Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 287 of 402
Found at i:27382169 original size:26 final size:26
Alignment explanation
Indices: 27382139--27382191 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27382129 GTTAGCTTAG
27382139 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
27382165 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27382191 G
1 G
27382192 AGTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27382461 original size:171 final size:171
Alignment explanation
Indices: 27382200--27382521 Score: 466
Period size: 171 Copynumber: 1.9 Consensus size: 171
27382190 AGAGTGGACC
* * *
27382200 GGACCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCAGCAGCATGCAAAGGGGGACCAGGCCG
1 GGACCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCAGCAGCATGCAAAGAGGGACCAAGCAG
* * * * * *
27382265 ATCCCCGCCTTGCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCAGCACGCTTGTTTCGTGGGTTG
66 ATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCAGCACGCTCGTTTCATGGGTTG
*
27382330 GCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCT
131 ACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCT
* * * * *
27382371 GGACTGAGGGTTGTGGTAGCAGGACCGGCAGCAGGATCAGCAGCATGCAGAGAGGGATCAAGCTA
1 GGACCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCAGCAGCATGCAAAGAGGGACCAAGC-A
* *
27382436 G-TCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTTATGGGTT
65 GATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCAGCACGCTCGTTTCATGGGTT
*
27382500 GACTTAGGCATACGGAGTTCAT
130 GACTTAGGCATACGAAGTTCAT
27382522 CCCCAGTCGA
Statistics
Matches: 132, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
171 131 0.99
172 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (171 bp):
GGACCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCAGCAGCATGCAAAGAGGGACCAAGCAG
ATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCAGCACGCTCGTTTCATGGGTTG
ACTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGCT
Found at i:27382623 original size:355 final size:343
Alignment explanation
Indices: 27382228--27382864 Score: 805
Period size: 355 Copynumber: 1.8 Consensus size: 343
27382218 GCAGGACCAG
* *
27382228 CAGCAGGATCAGCAGCATGCAAAGGGGGACCAGGCCGATCC-CCGCCTTGCGCATTCTGCCTCTT
1 CAGCAGGATCAGCAGCA-GCAAAGGGGGACCAGGCCGATCCTCAG-CTTGCGCATTCTGCCTCTC
* ** *
27382292 CGGTCGGCTGAGCGCCAGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATG
64 CGGCCGGCTGAGCGCCAGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATG
* * *
27382357 TCTAAGCCCCAGCTGG-ACTGAGGGTTGTGGTAGCAGGACCGGCAGCAGGATCAGCAGCATGCAG
129 TCTAAGCCCCAGC-GGAACCGAGGGTTGT-G--GC---A---GC-G--GGACCAGCAACATGCAG
* *
27382421 AGAGGGATCAAGCTAG-TCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCGCACG
181 AGAGGGATCAAGC-AGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCACACG
*
27382485 CTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCGAACCATACGGAGTTCATTC
245 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCGAACCATACGGAGTTCATTC
27382550 CCAATCTAAGATCAGATTGGACTGAAGGTTCTGA
310 CCAATCTAAGATCAGATTGGACTGAAGGTTCTGA
* * * * *
27382584 CAGCAGGATCGGCAGCA-CACAAGGGTGATCGGGCCGATCCTCAGCTTGTGCATTCTGCCTCTCC
1 CAGCAGGATCAGCAGCAGCA-AAGGGGGACCAGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCC
* * * * *
27382648 GGCCGGTTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
65 GGCCGGCTGAGCGCCAGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGT
* ** *
27382713 CTAAGCCCCAGCGGAACCGAGGGTTGTGGCAGCGGGACCAGCAACATGCAGAGGGGGATCGGGCC
130 CTAAGCCCCAGCGGAACCGAGGGTTGTGGCAGCGGGACCAGCAACATGCAGAGAGGGATCAAGCA
* * * * *
27382778 GATCCCCGTCTTGTGCATTATGCCTCTTCGGCCGGCTCAGCTCCCACACGCTCGTTTCGTGGGTT
195 GATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCACACGCTCGTTTCATGGGTT
*
27382843 GACTTATGCATACGGAGTTCAT
260 GACTTAGGCATACGGAGTTCAT
27382865 TCCTAGTCTA
Statistics
Matches: 245, Mismatches: 32, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
342 1 0.00
343 101 0.41
345 1 0.00
346 2 0.01
349 1 0.00
352 2 0.01
354 5 0.02
355 114 0.47
356 18 0.07
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (343 bp):
CAGCAGGATCAGCAGCAGCAAAGGGGGACCAGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCG
GCCGGCTGAGCGCCAGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTC
TAAGCCCCAGCGGAACCGAGGGTTGTGGCAGCGGGACCAGCAACATGCAGAGAGGGATCAAGCAG
ATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGCGCCCACACGCTCGTTTCATGGGTTG
ACTTAGGCATACGGAGTTCATCCCCAGTCGAACCATACGGAGTTCATTCCCAATCTAAGATCAGA
TTGGACTGAAGGTTCTGA
Found at i:27382834 original size:159 final size:158
Alignment explanation
Indices: 27382605--27383036 Score: 464
Period size: 159 Copynumber: 2.7 Consensus size: 158
27382595 GCAGCACACA
* * * * *
27382605 AGGGTGATCGGGCCGATCCTCAGCTTGTGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCATGC
1 AGGGGGATCGGGCCGATCC-CCGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGC
* * * *
27382670 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG--CGGAACCGA
65 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAG-ACCGA
**
27382733 GGGTTGTGGCAGCGGGA-C-CAGCAACATGCAG
129 GGGTTGTGGCAGCAAGATCACAG-AAC--GCAG
* * * *
27382764 AGGGGGATCGGGCCGATCCCCGTCTTGTGCATTATGCCTCTTCGGCCGGCTCAGCTCCCACACGC
1 AGGGGGATCGGGCCGATCCCCG-CTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGC
* * * * *
27382829 TCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCAGATCGA
65 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCGA
*
27382892 GGGTTGTGGCAGCAAGATCGACAGAACGTAG
129 GGGTTGTGGCAGCAAGATC-ACAGAACGCAG
* * ** * *
27382923 -GGGGGATCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCAGCTGAGCGCCCGTACGC
1 AGGGGGATCGGGCCGATCCCC-GCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGC
** *
27382987 TCGTTTCATGGGTTGGCAGAGGCATATGGAGTTCATTCCATGTCTAAGCA
65 TCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
27383037 TGCAGAGTTC
Statistics
Matches: 226, Mismatches: 37, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
158 98 0.43
159 119 0.53
160 3 0.01
161 3 0.01
162 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (158 bp):
AGGGGGATCGGGCCGATCCCCGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGG
GTTGTGGCAGCAAGATCACAGAACGCAG
Found at i:27382999 original size:158 final size:155
Alignment explanation
Indices: 27382534--27383034 Score: 481
Period size: 158 Copynumber: 3.2 Consensus size: 155
27382524 CCAGTCGAAC
* * * * *
27382534 CATACGGAGTTCATTCCCA-ATCTAAGATCAGATTGGACTGAAGGTTCTGACAGCAGGATCGGCA
1 CATACGGAGTTCATT-CCATGTCTAAGATCAGA-CGGAC-GAGGGTTGTGGCAGCAGGATC-GCA
* * * * * * * *
27382598 GCACACAAGGGTGATCGGGCCGATCCTCAGCTTGTGCATTCTGCCTCTCCGGCCGGTTGAGCGCC
62 GAACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
* *
27382663 CGCATGCCCGTTTCATGGGTTGGCTTAGG
127 CGCACGCTCGTTTCATGGGTTGGCTTAGG
* ** *
27382692 CATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CGGAACCGAGGGTTGTGGCAGCGGGA-C-CAG
1 CATACGGAGTTCATTCCATGTCTAAG-ATCAGACGG-A-CGAGGGTTGTGGCAGCAGGATCGCAG
* * *
27382754 CAACATGCAGAGGGGGATCGGGCCGATCCCCGTCTTGTGCATTATGCCTCTTCGGCCGGCTCAGC
63 -AAC--GCAG-GGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGC
* * * * *
27382819 TCCCACACGCTCGTTTCGTGGGTTGACTTATG
124 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGG
* *
27382851 CATACGGAGTTCATTCC-TAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAAGATCGACA
1 CATACGGAGTTCATTCCAT-GTCTAAGATCAGA-CGGA-CGAGGGTTGTGGCAGCAGGATCG-CA
* * * ** *
27382915 GAACGTAGGGGGGATCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCAGCTGAGCGCC
62 GAACGCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGCC
* **
27382980 CGTACGCTCGTTTCATGGGTTGGCAGAGG
127 CGCACGCTCGTTTCATGGGTTGGCTTAGG
*
27383009 CATATGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATGTCTAAG
27383035 CATGCAGAGT
Statistics
Matches: 276, Mismatches: 52, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
155 3 0.01
156 2 0.01
157 6 0.02
158 135 0.49
159 121 0.44
160 3 0.01
161 3 0.01
162 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (155 bp):
CATACGGAGTTCATTCCATGTCTAAGATCAGACGGACGAGGGTTGTGGCAGCAGGATCGCAGAAC
GCAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCTTCGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCATGGGTTGGCTTAGG
Found at i:27384222 original size:158 final size:157
Alignment explanation
Indices: 27383794--27384245 Score: 442
Period size: 159 Copynumber: 2.9 Consensus size: 157
27383784 AGGGTTGTGA
* * * *
27383794 CAGCAGGATCGGCAACACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCG
1 CAGCAGGATCGGCAGCACGTAGGGGGGATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTTCG
* * * * *
27383859 GCTGGCTGAGCTCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTC
66 GCCGGCTGAG-TCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
*** ** **
27383924 TAAGCCCCAGTTGAACTGAGGGTTGTGG
130 TAAGCCCCACCAGAACCAAGGGTTGCAG
* * * * * * * * **
27383952 CAGCGGGACCGGTAGCACGTAGAAGGGGACCGAGCCGAT-CCTTGACTTTCGCATTAGGCCTCTT
1 CAGCAGGATCGGCAGCACGTAG-GGGGGATCGGGCCGATCCCTAG-CTTGCGCATTCTGCCTCTT
* * * * * * *
27384016 CGGTCGGTTTAGCACCCGCACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-
64 CGGCCGGCTGAG-TCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAT
****
27384080 GTCTAAGATTGGACCAG-ACCAAGGGTTGCAG
127 GTCTAAG-CCCCACCAGAACCAAGGGTTGCAG
* * * *
27384111 CAGTAGGATCGGCAGCACGTAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTTCCTCTTCG
1 CAGCAGGATCGGCAGCACGTAGGGGGGATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTTCG
*
27384176 GCCGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
66 GCCGGCTGAGT-CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
27384241 TAAGC
130 TAAGC
27384246 ATACGAAGTT
Statistics
Matches: 228, Mismatches: 59, Indels: 15
0.75 0.20 0.05
Matches are distributed among these distances:
157 3 0.01
158 106 0.46
159 114 0.50
160 5 0.02
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
CAGCAGGATCGGCAGCACGTAGGGGGGATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTTCG
GCCGGCTGAGTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCCCCACCAGAACCAAGGGTTGCAG
Found at i:27384255 original size:26 final size:26
Alignment explanation
Indices: 27384218--27384270 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27384208 GTTGGCTTAG
*
27384218 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
27384244 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
27384270 G
1 G
27384271 ATTTTGGGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:27385388 original size:159 final size:158
Alignment explanation
Indices: 27384904--27385441 Score: 500
Period size: 159 Copynumber: 3.4 Consensus size: 158
27384894 TCTCTGGTTA
* * *
27384904 GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
27384969 ATCGGATCAGACCGAGGCTTGCGACAGCAGGATCGGCAACACACAGGGGGGACCGGGTCAAT-CC
66 ATCAGATCAGACCGAGGGTTGCGATAGCAGGATCGACAACACGCAGGGGGGATCGGGTCGATCCC
* * * * *
27385033 TTAGCTTGCACATTCTACC-TCTCCGATCG
131 TGA-CTTGCGCATTCTACCTTTTCGGCT-G
* * * *
27385062 GTTGAGCGCCTGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAG-T--TT-CCATGTCTAA
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAA
** ** * * * * *
27385123 GCCCA-AGTTGGACCGAGGGTTGTGGTAGCAGGA-CTGATAGCACGCAGAGGGGGATCAGGTCGA
65 GATCAGA-TCAGACCGAGGGTTGCGATAGCAGGATC-GACAACACGCAG-GGGGGATCGGGTCGA
* * * * * * *
27385186 TCCCTGGCTTGCGCATTATGCCTCTCCGACCG
127 TCCCTGACTTGCGCATTCTACCTTTTCGGCTG
* * * *
27385218 GCTCAGTGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
27385283 ATCAGATCAGACCAAGGGTTACGATAGCGGGATCGACAACACGCACGGGGGGATCGGGCCGGTCC
66 ATCAGATCAGACCGAGGGTTGCGATAGCAGGATCGACAACACGCA-GGGGGGATCGGGTCGATCC
* *
27385348 CCGACTTGTGCATTCTACCTTTTCGGCTG
130 CTGACTTGCGCATTCTACCTTTTCGGCTG
* * *
27385377 GCTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGTATACGGAGTTCATT-CCATGTCTAA
1 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAA
27385441 G
65 G
27385442 CATATGGAGT
Statistics
Matches: 293, Mismatches: 73, Indels: 27
0.75 0.19 0.07
Matches are distributed among these distances:
154 5 0.02
155 38 0.13
156 67 0.23
157 6 0.02
158 44 0.15
159 127 0.43
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCAGATCAGACCGAGGGTTGCGATAGCAGGATCGACAACACGCAGGGGGGATCGGGTCGATCCC
TGACTTGCGCATTCTACCTTTTCGGCTG
Found at i:27386359 original size:26 final size:26
Alignment explanation
Indices: 27386329--27386381 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27386319 GTTGACTCAG
27386329 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
27386355 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27386381 G
1 G
27386382 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27387422 original size:26 final size:26
Alignment explanation
Indices: 27387392--27387442 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
27387382 GTTAACTTAG
* *
27387392 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTAATCCCCAGTCTAA
* *
27387418 GCATATGAAGTTAATTCCCAGTCTA
1 GCATACGAAGTTAATCCCCAGTCTA
27387443 GGATCGGACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTAATCCCCAGTCTAA
Found at i:27388193 original size:197 final size:197
Alignment explanation
Indices: 27387855--27388229 Score: 506
Period size: 197 Copynumber: 1.9 Consensus size: 197
27387845 CTCCGACCGG
* *
27387855 CTGAGTGCCCGCACGCTCGTTCCATGGGTTGCCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 CTGAGTGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGC
* * * *
27387920 ATACGGAGTTCATTCCAATCTAAGATCGGACTAGACCGAGGGTTGCAGCAGCAGGATTGGTAGCA
66 ATACGGAGTTCATTCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGCA
* * * *
27387985 CACAGGGGGGGATCGGGCTGACCCCTGACTTGTGCATTATGCCTCTCCGGTCAGCCTTTTCGATT
131 CACAGGGGGGGATCGAGCCGACCCCTGACTTGCGCATTATACCTCTCCGGTCAGCCTTTTCGATT
27388050 GA
196 GA
* * *
27388052 CTGAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATCCCCA-GTCTAA
1 CTGAGTGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACAG-AGTTCAT-CCCATGTCTAA
* * *
27388115 GCATATGGAGTTCATTCCTAATCTAAGATCAGACCGGACCGAGGGTTGC-GATAGCAGGATCGGC
64 GCATACGGAGTTCATTCC-AATCTAAGATCAGACCAGACCGAGGGTTGCAG-CAGCAGGATCGGC
* * * *
27388179 AGCACGC-TGGGGGGATCGAGCCGATCCCTGACTTGCGCATTCTACCTCTCC
127 AGCACACAGGGGGGGATCGAGCCGACCCCTGACTTGCGCATTATACCTCTCC
27388230 TGCCGGCTGA
Statistics
Matches: 154, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
196 1 0.01
197 107 0.69
198 46 0.30
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (197 bp):
CTGAGTGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGC
ATACGGAGTTCATTCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGGCAGCA
CACAGGGGGGGATCGAGCCGACCCCTGACTTGCGCATTATACCTCTCCGGTCAGCCTTTTCGATT
GA
Found at i:27388589 original size:158 final size:159
Alignment explanation
Indices: 27388152--27388614 Score: 459
Period size: 158 Copynumber: 2.9 Consensus size: 159
27388142 ATCAGACCGG
* * * * * * * *
27388152 ACCGAGGGTTGCGATAGCAGGATCGGCAGCACGCTGGGGGGATCGAGCCGATCCCTGACTTGCGC
1 ACCGAGGGTTACGACAGTAGGACCGACAGCACACAGGGGGGATCGAGCCGATCCCCGACTTGCGC
* * * *
27388217 ATTCTACCTCTCCT-GCCGGCTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGG
66 ATTCTACCTCT-CTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
* * **
27388281 AGTTCATT-CCATGTCTAAGCCCCAGCCGG
130 AGTTCATTCCCATGTCTAAGACCCAACCAA
* * * * *
27388310 ACCGAGGGTTATGGCAGTAGGACCGATAGCACACAGAGGGGGATCGAACCGATCCCC-AGCTTGT
1 ACCGAGGGTTACGACAGTAGGACCGACAGCACACAG-GGGGGATCGAGCCGATCCCCGA-CTTGC
* * * * * * * *
27388374 GCAATATGCCTCTCTGGTCGGCTCAACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACG
64 GCATTCTACCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACG
* * *
27388439 GAGTTCATTCCCA-GTGTAAGATCGAACCAA
129 GAGTTCATTCCCATGTCTAAGACCCAACCAA
* * * ** *** * * *
27388469 ATCGAGGGTTGCGACGGTAGGATTGACAGCATGTAGGGGGGATCGGGTCGGTCCCCGACTTGCGC
1 ACCGAGGGTTACGACAGTAGGACCGACAGCACACAGGGGGGATCGAGCCGATCCCCGACTTGCGC
* *
27388534 ATTCTACCTCTCTGGTCGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGA
66 ATTCTACCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGA
27388599 GTTCATT-CCATGTCTA
131 GTTCATTCCCATGTCTA
27388615 GGCATACGGG
Statistics
Matches: 240, Mismatches: 59, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 117 0.49
159 117 0.49
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
ACCGAGGGTTACGACAGTAGGACCGACAGCACACAGGGGGGATCGAGCCGATCCCCGACTTGCGC
ATTCTACCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGA
GTTCATTCCCATGTCTAAGACCCAACCAA
Found at i:27388835 original size:26 final size:26
Alignment explanation
Indices: 27388799--27388851 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27388789 GTTGACTTAG
27388799 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
27388825 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27388851 G
1 G
27388852 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27390081 original size:26 final size:26
Alignment explanation
Indices: 27390031--27390083 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27390021 GTTGGCTTAG
* *
27390031 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
27390057 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
27390083 G
1 G
27390084 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:27390434 original size:26 final size:26
Alignment explanation
Indices: 27390395--27390450 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
27390385 TGGGTTGACT
27390395 TAAGCATACAGAGTTAACCCCCAGTC
1 TAAGCATACAGAGTTAACCCCCAGTC
* * **
27390421 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTAACCCCCAGTC
27390447 TAAG
1 TAAG
27390451 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (26 bp):
TAAGCATACAGAGTTAACCCCCAGTC
Found at i:27390872 original size:157 final size:158
Alignment explanation
Indices: 27390424--27390925 Score: 469
Period size: 160 Copynumber: 3.2 Consensus size: 158
27390414 CCCAGTCTAA
* * ** * * *
27390424 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGACCGGGGGATGCGGTAGTAAGATCGAC
1 GCATACGAAGTTCATT-CCAGGTCTAAGATCGGATCGGACCAAGGGTTGTGGTAGCAAGATCGAC
* * * ** * *
27390488 AGCACGTAAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGA-CTCTCCAGCCGAC-AGAGC
65 AGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCT-ACCTCTCCAGCCGGCTA-AGT
* * * * *
27390551 GCTCGCATGCCCATTTCATGGATTGGCTTAT
128 GCCCGCATGCTCGTTTCATGGGTTGGCTTAG
* * * ** * * ** *
27390582 GCATAGGGAGTTCATTCCAGGTCTAAG-CCCCAGCCGGACCGAAGGGTTGTGGCAGCGGGA-CCA
1 GCATACGAAGTTCATTCCAGGTCTAAGATCGGA-TCGGACC-AAGGGTTGTGGTAGCAAGATCGA
* ** * * * * * *
27390645 GCAGCATGCAGAGAAGGATCGGGCTGATCCCCAGCTTGCGCATTATGCGTCTCCAGCAGGCTCAG
64 -CAGCACGCAG-GGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCAGCCGGCTAAG
* **
27390710 TGCCCGAATGCTCGTTTCATGGGTTGAATTAG
127 TGCCCGCATGCTCGTTTCATGGGTTGGCTTAG
*
27390742 GCATACGAAGTTCATTCCCA-GTCTAAGATCGGATCGGACCAAGGGTTGTGGTAGCAAGATCGAT
1 GCATACGAAGTTCATT-CCAGGTCTAAGATCGGATCGGACCAAGGGTTGTGGTAGCAAGATCGAC
* *
27390806 AGCACGCAGGGGGGATCGGGCCG-TCCCCAGCTTGCGCATTCTACCTTTCCTGCCGGCTAAGTGC
65 AGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCAGCCGGCTAAGTGC
*
