Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 286 of 402
Found at i:27310369 original size:159 final size:158
Alignment explanation
Indices: 27310098--27310620 Score: 509
Period size: 159 Copynumber: 3.3 Consensus size: 158
27310088 CCGCTACCAT
** * * * *
27310098 AACCCTCGGTTTGGTCCAATCTTAGAATAGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAA
* * * * * *
27310163 CGAGCGTGTGGGTGCTCAGCCGGCTGGAGAGGCAGAATGCACAAGCCGAGGACCGACCCAGTCCC
65 CGAGCGTGTAGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCAGTCCC
27310228 CCCATGCGTGCTGTCAATCCTGCTGCCGC
130 CCCATGCGTGCTGTCAATCCTGCTGCCGC
*
27310257 AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACCCATGAAA
* * * * * * ** *
27310322 TGAGCGTATAGGCGCTGAGCCAGCCGGAGAGGTATAATGCGTGAGCCGGGGATCGACCCAATCCC
65 CGAGCGTGTAGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCAGTCCC
* * * ** * *
27310387 CCTC-TGTGTGTTGCCGGTCCCGCTGCCAC
130 CC-CATGCGTGCTGTCAATCCTGCTGCCGC
* * **** *
27310416 AACCTTCGGTCTGA-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCTAACCCATGA
1 AACCCTCGGTCCGATC-CAATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGC-AACCCATGA
* * * *
27310479 AACGGGTGTGTAGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATTGGCCC-GAT
63 AACGAGCGTGTAGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCAG-T
* * * *
27310543 -CCCTCATACGGGCTGTCGAA-CCTACTGCCGC
127 CCCCCCATGCGTGCTGTC-AATCCTGCTGCCGC
* * *
27310574 AACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGC
1 AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGC
27310621 TTAGACTAGG
Statistics
Matches: 285, Mismatches: 70, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
157 2 0.01
158 54 0.19
159 227 0.80
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
AACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAACCCATGAAAC
GAGCGTGTAGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCAGTCCCC
CCATGCGTGCTGTCAATCCTGCTGCCGC
Found at i:27310632 original size:26 final size:26
Alignment explanation
Indices: 27310594--27310646 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27310584 CCGATCCGAT
* *
27310594 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27310620 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27310646 C
1 C
27310647 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27311696 original size:26 final size:26
Alignment explanation
Indices: 27311660--27311712 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27311650 CTGATTCTAT
27311660 CTTAGACTGGGAAGGAACCCCGTATG
1 CTTAGACTGGGAAGGAACCCCGTATG
* * *
27311686 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACCCCGTATG
27311712 C
1 C
27311713 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACCCCGTATG
Found at i:27312076 original size:26 final size:26
Alignment explanation
Indices: 27312038--27312090 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27312028 CCAGTCTGAT
27312038 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27312064 CTTAGACAT-GGAATGAACTCCTTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27312090 C
1 C
27312091 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27312563 original size:158 final size:156
Alignment explanation
Indices: 27312064--27312563 Score: 405
Period size: 158 Copynumber: 3.2 Consensus size: 156
27312054 ACTCCGTATG
* * *
27312064 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
** ** * * * ** * * *
27312129 CGGGCGGAGAGGCAAAATGCGTAAGCTGGAGACGGCCCGAACCCCCTTGCGTGCTGTCGATTCTA
66 CGACCGGAGAGGCAAAATGCACAAGCTGGGGATGGCACGGTCCCCCCTGCGTGCTGTCGATCCTG
** * *
27312194 CTATCGTAATGCTT-GTTCCAGTCTGAT
131 CTGCCGTAA--CTTCGGTCCAGTTTGAT
** * ** * * * * * * *
27312221 CTTAGAC-TGGAATGAACTCCGCATGCCTTATTCAACCCACGAAATGAGCATTCAGGCACTAAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * *
27312285 CGACCGGAGAGGCATAGTACACAAGCTGGGGATCG-ACCTAGTCCACCTCTGTGTGCTGTCGGTC
66 CGACCGGAGAGGCAAAATGCACAAGCTGGGGATGGCA-C-GGTCC-CCCCTGCGTGCTGTCGATC
* ** * * **
27312349 CCGCTGCCACAACTCTCGGTCCAGCTGGGG
128 CTGCTGCCGTAACT-TCGGTCCAGTTTGAT
* * *
27312379 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
* * * *
27312444 CAACCAGAGAGGCAGAATGCACAAGCTGGGGAATGGCACGGTCCCCCCTGCGTACTGTCGATCCT
66 CGACCGGAGAGGCAAAATGCACAAGCTGGGG-ATGGCACGGTCCCCCCTGCGTGCTGTCGATCCT
*
27312509 GCTGCCGTAACCTTCGGTCCGGTTTGAT
130 GCTGCCGTAA-CTTCGGTCCAGTTTGAT
27312537 CTTAGAC-TAGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
27312564 TTAGACTGGG
Statistics
Matches: 254, Mismatches: 79, Indels: 19
0.72 0.22 0.05
Matches are distributed among these distances:
156 72 0.28
157 11 0.04
158 91 0.36
159 75 0.30
160 4 0.02
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
CGACCGGAGAGGCAAAATGCACAAGCTGGGGATGGCACGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCGTAACTTCGGTCCAGTTTGAT
Found at i:27312578 original size:26 final size:26
Alignment explanation
Indices: 27312537--27312589 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27312527 CCGGTTTGAT
27312537 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
27312563 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
27312589 C
1 C
27312590 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:27312885 original size:30 final size:30
Alignment explanation
Indices: 27312851--27312907 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
27312841 CCCCCCTATC
* * **
27312851 TGCTATCGATCCTGCTGTCACAACCCTGCG
1 TGCTACCGATCCTACTACCACAACCCTGCG
27312881 TGCTACCGATCCTACTACCACAACCCT
1 TGCTACCGATCCTACTACCACAACCCT
27312908 CGATCCGGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.21, C:0.40, G:0.14, T:0.25
Consensus pattern (30 bp):
TGCTACCGATCCTACTACCACAACCCTGCG
Found at i:27312960 original size:26 final size:26
Alignment explanation
Indices: 27312922--27312974 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27312912 CCGGTTCGAT
*
27312922 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27312948 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
27312974 C
1 C
27312975 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27313304 original size:886 final size:865
Alignment explanation
Indices: 27311447--27314339 Score: 3021
Period size: 878 Copynumber: 3.3 Consensus size: 865
27311437 GGATTGGCCT
* ** * *
27311447 GGTCCCCCTCTGCGTGTTACCGATCCCGCTGCCACAACCCTC-AGTCTGGCTGGGGCTTAGAAAT
1 GGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGA-TCCGGCTGGGGCTTAGACAT
* * * *
27311511 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGCGCTCAGTCGACCGGAG
65 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAGCCAACCGGAG
* * * * * * * * *
27311576 AGGCAGAATGCGCAAGCCAGAGATCGACCCGATCCCCCCTGCGTGCTGCCAATCCTACAGCTGCA
130 AGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTGCCGCA
* * * *
27311641 ACCCTCGGTCTGATTCT-ATCTTAGACTGGGAAGGAACCCCGTATGCTTAGACTGGGGATGAACT
195 ACCCTCGGTCCGA-TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACT
* * * *
27311705 CCGTATGCCTAACTCAACCCACGAAACGAGCGTACGGGCACTCAGTTGGTCGGAGAGGTCGACCG
259 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCA----G-C--------CTACCA
* * * * * *
27311770 GAGAGGCATAATGCGTAAGCT-GGGATCAGCCCGGTCCCTCTCTATGTGCTACAGATCCCGCTAC
311 GAGAGGCATAATACGTAAGCTGGGGATCAG-CCGATCCCCCTCTACGTGCTAC-GATCCAGCTGC
* *
27311834 CAGTCCTGCTACCACAACCCTTGGTCCGACTGGGGCTTAGACAAGGAATGAACTCCGTATGCCTA
374 CGGTCCTGCTACCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * * * *
27311899 AGCCAACCCAGGAAACGAGTGTACGGGCGCTCAACCGGTCGAAAGGCAGAATGCGCAAGCCAGGG
439 AGCCAACCCACGAAACAAGTGTGCGGGCGCTCAGCCGGTCGAGAGGCAGAATGCGCAAGCCAGGG
* * *
27311964 ATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCTTGT---TGC-TG---GTCCTGCTACCGCAACC
504 ATCGGCCCGATCCCCCCTTC-TGCTGTCGATCTTGTCACTGCGTGTCCGTCCT-CTACCGCAACC
*
27312022 CTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCTT
567 CTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCAT
* *
27312087 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGGCGGAGAGGCAAAATGCGTA
632 ATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGTA
* * * * * * *
27312152 AGCTGGAGACGGCCCGAACCCCCT-TGCGTGCTGTCGATTCTACTATCGTAATGCTT-GTTCCAG
697 AGCCGG-GATGGCCCGATCCCCCTAT--GTGCTGTCGATCCTACTATCGTAA-CCTTCATTCTAG
** * * *
27312215 TCTGATCTTAGACTGGAATGAACTCCGCATGCCTTATTCAACCCACGAAATGAGCATTCAGGCAC
758 TCCAATCTTAGACTGGAATGAACTCCGTATGCC-TAATCAACCCACGAAACGAGCATTCAGGCAC
* * * *
27312280 TAAGCCGACCGGAGAGGCATAGTACACAAGCTGGGGATCGACCT
822 TAAGCCGATCGGAGAGGCATAATACACAAGCAGGGGATCGACCC
* * * * * * *
27312324 AGTCCACCTCTGTGTGCTGTCGGTCCCGCTGCCACAACTCTCGGTCCAGCTGGGGCTTAGACATG
1 GGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATG
* *
27312389 GAATAAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAGCCAACCAGAGA
66 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAGCCAACCGGAGA
** * * * * *
27312454 GGCAGAATGCACAAGCTGGGGAAT-GGCACGGTCCCCCCTGCGTACTGTCGATCCTGCTGCCGTA
131 GGCAGAATGCACAAGCCAGGG-ATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTGCCGCA
* * * *
27312518 ACCTTCGGTCCGGTTTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTC
195 ACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTC
* *
27312583 CATATGCCTAAGTCAACCCATGAAAGGAGCGTACGGGCACTCAGCCTACCAGAGAGGCATAATAC
260 CGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAGCCTACCAGAGAGGCATAATAC
* * * *
27312648 GTAAGCTGGGGATCAGCTTGATCCCCCTCTACGTGCTATCGATCCAGCTGTCGGTCCTACTGCCA
325 GTAAGCTGGGGATCAGC-CGATCCCCCTCTACGTGCTA-CGATCCAGCTGCCGGTCCTGCTACCA
* * * * *
27312713 CACCCCTCGGTCCGGCTGAGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCACGAA
388 CAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * **
27312778 ACAAGTGTGCGGGCGCTCAGCCGGTCGGAGAGGCAAAATACGCAAGCCAAAGATCGGCCCGATCC
453 ACAAGTGTGCGGGCGCTCAGCCGGTC-GAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCC
* *
27312843 CCCCTATCTGCTATCGATCCTGCTGTCACAACCCTGCGTGCTACCGATCCTACTACCACAACCCT
517 CCCCT-TCTGCTGTCGAT-CT--TGT--C-A--CTGCGTG-T-CCG-TCCT-CTACCGCAACCCT
* * * *
27312908 CGATCCGGT-TCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTA
569 CGATCCAGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATA
* * * * *
27312972 TGCCTAAGTCAACCCATGAACCGAGCGTGCGGGTGCTCAGCCTGCCGGAGAGGCAGAATACGCAA
633 TGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGTAA
* * * *
27313037 GCCAGGGATTGGCCTGATTCCCCCTATGTGCTGTCGATCCTACTGTTGCAACCTTCATTCTAGTC
698 GCC-GGGA-TGGCCCGA-TCCCCCTATGTGCTGTCGATCCTACTATCGTAACCTTCATTCTAGTC
* * **
27313102 CAATCTTAGACTAGGAATGAACTCTGTATGCCTAGATCAACCCATGAAACGAGCATTCAGGTGCT
760 CAATCTTAGACT-GGAATGAACTCCGTATGCCTA-ATCAACCCACGAAACGAGCATTCAGGCACT
* * * *
27313167 AAGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCC
823 AAGCCGATCGGAGAGGCATAATACACAAGCAGGGGATCGACCC
** *
27313210 GGTCCCCCTCTGCGTGCTGTCGATGTCGTTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATG
1 GGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATG
* * * *
27313275 GAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTACGGGAGCTCAGCCAGCCGGAGA
66 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAGCCAACCGGAGA
* * * * * * * * *
27313340 GGTAGAATACGCAAGTC-GAGGATTGGCCCGGTCCCCCCTACGTGCTATCGATACTGCTGCCGTA
131 GGCAGAATGCACAAGCCAG-GGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTGCCGCA
* * *
27313404 ACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTC
195 ACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTC
* * * * *
27313469 CGTATGCCTGAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGAGGCTGGCCAG
260 CGTATGCCTAAGTCAACCCATGAAACGAGCGTAC-GG-G--CA--C--TC----AGCCT-ACCAG
* * * * * *
27313534 AGAGGCATAATACGCAAGCTGGGGAT-AGCCCAGCCCCTCTCTGCTTGCTGCCGATTCCA-CTGC
312 AGAGGCATAATACGTAAGCTGGGGATCAGCCGATCCCC-CTCTACGTGCT-ACGA-TCCAGCTGC
* **
27313597 CGGTCCTGCTACCACAACCCTTGGTCCGACTGGGGCTTAGACATGTAATGAACTTTGTATGCCTA
374 CGGTCCTGCTACCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTA
* * * * * * **
27313662 AGCCAA-CCACGAAACAAGCGTGCGGACGCTCAGCTGATTAGAGAGGCAGAATGTGCAAGCTGGG
439 AGCCAACCCACGAAACAAGTGTGCGGGCGCTCAGCCG-GTCGAGAGGCAGAATGCGCAAGCCAGG
* * * * *
27313726 GATCGACCCGATCCGCCCTGTATGCTGTCGATCTTG-CTACT--G-GTCC-TGCTGT--CGCAAC
503 GATCGGCCCGATCCCCCCT-TCTGCTGTCGATCTTGTC-ACTGCGTGTCCGTCCTCTACCGCAAC
* * * * *
27313784 CTTCGGTCTAGTCTGATCTTAGACTGGGAATGTACTCCATATGCTTAGACATGGAATGAACTCCA
566 CCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCA
* ** * * * * *
27313849 TATGCCTAAGCCAACGCACAAAATGAGCGTGCAGGCGCTTAGCCGGTCGGAGAGGCAGAATGCGT
631 TATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGT
* * * * * * *
27313914 AAGCCGAGGACTGGCCCGATCCCCCAACGTGCTGTCGATCCTGCCACCGTAACCCTCAGTCTAGT
696 AAGCCG-GGA-TGGCCCGATCCCCCTATGTGCTGTCGATCCTACTATCGTAACCTTCATTCTAGT
* * * * *
27313979 CCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCAC
759 CCAATCTTAGACT-GGAATGAACTCCGTATGCCTAA-TCAACCCACGAAACGAGCATTCAGGCAC
* * *
27314044 TGAGCCGATCGAAGAGGCATAATACACAAGCAGGGGATCGGCCC
822 TAAGCCGATCGGAGAGGCATAATACACAAGCAGGGGATCGACCC
* * * * * * *
27314088 GGTCCCCCTCTACGTGCTGTCGGTCCCGCTGCCATAACCCTAGGTCCGACTGGGGCTTACACATG
1 GGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATG
* * * * * *
27314153 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCAGGCGCTTAGCCGACTGGAGA
66 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAGCCAACCGGAGA
* * * * *
27314218 GGTAGAATTCGA-AAGCCAGGGATCGGTCTGGTCCCCCCTACGTGCTGTCGATCCTACTGTCGCA
131 GGCAGAATGC-ACAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTGCCGCA
* * * *
27314282 ACCCTCGGTCCGGTCTAATCTTAGACTGGGAATAAACTCCATTTGCTTAGACTGGGGA
195 ACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGA
27314340 CAAACTCTGT
Statistics
Matches: 1674, Mismatches: 284, Indels: 115
0.81 0.14 0.06
Matches are distributed among these distances:
864 25 0.01
865 124 0.07
866 46 0.03
867 3 0.00
869 3 0.00
872 1 0.00
873 1 0.00
876 2 0.00
877 255 0.15
878 342 0.20
879 127 0.08
880 1 0.00
881 1 0.00
882 3 0.00
883 2 0.00
884 141 0.08
885 51 0.03
886 336 0.20
887 4 0.00
888 1 0.00
889 2 0.00
890 2 0.00
891 2 0.00
892 1 0.00
894 3 0.00
896 2 0.00
897 76 0.05
898 84 0.05
899 33 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (865 bp):
GGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATG
GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAGCCAACCGGAGA
GGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCCTACTGCCGCAA
CCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCC
GTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAGCCTACCAGAGAGGCATAATACG
TAAGCTGGGGATCAGCCGATCCCCCTCTACGTGCTACGATCCAGCTGCCGGTCCTGCTACCACAA
CCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACA
AGTGTGCGGGCGCTCAGCCGGTCGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCC
TTCTGCTGTCGATCTTGTCACTGCGTGTCCGTCCTCTACCGCAACCCTCGATCCAGTCTGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATG
AAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCCGGGATGGCCCGATCC
CCCTATGTGCTGTCGATCCTACTATCGTAACCTTCATTCTAGTCCAATCTTAGACTGGAATGAAC
TCCGTATGCCTAATCAACCCACGAAACGAGCATTCAGGCACTAAGCCGATCGGAGAGGCATAATA
CACAAGCAGGGGATCGACCC
Found at i:27313443 original size:158 final size:155
Alignment explanation
Indices: 27312948--27313446 Score: 441
Period size: 158 Copynumber: 3.2 Consensus size: 155
27312938 ACTCTGTATG
* *
27312948 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAACCGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGC
* * * * *
27313013 CTGCCGGAGAGGCAGAATACGCAAGCCAGGGATTGGCCTGATTCCCCCTATGTGCTGTCGATCCT
66 C-GCCGGAGAGGCAGAATACGCAAGCGA-GGATTGGCCCGGTCCCCCCTACGTGCTGTCGAT-CT
* ** * * * **
27313078 ACTGTTGCAACCTTC-ATTCTAGTCCAAT
128 GCTGCCGCAACCCTCGATCCGA-TCTGAT
* * * * *
27313106 CTTAGAC-TAGGAATGAACTCTGTATGCCT-AGATCAACCCATGAAACGAGCATTCAGGTGCTAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-TCAACCCATGAAACGAGCGTACGGGTGCTCA
* * * * *** *
27313169 GCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGTCGAT
64 GCCG-CCGGAGAGGCAGAATACGCAAG-CGAGGATTGGCCCGGTCCCCC-CTACGTGCTGTCGAT
* * * * **
27313234 GTCGTTGCCACAACCCTCGATCCG-GCTGGGG
126 CT-GCTGCCGCAACCCTCGATCCGATCT-GAT
* * * * * *
27313265 CTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTACGGGAGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGC
* *
27313330 CAGCCGGAGAGGTAGAATACGCAAGTCGAGGATTGGCCCGGTCCCCCCTACGTGCTATCGATACT
66 C-GCCGGAGAGGCAGAATACGCAAG-CGAGGATTGGCCCGGTCCCCCCTACGTGCTGTCGAT-CT
*
27313395 GCTGCCGTAACCCTCGATCCGATCTGAT
128 GCTGCCGCAACCCTCGATCCGATCTGAT
27313423 CTTAGAC-TGGGAATGAACTCCGTA
1 CTTAGACAT-GGAATGAACTCCGTA
27313447 CGCTTAGACT
Statistics
Matches: 264, Mismatches: 63, Indels: 28
0.74 0.18 0.08
Matches are distributed among these distances:
157 5 0.02
158 141 0.53
159 111 0.42
160 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGC
CGCCGGAGAGGCAGAATACGCAAGCGAGGATTGGCCCGGTCCCCCCTACGTGCTGTCGATCTGCT
GCCGCAACCCTCGATCCGATCTGAT
Found at i:27313452 original size:26 final size:26
Alignment explanation
Indices: 27313423--27313472 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
27313413 CCGATCTGAT
27313423 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
27313449 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
27313473 TGCCTGAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:27313533 original size:13 final size:13
Alignment explanation
Indices: 27313515--27313539 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27313505 GCGCTCAGCC
27313515 GGCCAGAGAGGCT
1 GGCCAGAGAGGCT
27313528 GGCCAGAGAGGC
1 GGCCAGAGAGGC
27313540 ATAATACGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.48, T:0.04
Consensus pattern (13 bp):
GGCCAGAGAGGCT
Found at i:27313839 original size:26 final size:26
Alignment explanation
Indices: 27313801--27313853 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27313791 CTAGTCTGAT
*
27313801 CTTAGACTGGGAATGTACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
27313827 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
27313853 C
1 C
27313854 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27314921 original size:26 final size:26
Alignment explanation
Indices: 27314892--27314970 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
