2 0.01
158 100 0.39
159 116 0.45
160 3 0.01
161 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAACCGACCAGAG
AGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACGTGCTGTCGATCTGACTACCAC
AACCCTCAATCCGGTCCGATCTTAGATTG
Found at i:27293551 original size:513 final size:512
Alignment explanation
Indices: 27292781--27293745 Score: 1209
Period size: 513 Copynumber: 1.9 Consensus size: 512
27292771 TCCGGCTAGG
* * * * * *
27292781 GCTTAGACATGCAATTAACTCCCTATGGCTAAGCCAACCCACGAAACGGGCGTCCGGGTGCTCAG
1 GCTTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAA
* * * *
27292846 CCAGCCGGAGAGGCAGAATGAGTAAGTCAAGGATCGGCCCGATCCCCTTGCATGCTATCAATCCT
66 CCAGCCAGAGAGGCAGAATGAGCAAGCCAAGGATCGACCCGATCCCCTTGCATGCTATCAATCCT
* * ** ** * *
27292911 GCTGCTGCAACCCTCGGTCTGGTCCAATCTTAGACTTAGAATGAACTCCGTATGCATAAGTCAAC
131 ACTACCACAACCCTCAATCCGGTCCAATCTTAGACTTAGAATGAACTCCATATGCATAAGTCAAC
* *
27292976 CCACAAAATGAGCGTGCGGGTGCTGAGCCGACTGAAGAGGCATAATGCATAAGCCAGGGATCGGC
196 CCACAAAATGAGCGTGCGGGCGCTGAGCCGACTGAAGAGGCATAATGCATAAGCCAGGGATCGAC
* * * * * * *
27293041 CCAATCTCCGTCTGCGTGCTGTTGGTCCCG-CTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAC
261 CCAATCGCCCTCTACGTGCTGTTGGT-CCGACTACCACAACCCTCGGTCCAGCTAGCGCTTAGAC
* * ** * * *
27293105 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGCCGG
325 ATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAACCGACCGG
* ** *
27293170 AGAGGCAGAATGCACAAGCCGGGGATCAGTCCGGTCCCCCTTACGTGCTGTCGATCCTGCTGCTG
390 AGAGGCAGAATGCACAAGCCGGGGATCAGGCCGGTCCCCCCCACGTGCTGTCAATCCTGCTGCTG
27293235 GTCCTGCTACAGCAACCCCCGATCCGATCCGATCTTAGAATGGGAATGAACTCTGTAT
455 GTCCTGCTACAGCAACCCCCGATCCGATCCGATCTTAGAATGGGAATGAACTCTGTAT
* * * * *
27293293 GCTTAGACATGGAATGAACTCCATTTGCCTAAGCCAATCCACGAAACGAGTGTGCGGGCGCTCAA
1 GCTTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAA
* * * * *
27293358 CC-GACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCTG-TCCCCCTTGCGTGCTGTCGAT
66 CCAG-CCAGAGAGGCAGAATGAGCAAGCCAAGGATCGACCC-GAT-CCCCTTGCATGCTATCAAT
* * * *
27293421 CCTACTACCATAACCCTCAATCCGGTCCGATCTTAGA-TTGGGAATGAACTCCATATGCCTAAGT
128 CCTACTACCACAACCCTCAATCCGGTCCAATCTTAGACTT-AGAATGAACTCCATATGCATAAGT
* * * * * * * *
27293485 CAACCCACGAAATGATCGTGCGGGCGTTGAGCTGGCTGGAGAGGCATAATGCGTAAGCCGGGGAT
192 CAACCCACAAAATGAGCGTGCGGGCGCTGAGCCGACTGAAGAGGCATAATGCATAAGCCAGGGAT
** *
27293550 CGACCCGGTCGCCCTCTACGTGCTGTTGGTCTGACTACCACAACCCTCGGTCCAGCTAGCGCTTA
257 CGACCCAATCGCCCTCTACGTGCTGTTGGTCCGACTACCACAACCCTCGGTCCAGCTAGCGCTTA
* * *
27293615 GACATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCGCTCAACCGAT
322 GACATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAACCGAC
** * * * *
27293680 CGGAGAGGCAGAATGTGCAAGTCGGGGATCGGGCTGGTCCCCCCCGCGTGCTGTCAATCCTGCTG
387 CGGAGAGGCAGAATGCACAAGCCGGGGATCAGGCCGGTCCCCCCCACGTGCTGTCAATCCTGCTG
27293745 C
452 C
27293746 CGCCCTCTGT
Statistics
Matches: 376, Mismatches: 72, Indels: 9
0.82 0.16 0.02
Matches are distributed among these distances:
511 1 0.00
512 91 0.24
513 284 0.76
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (512 bp):
GCTTAGACATGCAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCGCTCAA
CCAGCCAGAGAGGCAGAATGAGCAAGCCAAGGATCGACCCGATCCCCTTGCATGCTATCAATCCT
ACTACCACAACCCTCAATCCGGTCCAATCTTAGACTTAGAATGAACTCCATATGCATAAGTCAAC
CCACAAAATGAGCGTGCGGGCGCTGAGCCGACTGAAGAGGCATAATGCATAAGCCAGGGATCGAC
CCAATCGCCCTCTACGTGCTGTTGGTCCGACTACCACAACCCTCGGTCCAGCTAGCGCTTAGACA
TGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAACCGACCGGA
GAGGCAGAATGCACAAGCCGGGGATCAGGCCGGTCCCCCCCACGTGCTGTCAATCCTGCTGCTGG
TCCTGCTACAGCAACCCCCGATCCGATCCGATCTTAGAATGGGAATGAACTCTGTAT
Found at i:27293648 original size:159 final size:156
Alignment explanation
Indices: 27293293--27293710 Score: 419
Period size: 159 Copynumber: 2.6 Consensus size: 156
27293283 AACTCTGTAT
* *
27293293 GCTTAGACATGGAATGAACTCCATTTGCCTAAGCCAATCCACGAAACGAGTGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAA
* *
27293358 CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCTGTCCCCCTTGCGTGCTGTCGATCC
66 CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTTACGTGCTGTCGATCC
* *
27293423 TACTACCATAACCCTCAATCCGGTCC
131 TACTACCACAACCCTCAATCCGCTCC
* * * *
27293449 GATCTTAGA-TTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGA-TCGTGCGGGCGT
1 G--CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGT-GTGCGGGCGC
* * * * ** * * * * *
27293512 TGAGCTGGCTGGAGAGGCATAATGCGTAAGCCGGGGATCGACCCGGTCGCCCTCTACGTGCTGTT
62 TCAACCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCT-TACGTGCTGTC
* ** *
27293577 GGT-CTGACTACCACAACCCTCGGTCCAGCTAGC
126 GATCCT-ACTACCACAACCCTCAATCC-GCT-CC
* * * * * *
27293610 GCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAA
* * * * *
27293675 CCGATCGGAGAGGCAGAATGTGCAAGTCGGGGATCG
66 CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCG
27293711 GGCTGGTCCC
Statistics
Matches: 207, Mismatches: 45, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
156 1 0.00
157 2 0.01
158 94 0.45
159 105 0.51
160 3 0.01
161 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAA
CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTTACGTGCTGTCGATCC
TACTACCACAACCCTCAATCCGCTCC
Found at i:27294517 original size:26 final size:26
Alignment explanation
Indices: 27294477--27294529 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27294467 GGCTCAAAAT
27294477 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
27294503 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGAAATGAACTCCGTATG
27294529 C
1 C
27294530 CTAAACCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:27294857 original size:159 final size:158
Alignment explanation
Indices: 27294502--27294968 Score: 406
Period size: 159 Copynumber: 2.9 Consensus size: 158
27294492 AACTCCGTAT
* * * * ** **
27294502 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGAGATGGAATGAACTCTGTATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAA
* * * * * * *** * *
27294567 CCGACCGGAGAGGTAGAATGCGCAAGCC-GAGGATGGGC-CTGGCCCCCCCTGCGTGCTGTCAAT
66 CCGACCGAAGAGGCAGAATACACAAACCAG-GGATCGGCTC-AATCCCCCCTGCGTGCTGCCGAT
* * * ** * * *