27390870 CCGCACGCTCGTTTCATGGGTTGGCTTAG
130 CCGCATGCTCGTTTCATGGGTTGGCTTAG
*
27390899 GCATACGAAGTTCATTCCATGTCTAAG
1 GCATACGAAGTTCATTCCAGGTCTAAG
27390926 CATACGGAGT
Statistics
Matches: 268, Mismatches: 65, Indels: 23
0.75 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 86 0.32
158 41 0.15
159 42 0.16
160 91 0.34
161 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCAGGTCTAAGATCGGATCGGACCAAGGGTTGTGGTAGCAAGATCGACA
GCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCAGCCGGCTAAGTGCC
CGCATGCTCGTTTCATGGGTTGGCTTAG
Found at i:27390929 original size:26 final size:26
Alignment explanation
Indices: 27390899--27390951 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27390889 GTTGGCTTAG
27390899 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTGCCA-GTCTAA
*
27390925 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTGCCAGTCTAA
27390951 G
1 G
27390952 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTGCCAGTCTAA
Found at i:27391280 original size:869 final size:862
Alignment explanation
Indices: 27389468--27391878 Score: 2937
Period size: 869 Copynumber: 2.8 Consensus size: 862
27389458 TTCGATAATC
* * * *
27389468 GGCTTGCGCATCT-TGCCTCTCTGGTCGGTTGAGCGTCCGCACGCTCGTTTCATGGGTTGACTTA
1 GGCTTGCGCAT-TATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTA
* * * * * *
27389532 GGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCTCAGTCTAAGATTAGACCTGA
65 GGCATACGGAGTTAATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGA
* * * * * * * * *
27389597 TCGAGGGTTACGACAGCAGGATCGACAAAACGCAGGAGGAACCAGGTCGATCCCCGGCTTGCGCA
130 CCGAGGGATGCGGCAGCAAGATCGACAACACGAAGGGGGAACGA-GTCGATCCCCGGCTTGCGCA
* * * * * * * *
27389662 TTCTGCCTCTCGGCCTACTGAGTGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGCAGT
194 TTCTGCCTCTCAGCCGACAGAGCGCTCGCACGCCCGTTTCATGGGTTGGCTTATGCATAGGGAGT
* * * * *
27389727 TCATTCCATGTCGAAGACCTAGTCGAACCGAGGGTTGTGGTAGCGGGACTGGCAGCACGTAGAGG
259 TCATTCCATGTCTAAGCCCTAGCCGAACCGAGGGTTGTGGCAGCGGGACTAGCAGCACGTAGA-G
** * * * * * * *
27389792 GGGATCGGGCCAATCCTCGGCTTGCG-ATTATGCCTCTCCGGCTA-GCTCAGCGCCTGCAGGCTC
323 GGGATCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCAGC-AGGCTCAGTGCCCGAACGCTC
* * * * * * *
27389855 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCAAGAGT
387 GTTTCATGGGTTGAATTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CGGACCAAGGGT
* * * * * * * ** *
27389920 TGCGGTAGCAAGATCGACAGCACGTAAGGGGGACCAAGTCGGT-CCCGGCTTATGCATTCTGGCT
451 TGCGGTAGCAAGATCGACAGCACGCAGGGGGGATC-GGGCCGTCCCCAGCTTGCGCATTCTAGCT
* * * ** * * *
27389984 CTCCGATCTGCGGAACACCTGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
515 CTCCGACCGGC-TAAGTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
* *
27390049 ATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAA
579 ATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAA
* * * * * *
27390114 GATGAGCAGCAGAATAGACAGCACGCAGAGGGGACCGAGCCAATCCCCGGCTTACGCATTCTGCC
644 GACGAGCAGCAGGATCGGCAGCACGCAGAGGGGACCGAGCCAATCCCCGGCTTACACATTCTACC
* * *
27390179 TCTCCGGTTGGTTGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
709 TCTCCGGCTGGCTGAGCACCCGCATGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
* * **
27390244 CATGTCTAAGCCCCAGTCGGACCCAGGGTTGTGGTAGCAGGACTGGCAGCGGGTTCGACAGCATG
774 CATGTCTAAGCCCCAGCCGGACCCAGGGTTGTGGTAGCAGGACTGGCAGCAGGTTCGACAGCACC
*
27390309 CAAAGGGGGACGGGGTTGATCCCT
839 CAAAGGGGGACGGGGCTGATCCCT
* * *
27390333 GGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAA
1 GGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
* * *
27390398 GCATACAGAGTTAACCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGAC
66 GCATACGGAGTTAATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAC
* * * * * * *
27390463 CGGGGGATGCGGTAGTAAGATCGACAGCACGTAAGGGGGATCGAGCCGATCCCTGGCTTGCGCAT
131 CGAGGGATGCGGCAGCAAGATCGACAACACG-AAGGGGGAACGAGTCGATCCCCGGCTTGCGCAT
* * * *
27390528 TCTGACTCTCCAGCCGACAGAGCGCTCGCATGCCCATTTCATGGATTGGCTTATGCATAGGGAGT
195 TCTGCCTCT-CAGCCGACAGAGCGCTCGCACGCCCGTTTCATGGGTTGGCTTATGCATAGGGAGT
* * * * * *
27390593 TCATTCCAGGTCTAAGCCCCAGCCGGACCGAAGGGTTGTGGCAGCGGGACCAGCAGCATGCAGAG
259 TCATTCCATGTCTAAGCCCTAGCCGAACCG-AGGGTTGTGGCAGCGGGACTAGCAGCACGTAGAG
* * *
27390658 AAGGATCGGGCTGATCCCCAGCTTGCGCATTATGCGTCTCCAGCAGGCTCAGTGCCCGAATGCTC
323 -GGGATCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCAGCAGGCTCAGTGCCCGAACGCTC
*
27390723 GTTTCATGGGTTGAATTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGT
387 GTTTCATGGGTTGAATTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CGGACCAAGGGT
* * * *
27390788 TGTGGTAGCAAGATCGATAGCACGCAGGGGGGATCGGGCCGTCCCCAGCTTGCGCATTCTACCTT
451 TGCGGTAGCAAGATCGACAGCACGCAGGGGGGATCGGGCCGTCCCCAGCTTGCGCATTCTAGCTC
*
27390853 TCCTG-CCGGCTAAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCC
516 TCC-GACCGGCTAAGT-CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
*
27390917 ATGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAA
579 ATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAA
* * * * * *
27390982 GACGAGTAGCAGGATCGGTAGCACGCAGGGGGGGACCGGGCCAATCCCCGGCTTGCATATTCTAC
644 GACGAGCAGCAGGATCGGCAGCACGCA-GAGGGGACCGAGCCAATCCCCGGCTTACACATTCTAC
* * * * * * *
27391047 CTTTCTGGCTGGCTGAGCGCCTGTATGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
708 CTCTCCGGCTGGCTGAGCACCCGCATGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
* *
27391112 CCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCAGGACTGGCAGCAGGTTTGACAGCAC
773 CCATGTCTAAGCCCCAGCCGGACCCAGGGTTGTGGTAGCAGGACTGGCAGCAGGTTCGACAGCAC
*
27391177 CCAAAGGGGGATGGGGCTGATCCCT
838 CCAAAGGGGGACGGGGCTGATCCCT
* * * *
27391202 GGCTTGCGCATTATGCGTCTCCGGTCGGCTGAGCGCCCACATGCTCATTTCATGGGTTGACTTTG
1 GGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
* **
27391267 GCATACGGAGTTAATCCTCAGTCTAAGCATACGGAGTTTGTTCCCAGTCTAAGATTGGATCAGAC
66 GCATACGGAGTTAATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAC
* * * * * *
27391332 CAAGGGATGCGGCAGCAAGATCGGCAACACGCAGGGGGGACCGAGTCGATCCCCGACTTACGCAT
131 CGAGGGATGCGGCAGCAAGATCGACAACACG-AAGGGGGAACGAGTCGATCCCCGGCTTGCGCAT
* * * *
27391397 TCTGCCTCTCAGACTGACAGAACACTCGCACGCCCGTTTCATGGGTTGGCTTATGCATAGAGAGT
195 TCTGCCTCTCAG-CCGACAGAGCGCTCGCACGCCCGTTTCATGGGTTGGCTTATGCATAGGGAGT
* * * * *
27391462 TCATTCCATGTCTATGCCCTAACCAAACCGAGGGTTATGGCAGCGGGACTAGCACCACGTAGAGG
259 TCATTCCATGTCTAAGCCCTAGCCGAACCGAGGGTTGTGGCAGCGGGACTAGCAGCACGTAGAGG
* * * * * *
27391527 GGCACCAGGCTGATCCTCTA-CTTTCGCATTATGCCTCTCCAGCCGGCTCAGTGCCCGAACACTC
324 GG-ATCGGGCTGATCC-CCAGCTTGCGCATTATGCCTCTCCAGCAGGCTCAGTGCCCGAACGCTC
* *
27391591 GTTTCATGGGTTGAATTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACGGGACCGAGGGT
387 GTTTCATGGGTTGAATTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGAC-GGACCAAGGGT
* * *
27391656 TCCAGCAACGGTAGTAGGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTGCGTATT
451 T---G---CGGTAGCAAGATCGACAGCACGCAGGGGGGATCGGGCCG-TCCCCAGCTTGCGCATT
* * *
27391721 CTAGCTCTCCGGCCCGACTGAACGTCCCGCACGTTCGTTTCATGGGTTGGCTTAGGC-TACGGAG
509 CTAGCTCTCC-GACCGGCT-AA-GTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
* * * *
27391785 TTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC
571 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
* * *
27391850 GGTAGCAGGACCAGCAGCAGGATCGGCAG
636 GATAGCAAGACGAGCAGCAGGATCGGCAG
27391879 AAACGTAAGG
Statistics
Matches: 1313, Mismatches: 208, Indels: 39
0.84 0.13 0.03
Matches are distributed among these distances:
864 1 0.00
865 161 0.12
866 77 0.06
867 59 0.04
868 407 0.31
869 417 0.32
871 1 0.00
874 35 0.03
875 25 0.02
876 95 0.07
877 33 0.03
878 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (862 bp):
GGCTTGCGCATTATGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
GCATACGGAGTTAATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAC
CGAGGGATGCGGCAGCAAGATCGACAACACGAAGGGGGAACGAGTCGATCCCCGGCTTGCGCATT
CTGCCTCTCAGCCGACAGAGCGCTCGCACGCCCGTTTCATGGGTTGGCTTATGCATAGGGAGTTC
ATTCCATGTCTAAGCCCTAGCCGAACCGAGGGTTGTGGCAGCGGGACTAGCAGCACGTAGAGGGG
ATCGGGCTGATCCCCAGCTTGCGCATTATGCCTCTCCAGCAGGCTCAGTGCCCGAACGCTCGTTT
CATGGGTTGAATTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACGGACCAAGGGTTGCGG
TAGCAAGATCGACAGCACGCAGGGGGGATCGGGCCGTCCCCAGCTTGCGCATTCTAGCTCTCCGA
CCGGCTAAGTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAAGACGAGC
AGCAGGATCGGCAGCACGCAGAGGGGACCGAGCCAATCCCCGGCTTACACATTCTACCTCTCCGG
CTGGCTGAGCACCCGCATGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCCCCAGCCGGACCCAGGGTTGTGGTAGCAGGACTGGCAGCAGGTTCGACAGCACCCAAAGGG
GGACGGGGCTGATCCCT
Found at i:27392017 original size:26 final size:26
Alignment explanation
Indices: 27391988--27392038 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
27391978 TAACTTAGGG
*
27391988 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAATCTAAGC
*
27392014 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATCCCCAATCTAAG
27392039 ATCAGAATGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAATCTAAGC
Found at i:27399200 original size:26 final size:26
Alignment explanation
Indices: 27399170--27399222 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
27399160 GTTGACTTAG
27399170 GCATATAG-AGTTCA-TCCCTAGTCTAA
1 GCATA-AGAAGTTCATTCCC-AGTCTAA
*
27399196 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
27399222 G
1 G
27399223 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 19 0.79
27 4 0.17
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:27405454 original size:159 final size:160
Alignment explanation
Indices: 27405146--27405650 Score: 483
Period size: 159 Copynumber: 3.2 Consensus size: 160
27405136 TCCAGTCTAA
* * * * * *
27405146 GCATACGTAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGTGGCAGTAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACTGAGGGTTGTGGCAGCAGGACCGA
* * * * * * * * * * *
27405209 CAGCACGCAGGGGT-GACC-GAGCCAATCCCCGACTTGCGCACTCTACCTCTCCGGCCGGCTGAA
65 CAGCACGCAGAGGTGGACCGGA-CAAATCCCTGGCTTACGCATTATGCCTCTCCGGTCGGCTCAG
* *
27405272 CGCCCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
27405304 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGA-TCGAGGGTTGTGGCAGC-GAGACCG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACT-GAGGGTTGTGGCAGCAG-GACCG
* *
27405366 ACAGCACGTAGAAGG-GGACCGGGCAAATCCCTGGCTTACGCATTATGCCTCTCCGGTCGGCTCA
64 ACAGCACGCAG-AGGTGGACCGGACAAATCCCTGGCTTACGCATTATGCCTCTCCGGTCGGCTCA
* * *
27405430 GTGCCCGCAAGCTCGTTTCGTGGGTTGACTTAG
128 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*** * * **
27405463 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGACTGGACTGAGGGTTGTGGTAGCAGGATTGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACTGAGGGTTGTGGCAGCAGGACCGA
* ** * * * * *
27405526 CAGCACGCAGGGGTGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATTGGC-CGAG
65 CAGCACGCAGAGGTGGACCGGACAAATCCCTGGCTTACGCATTATGCCTCTCCGGTCGGCTC-AG
*
27405590 CGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
129 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
27405622 GCATATGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
27405651 TACGGAGTTC
Statistics
Matches: 282, Mismatches: 50, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
157 5 0.02
158 59 0.21
159 211 0.75
160 7 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAGGGTTGTGGCAGCAGGACCGAC
AGCACGCAGAGGTGGACCGGACAAATCCCTGGCTTACGCATTATGCCTCTCCGGTCGGCTCAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:27405779 original size:185 final size:185
Alignment explanation
Indices: 27405463--27405834 Score: 534
Period size: 185 Copynumber: 2.0 Consensus size: 185
27405453 GTTGACTTAG
* ** * * * *
27405463 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGTGGTAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
27405528 GCACGCAGGGGTGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATTGGCCGAGCGC
66 GCACGAAGGGGTGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCCAAGCGC
* **
27405593 CTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
131 CTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
*
27405648 GCATACGGAGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
27405713 GCACGTAATGGG-GGACCAGG-TCGAT-CCTCGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAG
66 GCACG-AAGGGGTGGACC-GGACCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGATCGGCCAAG
27405775 CGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
128 CGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
27405833 GC
1 GC
27405835 CCCAATCGGA
Statistics
Matches: 166, Mismatches: 18, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
184 3 0.02
185 157 0.95
186 6 0.04
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGAAGGGGTGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCCAAGCGC
CTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:27406319 original size:159 final size:158
Alignment explanation
Indices: 27406017--27406521 Score: 549
Period size: 159 Copynumber: 3.2 Consensus size: 158
27406007 CACAATCTAA
* * * * *
27406017 GCATACGTAGTTCATTCCCA-GTCTAAG-ATCGGATCGGACTGAGGGTTGTGGCAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGA
* * * * *
27406080 CAGCACGCAGGGGTGACCGAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACG
65 CAGCACGCAGGGG-GACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCG
* * *
27406145 CTCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
27406175 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGA-TCGAGGGTTGTGGCAGC-GAGACCG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACT-GAGGGTTGTGGCAGCAG-GATCG
* * * *
27406237 ACAGCACGTAGAAGGGGACCGGGCAAATCCCTGGCTTACGCATTATGCCTCTCCGGTCGGCTCAG
64 ACAGCACGCAG--GGGGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAG
* * *
27406302 TGCCCGCAAGCTCGTTTCGTGGGTTGACTTAG
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*** * *
27406334 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGACTGGACTGAGGGTTGTGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGA
* * * * *
27406397 CAGCACGCAGGGGTGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATTGGC-CGAG
65 CAGCACGCA-GGG-GGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTC-AG
*
27406461 CGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
27406493 GCATATGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
27406522 TACGGAGTTC
Statistics
Matches: 287, Mismatches: 45, Indels: 28
0.80 0.12 0.08
Matches are distributed among these distances:
157 5 0.02
158 60 0.21
159 212 0.74
160 10 0.03
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGAC
AGCACGCAGGGGGACCGGGCCAATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:27406650 original size:185 final size:185
Alignment explanation
Indices: 27406334--27406705 Score: 500
Period size: 185 Copynumber: 2.0 Consensus size: 185
27406324 GTTGACTTAG
* ** * * *
27406334 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
27406399 GCACGCAGGGGTGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATTGGCCGAGCGC
66 ACACGAAGGGGTGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCCAAGCGC
* * * **
27406464 CTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
131 CTACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* *
27406519 GCATACGGAGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
27406584 ACACGTAATGGG-GGACCAGG-TCGAT-CCTCGGCTTGCGCATTCTGCCTC-TCTGATCGGCTAA
66 ACACG-AAGGGGTGGACC-GGACCGATCCCT-GGCTTGCGCATTCTGCCTCTTC-GATCGGCCAA
27406645 GCGCCTACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
127 GCGCCTACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
27406704 GC
1 GC
27406706 CCCAATCGGA
Statistics
Matches: 163, Mismatches: 20, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
184 5 0.03
185 152 0.93
186 6 0.04
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
ACACGAAGGGGTGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTTCGATCGGCCAAGCGC
CTACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:27406756 original size:871 final size:871
Alignment explanation
Indices: 27405102--27406934 Score: 3427
Period size: 871 Copynumber: 2.1 Consensus size: 871
27405092 CGCACGCTAA
* * *
27405102 TTTCGTGGGTTGACTTAGGCATATGGAGTTCATCTC-CAGTCTAAGCATACGTAGTTCATTCCCA
1 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATC-CACAATCTAAGCATACGTAGTTCATTCCCA
* *
27405166 GTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAGGGGTGACCGAGC
65 GTCTAAGATCGGATCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGTGACCGAGC
27405231 CAATCCCCGACTTGCGCACTCTACCTCTCCGGCCGGCTGAACGCCCGCACGCCCGTTTCATGGGT
130 CAATCCCCGACTTGCGCACTCTACCTCTCCGGCCGGCTGAACGCCCGCACGCCCGTTTCATGGGT
27405296 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGA
195 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGA
27405361 GACCGACAGCACGTAGAAGGGGACCGGGCAAATCCCTGGCTTACGCATTATGCCTCTCCGGTCGG
260 GACCGACAGCACGTAGAAGGGGACCGGGCAAATCCCTGGCTTACGCATTATGCCTCTCCGGTCGG
27405426 CTCAGTGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
325 CTCAGTGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
*
27405491 TTGGACTGGACTGAGGGTTGTGGTAGCAGGATTGACAGCACGCAGGGGTGGACCGGACCGATCCC
390 TTGGACTGGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGTGGACCGGACCGATCCC
27405556 TGGCTTGCGCATTCTGCCTCTTCGATTGGCCGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTA
455 TGGCTTGCGCATTCTGCCTCTTCGATTGGCCGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTA
27405621 GGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCGGACCAGA
520 GGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCGGACCAGA
*
27405686 CCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAATGGGGGACCAGGTCGATCCTCGGCTTGCGC
585 CCGAGGGTTGCGGCAGCAGGATCGACAACACGTAATGGGGGACCAGGTCGATCCTCGGCTTGCGC
* *
27405751 ATTCTGCCTCTCCGATCGGCTAAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGA
650 ATTCTGCCTCTCCGATCGGCTAAGCGCCTACACGCTCATTTCATGGGTTGGCTTAGGCATACAGA
27405816 GTTCATTCCATGTCTAAGCCCCAATCGGACTGAGGGTTATGGCAGCAAGACCGATAGCGAGATCG
715 GTTCATTCCATGTCTAAGCCCCAATCGGACTGAGGGTTATGGCAGCAAGACCGATAGCGAGATCG
27405881 GTAACATACAGAGGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCTGGCCTCT
780 GTAACATACAGAGGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCTGGCCTCT
27405946 CTGGTCGACTGAGCGCTCGCACCCTCG
845 CTGGTCGACTGAGCGCTCGCACCCTCG
27405973 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCACAATCTAAGCATACGTAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCACAATCTAAGCATACGTAGTTCATTCCCAG
27406038 TCTAAGATCGGATCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGTGACCGAGCC
66 TCTAAGATCGGATCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGTGACCGAGCC
* * * *
27406103 AATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAACGCTCGCACGCCCGTTTCATGGGTT
131 AATCCCCGACTTGCGCACTCTACCTCTCCGGCCGGCTGAACGCCCGCACGCCCGTTTCATGGGTT
27406168 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGAG
196 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGAG
27406233 ACCGACAGCACGTAGAAGGGGACCGGGCAAATCCCTGGCTTACGCATTATGCCTCTCCGGTCGGC
261 ACCGACAGCACGTAGAAGGGGACCGGGCAAATCCCTGGCTTACGCATTATGCCTCTCCGGTCGGC