27314882 CCGATCCAAT
*
27314892 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
27314918 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
* * *
27314944 CTTAGATTGGGGTTGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
27314970 C
1 C
27314971 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:27315243 original size:170 final size:170
Alignment explanation
Indices: 27315067--27315382 Score: 361
Period size: 170 Copynumber: 1.9 Consensus size: 170
27315057 TTGCTACTGC
* ***
27315067 CGATCCTACTGCCAGTCCTGCTGCCACAACCCTC-GATCCGG-CTGGGGCCTAGAC-ATGGAATG
1 CGATCCTACTGCCAGTCCTGCTACCACAACCCTCAG-TCCGGTC-CAAGCCTAGACTA-GGAATG
* ** * *
27315129 AACTCCGTATGCCTAAGCCAACCCACGAAACGAATGTGCGGGCGCTCAGCCAGTCAGAGAGGCAG
63 AACTCCATATGCCTAAGCCAACCCACGAAACGAACATGCGGGCGCTCAACCAGTAAGAGAGGCAG
27315194 AATGCGCAAG-CTGGGGATCAGCCTGATCCCCCCTATGTGTTGT
128 AATGCGCAAGTC-GGGGATCAGCCTGATCCCCCCTATGTGTTGT
** ** * ** * *
27315237 CGATCCTGTTGCTGGTCCTGCTATCGTAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAAC
1 CGATCCTACTGCCAGTCCTGCTACCACAACCCTCAGTCCGGTCCAAGCCTAGACTAGGAATGAAC
* * * *
27315302 TCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTTAACCGGTAAGAGAGGCAGAAT
66 TCCATATGCCTAAGCCAACCCACGAAACGAACATGCGGGCGCTCAACCAGTAAGAGAGGCAGAAT
*
27315367 GTGCAAGTCGGGGATC
131 GCGCAAGTCGGGGATC
27315383 GACCCGGTCC
Statistics
Matches: 119, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
170 115 0.97
171 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (170 bp):
CGATCCTACTGCCAGTCCTGCTACCACAACCCTCAGTCCGGTCCAAGCCTAGACTAGGAATGAAC
TCCATATGCCTAAGCCAACCCACGAAACGAACATGCGGGCGCTCAACCAGTAAGAGAGGCAGAAT
GCGCAAGTCGGGGATCAGCCTGATCCCCCCTATGTGTTGT
Found at i:27316270 original size:158 final size:154
Alignment explanation
Indices: 27315809--27316258 Score: 419
Period size: 158 Copynumber: 2.8 Consensus size: 154
27315799 AACTTCGTAT
**
27315809 GCTTAGACATGGAATGAACTCCATATATCTAAGCCAACCCATGAAATGAGCGTATG-GGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATG-G-G-ATGCGGCGCTCA
* * *
27315873 ACCGATCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACTC-AGTCCCCCCTGCGTGCTGTCGAT
63 GCCGATCGGAGAGGCAGAATGCGTAAGTCAGGGATCG-CTCGA-T-CCCCCTGCGTGCTATCGAT
*
27315937 CCTGCTGCCGTAACCCTCTGTCCAATCTGA
125 CCTGCTGCCGCAACCCTCTGTCCAATCTGA
* * * * * * * *
27315967 TCTTAGAC-TGGGAATGAACTTCGTATGCCT-AGTCAACCCATGAAATGAGAGTTCGGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGGGA-TGC-GGCGCTCA
* * * * *
27316030 GCCGATCGGAGAGGCATAATGCATAAG-CCGAGGATCAGCCCGGATCCCCTCTGCGTGCTACCGA
63 GCCGATCGGAGAGGCAGAATGCGTAAGTCAG-GGATC-GCTC-GATCCCC-CTGCGTGCTATCGA
** * * *
27316094 TCCCACTGCCACAACCCTCAT-TCCAGT-TGGG
124 TCCTGCTGCCGCAACCCTC-TGTCCAATCT-GA
*
27316125 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGCATGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGGG-ATGCG-GCGCTCAG
* * * *
27316190 CCGGTCAGAGAGGTAGAATGCGCAAGTCAGGGATCTGCTCGATCCCTCCTGCGTGCTATCGATCC
64 CCGATCGGAGAGGCAGAATGCGTAAGTCAGGGATC-GCTCGATCCC-CCTGCGTGCTATCGATCC
27316255 TGCT
127 TGCT
27316259 ATCGCAGCCC
Statistics
Matches: 231, Mismatches: 44, Indels: 34
0.75 0.14 0.11
Matches are distributed among these distances:
154 1 0.00
155 2 0.01
156 2 0.01
157 59 0.26
158 108 0.47
159 56 0.24
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (154 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGGGATGCGGCGCTCAGCC
GATCGGAGAGGCAGAATGCGTAAGTCAGGGATCGCTCGATCCCCCTGCGTGCTATCGATCCTGCT
GCCGCAACCCTCTGTCCAATCTGA
Found at i:27316974 original size:26 final size:26
Alignment explanation
Indices: 27316938--27316990 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27316928 TCGGTCTAAT
* *
27316938 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
27316964 CTTAGACTGGGGATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
27316990 C
1 C
27316991 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:27317548 original size:160 final size:158
Alignment explanation
Indices: 27317272--27317640 Score: 418
Period size: 160 Copynumber: 2.3 Consensus size: 158
27317262 TTGTTGCTGG
* * * *
27317272 TCCTGCTACCGTAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGC
1 TCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTACCTATGCCTAAGC
* * * * * *
27317337 CAACCCACGAAACGAGCGTGCAGGTGCTCAGCTGGCCAGAGAGGTAGAATGCACAACCCGAGGAC
66 CAACCCACCAAACGAGCGTACAGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAACCCGAGGAC
* *
27317402 CAGCCTGATCCACACCCCTGTGTGCTGTCAA
131 CAGCCTGAT-C-C-CCCCTGCGTGCTGCCAA
* * * * *
27317433 TCCTGCTATCGCAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAAGTCCCTATGCCTAAGT
1 TCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTACCTATGCCTAAGC
* * * *** *
27317497 CAACCCACCAAACGGGCGTAC-GGACGCTCAGCCGATCGGAGAGGCAGAATGCACAAGTTGGGGA
66 CAACCCACCAAACGAGCGTACAGG-CGCTCAGCCGACCAGAGAGGCAGAATGCACAACCCGAGGA
* * * *
27317561 TCGGCCTGATCCCCCTTGCGTGCTGCCGA
130 CCAGCCTGATCCCCCCTGCGTGCTGCCAA
* *
27317590 TCCTGCTGCCGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACT
1 TCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACT
27317641 CTGTATGCTT
Statistics
Matches: 173, Mismatches: 33, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
157 49 0.28
158 10 0.06
159 3 0.02
160 76 0.44
161 35 0.20
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.21
Consensus pattern (158 bp):
TCCTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTACCTATGCCTAAGC
CAACCCACCAAACGAGCGTACAGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAACCCGAGGAC
CAGCCTGATCCCCCCTGCGTGCTGCCAA
Found at i:27317651 original size:26 final size:26
Alignment explanation
Indices: 27317622--27317674 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27317612 CCGATCTGAT
27317622 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
27317648 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
27317674 C
1 C
27317675 CTAAGCAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:27317974 original size:170 final size:171
Alignment explanation
Indices: 27317647--27318109 Score: 393
Period size: 170 Copynumber: 2.7 Consensus size: 171
27317637 AACTCTGTAT
* * * * * *
27317647 GCTTAGACTGGGGATGAACTCTGTATGCCTAAGCAAACCCACGAAACAAGCGTACGGGCGTTCAG
1 GCTTAGACTGGGAATGAACTATGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAG
* * * * * * * * * * **
27317712 CCGGTCGGAGAAGCATAATGCACAAGCCGGGGATCCA--TCGGTCC-CCCTCTACGTGCTGCTGA
66 CCGGCCAGAGAGGCAGAATGCGCAAGTCAGGGA-CCAGCCCGATCCACCC-CTGCGTGCTGCCAA
* * * * * * ** * * *
27317774 TCTCGCTG-TCAGTCTTACTGCCACAACCCTCAGT-TCGGCTGGG
129 TCTTGTTGAT-GGTCCTGCTACCGGAACCCTCAGTCCCAGCT-GA
* * * * *
27317817 GCTTAGACAT-GGAATGAACTTTGTATGCTTAAGTCAACCCAC-AGAACGAGCGTGCGGGCGCTC
1 GCTTAGAC-TGGGAATGAACTATGTATGCCTAAGCCAACCCACGA-AACGAGCGTACAGGCGCTC
*** * * * *
27317880 AGCCGGGTGGAGAGGCAGAATGTGCAAGTCAGGGATCGGCCCGGTCC-CCCCTGCGTGCTGCCAA
64 AGCCGGCCAGAGAGGCAGAATGCGCAAGTCAGGGACCAGCCCGATCCACCCCTGCGTGCTGCCAA
*
27317944 TCTTGTTGATGGTCCTGCTACCGGAACCCTCAGTCCCATCTGA
129 TCTTGTTGATGGTCCTGCTACCGGAACCCTCAGTCCCAGCTGA
* *
27317987 TCTTAGACTGGGAATGAACTATGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGTGCTCAG
1 GCTTAGACTGGGAATGAACTATGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAG
** *
27318052 TTGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCAGCCCGATCCACCCCTGCGTGCT
66 CCGGCCAGAGAGGCAGAATGCGCAAGTCAGGGACCAGCCCGATCCACCCCTGCGTGCT
27318110 ATTACTCCTA
Statistics
Matches: 233, Mismatches: 51, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
169 3 0.01
170 203 0.87
171 27 0.12
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTATGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAG
CCGGCCAGAGAGGCAGAATGCGCAAGTCAGGGACCAGCCCGATCCACCCCTGCGTGCTGCCAATC
TTGTTGATGGTCCTGCTACCGGAACCCTCAGTCCCAGCTGA
Found at i:27318289 original size:159 final size:159
Alignment explanation
Indices: 27317985--27318291 Score: 364
Period size: 159 Copynumber: 1.9 Consensus size: 159
27317975 AGTCCCATCT
** *
27317985 GATCTTAGACTGGGAATGAACTATGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGTGCTC
1 GATCTTAGACTGGGAATGAACTACATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGAGCTC
** * * *
27318050 AGTTGGCCAGAGAGGCAGAATGCGCAAGTCGGGGACCAGCCCGATCCACCCCTGCGTGCTATTAC
66 AGCCGACCAGAGAGGCAGAATGCGCAAGTCAGGGACCAGCCCGATCCACCCCTGCGTGCTATCAC
* **
27318115 TCCTACTGCTGCAACCCTCAATCTGGTTC
131 TCCCACTGCCACAACCCTCAATCTGGTTC
* * * * *
27318144 GATCTTAGACTGGGTATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTCCAGGAGCTG
1 GATCTTAGACTGGGAATGAACTACATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGAGCTC
* * * * * * * *
27318209 AGCCGACCGGAGAGGCATAATGGGCAAGTCAGGGATCGGCCCGATCC-CCCTCTGTGTGCTGTCG
66 AGCCGACCAGAGAGGCAGAATGCGCAAGTCAGGGACCAGCCCGATCCACCC-CTGCGTGCTATCA
* *
27318273 GTCCCGCTGCCACAACCCT
130 CTCCCACTGCCACAACCCT
27318292 TGGTCTGACT
Statistics
Matches: 121, Mismatches: 26, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
158 3 0.02
159 118 0.98
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
GATCTTAGACTGGGAATGAACTACATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGAGCTC
AGCCGACCAGAGAGGCAGAATGCGCAAGTCAGGGACCAGCCCGATCCACCCCTGCGTGCTATCAC
TCCCACTGCCACAACCCTCAATCTGGTTC
Found at i:27318291 original size:684 final size:684
Alignment explanation
Indices: 27316872--27318296 Score: 1878
Period size: 684 Copynumber: 2.1 Consensus size: 684
27316862 GCCTAAGCCG
* * * * * * *
27316872 GGGATCAGCCCGGTCCCCCCTTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTTCGGTCTAA
1 GGGATCGGCCCGAT-CCCCCTTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCCGATCTAA
*
27316937 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATCAACTCCGTATGCCTAAGTAAACC
65 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATCAACTCCGTATGCCTAAGCAAACC
** * *
27317002 CACGAAATGAGCGGACGGCCGCTCAGTCGGCTGGAGAAGCATAATGCACAAGTCGGGGATCCACC
130 CACGAAACAAGCGGACGGCCGCTCAGCCGGCTGGAGAAGCATAATGCACAAGCCGGGGATCCACC
* * * *
27317067 AATCCCCATCTGCATGCTACTGATCCCGTTACCGGTCCTATTGCCACAACCCTCGATTCGGCTGG
195 AATCCCCATCTACATGCTACTGATCCCGCTACCAGTCCTACTGCCACAACCCTCGATTCGGCTGG
27317132 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCA
260 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCA
* * * * * *
27317197 GTCGGCCGGAGAGGCAGAATACGCAAGTCGGGGATCAGCCTGGTCCCTCTTACGTGCTGCCAATT
325 GCCGGCCGGAGAGGCAGAATACGCAAGTCAGGGATCAGCCCGGTCCCCCCTACGTGCTGCCAATC
* * **
27317262 TTGTTGCTGGTCCTGCTACCGTAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTACGT
390 TTGTTGATGGTCCTGCTACCGGAACCCTCGATCCCATCTGATCTTAGACTGGGAATGAACTACGT
* *
27317327 ATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGTGCTCAGCTGGCCAGAGAGGTAGAATGCACA
455 ATGCCTAAGCCAACCCACGAAACGAGCGTACAGGTGCTCAGCTGGCCAGAGAGGCAGAATGCACA
* * * * **
27317392 ACCCGAGGACCAGCCTGATCCACACCCCTGTGTGCTGTCAATCCTGCTATCGCAACCCTCGGTCC
520 ACCCGAGGACCAGCCCGATCCACACCCCTGCGTGCTATCAATCCTACTATCGCAACCCTCAATCC
* * *
27317457 GGTCTGATCTTAGACTGGAATGAAGTCCCTATGCCTAAGTCAACCCACCAAACGGGCGTACGGAC
585 GGTCTGATCTTAGACTGGAATGAACTCCATATGCCTAAGTCAACCCACCAAACGAGCGTACGGAC
* **
27317522 GCTCAGCCGATCGGAGAGGCAGAATGCACAAGTTG
650 GCTCAGCCGACCGGAGAGGCAGAATGCACAAGTCA
* * *
27317557 GGGATCGGCCTGATCCCCCTTGCGTGCTGCCGATCCTGCTGCCGCAACCCTTGGTCCGATCTGAT
1 GGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCCGATCTAAT
* *
27317622 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGCAAACCC
66 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATCAACTCCGTATGCCTAAGCAAACCC
* * * *
27317687 ACGAAACAAGCGTACGGGCGTTCAGCCGG-TCGGAGAAGCATAATGCACAAGCCGGGGATCCATC
131 ACGAAACAAGCGGACGGCCGCTCAGCCGGCT-GGAGAAGCATAATGCACAAGCCGGGGATCCACC
** * * * * ** *
27317751 GGTCCCCCTCTACGTGCTGCTGATCTCGCTGTCAGTCTTACTGCCACAACCCTC-AGTTCGGCTG
195 AATCCCCATCTACATGCTACTGATCCCGCTACCAGTCCTACTGCCACAACCCTCGA-TTCGGCTG
** * * * *
27317815 GGGCTTAGACATGGAATGAACTTTGTATGCTTAAGTCAACCCAC-AGAACGAGCGTGCGGGCGCT
259 GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA-AACGAACGTGCGGGCACT
** ** * *
27317879 CAGCCGGGTGGAGAGGCAGAATGTGCAAGTCAGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCAA
323 CAGCCGGCCGGAGAGGCAGAATACGCAAGTCAGGGATCAGCCCGGTCCCCCCTACGTGCTGCCAA
27317944 TCTTGTTGATGGTCCTGCTACCGGAACCCTC-AGTCCCATCTGATCTTAGACTGGGAATGAACTA
388 TCTTGTTGATGGTCCTGCTACCGGAACCCTCGA-TCCCATCTGATCTTAGACTGGGAATGAACTA
* *
27318008 TGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGTGCTCAGTTGGCCAGAGAGGCAGAATGC
452 CGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGTGCTCAGCTGGCCAGAGAGGCAGAATGC
* ** * * * *
27318073 GCAAGTCGGGGACCAGCCCGAT-C-CACCCCTGCGTGCTATTACTCCTACT-GCTGCAACCCTCA
517 ACAACCCGAGGACCAGCCCGATCCACACCCCTGCGTGCTATCAATCCTACTATC-GCAACCCTCA
* * *
27318135 ATCTGGT-TCGATCTTAGACTGGGTATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGT
581 ATCCGGTCT-GATCTTAGACT-GGAATGAACTCCATATGCCTAAGTCAACCCACCAAACGAGCGT
* * * **
27318199 CCAGGA-GCTGAGCCGACCGGAGAGGCATAATGGGCAAGTCA
644 AC-GGACGCTCAGCCGACCGGAGAGGCAGAATGCACAAGTCA
* * * *
27318240 GGGATCGGCCCGATCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTTGGTC
1 GGGATCGGCCCGATCCCCCT-TGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTC
27318297 TGACTGGGGC
Statistics
Matches: 638, Mismatches: 93, Indels: 19
0.85 0.12 0.03
Matches are distributed among these distances:
681 2 0.00
682 46 0.07
683 91 0.14
684 488 0.76
685 11 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (684 bp):
GGGATCGGCCCGATCCCCCTTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCCGATCTAAT
CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATCAACTCCGTATGCCTAAGCAAACCC
ACGAAACAAGCGGACGGCCGCTCAGCCGGCTGGAGAAGCATAATGCACAAGCCGGGGATCCACCA
ATCCCCATCTACATGCTACTGATCCCGCTACCAGTCCTACTGCCACAACCCTCGATTCGGCTGGG
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAG
CCGGCCGGAGAGGCAGAATACGCAAGTCAGGGATCAGCCCGGTCCCCCCTACGTGCTGCCAATCT
TGTTGATGGTCCTGCTACCGGAACCCTCGATCCCATCTGATCTTAGACTGGGAATGAACTACGTA
TGCCTAAGCCAACCCACGAAACGAGCGTACAGGTGCTCAGCTGGCCAGAGAGGCAGAATGCACAA
CCCGAGGACCAGCCCGATCCACACCCCTGCGTGCTATCAATCCTACTATCGCAACCCTCAATCCG
GTCTGATCTTAGACTGGAATGAACTCCATATGCCTAAGTCAACCCACCAAACGAGCGTACGGACG
CTCAGCCGACCGGAGAGGCAGAATGCACAAGTCA
Found at i:27318493 original size:26 final size:26
Alignment explanation
Indices: 27318464--27318516 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27318454 CCGATCCGAT
*
27318464 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27318490 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27318516 C
1 C
27318517 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27319441 original size:26 final size:26
Alignment explanation
Indices: 27319412--27319464 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27319402 CCAGTCCGAT
*
27319412 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
27319438 CTTAAACTGGGGATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
27319464 C
1 C
27319465 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:27319831 original size:26 final size:26
Alignment explanation
Indices: 27319793--27319845 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27319783 CCAGTCCAAT
27319793 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27319819 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27319845 C
1 C
27319846 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27320006 original size:26 final size:26
Alignment explanation
Indices: 27319977--27320029 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27319967 CCGGTCCGAT
27319977 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
27320003 CTTAGACATGGATTGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27320029 C
1 C
27320030 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27320527 original size:154 final size:156
Alignment explanation
Indices: 27320003--27320551 Score: 472
Period size: 159 Copynumber: 3.5 Consensus size: 156
27319993 ACTCCGTATG
* * * * *
27320003 CTTAGACAT-GGATTGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGGGCGTTCCG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
27320067 TC-GCCGAAGAGGCATAATGCGTAAGTCGGGGATCGA-CTCGGTCCCCTCTGCGTGTTGTTGATC
65 CCGGCCGGAGAGGCATAATACGTAAGTCGGGGATCGACCT-GGTCCCCCCTGCGTGTTG-CG-TC
* * * *
27320130 CTGCTATCACAACCCTTGGTTTC-ATCCGAT
127 CTGCTACCACAACCCTCGG-TCCGATACGAT
* * * *
27320160 CTTATA-TCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGG-GCTGA
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGGCGCTCA
* * * * *
27320223 GCCAGCCAGAGAGGCATAATACGTAAGCCGAGGATCGACCTGATCCCCCTCTGCGTGTTGCCAGT
64 GCCGGCCGGAGAGGCATAATACGTAAGTCGGGGATCGACCTGGTCCCCC-CTGCGTGTTG-C-GT
* * * * *
27320288 CCCGCTACCACAACCCTCGATCTGGCTACG-G
126 CCTGCTACCACAACCCTCGGTC-CGATACGAT
* * * * * *
27320319 CTTAGACAT-GGAATGAACACCCTATACCTAAGCCAACCTATGAAACGGGTGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * ** *
27320383 TCGGTCGGAGAGGCAAAATACGTAAGTCGGGGATCGACCTGGTCCCCCCTGC-TACTG-GTCTTG
65 CCGGCCGGAGAGGCATAATACGTAAGTCGGGGATCGACCTGGTCCCCCCTGCGTGTTGCGTCCTG
**
27320446 CTACCACAACCCTCGGTCCGATTTGAT
130 CTACCACAACCCTCGGTCCGATACGAT
* * * **
27320473 CTTAGACTGGGGATGAACTCCGTATGCTTAA-CTCAACCCATGAAATGAGCGTGCGGATGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAACGAGCGTGCGGGCGCTCAG
*
27320537 CCGACCGGAGAGGCA
65 CCGGCCGGAGAGGCA
27320552 GGATGCGCAA
Statistics
Matches: 307, Mismatches: 70, Indels: 33
0.75 0.17 0.08
Matches are distributed among these distances:
153 5 0.02
154 82 0.27
155 1 0.00
157 52 0.17
158 46 0.15
159 116 0.38
160 4 0.01
161 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCATAATACGTAAGTCGGGGATCGACCTGGTCCCCCCTGCGTGTTGCGTCCTGC
TACCACAACCCTCGGTCCGATACGAT
Found at i:27320573 original size:313 final size:315
Alignment explanation
Indices: 27320002--27320573 Score: 692
Period size: 313 Copynumber: 1.8 Consensus size: 315
27319992 AACTCCGTAT
* * * * * *
27320002 GCTTAGACATGGATTGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTACGGGCGTTCCG
1 GCTTAGACATGGAATGAACACCCTATACCTAAGCCAACCCATGAAACGAGTGTACGGGCGCTCAG
* * * **
27320067 TCGCCGAAGAGGCATAATGCGTAAGTCGGGGATCGACTCGGTCCCCTCTGCGTGTTGTTGATCCT
66 TCGCCGAAGAGGCAAAATACGTAAGTCGGGGATCGACTCGGTCCCCCCTGCGTACTG-TGATCCT
* * * * *