27294630 CCTGTTGTCGTAACCCTCGGTCC-AGTCCGA
129 CCCGCTGCCACAACCCTCGGTCCGACT-GGG
* * * *
27294660 TCTTAGA-TTGGGAATGAACTCTGTATGCATAAGTCAACCCACAAAACGAGCGTGCGGGCACTGA
1 GCTTAGAGAT-GGAATGAACTCTGTATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCACTCA
* * * * *
27294724 ACCGACTGAAGAGGCATAATACACAAGCCAGGGATCGGCTCGATCCCCCTCTGCTTGCTGCC-AG
65 ACCGACCGAAGAGGCAGAATACACAAACCAGGGATCGGCTCAATCCCCC-CTGCGTGCTGCCGA-
27294788 TCCCGCTGCCACAACCCTCGGTCCGACTGGG
128 TCCCGCTGCCACAACCCTCGGTCCGACTGGG
* * * * *
27294819 GCTTAGAGATGGAATGAACT-TGCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCA
1 GCTTAGAGATGGAATGAACTCTG-TATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCACTCA
* * ** *
27294883 ACCGGCCGGAGAGGCAGAATACGTAAACCAGGGATCGGCTCAATCCCCCCTGCGTGTTGCCGATC
65 ACCGACCGAAGAGGCAGAATACACAAACCAGGGATCGGCTCAATCCCCCCTGCGTGCTGCCGATC
*
27294948 CTGCTGCCACAACCCTCGGTC
130 CCGCTGCCACAACCCTCGGTC
27294969 TGGTTCGATC
Statistics
Matches: 250, Mismatches: 50, Indels: 18
0.79 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 122 0.49
159 124 0.50
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGAGATGGAATGAACTCTGTATGCATAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAA
CCGACCGAAGAGGCAGAATACACAAACCAGGGATCGGCTCAATCCCCCCTGCGTGCTGCCGATCC
CGCTGCCACAACCCTCGGTCCGACTGGG
Found at i:27295555 original size:159 final size:152
Alignment explanation
Indices: 27295155--27295648 Score: 426
Period size: 159 Copynumber: 3.1 Consensus size: 152
27295145 CTTGGTACCG
*
27295155 GTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTC-CGTATGCCTAA
1 GTCCTGCTGCCACAACCCTC-GTCCGACTGGGGCTTAGA-ATGGAATGAACTCGC-TATGCCTAA
* * * * *
27295219 GCCAAACCACAAATCGAGCGT-TCGGGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAGCC-GA
63 GCCAACCCAAAAAT-GAGCGTGT-GGGCGCTCAGCCG-TCGAAGAGGCAGAATACGCAAGCCAG-
* *
27295282 GGATCGGC-CCGACCCCCTACGTGCTGTC
124 GGATCGACTCCGACCCCCTACGTGCTGCC
* * * * ** * *
27295310 GATCCTGCTACCGCAAGCCTCGATCCAGTCT-GATCTTAGACTGGGAATGAACTCTG-TATGCAT
1 G-TCCTGCTGCCACAACCCTCG-TCC-GACTGGGGCTTAGAAT-GGAATGAACTC-GCTATGCCT
* * *
27295373 AAGTCAACCCAAAAAATGAGCGTGTGGGCGCTGAGCCGTCTGAAGAGGCATAATACGCAAGCCAG
61 AAGCCAACCC-AAAAATGAGCGTGTGGGCGCTCAGCCGTC-GAAGAGGCAGAATACGCAAGCCAG
* * * *
27295438 GGATCGACTCGGTCCCCTTCTGCTTGCTGCC
124 GGATCGACTCCGACCCC--CTACGTGCTGCC
*
27295469 AGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGAGATGGAATGAACTCGCTATGCCTAA
1 -GTCCTGCTGCCACAACCCTC-GTCCGACTGGGGCTTAGA-ATGGAATGAACTCGCTATGCCTAA
* * * * *
27295534 GCCAACCCATGAAATGGGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATACGCAAGCCAGGG
63 GCCAACCCA-AAAATGAGCGTGTGGGCGCTCAGCC-GTCGAAGAGGCAGAATACGCAAGCCAGGG
* * *
27295599 ATCGACT-CAATCCCCCTTGCGTGTTGCC
126 ATCGACTCCGA-CCCCC-TACGTGCTGCC
*
27295627 GATCCTGCTGCCACGACCCTCG
1 G-TCCTGCTGCCACAACCCTCG
27295649 GTCTGGTTCG
Statistics
Matches: 270, Mismatches: 46, Indels: 44
0.75 0.13 0.12
Matches are distributed among these distances:
155 4 0.01
156 95 0.35
157 19 0.07
158 31 0.11
159 115 0.43
160 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.18
Consensus pattern (152 bp):
GTCCTGCTGCCACAACCCTCGTCCGACTGGGGCTTAGAATGGAATGAACTCGCTATGCCTAAGCC
AACCCAAAAATGAGCGTGTGGGCGCTCAGCCGTCGAAGAGGCAGAATACGCAAGCCAGGGATCGA
CTCCGACCCCCTACGTGCTGCC
Found at i:27295931 original size:683 final size:683
Alignment explanation
Indices: 27294502--27296152 Score: 2331
Period size: 683 Copynumber: 2.4 Consensus size: 683
27294492 AACTCCGTAT
* * * * *
27294502 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTACGGGCGCTCAA
* * * *
27294567 CCGACCGGAGAGGTAGAATGCGCAAGCCGAGGATGGGCCTGGCCCCCCCTGCGTGCTGTCAATCC
66 CCGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCC-CG-ACCCCCTGCGTGCTGTCGATCC
* ** * *
27294632 TGTTGTCGTAACCCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTCTGTATGCATAAGTCAA
129 TGCTACCGCAACCCTCGATCCAGTCCGATCTTAGATTGGGAATGAACTCTGTATGCATAAGTCAA
* * * * * *
27294697 CCCACAAAACGAGCGTGCGGGCACTGAACCGACTGAAGAGGCATAATACACAAGCCAGGGATCGG
194 CCCAAAAAATGAGCGTGCGGGCACTGAGCCGTCTGAAGAGGCATAATACGCAAGCCAGGGATCGA
* * *
27294762 CTCGATCCCCCTCTGCTTGCTGCCAGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGAG
259 CTCGGTCCCCTTCTGCTTGCTGCCAGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGAG
*
27294827 ATGGAATGAACTTGCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACCGGCCGG
324 ATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACCGGCCGG
* *
27294892 AGAGGCAGAATACGTAAACCAGGGATCGGCTCAATCCCCCCTGCGTGTTGCCGATCCTGCTGCCA
389 AGAGGCAGAATACGCAAACCAGGGATCGACTCAATCCCCCCTGCGTGTTGCCGATCCTGCTGCCA
27294957 CAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTTGACTGAGGATGAAC
454 CAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTTGACTGAGGATGAAC
* * * * * *
27295022 TCCGTATGCCTAAGTCAGCTCATGAAATGAGCATGCAGGTGCTCAACCGACTGGAGAGGCTGGCC
519 TCCGTATGCCTAAGTCAACTCACGAAACGAGCATACAGGTGCTCAACCAACTGAAGAGGCTGGCC
* * * * * *
27295087 GGAGAGGCATAATGCGCAAGCCAGAGATAAGCCTGGTCCTCCTCTGCGTGCTGTCGATCTTGGTA
584 AGAGAGGAATAATGCGCAAGCCAGAGATAAGCCTGGTCCCCCTCTACCTGCTGTCGATCCTGGTA
* * *
27295152 CCGGTCCTGCTGCCACAACCCTCGGTCCGGCTGGG
649 CCGGTCCTACTGCCACAACCCTCGATCCGACTGGG
*
27295187 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCAC-AAATCGAGCGTTCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAA-CGAGCGTACGGGCGCTCA
* * *
27295251 GCCGACCGAAGAGGTAGAATGCGCAAGCCGAGGATCGGCCCGACCCCCTACGTGCTGTCGATCCT
65 ACCGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCCGACCCCCTGCGTGCTGTCGATCCT
* * *
27295316 GCTACCGCAAGCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAAC
130 GCTACCGCAACCCTCGATCCAGTCCGATCTTAGATTGGGAATGAACTCTGTATGCATAAGTCAAC
* *
27295381 CCAAAAAATGAGCGTGTGGGCGCTGAGCCGTCTGAAGAGGCATAATACGCAAGCCAGGGATCGAC
195 CCAAAAAATGAGCGTGCGGGCACTGAGCCGTCTGAAGAGGCATAATACGCAAGCCAGGGATCGAC
27295446 TCGGTCCCCTTCTGCTTGCTGCCAGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGAGA
260 TCGGTCCCCTTCTGCTTGCTGCCAGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGAGA
* *
27295511 TGGAATGAACTCGCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAACCGGTCGGA
325 TGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACCGGCCGGA
* *
27295576 GAGGCAGAATACGCAAGCCAGGGATCGACTCAATCCCCCTTGCGTGTTGCCGATCCTGCTGCCAC
390 GAGGCAGAATACGCAAACCAGGGATCGACTCAATCCCCCCTGCGTGTTGCCGATCCTGCTGCCAC
* * *
27295641 GACCCTCGGTCTGGTTCGATCTTATATTGGGAATGAACTCTGTATGCTTTGACTGAGGATGAACT
455 AACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTTGACTGAGGATGAACT
* * *
27295706 CCGTATGCCTAAGTCAACTCACGAAACGAGCGTACGGGTGCTCAACCAA-TCGAAGAGGCTGGCT
520 CCGTATGCCTAAGTCAACTCACGAAACGAGCATACAGGTGCTCAACCAACT-GAAGAGGCTGGCC
* * *
27295770 AGAGAGGAATAGTGTGCAAGCCAGAGATCAGCCTGGTCCCCCTCTACCTGCTGTCGATCCTGGTA
584 AGAGAGGAATAATGCGCAAGCCAGAGATAAGCCTGGTCCCCCTCTACCTGCTGTCGATCCTGGTA
* * * *
27295835 CTGGTTCTACTGTCACAACCCTCGATCCGATTGGG
649 CCGGTCCTACTGCCACAACCCTCGATCCGACTGGG
*
27295870 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTAAGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTACGGGCGCTCAA
* * * * * * *
27295935 CCAATCGGAGAGGCAGAATGCGCGAGCTGGGGATCGACCCGATCCCCTCCTGCGTGCTGTCGATC
66 CCGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCCGA--CCC-CCTGCGTGCTGTCGATC
* ** * * * * * *
27296000 CTGCTACCACAACCCTC-AGTCTGGTCCGATATTAGTTTGGGAATGAACTCCGCATCCCTAAGTC
128 CTGCTACCGCAACCCTCGA-TCCAGTCCGATCTTAGATTGGGAATGAACTCTGTATGCATAAGTC
** * * ** *
27296064 AACCCATGAAATGAGCATGCGGGCATTGAGCCGGTC-GGGGAGGCATAATGCGCAAGCC-GAGGA
192 AACCCAAAAAATGAGCGTGCGGGCACTGAGCC-GTCTGAAGAGGCATAATACGCAAGCCAG-GGA
* * *
27296127 TCAACCCGGTCCCCTTCTGCGTGCTG
255 TCGACTCGGTCCCCTTCTGCTTGCTG
27296153 TCAAACCTTT
Statistics
Matches: 855, Mismatches: 102, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
682 1 0.00
683 610 0.71
684 7 0.01
685 97 0.11
686 137 0.16
687 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (683 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTACGGGCGCTCAA
CCGACCGGAGAGGTAGAATGCGCAAGCCGAGGATCGGCCCGACCCCCTGCGTGCTGTCGATCCTG
CTACCGCAACCCTCGATCCAGTCCGATCTTAGATTGGGAATGAACTCTGTATGCATAAGTCAACC
CAAAAAATGAGCGTGCGGGCACTGAGCCGTCTGAAGAGGCATAATACGCAAGCCAGGGATCGACT
CGGTCCCCTTCTGCTTGCTGCCAGTCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGAGAT
GGAATGAACTCGCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACCGGCCGGAG
AGGCAGAATACGCAAACCAGGGATCGACTCAATCCCCCCTGCGTGTTGCCGATCCTGCTGCCACA
ACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTTGACTGAGGATGAACTC
CGTATGCCTAAGTCAACTCACGAAACGAGCATACAGGTGCTCAACCAACTGAAGAGGCTGGCCAG
AGAGGAATAATGCGCAAGCCAGAGATAAGCCTGGTCCCCCTCTACCTGCTGTCGATCCTGGTACC
GGTCCTACTGCCACAACCCTCGATCCGACTGGG
Found at i:27296584 original size:317 final size:317
Alignment explanation
Indices: 27296040--27296843 Score: 844
Period size: 317 Copynumber: 2.5 Consensus size: 317
27296030 ATTAGTTTGG
* * * * * * * * * *
27296040 GAATGAACTCCGC-ATCCCTAAGTCAACCCATGAAATGAGCATGCGGGCATTGAGCCGGTCGGGG
1 GAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCGATCGGAG
* * * * * * * ** * * * **
27296104 AGGCATAATGCGCAAGCCGAGGATCAACCCGGTCCCCTTCTGCGTGCTGTCAAACCTTTTATCGC
65 AGACAGAATGCACAAGCCGGGGATCGACTCGGTCCCC-CCCACGTGCTATCGATCCTACTATCGC
* **
27296169 AACCCTC-AGTCCGATCTGATCTTAGATTAGGAATGAACTCTGTATGCATAAGTCAACCCACGAA
129 AACCCTCGA-TCCGATCTGATCTTAGACTAGGAATGAACTCCATATGCATAAGTCAACCCACGAA
* * * * * *
27296233 ACGAGCATACGATCACTGAGCCAGCCGAAGAGGCATAATGTGCAAGTCGAGGATCGA-CTCGATC
193 ACGAGCATACGAGCACTAAGCCAGCCGAAGAGGCATAATGCGCAAGCCAAGGACCGACCT-GATC
* * * * * * * *
27296297 CCCCTCTGCGTGTTGCCGGTCCCGCTGCCATAACCCTCGGTCCGGCTGGGGCTTAGACATG
257 CCCCTCTGCGTGCTGCAGGTCCCACTACCACAACCCTCGATCCGGCTGGAGCTTAGACATA
* * * *
27296358 GAATGAACTCCCTATGCCTAAGCCAACCCACGAATCGGGCGTGCGGGCGCTC-GTCGGTCGGAGA
1 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCGATCGGAGA
** ** * * * * *
27296422 GGTAGAATGCGTAAGCCGGGGATCGACTTGTTCCCCTCCCACGTGCTGTCGATCCTGCTGTCGCA
66 GACAGAATGCACAAGCCGGGGATCGACTCGGTCCCC-CCCACGTGCTATCGATCCTACTATCGCA
* * *
27296487 ACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAAT
130 ACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCATATGCATAAGTCAACCCACGAAAC
* * * * * *
27296552 GAGCGTATGGGCACTAAG-CTGACCGGAGAGGCATAATGCGCAAGCCAAGGACCGGCCTGATCCC
195 GAGCATACGAGCACTAAGCCAG-CCGAAGAGGCATAATGCGCAAGCCAAGGACCGACCTGATCCC
*
27296616 CCTTTGCGTGCTGCAGGTCCCACTACCACAACCCTCGATCCGGCTGGAGCTTAGACATA
259 CCTCTGCGTGCTGCAGGTCCCACTACCACAACCCTCGATCCGGCTGGAGCTTAGACATA
* * ** *
27296675 GAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGTTTGCTGGCACTCAGCCGATCGGAGA
1 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCGATCGGAGA
* * *
27296740 GACAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTACGTGCTATCGATCCTACTATCGTAA
66 GACAGAATGCACAAGCCGGGGATCGACTCGGTCCCCCCCACGTGCTATCGATCCTACTATCGCAA
* * *
27296805 CCCTCGGTCCGATCTGATCTTAGACTGGGAATTAACTCC
131 CCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCC
27296844 GTATCCTTAG
Statistics
Matches: 402, Mismatches: 79, Indels: 11
0.82 0.16 0.02
Matches are distributed among these distances:
316 2 0.00
317 318 0.79
318 82 0.20
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (317 bp):
GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCGATCGGAGA
GACAGAATGCACAAGCCGGGGATCGACTCGGTCCCCCCCACGTGCTATCGATCCTACTATCGCAA
CCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTCCATATGCATAAGTCAACCCACGAAACG
AGCATACGAGCACTAAGCCAGCCGAAGAGGCATAATGCGCAAGCCAAGGACCGACCTGATCCCCC
TCTGCGTGCTGCAGGTCCCACTACCACAACCCTCGATCCGGCTGGAGCTTAGACATA
Found at i:27296775 original size:159 final size:157
Alignment explanation
Indices: 27295848--27296785 Score: 513
Period size: 159 Copynumber: 5.9 Consensus size: 157
27295838 GTTCTACTGT
** * * * * *
27295848 CACAACCCTCGATCCGATTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACG
1 CACAACCCTCGATCCGGCTGGAGCTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCATG
* * * * * * *
27295913 AAACGAGCGTAAG-GGCGCTCAACCAATCGGAGAGGCAGAATGCGCGAGCTGGGGATCGACCCGA
66 AAACG-G-GTATGCGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGA
* * *
27295977 T-CCCCTCCTGCGTGCTGTCGATCCTGCTAC
129 TCCCCCT-CTGCGTGCTG-CGGTCCCGCTGC
* * ** ** * ** * *
27296007 CACAACCCTC-AGTCTGG-TCCGATATTAG-TTTGGGAATGAACTCCGCATCCCTAAGTCAACCC
1 CACAACCCTCGA-TCCGGCT-GGAGCTTAGACAT-AGAATGAACTCCATATGCCTAAGCCAACCC
* * * * * * * * * * *