27406298 TCAGTGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
326 TCAGTGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
27406363 TGGACTGGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGTGGACCGGACCGATCCCT
391 TGGACTGGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGTGGACCGGACCGATCCCT
27406428 GGCTTGCGCATTCTGCCTCTTCGATTGGCCGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
456 GGCTTGCGCATTCTGCCTCTTCGATTGGCCGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
27406493 GCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCGGACCAGAC
521 GCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCGGACCAGAC
*
27406558 CGAGGGTTGCGGCAGCAGGATCGGCAACACGTAATGGGGGACCAGGTCGATCCTCGGCTTGCGCA
586 CGAGGGTTGCGGCAGCAGGATCGACAACACGTAATGGGGGACCAGGTCGATCCTCGGCTTGCGCA
*
27406623 TTCTGCCTCTCTGATCGGCTAAGCGCCTACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAG
651 TTCTGCCTCTCCGATCGGCTAAGCGCCTACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAG
*
27406688 TTCATTCCATGTCTAAGCCCCAATCGGACTGAGGGTTATGGCAGCAAGACCGATAGCGGGATCGG
716 TTCATTCCATGTCTAAGCCCCAATCGGACTGAGGGTTATGGCAGCAAGACCGATAGCGAGATCGG
27406753 TAACATACAGAGGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCTGGCCTCTC
781 TAACATACAGAGGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCTGGCCTCTC
* *
27406818 TGGTCGGCTGAGCGCTCGTACCCTCG
846 TGGTCGACTGAGCGCTCGCACCCTCG
* * *
27406844 TTTCGTGGGTTGACTTAGGGATACAAAGTTCATCCACAATCTAAGCATACAG-AGTTCATTCCAA
1 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCACAATCTAAGCATAC-GTAGTTCATTCCCA
* *
27406908 GTCTAAGATCGGATCAGACCGAGGGTT
65 GTCTAAGATCGGATCGGACTGAGGGTT
27406935 ACGAAAGAAA
Statistics
Matches: 937, Mismatches: 23, Indels: 4
0.97 0.02 0.00
Matches are distributed among these distances:
870 1 0.00
871 935 1.00
872 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (871 bp):
TTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCACAATCTAAGCATACGTAGTTCATTCCCAG
TCTAAGATCGGATCGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGTGACCGAGCC
AATCCCCGACTTGCGCACTCTACCTCTCCGGCCGGCTGAACGCCCGCACGCCCGTTTCATGGGTT
GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGGCAGCGAG
ACCGACAGCACGTAGAAGGGGACCGGGCAAATCCCTGGCTTACGCATTATGCCTCTCCGGTCGGC
TCAGTGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
TGGACTGGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGTGGACCGGACCGATCCCT
GGCTTGCGCATTCTGCCTCTTCGATTGGCCGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAG
GCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCGGACCAGAC
CGAGGGTTGCGGCAGCAGGATCGACAACACGTAATGGGGGACCAGGTCGATCCTCGGCTTGCGCA
TTCTGCCTCTCCGATCGGCTAAGCGCCTACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAG
TTCATTCCATGTCTAAGCCCCAATCGGACTGAGGGTTATGGCAGCAAGACCGATAGCGAGATCGG
TAACATACAGAGGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGGCTGGCCTCTC
TGGTCGACTGAGCGCTCGCACCCTCG
Found at i:27407608 original size:26 final size:26
Alignment explanation
Indices: 27407572--27407624 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27407562 GTTGACTTAG
*
27407572 GCATACGGAGTTCATCCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27407598 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27407624 G
1 G
27407625 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27408072 original size:158 final size:158
Alignment explanation
Indices: 27407598--27408090 Score: 472
Period size: 158 Copynumber: 3.1 Consensus size: 158
27407588 CCCAGTGTAA
* * * *
27407598 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* ** * * * * * *
27407663 GCACGTAGGGGGGACAAGG-CTGTTCCTCAGCTTGCGCATTCTGCCTCTCTGGCCGGTTGAGCGC
66 GCACGTAGGGGGGTCCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGC
* * *
27407727 CCGCACACCTGTTTCATGGGTTGGCTTAG
130 CCGCACGCTTGTTTCGTGGGTTGGCTTAG
* ** * * * * * *
27407756 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGCAGC-GAGATCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAG-GATCGA
* * * ** *
27407819 CAGCACGCAGAGGGGGAT-CGGGTCGATCCCTGGCTTGCGCATTATCCCTCTCCGGTAGGCTCAG
64 CAGCACGTAG-GGGGG-TCCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAG
* * ** * **
27407883 CTCCCACACGCTCATTTCGTTGGTTAACTTAG
127 CGCCCGCACGCTTGTTTCGTGGGTTGGCTTAG
* * * * *
27407915 GCATACGAAGTTCATTCCCAATCAAAGATTGAACCGGACCGAGGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * *
27407980 GCATGTAGGGGGGTCCGGGTCGATCCCCGGCTTGCACATTTTGCCACTCCAGCCGACTGAGCGCC
66 GCACGTAGGGGGGTCCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCC
27408045 CGCACGCTTGTTTCGTGGGTTGGCTTAG
131 CGCACGCTTGTTTCGTGGGTTGGCTTAG
27408073 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
27408091 ATGTGTAAGC
Statistics
Matches: 256, Mismatches: 71, Indels: 16
0.75 0.21 0.05
Matches are distributed among these distances:
157 5 0.02
158 137 0.54
159 109 0.43
160 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGTAGGGGGGTCCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCC
CGCACGCTTGTTTCGTGGGTTGGCTTAG
Found at i:27408483 original size:25 final size:26
Alignment explanation
Indices: 27408454--27408505 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
27408444 CTTGACTTAG
27408454 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
27408479 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27408505 G
1 G
27408506 AGCAAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27408780 original size:159 final size:157
Alignment explanation
Indices: 27408479--27408982 Score: 545
Period size: 158 Copynumber: 3.2 Consensus size: 157
27408469 CCCAGTCTAA
* * * * *
27408479 GCATATGGAGTTCATTCCCA-GTCTAAG-AGCAAACTGGACCGAGGGTTGCGACAGCAGGATCGG
1 GCATAGGGAGTTCATT-CCATGTCTAAGCA-CAGACCGGACCGAGGGTTGTGGCAGCAGGATCGG
* * *
27408542 TAGCACACAGGGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCG
64 TAGCACATAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCC-GCTGAGCG
* *
27408607 CCCGCACGCCCGTTTCTTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
27408637 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCGGACCGAGGGTTGTGGCAACGGGACCGGT
1 GCATAGGGAGTTCATTCCATGTCTAAGCAC-AGACCGGACCGAGGGTTGTGGCAGCAGGATCGGT
* * * * *
27408701 AGCACATAGAGGGGGACCGGGCTAATCCCCGGCTTGCGCGTTATGCCTCTTCGGCCAGCTCAGTG
65 AGCACATAG-GGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCC-GCTGAGCG
* *
27408766 CCCGCACGCTCGTTTCGTGGGTTGACTTAT
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * * *
27408796 GCATACAGAGTTCATTCCCA-GTCTAAGAACAGACCGGATCGAGGGTTGTAGCAGTAGGATCGAT
1 GCATAGGGAGTTCATT-CCATGTCTAAGCACAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGT
* * * * *
27408860 AGCACGCT-GGGGGGACCGGGCCGATCCCCAGG-TTGTGCATTCTGCCTCTCCGACCGACTGAGC
65 AGCAC-ATAGGGGGGACCGGGCTGATCCCC-GGCTTGCGCATTCTGCCTCTTCGGCCG-CTGAGC
27408923 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
27408954 GCAT-GCGGAGTTCATTCAATGTCTAAGCA
1 GCATAG-GGAGTTCATTCCATGTCTAAGCA
27408983 TACGGTGTTC
Statistics
Matches: 284, Mismatches: 51, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
157 6 0.02
158 147 0.52
159 127 0.45
160 4 0.01
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (157 bp):
GCATAGGGAGTTCATTCCATGTCTAAGCACAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTA
GCACATAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTTCGGCCGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:27410042 original size:159 final size:157
Alignment explanation
Indices: 27409736--27410202 Score: 375
Period size: 157 Copynumber: 3.0 Consensus size: 157
27409726 AAGATCAGAC
* * *
27409736 CGGACCGAGGGTTGCAGCAGCGGGATCGACAGCACGTAAGGGGGATCGGGCCGATCCTCGACTTA
1 CGGACCGAGGGCTGCAGCAGCGGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCCCGACTTA
* * * * * * * *
27409801 CGCATTCTGCCTCTCCGTCGGTTGAGATCCCGTACACCCGTTTCATGGGTTGGCTTAGGCATAGG
66 CACATTATGCCTCTCCGTCGGCTCAGAGCCCGTACACCCATTTCATGGGTTGACTTAGGCATACG
*
27409866 GTGTTCATTCCATGTCTAAGCTCTGGT
131 GAGTTCATTCCATGTCTAAGCTCTGGT
** * * *
27409893 CGGACCGAGGGCTGGGGCAGCGGGA-CTGGCAGCACGCAGAGGTGGATCGGGCCGATCCCCGGCT
1 CGGACCGAGGGCTGCAGCAGCGGGATC-GACAGCACGCA-AGGGGGATCGGGCCGATCCCCGACT
* * * * * *
27409957 TGCACATTATGCCTCTTCGATCGGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCAT
64 TACACATTATGCCTCTCCG-TCGGCTCAGAGCCCGTACACCCATTTCATGGGTTGACTTAGGCAT
* **
27410022 ACGGAGTTCATTCCCA-GTCTAAGATC-GAAC
128 ACGGAGTTCATT-CCATGTCTAAGCTCTG-GT
* * * * * * * * * * *
27410052 CGAACCAAGGGTTGCA-CAACAGGATCGACAGCATGTAGGGGGGACCAGGCCGATCCCCGACTTG
1 CGGACCGAGGGCTGCAGCAGCGGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCCCGACTTA
* * * ** * * ** *** ** *
27410116 CGCATTCTGCCTCTCCGGCCGATTGAGCGCCCACACACTTGTTTTGTGGGTTGGCTTAGGCATAC
66 CACATTATGCCTCTCC-GTCGGCTCAGAGCCCGTACACCCATTTCATGGGTTGACTTAGGCATAC
*
27410181 GGAGTTTATTCCATGTCTAAGC
130 GGAGTTCATTCCATGTCTAAGC
27410203 ATATGAAGTT
Statistics
Matches: 245, Mismatches: 57, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
156 4 0.02
157 118 0.48
158 53 0.22
159 67 0.27
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
CGGACCGAGGGCTGCAGCAGCGGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCCCGACTTA
CACATTATGCCTCTCCGTCGGCTCAGAGCCCGTACACCCATTTCATGGGTTGACTTAGGCATACG
GAGTTCATTCCATGTCTAAGCTCTGGT
Found at i:27410204 original size:26 final size:26
Alignment explanation
Indices: 27410175--27410227 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
27410165 GTTGGCTTAG
* *
27410175 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
27410201 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
27410227 G
1 G
27410228 ATCGAATTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:27410554 original size:512 final size:512
Alignment explanation
Indices: 27409758--27410742 Score: 1375
Period size: 512 Copynumber: 1.9 Consensus size: 512
27409748 TGCAGCAGCG
* * *
27409758 GGATCGACAGCACGTAAGGGGGATCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGTCGGT
1 GGATCGACAGCACGTAAGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGCCGGC
* * *
27409823 TGAGATCCCGTACACCCGTTTCATGGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGCT
66 TGAGATCCCGTACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
** * * ** *
27409888 CTGGTCGGACCGAGGGCTGGGGCAGCGGGACTGGCAGCACGCAGAGGTGGATCGGGCCGATCCCC
131 CCAGTCGGACCGAGGGATGCGGCAGCGGGACCAGCAGCACGCAGAGGGGGATCGGGCCGATCCCC
* * * * *
27409953 GGCTTGCACATTATGCCTCTTCGATCGGCTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAG
196 GGCTTGCACATTATGCCTCTTCGATCGACTCAGCGCCCGCACGCTCATTTCATGGGTTAACTTAC
*
27410018 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-GAAC-CAAGGGTTGCA-CAACAGGATCGA
261 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACTCAA-GGTTACATCAACAGGATCGA
* * * * *
27410080 CAGCATGTAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGATTGAGCG
324 CAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCACATTCTACCTCTCCGGCCGACTGAGCG
* * * * * *
27410145 CCCACACACTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATATGAA
389 CCCACACACTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAATACGAA
27410210 GTTCATTCCCAGTCTAAGATCGAATTGGATCGAGGGTTGTGACAGTAGGACCCGTAGCA
454 GTTCATTCCCAGTCTAAGATCGAATTGGATCGAGGGTTGTGACAGTAGGACCCGTAGCA
* * * * *
27410269 GGATCGACAGCATGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCAGCCGG
1 GGATCGACAGCACGTAAGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCC-GCCGG
*
27410334 CTGAGCA-CCCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
65 CTGAG-ATCCCGTACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* * * * *
27410398 CCCCAGTTGGACCGAGGGATGCGGTAGCGGGACCAGCAGCACGTAGAGGGGGATTGGGTCGATCC
129 CCCCAGTCGGACCGAGGGATGCGGCAGCGGGACCAGCAGCACGCAGAGGGGGATCGGGCCGATCC
* * * *
27410463 CTGGCTTGCGCATTATGCCTCTTCGGTCGACTCAGCGCCTGCACGCTCATTTCATGGGTTAACTT
194 CCGGCTTGCACATTATGCCTCTTCGATCGACTCAGCGCCCGCACGCTCATTTCATGGGTTAACTT
* * * * * *
27410528 ACGCATACGTAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAAGGTTACATTAGCAGGATCGA
259 ACGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTCAAGGTTACATCAACAGGATCGA
* * * * *
27410593 TAGCACGCAGGGGGGATCGGGCCGATCCCCGACTTGCACATTTTACCTCTCCGGCCGACTGAGTG
324 CAGCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCACATTCTACCTCTCCGGCCGACTGAGCG
* * *
27410658 CCCGCACGCTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAATACGGA
389 CCCACACACTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAATACGAA
27410723 GTTCATTCCCAGTCTAAGAT
454 GTTCATTCCCAGTCTAAGAT
27410743 TTTGAGCCAG
Statistics
Matches: 410, Mismatches: 59, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
511 53 0.13
512 212 0.52
513 145 0.35
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (512 bp):
GGATCGACAGCACGTAAGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGCCGGC
TGAGATCCCGTACACCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
CCAGTCGGACCGAGGGATGCGGCAGCGGGACCAGCAGCACGCAGAGGGGGATCGGGCCGATCCCC
GGCTTGCACATTATGCCTCTTCGATCGACTCAGCGCCCGCACGCTCATTTCATGGGTTAACTTAC
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTCAAGGTTACATCAACAGGATCGACA
GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCACATTCTACCTCTCCGGCCGACTGAGCGCC
CACACACTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGAATACGAAGT
TCATTCCCAGTCTAAGATCGAATTGGATCGAGGGTTGTGACAGTAGGACCCGTAGCA
Found at i:27410726 original size:26 final size:26
Alignment explanation
Indices: 27410690--27410741 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27410680 TGGCTTAGGC
27410690 ATACGGAGTTCATT-CCATGTCTAAGA
1 ATACGGAGTTCATTCCCA-GTCTAAGA
27410716 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
27410742 TTTTGAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:27411452 original size:26 final size:26
Alignment explanation
Indices: 27411412--27411464 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27411402 GTTAACTTAG
*
27411412 GCATACGGAGATCATCCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
* *
27411438 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATCCCCAGTCTAA
27411464 G
1 G
27411465 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGATCATCCCCAGTCTAA
Found at i:27411938 original size:26 final size:26
Alignment explanation
Indices: 27411901--27411953 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27411891 GTTGGCTTAG
*
27411901 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
27411927 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
27411953 G
1 G
27411954 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:27412228 original size:158 final size:158
Alignment explanation
Indices: 27411927--27412269 Score: 417
Period size: 158 Copynumber: 2.2 Consensus size: 158
27411917 CCATGTCTAA
* *
27411927 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCAACA
27411992 GCACGCAAGGGGGATCGGGCCGATCACCGACTTGCGCATTCTCACTCTCCAGCCGGCTGAGCGCC
66 GCACGCAAGGGGGATCGGGCCGATCACCGACTTGCGCATTCTCACTCTCCAGCCGGCTGAGCGCC
* *
27412057 TACACGCTCGTTTCATGGGTTGACTTAG
131 CACACACTCGTTTCATGGGTTGACTTAG
* * * * * *
27412085 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCTATAGCAGGATCAACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCAACA
* * * * * *
27412150 GCACGTAGGGGGGAT-GAGGCC-AGTCTCCGGCTTGTGCATTCT-ACCTCTCC-GATCGGCTGAG
66 GCACGCAAGGGGGATCG-GGCCGA-TCACCGACTTGCGCATTCTCA-CTCTCCAG-CCGGCTGAG
* * *
27412211 CGCCCGCACACTTGTTTCATGGGTTGGCTTAG
127 CGCCCACACACTCGTTTCATGGGTTGACTTAG
* *
27412243 GCATACAAAGTTTATT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
27412270 CATACAGAGT
Statistics
Matches: 158, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
157 7 0.04
158 151 0.96
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATCAACA
GCACGCAAGGGGGATCGGGCCGATCACCGACTTGCGCATTCTCACTCTCCAGCCGGCTGAGCGCC
CACACACTCGTTTCATGGGTTGACTTAG
Found at i:27412272 original size:26 final size:26
Alignment explanation
Indices: 27412243--27412295 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27412233 GTTGGCTTAG
*
27412243 GCATACAAAGTTTATTCC-ATGTCTAA
1 GCATACAAAGTTCATTCCTA-GTCTAA
*
27412269 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCTAGTCTAA
27412295 G
1 G
27412296 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCTAGTCTAA
Found at i:27412294 original size:342 final size:342
Alignment explanation
Indices: 27411624--27412811 Score: 1039
Period size: 342 Copynumber: 3.4 Consensus size: 342
27411614 CAGCCGGACT
** * * * ** *
27411624 GAGGGTTGTGGCAGTAGGACCGGCAGCACGCAGAGAAGGACCGGGCCGATCCCTGACTTGCGCAT
1 GAGGGTTACGGCAGCAGGATCGACAGCACGCA-AGGGGGATCGGGCCGATCCC-GACTTGCGCAT
* * * * * **
27411689 TATGCCTCTCCGACCGTCTCAGCG-CTCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAG
64 TCTGCCTCTCCGACCGGCTGAGCGCCT-ACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* * * * **** *
27411753 TTCATTCCCAGTCTAAGATCGGACCGAACT-ATGGGTTG-TGGCTA-CAAGATTGGTAGTACGTA
128 TTCATTCCCAGTCTAAGATCAGACCGGACTGA-GGGTTGCT-GATAGCAGGATCAACAGCACGTA
* * * * *
27411815 GGAGGGATCGGGCTAGTC-CTCGGCTTGCACATTCTGCCTCTCCGGCTGGCTGAGCGTCCGCACG
191 GGGGGGATCGGGCCAGTCTC-CGGCTTGCACATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACA
**
27411879 CTTGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC-GAAGTTCATT
255 CTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAG-AGTTCATT
27411943 CCCAGTCTAAGATCAGACCAGACC
319 CCCAGTCTAAGATCAGACCAGACC
27411967 GAGGGTTACGGCAGCAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCACCGACTTGCGCATT
1 GAGGGTTACGGCAGCAGGATCGACAGCACGCAAGGGGGATCGGGCCGATC-CCGACTTGCGCATT
27412032 CT-CACTCTCC-AGCCGGCTGAGCGCCTACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
65 CTGC-CTCTCCGA-CCGGCTGAGCGCCTACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
27412095 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCT-ATAGCAGGATCAACAGCACGTAGG
128 TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCTGATAGCAGGATCAACAGCACGTAGG
** *
27412159 GGGGAT-GAGGCCAGTCTCCGGCTTGTGCATTCTACCTCTCCGA-TCGGCTGAGCGCCCGCACAC
193 GGGGATCG-GGCCAGTCTCCGGCTTGCACATTCTGCCTCTCCGACT-GGCTGAGCGCCCGCACAC
** *
27412222 TTGTTTCATGGGTTGGCTTAGGCATACAAAGTTTATTCCATGTCTAAGCATACAGAGTTCATTCC
256 TTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
* *
27412287 TAGTCTAAGATCAGACCAGACT
321 CAGTCTAAGATCAGACCAGACC
* * *
27412309 GAGGGTTACGGCAGCAGGACCAGTAGTAGGATCGACAGCACGTAGGGAGGGATCAGGCCGATCTC
1 GAGGGTTAC-G--GCA-G--C------AGGATCGACAGCACGCAAGG-GGGATCGGGCCGATC-C
* * * ** * * *
27412374 CGGCTTGCTCATTCTGCCTCTCCGGCTAGCTGAGCGCCAACACGCTTGTTTCATGGGTTGGCTTA
52 CGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCTACACGCTCGTTTCATGGGTTGACTTA
* * ** **
27412439 GGCATACAGAGTCCATTCCTTGTCTAAGCCCCAG-CCAGG-CTGAGGGTTGTGGCAGTAGGATCG
117 GGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACC-GGACTGAGGG-T-T-GC--T--GA---
* * * * *
27412502 GTAGCAGTATCGGTAACA-CAC--AGAGGGGGATCGGGTC-GATCTCCAGCTTACACATTATGCC
170 -TAGCAGGATC---AACAGCACGTAG-GGGGGATCGGGCCAG-TCTCCGGCTTGCACATTCTGCC
* * * * * *
27412563 TCTCCGACTGGCTGAGCCCCCGTACACTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATCC
229 TCTCCGACTGGCTGAGCGCCCGCACACTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-T
* *