27320132 GCTATCACAACCCTTGGTTTCATCCGATCTTATATCGGGAATGAACTCCGTATGCCTAAGTCAAC
130 GCTACCACAACCCTCGGTTCCATCCGATCTTAGATCGGGAATGAACTCCGTATGCCTAACTCAAC
* * *
27320197 CCACGAAACGAGCGTGCAGGGGCTGAGCCAGCCAGAGAGGCATAATACGTAAGCCGAGGATCGAC
195 CCACGAAACGAGCGTGCAGGGGCTCAGCCAGCCAGAGAGGCAGAATACGCAAGCCGAGGATCGAC
27320262 CTGATCCCCCTCTGCGTGTTGCCAGTCCCGCTACCACAACCCTCGATCTGGCTACG
260 CTGATCCCCCTCTGCGTGTTGCCAGTCCCGCTACCACAACCCTCGATCTGGCTACG
* * *
27320318 GCTTAGACATGGAATGAACACCCTATACCTAAGCCAACCTATGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACACCCTATACCTAAGCCAACCCATGAAACGAGTGTACGGGCGCTCAG
* * *
27320383 TCGGTCGGAGAGGCAAAATACGTAAGTCGGGGATCGAC-CTGGTCCCCCCTGC-TACTG-G-TCT
66 TC-GCCGAAGAGGCAAAATACGTAAGTCGGGGATCGACTC-GGTCCCCCCTGCGTACTGTGATCC
** * *
27320444 TGCTACCACAACCCTCGG-TCCGATTTGATCTTAGA-CTGGGGATGAACTCCGTATGCTTAACTC
129 TGCTACCACAACCCTCGGTTCC-ATCCGATCTTAGATC-GGGAATGAACTCCGTATGCCTAACTC
* * * * * * * *
27320507 AACCCATGAAATGAGCGTGC-GGATGCTCAGCC-GACCGGAGAGGCAGGATGCGCAAGCTGGGGA
192 AACCCACGAAACGAGCGTGCAGG-GGCTCAGCCAG-CCAGAGAGGCAGAATACGCAAGCCGAGGA
27320570 TCGA
255 TCGA
27320574 ACGAGTGGTA
Statistics
Matches: 213, Mismatches: 37, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
312 6 0.03
313 102 0.48
314 1 0.00
316 62 0.29
317 42 0.20
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (315 bp):
GCTTAGACATGGAATGAACACCCTATACCTAAGCCAACCCATGAAACGAGTGTACGGGCGCTCAG
TCGCCGAAGAGGCAAAATACGTAAGTCGGGGATCGACTCGGTCCCCCCTGCGTACTGTGATCCTG
CTACCACAACCCTCGGTTCCATCCGATCTTAGATCGGGAATGAACTCCGTATGCCTAACTCAACC
CACGAAACGAGCGTGCAGGGGCTCAGCCAGCCAGAGAGGCAGAATACGCAAGCCGAGGATCGACC
TGATCCCCCTCTGCGTGTTGCCAGTCCCGCTACCACAACCCTCGATCTGGCTACG
Found at i:27321548 original size:26 final size:26
Alignment explanation
Indices: 27321512--27321564 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27321502 TTGGTCTGAT
*
27321512 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27321538 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27321564 C
1 C
27321565 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27321924 original size:26 final size:26
Alignment explanation
Indices: 27321892--27321944 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27321882 TCGATATGAT
*
27321892 CTTAGAC-TGAGAATGAACTCTGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
27321918 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27321944 C
1 C
27321945 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27322326 original size:159 final size:158
Alignment explanation
Indices: 27321917--27322333 Score: 401
Period size: 159 Copynumber: 2.6 Consensus size: 158
27321907 AACTCTGTAT
* *
27321917 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * * * * *
27321982 TAGGCCGAAGAAGCAGAATGCGTAAGCCAGGGATCAGCCCGGTCCCCCCTACATGCTGTCGATCC
66 CCGGACGAAGAGGCAGAATGCGTAAGCTAGGGATCAGCCCGATCCCCCCTACATGCTGCCGATCC
* ** *
27322047 TACTGTCGCAACCCTCAGTCCGGTCCAG
131 GACTACCACAACCCTCAGTCCGGTCCAG
* * * * * ** * *
27322075 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACT-AAACGTGCGTACAAGCGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA-TGAAACGAGCGTGCGGGCGCTC
* * * * * *
27322138 AGCC-GACCAGAGAGGCATAATGCGCAAGCTGGGGATCAGCTCGATCCCTCTCTACATGCTGCCG
64 AGCCGGACGA-AGAGGCAGAATGCGTAAGCTAGGGATCAGCCCGATCCC-CCCTACATGCTGCCG
* * ***
27322202 GTCCGACTACCACAACCCTCAGTCTGGTTGGG
127 ATCCGACTACCACAACCCTCAGTCCGGTCCAG
* ** *
27322234 GCTTAGACATGGAATGAACCCCCCATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCGCTCA
* **
27322298 GCCGGTCGAAGAGGCAGAATTTGTAAGCTAGGGATC
65 GCCGGACGAAGAGGCAGAATGCGTAAGCTAGGGATC
27322334 GACCTGGTCC
Statistics
Matches: 198, Mismatches: 53, Indels: 15
0.74 0.20 0.06
Matches are distributed among these distances:
157 4 0.02
158 82 0.41
159 108 0.55
160 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGACGAAGAGGCAGAATGCGTAAGCTAGGGATCAGCCCGATCCCCCCTACATGCTGCCGATCC
GACTACCACAACCCTCAGTCCGGTCCAG
Found at i:27322429 original size:26 final size:26
Alignment explanation
Indices: 27322393--27322445 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27322383 CCGATTTGAT
27322393 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
27322419 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
27322445 C
1 C
27322446 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:27322623 original size:26 final size:26
Alignment explanation
Indices: 27322585--27322637 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27322575 CCAATTCGAT
27322585 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27322611 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27322637 C
1 C
27322638 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27323773 original size:159 final size:158
Alignment explanation
Indices: 27323418--27323855 Score: 470
Period size: 159 Copynumber: 2.8 Consensus size: 158
27323408 AACTCTATAT
* * * *
27323418 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * *
27323483 CCGGTTGGAGAGGCAAAATGCGTAAATCGGGGACCGGCTCGATCCCCCTTACGTGCTATCGATCC
66 CCGGTTGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTTACGTGCTATCGATCC
** * * *
27323548 AGCTACTGCAACCTTCTGTCCGATCTGA
131 AGCTACCACAACCCTCAGTCCGAGCTGA
* * * * ** *
27323576 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAGGTCAACCCACGAATTGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
27323640 GCCAGTTGGAGAGGCATAATGCCCAAGCCGGGGATCGACCCGATCCCCCTCTGC-TCGCTGTCGA
65 GCCGGTTGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCT-TACGT-GCTATCGA
* *
27323704 TCCCGCTACCACAACCCTCAGTCCG-GCTAGG
128 TCCAGCTACCACAACCCTCAGTCCGAGCT-GA
* * *
27323735 GCTTAGACATGGAATGAACCCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
27323800 CCGGCTGAAGAGGTAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCC-TACGTGCT
66 CCGGTTGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTTACGTGCT
27323856 GCCGTTCCTA
Statistics
Matches: 225, Mismatches: 49, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 6 0.03
158 96 0.43
159 122 0.54
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTTGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTTACGTGCTATCGATCC
AGCTACCACAACCCTCAGTCCGAGCTGA
Found at i:27323938 original size:26 final size:26
Alignment explanation
Indices: 27323894--27323945 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27323884 TGATCTGATG
27323894 TTAGACTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
* * *
27323920 TTAGACTGGGGATGGACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
27323946 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:27324962 original size:197 final size:186
Alignment explanation
Indices: 27324615--27325202 Score: 598
Period size: 197 Copynumber: 3.1 Consensus size: 186
27324605 TGGCTCAAAC
* * * *
27324615 TCTTAGACTGGGAATGAAATCCGTATGCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGATTGGGAATGAACTCCGTATTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * *
27324680 CACAAAACGAGCGTGCGGGCGCTCAGCTGGCC-GGAGAGGTAGAATACGCAAGTTGGGGATTGGC
66 CACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGG-GAGGCAGAATACGCAAGTCGGGGATCGAC
* * * * *
27324744 CCGATCCCACTCTGTGTGCTGTCAATCCTACTGCTGGTCCTGCTGCCACAACCCTCGGT-CTGGT
130 CTGGTCCCCCCCTGAGTGCTGTCAATCCT--TGCT-G--CTG-T-----AACCCTCGGTGC-GGT
27324808 CCAA
183 CCAA
*
27324812 TCTTAGATTGGGAATGAACTCCGTATTCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACC
1 TCTTAGATTGGGAATGAACTCCGTATTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
27324877 AACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGGGAGGCAGAATGCACAAGTCGGGGACCGACC
66 CACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGGGAGGCAGAATACGCAAGTCGGGGATCGACC
* *
27324942 TGGTCCCCCCCTGAGTGCTGTCAAT-CTTGCTGCTGTAACCCTTGGTGCGGTCCGA
131 TGGTCCCCCCCTGAGTGCTGTCAATCCTTGCTGCTGTAACCCTCGGTGCGGTCCAA
* * *
27324997 TTTTAGATTGGGAATGAGCTCCGTATGT-TTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
1 TCTTAGATTGGGAATGAACTCCGTAT-TCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * ** *
27325061 CCACGAAATAAGCATACGGGGGCTCAGCCGGCCAAAGAGGCAGAATACGCAAG-CTGGGATCGAC
65 CCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGGGAGGCAGAATACGCAAGTCGGGGATCGAC
* * * ** * * * *
27325125 CTGGTCCCCTCCT-ACGTACTGTCAATCC-TGTTG-TCACAATCCTTGGTCCGGTCTAA
130 CTGGTCCCCCCCTGA-GTGCTGTCAATCCTTGCTGCT-GTAACCCTCGGTGCGGTCCAA
27325181 TCTTAGATTGGGAATGAACTCC
1 TCTTAGATTGGGAATGAACTCC
27325203 ATATGCCTAA
Statistics
Matches: 336, Mismatches: 49, Indels: 25
0.82 0.12 0.06
Matches are distributed among these distances:
183 2 0.01
184 70 0.21
185 118 0.35
186 2 0.01
190 1 0.00
191 3 0.01
193 1 0.00
194 4 0.01
196 2 0.01
197 131 0.39
198 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.23
Consensus pattern (186 bp):
TCTTAGATTGGGAATGAACTCCGTATTCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGGGAGGCAGAATACGCAAGTCGGGGATCGACC
TGGTCCCCCCCTGAGTGCTGTCAATCCTTGCTGCTGTAACCCTCGGTGCGGTCCAA
Found at i:27325521 original size:26 final size:26
Alignment explanation
Indices: 27325492--27325544 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27325482 TCGGTCCCAT
27325492 CTTAGACTGG-GAATGAACTCCATATG
1 CTTAGACTGGCG-ATGAACTCCATATG
*
27325518 CTTAGACTGGCGATGAACTCCGTATG
1 CTTAGACTGGCGATGAACTCCATATG
27325544 C
1 C
27325545 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCGATGAACTCCATATG
Found at i:27325843 original size:170 final size:169
Alignment explanation
Indices: 27325517--27325884 Score: 407
Period size: 170 Copynumber: 2.2 Consensus size: 169
27325507 AACTCCATAT
* * *
27325517 GCTTAGACTGGCGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCATGCGGGCGTTCAA
1 GCTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCGCTCAA
* * * * * *
27325582 CCGACCGAAGAGGCATAATGTGCAAGCCGGGGATCAGCCCGATCCCCCTATGAGTGTTGTCGATC
66 CAGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCC-ATGAGTGCTGTCAATC
* *
27325647 CCGTTGCCGGTCCTGTACCACAACCCTCGGTCCGACTGGG
130 CCGCTGCCAGTCCTGTACCACAACCCTCGGTCCGACTGGG
**
27325687 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCA
1 GCTTAGAC-TGGCAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCGCTCA
* ** * * *
27325751 ACAGGCCGAAGAGGCAGAATGCGCAAGCCGAGGATTGGCTCGGTCCCTCC-TGCGTGCTGTCAAT
65 ACAGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCC-CCATGAGTGCTGTCAAT
* * * * * * ** * *
27325815 CCTGCTGCTAGTCCTGCTGCCGCAACCCTCGATCTGGTTTGA
129 CCCGCTGCCAGTCCTG-TACCACAACCCTCGGTCCGACTGGG
* *
27325857 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGCAATGAACTCCGTATGC
27325885 TTAGACATGG
Statistics
Matches: 164, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
169 26 0.16
170 133 0.81
171 5 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (169 bp):
GCTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCGCTCAA
CAGACCGAAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCATGAGTGCTGTCAATCC
CGCTGCCAGTCCTGTACCACAACCCTCGGTCCGACTGGG
Found at i:27326455 original size:26 final size:26
Alignment explanation
Indices: 27326417--27326469 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27326407 GGCTCAAAAT
27326417 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27326443 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27326469 C
1 C
27326470 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27326651 original size:26 final size:26
Alignment explanation
Indices: 27326613--27326665 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27326603 CTGGTCTGAT
27326613 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27326639 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27326665 C
1 C
27326666 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27326984 original size:159 final size:156
Alignment explanation
Indices: 27326638--27327222 Score: 537
Period size: 159 Copynumber: 3.7 Consensus size: 156
27326628 AACTCCGTAT
* *
27326638 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCATGCGGGCGCTCAG
* * * * * *
27326703 CCGACCGGAGAGGTAGAATGCGCAAGCCAGGGATCTGGCCCGATCCCCCCTTATGTGCT-ATTGA
66 CCGGCCGGAGAGGCAGAATGCGTAAGCC-GGGATC-GGCCCGATCCCCTC-TGTGTGCTGACTG-
* ** ** * *
27326767 TCCTGCTACTGCAACCCTTAGTCCGGTCT-GA
127 TCC-GCTGCCACAACCCTCGGTCTGG-CTGGG
* * ** * * * *
27326798 TCTTAGGC-TGGGAATGAACTCTGTATGCCTAAGTCATCCCACAAAATGAGCATACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCATGCGGGCGCTCA
* * * *
27326862 GCTGGTCGGAGAGGCATAATGCGTAAGCCGTGGATCGGCCCGATCCCTCTCTGTGTGCTGCCTGT
65 GCCGGCCGGAGAGGCAGAATGCGTAAGCCG-GGATCGGCCCGATCCC-CTCTGTGTGCTGACTGT
*
27326927 GCCGCTGCCCCAACCCTCGGTCTGGCTGGG
128 -CCGCTGCCACAACCCTCGGTCTGGCTGGG
* * * * *
27326957 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGTGCATGCAGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCATGCGGGCGCTCAG
* * * * * * * ** * *
27327022 TCGGCCAGAGAGGCATAATGCGTAAGCCGGGGAACGACCTGGTCCCCCTCTGCATGCTGTCGGTC
66 CCGGCCGGAGAGGCAGAATGCGTAAGCC-GGGATCGGCCCGAT-CCCCTCTGTGTGCTGACTGT-
*
27327087 CCGCTGCCACAACCCTCGGTCTGACTGGG
128 CCGCTGCCACAACCCTCGGTCTGGCTGGG
* * ** *
27327116 GCTTAGACATGGAATGAACTCCCTCTGGCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCATGCGGGCGCTCAG
* * * *
27327181 CCGGCTGGAGAGGCAGAATGTGAAAGTCAGGGATCGGCCCGA
66 CCGGCCGGAGAGGCAGAATGCGTAAG-CCGGGATCGGCCCGA
27327223 CCTCCCTTAG
Statistics
Matches: 346, Mismatches: 69, Indels: 21
0.79 0.16 0.05
Matches are distributed among these distances:
158 2 0.01
159 250 0.72
160 94 0.27
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCATGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGTAAGCCGGGATCGGCCCGATCCCCTCTGTGTGCTGACTGTCCG
CTGCCACAACCCTCGGTCTGGCTGGG
Found at i:27328569 original size:157 final size:158
Alignment explanation
Indices: 27328306--27328592 Score: 405
Period size: 157 Copynumber: 1.8 Consensus size: 158
27328296 TGCTACCGGC
* * **
27328306 CCCACTACCATAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAATTC
1 CCCACTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * *
27328371 AACCCACGAAATGGGCGTGCGGGCACTTAGCCGGTCGGAGAGGCAGAATGCGTAAACCGGGGATC
66 AACCCACGAAACGGGCATGCGGACACTCAGCCGGCCGGAGAGGCAGAATGCGTAAACCAGGGATC
27328436 AACGCGGTCCCCCTTGCGTGCTGTCGAT
131 AACGCGGTCCCCCTTGCGTGCTGTCGAT
*
27328464 CCCACTACCACAACCCTCGGTCCGAC-GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
1 CCCACTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* ** ** * *
27328528 AACCCACGGAACGGGCATGCGGATGCTCAGTTGGCCTGAGAGGCAGAATGCGTAAGCCAGGGATC
66 AACCCACGAAACGGGCATGCGGACACTCAGCCGGCCGGAGAGGCAGAATGCGTAAACCAGGGATC
27328593 GGCTTGGTCC
Statistics
Matches: 111, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
157 87 0.78
158 24 0.22
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (158 bp):
CCCACTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
AACCCACGAAACGGGCATGCGGACACTCAGCCGGCCGGAGAGGCAGAATGCGTAAACCAGGGATC
AACGCGGTCCCCCTTGCGTGCTGTCGAT
Found at i:27328602 original size:157 final size:158
Alignment explanation
Indices: 27328306--27328678 Score: 394
Period size: 157 Copynumber: 2.4 Consensus size: 158
27328296 TGCTACCGGC
* * **
27328306 CCCACTACCATAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAATTC
1 CCCACTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * *
27328371 AACCCACGAAATGGGCGTGCGGGCACTTAGCCGGTCGGAGAGGCAGAATGCGTAAACCGGGGATC
66 AACCCACGAAACGGGCATGCGGACACTCAGCCGGCCGGAGAGGCAGAATGCGTAAACCAGGGATC
*
27328436 AACGCGGTCCC-CCTTGCGTGCTGTCGAT
131 AACGCGGTCCCTCC-TGCGTACTGTCGAT
*
27328464 CCCACTACCACAACCCTCGGTCCGAC-GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
1 CCCACTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* ** ** * *
27328528 AACCCACGGAACGGGCATGCGGATGCTCAGTTGGCCTGAGAGGCAGAATGCGTAAGCCAGGGATC
66 AACCCACGAAACGGGCATGCGGACACTCAGCCGGCCGGAGAGGCAGAATGCGTAAACCAGGGATC
** ** * *
27328593 GGCTTGGTCCCTCCTGCGTATTGTTGAT
131 AACGCGGTCCCTCCTGCGTACTGTCGAT
* * * * * ** *
27328621 CCTACTGCCGCAACCTTCGGTCCGGTCT-GATCTTAGAC-TAGGAATGAACTCCGTATGC
1 CCCACTACCACAACCCTCGGTCC-GACTAGGGCTTAGACAT-GGAATGAACTCCCTATGC
27328679 TTAGATTGGG
Statistics
Matches: 178, Mismatches: 33, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
157 125 0.70
158 53 0.30
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CCCACTACCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
AACCCACGAAACGGGCATGCGGACACTCAGCCGGCCGGAGAGGCAGAATGCGTAAACCAGGGATC
AACGCGGTCCCTCCTGCGTACTGTCGAT
Found at i:27328681 original size:26 final size:26
Alignment explanation
Indices: 27328652--27328704 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27328642 CCGGTCTGAT
27328652 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
27328678 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27328704 C
1 C
27328705 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27329090 original size:170 final size:160
Alignment explanation
Indices: 27328861--27329312 Score: 477
Period size: 160 Copynumber: 2.7 Consensus size: 160
27328851 CCGACTGGGG
* *
27328861 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATAAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
27328925 CCGACCAGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCCGGCCCCCCCTGCGTGCTGCCGATCC
65 CCGACC-GAGAGGTAGAATGCGCAAGCC-GGGATCGGCCCGGCCCCCCCT-CGTGCTG-CGAT-C
* * *
27328990 TGCTGCTGGTCCTACTG-TCGCAACCCTCAGT-TTGGTCCGAT
125 --C--C-GATCCTACTGCT-GCAACCCTCAGTCCT-ATCCGAT
* *
27329031 CTTAGACTGGGAATGAACTTTGTATGCCAAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
** * * *
27329096 CGACCGAAGAGGCCGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCT-GTG-TGCTATCCCGA
66 CGACCG-AGAGGTAGAATGCGCAAGCC-GGGATCGGCCCGGCCCCCCCTCGTGCTGCGATCCCGA
* *
27329159 TCCTACTGCTGTAACCCTCGGTCCTATCCGAT
129 TCCTACTGCTGCAACCCTCAGTCCTATCCGAT
* * * *
27329191 CTTAGATTGGGAATGAA-TTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAG
1 CTTAGACTGGGAATGAACTT-TGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * *
27329255 CC-AGCCGGAGAGGTATAATGCGCAAGCCGACGATCGGCCCGGTCCCCCTCTACGTGCT
65 CCGA-CC-GAGAGGTAGAATGCGCAAGCCG-GGATCGGCCCGG-CCCCCCCT-CGTGCT
27329313 ACCGGTCCCA
Statistics
Matches: 242, Mismatches: 28, Indels: 30
0.81 0.09 0.10
Matches are distributed among these distances:
159 4 0.02