27296069 ATGAAATGAGCATGCGGGCATTGAGCCGGTCGGGGAGGCATAATGCGCAAGCCGAGGATCAACCC
63 ATGAAACGGGTATGC-GGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTC
* * *** *** **
27296134 GGTCCCCTTCTGCGTGCTGTCAAACCTTTTAT
127 GATCCCCCTCTGCGTGCTG-CGGTCCCGCTGC
* * * * ** * *
27296166 CGCAACCCTC-AGTCCGATCT-GATCTTAGA-TTAGGAATGAACTCTGTATGCATAAGTCAACCC
1 CACAACCCTCGA-TCCG-GCTGGAGCTTAGACATA-GAATGAACTCCATATGCCTAAGCCAACCC
* * * * * * * * * * * *
27296228 ACGAAACGAGCATACGATCACTGAGCC-AGCCGAAGAGGCATAATGTGCAAGTCGAGGATCGACT
63 ATGAAACGGGTATGCG-GCACTCAGCCGA-TCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACT
*
27296292 CGATCCCCCTCTGCGTGTTGCCGGTCCCGCTGC
126 CGATCCCCCTCTGCGTGCTG-CGGTCCCGCTGC
* * * * * *
27296325 CATAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 CACAACCCTCGATCCGGCTGGAGCTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCATG
* ** * * * * * *
27296390 AATCGGGCGTGCGGGCGCTC-GTCGGTCGGAGAGGTAGAATGCGTAAGCCGGGGATCGACTTG-T
66 AAACGGGTATGC-GGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGAT
* ** * * *
27296453 TCCCCTCCCACGTGCTGTCGATCCTGCTGT
130 CCCCCT-CTGCGTGCTG-CGGTCCCGCTGC
* * * *
27296483 CGCAACCCTCGATCCGATCT-GATCTTAGAC-TAGGAATGAACTCCATATGCCTAAGTCAACCCA
1 CACAACCCTCGATCCG-GCTGGAGCTTAGACATA-GAATGAACTCCATATGCCTAAGCCAACCCA
* * * * * ** * *
27296546 TGAAATGAGCGTATG-GGCACTAAGCTGACCGGAGAGGCATAATGCGCAAGCCAAGGACCGGC-C
64 TGAAACG-G-GTATGCGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTC
* * *
27296609 TGATCCCCCTTTGCGTGCTGCAGGTCCCACTAC
127 -GATCCCCCTCTGCGTGCTGC-GGTCCCGCTGC
*
27296642 CACAACCCTCGATCCGGCTGGAGCTTAGACATAGAATGAACTCCTTATGCCTAAGCCAACCCATG
1 CACAACCCTCGATCCGGCTGGAGCTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCATG
* * * * *
27296707 AAACGGGTTTGCTGGCACTCAGCCGATCGGAGAGACAGAATGCACAAGCCGGGGATCGGCTCGGT
66 AAACGGGTATGC-GGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGAT
*
27296772 CCCCC-CTACGTGCT
130 CCCCCTCTGCGTGCT
27296786 ATCGATCCTA
Statistics
Matches: 584, Mismatches: 164, Indels: 63
0.72 0.20 0.08
Matches are distributed among these distances:
157 14 0.02
158 121 0.21
159 430 0.74
160 18 0.03
161 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CACAACCCTCGATCCGGCTGGAGCTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCATG
AAACGGGTATGCGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATC
CCCCTCTGCGTGCTGCGGTCCCGCTGC
Found at i:27296852 original size:26 final size:26
Alignment explanation
Indices: 27296823--27296873 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
27296813 CCGATCTGAT
* * *
27296823 CTTAGACTGGGAATTAACTCCGTATC
1 CTTAGACAGGGAATGAACTACGTATC
*
27296849 CTTAGACAGGGGATGAACTACGTAT
1 CTTAGACAGGGAATGAACTACGTAT
27296874 GCCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTACGTATC
Found at i:27298092 original size:158 final size:158
Alignment explanation
Indices: 27297555--27298133 Score: 556
Period size: 159 Copynumber: 3.7 Consensus size: 158
27297545 ATGGCTCAAA
* * **
27297555 ATCTTAGACTAGGAATGAACTCCATATGCCTGAGCCAACCCACGAAATAAGCGTGCA-GGCGCTC
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTG-ATGGCGCTC
* * *
27297619 AGCCGGTCGGAGAGGCAGAATGCGCAAGTCGAGGATCGGCCCGGTCCCCCCCTGCGTGCTGTCGA
65 AGCCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGT-CCCCCCTGCGTGCTGTCGA
* * * * *
27297684 ACCTTCTGTCGTAACCCTCAGTCCGATCTG
129 TCCTACTGCCGTAACCCTCAGTCTGGTCTG
* ** * * * *
27297714 ATCTTAGATTAGGAATGAACTTTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGAT--CGTT
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT--GATGGCGCT
* * * * * * * * *
27297777 GAGCCGGTCGAAGAGGCATAATGCATAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGTTGCCG
64 CAGCCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGTCCCCC-CTGCGTGCTGTCG
* ** ** *
27297842 GTCCCGCTGCCACAACCCTCGGTCTGG-CTGG
128 ATCCTACTGCCGTAACCCTCAGTCTGGTCT-G
** * * * * * **
27297873 GGCTTAGAC-ATGGAATGACCTCCCTATGCCTAAGCCAACCCATGAATCGGGCGTGCGGGCGCTC
1 ATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGATGGCGCTC
* * *
27297937 AGTCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGTCGAT
65 AGCCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGAT
*
27298002 CCTACTACCGTAACCCTCAGTCTGGTCTG
130 CCTACTGCCGTAACCCTCAGTCTGGTCTG
* * *
27298031 ATCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGATGGCGCTCA
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGATGGCGCTCA
* ** * * *
27298096 GCTGACCAGAGAGGCAGGATGCATAAGCCGAGGATCGA
66 GCCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGA
27298134 ACGGGTGGTA
Statistics
Matches: 328, Mismatches: 82, Indels: 21
0.76 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 121 0.37
159 204 0.62
160 1 0.00
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGATGGCGCTCA
GCCGGTCGGAGAGGCAGAATGCACAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
CTACTGCCGTAACCCTCAGTCTGGTCTG
Found at i:27299109 original size:26 final size:26
Alignment explanation
Indices: 27299080--27299146 Score: 116
Period size: 26 Copynumber: 2.6 Consensus size: 26
27299070 TAGATCGAGA
*
27299080 ATGAACTCTGTATGCTTAGACTGGGG
1 ATGAACTCCGTATGCTTAGACTGGGG
*
27299106 ATGAACTCCGTATGCTTAGATTGGGG
1 ATGAACTCCGTATGCTTAGACTGGGG
27299132 ATGAACTCCGTATGC
1 ATGAACTCCGTATGC
27299147 CTAAGTCAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (26 bp):
ATGAACTCCGTATGCTTAGACTGGGG
Found at i:27299642 original size:26 final size:26
Alignment explanation
Indices: 27299613--27299662 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
27299603 CCGATCCGAT
*
27299613 CTTAGACTAGGAATGAAGTCCGTACG
1 CTTAGACTAGGAATGAACTCCGTACG
*
27299639 CTTAGACTAGGGATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
27299663 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTACG
Found at i:27299992 original size:26 final size:26
Alignment explanation
Indices: 27299956--27300008 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27299946 CCGATCTGAT
* *
27299956 CTTAGACTGGGAATGAAGTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27299982 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27300008 C
1 C