27412628 CCA-GTCTAACCATA-AGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
293 CCATGTCTAAGCATACA-GAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * * * *
27412677 AAGGGTTACGGCAGCAAGATCGATAGCATGC-AGAGGGGATTGGGCCGATCCCCGACTTGCACAT
1 GAGGGTTACGGCAGCAGGATCGACAGCACGCAAG-GGGGATCGGGCCGAT-CCCGACTTGCGCAT
** * * *** * * *
27412741 TCTGCCTCTCCGATTGGCTTAACGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGT
64 TCTGCCTCTCCGACCGGCTGAGCGCCTACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
27412806 TCATTC
129 TCATTC
27412812 AATGTCTAAG
Statistics
Matches: 693, Mismatches: 101, Indels: 90
0.78 0.11 0.10
Matches are distributed among these distances:
341 6 0.01
342 260 0.38
343 36 0.05
345 3 0.00
346 1 0.00
348 1 0.00
354 18 0.03
355 184 0.27
356 21 0.03
357 1 0.00
358 2 0.00
360 1 0.00
362 1 0.00
363 1 0.00
364 1 0.00
365 3 0.00
367 14 0.02
368 127 0.18
369 8 0.01
370 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (342 bp):
GAGGGTTACGGCAGCAGGATCGACAGCACGCAAGGGGGATCGGGCCGATCCCGACTTGCGCATTC
TGCCTCTCCGACCGGCTGAGCGCCTACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCTGATAGCAGGATCAACAGCACGTAGGGGG
GATCGGGCCAGTCTCCGGCTTGCACATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACACTTGTT
TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTC
TAAGATCAGACCAGACC
Found at i:27412646 original size:26 final size:26
Alignment explanation
Indices: 27412612--27412662 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
27412602 TTGACTTAGG
*
27412612 CATACGGAGTTCATCCCCAGTCTAAC
1 CATAAGGAGTTCATCCCCAGTCTAAC
*
27412638 CATAAGGAGTTCATTCCCAGTCTAA
1 CATAAGGAGTTCATCCCCAGTCTAA
27412663 GATCAGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
CATAAGGAGTTCATCCCCAGTCTAAC
Found at i:27413302 original size:159 final size:160
Alignment explanation
Indices: 27413096--27413479 Score: 409
Period size: 159 Copynumber: 2.4 Consensus size: 160
27413086 CTTCGACCGA
* * * * * *
27413096 CTGAGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCATGTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * * *
27413161 CCCAG-CC-GGACCGAGGGTTGTGGCAGCGGGACCGGTAGCACGTAGAG-GGGAACCGGGCCGAT
66 ACCAGACCAGG-CCGAGGGTTGTGGCAGCAGGACCGATAGCACGCA-AGCGGGAACCAGGCCGAT
* * *
27413223 CCCCGGCTTGTAAATTATGCCTCTCCGGTCAG
129 CCCCGACTAGTAAATTATGCCTCTCCGATCAG
* * *
27413255 CTTAGCGCCCGCACGCTCATGTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-ATCTAAG
1 CTGAGCGCCCGCACGCTCATGTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
* * ** * * *
27413319 -ATCGGACCAGGCCGAGGGTTGTGGCAGCAGGATTGATAGCACGCAAGCGGGGACTAGGCCGGTC
65 CACCAGACCAGGCCGAGGGTTGTGGCAGCAGGACCGATAGCACGCAAGCGGGAACCAGGCCGATC
* ** * * *
27413383 CTCGACTAGTGCATTCTGTCTCTCCGATCGG
130 CCCGACTAGTAAATTATGCCTCTCCGATCAG
* * *
27413414 CTGAGCGCCCGCACGCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCATGTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
27413479 A
66 A
27413480 TACAGAGTTC
Statistics
Matches: 183, Mismatches: 36, Indels: 11
0.80 0.16 0.05
Matches are distributed among these distances:
158 7 0.04
159 170 0.93
160 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (160 bp):
CTGAGCGCCCGCACGCTCATGTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ACCAGACCAGGCCGAGGGTTGTGGCAGCAGGACCGATAGCACGCAAGCGGGAACCAGGCCGATCC
CCGACTAGTAAATTATGCCTCTCCGATCAG
Found at i:27413848 original size:26 final size:26
Alignment explanation
Indices: 27413819--27413870 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27413809 TTGACTTAGA
*
27413819 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCAAGTCTAAG
*
27413845 CATACGGAGTTCATTCCAAGTCTAAG
1 CATACGGAGTTCATCCCAAGTCTAAG
27413871 ATTGGTCTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCAAGTCTAAG
Found at i:27414154 original size:159 final size:157
Alignment explanation
Indices: 27413895--27414345 Score: 451
Period size: 159 Copynumber: 2.9 Consensus size: 157
27413885 AGGGTTGCGA
* * * ** * * *
27413895 CAGCAGGATTGGCAGCACGCAGGGGGGACCGGGCCGGTCCCCAGCTTGCACATTCTGCCTC-TCT
1 CAGCAGGATCGACAGCACGCAAGGGCAACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTC-
* * * * * * *
27413959 GGCCGACTAAGTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATA-GAGAGTTCATTCAATG
65 GACTGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG-GAGTTCATTCCATG
*
27414023 TCTAAGCCCCAA-TCGGATCGAGGGTTGTGG
129 TCTAAGCCCCAACT-GAATCGA-GGTTGTGG
** * **
27414053 CAGTGGGATCGGCAGCACGCAGAGGGCAACCGGGCCGATCCTTAGCTTGCGCATTATGCCTCTTC
1 CAGCAGGATCGACAGCACGCA-AGGGCAACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTC
* * * **
27414118 GACTGGCTCAGCGTCCGCACGCTCGTTTCATGGGTTGACTTTTGCATACGGAGTTCATTCCCA-G
65 GACTGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
** **
27414182 TCTAAGATCGGACTGAATCGAGGTTGTGG
129 TCTAAGCCCCAACTGAATCGAGGTTGTGG
* ** ** * * *
27414211 CAGCAGGATCGATAGCACGCAAGGGGGACCGGGGTGATCCCCGGCTTGTGCATTTTGCCTCTTCG
1 CAGCAGGATCGACAGCACGCAAGGGCAACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCG
* * *
27414276 ATTGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
66 ACTGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
27414341 TAAGC
131 TAAGC
27414346 ATACGGAGTT
Statistics
Matches: 237, Mismatches: 50, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
156 3 0.01
157 92 0.39
158 43 0.18
159 93 0.39
160 6 0.03
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
CAGCAGGATCGACAGCACGCAAGGGCAACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTTCG
ACTGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAACTGAATCGAGGTTGTGG
Found at i:27414348 original size:26 final size:26
Alignment explanation
Indices: 27414318--27414370 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27414308 GTTGGCTTAG
*
27414318 GCATACGGAGTTCA-TTCCATGTCTAA
1 GCATACGGAGTTCAGTACCA-GTCTAA
27414344 GCATACGGAGTTCAGTACCAGTCTAA
1 GCATACGGAGTTCAGTACCAGTCTAA
27414370 G
1 G
27414371 ATTTTGAGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAGTACCAGTCTAA
Found at i:27414759 original size:26 final size:26
Alignment explanation
Indices: 27414723--27414775 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27414713 GTTGGCTTAG
27414723 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27414749 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27414775 G
1 G
27414776 GTCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27415313 original size:26 final size:26
Alignment explanation
Indices: 27415277--27415328 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27415267 TTGCTTAGGC
27415277 ATACGGAGTTCATT-CCATGTCTAAGA
1 ATACGGAGTTCATTCCCA-GTCTAAGA
27415303 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
27415329 GTTTGAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:27418215 original size:26 final size:26
Alignment explanation
Indices: 27418185--27418237 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27418175 GTTGGCTTAG
27418185 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
27418211 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27418237 G
1 G
27418238 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27418350 original size:195 final size:195
Alignment explanation
Indices: 27417883--27418407 Score: 560
Period size: 195 Copynumber: 2.7 Consensus size: 195
27417873 GAGGGTTTTG
* * * * * * *
27417883 GTAGCAGGATC-ATAGCACACAGGAGGGACCGAGC-CAGTCCTCG-GCTTACACATTCTGCCTTT
1 GTAGCAAGATCGAGAGCACGCAGGAGGGACCGGGCTGA-TCC-CGAGCTTACGCATTCTGCCTCT
* * * * * * * * * **
27417945 TCGATCGGCTAAGCGCCCACACGCTCGTTTCATGAGCTGGCTTAGGCGTATGGAGTTCATTTGAT
64 CCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
** * * *
27418010 GTCTAAGCATACAGAGTTCATTCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGATAGTAGGAC
129 GTCTAAGCATACAGAGTTCATTCCAGTCTAAGATCGGACCAGACCAAGGGTTGTAACAGTAAGAC
27418075 CA
194 CA
* * * * * * *
27418077 GTAGGAAGATCGAGAGCATGCAGGGGGGATCGGGCTGGTCCCTAGCTTACGCATTCTGCCTCTCT
1 GTAGCAAGATCGAGAGCACGCAGGAGGGACCGGGCTGATCCCGAGCTTACGCATTCTGCCTCTCC
*
27418142 GACCGACTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
**
27418207 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTAACAGTAAGACC
131 CTAAGCATACAGAGTTCATT-CCAGTCTAAGATCGGACCAGACCAAGGGTTGTAACAGTAAGACC
27418272 A
195 A
* * *
27418273 GTAGCAGGATC-AGCAGCACGTAGGAGGGACCGGG-TCGATCCCCGA-CTTGCGCATTCTGCCTC
1 GTAGCAAGATCGAG-AGCACGCAGGAGGGACCGGGCT-GAT-CCCGAGCTTACGCATTCTGCCTC
* * * * * * *
27418335 TCCG-TCGATTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGCTCATTCCA
63 TCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
27418399 TGTCTAAGC
128 TGTCTAAGC
27418408 CCCAGTCGGA
Statistics
Matches: 273, Mismatches: 51, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
194 10 0.04
195 173 0.63
196 86 0.32
197 4 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (195 bp):
GTAGCAAGATCGAGAGCACGCAGGAGGGACCGGGCTGATCCCGAGCTTACGCATTCTGCCTCTCC
GACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
CTAAGCATACAGAGTTCATTCCAGTCTAAGATCGGACCAGACCAAGGGTTGTAACAGTAAGACCA
Found at i:27419687 original size:26 final size:26
Alignment explanation
Indices: 27419640--27419692 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27419630 GTTGACTTAG
*
27419640 GCATACAGAGGTTATCCCCAGTCTAA
1 GCATACAGAGGTTATCCACAGTCTAA
*
27419666 GCATACAGA-GTTCATTCACAGTCTAA
1 GCATACAGAGGTT-ATCCACAGTCTAA
27419692 G
1 G
27419693 ATCTGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGGTTATCCACAGTCTAA
Found at i:27420176 original size:26 final size:26
Alignment explanation
Indices: 27420140--27420244 Score: 194
Period size: 26 Copynumber: 4.0 Consensus size: 26
27420130 GTTGGCTTAG
27420140 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
27420166 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
27420192 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
27420218 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
27420244 G
1 G
27420245 ATCGGATCGG
Statistics
Matches: 78, Mismatches: 0, Indels: 2
0.98 0.00 0.03
Matches are distributed among these distances:
26 75 0.96
27 3 0.04
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:27420610 original size:26 final size:26
Alignment explanation
Indices: 27420573--27420651 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
27420563 GTTGACTTAG
*
27420573 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
27420599 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
* *
27420625 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
27420651 G
1 G
27420652 ATCAGATTGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:27421350 original size:26 final size:26
Alignment explanation
Indices: 27421314--27421366 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27421304 GTTGACTTAG
27421314 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
27421340 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27421366 G
1 G
27421367 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27421687 original size:26 final size:26
Alignment explanation
Indices: 27421657--27421709 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27421647 GTTGGCTTAG
*
27421657 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
27421683 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
27421709 G
1 G
27421710 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:27421802 original size:36 final size:36
Alignment explanation
Indices: 27421762--27421830 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
27421752 GTGCCGCACT
27421762 TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
1 TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
*
27421798 TTTACAAGCCATAAAAATGGCATTGGCGTGGCA
1 TTTACAAGCCATAAAAATGGCATTGGCATGGCA
27421831 CGAAACTTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.23
Consensus pattern (36 bp):
TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
Found at i:27422292 original size:12 final size:12
Alignment explanation
Indices: 27422275--27422304 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
27422265 GAGGGTTGCG
27422275 GCAGCAGGATCA
1 GCAGCAGGATCA
*
27422287 GCAGCAGGATCT
1 GCAGCAGGATCA
27422299 GCAGCA
1 GCAGCA
27422305 CGCAGGGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.27, G:0.33, T:0.10
Consensus pattern (12 bp):
GCAGCAGGATCA
Found at i:27422763 original size:26 final size:26
Alignment explanation
Indices: 27422727--27422777 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27422717 TGGCTTAGGA
27422727 ATACGAAGTTCATT-CCATTTCTAAGC
1 ATACGAAGTTCATTCCCA-TTCTAAGC
*
27422753 ATACGGAGTTCATTCCCATTCTAAG
1 ATACGAAGTTCATTCCCATTCTAAG
27422778 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCATTCTAAGC
Found at i:27423483 original size:26 final size:26
Alignment explanation
Indices: 27423447--27423499 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27423437 GTTGACTTAG
27423447 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27423473 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27423499 G
1 G
27423500 ATCAGACGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27424284 original size:26 final size:26
Alignment explanation
Indices: 27424254--27424306 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27424244 GTTAGCTTAG
27424254 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
27424280 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
27424306 G
1 G
27424307 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:27424669 original size:25 final size:26
Alignment explanation
Indices: 27424634--27424685 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
27424624 GTTGACCTAG
*
27424634 GCATACAGAGTTCA-TCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTGTAA
*
27424659 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTGTAA
27424685 G
1 G
27424686 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTGTAA
Found at i:27425183 original size:26 final size:26
Alignment explanation
Indices: 27425134--27425187 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
27425124 GTTGGCTTAG
* *
27425134 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
27425160 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
27425186 GC
1 GC
27425188 TTTTGAGCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:27425278 original size:11 final size:11
Alignment explanation
Indices: 27425264--27425288 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
27425254 ACCATCGCCA
27425264 GAGCATCGTCG
1 GAGCATCGTCG
27425275 GAGCATCGTCG
1 GAGCATCGTCG
27425286 GAG
1 GAG
27425289 AGCCTAACCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.24, G:0.40, T:0.16
Consensus pattern (11 bp):
GAGCATCGTCG
Found at i:27425897 original size:26 final size:26
Alignment explanation
Indices: 27425867--27425919 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27425857 GTTGACTTAG
27425867 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
* *
27425893 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27425919 G
1 G
27425920 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27426403 original size:26 final size:26
Alignment explanation
Indices: 27426366--27426418 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27426356 GTTGGCTTTG
*
27426366 GCATACGTAGTTCATTCCATGTCTAA
1 GCATACGTAGTTCATTCCAAGTCTAA
*
27426392 GCATACAG-AGTTCATTTCAAGTCTAA
1 GCATAC-GTAGTTCATTCCAAGTCTAA
27426418 G
1 G
27426419 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGTAGTTCATTCCAAGTCTAA
Found at i:27428568 original size:26 final size:26
Alignment explanation
Indices: 27428520--27428570 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
27428510 GTTGACTTAG
*
27428520 GCATACGGAGTTCATCGCTAGTCTAA
1 GCATACGGAGTTCATCGCCAGTCTAA
*
27428546 GCATACGGAGTTTATTC-CCAGTCTA
1 GCATACGGAGTTCA-TCGCCAGTCTA
27428571 GGATCAGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCGCCAGTCTAA
Found at i:27429758 original size:26 final size:26
Alignment explanation
Indices: 27429729--27429781 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27429719 GTTGACTTAG
*
27429729 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
27429755 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27429781 G
1 G
27429782 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27430302 original size:162 final size:157
Alignment explanation
Indices: 27429883--27430392 Score: 483
Period size: 161 Copynumber: 3.2 Consensus size: 157
27429873 GGCTTAGTCC
*
27429883 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCG
1 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
* * * *
27429948 G-ATCGAGGGTTGTGGCAGCGGGATCGACAGCACACAAGGGGGACCGGGCCAATCCCTGGCTTGC
66 GAAT-GAGGGTTGTGGCAACGGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCC-GGCTTGC
* * * * *
27430012 ACATAATGCATTTTTTCCGGTCTGCTCAACGG
129 GCATTATGC---CTCTCCGGTCGGCTCAACGG
* * * * * * * ** *
27430044 CCGCACGCTCGTTTCGTGGGTTGACTTGGGCATACGAAGTTTATTCCCA-GTCTAAG-ATCGGAT
1 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-T
* * * ** *
27430107 CAGACTGAGGGTTGCGGCAAAAGGATCGACAGCACGTAGGGGGGACCGGGCCGATCCTCGGCTTG
64 CGGAATGAGGGTTGTGGCAACGGGATCGACAGCACGCAGGGGGGACCGGGCCGATCC-CGGCTTG
* * * * *
27430172 CGGATTCTGCCTCTCCGGTCGGTTGAGCGCCAG
128 CGCATTATGCCTCTCCGGTCGGCTCAACG---G
*
27430205 CACGCATGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
1 C-CGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * *
27430270 GGAATGAGGGTTGTGGTAACGGGACCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTG
65 GGAATGAGGGTTGTGGCAACGGGATCGACAGCACGCAG-GGGGGACCGGGCCGAT-CCCGGCTTG
*
27430335 CGCATTATGCCTCTTCGG-CTGGCT-AA-GCG
128 CGCATTATGCCTCTCCGGTC-GGCTCAACG-G
* *
27430364 CCTGCACGCTCATTTCGTGGGTTGACTTA
1 CC-GCACGCTCATTTCATGGGTTGGCTTA
27430393 TACATACAGA
Statistics
Matches: 275, Mismatches: 60, Indels: 30
0.75 0.16 0.08
Matches are distributed among these distances:
158 14 0.05
159 25 0.09
160 1 0.00
161 109 0.40
162 82 0.30
163 42 0.15
164 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.24
Consensus pattern (157 bp):
CCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
GAATGAGGGTTGTGGCAACGGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCGGCTTGCGC
ATTATGCCTCTCCGGTCGGCTCAACGG
Found at i:27431028 original size:159 final size:157
Alignment explanation
Indices: 27430629--27431078 Score: 505
Period size: 159 Copynumber: 2.8 Consensus size: 157
27430619 GGGTTGTGAT
* *
27430629 AGCAGGATCGATAGCACGCAG-GGGGGATCAGG-TCGATCCCCGGCTTACGCATTCTGCCTCTCT
1 AGCAGGATCGATAGCACGCAGAGGGGGATCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTC-
* * * * * * *
27430692 TACCGACTGAGCGCCCGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
64 CATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * *
27430757 CTAAGCCCTAGCTGGACCGAGGGTTGTAC
129 CTAAGACCTAGATGGACCAAGGGTTGCAC
* * * * * *
27430786 AGCTGGA-CTGGTAGCATGCAGAGGGGGATTGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTC
1 AGCAGGATC-GATAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC
* * * * *
27430850 AGTCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAGAGTTCATTCC-TAG