160 111 0.46
161 10 0.04
163 4 0.02
164 1 0.00
165 1 0.00
166 3 0.01
167 2 0.01
168 3 0.01
169 2 0.01
170 101 0.42
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (160 bp):
CTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
CGACCGAGAGGTAGAATGCGCAAGCCGGGATCGGCCCGGCCCCCCCTCGTGCTGCGATCCCGATC
CTACTGCTGCAACCCTCAGTCCTATCCGAT
Found at i:27329277 original size:160 final size:157
Alignment explanation
Indices: 27328999--27329534 Score: 463
Period size: 160 Copynumber: 3.4 Consensus size: 157
27328989 CTGCTGCTGG
* * * * *
27328999 TCCTACTG-TCGCAACCCTCAGTTTGGTCCGATCTTAGACTGGGAATGAACTT-TGTATGCCAAA
1 TCCTACTGCT-GCAACCCTCGGTCT-ATCCGATCTTAGATTGGGAATGAA-TTCTGTATGCCTAA
* * *
27329062 GCCAACCCATGAAATGAGCGTACGGGCGCTCAGCCGACC-GAAGAGGCCGAATGCGCAAGCCGGG
63 GCCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGACCAG-AGAGGCAGAATGCGCAAGCCGAG
* *
27329126 GATTGGCCCGGTCCCCCCTGTGTGCTATCCCGA
127 GATCGGCCCGGTCCCCCCTGCGTGCTA--CCGA
* *
27329159 TCCTACTGCTGTAACCCTCGGTCCTATCCGATCTTAGATTGGGAATGAATTCTGTATGCCTAAGT
1 TCCTACTGCTGCAACCCTCGGT-CTATCCGATCTTAGATTGGGAATGAATTCTGTATGCCTAAGC
* * * * * *
27329224 CAACCCACGAAATGAGCGTGCGGGCGCTGAGCC-AGCCGGAGAGGTATAATGCGCAAGCCGACGA
65 CAACCCACGAAATGAGCGTACGGGCGCTCAGCCGA-CCAGAGAGGCAGAATGCGCAAGCCGAGGA
* *
27329288 TCGGCCCGGTCCCCCTCTACGTGCTACCGG
129 TCGGCCCGGTCCCCC-CTGCGTGCTACCGA
* *** * ** * ** * * ** *
27329318 TCCCACTGCCATAACCCTCGATCTGGCTAGGGCTTAGACAT-GGAATGAACTCCCTATACCTAAG
1 TCCTACTGCTGCAACCCTCGGTCTATC-CGATCTTAGA-TTGGGAATGAATTCTGTATGCCTAAG
* * * * * *
27329382 CCAACCCACAAAATGGGCGTACGGGCGCGCAGCC-AGCCAGAGAGGCAGAATACGCAAGCTGAAG
64 CCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGA-CCAGAGAGGCAGAATGCGCAAGCCGAGG
* * * *
27329446 ATTGGCCCGATTCCCTCTGCGTGCTACCGA
128 ATCGGCCCGGTCCCCCCTGCGTGCTACCGA
** * * *
27329476 TCCTGTTGCGGCAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCTGTATGC
1 TCCTACTGCTGCAACCCTCGGT-CTATCCGATCTTAGATTGGGAATGAATTCTGTATGC
27329535 TTAGACTGGG
Statistics
Matches: 298, Mismatches: 68, Indels: 22
0.77 0.18 0.06
Matches are distributed among these distances:
157 1 0.00
158 52 0.17
159 116 0.39
160 118 0.40
161 11 0.04
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (157 bp):
TCCTACTGCTGCAACCCTCGGTCTATCCGATCTTAGATTGGGAATGAATTCTGTATGCCTAAGCC
AACCCACGAAATGAGCGTACGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATC
GGCCCGGTCCCCCCTGCGTGCTACCGA
Found at i:27329544 original size:26 final size:26
Alignment explanation
Indices: 27329508--27329560 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27329498 CCGATCCGAT
*
27329508 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
27329534 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
27329560 C
1 C
27329561 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:27330549 original size:24 final size:24
Alignment explanation
Indices: 27330522--27330571 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
27330512 GTTGTTCTAG
27330522 TGCCCGTACGCTTGTGTTTTAGGC
1 TGCCCGTACGCTTGTGTTTTAGGC
27330546 TGCCCGTACGCTTGTGTTTTAGGC
1 TGCCCGTACGCTTGTGTTTTAGGC
27330570 TG
1 TG
27330572 ACTTAGGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.08, C:0.24, G:0.30, T:0.38
Consensus pattern (24 bp):
TGCCCGTACGCTTGTGTTTTAGGC
Found at i:27336122 original size:26 final size:26
Alignment explanation
Indices: 27336084--27336136 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27336074 GGCTCAAAAT
27336084 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27336110 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
27336136 C
1 C
27336137 CTAAGCAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27336877 original size:26 final size:26
Alignment explanation
Indices: 27336800--27336870 Score: 117
Period size: 26 Copynumber: 2.7 Consensus size: 26
27336790 TCCGATCTGA
27336800 TCTTAGAC-TAGGAATGAACTCCGTAT
1 TCTTAGACAT-GGAATGAACTCCGTAT
*
27336826 ACTTAGACATGGAATGAACTCCGTAT
1 TCTTAGACATGGAATGAACTCCGTAT
27336852 TCTTAGACATGGAATGAAC
1 TCTTAGACATGGAATGAAC
27336871 AACGTATGCC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
26 41 0.98
27 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (26 bp):
TCTTAGACATGGAATGAACTCCGTAT
Found at i:27337246 original size:158 final size:159
Alignment explanation
Indices: 27336853--27337351 Score: 487
Period size: 159 Copynumber: 3.2 Consensus size: 159
27336843 ACTCCGTATT
** *
27336853 CTTAGACATGGAATGAACAACGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
** * * * ** *
27336918 CGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCAACCCGATCCCCCTCTGTGTGCTGTCGATCC
66 CGATAAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCAATCCCCCTCTGCATGCTGCCGATCC
* * * * *
27336983 TGCTGCCGCAACCCTTGGTCCGATCTGAT
131 CGCTGCCACAACCCTCGGTCCGAGCTGAG
* * * *
27337012 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
27337076 CCGACTGA-AGAGGCATAATGCGCAAGCCGGGGATCAGCCCAATCCCCCTCTGCATGCTGCC-AG
65 TCGA-TAAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCAATCCCCCTCTGCATGCTGCCGA-
* *
27337139 TCCCGCTG-TACAACCCTCGGTCCG-GCTGGGG
128 TCCCGCTGCCACAACCCTCGGTCCGAGCT-GAG
* * * *
27337170 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * ** * *
27337235 CGGTAAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGAT-CCCC-CTGCGTGCTGTCGATCC
66 CGATAAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCAATCCCCCTCTGCATGCTGCCGATCC
* ** * * *
27337298 TGCTATCACAACCCTC-GT-CGATCCGAT
131 CGCTGCCACAACCCTCGGTCCGAGCTGAG
*
27337325 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
27337352 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 52, Indels: 24
0.79 0.15 0.07
Matches are distributed among these distances:
154 1 0.00
155 27 0.10
156 19 0.07
157 18 0.06
158 101 0.36
159 111 0.40
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGATAAGAGAGGCAGAATGCGCAAGCCGGGGATCAACCCAATCCCCCTCTGCATGCTGCCGATCC
CGCTGCCACAACCCTCGGTCCGAGCTGAG
Found at i:27337361 original size:26 final size:26
Alignment explanation
Indices: 27337325--27337377 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27337315 TCGATCCGAT
*
27337325 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
*
27337351 CTTAGACTGGGGATGAACTCCACATG
1 CTTAGACTGGGAATGAACTCCACATG
27337377 C
1 C
27337378 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:27337494 original size:181 final size:180
Alignment explanation
Indices: 27337169--27337524 Score: 439
Period size: 181 Copynumber: 2.0 Consensus size: 180
27337159 TCCGGCTGGG
* * *
27337169 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
* ** * *
27337234 TCGGTAAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCTGCGTGCTGTCGATCCT
66 CCGACAAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCTACGTGCTATCGATCCT
*
27337299 GCTATCACAACCCTCGTCGATCCGATCTTAGACTGGGAATGAACTCCATAT
131 GCTATCACAACCCTCGTCGAT-CGATCTTAGACTGGAAATGAACTCCATAT
* * * *
27337350 GCTTAGAC-TGGGGATGAACTCCAC-ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGGTC
1 GCTTAGACAT-GGAATGAACTCC-CTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTC
** * * * *
27337413 AGCCGACCGGAGAGGTAGAATGTGCAAGCCGGGGATC-AGCCTGGTCCCCCTACGTGCTATCGAT
64 AGCCGACAAGAGAGGCAGAATGCGCAAGCCAGGGATCGA-CCTGATCCCCCTACGTGCTATCGAT
* * ** *
27337477 TCTGCTGTCGTAACCCTCGTCGATCGATCTTAGACTGTAAATGAACTC
128 CCTGCTATCACAACCCTCGTCGATCGATCTTAGACTGGAAATGAACTC
27337525 TGTATGCATA
Statistics
Matches: 148, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
180 24 0.16
181 123 0.83
182 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (180 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAG
CCGACAAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCTACGTGCTATCGATCCT
GCTATCACAACCCTCGTCGATCGATCTTAGACTGGAAATGAACTCCATAT
Found at i:27337775 original size:493 final size:497
Alignment explanation
Indices: 27336827--27337838 Score: 1210
Period size: 493 Copynumber: 2.0 Consensus size: 497
27336817 ACTCCGTATA
* * **
27336827 CTTAGACAT-GGAATGAACTCCGTATTCTTAGACATGGAATGAACAACGTATGCCTAAGCCAACC
1 CTTAGAC-TGGGAATGAACTCCATATGCTTAGACATGGAATGAACAACACATGCCTAAGCCAACC
* * * * *
27336891 CATGAAACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCAACC
65 CACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACC
* *
27336956 CGATCCCCCTCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCCGATCTGATCTTAGACTG
130 CGATCCCCCTC--TGTGCTATCGATCCTGCTGCCGCAACCCTTCGTCCGATCTGATCTTAGACTG
* * **
27337021 GGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGACTGAAG
193 GAAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCCGACCAAAG
**
27337086 AGGCATAATGCGCAAGCCGGGGATCAGCCCAATCCCCCTCTGCATGCTGCCAGTCCCGCTGTACA
258 AGGCATAAT-CGCAAGCCGGGGATCAGCCCAATCCCCCTCTGCATGCTGCCAGTCCCGCTCCACA
*
27337151 ACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC
322 ACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC
* ** ** * * *
27337216 GGGTGTGCGGGCGCTCAGTCGGTAAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCC
387 GGGCGTGCGGGCGCTCAACCGACAAGAGAGGCAGAATCCGCAAGCCAAGGATCGACCCGATCCCC
* *
27337281 CTGCGTGCTGTCGATCCTGCTATCACAACCCTC-GTC-GATCCGAT
452 CTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCTGATCCGAT
* ** *
27337325 CTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGGATGAACTCCACATGCCTAAGTCAACC
1 CTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACAACACATGCCTAAGCCAACC
* * * * *
27337389 CACGAAACGAGCGTACGGGCGGTCAGCCGACCGGAGAGGTAGAATGTGCAAGCCGGGGATCAGCC
65 CACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACC
* * * * * *
27337454 TGGTCCCCCTAC-GTGCTATCGATTCTGCTGTCGTAACCC-TCGT-CGATC-GATCTTAGACTGT
130 CGATCCCCCT-CTGTGCTATCGATCCTGCTGCCGCAACCCTTCGTCCGATCTGATCTTAGACTGG
* *
27337515 AAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGTGCAGGCGCTTAGCC-AGCCAA
194 AAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGC--GTGCAGGCGCTGAGCCGA-CCAA
** * * *
27337579 AGAGGCATAAT-GCAAGCCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTG-CGGTCCCGTTACCA
256 AGAGGCATAATCGCAAGCCGGGGATCAGCCCAATCCCCCTCTGCATGCTGCCAGTCCCGCT-CCA
* * **
27337642 CAACCCTC-ATTCGG-TTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAAGCCAACCCATGA
320 CAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT-AAGCCAACCCACAA
* ** *
27337705 AACGAGCATGCGTGCTGGCGCTCAACCGACCGGAGA-GCAGAATCCGCAA-CCAAGGATCGGCCC
384 AACG-G---GCGTGCGGGCGCTCAACCGACAAGAGAGGCAGAATCCGCAAGCCAAGGATCGACCC
** * *
27337768 G-TCCCCCTACGTGCTGTCGATCCTTTTGCCGCAACCCTCAGTCTGATCCGAT
445 GATCCCCCTACGTGCTGTCGATCCTGCTACCACAACCCTCAGTCTGATCCGAT
*
27337820 CTTAGACTGGGAATAAACT
1 CTTAGACTGGGAATGAACT
27337839 TTGTATGCCC
Statistics
Matches: 437, Mismatches: 63, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
491 33 0.08
492 28 0.06
493 127 0.29
494 21 0.05
495 68 0.16
496 42 0.10
497 2 0.00
498 115 0.26
499 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (497 bp):
CTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACAACACATGCCTAAGCCAACCC
ACGAAACGAGCGTACGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCAACCC
GATCCCCCTCTGTGCTATCGATCCTGCTGCCGCAACCCTTCGTCCGATCTGATCTTAGACTGGAA
ATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGAGCCGACCAAAGAGG
CATAATCGCAAGCCGGGGATCAGCCCAATCCCCCTCTGCATGCTGCCAGTCCCGCTCCACAACCC
TCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGC
GTGCGGGCGCTCAACCGACAAGAGAGGCAGAATCCGCAAGCCAAGGATCGACCCGATCCCCCTAC
GTGCTGTCGATCCTGCTACCACAACCCTCAGTCTGATCCGAT
Found at i:27338142 original size:319 final size:309
Alignment explanation
Indices: 27337350--27338165 Score: 853
Period size: 315 Copynumber: 2.6 Consensus size: 309
27337340 AACTCCATAT
* * * *
27337350 GCTTAGAC-TGGGGATGAACTCCAC-ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGGTC
1 GCTTAGACAT-GGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-GCTC
* * * *
27337413 AGCCGACCGGAGAGGTAGAATGTGCAAGCCGGGGATC-AGCCTGGTCCCCCTACGTGCTATCGAT
63 AGCCGACCGGAGAAGCAGAATGTGCAAGCCGAGGATCGAGCC-GGTCCCCCTACGTGCTGTCGAT
* * * *
27337477 TCTGCTGTCGTAACCCTCGT-CGATCGATCTTAGACTGTAAATGAACTCTGTATGCATAAGTCAA
127 CCTGCTGTCGCAACCCTCGTCCGATCGATCTTAGACTGGAAATGAACTCTGTATGCACAAGTCAA
* *
27337541 CCCACGAAATGAGCGTGTGCAGGCGCTTAGCCAGCCAAAGAGGCATAATGCAAGCCGGGGATCAG
192 CCCACGAAACGAGCG-GTGCAGGCGCTTAGCCAGCCAAAAAGGCATAATGCAAGCCGGGGATCAG
* * * *
27337606 CCCGGTCCCCCTCTGCGTGCTGCGGTCCCGTTACCACAACCCTCATTCGGTTGG
256 CCCGGTCCCCCTCTGCGTGCTGCGGTCCCGCTACCACAACCCTCATCCGCTAGG
* *
27337660 GCTTAGACATGGAATGAACTCCCTATGCCTAAAGCCAACCCATGAAACGAGCATGCGTGCTGGCG
1 GCTTAGACATGGAATGAACTCCCTATGCCT-AAGCCAACCCACGAAAC--G-A-GCGTGC-GGGG
* ** * *
27337725 CTCAACCGACCGGAG-AGCAGAATCCGCAA-CCAAGGATCG-GCCCGTCCCCCTACGTGCTGTCG
60 CTCAGCCGACCGGAGAAGCAGAATGTGCAAGCCGAGGATCGAGCCGGTCCCCCTACGTGCTGTCG
** * * * * * *
27337787 ATCCTTTTGCCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATAAACTTTGTATGCCCAAG
125 ATCCTGCTGTCGCAACCCTC-GTCCGAT-CGATCTTAGACTGGAAATGAACTCTGTATGCACAAG
* * *
27337852 TCAACCCACGAAACGAGC-GTGC-GGC-CGTTGAG-CAGATCAGAAAAAGGCATTATGTGCAAGT
188 TCAACCCACGAAACGAGCGGTGCAGGCGC-TT-AGCCAG--C-CAAAAAGGCA-TA-ATGCAAGC
** *
27337913 CGGGGATTGGCCCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGACTA
246 CGGGGATCAGCCCGGTCCCCCTCTGCGTGCTG-CGGTCCCGCTACCACAACCCTC-ATCCG-CTA
27337978 GG
308 GG
27337980 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGG-CTCAG
* * * * * ** * * *
27338045 TCGGCCAGAGAAGCAGAATGTACAAGCCGAGTATCGATTCGGTCCACCCTGCATGATGTCGATCC
65 CCGACCGGAGAAGCAGAATGTGCAAGCCGAGGATCGAGCCGGTCC-CCCTACGTGCTGTCGATCC
* *
27338110 TGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGAAATGAACTCCGTATGC
129 TGCTGTCGCAACCCTC-GTCCGATC-GATCTTAGACTGGAAATGAACTCTGTATGC
27338166 TTAGACTGAG
Statistics
Matches: 412, Mismatches: 66, Indels: 47
0.78 0.13 0.09
Matches are distributed among these distances:
309 1 0.00
310 25 0.06
311 17 0.04
312 41 0.10
313 19 0.05
314 18 0.04
315 91 0.22
316 16 0.04
317 45 0.11
318 26 0.06
319 80 0.19
320 33 0.08
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (309 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGCTCAGC
CGACCGGAGAAGCAGAATGTGCAAGCCGAGGATCGAGCCGGTCCCCCTACGTGCTGTCGATCCTG
CTGTCGCAACCCTCGTCCGATCGATCTTAGACTGGAAATGAACTCTGTATGCACAAGTCAACCCA
CGAAACGAGCGGTGCAGGCGCTTAGCCAGCCAAAAAGGCATAATGCAAGCCGGGGATCAGCCCGG
TCCCCCTCTGCGTGCTGCGGTCCCGCTACCACAACCCTCATCCGCTAGG
Found at i:27338168 original size:26 final size:26
Alignment explanation
Indices: 27338139--27338191 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27338129 CCGGTCTGAT
27338139 CTTAGACTG-GAAATGAACTCCGTATG
1 CTTAGACTGAG-AATGAACTCCGTATG
*
27338165 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
27338191 C
1 C
27338192 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:27339330 original size:23 final size:24
Alignment explanation
Indices: 27339299--27339350 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
27339289 TCAATGCCTG
27339299 ATGCTAGACT-GGATGAACT-CGT
1 ATGCTAGACTAGGATGAACTCCGT
27339321 ATGCTTAGACTAGGGATGAACTCCGT
1 ATGC-TAGACTA-GGATGAACTCCGT
27339347 ATGC
1 ATGC
27339351 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 4 0.15
23 6 0.23
25 9 0.35
26 7 0.27
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (24 bp):
ATGCTAGACTAGGATGAACTCCGT
Found at i:27340938 original size:26 final size:26
Alignment explanation
Indices: 27340901--27340951 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27340891 GCTCAAAATC
*
27340901 TTAGACTGGGAATGAACTTCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
27340927 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
27340952 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:27341487 original size:25 final size:26
Alignment explanation
Indices: 27341450--27341501 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
27341440 CCGGTCCGAT
27341450 CTTAGACTCGGAATGAACT-CGTATG
1 CTTAGACTCGGAATGAACTACGTATG
27341475 CTTAGACAT-GGAATGAACTACGTATG
1 CTTAGAC-TCGGAATGAACTACGTATG
27341501 C
1 C
27341502 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTACGTATG
Found at i:27341862 original size:159 final size:159
Alignment explanation
Indices: 27341474--27341975 Score: 451
Period size: 159 Copynumber: 3.2 Consensus size: 159
27341464 GAACTCGTAT
* * *
27341474 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACCAG-AGTACAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCA-TACGGGCGCTCA
* * * ** * * * * *
27341538 GCCAGCCGGAGAGGCAGAATGCACAAGCTGGGGACCGGCCTGATCCCCC-CTGCGTGCTGTTGAT
65 GCCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGAT
* * **
27341602 CCTGCTGCCGCAACCCTTGGTCCGATCTGA
130 CCTACTGCCCCAACCCTCAGTCCGATCTGA
* * * * * * * *
27341632 TCTTAGAC-TGGGAATGCACTCCGTATGCCCAAGTCAACCCACAAAACGAGCGTACGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCA
** * * * * * *
27341696 GTTGGCCGAAGAGGCATAATGTGCAAGCCAGGAATCGGCCCGGTCCCCCTCTATGTGCTGTCGGT
65 GCCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGAT
* *
27341761 CCTACTGCCCCAACCCTCAGTCTGA-CTAGG
130 CCTACTGCCCCAACCCTCAGTCCGATCT-GA
* * * *
27341791 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
** * * * **
27341856 CCGGCCGGAGAGAAAAAATACGCAAGCCAGGGATCGGCTCGGT-CCCC-CTGCGTGCTACCGATC
66 CCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATC
* * **
27341919 CTACTACCGCAACCCTCAGTCCGATCCAA
131 CTACTGCCCCAACCCTCAGTCCGATCTGA
* *
27341948 TCTTAGAC-TAGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
27341976 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 70, Indels: 15
0.76 0.20 0.04
Matches are distributed among these distances:
156 1 0.00
157 56 0.21
158 93 0.35
159 116 0.43
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
CCGGCCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTACGTGCTGTCGATC
CTACTGCCCCAACCCTCAGTCCGATCTGA
Found at i:27341990 original size:26 final size:26
Alignment explanation
Indices: 27341949--27342001 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27341939 CCGATCCAAT
27341949 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
* *
27341975 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
27342001 C
1 C
27342002 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:27342597 original size:11 final size:11