27300009 CTAAGCCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27300038 original size:343 final size:344
Alignment explanation
Indices: 27299476--27300236 Score: 996
Period size: 341 Copynumber: 2.2 Consensus size: 344
27299466 ACTCCCTATT
* * * * * * * * * *
27299476 CCTAAGCCAACACATGAAACGGGCATGCGGGCGCTCAGCCGGTCGGAAAGGCTGAATGCGTAAGT
1 CCTAAGTCAACCCATGAAACGAGCATGTGGGCACTCAACCGGTCGGAGAGGCAGAATGCGCAAGC
* * *
27299541 CGAGGATTGGCCCGATCCCTCCTGCGTGCTATCGATCCTGCTACCGTAACCCTCGATCCGATCCG
66 CGAGGATCGACACGATCCCTCCTGCGTGCTATCGATCCTGCTACCGTAACCCTCGATCCGATCC-
27299606 ATCCGATCTTAGACTAGGAATGAAGTCCGTACGCTTAGACTAGGGATGAACTCCGTATGCCTAAG
130 AT-CGATCTTAGACTAGGAATGAAGTCCGTACGCTTAGACTAGGGATGAACTCCGTATGCCTAAG
* * *
27299671 CCAACCCGCGAAATGAGCGTGCCAGCTCTCAGTCGACCGAAGAGGCAGAATACGTAAGCTGGGG-
194 CCAACCCACGAAATGAGCGTGCCAGCTCTCAGCCGACCG-AGAGGCAGAATACGTAAGCGGGGGA
* * * **
27299735 CCAACCCAGTCCCCCCCCTACGTGCTATCGATCCTGTTGTTGCAACCCTCAGTCTGGTCTGATCT
258 CCAACCCAG-ACCCACCCTA-GTGCTATCGATCCTGTTGCTGCAACCCTCAGTCCAGTCTGATCT
*
27299800 TAGATTGGGAATGAACTTT-GTATG
321 TAGACTGGGAATGAA-TTTCGTATG
* *
27299824 CCTAAGTCAACCCATGAAACGAGCGTGTGGGCACTCAACCGGTTGGAGAGGCAGAATGCGCAAGC
1 CCTAAGTCAACCCATGAAACGAGCATGTGGGCACTCAACCGGTCGGAGAGGCAGAATGCGCAAGC
* * * * *
27299889 C-AGGGATCGACACGGTCCCTCCTGCGTGCTGTTGATGCTGCTATCGTAACCCTCGATCCGAT-C
66 CGA-GGATCGACACGATCCCTCCTGCGTGCTATCGATCCTGCTACCGTAACCCTCGATCCGATCC
* * * *
27299952 -T-GATCTTAGACTGGGAATGAAGTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGC
130 ATCGATCTTAGACTAGGAATGAAGTCCGTACGCTTAGACTAGGGATGAACTCCGTATGCCTAAGC
* *
27300015 CAATCCACGAAATGAGCGTGCCAGCTCTCAGCCGACCGAGAGGCAGAATGCGTAAGCGGGGGACC
195 CAACCCACGAAATGAGCGTGCCAGCTCTCAGCCGACCGAGAGGCAGAATACGTAAGCGGGGGACC
* * * *
27300080 GACCCAGACCCACGCTAGTGCTGTCGATCGTGTTGCTGCAACCCTCAGTCCAGTCTGATCTTAGA
260 AACCCAGACCCACCCTAGTGCTATCGATCCTGTTGCTGCAACCCTCAGTCCAGTCTGATCTTAGA
27300145 CTGGGAATGAATTTCGTATG
325 CTGGGAATGAATTTCGTATG
* * * * *
27300165 CCTAAGTCAACCCATGAAACGAGCAT-TCAGGCACTCACCCGATCGGAGAGGCATAATGCACAAG
1 CCTAAGTCAACCCATGAAACGAGCATGT-GGGCACTCAACCGGTCGGAGAGGCAGAATGCGCAAG
*
27300229 CTGAGGAT
65 CCGAGGAT
27300237 TGACCCCGTC
Statistics
Matches: 361, Mismatches: 47, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
340 4 0.01
341 118 0.33
342 30 0.08
343 101 0.28
345 1 0.00
347 2 0.01
348 105 0.29
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (344 bp):
CCTAAGTCAACCCATGAAACGAGCATGTGGGCACTCAACCGGTCGGAGAGGCAGAATGCGCAAGC
CGAGGATCGACACGATCCCTCCTGCGTGCTATCGATCCTGCTACCGTAACCCTCGATCCGATCCA
TCGATCTTAGACTAGGAATGAAGTCCGTACGCTTAGACTAGGGATGAACTCCGTATGCCTAAGCC
AACCCACGAAATGAGCGTGCCAGCTCTCAGCCGACCGAGAGGCAGAATACGTAAGCGGGGGACCA
ACCCAGACCCACCCTAGTGCTATCGATCCTGTTGCTGCAACCCTCAGTCCAGTCTGATCTTAGAC
TGGGAATGAATTTCGTATG
Found at i:27300561 original size:170 final size:170
Alignment explanation
Indices: 27300274--27300624 Score: 458
Period size: 170 Copynumber: 2.1 Consensus size: 170
27300264 GGTGCCGCTG
*
27300274 CCACAACCCTCGGTCAGGCTAGGGCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCAGTCAGGCTAGGGCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * *
27300339 GAAACGGGCATGCGGATGCTCAGTCAGCCGGAGAGGCAGAATGAGTAAGTCGGGGATCAGCCCGA
66 GAAACGAGCATGCGGACGCTCAGCCAGCCGGAGAGGCAGAATGAGCAAGTCGGGGATCAGCCCGA
* * *
27300404 TCCCTCCTGCGTGCTATCGAT-CTGGTTG-TCAGTCCTGCTA
131 TCCCCCCTACGTGCTATCGATCCT-GCTGCT-AGTCCTGCTA
* * *
27300444 CCACAACCCTCAGTCTGGCTGGGGCTTAGACAT-GCAATGAACTCCGTATGCCTAAGCCAACCCA
1 CCACAACCCTCAGTCAGGCTAGGGCTTAGACATCG-AATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * *
27300508 CGAAACGAGCGTGTGGGCGCTCAGCCAGTCGGAGAGGTAGAATGCA-CAAGTCGGGGATCGGCCC
65 CGAAACGAGCATGCGGACGCTCAGCCAGCCGGAGAGGCAGAATG-AGCAAGTCGGGGATCAGCCC
* * *
27300572 GGTCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTGCTA
129 GATCCCCCCTACGTGCTATCGATCCTGCTGCTAGTCCTGCTA
27300614 CCACAACCCTC
1 CCACAACCCTC
27300625 GGTCCGATCT
Statistics
Matches: 157, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
169 1 0.01
170 152 0.97
171 4 0.03
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (170 bp):
CCACAACCCTCAGTCAGGCTAGGGCTTAGACATCGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAACGAGCATGCGGACGCTCAGCCAGCCGGAGAGGCAGAATGAGCAAGTCGGGGATCAGCCCGA
TCCCCCCTACGTGCTATCGATCCTGCTGCTAGTCCTGCTA
Found at i:27300644 original size:170 final size:170
Alignment explanation
Indices: 27300274--27300664 Score: 445
Period size: 170 Copynumber: 2.3 Consensus size: 170
27300264 GGTGCCGCTG
* *
27300274 CCACAACCCTCGGTCAGGCTAGG-GCTTAGACAT-CGAATGAACTCCCTATGCCTAAGCCAACCC
1 CCACAACCCTCAGTCCGGCT-GGAGCTTAGACATGC-AATGAACTCCCTATGCCTAAGCCAACCC
* * * *
27300337 ACGAAACGGGCATGCGGATGCTCAGTCAGCCGGAGAGGCAGAATGAGTAAGTCGGGGATCAGCCC
64 ACGAAACGAGCATGCGGACGCTCAGCCAGCCGGAGAGGCAGAATGAGCAAGTCGGGGATCAGCCC
* * *
27300402 GATCCCTCCTGCGTGCTATCGATCTGGTTGTCAGTCCTGCTA
129 GATCCCCCCTACGTGCTATCGATCTGGCTGTCAGTCCTGCTA
* * *
27300444 CCACAACCCTCAGTCTGGCTGGGGCTTAGACATGCAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CCACAACCCTCAGTCCGGCTGGAGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * *
27300509 GAAACGAGCGTGTGGGCGCTCAGCCAGTCGGAGAGGTAGAATGCA-CAAGTCGGGGATCGGCCCG
66 GAAACGAGCATGCGGACGCTCAGCCAGCCGGAGAGGCAGAATG-AGCAAGTCGGGGATCAGCCCG
* * *
27300573 GTCCCCCCTACGTGCTGTCGATCCT-GCTG-CTGGTCCTGCTA
130 ATCCCCCCTACGTGCTATCGAT-CTGGCTGTC-AGTCCTGCTA
* * * *
27300614 CCACAACCCTCGGTCCGATCT-GATCTTAGAC-TGGGAATGAACTCCCTATGC
1 CCACAACCCTCAGTCCG-GCTGGAGCTTAGACAT-GCAATGAACTCCCTATGC
27300665 TCAGACATGG
Statistics
Matches: 188, Mismatches: 26, Indels: 14
0.82 0.11 0.06
Matches are distributed among these distances:
169 4 0.02
170 178 0.95
171 6 0.03
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (170 bp):
CCACAACCCTCAGTCCGGCTGGAGCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAACGAGCATGCGGACGCTCAGCCAGCCGGAGAGGCAGAATGAGCAAGTCGGGGATCAGCCCGA
TCCCCCCTACGTGCTATCGATCTGGCTGTCAGTCCTGCTA
Found at i:27301017 original size:26 final size:26
Alignment explanation
Indices: 27300981--27301033 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27300971 CCGGTCCGAT
27300981 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