65 A-TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-G
*
27430914 TCTAAGATC-AGATCGGACCAAGGGTTGCAGC
128 TCTAAGACCTAGAT-GGACCAAGGGTTGCA-C
* * * *
27430945 AGCAGGATCGACAGTACACAGAGGGGGATCGGGCTGATCCTCGGCTTGCGCATTCTGCCTCTCCG
1 AGCAGGATCGATAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCC-
* * *
27431010 ATCGGCTGAGCGCTCGCACGCTCGTTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
65 ATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
27431075 TAAG
130 TAAG
27431079 CATACGTAGT
Statistics
Matches: 240, Mismatches: 43, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
156 1 0.00
157 21 0.09
158 103 0.43
159 112 0.47
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
AGCAGGATCGATAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCA
TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGACCTAGATGGACCAAGGGTTGCAC
Found at i:27431082 original size:26 final size:26
Alignment explanation
Indices: 27431052--27431130 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
27431042 GTTGGCTTAG
27431052 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
27431078 GCATACGTAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
27431104 GTATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
27431130 G
1 G
27431131 ATCAGATCAG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 46 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:27431828 original size:26 final size:26
Alignment explanation
Indices: 27431798--27431850 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27431788 GTTTGCTTAG
27431798 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
27431824 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27431850 G
1 G
27431851 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27438398 original size:26 final size:26
Alignment explanation
Indices: 27438362--27438414 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27438352 GTTCACTTAG
*
27438362 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
27438388 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
27438414 G
1 G
27438415 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:27439384 original size:156 final size:159
Alignment explanation
Indices: 27439084--27439428 Score: 482
Period size: 157 Copynumber: 2.2 Consensus size: 159
27439074 GAGGGACCAA
* * *
27439084 GTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCACCCGCATGCCCGTTTCGTGG
1 GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAACTAAGCACCCGCACGCCCGTTTCGTGG
** *
27439149 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGT
66 GTTGAATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAAT
*
27439214 GGGATCGATAGCACGCA-AGGGAGACCGC
131 GGGACCGATAGCACGCAGAGGGAGACCGC
* * ** **
27439242 GTCGATCCCCGGTTTGTGCATTCTGCCTCTCCGGCCTGCTAAGTGCCCGCACGCCCG-TTCGTGG
1 GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAACTAAGCACCCGCACGCCCGTTTCGTGG
27439306 GTTGAATTAGGCATAGGGAGTTCATTCCATGTCTAA-CCCCAGCCGGACCGAGGGTTGTGGTAAT
66 GTTGAATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAAT
* * *
27439370 GGGGCCGATAGCACGCAGAGGGGGAACAG-
131 GGGACCGATAGCACGCAGAGGGAG-ACCGC
* * *
27439399 GCCGATCCCCGGCATGCGCATTATGCCTCT
1 GTCGATCCCCGGCTTGCGCATTCTGCCTCT
27439429 TCTACCGGCT
Statistics
Matches: 164, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
156 42 0.26
157 71 0.43
158 51 0.31
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.22
Consensus pattern (159 bp):
GTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAACTAAGCACCCGCACGCCCGTTTCGTGG
GTTGAATTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAAT
GGGACCGATAGCACGCAGAGGGAGACCGC
Found at i:27439447 original size:157 final size:158
Alignment explanation
Indices: 27439086--27439489 Score: 458
Period size: 157 Copynumber: 2.6 Consensus size: 158
27439076 GGGACCAAGT
* * * * ** * * *
27439086 CGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCACCCGCATGCCCGTTTCGTGGGT
1 CGATCCCCGGCATGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCACGCCCGTTTCGTGGGT
* *
27439151 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGTGG
66 TGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAATGG
* * *
27439216 GATCGATAGCACGCAAGGGAGACCGCGT
131 GACCGATAGCACGCAAGGGAGACAGCGC
** * * * * *
27439244 CGATCCCCGGTTTGTGCATTCTGCCTCTCCGGCCTGCTAAGTGCCCGCACGCCCG-TTCGTGGGT
1 CGATCCCCGGCATGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCACGCCCGTTTCGTGGGT
*
27439308 TGAATTAGGCATAGGGAGTTCATTCCATGTCTAA-CCCCAGCCGGACCGAGGGTTGTGGTAATGG
66 TGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAATGG
* *
27439372 GGCCGATAGCACGCAGAGGGGGAACAG-GC
131 GACCGATAGCACGCA-AGGGAG-ACAGCGC
* * * * * *
27439401 CGATCCCCGGCATGCGCATTATGCCTCTTCTACCGGCTCAA-CGCCCGTACACTCGTTTCGTGCG
1 CGATCCCCGGCATGCGCATTATGCCTCTCCGACCGGCT-AAGCGCCCGCACGCCCGTTTCGTGGG
*
27439465 TTGACTTATGCAT-GTGGAGTTCATT
65 TTGACTTAGGCATAG-GGAGTTCATT
27439490 TCAAGTATAA
Statistics
Matches: 209, Mismatches: 32, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
156 42 0.20
157 88 0.42
158 79 0.38
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.24
Consensus pattern (158 bp):
CGATCCCCGGCATGCGCATTATGCCTCTCCGACCGGCTAAGCGCCCGCACGCCCGTTTCGTGGGT
TGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAATGG
GACCGATAGCACGCAAGGGAGACAGCGC
Found at i:27439642 original size:158 final size:157
Alignment explanation
Indices: 27439001--27439656 Score: 555
Period size: 158 Copynumber: 4.2 Consensus size: 157
27438991 CCCAATCTAA
* * * *
27439001 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAAGGTTACGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGACCAG-CCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * *
27439066 GTATGCAGGAGGGACCAAGTCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCACC
65 GCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACC
* *
27439131 CGCATGCCCGTTTCGTGGGTTGGCTTAG
130 CGCACGCCCGTTTCGTGGGTTGACTTAG
* * * * ** *
27439159 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGTGGGATCGATA
1 GCATACGGAGTTCATTCCAAGTCTAAG-ACCAGCCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * **
27439224 GCACGCAAGGGAGACC-GCGTCGATCCCCGGTTTGTGCATTCTGCCTCTCCGGCCTG-CTAAGTG
65 GCACGCAGGGGGGACCAG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCC-GACTGAGCA
*
27439287 CCCGCACGCCCG-TTCGTGGGTTGAATTAG
128 CCCGCACGCCCGTTTCGTGGGTTGACTTAG
* * ** * *** ** *
27439316 GCATAGGGAGTTCATTCCATGTCTAACCCCAGCCGGACCGAGGGTTGTGGTAATGGGGCCGATAG
1 GCATACGGAGTTCATTCCAAGTCTAAGACCAGCCGGACCGAGGGTTGCGGTAGCAGGATCGACAG
* * * * ** * * * *
27439381 CACGCAGAGGGGGAACAGGCCGATCCCCGGCATGCGCATTATGCCTCTTCTACCGGCTCAACGCC
66 CACGCAG-GGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACC
* * * * *
27439446 CGTACACTCGTTTCGTGCGTTGACTTAT
130 CGCACGCCCGTTTCGTGGGTTGACTTAG
** * * ** * * * *
27439474 GCATGTGGAGTTCATTTCAAGTATAAGATTAGACTGGACCGAGGGTTGCAGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCAAGTCTAAGACCAG-CCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * * *
27439539 GCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGGGCATTTTGCCTCTCCGGCCGACTGAGCACC
65 GCACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACC
** * * *
27439604 CGCACGCTTGTTTTGTAGGTTGGCTTAG
130 CGCACGCCCGTTTCGTGGGTTGACTTAG
*
27439632 GCATACGGAGTTCATCCCAA-TCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
27439657 TATTTTAAGC
Statistics
Matches: 394, Mismatches: 96, Indels: 17
0.78 0.19 0.03
Matches are distributed among these distances:
156 42 0.11
157 92 0.23
158 228 0.58
159 32 0.08
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAAGTCTAAGACCAGCCGGACCGAGGGTTGCGGTAGCAGGATCGACAG
CACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCACCC
GCACGCCCGTTTCGTGGGTTGACTTAG
Found at i:27440364 original size:26 final size:26
Alignment explanation
Indices: 27440327--27440379 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27440317 GTTAACTTAG
*
27440327 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
27440353 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27440379 G
1 G
27440380 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27440772 original size:159 final size:161
Alignment explanation
Indices: 27440484--27440786 Score: 441
Period size: 159 Copynumber: 1.9 Consensus size: 161
27440474 TCGAGTGCCT
* *
27440484 GCATGCCTGTTTCCTGGGTTGGCCCTAGGCATAGGGAGTTCATTCCATGTCTAGCCCCAACCGGA
1 GCATGCATGTTTCCTGGGTTGGCCCTAGGCATAGGGAGTTCATTCCATGTCTAACCCCAACCGGA
* * ** * *
27440549 CCGAGGGTTTGTGGGCAGCGGGACCGACAGCATGCAGAGGGGGACCAGGCCGATCCCCGGCTTGC
66 CCGAGGGTTTGTGGGCAGCGGCACAGACAGCACACAGAGGGGGACCAGGCCGATCCACAGCTTGC
27440614 GCATTATGCCTCTCTGGCCGACTCAACGCCC
131 GCATTATGCCTCTCTGGCCGACTCAACGCCC
* * *
27440645 GCATGCATGTTTCGTGGGTTGG-CTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGG
1 GCATGCATGTTTCCTGGGTTGGCCCTAGGCATAGGGAGTTCATTCCATGTCT-AACCCCAACCGG
* * * *
27440709 ACCGAGGG-TTG-GGGCGGCGGCACAGGCAGCACACAGAGGGGGATCGGGCCGATCCACAGCTTG
65 ACCGAGGGTTTGTGGGCAGCGGCACAGACAGCACACAGAGGGGGACCAGGCCGATCCACAGCTTG
27440772 CGCATTATGCCTCTC
130 CGCATTATGCCTCTC
27440787 CGACTAGCTC
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
159 57 0.45
160 31 0.25
161 38 0.30
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (161 bp):
GCATGCATGTTTCCTGGGTTGGCCCTAGGCATAGGGAGTTCATTCCATGTCTAACCCCAACCGGA
CCGAGGGTTTGTGGGCAGCGGCACAGACAGCACACAGAGGGGGACCAGGCCGATCCACAGCTTGC
GCATTATGCCTCTCTGGCCGACTCAACGCCC
Found at i:27440830 original size:159 final size:160
Alignment explanation
Indices: 27440509--27440848 Score: 409
Period size: 159 Copynumber: 2.1 Consensus size: 160
27440499 GGGTTGGCCC
* * *
27440509 TAGGCATAGGGAGTTCATTCCATGTCTAGCCCCAACCGGACCGAGGGTTTGTGGGCAGCGGGACC
1 TAGGCATAGGGAGTTCATTCCATGTCTAACCCCAACCGGACCGAGGGTTTGTGGGCAGCGGCACA
** * * * * *
27440574 GACAGCATGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGGCCGACTCA
66 GACAGCACACAGAGGGGGACCAGGCCGATCCACAGCTTGCGCATTATGCCTCTCCGACAGACTCA
* * * * *
27440639 ACGCCCGCATGCATGTTTCGTGGGTTGGCT
131 ACACCCGCATGCATATTTCATGGGATGACT
* *
27440669 TAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGG-TTG-GGGCGGCGGCAC
1 TAGGCATAGGGAGTTCATTCCATGTCT-AACCCCAACCGGACCGAGGGTTTGTGGGCAGCGGCAC
* * *
27440732 AGGCAGCACACAGAGGGGGATCGGGCCGATCCACAGCTTGCGCATTATGCCTCTCCGACTAG-CT
65 AGACAGCACACAGAGGGGGACCAGGCCGATCCACAGCTTGCGCATTATGCCTCTCCGAC-AGACT
* *
27440796 CAGCACCCGTATGC-TCATTTCATGGGATGACT
129 CAACACCCGCATGCAT-ATTTCATGGGATGACT
**
27440828 TAGGCATACAGAGTTCATTCC
1 TAGGCATAGGGAGTTCATTCC
27440849 CAATCTAAGA
Statistics
Matches: 153, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
158 1 0.01
159 103 0.67
160 31 0.20
161 18 0.12
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.21
Consensus pattern (160 bp):
TAGGCATAGGGAGTTCATTCCATGTCTAACCCCAACCGGACCGAGGGTTTGTGGGCAGCGGCACA
GACAGCACACAGAGGGGGACCAGGCCGATCCACAGCTTGCGCATTATGCCTCTCCGACAGACTCA
ACACCCGCATGCATATTTCATGGGATGACT
Found at i:27441216 original size:26 final size:26
Alignment explanation
Indices: 27441186--27441238 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27441176 GTTGGCTTAG
*
27441186 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
27441212 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27441238 G
1 G
27441239 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27441237 original size:196 final size:197
Alignment explanation
Indices: 27440881--27441240 Score: 510
Period size: 196 Copynumber: 1.8 Consensus size: 197
27440871 GAGGGTTGCG
* **
27440881 GTAGCAGGATCAATAGCACATAAGGGGGGATCGAGCCGATCCCTAGCTTGTGCATTCTACCTCTC
1 GTAGCAGGATCAATAGCACATAAGGGGGGATCGAGCCGATCCCGAGCTTGCACATTCTACCTCTC
* ** *
27440946 CGATCGGCTGAGCGCCCGCACGTTCATTTTGTGAGTTGGCTTAGGCATATGGAGTTCATTCCATG
66 CGATCGACTGAGCGCCCGCACGTTCATTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * *
27441011 TCTAAGGATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGATCAAGGGTTGCAGCAGCAGGAC
131 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCAGCAGCAGGAC
27441076 TA
196 TA
* * * * * *
27441078 GTAGTAGGATCAGTAGCACA-CAGGGGGGATTGGGCCGATCCCCGA-CTTGCACATTCTGCCTCT
1 GTAGCAGGATCAATAGCACATAAGGGGGGATCGAGCCGAT-CCCGAGCTTGCACATTCTACCTCT
* * *
27441141 CCGATCGACTGAGTGCCCGTACCG-TCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
65 CCGATCGACTGAGCGCCCGCA-CGTTCATTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCA
27441205 TGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
129 TGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
27441241 TTTGAGCCAA
Statistics
Matches: 142, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
196 118 0.83
197 24 0.17
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.26
Consensus pattern (197 bp):
GTAGCAGGATCAATAGCACATAAGGGGGGATCGAGCCGATCCCGAGCTTGCACATTCTACCTCTC
CGATCGACTGAGCGCCCGCACGTTCATTTCATGAGTTGGCTTAGGCATACGGAGTTCATTCCATG
TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCAGCAGCAGGAC
TA
Found at i:27441324 original size:11 final size:11
Alignment explanation
Indices: 27441308--27441333 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
27441298 CCCAAGGCAC
27441308 CATCGCCGGAG
1 CATCGCCGGAG
27441319 CATCGCCGGAG
1 CATCGCCGGAG
27441330 CATC
1 CATC
27441334 ATCGGAGAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.38, G:0.31, T:0.12
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:27442147 original size:26 final size:26
Alignment explanation
Indices: 27442117--27442169 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27442107 GTTGACTTAG
*
27442117 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
27442143 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
27442169 G
1 G
27442170 ATGGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:27443852 original size:26 final size:26
Alignment explanation
Indices: 27443822--27443873 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27443812 TGGCTTAGGC
27443822 ATACGGAATTCATT-CCATGTCTAAGA
1 ATACGGAATTCATTCCCA-GTCTAAGA
*
27443848 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAATTCATTCCCAGTCTAAGA
27443874 TCTGACTGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACGGAATTCATTCCCAGTCTAAGA
Found at i:27444238 original size:26 final size:26
Alignment explanation
Indices: 27444201--27444253 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
27444191 GTTAACTTAG
27444201 GCATACTGAGTTCA-TCCTCAGTCTAA
1 GCATACTGAGTTCATTCC-CAGTCTAA
27444227 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACTG-AGTTCATTCCCAGTCTAA
27444253 G
1 G
27444254 TCAGACCGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACTGAGTTCATTCCCAGTCTAA
Found at i:27444521 original size:159 final size:158
Alignment explanation
Indices: 27444227--27444569 Score: 379
Period size: 159 Copynumber: 2.2 Consensus size: 158
27444217 CTCAGTCTAA
* * * * * *
27444227 GCATACGAAGTTCATTCCCAGTCTAAG--TCAGACCGAACGGAGGGTTGCGGCAGCAGGATTGAT
1 GCATACGAAGTTCATTCCCAGTCTAAGCCCCAG-TCGGACCGAGGGTTGCGGCAGCAGGACTGAC
* * * * *
27444290 AGCACGTAAGGGGGATCGGGCTGATCCCCAGCTTGCTCATTCTGCCTCTCCGACCGACTGAGTGC
65 AGCACGTAAGGGGGATCGGGCCGATCCCCAGCTTGCTCATTATGCCTCTCCAACCGACTCAGCGC
* *
27444355 CCACACGCTTGTTTCGTGGATTGGCTTAG
130 CCACACGCTCGTTTCGTGGATTGACTTAG
* * * * *
27444384 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACTGGC
1 GCATACGAAGTTCATTCCCA-GTCTAAGCCCCAGTCGGACCGAGGGTTGCGGCAGCAGGACTGAC
* * * * *
27444448 AGCACGTAGAGGGGGATTGGGCCGATCCTCGGCTTG-TGCATTATGCCTCTTCAACCGGCTCAGC
65 AGCACGTA-AGGGGGATCGGGCCGATCCCCAGCTTGCT-CATTATGCCTCTCCAACCGACTCAGC
** *
27444512 GCCTGCACGCTCGTTTCGTGGGTTGACTTAG
128 GCCCACACGCTCGTTTCGTGGATTGACTTAG
*
27444543 GCATACGAAGTTTATTCCCAGTCTAAG
1 GCATACGAAGTTCATTCCCAGTCTAAG
27444570 ATGGATCGGA
Statistics
Matches: 151, Mismatches: 29, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
156 3 0.02
157 21 0.14
158 32 0.21
159 92 0.61
160 3 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGCCCCAGTCGGACCGAGGGTTGCGGCAGCAGGACTGACA
GCACGTAAGGGGGATCGGGCCGATCCCCAGCTTGCTCATTATGCCTCTCCAACCGACTCAGCGCC
CACACGCTCGTTTCGTGGATTGACTTAG
Found at i:27445077 original size:26 final size:26
Alignment explanation
Indices: 27445041--27445093 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27445031 GTTGGCTTAG
27445041 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
27445067 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
27445093 G
1 G
27445094 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:27445608 original size:26 final size:26
Alignment explanation
Indices: 27445571--27445623 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27445561 GTTAACTTAG
*
27445571 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
27445597 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27445623 G
1 G
27445624 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27445952 original size:171 final size:169
Alignment explanation
Indices: 27445644--27445952 Score: 374
Period size: 171 Copynumber: 1.8 Consensus size: 169
27445634 ATCGAGGGTT
* * *
27445644 ACCGCAACAGGATCGACAGCACGTAGGGGGGACCGGGCCAATCCCCAGCTTGTGCATTCTGCCTC
1 ACCGCAACAGGATCGACAGCACGCAGGGGGGACCGGGCCAATCCCCAGCTTGCGCATTATGCCTC
* * * * * *
27445709 TCCGATCGATCGAGTGCCTGCATGCCTGTTTCCTGGGTTGGCCTAGGCATAGGGAGTTCATTCCA
66 TCCCACCGATCGAGCGCCTGCATGCCTGTTTCATGGGTTGACCTAGGCATACGGAGTTCATTCCA
27445774 TGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCAGG
131 TGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCAGG
* * ** *
27445813 ACCGACAACGGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCC
1 ACCG-CAACAGGATCGACAGCACGCAG-GGGGGACCGGGCCAATCCCCAGCTTGCGCATTATGCC
* * * *
27445878 TCTCCCACCG-GCTGAGCG-CTCGTATG-CTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCA
64 TCTCCCACCGATC-GAGCGCCT-GCATGCCT-GTTTCATGGGTTGACCTAGGCATACGGAGTTCA
27445940 TTCC-TAGTCTAAG
126 TTCCAT-GTCTAAG
27445953 ATTGGATCGG
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
169 4 0.03
170 26 0.22
171 86 0.74
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (169 bp):
ACCGCAACAGGATCGACAGCACGCAGGGGGGACCGGGCCAATCCCCAGCTTGCGCATTATGCCTC
TCCCACCGATCGAGCGCCTGCATGCCTGTTTCATGGGTTGACCTAGGCATACGGAGTTCATTCCA
TGTCTAAGCCCCAACCGGACCGAGGGTTGTGGTAGCAGG
Found at i:27446109 original size:159 final size:159
Alignment explanation
Indices: 27445824--27446443 Score: 405
Period size: 159 Copynumber: 3.8 Consensus size: 159
27445814 CCGACAACGG
* *
27445824 GATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCCACCGG
1 GATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCACATTATGCCTCTCCCACCGG
* * * ** * *
27445889 CTGAGCGCTCGTATGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
66 CTGAGCACCCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
27445954 TTGGATCGGACCGAGGGTTGCGACAGCAA
131 TTGGATCGGACCGAGGGTTGCGACAGCAA
* * **
27445983 GATCGACAGCACGCAG-GGGGGCACCAGG-TCGATCCCCGGCTTGCACATTTTGCCTCTCTGACC
1 GATCGACAGCACGCAGAGGGGG-ACCGGGCT-GATCCCCGGCTTGCACATTATGCCTCTCCCACC
* ** * *
27446046 GGTTGAGCACCCGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC-ATGTCTA
64 GGCTGAGCACCCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTA-GTCTA
