Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 288 of 402
Found at i:27457624 original size:26 final size:26
Alignment explanation
Indices: 27457587--27457639 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27457577 GTTTGCTTAG
*
27457587 GCATACGAAGTTGATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
27457613 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
27457639 G
1 G
27457640 ATTAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27458270 original size:26 final size:26
Alignment explanation
Indices: 27458240--27458292 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27458230 GTTGACTTAG
27458240 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
27458266 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27458292 G
1 G
27458293 AATGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27458772 original size:26 final size:26
Alignment explanation
Indices: 27458741--27458792 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27458731 TTGGCTTAGA
*
27458741 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
27458767 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
27458793 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:27459675 original size:26 final size:25
Alignment explanation
Indices: 27459609--27459687 Score: 86
Period size: 26 Copynumber: 3.0 Consensus size: 25
27459599 GTTGACTTAG
* * *
27459609 GCATACAGAGTTCAACCCCAATCTAA
1 GCATACGGAGTTC-ATCCCAGTCTAA
*
27459635 GCATACGAAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATCC-CAGTCTAA
*
27459661 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCA-TCCCAGTCTAA
27459687 G
1 G
27459688 ATCGGATCGG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.07
26 39 0.87
27 3 0.07
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:27459860 original size:26 final size:26
Alignment explanation
Indices: 27459830--27459882 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27459820 GTTAGCTTAG
27459830 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
27459856 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
27459882 G
1 G
27459883 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:27460728 original size:158 final size:156
Alignment explanation
Indices: 27460256--27460751 Score: 491
Period size: 158 Copynumber: 3.1 Consensus size: 156
27460246 CTAAGCAAAT
* * *
27460256 GGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGGATCGACAGCACG
1 GGAGTTCATT-CCATGTCTAAGAT-AGACTGGACTGAGGGTTACGGCAGCAGGATCGACAGCACG
* * * * * * * * * *
27460320 TAGGAGGGACCAGACCGATCCCTGGCTTTCGAATTCTACCTCTCTGGCCGGTTAAGCGCCTGCAC
64 TAGGGGGGACCGGGCCGATCCC-GGCTTACGCATTCTGCCTTTCCGACCGGCTAAGCGCCTGCAC
*
27460385 GC-CTGTTTCATGGGTTGGCTTAGGCATAG
128 GCTC-GTTTCATGGGTTGGCTTAGGCATAC
* ** * * * *
27460414 GGAGTTCATTCCATGTGTAAGCCCCAGTC-GGACCT-AGGGTTATGGCAGCGGGACCGACAGCAC
1 GGAGTTCATTCCATGTCTAAG--ATAGACTGGA-CTGAGGGTTACGGCAGCAGGATCGACAGCAC
* * * * * * * *
27460477 GTAGAGGGGGACCGGGCTGATCCCCTGCTTGCTCATTATGCCTCTT-CGATCGGCTCAGCGCCCG
63 GTAG-GGGGGACCGGGCCGAT-CCCGGCTTACGCATTCTGCCT-TTCCGACCGGCTAAGCGCCTG
* **
27460541 CACGCTCGTTTCGTGGGTTAACTTAGGCATAC
125 CACGCTCGTTTCATGGGTTGGCTTAGGCATAC
*
27460573 GGAGTTCATTCCCA-GTCTAAGATAGGACTAGACTGAGGGTTACGGCAGCAGGATCGACAGCACG
1 GGAGTTCATT-CCATGTCTAAGATA-GACTGGACTGAGGGTTACGGCAGCAGGATCGACAGCACG
* * *
27460637 TAGGGGGGATCGGGCCGGTCCACGGCTTACGCATTCTGCCTTTCCGACCGGCTAAGTGCCTGCAC
64 TAGGGGGGACCGGGCCGATCC-CGGCTTACGCATTCTGCCTTTCCGACCGGCTAAGCGCCTGCAC
* *
27460702 GCTCGTTTTATGGGTTGGCTTAGGCATAT
128 GCTCGTTTCATGGGTTGGCTTAGGCATAC
27460731 GGAGTTCATTCCATGTCTAAG
1 GGAGTTCATTCCATGTCTAAG
27460752 CATATGGAGT
Statistics
Matches: 268, Mismatches: 55, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
157 11 0.04
158 136 0.51
159 113 0.42
160 8 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (156 bp):
GGAGTTCATTCCATGTCTAAGATAGACTGGACTGAGGGTTACGGCAGCAGGATCGACAGCACGTA
GGGGGGACCGGGCCGATCCCGGCTTACGCATTCTGCCTTTCCGACCGGCTAAGCGCCTGCACGCT
CGTTTCATGGGTTGGCTTAGGCATAC
Found at i:27460761 original size:26 final size:26
Alignment explanation
Indices: 27460725--27460777 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27460715 GTTGGCTTAG
*
27460725 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTACATTCCCA-GTCTAA
27460751 GCATATGGAGTACATTCCCAGTCTAA
1 GCATATGGAGTACATTCCCAGTCTAA
27460777 G
1 G
27460778 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTACATTCCCAGTCTAA
Found at i:27461057 original size:13 final size:13
Alignment explanation
Indices: 27461039--27461063 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27461029 TGTGTATTAT
27461039 GCCTCTCTGGCCA
1 GCCTCTCTGGCCA
27461052 GCCTCTCTGGCC
1 GCCTCTCTGGCC
27461064 GGCTGAGTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.48, G:0.24, T:0.24
Consensus pattern (13 bp):
GCCTCTCTGGCCA
Found at i:27461155 original size:26 final size:26
Alignment explanation