Alignment explanation
Indices: 27342581--27342613 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
27342571 CGATTAGGCT
27342581 CTCCGACGATG
1 CTCCGACGATG
27342592 CTCCGACGATG
1 CTCCGACGATG
*
27342603 CTCCGAGGATG
1 CTCCGACGATG
27342614 GTGCCCCATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:27342721 original size:26 final size:26
Alignment explanation
Indices: 27342682--27342735 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
27342672 TGGCTCAAAA
*
27342682 GCTTAGACTGGGAATGAACTCTGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
27342708 GCTTAGACAT-GGAATGAACTCCGTAT
1 GCTTAGAC-TGGGAATGAACTCCGTAT
27342734 GC
1 GC
27342736 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:27343233 original size:25 final size:26
Alignment explanation
Indices: 27343184--27343235 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
27343174 CTGGTTCGAT
* *
27343184 CTTACACTGGGAATGACCTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
27343210 CTTAAACTGGG-ATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
27343235 C
1 C
27343236 CTAGGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:27343708 original size:366 final size:357
Alignment explanation
Indices: 27343000--27343721 Score: 754
Period size: 366 Copynumber: 2.0 Consensus size: 357
27342990 TTCGGTCTCG
* * * *
27343000 CTGCCACAACCCTCGATCCGATTGGGGCTTGGACATGGAATGAACTCCCTATGCCTAAGCTAACC
1 CTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
* ** * * * * *
27343065 CACGAAGTGGGCGTGCGGGTGCTCAGCCGGCTGAAGAGGCAGAATATGCAAGCCGGGGATCGGCC
66 AACGAAACGAGCGTGCGGGCGCTCAGCAGGCTGAAGAGGCAAAATACGCAAGCCGGGGATCGGCC
* * * *
27343130 CGGTACCCTTGCGTGCTATCGATCCTACTGCCACAACCCTCGGTCTGGTTCGATCTTACACTGGG
131 CGATACCCCTACGTGCTATCGATCCTACTGCCACAACCCTCGGTCTGGTCCGATCTTACACTGGG
* * * * * *
27343195 AATGACCTCCGTATGCTTAAACTGGGATGAACTCTGTATGCCTAGGTCAACCCACGAAACGAGCA
196 AATGAACTCCATATGCTTAAACTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAACA
** * *
27343260 TTTGGGCACTCAGCCAACCGGAGAGGCCGGCCGGAGAGACATAATGCATAAGCCGAGGATCACCC
261 TGCGGGCACTCAGCCAACC-GAGA--------GGAGAGACAGAATGCATAAGCCGAGGACCACCC
* *
27343325 CGATCCCCCTTTACGTGCTGCCGATCCTGCTACCAGTCCTA
317 CGATCCCCCTCTACGTGCTGCCAATCCTGCTACCAGTCCTA
27343366 CTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
1 CTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
* * * *
27343431 AACGAAACGAGCGTGCGGGCGCTCAGCTAGTC-GGAGAGGCAAAATGCGCAAGCTGGGGATCGGC
66 AACGAAACGAGCGTGCGGGCGCTCAGC-AGGCTGAAGAGGCAAAATACGCAAGCCGGGGATCGGC
* *
27343495 CCGATCCCCCCTACGTGCTGTCGATCCTGCTACTAGTCCTGCTACCGTAACCCTCGGTCTGGTCC
130 CCGAT-ACCCCTACGTGCTATCGAT-C--CTACT-G--C--C-A-C--AACCCTCGGTCTGGTCC
* *
27343560 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
182 GATCTTACACTGGGAATGAACTCCATATGCTTAAAC-TGGAATGAACTCTGTATGCCTAAGCCAA
* * * * * * *
27343625 CCCATGAAACGAACGTGCGGGCGCTCAGCCGATC-AGA-GAG-G-CAGAATGCGTAAGCCGGGGA
246 CCCACGAAACGAACATGCGGGCACTCAGCCAACCGAGAGGAGAGACAGAATGCATAAGCCGAGGA
** * * *
27343686 CCGGCTCGGTCCCCC-CTACGTGCTGTCAATCCTGCT
311 CCACCCCGATCCCCCTCTACGTGCTGCCAATCCTGCT
27343722 GCAGCAACCC
Statistics
Matches: 293, Mismatches: 48, Indels: 30
0.79 0.13 0.08
Matches are distributed among these distances:
366 132 0.45
367 44 0.15
368 2 0.01
369 3 0.01
370 5 0.02
371 1 0.00
373 1 0.00
375 1 0.00
376 1 0.00
377 1 0.00
378 3 0.01
379 48 0.16
380 51 0.17
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.20
Consensus pattern (357 bp):
CTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
AACGAAACGAGCGTGCGGGCGCTCAGCAGGCTGAAGAGGCAAAATACGCAAGCCGGGGATCGGCC
CGATACCCCTACGTGCTATCGATCCTACTGCCACAACCCTCGGTCTGGTCCGATCTTACACTGGG
AATGAACTCCATATGCTTAAACTGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAACA
TGCGGGCACTCAGCCAACCGAGAGGAGAGACAGAATGCATAAGCCGAGGACCACCCCGATCCCCC
TCTACGTGCTGCCAATCCTGCTACCAGTCCTA
Found at i:27344100 original size:26 final size:26
Alignment explanation
Indices: 27344064--27344116 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27344054 TTGGTCTAAT
*
27344064 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
27344090 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27344116 C
1 C
27344117 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27344435 original size:26 final size:26
Alignment explanation
Indices: 27344406--27344458 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27344396 CCGGTCTGAT
27344406 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
27344432 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
27344458 C
1 C
27344459 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:27345165 original size:26 final size:26
Alignment explanation
Indices: 27345126--27345177 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27345116 TGGCTCAAAC
27345126 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
27345152 GCTTAGACAT-GGAATGAACTCCGTAT
1 GCTTAGAC-TGGGAATGAACTCCGTAT
27345178 TACTAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:27345899 original size:26 final size:26
Alignment explanation
Indices: 27345848--27345900 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
27345838 CCAGTCCGAT
*
27345848 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCTATATG
* *
27345874 CTTAGACTGGGGATGAACT-TCATATG
1 CTTAGAATGGGAATGAACTCT-ATATG
27345900 C
1 C
27345901 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCTATATG
Found at i:27346132 original size:36 final size:36
Alignment explanation
Indices: 27346085--27346153 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
27346075 TGAAGTTTCG
27346085 TGCCACGCCAATGCCATTTTTATGGCTTGTAAATTC
1 TGCCACGCCAATGCCATTTTTATGGCTTGTAAATTC
*
27346121 TGCCATGCCAATGCCATTTTTATGGCTTGTAAA
1 TGCCACGCCAATGCCATTTTTATGGCTTGTAAA
27346154 AGTGCGGCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.36
Consensus pattern (36 bp):
TGCCACGCCAATGCCATTTTTATGGCTTGTAAATTC
Found at i:27346257 original size:26 final size:26
Alignment explanation
Indices: 27346206--27346258 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27346196 GGCTCAAACT
* *
27346206 CTTAGACTTGGAATGAACTGCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
27346232 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
27346258 C
1 C
27346259 CTAACCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:27346585 original size:26 final size:26
Alignment explanation
Indices: 27346549--27346601 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27346539 CCGGTCTGAT
27346549 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
27346575 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27346601 C
1 C
27346602 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27347293 original size:26 final size:26
Alignment explanation
Indices: 27347264--27347316 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27347254 CCGGTCTGAT
* *
27347264 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
27347290 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
27347316 C
1 C
27347317 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:27347672 original size:26 final size:26
Alignment explanation
Indices: 27347643--27347695 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27347633 TCGATCCGAT
27347643 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
27347669 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27347695 C
1 C
27347696 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27348128 original size:879 final size:879
Alignment explanation
Indices: 27346754--27348420 Score: 2066
Period size: 879 Copynumber: 1.9 Consensus size: 879
27346744 AGGTCCGGTC
* *
27346754 CGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTGGACATGGAATGAACTCCGTATGCCTA
1 CGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTA
* * *
27346819 AGCCAACCCACGAAACAAGCATGCGAGCACTCAGCCGATTGAAAAGGCAGAATGCGCAAGCCGAG
66 AGCCAACCCACGAAACAAGCATACGAGCACTCAGCCGATCGAAAAGGCAGAATGCACAAGCCGAG
* * **
27346884 GATCGGCCCAGTCTGCCCTACGGGCTGTTGATCCTGCTACCGTAACCCCCAGACCGATCCGATCT
131 GATCGGCCCAGTC-GCCCTACGGACTATTGATCCTGCTACCACAACCCCCAGACCGATCCGATCT
* * * ** ** *
27346949 TAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACAAGTGTTTGGGCATTGTGCCA
195 TAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCATGCGGGCATTGAGCCA
* * *
27347014 GTCGGAAAGGCATAATGCACAAGCTGGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCTCA
260 GACGGAAAGGCATAATGCACAAGCTGCGGATCAGCCCGATCCCCCTCTGCATGCTGCCGATCTCA
* * * * *
27347079 CTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAGTGAACTCCCTGTGCCTAAGCCAACC
325 CTACCACAACCCTCGGTCCGGCTGGCGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACC
* * * * * * * *
27347144 CATGAAATAGGCATGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGTGCAAGCCAAGGATCGGCT
390 CATGAAACAGGCATACGGGCACTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACC
* * * * *
27347209 CGATCCCTCTTGCGTGCTACCGATCTTGCTGTCACAACCCTCGGTCCGGTCTGATCTTAGACTGG
455 CGATCCCTCCTACGTGCTACCGATCCTGCTATCACAACCCTCGGTCCAGTCTGATCTTAGACTGG
* *
27347274 GAATGAACTCTGTATGCTTAGAATGGGAATGAA-CTCCGTATGCCTAAGTCAACCCACGAAACGA
520 GAATGAACTCTATATGCTTAGAATGGGAAT-AACCTCCGTATGCCTAAGTCAACACACGAAACGA
* * * * * *
27347338 GCTTACGGGTGCTCAACT-GGCC-GAAGAGGTCGG-TCGGAGAGGCATAATGCGCAAGTCGGGGA
584 GCATACGGGCGCTC-ACTCGGCCAG-AGAGG-CGGACCGAAGAGGCATAATGCGCAAGCCGAGGA
* * * * * *
27347400 TCAGCTCGATCCTTCGT-TGCATGCTGTCGATC-CCATTGCC-AGTCTTGCTACCACAACCCTCG
646 TCAGCCCGATCC-CCCTCTGCATGCTGCCGATCACCA-TGCCGA-TCCTACTACCACAACCCTCG
* *
27347462 ATCTGGCAGGGGCTTAGACATGGAATAAACT-CTTAATGCCTAAGCCAACCCACGAAACGAGCAT
708 ATCCGGCAGGGGCTTAGACATGGAATAAACTCCGT-ATGCCTAAGCCAACCCACGAAACGAGCAT
27347526 ACGGACGCTCAGCCGATCAGAGGGGCAGAATGTGTAAGTCGTGGATCGGCCCAGTCCCCCTACGT
772 ACGGACGCTCAGCCGATCAGAGGGGCAGAATGTGTAAGTCGTGGATCGGCCCAGTCCCCCTACGT
27347591 GCTGTCGATCCTGCTATAGGTCATGTTGTTGTAACCCTCGTTT
837 GCTGTCGATCCTGCTATAGGTCATGTTGTTGTAACCCTCGTTT
*
27347634 CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTA
1 CGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTA
** * * * * * * * *
27347699 AGCCAACCCACGAAATGAGCATATGGGCGCTCAGTCGGTCGAAAAGGC-GAAATGCATAAGCTGG
66 AGCCAACCCACGAAACAAGCATACGAGCACTCAGCCGATCGAAAAGGCAG-AATGCACAAGCCGA
*** * * * * * *
27347763 GGA-CTGGCTTGGTC-CCCT-TGTGTACTATTGATCCTGCTGCCACAACCCTCGGTCTCG-TCTG
130 GGATC-GGCCCAGTCGCCCTACG-G-ACTATTGATCCTGCTACCACAACCCCCAGAC-CGATCCG
* * * *
27347824 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTTAACCCACAAAACGAGCATGCGGGCGTTGA
191 ATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCATGCGGGCATTGA
* ** *
27347889 G-CAGACTGAAGAGGCATAATGCGTAAGCTGCGGATCAGCCCGATCCCCCTCTGCATGCTGCCGG
256 GCCAGACGGAA-AGGCATAATGCACAAGCTGCGGATCAGCCCGATCCCCCTCTGCATGCTGCCGA
* *
27347953 TCTCGCTGCCACAACCCTCGGTCCGGCTGGCGCTTAGACATGGAATAAACTCCCTATGCCTAAGC
320 TCTCACTACCACAACCCTCGGTCCGGCTGGCGCTTAGACATGGAATAAACTCCCTATGCCTAAGC
* * * * *
27348018 CAACCCATGAAACAGGCGTATGGGCACTCAGCCAACCGGAGAGGCAGAATGCGCCAGTCGAGGAT
385 CAACCCATGAAACAGGCATACGGGCACTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCAAGGAT
* * * *
27348083 CGACCCGGTCCCTCCTACGTGCTGCCGATCCTGCTATCGCAACCCTCGGTCTAGTCTGATCTTAG
450 CGACCCGATCCCTCCTACGTGCTACCGATCCTGCTATCACAACCCTCGGTCCAGTCTGATCTTAG
* * * *
27348148 ACTGGGAATGAACTCTATATGCTTAGACTGGGGATAACCTCCGTATGCCTAAGTCAACAGATGAA
515 ACTGGGAATGAACTCTATATGCTTAGAATGGGAATAACCTCCGTATGCCTAAGTCAACACACGAA
* * * *
27348213 ACGAGCATGCGGGCGTTCAGTCGGCCAGAGAGGCGGACCGAAGAGGCATAATGCGTAAGCCGAGG
580 ACGAGCATACGGGCGCTCACTCGGCCAGAGAGGCGGACCGAAGAGGCATAATGCGCAAGCCGAGG
* * * * * * * *
27348278 ATCAGCCCGGTCCCCCTCTGCGTGTTGCCGATCACGATGTCGATCCTACTACCTCAACCCTTGGT
645 ATCAGCCCGATCCCCCTCTGCATGCTGCCGATCACCATGCCGATCCTACTACCACAACCCTCGAT
* * * *
27348343 CCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAGCATGCG
710 CCGGCAGGGGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACG
**
27348408 GGTGCTCAGCCGA
775 GACGCTCAGCCGA
27348421 CTGGAGAGGT
Statistics
Matches: 658, Mismatches: 115, Indels: 29
0.82 0.14 0.04
Matches are distributed among these distances:
877 1 0.00
878 21 0.03
879 508 0.77
880 128 0.19
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (879 bp):
CGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTA
AGCCAACCCACGAAACAAGCATACGAGCACTCAGCCGATCGAAAAGGCAGAATGCACAAGCCGAG
GATCGGCCCAGTCGCCCTACGGACTATTGATCCTGCTACCACAACCCCCAGACCGATCCGATCTT
AGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACAAGCATGCGGGCATTGAGCCAG
ACGGAAAGGCATAATGCACAAGCTGCGGATCAGCCCGATCCCCCTCTGCATGCTGCCGATCTCAC
TACCACAACCCTCGGTCCGGCTGGCGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCC
ATGAAACAGGCATACGGGCACTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCC
GATCCCTCCTACGTGCTACCGATCCTGCTATCACAACCCTCGGTCCAGTCTGATCTTAGACTGGG
AATGAACTCTATATGCTTAGAATGGGAATAACCTCCGTATGCCTAAGTCAACACACGAAACGAGC
ATACGGGCGCTCACTCGGCCAGAGAGGCGGACCGAAGAGGCATAATGCGCAAGCCGAGGATCAGC
CCGATCCCCCTCTGCATGCTGCCGATCACCATGCCGATCCTACTACCACAACCCTCGATCCGGCA
GGGGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGACGCT
CAGCCGATCAGAGGGGCAGAATGTGTAAGTCGTGGATCGGCCCAGTCCCCCTACGTGCTGTCGAT
CCTGCTATAGGTCATGTTGTTGTAACCCTCGTTT
Found at i:27348942 original size:183 final size:183
Alignment explanation
Indices: 27348570--27348953 Score: 404
Period size: 183 Copynumber: 2.1 Consensus size: 183
27348560 TCTTACACTG
* * *
27348570 GGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAATGAA
1 GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCATGAACGAA
* * * * * *
27348635 CGTGTGGGTGCTCAGCCGCCGAAGAAGCTTAATGAGTAAGCTGGGGATCAGCCCGATCCCCCTCT
66 CGTGCGAGTGCTCAGCCGCCGAAGAAGCTGAATGAGCAAGCCGGGGACCAGCCCGATCCCCCTCT
* * * * *
27348700 GCGTGCTGCCGATCCAGCTGTCGTAACCTTCGGACCACTCCGATCCTAGACTG
131 GCGTACCGCCGATCCAGCTGTCGCAACCCTCGGACCACTCCGATCCTAGACTA
27348753 GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCATGAAACGA
1 GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCATG-AACGA
* * * * * *
27348818 GCGTGCGAGTGCTCAGCCGATCG-A-AATCGTAGAATGCGCAAGCCGGGGACCGGCCCGGT-CCC
65 ACGTGCGAGTGCTCAGCCG-CCGAAGAAGC-T-GAATGAGCAAGCCGGGGACCAGCCCGATCCCC
** * ** * *
27348880 C-CTGCGTACCGTTGATCCTA-CTG-CAGCAACCCTC-GATGCGGTCCGATCTTAGATTA
127 CTCTGCGTACCGCCGATCC-AGCTGTC-GCAACCCTCGGA-CCACTCCGATCCTAGACTA
*
27348936 GGAATGAACTCCATATGC
1 GGAATGAACTCCGTATGC
27348954 CTAAGTCAGC
Statistics
Matches: 166, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
182 3 0.02
183 113 0.68
184 27 0.16
185 23 0.14
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (183 bp):
GGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCATGAACGAA
CGTGCGAGTGCTCAGCCGCCGAAGAAGCTGAATGAGCAAGCCGGGGACCAGCCCGATCCCCCTCT
GCGTACCGCCGATCCAGCTGTCGCAACCCTCGGACCACTCCGATCCTAGACTA
Found at i:27349273 original size:26 final size:26
Alignment explanation
Indices: 27349244--27349296 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27349234 CTGGTCCGAT
* *
27349244 CTTAGATTCTGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
* *
27349270 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
27349296 C
1 C
27349297 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCGTATG
Found at i:27349635 original size:26 final size:26
Alignment explanation
Indices: 27349597--27349649 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27349587 CCGATCCGAT
27349597 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27349623 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
27349649 C
1 C
27349650 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27349776 original size:195 final size:194
Alignment explanation
Indices: 27349427--27349866 Score: 548
Period size: 195 Copynumber: 2.3 Consensus size: 194
27349417 TCCGACTGGG
* *
27349427 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
* * * *
27349492 CTGGCGGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGGTCCCCCCTGCGTGTTGCTGATCTT
66 CTGGCAGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGATCCCCCCTGCATGCTGCTGATCTT
* * * * *
27349557 GCTACTAGTCCTACTGTTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
131 CCTACTAGTCCTACTATCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACT-CATAT
*
27349622 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGGGCTC-A
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
* * * *
27349685 GTCGGTCAGAGAGGTAGAATGCGTAAG-CTGGGGA-CTAGCCCGATCCCCCCTGCATGCT-CTTG
66 CT-GG-CAGAGAGGCAGAATGCGCAAGTC-GAGGATC-AGCCCGATCCCCCCTGCATGCTGC-TG
* * * *
27349747 ATCTTCCTATTGGTCCTGCTATCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTC
126 ATCTTCCTACTAGTCCTACTATCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTC
*
27349812 GTAT
191 ATAT
* * * * * *
27349816 GCTTAGACATCGAATGAACTCCATACGCCTAAGCCAGCTCATGAAACGAGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
27349867 ATGTGGGCGC
Statistics
Matches: 213, Mismatches: 27, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
193 2 0.01
194 60 0.28
195 151 0.71
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (194 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
CTGGCAGAGAGGCAGAATGCGCAAGTCGAGGATCAGCCCGATCCCCCCTGCATGCTGCTGATCTT
CCTACTAGTCCTACTATCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCATAT
Found at i:27349924 original size:195 final size:196
Alignment explanation
Indices: 27349427--27349938 Score: 475
Period size: 195 Copynumber: 2.6 Consensus size: 196
27349417 TCCGACTGGG
* * * * ** * *
27349427 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGCGCTCAA
1 GCTTAGACATCGAATGAACTCCATACGCCTAAGCCAACCCACGAAACGAGCATGC-GGGGCTCAG
* * * * * * * * *
27349492 CTG-GCGGAGAGGCAGAATGCGCAAGTCGAGGATC-AGCCCGGT-CCCCCCTGCGTGTTGC-TGA
65 CCGACCAGAAAGACAGAATGCGCAAGCCGAGGA-CGAGCCCGATCCCCCCCTGCATGCT-CTTGA
* * * * * * * *
27349553 TCTTGCTACTAGTCCTACTGTTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCC
128 TCTTCCTATTGGTCCTGCTATCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCC
27349618 ATAT
193 ATAT
* * * * *
27349622 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGCTCAGT
1 GCTTAGACATCGAATGAACTCCATACGCCTAAGCCAACCCACGAAACGAGCATGCGGGGCTCAGC