**** * * * **
27446110 AG-CCCCAGTCAGA-CGAAAGGTTGTTG-CAGCGG
128 AGATTGGA-TCGGACCG-AGGGTTG-CGACAGCAA
* * * * * ***
27446142 GA-CTGGCAACACGCAGAGGGGAACCGGG-TCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTC
1 GATC-GACAGCACGCAGAGGGGGACCGGGCT-GATCCCCGGCTTGCACATTATGCCTCTCCCACC
* * * * * * *
27446205 TGCTCAGTACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTTAGTCTAA
64 GGCTGAGCACCCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
** * * * ** *
27446270 GATCAGACCGGACTGATTGGTTGGCGGTAGGCAG
129 GATTGGATCGGACCGA-GGGTT-GCGACA-GCAA
* * * *
27446304 GAATCGAATAGCACGCA-AGGGGGTGACTCGGGGCTGATCCCCAAGGCTTCCGCATTCTTGCCTC
1 G-ATCG-ACAGCACGCAGA-GGGG-GAC-C-GGGCTGATCCCC--GGCTTGCACATT-ATGCCTC
* * * * * * *
27446368 TCCGACTCGGGTGAGTACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATTACGGAGTTCAATT
57 TCCCAC-CGGCTGAGCACCCGCACACCCGTTTCATGGGTTGACTTAGGCA-TACGGAGTTC-ATT
27446433 CC-ATGTCTAAG
119 CCTA-GTCTAAG
27446444 CATAACGGAG
Statistics
Matches: 356, Mismatches: 75, Indels: 46
0.75 0.16 0.10
Matches are distributed among these distances:
158 11 0.03
159 217 0.61
160 14 0.04
161 2 0.01
162 4 0.01
163 3 0.01
164 12 0.03
165 2 0.01
166 1 0.00
167 10 0.03
168 1 0.00
169 11 0.03
170 9 0.03
171 37 0.10
172 11 0.03
173 11 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GATCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCACATTATGCCTCTCCCACCGG
CTGAGCACCCGCACACCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
TTGGATCGGACCGAGGGTTGCGACAGCAA
Found at i:27446239 original size:318 final size:331
Alignment explanation
Indices: 27445833--27446444 Score: 768
Period size: 318 Copynumber: 1.9 Consensus size: 331
27445823 GGATCGACAG
* * * * *
27445833 CACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCCACCGGCTGAGCGCT
1 CACGCAGAGGGGAACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCCACCGGCTCAGCACC
* * ** *
27445898 CGTATGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGG
66 CGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGG
*
27445963 ACCGA-GGGTT-GCGACA-GCAAG-ATCG-ACAGCACGC-AGGGGG-GCAC-CAGGTC-GATCCC
131 ACCGATGGGTTGGCGACAGGCAAGAATCGAACAGCACGCAAGGGGGTG-ACTCAGGGCTGATCCC
* * * * **
27446019 C-GGCTTGCACATT-TTGCCTCTCTGAC-CGGTTGAGCACCCGCACACCCGTTTTGTGGGTTGGC
195 CAGGCTTCCACATTCTTGCCTCTCCGACTCGGGTGAGCACCCGCACACCCATTTCATGGGTTGGC
*
27446081 TTAGGCA-TAGGGAGTTC-ATTCCATGTCTAAGCCCCAGTCAGACGAAAGGTTGTTGCAGCGGGA
260 TTAGGCATTACGGAGTTCAATTCCATGTCTAAGCCCCAGTCAGACGAAAGGTTGTTGCAGCGGGA
27446144 CTGGCAA
325 CTGGCAA
* *** * *
27446151 CACGCAGAGGGGAACCGGG-TCGATCCCCGGCTTGCGCATTATGCCTCTTCGGTCTGCTCAGTAC
1 CACGCAGAGGGGAACCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTCCCACCGGCTCAGCAC
*
27446215 CCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTTAGTCTAAGATCAGACCG
65 CCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCG
* * ** * * *
27446280 GACTGATTGGTTGGCGGTAGGCAGGAATCGAATAGCACGCAAGGGGGTGACTCGGGGCTGATCCC
130 GACCGATGGGTTGGCGACAGGCAAGAATCGAACAGCACGCAAGGGGGTGACTCAGGGCTGATCCC
* * * *
27446345 CAAGGCTTCCGCATTCTTGCCTCTCCGACTCGGGTGAGTACCCGCACGCTCATTTCATGGGTTGG
195 C-AGGCTTCCACATTCTTGCCTCTCCGACTCGGGTGAGCACCCGCACACCCATTTCATGGGTTGG
27446410 CTTAGGCATTACGGAGTTCAATTCCATGTCTAAGC
259 CTTAGGCATTACGGAGTTCAATTCCATGTCTAAGC
27446445 ATAACGGAGT
Statistics
Matches: 242, Mismatches: 36, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
317 1 0.00
318 115 0.48
319 4 0.02
320 4 0.02
321 4 0.02
322 4 0.02
323 8 0.03
324 8 0.03
325 5 0.02
326 7 0.03
328 10 0.04
329 12 0.05
330 36 0.15
331 9 0.04
332 15 0.06
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (331 bp):
CACGCAGAGGGGAACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTCCCACCGGCTCAGCACC
CGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGG
ACCGATGGGTTGGCGACAGGCAAGAATCGAACAGCACGCAAGGGGGTGACTCAGGGCTGATCCCC
AGGCTTCCACATTCTTGCCTCTCCGACTCGGGTGAGCACCCGCACACCCATTTCATGGGTTGGCT
TAGGCATTACGGAGTTCAATTCCATGTCTAAGCCCCAGTCAGACGAAAGGTTGTTGCAGCGGGAC
TGGCAA
Found at i:27446468 original size:27 final size:28
Alignment explanation
Indices: 27446415--27446470 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
27446405 GTTGGCTTAG
*
27446415 GCATTACGGAGTTCAATTCCATGTCTAA
1 GCATAACGGAGTTCAATTCCATGTCTAA
27446443 GCATAACGGAGTTC-ATTCCCA-GTCTAA
1 GCATAACGGAGTTCAATT-CCATGTCTAA
27446470 G
1 G
27446471 ACTCGGATCG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 10 0.38
28 16 0.62
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (28 bp):
GCATAACGGAGTTCAATTCCATGTCTAA
Found at i:27446683 original size:21 final size:21
Alignment explanation
Indices: 27446657--27446698 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
27446647 AGCCCCAGTC
*
27446657 GGACCGAGGGTTCTGGCAGCA
1 GGACCGAGGGTTCTGCCAGCA
27446678 GGACCGAGGGTTCTGCCAGCA
1 GGACCGAGGGTTCTGCCAGCA
27446699 CATAGAGGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.19, C:0.26, G:0.40, T:0.14
Consensus pattern (21 bp):
GGACCGAGGGTTCTGCCAGCA
Found at i:27447146 original size:159 final size:159
Alignment explanation
Indices: 27446822--27447247 Score: 370
Period size: 159 Copynumber: 2.7 Consensus size: 159
27446812 CTAAGCATTA
* * * * * * * *
27446822 GGAGTTCATTCCCAGTCTAAGATCGGATCGTACCGAGGGTTACGGCAGCAGGATCCG-TAGCACG
1 GGAGCTCATTCCCAGTCTAAGACCAGACCGAACCAAGGGTTATGGCAGCAGGA-CCGACAGCACG
* * * * * * * * * *
27446886 TA-AGGGGGACCGGGCC-GATGCCAGACTTGCGCATTCTG--TCTTCCGGC-GGCTGAGCACCTG
65 CAGAGGGGGACCGAGCCTG-TCCCCGGCTTGCGCATTATGCCTCTT-CGGCTGGCTCAACCCCCG
* * * * *
27446946 CACGC-CTGTTTCATTGGTTGGCTTAGGCATAG
128 CACGCTC-ATTTCGTGGGTTGACTTAGGCATAC
* * * *
27446978 GGAGTTCATTCCCTA-TCTAAGCCCCAG-CCGGACCAAGGGTTATGGCAGCGGGACCGACAGCAC
1 GGAGCTCATTCCC-AGTCTAAG-ACCAGACCGAACCAAGGGTTATGGCAGCAGGACCGACAGCAC
*
27447041 GCAGAGGGGGACC-AGGCC-GATCCTCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAACCCCC
64 GCAGAGGGGGACCGA-GCCTG-TCCCCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAACCCCC
27447104 GCACGCTCATTTCGTGGGTTGACTTAGGCATAC
127 GCACGCTCATTTCGTGGGTTGACTTAGGCATAC
** * * * *
27447137 GGAGCTCATTCCCAGTCTAAGATGAGATCGAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
1 GGAGCTCATTCCCAGTCTAAGACCAGACCGAACCAAGGGTTATGGCAGCAGGACCGACAGCACGC
* * *
27447202 AGGGGGGGACCGAGCCTGTCCCCGGCTTGTGCATTCTGCCTCTTCG
66 AGAGGGGGACCGAGCCTGTCCCCGGCTTGCGCATTATGCCTCTTCG
27447248 ACCAGTTAAG
Statistics
Matches: 218, Mismatches: 39, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
155 3 0.01
156 47 0.22
157 32 0.15
158 7 0.03
159 126 0.58
160 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (159 bp):
GGAGCTCATTCCCAGTCTAAGACCAGACCGAACCAAGGGTTATGGCAGCAGGACCGACAGCACGC
AGAGGGGGACCGAGCCTGTCCCCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAACCCCCGCAC
GCTCATTTCGTGGGTTGACTTAGGCATAC
Found at i:27447307 original size:159 final size:159
Alignment explanation
Indices: 27446953--27447318 Score: 373
Period size: 159 Copynumber: 2.3 Consensus size: 159
27446943 CTGCACGCCT
* * * *
27446953 GTTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCCTA-TCTAAGCCCCAGCCGGACCAAGGG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCACCAGCCGAACCAAGGG
* *
27447017 TTATGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTATGC
65 TTATGGCAGCAGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGC
* ** *
27447082 CTCTTCGGCTGGCTCAACCCCCGCACGCTC
130 CTCTTCGACCAGCTCAACCCCCACACGCTC
* * * * ** * *
27447112 ATTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAG-ATGAGATCGAACCGAGGG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAG-CCGAACCAAGGG
* * * * *
27447176 TTGTGGCAGCAGGATCGACAGCACGCAGGGGGGGACC-GAGCCTG-TCCCCGGCTTGTGCATTCT
65 TTATGGCAGCAGGACCGACAGCACGCAGAGGGGGACCAG-GCC-GATCCCCGGCTTGCGCATTAT
* ** * *
27447239 GCCTCTTCGACCAG-TTAAGTGCCCATATGCTC
128 GCCTCTTCGACCAGCTCAA-CCCCCACACGCTC
* **
27447271 GTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCTTGTCTAAGCA
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
27447319 TACAGAGTTC
Statistics
Matches: 166, Mismatches: 35, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
158 7 0.04
159 157 0.95
160 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACCAGCCGAACCAAGGGT
TATGGCAGCAGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCC
TCTTCGACCAGCTCAACCCCCACACGCTC
Found at i:27447478 original size:184 final size:183
Alignment explanation
Indices: 27447267--27447684 Score: 466
Period size: 184 Copynumber: 2.3 Consensus size: 183
27447257 GTGCCCATAT
* *
27447267 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCTTGTCTAAGCATACAGAGTTCATG
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACAGAGTTCATG
* * * * *
27447332 CCTGGTCCATGATCGGACCGGACCGAGGGTTGCGGCAGTAGGAT-TGACAGCACGCAGGGGGGAC
66 CCTAGTCCAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCAG-CAGCACGCA-GGGGGAC
* * * * * *
27447396 TGGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGGGCACCCG-CAC
129 TGGGCCGACCCCCAGCTTGCGAATTCTGCCTCTCCGGCCGACTGAG-ACCCGACAC
* * * * *
27447451 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-ATCTAAGTATACAGAGTTCAT
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTAT-TCCATGTCTAAGCATACAGAGTTCAT
* * * * * *
27447515 TCCTAGTCTAAGATCGAATCGGATCGAGGGTTGCGGTAGCAGGATCAGCAGCACGTAGGGGGACT
65 GCCTAGTCCAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGGGGGACT
* * * * ** *
27447580 GGGCCGACCCCCGGCTTGTGAATTCTGCCTCTTCGGTCGACTGAGTGCCGACAT
130 GGGCCGACCCCCAGCTTGCGAATTCTGCCTCTCCGGCCGACTGAGACCCGACAC
* *
27447634 GC-CTGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGC
1 GCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGC
27447685 CCTAGCCAGA
Statistics
Matches: 191, Mismatches: 38, Indels: 11
0.80 0.16 0.05
Matches are distributed among these distances:
182 7 0.04
183 83 0.43
184 98 0.51
185 3 0.02
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.26
Consensus pattern (183 bp):
GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATACAGAGTTCATG
CCTAGTCCAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGGGGGACTG
GGCCGACCCCCAGCTTGCGAATTCTGCCTCTCCGGCCGACTGAGACCCGACAC
Found at i:27447801 original size:159 final size:156
Alignment explanation
Indices: 27447571--27448002 Score: 408
Period size: 159 Copynumber: 2.7 Consensus size: 156
27447561 AGCAGCACGT
* * * * *
27447571 AGGGGGACTGGGCCGACCCCCGGCTTGTGAATTCTGCCTCTTCGGTCGACTGAGTG-CCGACA-T
1 AGGGGGAC-GGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTC-GTCGACTAAGTGCCCGACACT
* * *
27447634 GCCTGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCTAG-CCAGACCG
64 --C-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAGACCG
** *
27447698 AGGGTTGTGGCAGCGGGACCGACAGCACGCAG
125 AGGGTTACGGCAGCAGGACCGACAGCACGCAG
* *
27447730 AGGGGGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGTCCGACTCAGTGCCCGTACAC
1 AGGGGGA-CGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGT-CGACTAAGTGCCCG-ACAC
* * * ** *
27447795 TCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCAGACTAGACCGAG
63 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAGACCGAG
* * * *
27447859 GGTTACGGTAGTAGGATCGACAGCATGCAG
127 GGTTACGGCAGCAGGACCGACAGCACGCAG
* * * * * * *
27447889 GGGGGGACCGAGTCAGTCCCCGACTTACGCATTCTGCCTCTTCGATCGGCTAAGTGCCC-ACACG
1 AGGGGGA-CGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCG-TCGACTAAGTGCCCGACA--
*
27447953 CTCGTTTTG-GGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
62 CTCGTTTCGTGG-GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
27448003 ATATGGAGTT
Statistics
Matches: 224, Mismatches: 37, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
157 3 0.01
158 9 0.04
159 199 0.89
160 9 0.04
161 3 0.01
162 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (156 bp):
AGGGGGACGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGTCGACTAAGTGCCCGACACTCG
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGACCGAGGGTT
ACGGCAGCAGGACCGACAGCACGCAG
Found at i:27447809 original size:685 final size:693
Alignment explanation
Indices: 27446694--27448185 Score: 1816
Period size: 685 Copynumber: 2.2 Consensus size: 693
27446684 AGGGTTCTGC
* ** * *
27446694 CAGCA-CATAGAGGGGGACCAGG-CTGAT-CCTTGACTTGTACATTATGCCTCTCTGACCGGCTG
1 CAGCAGCAT-GAGGGGGACCAGGTC-GATCCCTAG-CTTGCGCATTATGCCTCTCCGGCCGGCTG
* * * * * * *
27446756 AGCGCTCGCACGCTCGTTTTGTGGGGTGATTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATT
63 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATT
* * * * *
27446821 AGGAGTTCATTCCCAGTCTAAGATCGGATCGTACCGAGGGTTACGGCAGCAGGATCCGTAGCACG
128 AAGAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTACGGCAGCAGGATCAGCAGCACG
** * *
27446886 TAAGGGGGACCGGGCCGATGCCAGACTTGCGCATTCTGTCTTCCGGCGGCTGAGCACCTGCACGC
193 TAAGGGGGACCGGGCCGACCCCAGACTTGCGAATTCTGTCTTCCGGCGACTGAGCACCTGCACGC
* *
27446951 CTGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCCTATCTAAGCCCCAGCCGGACCAAGG
258 CTGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGACCAAGG
* *
27447016 GTTATGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCCGATCCTCGGCTTGCGCATTATG
323 GTTATGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCGGCTTGCGCATTATG
* * * * *
27447081 CCTCTTCGGCTGGCTCAACCCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGCTCAT
388 CCTCTTCGGCCGACTCAACCCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGCTCAT
* **
27447146 TCCCAGTCTAAGATGAGATCGA-ACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGG
453 TCCCAGTCTAAGATCAGA-CGAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGG
* * ** * * *
27447210 ACCGAGCCTGTCCCCGGCTTGTGCATTCTGCCTCTTCGACCAGTTAAGTGCCCATATGCTCGTTT
517 ACCGAGCCAGTCCCCGACTTACGCATTCTGCCTCTTCGACCAGCTAAGTGCCCACACGCTCGTTT
* * **
27447275 CAT-GG-GTTGGCTTAGGCATACGGAGTTTATTCCTTGTCTAAGCATACAGAGTTCATGCCTGGT
582 --TGGGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATGCCCAGT
* * **
27447338 CCATGATCGGACCGGACCGAGGGTTGCGGCAGTAGGA-TTG-A-CA-G-
645 CCAAGATCGGACCGGACCGAAGGTTGCGGCAGTAGGACAAGCAGCAGGA
** * *
27447382 CA-C-GCA-G-GGGGGACTGGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGGGC
1 CAGCAGCATGAGGGGGACCAGGTCGATCCCTAGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGC
* *
27447443 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGTA-TACA
66 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATTA-A
* * * *
27447507 GAGTTCATTCCTAGTCTAAGATCGAATCGGATCGAGGGTTGCGGTAGCAGGATCAGCAGCACGT-
130 GAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTACGGCAGCAGGATCAGCAGCACGTA
* * * * ** *
27447571 AGGGGGACTGGGCCGACCCCCGGCTTGTGAATTCTGCCTCTT-CGGTCGACTGAGTGCC-GACAT
195 AGGGGGACCGGGCCGACCCCAGACTTGCGAATTCTG--TCTTCCGG-CGACTGAGCACCTG-CAC
* * * * *
27447634 GCCTGTTTCGTTGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCTAGCCAGACCGA
256 GCCTGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGACCAA
* * *
27447699 GGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGGCCAATCCCCGGCTTGCGCATTA
321 GGGTTATGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCGGCTTGCGCATTA
* *** * * *
27447764 TGCCTCTTCGTCCGACTCAGTGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTC
386 TGCCTCTTCGGCCGACTCAACCCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGCTC
* * * *
27447829 ATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTACGGTAGTAGGATCGACAGCATGCAGGGGGG
451 ATTCCCAGTCTAAGATCAGACGAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGG
* * *
27447894 GACCGAGTCAGTCCCCGACTTACGCATTCTGCCTCTTCGATCGGCTAAGTGCCCACACGCTCGTT
516 GACCGAGCCAGTCCCCGACTTACGCATTCTGCCTCTTCGACCAGCTAAGTGCCCACACGCTCGTT
** *
27447959 TTGGGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTC
581 TTGGGTGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATGCCCAGTC
* * *
27448024 TAAGATCGGACTGGACTGAAGGTTGCGGCAGTAGGACAAGCAGCAGGA
646 CAAGATCGGACCGGACCGAAGGTTGCGGCAGTAGGACAAGCAGCAGGA
* * * *
27448072 TCAGCAGCATGCAAGGGGGACCAGGTCGATCCCTGGCTTGCGCATTATACCTTTCCGGCCGACTG
1 -CAGCAGCATG--AGGGGGACCAGGTCGATCCCTAGCTTGCGCATTATGCCTCTCCGGCCGGCTG
* * * *
27448137 AGCGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATCCGGAGTTCAT
63 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
27448186 TCCATGTCTA
Statistics
Matches: 675, Mismatches: 106, Indels: 37
0.83 0.13 0.05
Matches are distributed among these distances:
683 32 0.05
684 153 0.23
685 386 0.57
686 1 0.00
687 4 0.01
688 4 0.01
689 1 0.00
691 2 0.00
692 1 0.00
693 3 0.00
694 1 0.00
697 87 0.13
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (693 bp):
CAGCAGCATGAGGGGGACCAGGTCGATCCCTAGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATTAAG
AGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTACGGCAGCAGGATCAGCAGCACGTAA
GGGGGACCGGGCCGACCCCAGACTTGCGAATTCTGTCTTCCGGCGACTGAGCACCTGCACGCCTG
TTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGACCAAGGGTT
ATGGCAGCGGGACCGACAGCACGCAGAGGGGGACCAGGCCAATCCCCGGCTTGCGCATTATGCCT
CTTCGGCCGACTCAACCCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGAAGCTCATTCC
CAGTCTAAGATCAGACGAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGGACCG
AGCCAGTCCCCGACTTACGCATTCTGCCTCTTCGACCAGCTAAGTGCCCACACGCTCGTTTTGGG
TGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATGCCCAGTCCAAGA
TCGGACCGGACCGAAGGTTGCGGCAGTAGGACAAGCAGCAGGA
Found at i:27448011 original size:26 final size:26
Alignment explanation
Indices: 27447975--27448027 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27447965 GTTGGCTTAG
27447975 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
27448001 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27448027 G
1 G
27448028 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27448818 original size:159 final size:158
Alignment explanation
Indices: 27448655--27449006 Score: 365
Period size: 158 Copynumber: 2.2 Consensus size: 158
27448645 CGCACGCTCA
* * ** * *
27448655 TTTCATTGGTTGGCTTAGGCATAGGGAGTTTATT-CCATGTCTAAGCCCCAACC-GAACC-AAGG
1 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGACCCAACCAG-ACCGAA-G
* **
27448717 GTTACGGCAGCGGGATCGGTAGCACACAGAAGGGGA-CTGGGTCGATCCCCGACTTGCGCATTAT
63 GTTACGGCAGCAGGATCGACAGCACACAG-AGGGGATC-GGGTCGATCCCCGACTTGCGCATTAT
27448781 GCCTCTCTGGTCGGCTCAATGCCCACATGCTTG
126 GCCTCTCTGGTCGGCTCAATGCCCACATGCTTG
* **
27448814 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTT
1 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCCAACCAGACCGAAGGTT
* * * *
27448879 GCGGCAGCAGGATCGACAGCACACAGGGGGGATCGGGTCGATCTCCGACTTGCGCATTCTGCCTC
66 ACGGCAGCAGGATCGACAGCACACAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTC
* * * ** * ** *
27448944 TCCT-TTCGGTTGAGCGCCCCCACACTCG
131 T-CTGGTCGGCTCAATGCCCACATGCTTG
*
27448972 TTTCATGGGTTGGA-TTAGGCATATAGAGTTCATTC
1 TTTCATGGGTT-GACTTAGGCATACAGAGTTCATTC
27449007 GATGTCTAAG
Statistics
Matches: 161, Mismatches: 26, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
158 81 0.50
159 74 0.46
160 6 0.04
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (158 bp):
TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCCAACCAGACCGAAGGTT
ACGGCAGCAGGATCGACAGCACACAGAGGGGATCGGGTCGATCCCCGACTTGCGCATTATGCCTC
TCTGGTCGGCTCAATGCCCACATGCTTG