27301007 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27301033 C
1 C
27301034 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27301536 original size:159 final size:165
Alignment explanation
Indices: 27301360--27301801 Score: 474
Period size: 169 Copynumber: 2.7 Consensus size: 165
27301350 CTTAGACTGG
* * * * * * *
27301360 GAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATTCGGGCACTCACCCAGTCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGA
*
27301425 GGCATAATGCACAAG-CTGAGGATTGACCCGGTCCCACTCTGCGTG-T-T-A-CT-G-GT-G-CC
66 GGCAGAATGCACAAGTC-G-GGATTGACCCGGTCCCAC-CTGCGTGCTGTCATCTAGTGTAGTCC
*
27301481 -GCTGCCACAACCCTCGGTCAGGCTAGGGCTTAAACAT
128 TGCTGCCACAACCCTCAGTCAGGCTAGGGCTTAAACAT
* * ** * * *
27301518 CGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGATGCTCAGTCAGCCGAAG
1 -GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAG
** * * *
27301583 AGGCAGAATGCGTAAGTCGGGA-TCAGCCCGATCCCTCCTGCGTGCTGTCGATCTAGTTGTCAGT
65 AGGCAGAATGCACAAGTCGGGATTGA-CCCGGTCCCACCTGCGTGCTGTC-ATCTAG-TGT-AGT
* * *
27301647 CCTGCTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACAT
126 CCTGCTGCCACAACCCTCAGTCAGGCTAGGGCTTAAACAT
27301687 GCAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAG
1 G-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAG
* * *
27301752 AGGCAGAATGCACAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTGTC
65 AGGCAGAATGCACAAGTC-GGGATTGACCCGGTCCCACCTGCGTGCTGTC
27301802 GATCCTGCTG
Statistics
Matches: 228, Mismatches: 38, Indels: 23
0.79 0.13 0.08
Matches are distributed among these distances:
157 9 0.04
158 13 0.06
159 65 0.29
160 1 0.00
161 1 0.00
162 2 0.01
163 1 0.00
165 2 0.01
167 1 0.00
168 3 0.01
169 105 0.46
170 24 0.11
171 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (165 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGA
GGCAGAATGCACAAGTCGGGATTGACCCGGTCCCACCTGCGTGCTGTCATCTAGTGTAGTCCTGC
TGCCACAACCCTCAGTCAGGCTAGGGCTTAAACAT
Found at i:27302227 original size:26 final size:26
Alignment explanation
Indices: 27302191--27302243 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27302181 CCGATCCGAT
27302191 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
27302217 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27302243 C
1 C
27302244 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27302733 original size:159 final size:165
Alignment explanation
Indices: 27302570--27303011 Score: 474
Period size: 169 Copynumber: 2.7 Consensus size: 165
27302560 CTTAGACTGG
* * * * * * *
27302570 GAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATTCGGGCACTCACCCAGTCGGAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGA
*
27302635 GGCATAATGCACAAG-CTGAGGATTGACCCGGTCCCACTCTGCGTG-T-T-A-CT-G-GT-G-CC
66 GGCAGAATGCACAAGTC-G-GGATTGACCCGGTCCCAC-CTGCGTGCTGTCATCTAGTGTAGTCC
*
27302691 -GCTGCCACAACCCTCGGTCAGGCTAGGGCTTAAACAT
128 TGCTGCCACAACCCTCAGTCAGGCTAGGGCTTAAACAT
* * ** * * *
27302728 CGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGATGCTCAGTCAGCCGAAG
1 -GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAG
** * * *
27302793 AGGCAGAATGCGTAAGTCGGGA-TCAGCCCGATCCCTCCTGCGTGCTGTCGATCTAGTTGTCAGT
65 AGGCAGAATGCACAAGTCGGGATTGA-CCCGGTCCCACCTGCGTGCTGTC-ATCTAG-TGT-AGT
* * *
27302857 CCTGCTGCCACAACCCTCAGTCTGGCTGGGGCTTAGACAT
126 CCTGCTGCCACAACCCTCAGTCAGGCTAGGGCTTAAACAT
27302897 GCAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAG
1 G-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAG
* * *
27302962 AGGCAGAATGCACAAGTCGGGGATCGACCCGGTCCCCCCTACGTGCTGTC
65 AGGCAGAATGCACAAGTC-GGGATTGACCCGGTCCCACCTGCGTGCTGTC
27303012 GATCCTGCTG
Statistics
Matches: 228, Mismatches: 38, Indels: 23
0.79 0.13 0.08
Matches are distributed among these distances:
157 9 0.04
158 13 0.06
159 65 0.29
160 1 0.00
161 1 0.00
162 2 0.01
163 1 0.00
165 2 0.01
167 1 0.00
168 3 0.01
169 105 0.46
170 24 0.11
171 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (165 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGA
GGCAGAATGCACAAGTCGGGATTGACCCGGTCCCACCTGCGTGCTGTCATCTAGTGTAGTCCTGC
TGCCACAACCCTCAGTCAGGCTAGGGCTTAAACAT
Found at i:27303437 original size:26 final size:26
Alignment explanation
Indices: 27303401--27303453 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27303391 CCGGTCCGAT
27303401 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
27303427 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27303453 C
1 C
27303454 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27304024 original size:159 final size:159
Alignment explanation
Indices: 27303571--27304026 Score: 454
Period size: 159 Copynumber: 2.9 Consensus size: 159
27303561 TGTCGATCTC
* * *
27303571 GCTGCC-AGTCCTGCTACCACAACCCTCGGTCCGGCTGGGACTTAGACATGGAATTAACTTTGTA
1 GCTGCCGA-TCCTGCTGCCACAACCCTCGGTCCGGCTGGGACTTAGACATGGAATGAACTTCGTA
* *
27303635 TGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGTAAAATGTGCAA
65 TGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAAAATGTGCAA
** * * *
27303700 GCTAGGGACTGGCCCGGTCCCTCCCTGTGT
130 GCCGGGGATTGACCCGGTCCCTCCCTGCGT
* ** *** * * *
27303730 GCTGTCGATCCTATTGTTGCAACCTTCGATCTGGTCT--GATCTTAGAC-TGGGAATGAACTTCG
1 GCTGCCGATCCTGCTGCCACAACCCTCGGTCCGG-CTGGGA-CTTAGACAT-GGAATGAACTTCG
* ** * ** * * * *
27303792 TATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCAC-CGAGCCGATCGAAGAGGCATAATGCG
63 TATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTC-AGCCGACCGGAGAGGCAAAATGTG
* ** * *
27303856 TAATTCGGGGATTGACTCGGTCCCTCTCTGCGT
127 CAAGCCGGGGATTGACCCGGTCCCTCCCTGCGT
* * *
27303889 GCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGCTGGGACTTAGACATGGAATGAACTTCGTAT
* * * * *
27303954 GCCTAAGCCAACCCACAAAATGGGTGTGCGGGTGCTCAGTCGACCGGAGAGGCAGAATGTGCAAG
66 GCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAAAATGTGCAAG
27304019 CCGGGGAT
131 CCGGGGAT
27304027 CAGTCCGGTC
Statistics
Matches: 225, Mismatches: 63, Indels: 18
0.74 0.21 0.06
Matches are distributed among these distances:
158 6 0.03
159 213 0.95
160 6 0.03
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (159 bp):
GCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGCTGGGACTTAGACATGGAATGAACTTCGTAT
GCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCAAAATGTGCAAG
CCGGGGATTGACCCGGTCCCTCCCTGCGT
Found at i:27304116 original size:26 final size:26
Alignment explanation
Indices: 27304087--27304139 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27304077 CCAATCCGAT
27304087 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27304113 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27304139 C
1 C
27304140 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27304974 original size:26 final size:26
Alignment explanation
Indices: 27304945--27304997 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27304935 CCGATCCAAT
27304945 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
27304971 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27304997 C
1 C
27304998 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27305887 original size:159 final size:158
Alignment explanation
Indices: 27305515--27305905 Score: 448
Period size: 158 Copynumber: 2.5 Consensus size: 158
27305505 ACCGGTCCTG
* *
27305515 CTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
1 CTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACC
* * * * *
27305580 CACGAATCGAGCGTGTGGGCGGTTAGCCGGTCGGAGAGGCAGAATGCGCAAGCTAGGATCGACCT
66 CACGAAACGAGCGTGTAGGCGGTTAGCCGGTCGGAGAGGCAGAATGCACAAGCGAGGATCGACCC
* * * *
27305645 GGTCCCCCCCTGTATGCTGTCGATCCTA
131 GATCCCCCCCTATATGCTGCCGATCCCA
* ** * *
27305673 CTACCACAACCCTCGGTCT-GCTCTGATCTTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAA
1 CTACCACAACCCTCGGTCTGGCT-GGGGCTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAA
* ** * * *
27305736 CCCACGAAACGAGCGTGTAGGC-GTTGTGTTGGTCGGAGAGGCATAATGCACGAGCCGGGGATCG
64 CCCACGAAACGAGCGTGTAGGCGGTT-AGCCGGTCGGAGAGGCAGAATGCACAAG-CGAGGATCG
* * *
27305800 GCCCGATCCCCCTCTATGTGCTGCC-AGTCCCA
127 ACCCGATCCCCCCCTATATGCTGCCGA-TCCCA
* * *
27305832 CTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACC
1 CTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACC
*
27305897 CATGAAACG
66 CACGAAACG
27305906 GGTGTGCGGG
Statistics
Matches: 193, Mismatches: 33, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
157 7 0.04
158 93 0.48
159 89 0.46
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACC
CACGAAACGAGCGTGTAGGCGGTTAGCCGGTCGGAGAGGCAGAATGCACAAGCGAGGATCGACCC
GATCCCCCCCTATATGCTGCCGATCCCA
Found at i:27305933 original size:159 final size:158
Alignment explanation
Indices: 27305515--27305972 Score: 474
Period size: 159 Copynumber: 2.9 Consensus size: 158
27305505 ACCGGTCCTG
* *
27305515 CTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
1 CTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACC
* * * * ** *
27305580 CACGAATCGAGCGTGTGGGCGGTTAGCCGGTCGGAGAGGCAGAATGCGCAAG-CTAGGATCGACC
66 CACGAAACGAGCGTGTGGGCGCTCAG-CTGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
* * * * * *
27305644 TGGTCCCCCCCTGTATGCTGTCGATCCTA
130 CGATCCCCCTCTATATGCTGCCGATCCCA
* ** * *
27305673 CTACCACAACCCTCGGTCT-GCTCTGATCTTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAA
1 CTACCACAACCCTCGGTCTGGCT-GGGGCTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAA
* * ** * * * *
27305736 CCCACGAAACGAGCGTGTAGGCGTTGTGTTGGTCGGAGAGGCATAATGCACGAGCCGGGGATCGG
64 CCCACGAAACGAGCGTGTGGGCGCTCAGCT-GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG
*
27305801 CCCGATCCCCCTCTATGTGCTGCC-AGTCCCA
128 CCCGATCCCCCTCTATATGCTGCCGA-TCCCA
* * *
27305832 CTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACC
1 CTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACC
* * * * * * *
27305897 CATGAAACGGGTGTGCGGGTGCTCAGACTGTTGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCC
66 CACGAAACGAGCGTGTGGGCGCTCAG-CTGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
27305962 CGATCCTCCCT
130 CGATCC-CCCT
27305973 GCGTGCTATC
Statistics
Matches: 242, Mismatches: 49, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.02
158 94 0.39
159 135 0.56
160 9 0.04
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACC
CACGAAACGAGCGTGTGGGCGCTCAGCTGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC
GATCCCCCTCTATATGCTGCCGATCCCA
Found at i:27307065 original size:158 final size:158
Alignment explanation
Indices: 27306777--27307067 Score: 361
Period size: 158 Copynumber: 1.8 Consensus size: 158
27306767 TTAGACATGT
* * * *
27306777 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGCGCTCAGCCGGTCGGAGAGG
1 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGCCGGTCGGAAAGG
* * * * ** * *
27306842 TAGAATGCGAAAGCCGGGGATCGGCACGATCCCCCTCTGCGTGCTGTCGGTCCTGTTGCCACAAC
66 CAGAATCCGAAAGCCGGGGATCGACACGATCCCCCTCTGCGTGCTGCCAATCCTGCTACCACAAC
27306907 CCTCGGTCTAGTTGGGGCTTTGATATGG
131 CCTCGGTCTAGTTGGGGCTTTGATATGG
* * *
27306935 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCGCTCAGCTGG-CTGGAAA
1 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GCGCTCAGCCGGTC-GGAAA
* * * * * *
27306999 GGCAGTATCCGCAATCTGGGGATTGACTCGATCCCCC-CTGCGTGCTGCCAATCCTGCTACCACA
64 GGCAGAATCCGAAAGCCGGGGATCGACACGATCCCCCTCTGCGTGCTGCCAATCCTGCTACCACA
27307063 ACCCT
129 ACCCT
27307068 TGATCCAGTT
Statistics
Matches: 110, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
158 67 0.61
159 43 0.39
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (158 bp):
AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGCCGGTCGGAAAGG
CAGAATCCGAAAGCCGGGGATCGACACGATCCCCCTCTGCGTGCTGCCAATCCTGCTACCACAAC
CCTCGGTCTAGTTGGGGCTTTGATATGG
Found at i:27307543 original size:159 final size:158
Alignment explanation
Indices: 27307272--27307794 Score: 500
Period size: 159 Copynumber: 3.3 Consensus size: 158
27307262 CCGCTACCAT
** * * * *
27307272 AACCCTCGGTTTGGTCCAATCTTAGAATAGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAA
* * * * *
27307337 CGAGCGTGTGGGTGCTCAGCCGGCTGGAGAGGCAGAATGCACAAGCCGAGGACCGACCCAGTCCC
65 CGAGCGTGTAGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCAGTCCC
*
27307402 CCCATGCGTGCTGTCAATCCTGCTGCCGC
130 CTCATGCGTGCTGTCAATCCTGCTGCCGC
*
27307431 AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAA
* * * * * * ** *