** * ** * * * *
27349687 CGGTCAGAGAGGTAGAATGCGTAAGCTGGGGACTAGCCCGAT-CCCCCCTGCATGCTCTTGATCT
66 CGACCAGAAAGACAGAATGCGCAAGCCGAGGACGAGCCCGATCCCCCCCTGCATGCTCTTGATCT
* *
27349751 TCCTATTGGTCCTGCTATCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACT-CGTA
131 TCCTATTGGTCCTGCTATCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCATA
27349815 T
196 T
* * * * *
27349816 GCTTAGACATCGAATGAACTCCATACGCCTAAGCCAGCTCATGAAACGAGCATGTGGGCGCTTAG
1 GCTTAGACATCGAATGAACTCCATACGCCTAAGCCAACCCACGAAACGAGCATGCGGG-GCTCAG
*
27349881 CCGACC-GAAAAGACAGAATG-GACAAGCCGAGGACCGA-CCCGATCCCCCCCTGCGTGCT
65 CCGACCAG-AAAGACAGAATGCG-CAAGCCGAGGA-CGAGCCCGATCCCCCCCTGCATGCT
27349939 ATGATCCTAC
Statistics
Matches: 263, Mismatches: 46, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
194 66 0.25
195 182 0.69
196 15 0.06
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (196 bp):
GCTTAGACATCGAATGAACTCCATACGCCTAAGCCAACCCACGAAACGAGCATGCGGGGCTCAGC
CGACCAGAAAGACAGAATGCGCAAGCCGAGGACGAGCCCGATCCCCCCCTGCATGCTCTTGATCT
TCCTATTGGTCCTGCTATCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCATA
T
Found at i:27351305 original size:159 final size:159
Alignment explanation
Indices: 27351014--27351309 Score: 443
Period size: 159 Copynumber: 1.9 Consensus size: 159
27351004 TTGCTCAAAA
27351014 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * *
27351079 CCGATCGAAGAGGCAGAATGCGCAAGTCAAGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGGTC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGATC
27351144 CTGCTGCCACAACCCTCGGTCCGACTGGG
131 CTGCTGCCACAACCCTCGGTCCGACTGGG
* *
27351173 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
** * * * * **
27351237 GTCGACCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCTCC-CTGCGTGCTGTTGA
65 ACCGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTCCC-CCTCTACGTGCTGCCGA
27351301 TCCTGCTGC
129 TCCTGCTGC
27351310 TGGTCCTGCT
Statistics
Matches: 122, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
159 119 0.98
160 3 0.02
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.18
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGGTCCCCCTCTACGTGCTGCCGATC
CTGCTGCCACAACCCTCGGTCCGACTGGG
Found at i:27352581 original size:26 final size:26
Alignment explanation
Indices: 27352542--27352593 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27352532 TGGCTCAAAC
27352542 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
27352568 TCTTAGACAT-GGAATGAACTCTGTAT
1 TCTTAGAC-TGGGAATGAACTCCGTAT
27352594 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:27353613 original size:26 final size:26
Alignment explanation
Indices: 27353584--27353636 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27353574 GACTCAAAAT
*
27353584 CTTAGAC-TGGGACTGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
27353610 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27353636 C
1 C
27353637 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27353966 original size:159 final size:157
Alignment explanation
Indices: 27353609--27354110 Score: 397
Period size: 159 Copynumber: 3.2 Consensus size: 157
27353599 AACTCCGTAT
* ** *
27353609 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAG
***
27353674 TCAACCGAAGAGGCAAAATGCACAAGCTGGGGATCACCCCGGTCCCCCTTGCGTGCTATCGATCC
66 TCAACCGAAGAGGCAAAATGCACAAGCCAAGGATCACCCCGGTCCCCCTTGCGTGCTATCGATCC
* * *
27353739 TGCTGCCACAACCTCGATTCAGTCCGA
131 CGCTACCACAACCTCGATCCAGTCCGA
* ** * *
27353766 TCTTAGAC-TGGGAATGAACTCCGTATGCAAAAGTCAACCCACGAAACGAGCGTGCGGACGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCA
* * * * * * ** *
27353830 G-CTGATCGAAGAGGCATAATGCGCAAGCCAAGGATCAGCCTGGTTGCCCTCTGCGTGCTGTCGA
65 GTC-AACCGAAGAGGCAAAATGCACAAGCCAAGGATCACCCCGGTCCCCCT-TGCGTGCTATCGA
** *
27353894 TCCCGCTACCACAACCCTCGATCC-GATTGGG
128 TCCCGCTACCACAA-CCTCGATCCAG-TCCGA
* * * * * *
27353925 GCTTAGACATTGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTTA
1 GCTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCA
** * * * * * * ** *
27353989 GTC-GGCTAGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCAGTCCCCCCTGCGTGCTGCCAA
65 GTCAACCGA-AGAGGCAAAATGCACAAGCCAAGGATC-ACCCCGGTCCCCCTTGCGTGCTATCGA
* * * * *
27354052 TCCTGCTGCCGCAACCCTC-AGTCTAGACCGA
128 TCCCGCTACCACAA-CCTCGA-TCCAGTCCGA
* * *
27354083 TCTTAGACTTGGAATGAACTCCATATGC
1 GCTTAGACATGGAATGAACTCCGTATGC
27354111 TTAGACTGGG
Statistics
Matches: 272, Mismatches: 60, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
156 2 0.01
157 92 0.34
158 80 0.29
159 94 0.35
160 4 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGACGCTCAG
TCAACCGAAGAGGCAAAATGCACAAGCCAAGGATCACCCCGGTCCCCCTTGCGTGCTATCGATCC
CGCTACCACAACCTCGATCCAGTCCGA
Found at i:27354125 original size:26 final size:26
Alignment explanation
Indices: 27354084--27354135 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27354074 CTAGACCGAT
*
27354084 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
27354110 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27354136 TTTAAGTGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27354893 original size:160 final size:159
Alignment explanation
Indices: 27354476--27354980 Score: 570
Period size: 159 Copynumber: 3.2 Consensus size: 159
27354466 AACTCTGTAT
* *
27354476 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
27354541 CCGATCGGAGAGGCAGAATGCACAAGTCGAGGACCGGCCCGGTCCCCGCT-TGCGTGCTATCGAT
66 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCC-CTCTGCGTGCTATCGAT
* *
27354605 CCTGCTGTCGCAACCCTCGGTCCGGTCTGA
130 CCTGCTGCCACAACCCTCGGTCCGGTCTGA
* * * * * * *
27354635 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGACACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * *
27354699 GCCGGTCGGAGAGGCATAATTTGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTACCGGT
65 GCCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGAT
* *
27354764 CCCGCTGCCACAACCCTCGGTCCGG-CTAGGG
130 CCTGCTGCCACAACCCTCGGTCCGGTCT--GA
* *
27354795 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * ** * *
27354860 TCGGTAGAAGAGGTAGAATGCGTAAGTCGGGGATTAGCCCGGTCCCCC-CTACGTGCTGTCGATC
66 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATC
* * * *
27354924 TTTCTGCCACAACCCTCGGTCCGATCCGA
131 CTGCTGCCACAACCCTCGGTCCGGTCTGA
* *
27354953 TCTTAGAC-TGGGAATGAACTCCGCATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
27354981 TTAGACTGGG
Statistics
Matches: 283, Mismatches: 56, Indels: 15
0.80 0.16 0.04
Matches are distributed among these distances:
157 1 0.00
158 29 0.10
159 159 0.56
160 93 0.33
161 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATC
CTGCTGCCACAACCCTCGGTCCGGTCTGA
Found at i:27355006 original size:26 final size:26
Alignment explanation
Indices: 27354954--27355006 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27354944 CCGATCCGAT
*
27354954 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
* *
27354980 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
27355006 C
1 C
27355007 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:27355321 original size:26 final size:26
Alignment explanation
Indices: 27355292--27355344 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27355282 CCGATCTGAT
27355292 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
27355318 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27355344 C
1 C
27355345 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27356024 original size:158 final size:157
Alignment explanation
Indices: 27355685--27356026 Score: 456
Period size: 157 Copynumber: 2.2 Consensus size: 157
27355675 ACTCCGTATG
* * *
27355685 CTTAGACAT-GGAATAAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTAAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTAAG
* * *
27355749 CCGGTCGAAGAGGTAGAATGCGCAAGCCGGAGACTGGCCCCATCCCCCTACGTGCTGTTGATCCT
65 CCGGCCGAAGAGGTAGAATGCACAAGCCGGAGACTGGCCCCATCCCCCTACGTGCTGTCGATCCT
*
27355814 GCTGTAGCAACCCTCAGTCCGATCTGAT
130 GCTATAGCAACCCTCAGTCCGATCTGAT
* * *
27355842 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTAAGC
* * * * *
27355907 TGGCCGGAGA-GTGAGAATGCACAAGCCGGTGA-TCGGCCCGATCCCCCCTGCGTGCTGTCGATC
66 CGGCCGAAGAGGT-AGAATGCACAAGCCGGAGACT-GGCCCCAT-CCCCCTACGTGCTGTCGATC
* * * *
27355970 CTGCTATCGTAACCCTCGGTCCGGTCTGAT
128 CTGCTATAGCAACCCTCAGTCCGATCTGAT
27356000 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTTCGTATGC
27356027 TTAGACATGG
Statistics
Matches: 161, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
156 4 0.02
157 88 0.55
158 69 0.43
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTAAGC
CGGCCGAAGAGGTAGAATGCACAAGCCGGAGACTGGCCCCATCCCCCTACGTGCTGTCGATCCTG
CTATAGCAACCCTCAGTCCGATCTGAT
Found at i:27356038 original size:26 final size:26
Alignment explanation
Indices: 27356000--27356052 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27355990 CCGGTCTGAT
*
27356000 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27356026 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27356052 C
1 C
27356053 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27356110 original size:341 final size:342
Alignment explanation
Indices: 27355489--27356306 Score: 938
Period size: 341 Copynumber: 2.4 Consensus size: 342
27355479 CCGGCTGGGG
* * * *
27355489 CTTAGACAT-GGAATGGACTCTGTATGCCTAAGCCAACCCATGAAACAAGCGTGTTG-GCGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTG-CGAGCGCTCA
*
27355552 GCCAGTCAGAGAGGCAGAATGAGCAAGCCGGAGATCGGCCCGATCCCCCCTACGTGCTGTCGATC
64 GCCAGCCAGAGAGGCAGAATGAGCAAGCCGGAGATCGGCCCGATCCCCCCTACGTGCTGTCG---
* *
27355617 CTACTGCTGGTCCTGCTATCGTAACCCTCAGTCTGGTTTGATCTTAGACTAGGAATGAACTCCGT
126 C-A------GTCCTGCTATCGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGT
** ** *
27355682 ATGCTTAGACATGGAATAAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTA
184 ATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTA
* * * * *
27355747 AGCCGGTCGAAGAGGTAGAATGCGCAAGCCG-GAGACTGGCCCCATCCC-CCTACGTGCTGTTGA
249 AGCCAGCCGAAGAGGCAGAATGCGCAAGCCGAG-GACTAGCCCCATCCCTCCTACGTGCTGTCGA
27355810 TCCTGCTGTAG-CAACCC-TCAGTCCGATCTGAT
313 -CC--CTGTAGCCAACCCAT-AGTCCGATCTGAT
*
27355842 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGAGCGCTCAGC
** * * *
27355907 TGGCCGGAGAGTG-AGAATGCA-CAAGCCGGTGATCGGCCCGATCCCCCCTGCGTGCTGTCG-A-
66 CAGCCAGAGAG-GCAGAATG-AGCAAGCCGGAGATCGGCCCGATCCCCCCTACGTGCTGTCGCAG
* * *
27355968 TCCTGCTATCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
129 TCCTGCTATCGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC
* * * *
27356033 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGTTCAGCCAGCCGG
194 ATGGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTAAGCCAGCCGA
* *
27356098 AGAGGCAGAATGCGCAAGCCGAGGACTAGCCCGATCCCTCTTACGTGCTGTCGACCCTGTAGCCA
259 AGAGGCAGAATGCGCAAGCCGAGGACTAGCCCCATCCCTCCTACGTGCTGTCGACCCTGTAG-C-
* *
27356163 CAACCCATAGTTCGGTCTGAT
322 CAACCCATAGTCCGATCTGAT
* * * *
27356184 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTCCGAGCGCTGAGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGAGCGCTCAGC
* * * * * * * *
27356249 CGGTCGGAGAGGCATAATGCGCAAGTCAGG-GATCAGCCCGGTCCCCCTCTACGTGCTG
66 CAGCCAGAGAGGCAGAATGAGCAAG-CCGGAGATCGGCCCGATCCCCC-CTACGTGCTG
27356307 CCGGTCCTAC
Statistics
Matches: 404, Mismatches: 47, Indels: 38
0.83 0.10 0.08
Matches are distributed among these distances:
339 6 0.01
341 150 0.37
342 124 0.31
343 13 0.03
348 1 0.00
352 2 0.00
353 106 0.26
354 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (342 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGAGCGCTCAGC
CAGCCAGAGAGGCAGAATGAGCAAGCCGGAGATCGGCCCGATCCCCCCTACGTGCTGTCGCAGTC
CTGCTATCGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACAT
GGAATAAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGCTAAGCCAGCCGAAG
AGGCAGAATGCGCAAGCCGAGGACTAGCCCCATCCCTCCTACGTGCTGTCGACCCTGTAGCCAAC
CCATAGTCCGATCTGAT
Found at i:27356151 original size:184 final size:184
Alignment explanation
Indices: 27355842--27356210 Score: 462
Period size: 184 Copynumber: 2.0 Consensus size: 184
27355832 CCGATCTGAT
* ** *
27355842 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGAGCGCTCAGC
** * * *
27355907 TGGCCGGAGAGTGAGAATGCACAAGCCGGTGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
66 CAGCCGGAGAGTGAGAATGCACAAGCCGGTGATCAGCCCGATCCCCCCTACGTGCTGTCGACCCT
* ** * *
27355972 GCTA-TCGTAACCC-TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATG
131 G-TAGCCACAACCCAT-AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
27356026 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGCGTTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGAGCGCTCAG
* * *
27356090 CCAGCCGGAGAG-GCAGAATGCGCAAGCCGAG-GA-CTAGCCCGATCCCTCTTACGTGCTGTCGA
65 CCAGCCGGAGAGTG-AGAATGCACAAGCCG-GTGATC-AGCCCGATCCCCCCTACGTGCTGTCGA
*
27356152 CCCTGTAGCCACAACCCATAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
127 CCCTGTAGCCACAACCCATAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
27356210 C
1 C
27356211 CTAAGTCAAC
Statistics
Matches: 159, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
183 4 0.03
184 152 0.96
185 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (184 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTGCGAGCGCTCAGC
CAGCCGGAGAGTGAGAATGCACAAGCCGGTGATCAGCCCGATCCCCCCTACGTGCTGTCGACCCT
GTAGCCACAACCCATAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:27356530 original size:26 final size:26
Alignment explanation
Indices: 27356489--27356541 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27356479 CCGGTTCGAT
*
27356489 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
** *
27356515 CTTAGACTGGGGATGATCTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
27356541 C
1 C
27356542 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:27358984 original size:26 final size:26
Alignment explanation
Indices: 27358947--27358998 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27358937 GCTCAAAATG
*
27358947 TTAGACTAGGAATGAACACCGTATGC
1 TTAGACTAGGAATGAACACCGCATGC
*
27358973 TTAGAC-ATGGAATGAACTCCGCATGC
1 TTAGACTA-GGAATGAACACCGCATGC
27358999 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (26 bp):
TTAGACTAGGAATGAACACCGCATGC
Found at i:27359334 original size:159 final size:158
Alignment explanation
Indices: 27358971--27359417 Score: 490
Period size: 159 Copynumber: 2.8 Consensus size: 158
27358961 AACACCGTAT
* *
27358971 GCTTAGACATGGAATGAACTCCGC-ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCC-CTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* * * * *
27359035 G-TCGACCGGAA-AGGCAGAATGTGCAAGCTGGGGATCGGCACGGTCCCCCCTGTGTGCTATCGA
65 GCT-GACC-GAAGAGGCAGAATGCGCAAGCCGGGGATCAGCACGGTCCCCCCTATGTGCTACCGA
* * * *
27359098 TCCTGCTGCTACAACCCTCGATCCGGTCTGT
128 TCCCGCTACCACAACCCTCGATCCGGTCTGG
* ** * * * *
27359129 TCTTAGAC-TAGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTTCGGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCA
* * * *
27359193 GCTGGCCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCTCGGTCCCCCTCTATGTGCTACCGGT
65 GCTGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCACGGTCCCCC-CTATGTGCTACCGAT
* * *
27359258 CCCGTTACCACAACCCTCGGTTCGG-CTAGG
129 CCCGCTACCACAACCCTCGATCCGGTCT-GG
*
27359288 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * * * ** *
27359353 CCGATCGAAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGGCCCCCCCTGCGTGCTATCGATCC
66 CTGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCACGGTCCCCCCTATGTGCTACCGATCC
27359418 TGCTGTCGTA
Statistics
Matches: 238, Mismatches: 44, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
157 4 0.02
158 105 0.44
159 128 0.54
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAG
CTGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCACGGTCCCCCCTATGTGCTACCGATCC
CGCTACCACAACCCTCGATCCGGTCTGG
Found at i:27359483 original size:26 final size:26
Alignment explanation
Indices: 27359447--27359499 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27359437 CTGGTCTGAT
27359447 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
27359473 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27359499 C
1 C
27359500 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27360220 original size:159 final size:157
Alignment explanation
Indices: 27359852--27360289 Score: 448
Period size: 159 Copynumber: 2.8 Consensus size: 157
27359842 AAGTCCGTAT
* * *
27359852 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCGCTCAG
* * * * * *
27359917 TCGGCTGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGACCCCCCTACATGCTGTCGATCTT
66 CCGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGACCCCCCTGCGTGCTGTCGATCTC
* ** * *
27359982 GCTACCGTAACCCTCGGTCCGATTCAA
131 ACTACCACAACCCTCAGTCCGACTCAA
* * * * ** * * *
27360009 TCTTTGAC-TGGGAATGAACTTCGTATGCATAAGTTAACCCACGAAACAAGCGTGTGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCGCTCA
* * *
27360073 GCCGGCTGGAGAGGGATAATGCGTAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTG-CAGG
65 GCCGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGA-CCCCC-CTGCGTGCTGTC-GA
* * * ***
27360137 TCTCACTGCCACAACCCTCAGTCTGGCTGGG
127 TCTCACTACCACAACCCTCAGTCCGACTCAA
* * *
27360168 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCGCTCAG
* * * * * *
27360233 CCGGCCGAAGAGGCAGAATGCGTAAGTCGAGGATCAACCCGGCCCCCCCTGCGTGCT
66 CCGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCC-GACCCCCCTGCGTGCT
27360290 ACCGATCCTG
Statistics
Matches: 223, Mismatches: 52, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
156 1 0.00
157 88 0.39
158 15 0.07
159 117 0.52
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGCGCTCAG
CCGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGACCCCCCTGCGTGCTGTCGATCTC
ACTACCACAACCCTCAGTCCGACTCAA
Found at i:27360363 original size:26 final size:26
Alignment explanation
Indices: 27360327--27360379 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27360317 CTGGTCTGAT
27360327 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
27360353 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27360379 C
1 C
27360380 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27360779 original size:880 final size:879