Found at i:27448827 original size:502 final size:502
Alignment explanation
Indices: 27447342--27449223 Score: 1845
Period size: 502 Copynumber: 3.7 Consensus size: 502
27447332 CCTGGTCCAT
* * * *
27447342 GATCGGACCGGACCGAGGGTTGCGGCAGTAGGATTGACAGCACGCAGGGGGGA-CTGGGTCGATC
1 GATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATC-GGGTCAATC
* * ** * * *
27447406 C-CTAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGGGCACCCGCACGCTCGTTTCGTGGGTTGAC
65 CTCGA-CTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGAC
* * * *
27447470 TTAGGCATACGGAGTTCATCCCCA-ATCTAAGTATACAGAGTTCATTCCTAGTCTAAGATC-GAA
129 TTAGGCATACGGAGTTCA-CCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
* * * ** *
27447533 TCGGATC-GAGGGTTGCGG--TAGC--AGGATCAGCAGCA-CGTAGGGGGACTGGGCCGACCCCC
193 T-GGA-CAGAGGGTTGCGGACAAGCAGAGGATCAGCAGCATGGAAGGGGGACCAGGCCGATCCCC
* * * * * * * * *
27447592 GGCTTGTGAATTCTGCCTCTTCGGTCGACTGAGTG-CCGACATGC-CTGTTTCGTTGGTTGGCTT
256 GGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCG-CACGCTC-ATTTCATGGGTTGGCTT
* * * *
27447655 AGGCATAGGGAGTTTATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGCGGGACCGA
319 AGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGA-CGG
* * * *
27447720 CAGCACGCAGAGGGGGA-TCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGTCCGACTCAG
383 CAGCACGCAGAGGGGGACT-GGGCCGATCCCCGACTTGCGCATTATGCCTCTTGGT-CGGCTCAG
*
27447784 TGCCCGTACA-CTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
446 TGCCC--ACAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
27447842 GATCAGACTAGACCGAGGGTTACGGTAGTAGGATCGACAGCATGCAGGGGGGGACCGAGTCAGTC
1 GATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA-GGGGGGATCGGGTCAATC
* * * * * *
27447907 CCCGACTTACGCATTCTGCCTCTTCGATCGGCTAAGTGCCCACACGCTCGTTTTG-GGTGTTGGC
65 CTCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACGCTCGTTTCGTGG-GTTGAC
** ** *
27447971 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACT
129 TTAGGCATACGGAGTTCACCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACT
* * * *
27448036 GGACTGAAGGTTGCGGCAGTAGGACAAGCAGCAGGATCAGCAGCATGCAAGGGGGACCAGGTCGA
194 GGACAGAGGGTT---GC----GGACAAGCAG-AGGATCAGCAGCATGGAAGGGGGACCAGGCCGA
* * * * **
27448101 TCCCTGGCTTGCGCATTATACCTTTCCGGCCGACTGAGCGCCCGCACGCTTGTTTCATGGGTTGG
251 TCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGG
* * *
27448166 CTTAGGCATCCGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCATCGGGAC
316 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGAC
* ** * * * * * *
27448231 TGGCAGCACGTAG-GGAGGGACCAGGCCGATCCCCGTCGTGCGTATTATTCCTCTTCGGCCAGCT
381 -GGCAGCACGCAGAGG-GGGACTGGGCCGATCCCCGACTTGCGCATTATGCCTCTT-GGTCGGCT
* * ** *
27448295 CAGTGCCCGCACGCTCATTTTGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
443 CAGTGCCCACA-GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
27448356 GATCGGATCGGACTGAGGGTTGCGGTAGCAAGATCGACAGTACGTAGGGGGGATCGGGTCAATCC
1 GATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCAATCC
* ** * *
27448421 TCGGCTTACGCATTCTGCCTCTCCGATCGATTGAGTGCCCACACGCTTGTTTCGTGGGTTGACTT
66 TCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTT
* *
27448486 AGGCATACGGTGTTCACCCCCA-GTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACTG
131 AGGCATACGGAGTTCA-CCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTG
* **
27448550 GATC-GAGGGTTGC-GACAA-CA-A-GATCGGCAGCATGGAAGGGGGGACCAGGCCGATCCCTTG
195 GA-CAGAGGGTTGCGGACAAGCAGAGGATCAGCAGCATGGAA-GGGGGACCAGGCCGATCCCCGG
* *
27448610 CTTGCGCATTCTGCCTCTCCGGCCAACTGAGCGCCCGCACGCTCATTTCATTGGTTGGCTTAGGC
258 CTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGC
* * * * ** *
27448675 ATAGGGAGTTTATTCCATGTCTAAGCCCCAACC-GAACCAAGGGTTACGGCAGCGGGATCGGTAG
323 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAG-ACCGAGGGTTGTGGCAGCGGGA-CGGCAG
* * * *
27448739 CACACAGAAGGGGACTGGGTCGATCCCCGACTTGCGCATTATGCCTCTCTGGTCGGCTCAATGCC
386 CACGCAGAGGGGGACTGGGCCGATCCCCGACTTGCGCATTATGCCTCT-TGGTCGGCTCAGTGCC
* *
27448804 CACATGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
450 CACA-GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
27448858 GATCGGACCAGACCGAAGGTTGCGGCAGCAGGATCGACAGCACACAGGGGGGATCGGGTCGAT-C
1 GATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCAATCC
* ** * * * *
27448922 TCCGACTTGCGCATTCTGCCTCTCCTTTCGGTTGAGCGCCCCCACACTCGTTTCATGGGTTGGA-
66 T-CGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTT-GAC
** ** * * *
27448986 TTAGGCATATAGAGTTCATTCGATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
129 TTAGGCATACGGAGTTCACCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACT
* * * * *
27449051 AGACAGAGGGTTGCGGCAGCAAGACCAGCAGTAGGATCAACAGCATGCAGGGGGGATC-GGACCG
194 GGACAGAGGGTTGCGG-A-C---A--AGCAG-AGGATCAGCAGCATGGAAGGGGGACCAGG-CCG
** * * * * *
27449115 ATCCCCTACTTACGCATTCTGCCTCTCCGGCTGGCTGAGTGCCTGCACGCTCATTTCATGGGTTG
250 ATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTG
* *
27449180 GCTTAGGCATACAGAGTTCATTCCACGTCTAAGCCCCAGCCAGA
315 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
27449224 TTGAGGGCTA
Statistics
Matches: 1129, Mismatches: 199, Indels: 95
0.79 0.14 0.07
Matches are distributed among these distances:
500 45 0.04
501 137 0.12
502 395 0.35
503 6 0.01
504 5 0.00
505 6 0.01
508 3 0.00
510 6 0.01
511 2 0.00
512 4 0.00
513 250 0.22
514 266 0.24
515 4 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (502 bp):
GATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCAATCC
TCGACTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTT
AGGCATACGGAGTTCACCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGG
ACAGAGGGTTGCGGACAAGCAGAGGATCAGCAGCATGGAAGGGGGACCAGGCCGATCCCCGGCTT
GCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATA
CGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGACGGCAGCACGC
AGAGGGGGACTGGGCCGATCCCCGACTTGCGCATTATGCCTCTTGGTCGGCTCAGTGCCCACAGC
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:27448990 original size:158 final size:155
Alignment explanation
Indices: 27448514--27449006 Score: 415
Period size: 159 Copynumber: 3.1 Consensus size: 155
27448504 CCCAGTCTAA
* * * * * * *
27448514 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAACAAGATCGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGAC-CGACCGAAGGTTGCGGCAGCAGGATCGGCA
* * * * * **
27448579 GCATGGA-AGGGGGGACCAGGCCGATCCCTTG-CTTGCGCATTCTGCCTCTCCGGCCAACTGAGC
65 GCA--CACAGGGGGGA-CGGGTCGATCCC--GACTTGCGCATTCTGCCTCTCCTGTCGGCTGAGC
* * * *
27448642 GCCCGCACGCTCATTTCATTGGTTGGCTTAG
125 GCCCACACGCTCGTTTCATGGGTTGGATTAG
** * ** * *
27448673 GCATAGGGAGTTTATT-CCATGTCTAAGCCCCA-ACCGAACC-AAGGGTTACGGCAGCGGGATCG
1 GCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCG-ACCGAA-GGTTGCGGCAGCAGGATCG
* * * *
27448735 GTAGCACACAGAAGGGGACTGGGTCGATCCCCGACTTGCGCATTATGCCTCT-CTGGTCGGCTCA
62 GCAGCACACAG-GGGGGAC-GGGTCGAT-CCCGACTTGCGCATTCTGCCTCTCCT-GTCGGCTGA
** * *
27448799 ATGCCCACATGCTTGTTTCATGGGTT-GACTTAG
123 GCGCCCACACGCTCGTTTCATGGGTTGGA-TTAG
* *
27448832 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAAGGTTGCGGCAGCAGGATCGGCA
* *
27448897 GCACACAGGGGGGATCGGGTCGATCTCCGACTTGCGCATTCTGCCTCTCCTTTCGGTTGAGCGCC
65 GCACACAGGGGGGA-CGGGTCGATC-CCGACTTGCGCATTCTGCCTCTCCTGTCGGCTGAGCGCC
* *
27448962 CCCACACTCGTTTCATGGGTTGGATTAG
128 CACACGCTCGTTTCATGGGTTGGATTAG
*
27448990 GCATATAGAGTTCATTC
1 GCATACAGAGTTCATTC
27449007 GATGTCTAAG
Statistics
Matches: 260, Mismatches: 55, Indels: 39
0.73 0.16 0.11
Matches are distributed among these distances:
157 2 0.01
158 91 0.35
159 156 0.60
160 11 0.04
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (155 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAAGGTTGCGGCAGCAGGATCGGCAG
CACACAGGGGGGACGGGTCGATCCCGACTTGCGCATTCTGCCTCTCCTGTCGGCTGAGCGCCCAC
ACGCTCGTTTCATGGGTTGGATTAG
Found at i:27449429 original size:367 final size:354
Alignment explanation
Indices: 27448884--27449578 Score: 806
Period size: 367 Copynumber: 1.9 Consensus size: 354
27448874 AGGTTGCGGC
* * * * **
27448884 AGCAGGATCGACAGCACACAGGGGGGATCGGGTCGATCTCCGACTTGCGCATTCTGCCTCTCCTT
1 AGCAGGATCGACAGCACACAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGG
* ** * * * * *
27448949 TCGGTTGAGCGCCCCCACACTCGTTTCATGGGTTGGATTAGGCATATAGAGTTCATTCGATGTCT
66 CCGACTGAACGCCCCCACACTCATTTCATGGGTTGGATTAGGCATACAGAGTTCATCCCATGTCT
* * *
27449014 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGGCAGCAAGACCAG
131 AAGCATACAGAGTTCATTCCCAGTCTAACATCAAACCAGACAGAGGGTTGCGGCAGC-AG----G
*
27449079 CAGTAGGATCAACAGCATGCAGGGGGGATCGGACCGATCCCCT-ACTTACGCATTCTGCCTCTCC
191 -A-T-CGAT-AACA-C--GCAGGGGGGATCGGACCGAT-CCCTGACTTACGCATTCTGCCTCTCC
* * *
27449143 GGCTGGCTGAGTG-CCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACG
248 AGCCGACTGAGTGCCCT-CACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACG
*
27449207 TCTAAGCCCCAGCCAGATTGAGGGCTATGGCAGCAGGACCGGT
312 TCTAAGACCCAGCCAGATTGAGGGCTATGGCAGCAGGACCGGT
* *
27449250 AGCAGGATCGACAGCACACAGAGGGGGACCGGGTTGATCCCC-AGCTTGCGCATTATACCTTTCC
1 AGCAGGATCGACAGCACACAG-GGGGGACCGGGTCGATCCCCGA-CTTGCGCATTATACCTCTCC
* * ** *
27449314 GGCCGACTGAACGCCCGCACGCTCATTTTGTGGGTT-GACTTAGGCATACGGAGTTCATCCCCA-
64 GGCCGACTGAACGCCCCCACACTCATTTCATGGGTTGGA-TTAGGCATACAGAGTTCAT-CCCAT
* * * *
27449377 GTCTAAGCTTACAGAGTTCATTCCCAGTCTAACATCAAACCGGACCGAGGGTTGCGGTAGCAGGA
127 GTCTAAGCATACAGAGTTCATTCCCAGTCTAACATCAAACCAGACAGAGGGTTGCGGCAGCAGGA
* ** * * * *
27449442 TCGATAACACGTAGGGGGGATCGGGTCGATCCTTGGCTTGCGCATTCTGCCTCTCCAGCCGATTG
192 TCGATAACACGCAGGGGGGATCGGACCGATCCCTGACTTACGCATTCTGCCTCTCCAGCCGACTG
* * *
27449507 AGTGCCCTCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCC
257 AGTGCCCTCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCTAAGACCC
27449572 AGCCAGA
322 AGCCAGA
27449579 CCGAGGGTTG
Statistics
Matches: 280, Mismatches: 43, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
354 3 0.01
355 105 0.38
356 3 0.01
357 1 0.00
358 4 0.01
359 3 0.01
360 1 0.00
361 1 0.00
362 1 0.00
366 26 0.09
367 130 0.46
368 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (354 bp):
AGCAGGATCGACAGCACACAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTATACCTCTCCGG
CCGACTGAACGCCCCCACACTCATTTCATGGGTTGGATTAGGCATACAGAGTTCATCCCATGTCT
AAGCATACAGAGTTCATTCCCAGTCTAACATCAAACCAGACAGAGGGTTGCGGCAGCAGGATCGA
TAACACGCAGGGGGGATCGGACCGATCCCTGACTTACGCATTCTGCCTCTCCAGCCGACTGAGTG
CCCTCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCACGTCTAAGACCCAGCC
AGATTGAGGGCTATGGCAGCAGGACCGGT
Found at i:27449857 original size:158 final size:158
Alignment explanation
Indices: 27449390--27449884 Score: 530
Period size: 158 Copynumber: 3.1 Consensus size: 158
27449380 TAAGCTTACA
* * * *
27449390 GAGTTCATTCCCAGTCTAACATCAAACCGGACCGAGGGTTGCGGTAGCAGGATCGATAACACGTA
1 GAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
* * * * *
27449455 GGGGGGATCGGGTCGAT-CCTTGGCTTGCGCATTCTGCCTCTCCAGCCGATTGAGTGCCCTCACG
66 GGGGGGATCGGGTCGATCCCCT-GCTTGCGCATTCTACCTCTCCAGCCGACTGAGCGCCCGCACG
27449519 CTCATTTCGTGGGTTGGCTTAGGCATACG
130 CTCATTTCGTGGGTTGGCTTAGGCATACG
* * * * * * * * ** *
27449548 GAGTTCATT-CCATGTCTAAGACCCAGCCAGACCGAGGGTTGTGGCATCGGGATTGGCAGCATGC
1 GAGTTCATTCCCA-GTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGC
* * * * ** * * *
27449612 AGAGGGGGATCGGGCCAATCCCC-GTCTTGCGCATTATTCCTCTCTGGCCGGCTCAGCACCCGCA
65 AG-GGGGGATCGGGTCGATCCCCTG-CTTGCGCATTCTACCTCTCCAGCCGACTGAGCGCCCGCA
* *
27449676 CGTTCATTTCGTGGGTTGACTTAGGCATACG
128 CGCTCATTTCGTGGGTTGGCTTAGGCATACG
* *** * * * *
27449707 GAGTTCATTCCCAATCTAAGATTGGACCGGACAGAGGGTTACGACAGCAGGATCGATAGGACGCA
1 GAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
* * *
27449772 GGGGGGACCGGGTCGATCCCCTGCTTGTGCATTCTACCTCTCCAGTCGACTGAGCGCCCGCACGC
66 GGGGGGATCGGGTCGATCCCCTGCTTGCGCATTCTACCTCTCCAGCCGACTGAGCGCCCGCACGC
*
27449837 TCATTTCATGGGTTGGCTTAGGCATACG
131 TCATTTCGTGGGTTGGCTTAGGCATACG
27449865 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
27449885 CATATGCAGT
Statistics
Matches: 266, Mismatches: 64, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
157 6 0.02
158 138 0.52
159 117 0.44
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
GGGGGGATCGGGTCGATCCCCTGCTTGCGCATTCTACCTCTCCAGCCGACTGAGCGCCCGCACGC
TCATTTCGTGGGTTGGCTTAGGCATACG
Found at i:27449888 original size:26 final size:26
Alignment explanation
Indices: 27449858--27449910 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
27449848 GTTGGCTTAG
*
27449858 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGCAGTTCATTCCTA-GTCTAA
* *
27449884 GCATATGCAGTTCGTTCCTAGTCTAA
1 GCATACGCAGTTCATTCCTAGTCTAA
27449910 G
1 G
27449911 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCTAGTCTAA
Found at i:27450158 original size:868 final size:870
Alignment explanation
Indices: 27448470--27450454 Score: 2374
Period size: 868 Copynumber: 2.3 Consensus size: 870
27448460 CACACGCTTG
* *
27448470 TTTCGTGGGTTGACTTAGGCATACGGTGTTCACCCCCAGTCTAAGCATACAGAGTTCATTCCTAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCACCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
* * * *
27448535 TCTAAGATCAGACTGGATCGAGGGTTGCGACAACAAGATCGGCAGCATGGAAGGGGGGACCAGGC
66 TCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAAGATCGGCAGCA-CGAAGGGGGGACCGGGC
*
27448600 CGATCCCTTGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCGCCCGCACGCTCATTTCATTGGT
130 CGAT-CCTTGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCATTGGT
* *
27448665 TGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAACCGAACCAAGGGTTACGGCAGCGG
194 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAGCCGAACCAAGGGTTACGGCAGCGG
* * * *
27448730 GATCGGTAGCACACAGAAGGGGACTGGGTCGATCCCCGACTTGCGCATTATGCCTCTCTGGTCGG
258 GATCGGCAGCACACAGAAGGGGACTGGGCCAATCCCCGACTTGCGCATTATGCCTCTCTGGCCGG
** * * *
27448795 CTCAATGCCCACATGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
323 CTCAACACCCACACGCTTATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGA
* * * * *
27448860 TCGGACCAGACCGAAGGTTGCGGCAGCAGGATCGACAGCACACAGGGGGGATCGGGTCGATCTCC
388 TCGGACCAGACAGAAGGTTACGACAGCAGGATCGACAGCACACAGGGGGGACCGGGTCGATCCCC
* ** ** *
27448925 GACTTGCGCATTCTGCCTCTCCTTTCGGTTGAGCGCCCCCACACTCGTTTCATGGGTTGGATTAG
453 GACTTGCGCATTCTACCTCTCCAGTCGACTGAGCGCCCCCACACTCATTTCATGGGTTGGATTAG
* * *
27448990 GCATATAGAGTTCATTCGATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
518 GCATACAGAGTTCATTCCATGTCTAAGCATACGCAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * *
27449055 AGAGGGTTGCGGCAGCAAGACCAGCAGTAGGATCAACAGCATGCAGGGGGGATCGGACCGATCCC
583 AGAGGGTTGCAGCAGCAAGACCAGCAGTAAGATCAACAGCATGCAGGGGAGACCGGACCGATACC
* ** ** * *
27449120 CTACTTACGCATTCTGCCTCTCCGGCTGGCTGAGTGCCTGCACGCTCATTTCATGGGTTGGCTTA
648 CGACTTACGCATTCAACCTCTCCGGCTGGCTGAGCACCCGCACGCTCATTTAATGGGTTGGCTTA
* ** * *
27449185 GGCATACAGAGTTCATTCCACGTCTAAGCCCCAGCCAGATTGAGGGCTATGGCAGCAGGACCGGT
713 AGCATACAGAGTTCATTCCACGTCTAAGCCCCAGCCAGACCGAGGGCTATGGCAGCAGGACCAGC
* * * *
27449250 AGCAGGATCGACAGCACACAGAGGGGGACCGGGTTGATCCCCAGCTTGCGCATTATACCTT-T-C
778 AGCAGGATCAACAGCACACAGAGGGGGACAGGGCTGATCCCCAGCTTGCACATTAT-CCTTCTCC
*
27449313 -CGG-C-CGACTGAACGCCCGCACGCTCA
842 ACGGCCACGACTGAACACCCGCACGCTCA
* * *
27449339 TTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCTTACAGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCACCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
* * * ** * ** * * * *
27449404 TCTAACATCAAACCGGACCGAGGGTTGCGGTAGCAGGATCGATAACACGTAGGGGGGATCGGGTC
66 TCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAAGATCGGCAGCACGAAGGGGGGACCGGGCC
* * * * * *
27449469 GATCCTTGGCTTGCGCATTCTGCCTCTCCAGCCGATTGAGTGCCCTCACGCTCATTTCGTGGGTT
131 GATCCTT-GCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCATTGGTT
* * ** *
27449534 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGCC-AGACCGAGGGTTGTGGCATCGG
195 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAGCCGA-ACCAAGGGTTACGGCAGCGG
* ** * * *
27449598 GATTGGCAGCATGCAGAGGGGGA-TCGGGCCAATCCCCGTCTTGCGCATTATTCCTCTCTGGCCG
258 GATCGGCAGCACACAGAAGGGGACT-GGGCCAATCCCCGACTTGCGCATTATGCCTCTCTGGCCG
* * * *
27449662 GCTCAGCACCCGCACG-TTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
322 GCTCAACACCCACACGCTT-ATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
* * * * * *
27449726 GATTGGACCGGACAGAGGGTTACGACAGCAGGATCGATAGGACGCAGGGGGGACCGGGTCGATCC
386 GATCGGACCAGACAGAAGGTTACGACAGCAGGATCGACAGCACACAGGGGGGACCGGGTCGATCC
* * * *
27449791 CCTG-CTTGTGCATTCTACCTCTCCAGTCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGGCT
451 CC-GACTTGCGCATTCTACCTCTCCAGTCGACTGAGCGCCCCCACACTCATTTCATGGGTTGGAT
* * * * *
27449855 TAGGCATACGGAGTTCATTCCATGTCTAAGCATATGCAGTTCGTTCCTAGTCTAAGATCGGACCA
515 TAGGCATACAGAGTTCATTCCATGTCTAAGCATACGCAGTTCATTCCCAGTCTAAGATCAGACCA
* * *** * * *
27449920 GACCGAGGGTTGCAGCAGCAGGACCAGCAGTAAGATCGGTAGCATGTAGGAGGAGACCGGGCTGA
580 GACAGAGGGTTGCAGCAGCAAGACCAGCAGTAAGATCAACAGCATGCAGG-GGAGACCGGACCGA
* * * * *
27449985 TACTCGACTTGCGCATTCAACCTCTTCGG-TCGGTTGAGCACCCGCATGCTCATTTAATGGGTTG
644 TACCCGACTTACGCATTCAACCTCTCCGGCT-GGCTGAGCACCCGCACGCTCATTTAATGGGTTG
* * * * * * * *
27450049 GCTTAAGCGTGCGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTTTGGCAGCAGGA
708 GCTTAAGCATACAGAGTTCATTCCACGTCTAAGCCCCAGCCAGACCGAGGGCTATGGCAGCAGGA
** *** * *
27450114 -CAGCAGTGGGATCAACAGCATGTAGAGGGGGACAGGGCTGATCCCCATCTTGCACATTATGCTT
773 CCAGCAGCAGGATCAACAGCACACAGAGGGGGACAGGGCTGATCCCCAGCTTGCACATTATCCTT
* * *
27450178 CTCCAGTCGGCCTCTCCGATCGACTGAGCACCCGTACGCTCG
838 CTCCA--CGG-----CC-A-CGACTGAACACCCGCACGCTCA
27450220 TTTCGTGGGTTGACTTAGGCATACGGAGTTCACCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCACCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
* * *
27450285 TCTAAGATCGGATCGGATCGAGGGTTGCGACAGCAAGATCGGCAGTACGCAA-GGGGGACCGGGC
66 TCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAAGATCGGCAGCACG-AAGGGGGGACCGGGC
* ** * *
27450349 CGATCCTCAGCTTGCGCATTCTGCCTCTCCGGTTGACTGAGCGCCCGCACGCCCGTTTCATTGGT
130 CGATCCT-TGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCATTGGT
*
27450414 TGGCTTAGGCATAGGGAGTTCATTCGATGTCTAAGCCCAGC
194 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGC
27450455 TGGACTAAGG
Statistics
Matches: 925, Mismatches: 168, Indels: 35
0.82 0.15 0.03
Matches are distributed among these distances:
867 11 0.01
868 479 0.52
869 211 0.23
872 3 0.00
878 1 0.00
880 6 0.01
881 213 0.23
882 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (870 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCACCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
TCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAAGATCGGCAGCACGAAGGGGGGACCGGGCC
GATCCTTGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCATTGGTTG
GCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGAACCAAGGGTTACGGCAGCGGGAT
CGGCAGCACACAGAAGGGGACTGGGCCAATCCCCGACTTGCGCATTATGCCTCTCTGGCCGGCTC
AACACCCACACGCTTATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCG
GACCAGACAGAAGGTTACGACAGCAGGATCGACAGCACACAGGGGGGACCGGGTCGATCCCCGAC
TTGCGCATTCTACCTCTCCAGTCGACTGAGCGCCCCCACACTCATTTCATGGGTTGGATTAGGCA
TACAGAGTTCATTCCATGTCTAAGCATACGCAGTTCATTCCCAGTCTAAGATCAGACCAGACAGA