27307496 TGAGCGTATAGGCGCTGAGCCAGCCGGAGAGGTATAATGCGTGAGCCGAGGATCGACCCAATCCC
65 CGAGCGTGTAGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCAGTCCC
* * ** ** * *
27307561 TCTC-TGTGTGTTACCGGTCCCGCTGCCAC
130 -CTCATGCGTGCTGTCAATCCTGCTGCCGC
* * **** *
27307590 AACCTTCGGTCTGA-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCTAACCCATGA
1 AACCCTCGGTCCGATC-CAATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGC-AACCCATGA
* * * * *
27307653 AACGGGTGTGTAGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATTGGCCC-GAT
63 AACGAGCGTGTAGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCAG-T
* * *
27307717 -CCCTCATACGGGCTGTCGAA-CCTACTGCCGC
127 CCCCTCATGCGTGCTGTC-AATCCTGCTGCCGC
* * *
27307748 AACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGC
1 AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGC
27307795 TTAGACTAGG
Statistics
Matches: 283, Mismatches: 72, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.01
158 52 0.18
159 224 0.79
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAACCCATGAAAC
GAGCGTGTAGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGATCGACCCAGTCCCC
TCATGCGTGCTGTCAATCCTGCTGCCGC
Found at i:27307806 original size:26 final size:26
Alignment explanation
Indices: 27307768--27307820 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27307758 CCGATCCGAT
* *
27307768 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27307794 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27307820 C
1 C
27307821 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27308711 original size:159 final size:158
Alignment explanation
Indices: 27308339--27308729 Score: 448
Period size: 158 Copynumber: 2.5 Consensus size: 158
27308329 ACCGGTCCTG
* *
27308339 CTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
1 CTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACC
* * * * *
27308404 CACGAATCGAGCGTGTGGGCGGTTAGCCGGTCGGAGAGGCAGAATGCGCAAGCTAGGATCGACCT
66 CACGAAACGAGCGTGTAGGCGGTTAGCCGGTCGGAGAGGCAGAATGCACAAGCGAGGATCGACCC
* * * *
27308469 GGTCCCCCCCTGTATGCTGTCGATCCTA
131 GATCCCCCCCTATATGCTGCCGATCCCA
* ** * *
27308497 CTACCACAACCCTCGGTCT-GCTCTGATCTTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAA
1 CTACCACAACCCTCGGTCTGGCT-GGGGCTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAA
* ** * * *
27308560 CCCACGAAACGAGCGTGTAGGC-GTTGTGTTGGTCGGAGAGGCATAATGCACGAGCCGGGGATCG
64 CCCACGAAACGAGCGTGTAGGCGGTT-AGCCGGTCGGAGAGGCAGAATGCACAAG-CGAGGATCG
* * *
27308624 GCCCGATCCCCCTCTATGTGCTGCC-AGTCCCA
127 ACCCGATCCCCCCCTATATGCTGCCGA-TCCCA
* * *
27308656 CTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACC
1 CTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACC
*
27308721 CATGAAACG
66 CACGAAACG
27308730 GGTGTGCGGG
Statistics
Matches: 193, Mismatches: 33, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
157 7 0.04
158 93 0.48
159 89 0.46
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACC
CACGAAACGAGCGTGTAGGCGGTTAGCCGGTCGGAGAGGCAGAATGCACAAGCGAGGATCGACCC
GATCCCCCCCTATATGCTGCCGATCCCA
Found at i:27308757 original size:159 final size:158
Alignment explanation
Indices: 27308339--27308796 Score: 474
Period size: 159 Copynumber: 2.9 Consensus size: 158
27308329 ACCGGTCCTG
* *
27308339 CTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
1 CTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACC
* * * * ** *
27308404 CACGAATCGAGCGTGTGGGCGGTTAGCCGGTCGGAGAGGCAGAATGCGCAAG-CTAGGATCGACC
66 CACGAAACGAGCGTGTGGGCGCTCAG-CTGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
* * * * * *
27308468 TGGTCCCCCCCTGTATGCTGTCGATCCTA
130 CGATCCCCCTCTATATGCTGCCGATCCCA
* ** * *
27308497 CTACCACAACCCTCGGTCT-GCTCTGATCTTAGAC-TAGGAATGAACTTCGTATGCCTAAGTCAA
1 CTACCACAACCCTCGGTCTGGCT-GGGGCTTAGACAT-GGAATGAACTCCATATGCCTAAGTCAA
* * ** * * * *
27308560 CCCACGAAACGAGCGTGTAGGCGTTGTGTTGGTCGGAGAGGCATAATGCACGAGCCGGGGATCGG
64 CCCACGAAACGAGCGTGTGGGCGCTCAGCT-GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGG
*
27308625 CCCGATCCCCCTCTATGTGCTGCC-AGTCCCA
128 CCCGATCCCCCTCTATATGCTGCCGA-TCCCA
* * *
27308656 CTGCCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACC
1 CTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACC
* * * * * * *
27308721 CATGAAACGGGTGTGCGGGTGCTCAGACTGTTGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCC
66 CACGAAACGAGCGTGTGGGCGCTCAG-CTGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCC
27308786 CGATCCTCCCT
130 CGATCC-CCCT
27308797 GCGTGCTATC
Statistics
Matches: 242, Mismatches: 49, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.02
158 94 0.39
159 135 0.56
160 9 0.04
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGTCAACC
CACGAAACGAGCGTGTGGGCGCTCAGCTGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCC
GATCCCCCTCTATATGCTGCCGATCCCA
Found at i:27309891 original size:158 final size:158
Alignment explanation
Indices: 27309603--27309893 Score: 361
Period size: 158 Copynumber: 1.8 Consensus size: 158
27309593 TTAGACATGT
* * * *
27309603 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGCGCTCAGCCGGTCGGAGAGG
1 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGCCGGTCGGAAAGG
* * * * ** * *
27309668 TAGAATGCGAAAGCCGGGGATCGGCACGATCCCCCTCTGCGTGCTGTCGGTCCTGTTGCCACAAC
66 CAGAATCCGAAAGCCGGGGATCGACACGATCCCCCTCTGCGTGCTGCCAATCCTGCTACCACAAC
27309733 CCTCGGTCTAGTTGGGGCTTTGATATGG
131 CCTCGGTCTAGTTGGGGCTTTGATATGG
* * *
27309761 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGAGCGCTCAGCTGG-CTGGAAA
1 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GCGCTCAGCCGGTC-GGAAA
* * * * * *
27309825 GGCAGTATCCGCAATCTGGGGATTGACTCGATCCCCC-CTGCGTGCTGCCAATCCTGCTACCACA
64 GGCAGAATCCGAAAGCCGGGGATCGACACGATCCCCCTCTGCGTGCTGCCAATCCTGCTACCACA
27309889 ACCCT
129 ACCCT
27309894 TGATCCAGTT
Statistics
Matches: 110, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
158 67 0.61
159 43 0.39
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (158 bp):
AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGCCGGTCGGAAAGG
CAGAATCCGAAAGCCGGGGATCGACACGATCCCCCTCTGCGTGCTGCCAATCCTGCTACCACAAC
CCTCGGTCTAGTTGGGGCTTTGATATGG
Done.