Alignment explanation
Indices: 27358955--27361293 Score: 3675
Period size: 880 Copynumber: 2.7 Consensus size: 879
27358945 TGTTAGACTA
** * * * *
27358955 GGAATGAACACCGTATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGA
1 GGAATGAAGTCCGTATGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAA
* * * * * * * *
27359020 GCGTGCGGGCGCTCAGTCGACCGGAAAGGCAGAATGTGCAAGCTGGGGATCGGCACGGTCCCCCC
66 GCGTGCGGGTGCTCAGTCGGCTGGAGAGGCAGAATGTGCAAGCCGGGGATCGAC-CCGACCCCCC
*** * * *** * * ** * *
27359085 TGTGTGCTATCGATCCTGCTGCTACAACCCTCGATCCGGTCTGTTCTTAGACTAGGAATGAAC-T
130 TACATGCTGTCGATCCTGCTACCGTAACCCTCGGTCCGTTC-AATCTTTGACTGGGAATGAACTT
* * * * *
27359149 CTGTATGCATAAGTCAACCCACGAAACGAGCGT-TCGGGCACTAAGCTGGCCGAAGAGGCATAAT
194 C-GTATGCATAAGTTAACCCACGAAACGAGCGTGT-GGGCACTGAGCCGGCCGGAGAGGGATAAT
* * ** * * * ** * *
27359213 GCGCAAGCCGGGGATC-AGCTCGGTCCCCCTCTATGTGCTACCGGTCCCGTTACCACAACCCTCG
257 GCGCAAGCCGGGGATCGA-CCCGATCCCCCTCTGCGTGCTGCAGGTCTCACTGCCACAACCCTCA
*
27359277 GT-TCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGT
321 GTCT-GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGT
* * **
27359341 ACGGGCACTCAGCCGATCGAAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGGCCCCCCCTGCG
385 ATGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGGCCCCCCCTGCG
*
27359406 TGCTATCGATCCTGCTGTCGTAACCCTAAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATA
450 TGCTATCGATCCTGCTGTCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATA
*
27359471 TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACTTA
515 TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTTA
*
27359536 GTCAATCGAAGAGGCCGACTAGAGAGGCATAATGCGTAAGCCGGGGATCAACCCGATCCCCCTCT
580 GCCAATCGAAGAGGCCGACTAGAGAGGCATAATGCGTAAGCCGGGGATCAACCCGATCCCCCTCT
* *
27359601 ACGTGCTGTCGATCCCGCTATCGATCTTACTGCTAGAACCCTCGGTACAGCTAGGGCTTAGACAT
645 ACGTACTGTCAATCCCGCTATCGATCTTACTGCTAGAACCCTCGGTACAGCTAGGGCTTAGACAT
27359666 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCACTCAATCGATCGGAG
710 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCACTCAATCGATCGGAG
**
27359731 AGGCAGAATGCGTAAGCCAGGGATCTGTCTGGTCCCCCCTACGTGCTACTGATCCTGCTACTGGT
775 AGGCAGAATGCGTAAGCCAGGGATCTGTCTGGTCCCCCCTACGTGCTACCAATCCTGCTACTGGT
* * ** *
27359796 CCTACTGTCGCAACCCTTGATCCAGGTTGATCTTCTACTT
840 CCTACTGCCGCAACCCTCGATCCAGGTCAATCTTCTACTG
27359836 GGAATGAAGTCCGTATGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAA
1 GGAATGAAGTCCGTATGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAA
27359901 GCGTGCGGGTGCTCAGTCGGCTGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGACCCCCCT
66 GCGTGCGGGTGCTCAGTCGGCTGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGACCCCCCT
*
27359966 ACATGCTGTCGATCTTGCTACCGTAACCCTCGGTCCGATTCAATCTTTGACTGGGAATGAACTTC
131 ACATGCTGTCGATCCTGCTACCGTAACCCTCGGTCCG-TTCAATCTTTGACTGGGAATGAACTTC
* *
27360031 GTATGCATAAGTTAACCCACGAAACAAGCGTGTGGGCACTGAGCCGGCTGGAGAGGGATAATGCG
195 GTATGCATAAGTTAACCCACGAAACGAGCGTGTGGGCACTGAGCCGGCCGGAGAGGGATAATGCG
*
27360096 TAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCAGGTCTCACTGCCACAACCCTCAGTCT
260 CAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCAGGTCTCACTGCCACAACCCTCAGTCT
27360161 GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTATGGG
325 GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTATGGG
* *
27360226 CGCTCAGCCGGCCGAAGAGGCAGAATGCGTAAGTCGAGGATCAACCCGGCCCCCCCTGCGTGCTA
390 CGCTCAGCCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGGCCCCCCCTGCGTGCTA
*
27360291 CCGATCCTGCTGTCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTT
455 TCGATCCTGCTGTCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTT
27360356 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTTAGCCAA
520 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTTAGCCAA
* *
27360421 TCGGAGAGGCCGACTAGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGATCCCCCTCTACGTA
585 TCGAAGAGGCCGACTAGAGAGGCATAATGCGTAAGCCGGGGATCAACCCGATCCCCCTCTACGTA
* * *
27360486 CTGTCAATCCCGCTGTCGGTCTTGCTGCTAGAACCCTCGGTACAGCTAGGGCTTAGACATGGAAT
650 CTGTCAATCCCGCTATCGATCTTACTGCTAGAACCCTCGGTACAGCTAGGGCTTAGACATGGAAT
27360551 GAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCACTCAATCGATCGGAGAGGCA
715 GAACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCACTCAATCGATCGGAGAGGCA
*
27360616 GAATGCGTAAGCCAGGGATCTGTCTGGTCCCCCCTACGTGCTACCAATCCTGCTGCTGGTCCTAC
780 GAATGCGTAAGCCAGGGATCTGTCTGGTCCCCCCTACGTGCTACCAATCCTGCTACTGGTCCTAC
27360681 TGCCGCAACCCTCGATCCAGGTCAATCTTCTACTG
845 TGCCGCAACCCTCGATCCAGGTCAATCTTCTACTG
*
27360716 GGAATGAAGTCTGTATGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAA
1 GGAATGAAGTCCGTATGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAA
27360781 GCGTGCGGGTGCTCAGTCGGCTGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGACCCCCCT
66 GCGTGCGGGTGCTCAGTCGGCTGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGACCCCCCT
*
27360846 ACATGCTGTCGATCCTGCTATCGTAACCCTCGGTCCGGTTCAATCTTTGACTGGGAATGAACTTC
131 ACATGCTGTCGATCCTGCTACCGTAACCCTCGGTCC-GTTCAATCTTTGACTGGGAATGAACTTC
27360911 GTATGCATAAGTTAACCCACGAAACGAGCGTGTGGGCACTGAGCCGGCCGGAGAGGGATAATGCG
195 GTATGCATAAGTTAACCCACGAAACGAGCGTGTGGGCACTGAGCCGGCCGGAGAGGGATAATGCG
27360976 CAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCAGGTCTCACTGCCACAACCCTCAGTCT
260 CAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCAGGTCTCACTGCCACAACCCTCAGTCT
* *
27361041 GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-G-GTGTGCA
325 GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTATG--
* * * **
27361104 GGTGCTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGAACAGCCTC-ATCCCCCCTGCGTG
388 GGCGCTCAGCCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGATCAGCC-CGGCCCCCCCTGCGTG
* * * * ** *
27361168 CTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
452 CTATCGATCCTGCTGTCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
27361233 CTTACACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCGCT
517 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCT
27361294 CAGCTGACCA
Statistics
Matches: 1347, Mismatches: 102, Indels: 19
0.92 0.07 0.01
Matches are distributed among these distances:
878 4 0.00
879 1 0.00
880 1226 0.91
881 116 0.09
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (879 bp):
GGAATGAAGTCCGTATGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAA
GCGTGCGGGTGCTCAGTCGGCTGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGACCCCCCT
ACATGCTGTCGATCCTGCTACCGTAACCCTCGGTCCGTTCAATCTTTGACTGGGAATGAACTTCG
TATGCATAAGTTAACCCACGAAACGAGCGTGTGGGCACTGAGCCGGCCGGAGAGGGATAATGCGC
AAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCAGGTCTCACTGCCACAACCCTCAGTCTG
GCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGC
GCTCAGCCGGCCGAAGAGGCAGAATGCGTAAGCCGAGGATCAGCCCGGCCCCCCCTGCGTGCTAT
CGATCCTGCTGTCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTA
GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTTAGCCAAT
CGAAGAGGCCGACTAGAGAGGCATAATGCGTAAGCCGGGGATCAACCCGATCCCCCTCTACGTAC
TGTCAATCCCGCTATCGATCTTACTGCTAGAACCCTCGGTACAGCTAGGGCTTAGACATGGAATG
AACTCCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCGGGCACTCAATCGATCGGAGAGGCAG
AATGCGTAAGCCAGGGATCTGTCTGGTCCCCCCTACGTGCTACCAATCCTGCTACTGGTCCTACT
GCCGCAACCCTCGATCCAGGTCAATCTTCTACTG
Found at i:27361095 original size:159 final size:157
Alignment explanation
Indices: 27360732--27361233 Score: 477
Period size: 159 Copynumber: 3.2 Consensus size: 157
27360722 AAGTCTGTAT
* * * *
27360732 GCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAG
* * * * *
27360797 TCGGCTGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGA-CCCCCCTACATGCTGTCGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* * *
27360861 TGCTATCGTAACCCTCGGTCCGGTTCAA
131 TGCCATCG-AACCCTCAGTCCGGCTCAA
* * * * ** ** *
27360889 TCTTTGAC-TGGGAATGAACTTCGTATGCATAAGTTAACCCACGAAACGAGCGTGTGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCA
* *
27360953 GCCGGCCGGAGAGGGATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTG-CAGG
65 GCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGTC--G
* * ***
27361017 TCTCACTGCCA-C-AACCCTCAGTCTGGCTGGG
127 -ATC-CTGCCATCGAACCCTCAGTCCGGCTCAA
*
27361048 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-G-GTGTGCAGGTGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTG--GGTGCTC
* * *
27361111 AGCCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGAAC-AGCCTC-ATCCCCCCTGCGTGCTGTCG
64 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CC-CGATCCCCCCTGCGTGCTGTCG
** *
27361174 ATCCTGCTGTCGCAACCCTCGGTCCGG-TCCAA
127 ATCCTGCCATCG-AACCCTCAGTCCGGCT-CAA
*
27361206 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
27361234 TTACACTGGG
Statistics
Matches: 274, Mismatches: 53, Indels: 35
0.76 0.15 0.10
Matches are distributed among these distances:
155 4 0.01
156 4 0.01
157 95 0.35
158 54 0.20
159 106 0.39
160 3 0.01
161 3 0.01
162 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
TGCCATCGAACCCTCAGTCCGGCTCAA
Found at i:27361236 original size:26 final size:26
Alignment explanation
Indices: 27361207--27361259 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27361197 CCGGTCCAAT
*
27361207 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
27361233 CTTACACTGGGGATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
27361259 C
1 C
27361260 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:27362342 original size:185 final size:185
Alignment explanation
Indices: 27362125--27362496 Score: 514
Period size: 185 Copynumber: 2.0 Consensus size: 185
27362115 TCCGATTGGG
** * * *
27362125 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCGCTCAG
* * * * *
27362190 CCGATCGGAGAGGCAGAATGCGCAAGCCAAGGATCGG-CCTGGTCCCC-CATTATGTGCTGTCGA
66 CCAATCAGAAAGGCAGAATGCGCAAGCCAAGGATCGGTCC-GATCCCCTC-TTACGTGCTGTCGA
* * * * *
27362253 TCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCATAGACTGGGAATGAACTCCGTAT
129 TCCTGCTACCACAACCCTCAGTCCAGTCCAATCATAGACTGGGAATGAACTCCGTAT
* *
27362310 GCTTAGACATGGAATGGACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCGCTCGG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCGCTCAG
** *
27362375 CCAATCAGAAAGGCAGAATGCGCAAGCCGGGGATCGGTCCGATCCCCTCTTGCGTGCTGTCGATC
66 CCAATCAGAAAGGCAGAATGCGCAAGCCAAGGATCGGTCCGATCCCCTCTTACGTGCTGTCGATC
* *
27362440 CTGCTACCACAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTAT
131 CTGCTACCACAACCCTCAGTCCAGTCCAATCATAGACTGGGAATGAACTCCGTAT
27362495 GC
1 GC
27362497 CTAAGTCAAC
Statistics
Matches: 163, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
185 160 0.98
186 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCAGGCGCTCAG
CCAATCAGAAAGGCAGAATGCGCAAGCCAAGGATCGGTCCGATCCCCTCTTACGTGCTGTCGATC
CTGCTACCACAACCCTCAGTCCAGTCCAATCATAGACTGGGAATGAACTCCGTAT
Found at i:27362609 original size:159 final size:158
Alignment explanation
Indices: 27362311--27362813 Score: 520
Period size: 159 Copynumber: 3.2 Consensus size: 158
27362301 ACTCCGTATG
* * * * * ** *
27362311 CTTAGACAT-GGAATGGACTCCATATGCCTAAGCCAACCCACGAAATGAGCATGCAGG-CGCTCG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGACATTCA
* * * * * *
27362374 GCC-AATCAGAAAGGCAGAATGCGCAAGCCGGGGATCGGTCCGAT-CCCCTCTTGCGTGCTGTCG
64 GCCGGA-CCGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTC-TGCGTGCTGTCG
* * *
27362437 ATCCTGCTACCACAACCCTCAGTCCAGTCTAAT
127 ATCCTGCTGCCACAACCCTCGGTCC-GTCTGAT
* * * *
27362470 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCATTGAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACATTCAGC
* * *
27362535 C-GACCGACGAGGCATAATGCGTAAGCCGGGGATTGGCCCGGTCCCCCTCTGCCTGCTGTC-AGT
66 CGGACCGA-GAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTCTGCGTGCTGTCGA-T
* * **
27362598 CCCGCTGCCACAACCCTCGGTCCGGCTGGGG
129 CCTGCTGCCACAACCCTCGGTCCGTCT-GAT
* * *
27362629 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGACGTTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACATTCAG
* * * * *
27362693 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATTGGCTCGGTCACCC-CTGCGTGCTG-CTGAT
65 CCGGACCGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTCTGCGTGCTGTC-GAT
27362756 CCTGCTGCCACAACCCTCGGTCCGATCTGAT
129 CCTGCTGCCACAACCCTCGGTCCG-TCTGAT
27362787 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
27362814 TTAGACTGGA
Statistics
Matches: 285, Mismatches: 47, Indels: 25
0.80 0.13 0.07
Matches are distributed among these distances:
157 2 0.01
158 68 0.24
159 204 0.72
160 11 0.04
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGACATTCAGC
CGGACCGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGTCTGAT
Found at i:27362816 original size:26 final size:26
Alignment explanation
Indices: 27362787--27362839 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27362777 CCGATCTGAT
*
27362787 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCATATG
*
27362813 CTTAGACTGGAGATGAATTCCATATG
1 CTTAGACTGGAGATGAACTCCATATG
27362839 C
1 C
27362840 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCATATG
Found at i:27368772 original size:26 final size:26
Alignment explanation
Indices: 27368736--27368788 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27368726 CCAGTTCGAT
*
27368736 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
**
27368762 CTTAGACTGGGGCTGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
27368788 C
1 C
27368789 CTAACTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27375182 original size:26 final size:26
Alignment explanation
Indices: 27375144--27375196 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27375134 GGCTCAAAAT
27375144 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
27375170 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGA-ATGGGAATGAACTCCGTATG
27375196 C
1 C
27375197 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:27375793 original size:171 final size:168
Alignment explanation
Indices: 27375447--27376000 Score: 492
Period size: 171 Copynumber: 3.3 Consensus size: 168
27375437 GGAGAGGCAT
* * ** * *
27375447 AATGCGCAAGTCGAGGATCAACCCGGTCCCCCTCTACGTGCTGTCGATCCCGCT--GTCGATC-C
1 AATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTCAGTC--TCGC
* * * * *
27375509 TGTTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTGAGCCAA
63 TG-TG--ACAACCCTCAGTTCGGCTAGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
27375574 CCCACGAAATGAGTGTACGAGTGCTCAACCGGCTGGAGAGGTAG
125 CCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGTAG
* * * *
27375618 AATGCTCAAGCCAGGGATCGGCCCGGTCCCCTCCTGCGTGCTGTCGATCCTGCTACTGGTCTTGC
1 AATGCGCAAGCCGGGGATCGGCCCGGTCCCC-CCTGCGTGCTGTCGATCCTGCT-C-AGTCTCGC
* *
27375683 TGCTGTA-AA-CCTCAG-TCTGG-TCCGATCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
63 TG-TG-ACAACCCTCAGTTC-GGCT-AGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
* * * * ***
27375744 ACCCACGAAACGAGCGTGTGGGCGCTCAGCCGACCAAAGATACAG
124 ACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGTAG
* * *
27375789 AATGCGCAAGCTGGGGATCGGCCCGAT--CCCC--C-T-CTG-C-ATGCTGC-CAGTCTCGCTGT
1 AATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTCAGTCTCGCTGT
* * *
27375845 GACAACCCTCAGTTCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
66 GACAACCCTCAGTTCGGCTAGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * *
27375910 AAATGGGCGTGCGGGCGCTTAGCTGGCCGAAGAGGTAG
131 AAATGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGTAG
* * *
27375948 AATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGTGTGCTGTCGATCTTGCT
1 AATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCT
27376001 GCCACAACCC
Statistics
Matches: 303, Mismatches: 59, Indels: 45
0.74 0.14 0.11
Matches are distributed among these distances:
157 1 0.00
158 4 0.01
159 109 0.36
160 4 0.01
161 4 0.01
162 6 0.02
163 1 0.00
164 4 0.01
165 4 0.01
166 2 0.01
167 5 0.02
168 2 0.01
169 2 0.01
170 2 0.01
171 140 0.46
172 3 0.01
173 2 0.01
174 5 0.02
175 3 0.01
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (168 bp):
AATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTCAGTCTCGCTGT
GACAACCCTCAGTTCGGCTAGAGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
AAATGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGTAG
Found at i:27376055 original size:26 final size:26
Alignment explanation
Indices: 27376026--27376078 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27376016 CCATTCCGAT
27376026 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
27376052 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
27376078 C
1 C
27376079 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:27376177 original size:184 final size:190
Alignment explanation
Indices: 27375867--27376375 Score: 554
Period size: 184 Copynumber: 2.7 Consensus size: 190
27375857 TTCGGCTAGG
* * * *
27375867 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * **
27375932 CTGGCCGAAGAGGTAGAATGCGCAAGCCGGGGATC-AGCCCGGTCCCCCCTGTGTGCTGTCGAT-
66 C-CGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCCTACGTGCTGTCGATC
* *
27375995 C-TTGCT-G-C-C-A-CAACCCTCGGTCC-ATTCCGATCTTAGATTGGGAATGAACTCCGTAT
129 CGTTGCTGGCCACTACCAACCCTCGGTCCGATT-CGATCTTAGACTGGGAATGAACTCCATAT
* * ** *
27376051 GCTTAGA-TTGGGGATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * *
27376115 GCCAGCCGGAGAGGTAAAATGCGTAAGCCGGGGATCGACTCGATCCCCCTTACGTTCTGTCGATC
65 GCC-GCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATC
* *
27376180 CTGTTGCTGGTCCTACTACCGCAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCAT
129 C-GTTGCTGG-CC-ACTA-C-CAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTCCAT
27376245 AT
189 AT
* *
27376247 GCTTAGACATGGAATGAACTCTGTA-GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
27376311 CGCGTCGGAGAGCTAGAATGTGCAAGCTGGGGATCGACCCGATCCCTCCTGCGTGCTGTTGATCC
66 C-CGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
27376376 TATTATCGCA
Statistics
Matches: 265, Mismatches: 42, Indels: 25
0.80 0.13 0.08
Matches are distributed among these distances:
183 1 0.00
184 104 0.39
185 2 0.01
187 5 0.02
188 1 0.00
190 1 0.00
192 1 0.00
193 1 0.00