GGGTTGCAGCAGCAAGACCAGCAGTAAGATCAACAGCATGCAGGGGAGACCGGACCGATACCCGA
CTTACGCATTCAACCTCTCCGGCTGGCTGAGCACCCGCACGCTCATTTAATGGGTTGGCTTAAGC
ATACAGAGTTCATTCCACGTCTAAGCCCCAGCCAGACCGAGGGCTATGGCAGCAGGACCAGCAGC
AGGATCAACAGCACACAGAGGGGGACAGGGCTGATCCCCAGCTTGCACATTATCCTTCTCCACGG
CCACGACTGAACACCCGCACGCTCA
Found at i:27450267 original size:26 final size:26
Alignment explanation
Indices: 27450238--27450290 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27450228 GTTGACTTAG
*
27450238 GCATACGGAGTTCACCCCCAGTCTAA
1 GCATACAGAGTTCACCCCCAGTCTAA
**
27450264 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACCCCCAGTCTAA
27450290 G
1 G
27450291 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCACCCCCAGTCTAA
Found at i:27450966 original size:26 final size:26
Alignment explanation
Indices: 27450929--27450981 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27450919 GTTGACTTAG
27450929 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
27450955 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27450981 G
1 G
27450982 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27451433 original size:160 final size:159
Alignment explanation
Indices: 27450955--27451625 Score: 505
Period size: 160 Copynumber: 4.2 Consensus size: 159
27450945 CCCAGTCTAA
* * * * * ** **
27450955 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAACAGGATC-GGT
1 GCATACAGAATTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGTAGGATCGGGT
* * ** * * * * * * *
27451019 AGCACGCAGAGGGGATCATGCCAATCTCCGGCTTGCGTATTCTGCCTCTTCGGTTGGTTGCGCAC
66 AGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCAC
* * *
27451084 CCGTACACCCATTTCGTGGGCTGGCTTAG
131 CCGCACACTCATTTCGTGGGTTGGCTTAG
* ** * ** * * *
27451113 GTATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-CCAGACCGAGGGTTATGGCAGTGGGA-CCG
1 GCATACAGAATTCATTCCCA-GTCTAAGATC-AGACCAGACCGAGGGTTACGGCAGTAGGATCGG
* * * * ** * * *
27451175 GTAGCACGTAGAGGGGGACTGGGTCGATCGTCGGCTTACGCATTATACCTCTCCGG-CTGGCTCA
64 GTAGCACGCAG-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGGTC-GGCTGA
* * * *
27451239 GCGCCCGCACGCTCATTTTGTGGGTTGACTTAG
127 GCACCCGCACACTCATTTCGTGGGTTGGCTTAG
* ** *
27451272 GCATACAGAATTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTACAGCAGTAGGATCGGGA
1 GCATACAGAATTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGTAGGATCGGG-
* * *
27451337 TAGCACACAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
65 TAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCA
*
27451402 CCCGTACACTCATTTCGTGGGTTGGCTTAG
130 CCCGCACACTCATTTCGTGGGTTGGCTTAG
* * * *
27451432 GCATACA-AAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGTAGGACCAGC
1 GCATACAGAA-TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGTAGGATC-G-
* * * **
27451496 AGCAAGATCGGCAGCACGCAGGGGGG-CCGGGCCGATCCCCGACTTGCGTAATT-TACCTCTCTA
63 -G---G-T----AGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCG-CATTCTACCTCTCCG
* * *
27451559 GTCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
118 GTCGGCTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAG
* *
27451601 GCATAC-GAAATTCATCCCCAATCTA
1 GCATACAG-AATTCATTCCCAGTCTA
27451626 TGCATACGGA
Statistics
Matches: 402, Mismatches: 87, Indels: 37
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 56 0.14
159 102 0.25
160 126 0.31
161 10 0.02
163 1 0.00
166 3 0.01
169 83 0.21
170 18 0.04
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACAGAATTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGTAGGATCGGGT
AGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCAC
CCGCACACTCATTTCGTGGGTTGGCTTAG
Found at i:27451918 original size:158 final size:157
Alignment explanation
Indices: 27451683--27452287 Score: 572
Period size: 158 Copynumber: 3.8 Consensus size: 157
27451673 TACGGCAGCA
* * * *
27451683 GGATCGACAGTACGC-AGGAGGGACCAAGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACTG
1 GGATCGACAGCACGCAAGG-GGGACC-GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG
* * * *
27451747 ACTGAGCATCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
64 ACTAAGCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAG
*
27451812 CCCTAGTCGGATCGAGGGTTGTGGTAGTG
129 CCCTAGCCGGATCGAGGGTTGTGGTAGTG
* * * *
27451841 GGATCGACAGCACGCAAGGGGGACCGCGTCGATCCCCGGTTTGCGCATTCTGCCTCTCCGGCCGG
1 GGATCGACAGCACGCAAGGGGGACCG-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGA
** * * * *
27451906 CTAAGTGCCCGCACGTCCATTTCGTGGGTTGAATTAGGCATAGGGAGTTCATTCCATGTCTAGGC
65 CTAAGCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
*
27451971 CCTAGCCGGACCGAGGGTTGTGGTAGTG
130 CCTAGCCGGATCGAGGGTTGTGGTAGTG
** * * * * * *
27451999 GGGCCGATAGCACGCAGAGGGGGAACAGGCCGATCCCCGGCATGCGCATTATGCCTCTTCTACCG
1 GGATCGACAGCACGCA-AGGGGG-ACCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCG
* * * * * * * *
27452064 GCTCAATG--CCCGTACGCTCGTTTCGTGCGTTGACTTATGCAT-GTGGAGTTCATTTCAAGTAT
64 ACT-AA-GCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAG-GGAGTTCATTCCATGTCT
** * * * **
27452126 AAG-ATTAGACCAGATCGAGGGTTGCGGCAGCA
126 AAGCCCTAG-CCGGATCGAGGGTTGTGGTAGTG
* * ** * * *
27452158 GGATCGACAGCACGCAGGGGGGATCGGGCCGATCCCTAGCTTGGGCATTTTGCCTCTCCGATCGA
1 GGATCGACAGCACGCAAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGA
* * ** * * *
27452223 TTGAGCACCCGCACGCTTGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 CTAAGCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
27452288 GTACGGAGTT
Statistics
Matches: 358, Mismatches: 76, Indels: 25
0.78 0.17 0.05
Matches are distributed among these distances:
156 1 0.00
157 2 0.01
158 233 0.65
159 116 0.32
160 5 0.01
161 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
GGATCGACAGCACGCAAGGGGGACCGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGAC
TAAGCACCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
CTAGCCGGATCGAGGGTTGTGGTAGTG
Found at i:27452312 original size:21 final size:26
Alignment explanation
Indices: 27452263--27452321 Score: 83
Period size: 21 Copynumber: 2.5 Consensus size: 26
27452253 GGCTTAGGCA
27452263 TACGGAGTTCATTCCATGTCTAAGCG
1 TACGGAGTTCATTCCATGTCTAAGCG
27452289 TACGGAGTTC-TT-CAT-T-TAAG-G
1 TACGGAGTTCATTCCATGTCTAAGCG
27452310 TACGGAGTTCAT
1 TACGGAGTTCAT
27452322 CCAATCTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
21 11 0.34
22 5 0.16
23 1 0.03
24 3 0.09
25 2 0.06
26 10 0.31
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.34
Consensus pattern (26 bp):
TACGGAGTTCATTCCATGTCTAAGCG
Found at i:27453053 original size:26 final size:26
Alignment explanation
Indices: 27453001--27453053 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27452991 GTTGACTTAG
*
27453001 GCATACGGAGTTCATCCCTAGTGTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* * *
27453027 GCATATGGAGTTCATTCCTGGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
27453053 G
1 G
27453054 ATCGCACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:27453334 original size:158 final size:159
Alignment explanation
Indices: 27453127--27453455 Score: 437
Period size: 158 Copynumber: 2.1 Consensus size: 159
27453117 CTGACTTTCA
* * * *
27453127 CATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGCCAGAGGG
1 CATTATGCCTCTCCAGCCGACTCAGCGCCCGCACGCACGTTTCATGGGTTGGCTTAGCCAGAGGG
* * * * **
27453192 AGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCGGGACCGACAGCATGCAG
66 AGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTAGGGCAGCGGCACAGACAGCACACAG
*
27453257 AGGGGGACC-AGGTCGATCC-CCGCTTGCG
131 AGGGGGACCGA-GCCGATCCACCGCTTGCG
** * * * *
27453285 CATTATGCCTCTCTGGCCGACTCAGCGCCCGCATGCACGTTTCGTGGGTTGGCTTAGGCATAGGG
1 CATTATGCCTCTCCAGCCGACTCAGCGCCCGCACGCACGTTTCATGGGTTGGCTTAGCCAGAGGG
* * *
27453350 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGGGGCAGCGGCACAGGCAGCACACAG
66 AGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTAGGGCAGCGGCACAGACAGCACACAG
* *
27453415 AGGGGGATCGAGCCGATCCACGGCTTGCG
131 AGGGGGACCGAGCCGATCCACCGCTTGCG
27453444 CATTATGCCTCT
1 CATTATGCCTCT
27453456 TCGACCAGCT
Statistics
Matches: 147, Mismatches: 22, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
158 126 0.86
159 21 0.14
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.20
Consensus pattern (159 bp):
CATTATGCCTCTCCAGCCGACTCAGCGCCCGCACGCACGTTTCATGGGTTGGCTTAGCCAGAGGG
AGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTAGGGCAGCGGCACAGACAGCACACAG
AGGGGGACCGAGCCGATCCACCGCTTGCG
Found at i:27453539 original size:159 final size:158
Alignment explanation
Indices: 27453192--27453527 Score: 401
Period size: 159 Copynumber: 2.1 Consensus size: 158
27453182 AGCCAGAGGG
* * ** * * **
27453192 AGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCGGGACCGACAGCATGCAG
1 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGGGGCAGCGGCACAGACAGCACACAG
* *
27453257 AGGGGGACCAGGTCGATCCCCGCTTGCGCATTATGCCTCTCTGGCCGACTCAGCGCCCGCATGCA
66 AGGGGGACCAGGCCGATCCCCGCTTGCGCATTATGCCTCTCTGACCGACTCAGCGCCCGCATGCA
* * * ***
27453322 CGTTTCGTGGGTTGGCTTAGGCATAGGG
131 CATTTCGTGGGATGACTTAGGCATACAA
*
27453350 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGGGGCAGCGGCACAGGCAGCACACAG
1 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGGGGCAGCGGCACAGACAGCACACAG
* * * *
27453415 AGGGGGATC-GAGCCGATCCACGGCTTGCGCATTATGCCTCT-TCGACC-AGCTCAGTGCCCGTA
66 AGGGGGACCAG-GCCGATCC-CCGCTTGCGCATTATGCCTCTCT-GACCGA-CTCAGCGCCCGCA
*
27453477 TGCTCATTTCGTGGGATGACTTAGGCATACAA
127 TGCACATTTCGTGGGATGACTTAGGCATACAA
27453509 AGTTCATTCCCA-GTCTAAG
1 AGTTCATT-CCATGTCTAAG
27453528 ATCTGACCGG
Statistics
Matches: 151, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
157 1 0.01
158 73 0.48
159 74 0.49
160 3 0.02
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (158 bp):
AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGGGGCAGCGGCACAGACAGCACACAG
AGGGGGACCAGGCCGATCCCCGCTTGCGCATTATGCCTCTCTGACCGACTCAGCGCCCGCATGCA
CATTTCGTGGGATGACTTAGGCATACAA
Found at i:27453696 original size:26 final size:26
Alignment explanation
Indices: 27453660--27453712 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27453650 GTTGGCTTAG
27453660 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
27453686 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27453712 G
1 G
27453713 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27453885 original size:26 final size:26
Alignment explanation
Indices: 27453856--27453908 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27453846 GTTGGCTTAG
27453856 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27453882 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27453908 G
1 G
27453909 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27454813 original size:26 final size:26
Alignment explanation
Indices: 27454783--27454835 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27454773 GTTGACTTAG
27454783 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27454809 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27454835 G
1 G
27454836 ATGGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27455442 original size:185 final size:185
Alignment explanation
Indices: 27455119--27455713 Score: 649
Period size: 185 Copynumber: 3.2 Consensus size: 185
27455109 GTTGACTTAG
* * ** * *
27455119 GCATATGGAGTTCATTCCCAATCTAAGATTAGACTGGACCAAGGGTTGCGGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCAAGGGTTACAGCAGCAGGATTGACA
* * * * *
27455184 GTACGTAGGAAGGGACCAGGTCGATCCTCGGCTTGCGTATTCTGCCTCTCTGGCCGGCTGAGCGC
66 GCACGTAGGAAGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGC
* * * *
27455249 CCGCACGCTTATTTCGAGGGTTGGTTTTGGCATATGGAGTTCATTCCATGTCTAA
131 CCGCACGCTCATTTCGAGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * *
27455304 GCATACGGAGCTCATTCCCAATCTAAGATCGGACCACACCAAGGGTTACAGCAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCAAGGGTTACAGCAGCAGGATTGACA
** * *
27455369 GCAC-TCAGGGGGGGACCAGGTCGGTCCCCGACTTGTGCATTCTGCCTC-CTTGGCCGACTGAGC
66 GCACGT-AGGAAGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTC-TGGCCGACTGAGC
**
27455432 GCCCGCACGCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
129 GCCCGCACGCTCATTTCGAGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
*
27455489 GAATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCAAGGGTTGTGGCAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCAAGGG-T-T---A-CA-G--CAGC-
* * * * * * * * *
27455554 GTAGGATTGACAACACGCAGAGTA-GGATCGGGCCAATCCCCAACTTGCGCATTCTGCCTCTCCG
56 --AGGATTGACAGCACGTAG-GAAGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTG
* * * * * *
27455618 GCC-AGCTGAGCGCCTGCAAGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGC
118 GCCGA-CTGAGCGCCCGCACGCTCATTTCGAGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
27455682 CTAA
182 CTAA
*
27455686 GCATACGGAGTTCATTCCCAGTCTAAGA
1 GCATACGGAGTTCATTCCCAATCTAAGA
27455714 GTTTGAGCCA
Statistics
Matches: 344, Mismatches: 48, Indels: 24
0.83 0.12 0.06
Matches are distributed among these distances:
184 2 0.01
185 198 0.58
186 1 0.00
187 1 0.00
190 1 0.00
191 2 0.01
192 1 0.00
194 4 0.01
196 1 0.00
197 131 0.38
198 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCAAGGGTTACAGCAGCAGGATTGACA
GCACGTAGGAAGGGACCAGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGC
CCGCACGCTCATTTCGAGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:27455513 original size:26 final size:26
Alignment explanation
Indices: 27455465--27455516 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27455455 TGGCTTAGGC
*
27455465 ATACGGAGTTCATTCCATGTCTAAGA
1 ATACGGAGTTCATTCCATATCTAAGA
27455491 ATACGGAGTTCATTCCCA-ATCTAAGA
1 ATACGGAGTTCATT-CCATATCTAAGA
27455517 TTGGACCAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATATCTAAGA
Found at i:27456113 original size:26 final size:26
Alignment explanation
Indices: 27456063--27456115 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27456053 GTTGACTTAG
* * *
27456063 GCATACGGATTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAATCTAA
*
27456089 GCATACGGAGTTCATTCACAATCTAA
1 GCATACGGAGTTCATCCACAATCTAA
27456115 G
1 G
27456116 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAATCTAA
Found at i:27456393 original size:159 final size:158
Alignment explanation
Indices: 27456130--27456420 Score: 370
Period size: 159 Copynumber: 1.8 Consensus size: 158
27456120 GATCGGATCG
* * * * *
27456130 AGGGTTGTGGCAGCAGGATCGACAGCACATCAAGGGGATCGGGTCGATCCCCGGCTTGCGCATTC
1 AGGGTTGTGGCAGCAGGACCGACAGCACAGCAAGGGGATCGGGCCGATCCCCGACTTGCGCATTA
* * * * **
27456195 TACCTCTCCAACCGGTTGAGCACCCACACGCTCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTC
66 TACCTCTCCAACCGGCTCAGCACCCACACGCTCGTTTTGTGAGTTGACTTAGGCATACAGAGTTC
27456260 ATTCCATGTCTAAGCCCCAGTCGGACCA
131 ATTCCATGTCTAAGCCCCAGTCGGACCA
*
27456288 AGGGTTGTGGCAGC-GAGACCGACAGCAC-GCAGATGGGGATCGGGCCGATCCCCGACTTGTGCA
1 AGGGTTGTGGCAGCAG-GACCGACAGCACAGCA-A-GGGGATCGGGCCGATCCCCGACTTGCGCA
* *** ***
27456351 TTATGCCTCTCCGGTCGGCTCAGCACCTGGACGCTCGTTTTGTGAGTTGACTTAGGCATACAGAG
63 TTATACCTCTCCAACCGGCTCAGCACCCACACGCTCGTTTTGTGAGTTGACTTAGGCATACAGAG
27456416 TTCAT
128 TTCAT
27456421 ACCCAGTCTA
Statistics
Matches: 111, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
157 3 0.03
158 26 0.23
159 82 0.74
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
AGGGTTGTGGCAGCAGGACCGACAGCACAGCAAGGGGATCGGGCCGATCCCCGACTTGCGCATTA
TACCTCTCCAACCGGCTCAGCACCCACACGCTCGTTTTGTGAGTTGACTTAGGCATACAGAGTTC
ATTCCATGTCTAAGCCCCAGTCGGACCA
Found at i:27456474 original size:159 final size:159
Alignment explanation
Indices: 27456311--27456613 Score: 344
Period size: 159 Copynumber: 1.9 Consensus size: 159
27456301 CGAGACCGAC
* ** * **
27456311 AGCACGCAGATGG-GGATCGGGCCGATCCCC-GACTTGTGCATTATGCCTCTCCGGTCGGCTCAG
1 AGCACGCAG-GGGTGGATCGGGCCGATCCCCAG-CTTACGCATTATGCCTCTCCGGCCAACTCAG
** * *
27456374 C-ACCTGGACGCTCGTTTTGTGAGTTGACTTAGGCATACAG-AGTTCATACCCAGTCTAAGATCA
64 CAACC-ACACGCTCGTTTCGTGAGTTGACTTAGGAATAC-GCAGTTCATACCCAGTCTAAGATCA
27456437 GACCAGACCGAGGGTTGCAGCAGTAGGATTAAT
127 GACCAGACCGAGGGTTGCAGCAGTAGGATTAAT
* ** * * * *
27456470 AGCACGTAGGGGTGGATCGGGTTGGTCCCCAGCTTACGCATTCTGCCTCTCTGGCCAACTGAGCA
1 AGCACGCAGGGGTGGATCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCCGGCCAACTCAGCA
* * * *
27456535 ACCACACGCTCGTTTCGTGGGTTGGCTTAGGAATACGCAGTTCATTCCCAGTCTAAGATCAGATC
66 ACCACACGCTCGTTTCGTGAGTTGACTTAGGAATACGCAGTTCATACCCAGTCTAAGATCAGACC
*
27456600 GGACCGAGGGTTGC
131 AGACCGAGGGTTGC
27456614 GGTAGCAGGA
Statistics
Matches: 118, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
158 3 0.03
159 111 0.94
160 4 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (159 bp):
AGCACGCAGGGGTGGATCGGGCCGATCCCCAGCTTACGCATTATGCCTCTCCGGCCAACTCAGCA
ACCACACGCTCGTTTCGTGAGTTGACTTAGGAATACGCAGTTCATACCCAGTCTAAGATCAGACC
AGACCGAGGGTTGCAGCAGTAGGATTAAT
Found at i:27456941 original size:26 final size:26
Alignment explanation
Indices: 27456905--27456957 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27456895 GTTTGCTTAG
27456905 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
**
27456931 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27456957 G
1 G
27456958 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27457237 original size:158 final size:158
Alignment explanation
Indices: 27456932--27457443 Score: 431
Period size: 158 Copynumber: 3.2 Consensus size: 158
27456922 CCAGTCTAAG
* * * * * * *
27456932 CATACAGAGTTCATTGCCAGTCTAAGATCAGATCAGACCAAAGGTTGCGGCAGCAGGATCGGCAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGACAG
* * * * *
27456997 CACGCAAGGGGGATCAGGCCGATCCCCAGCTTGCGTATTCTGCCTCTCCGATCGGTTGAGCGTCC
66 CACGCAAGGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGACC
* *
27457062 GCACGCCCTTTTGGTGGGTTGGCTTAGC
131 GCACGCCCGTTTCGTGGGTTGGCTTAGC
* * *
27457090 CATAGGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGTAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGACAG
* * * * * * * *
27457154 CACGTAGGGGTGGATC-GGACTGGTCCCCGGGTTGCGCATTCTGCCTCTCTGGCCAGCTGAGC-A
66 CACGCAAGGG-GGATCAGG-CCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGA
* *
27457217 CCTGCACGCTCGTTTCGTGGGTTGGCTTAGG
129 CC-GCACGCCCGTTTCGTGGGTTGGCTTAGC
* * * * *
27457248 CATACGTAGTTCATTCCCAATCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAAGACCAGCAA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGC-AG----G-AT
* * * * * * **
27457313 CAGAATTGGTAGCATGCAAGGGGGACCGGGCCGATCCCC-GACTTGCCCATTCTACCTCTCCGGT
60 C-G-A----CAGCACGCAAGGGGGATCAGGCCGATCCCCAG-CTTGCGCATTCTGCCTCTCCGAC
* * * * *
27457377 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGG
118 CAGCTGAGCGACCGCACGCCCGTTTCGTGGGTTGGCTTAGC
27457418 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
27457444 CCCCAGCCGG
Statistics
Matches: 283, Mismatches: 51, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
157 54 0.19
158 88 0.31
159 33 0.12
160 2 0.01
164 1 0.00
165 2 0.01
166 1 0.00
167 1 0.00
169 4 0.01
170 84 0.30
171 13 0.05
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGACAG
CACGCAAGGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCAGCTGAGCGACC
GCACGCCCGTTTCGTGGGTTGGCTTAGC
Done.