195 86 0.32
196 60 0.23
197 3 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (190 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCG
TTGCTGGCCACTACCAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:27376356 original size:195 final size:196
Alignment explanation
Indices: 27376005--27376356 Score: 487
Period size: 195 Copynumber: 1.8 Consensus size: 196
27375995 CTTGCTGCCA
* * * *
27376005 CAACCCTCGGTCCATTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAAC
1 CAACCCTCGGTCCATTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAATGGGAATGAAC
** * *
27376070 TCCGTATGCCTAAGTTAACCCATGAAACGAGCGTACGGGCGCTCAGCCAGCCGGAGAGGTAAAAT
66 TCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCAGCCGGAGAGCTAAAAT
* *
27376135 GCGTAAGCCGGGGATCGACTCGATCCCCCTTACGTTCTGTCGATCCTGTTGCTGGTCCTACTACC
131 GCGCAAGCCGGGGATCGACCCGATCCCCCTTACGTTCTGTCGATCCTGTTGCTGGTCCTACTACC
27376200 G
196 G
* *
27376201 CAACCCTCGGTCCGGTT-TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGA
1 CAACCCTCGGTCC-ATTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA-ATGGGAATGA
* * * *
27376264 ACTCTGTA-GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACGC-GTCGGAGAGCTAG
64 ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAAC-CAGCCGGAGAGCTAA
* *
27376327 AATGTGCAAGCTGGGGATCGACCCGATCCC
128 AATGCGCAAGCCGGGGATCGACCCGATCCC
27376357 TCCTGCGTGC
Statistics
Matches: 135, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
195 72 0.53
196 60 0.44
197 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (196 bp):
CAACCCTCGGTCCATTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAATGGGAATGAAC
TCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCAGCCGGAGAGCTAAAAT
GCGCAAGCCGGGGATCGACCCGATCCCCCTTACGTTCTGTCGATCCTGTTGCTGGTCCTACTACC
G
Found at i:27376751 original size:26 final size:26
Alignment explanation
Indices: 27376722--27376774 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27376712 CCGATCCAAT
27376722 CTTAGACTGGGAACAAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
* * **
27376748 CTTAGATTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAACAAACTCCGTATG
27376774 C
1 C
27376775 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTCCGTATG
Found at i:27377129 original size:26 final size:25
Alignment explanation
Indices: 27377089--27377140 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
27377079 CTGGTCTGAT
27377089 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACT-CGTATG
27377115 CTTAGACATGG-AATGAACTCGTATG
1 CTTAGAC-TGGCAATGAACTCGTATG
27377140 C
1 C
27377141 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 7 0.28
26 15 0.60
27 3 0.12
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGCAATGAACTCGTATG
Found at i:27377205 original size:867 final size:868
Alignment explanation
Indices: 27376051--27378037 Score: 2675
Period size: 867 Copynumber: 2.3 Consensus size: 868
27376041 AACTCCGTAT
* * ** * * * *
27376051 GCTTAGA-TTGGGGATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTACGGGCGCTCA
1 GCTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCA
* * * * * * * * *
27376115 GCCAGCCGGAGAGGTAAAATGCGTAAGCCGGGGA-TCGACTCGATCCCCCTTACGTTCTGTCGAT
66 ACCAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATTGGCCT-GGTCCCCCCTGCGTGCTGTCGAT
* * * * * *
27376179 CCTGTTGCTGGTCCTACTACCGCAACCCTCGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCA
130 CCTGCTGCTCGT-CTTCTATCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCA
*
27376244 TATGCTTAGACATGGAATGAACTCTGTA-GCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCT
194 TATGCTTAGACATGGAATGAACTC-GTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCT
* * * *
27376308 CAACGCGTCGGAGAGCTAGAATGTGCAAGCTGGGGATCGACCCGATCCCTC-CTGCGTGCTGTTG
258 CAACGCGTAGGAGAGCTAGAATGCGCAAGCTGGGGACCGACCCGATCCC-CACTGCGTGCTGTCG
** *
27376372 ATCCTA-TTATCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAA
322 ATCCTACTGCT-GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
27376436 TTCAACCCATGAAACGAGTGTTCGGGCACTGAGCCGGCTGGAGAGGCATAATGAGAAAACCAGGG
386 TTCAACCCATGAAACGAGAGTTCGGGCACTGAGCCGGCTGGAGACGCATAATGAGAAAACCAGGG
* * *
27376501 ATCAGCCCGGTCCCCCTCTGTGTGCTGCTGGTCCCACTGCCACAACCCTCAGTCCGGTTAGGGCA
451 ATCAGCCCGGTCCCCCTCTGCGTGCTGCTGGTCCCACTGCCACAACCCTCAGTCCGGCTAGGCCA
* * *
27376566 TAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACAAAATGGGCGTACGAGTGCTCTGTCG
516 TAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACAAAATGGGCATACGAGCGCTCTGTCA
* * * * * *
27376631 GTCCGAGAGGT-AGAATGCGCAAGCCGGGGATCGACTCGGTCCCCCCTGCGTGTTGCCGATCCTG
581 GTCCGAGA-GTCAGAATGCGCAAGCCAGGGACCGACTCGATCCCCCCTACGTGCTGCCGATCCTA
* *
27376695 CTACCGCATCCCTCGGTCCGATCCAATCTTAGACTGGGAACAAACTCCGTATGCTTAGA-TTGGG
645 CTACCGCATCCCCCGGTCCGATCCAATCTTAGACTGGGAACAAACTCCGTATGCTTAGACTAGGG
27376759 GATTAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGTGCTCAACCGGCCGGAGAC
710 GATTAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGTGCTCAACCGGCCGGAGAC
* * ** *
27376824 GCATAATGCATAAGCCAGGGATCAGCCCCGTCCCCCTTTGGGTGCTGTCGAACCCGCTGCCAGTC
775 GCATAATGCACAAGCCAGGGATCAACCCCGTCCCCCTTTGCATGCTGTCGAACCCACTGCCAGTC
* *
27376889 TTGCTACCACAACCCTCGGTCCGGCTGGG
840 CTGCTACCACAACCCTCGGTCCGACTGGG
27376918 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCA
1 GCTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCA
* * * **
27376982 ACCAGCCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCTGGTCCCCCCTGCATGCTACCGATC
66 ACCAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATTGGCCTGGTCCCCCCTGCGTGCTGTCGATC
* * * *
27377047 CTACTGCTCGTCTTGCTATCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGCAATGAACTCCGT
131 CTGCTGCTCGTCTT-CTATCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCAT
*
27377112 ATGCTTAGACATGGAATGAACTCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTTA
195 ATGCTTAGACATGGAATGAACTCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCA
* * *
27377177 GC-CGGTAGGAGAGGC-AGAATGCGCAAGCTGGGGACCGGCCTGATCCCCACTGCGTGCTGTCGA
260 ACGC-GTAGGAGA-GCTAGAATGCGCAAGCTGGGGACCGACCCGATCCCCACTGCGTGCTGTCGA
* * *
27377240 TCCTGCTGCTGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAATT
323 TCCTACTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAATT
* * * * * * *
27377305 CAGCCCATGAAATGAGAGTTCGGGCACTGAGCTGGCTGGAGACGCATAATGCGCAAGCCGGGGAT
388 CAACCCATGAAACGAGAGTTCGGGCACTGAGCCGGCTGGAGACGCATAATGAGAAAACCAGGGAT
* * * *
27377370 CAGCCCGGTCCCTCTCTGCGTGCTGCTGGTCCCGCTGCCACAACCCTCGGTCCGGCTAGGCCTTA
453 CAGCCCGGTCCCCCTCTGCGTGCTGCTGGTCCCACTGCCACAACCCTCAGTCCGGCTAGGCCATA
* * * ** *
27377435 GACCTGGAATGAACTCCCTATGCATAAGCTAATCCATGAAATGGGCATGCGAGCGCTCTGTCAGT
518 GACATGGAATGAACTCCCTATGCATAAGCCAACCCACAAAATGGGCATACGAGCGCTCTGTCAGT
* * * * *
27377500 CGGAGAGTCAGAATGTGCAAGCCAGGGACCGGCTCGATCCCCCCTACGTGCTGTCGATCCTACTG
583 CCGAGAGTCAGAATGCGCAAGCCAGGGACCGACTCGATCCCCCCTACGTGCTGCCGATCCTACTA
**
27377565 CCGCATCCCCCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCTAGGGGA
648 CCGCATCCCCCGGTCCGATCCAATCTTAGACTGGGAACAAACTCCGTATGCTTAGA-CTAGGGGA
* * * *
27377630 TTAACTCCGTATGCTTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAACCGGTCGGAGAGGC
712 TTAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGTGCTCAACCGGCCGGAGACGC
* *
27377695 ATAATGCGCAAGCTAGGGATCAACCCCGTCCCCCTTTGCATGCTGTCGAACCCACTGCCAGTCCT
777 ATAATGCACAAGCCAGGGATCAACCCCGTCCCCCTTTGCATGCTGTCGAACCCACTGCCAGTCCT
*
27377760 GCTACCACAACCCTGGGTCCGACTGGG
842 GCTACCACAACCCTCGGTCCGACTGGG
*
27377787 GCTTAGACATGGGAATGAAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATTAGCGGGTGC
1 GCTTAGACATGGGAATG-AACTCCGTATGCCTAAGCCAACCCACGAAATGAGCA-T-GCGGGCGC
* * *
27377852 TCAACCGCAACCGGAGAGGCAAAATGGGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGT
63 TCAA-C-CAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATTGGCCTGGTCCCCCCTGCGTGCTGT
* *
27377917 CG-TCCTGCTGCTTCATCTTCTATCGCAACGCACCCTCGGTCTGGTCCTGATCTTA-ATTGGGAA
126 CGATCCTGCTGC-TCGTCTTCTATCGC-A---ACCCTCGGTCTGGT-CTGATCTTAGACTGGGAA
*
27377980 TGAACTCCATATTGCTCTAGACATGGGATATGAACCTCCGTATGCCTAAGCCCACCCA
185 TGAACTCCATA-TGCT-TAGACAT-GGA-ATGAA-CT-CGTATGCCTAAGCCAACCCA
27378038 CAAAAACGAC
Statistics
Matches: 974, Mismatches: 117, Indels: 41
0.86 0.10 0.04
Matches are distributed among these distances:
866 9 0.01
867 590 0.61
868 9 0.01
869 159 0.16
870 6 0.01
871 36 0.04
872 1 0.00
873 11 0.01
874 16 0.02
875 59 0.06
878 29 0.03
879 13 0.01
880 7 0.01
881 3 0.00
882 5 0.01
883 2 0.00
884 19 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (868 bp):
GCTTAGACATGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCA
ACCAGCCGGAGAGGCAAAATGCGCAAGCCGGGGATTGGCCTGGTCCCCCCTGCGTGCTGTCGATC
CTGCTGCTCGTCTTCTATCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATA
TGCTTAGACATGGAATGAACTCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAA
CGCGTAGGAGAGCTAGAATGCGCAAGCTGGGGACCGACCCGATCCCCACTGCGTGCTGTCGATCC
TACTGCTGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAATTCAA
CCCATGAAACGAGAGTTCGGGCACTGAGCCGGCTGGAGACGCATAATGAGAAAACCAGGGATCAG
CCCGGTCCCCCTCTGCGTGCTGCTGGTCCCACTGCCACAACCCTCAGTCCGGCTAGGCCATAGAC
ATGGAATGAACTCCCTATGCATAAGCCAACCCACAAAATGGGCATACGAGCGCTCTGTCAGTCCG
AGAGTCAGAATGCGCAAGCCAGGGACCGACTCGATCCCCCCTACGTGCTGCCGATCCTACTACCG
CATCCCCCGGTCCGATCCAATCTTAGACTGGGAACAAACTCCGTATGCTTAGACTAGGGGATTAA
CTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGTGCTCAACCGGCCGGAGACGCATAA
TGCACAAGCCAGGGATCAACCCCGTCCCCCTTTGCATGCTGTCGAACCCACTGCCAGTCCTGCTA
CCACAACCCTCGGTCCGACTGGG
Found at i:27377449 original size:159 final size:158
Alignment explanation
Indices: 27377115--27377615 Score: 379
Period size: 158 Copynumber: 3.2 Consensus size: 158
27377105 ACTCCGTATG
* * * *
27377115 CTTAGACATGGAATGAACT-CGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTTAGC
1 CTTAGACCTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGAGTGCGGGCACTGAGC
* * * * *
27377179 CGGTAGGAGAGGCAGAATGCGCAAGCTGGGGACCGGCCTGATCCCCACTGCGTGCTGTCGATCCT
66 CGGTAGGAGACGCAGAATGCGCAAGCCGGGGACCAGCCCGATCCCCACTGCGTGCTGTCGATCCC
** * *
27377244 GCTGCTGCAACCCTTGGTCCGGTCTGAT
131 GCTGCCACAACCCTCGGTCCGGTCTGAC
** * ** *
27377272 CTTAGA-CTGGGAATGAACTCCGTATGCCTAATTCAGCCCATGAAATGAGAGTTCGGGCACTGAG
1 CTTAGACCT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGAGTGCGGGCACTGAG
* * * * * *
27377336 CTGGCT-GGAGACGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCTCTCTGCGTGCTG-CTGG
65 CCGG-TAGGAGACGCAGAATGCGCAAGCCGGGGACCAGCCCGATCCC-CACTGCGTGCTGTC-GA
*
27377399 TCCCGCTGCCACAACCCTCGGTCCGG-CTAGGC
127 TCCCGCTGCCACAACCCTCGGTCCGGTCT-GAC
* * * * *** * * **
27377431 CTTAGACCTGGAATGAACTCCCTATGCATAAGCTAATCCATGAAATGGGCA-TGCGAGCGCTCTG
1 CTTAGACCTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAG-AGTGCGGGCACTGAG
* * * * * * * * *
27377495 TCAGTCGGAGA-GTCAGAATGTGCAAGCCAGGGACCGGCTCGATCCCCCCTACGTGCTGTCGATC
65 CCGGTAGGAGACG-CAGAATGCGCAAGCCGGGGACCAGCCCGATCCCCACTGCGTGCTGTCGATC
** * * * * ** *
27377559 CTACTGCCGCATCCCCCGGTCCGATCCAAT
129 CCGCTGCCACAACCCTCGGTCCGGTCTGAC
27377589 CTTAGA-CTGGGAATGAACTCCGTATGC
1 CTTAGACCT-GGAATGAACTCCGTATGC
27377616 TTAGACCTAG
Statistics
Matches: 268, Mismatches: 63, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 18 0.07
158 130 0.49
159 116 0.43
160 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.21
Consensus pattern (158 bp):
CTTAGACCTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGAGTGCGGGCACTGAGC
CGGTAGGAGACGCAGAATGCGCAAGCCGGGGACCAGCCCGATCCCCACTGCGTGCTGTCGATCCC
GCTGCCACAACCCTCGGTCCGGTCTGAC
Found at i:27377618 original size:26 final size:28
Alignment explanation
Indices: 27377589--27377646 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
27377579 CCGATCCAAT
27377589 CTTAGA-CT-GGGAATGAACTCCGTATG
1 CTTAGACCTAGGGAATGAACTCCGTATG
* *
27377615 CTTAGACCTAGGGGATTAACTCCGTATG
1 CTTAGACCTAGGGAATGAACTCCGTATG
27377643 CTTA
1 CTTA
27377647 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 6 0.21
27 2 0.07
28 20 0.71
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (28 bp):
CTTAGACCTAGGGAATGAACTCCGTATG
Found at i:27380606 original size:26 final size:26
Alignment explanation
Indices: 27380576--27380629 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
27380566 GTTGTCTTAG
* *
27380576 GCATATGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
27380602 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27380628 GC
1 GC
27380630 CATAGCCGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27380737 original size:343 final size:340
Alignment explanation
Indices: 27380115--27380972 Score: 887
Period size: 343 Copynumber: 2.5 Consensus size: 340
27380105 CAGTTGGACT
* * * *
27380115 GAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGAACCGGGCTGATCCCCGGCATGTGGAT
1 GAGGGTTGTGGTAGCAGGATCGACAGCACGCAG-GGGGGACCGGGC-GATCCCCGGCTTGTGCAT
* * ** * * * * * *
27380180 TATGCCTCTCCGACCGGTTGAGCACCTACATGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGT
64 TCTGCCTCTTCGGTCGGCTGAG-GCTTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * * *
27380245 TCATCCCA-ATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAAGGTTGAG
128 TCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACCAGAGCAGACCGAAGGTTGAG
* * * * *
27380309 GTAGCAGGATCGACAGCACGTAGAGGGGGACCAGGCTAATCCCCGGCTTGCGCATTATGCCTCTC
193 GTAGCAGGACCGACAGCACGCAAAAGGAGACCAGGCTAATCCCCGGCTTGCGCATTATGCCTCTC
* * * *
27380374 CGACCGACGGAGCACCCGCACGCTCATTTCGTAGGTTGACTTAGGCATACAGAGTTCATTCCTAG
258 CGACCGACGCAGCACCCGCACACTCATTTCATAGGTTGACTTAGGCATACAGAGTTCATTCCTAC
* *
27380439 TCTAAGATCAGATCGGATC
323 TCTAAGATCAGACCAGA-C
* *
27380458 GAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCAGCTTGTGCATT
1 GAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGG-CGATCCCCGGCTTGTGCATT
* * * * *
27380523 CTGCCTCTTCGGTTGGCTGAGTGCTTGTATGCTCGTTTCGAGGGTTGTCTTAGGCATATGGAGTT
65 CTGCCTCTTCGGTCGGCTGAG-GCTTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * *
27380588 TATTCCATGTCTAAGCATACGGGGTTCATTCCCAGTCTAAG-CCATAGCCGAACC-AAGGGTTGT
129 CATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACCAGAGCAG-ACCGAA-GGTTGA
** * *
27380651 GGTAGTGGGACCGACAGCACGCAAAAGGAGATCAGGCTGATCCCCGGCTTGCGCATTATGCCTCT
192 GGTAGCAGGACCGACAGCACGCAAAAGGAGACCAGGCTAATCCCCGGCTTGCGCATTATGCCTCT
* ** * * * * * * **
27380716 TCGGTCGGCTCAGCTCCCGCACACTCGTTTCATGGGTTGACTTATGCATATGGAGTTCATTCCTA
257 CCGACCGACGCAGCACCCGCACACTCATTTCATAGGTTGACTTAGGCATACAGAGTTCATTCCTA
*
27380781 CTCTAAGATTAGACCAGAC
322 CTCTAAGATCAGACCAGAC
* * * * * * * * *
27380800 CAGGGGTTGTTGTAGAAGGATAGACAGCACGCAGGAGGGATCAGGCCGATCCTCGGCTTGCGCAT
1 GA-GGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGGA-CCGGGCGATCCCCGGCTTGTGCAT
* * * * * *
27380865 TCTGCCTCCTCGGTCGGCTGA-GCATCCGCACGCTCGTTTCGTGGGTTGGCATAGGTATACGGAG
64 TCTGCCTCTTCGGTCGGCTGAGGC-T-TGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * *
27380929 TTCATTCCATGTCTAAACATACAGAGTTCATTCCCCGTCTAAGA
127 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
27380973 TTTTGACCCA
Statistics
Matches: 420, Mismatches: 86, Indels: 17
0.80 0.16 0.03
Matches are distributed among these distances:
341 2 0.00
342 89 0.21
343 326 0.78
344 3 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (340 bp):
GAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGGACCGGGCGATCCCCGGCTTGTGCATTC
TGCCTCTTCGGTCGGCTGAGGCTTGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACCAGAGCAGACCGAAGGTTGAGGTA
GCAGGACCGACAGCACGCAAAAGGAGACCAGGCTAATCCCCGGCTTGCGCATTATGCCTCTCCGA
CCGACGCAGCACCCGCACACTCATTTCATAGGTTGACTTAGGCATACAGAGTTCATTCCTACTCT
AAGATCAGACCAGAC
Found at i:27380968 original size:26 final size:26
Alignment explanation
Indices: 27380921--27380970 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
27380911 TGGCATAGGT
* *
27380921 ATACGGAGTTCATTCCATGTCTAAAC
1 ATACAGAGTTCATTCCACGTCTAAAC
*
27380947 ATACAGAGTTCATTCCCCGTCTAA
1 ATACAGAGTTCATTCCACGTCTAA
27380971 GATTTTGACC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (26 bp):
ATACAGAGTTCATTCCACGTCTAAAC
Found at i:27381688 original size:26 final size:26
Alignment explanation
Indices: 27381638--27381690 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
27381628 GTTGACTTAG
*
27381638 GCATACAGAATTCATCCCTGATCTAA
1 GCATACAGAATTCATCCCAGATCTAA
27381664 GCATACA-AAGTTCATTCCCAG-TCTAA
1 GCATACAGAA-TTCA-TCCCAGATCTAA
27381690 G
1 G
27381691 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 17 0.71
27 5 0.21
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATCCCAGATCTAA
Found at i:27381958 original size:159 final size:158
Alignment explanation
Indices: 27381792--27382167 Score: 383
Period size: 158 Copynumber: 2.4 Consensus size: 158
27381782 CGACTGAGCA
* * *
27381792 CCCGCACG-TCCATTTCGTGGGTCAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
1 CCCGCACGCT-CATTTCGTGGGT-AGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
** * * * *
27381856 CAG-ACTGAGGGTT-GTGGCAGCAGGA-CTGACAGCACGCAGAGGGGGA-CTGGGTCGATCCCCG
64 CAGAACCAAGGGTTACT-GCAACAGGATC-GACAGCACGCAG-GGGGGATC-GGGCCGATCCCCA
27381917 GCTTG-AGCATTATGCCTCTCTAG-TCGGCTCAGCG
125 GCTTGCA-CATTATGCCTCTC-AGATCGGCTCAGCG
* * *
27381951 CCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATT-CATAGTCTAAG-ATCAGA
1 CCCGCACGCTCATTTCGTGGGTAG-CTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGA
* * * *
27382014 CCGAACCAAGGGTTACTGCAACAGGATCGATAGCACGTAGGGGGGATCGGGCCGATCCCTAGCTT
64 CAGAACCAAGGGTTACTGCAACAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTT
* * * * *
27382079 GCACATTCTGCCTCTCCGATTGGTTGAGCG
129 GCACATTATGCCTCTCAGATCGGCTCAGCG
* *
27382109 CCCGTACGCTCATTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CCCGCACGCTCATTTCGTGGG-TAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
27382168 TATGGAGTTC
Statistics
Matches: 180, Mismatches: 25, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
157 1 0.01
158 96 0.53
159 80 0.44
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (158 bp):
CCCGCACGCTCATTTCGTGGGTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACA
GAACCAAGGGTTACTGCAACAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGC
ACATTATGCCTCTCAGATCGGCTCAGCG
Done.