Indices: 27461103--27461155 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27461093 GTTGACTCAG
*
27461103 GCATACGGAGTTCATCTCCAGTTTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
27461129 GCATACGGAGTTCAT-TCCTAGTCTAA
1 GCATACGGAGTTCATCTCC-AGTCTAA
27461155 G
1 G
27461156 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:27461531 original size:26 final size:26
Alignment explanation
Indices: 27461501--27461553 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27461491 GTTGACTTAG
*
27461501 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27461527 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27461553 G
1 G
27461554 ATAAAATTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27462224 original size:170 final size:168
Alignment explanation
Indices: 27461901--27462235 Score: 440
Period size: 170 Copynumber: 2.0 Consensus size: 168
27461891 CGACAGTAGA
* * * * * *
27461901 ATCGATAGCACGCAAGGGGATCGGGCCGTCTCTGGCTTGCGCATTCTGCCTCTCCGCCCGGCTGA
1 ATCGACAGCACGCAAGGGGATCAGGCCGTCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGA
* *
27461966 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCAG
66 GCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGACCAG
**
27462031 ACTGGATTAAGGGTTGCGGTAGCAGGACCAGTAACAAG
131 ACTGGACCAAGGGTTGCGGTAGCAGGACCAGTAACAAG
* *
27462069 ATCGACAGCACGCAGGGGGGATCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTTCGACCGGCT
1 ATCGACAGCACGCA-AGGGGATCAGGCCG-TCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCT
* * * * *
27462134 GAGTGCCCGTACGCTCATTTCCTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCC
64 GAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCCA-GTCTAAG-A
* * *
27462198 CCAGTC-GGACCAAGGGTTGTGGTAGCAGGACCGGTAAC
127 CCAGACTGGACCAAGGGTTGCGGTAGCAGGACCAGTAAC
27462236 GGGATCTGTA
Statistics
Matches: 143, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
168 13 0.09
169 15 0.10
170 111 0.78
171 4 0.03
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (168 bp):
ATCGACAGCACGCAAGGGGATCAGGCCGTCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGA
GCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGACCAG
ACTGGACCAAGGGTTGCGGTAGCAGGACCAGTAACAAG
Found at i:27462384 original size:26 final size:26
Alignment explanation
Indices: 27462353--27462405 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27462343 GTTGAGTTAG
*
27462353 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27462379 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27462405 G
1 G
27462406 ATAGAATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27462746 original size:26 final size:26
Alignment explanation
Indices: 27462696--27462748 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27462686 GTTGGCTTAG
* *
27462696 GCATATGGATTTCATTCCATTTCTAA
1 GCATATGGAGTTCATTCCATGTCTAA
27462722 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATATGGAGTTCATT-CCATGTCTAA
27462748 G
1 G
27462749 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATGTCTAA
Found at i:27463454 original size:26 final size:26
Alignment explanation
Indices: 27463417--27463469 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
27463407 GTTGACTTAG
27463417 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
27463443 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
27463469 G
1 G
27463470 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:27463839 original size:159 final size:159
Alignment explanation
Indices: 27463443--27463962 Score: 494
Period size: 159 Copynumber: 3.3 Consensus size: 159
27463433 CCTAGTCTAA
* * *
27463443 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAAGGTTGCGGCAGTAGG-TTCGGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGCGGCAGCAGGATT-GGC
* * * *
27463507 AGCTCGCAT-GAGGGATCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCA
65 AGCACGCATGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCA
* * *
27463571 CCTACACGCCCGTTTCTTGGATTGGCTTAG
130 CCTACACGCTCGTTTCATGGGTTGGCTTAG
** * ** * * * **
27463601 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCAGACCGAAGGTTGTGGTAGCGGGACCGG
1 GCATACAGAGTTCATTCCCA-GTCTAAGATCGGA-TCAGACCGAAGGTTGCGGCAGCAGGATTGG
* * * * ** * * * *
27463664 TAACACACA-GAAGGGGATCGGGTCGATCCCCGGCTCACGCATTATACCTCTCCGGTTGGCTCAG
64 CAGCACGCATG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
* ** * * *
27463728 CGCCTGTACGCTCATTTCGTGGGTTGACTTAG
128 CACCTACACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
27463760 GCATACAAAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCAGGATTGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGCGGCAGCAGGATTGGCA
* * * * * *
27463825 GCACGCATGGGGGGATTGGGTTGGTCCCCAGTTTGCGCATTCTGCCTCTCCAGTCGGCTGAGCAC
66 GCACGCATGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCAC
*
27463890 CCACACGCTCGTTTCATGGGTTGGCTTAG
131 CTACACGCTCGTTTCATGGGTTGGCTTAG
* * * *
27463919 GCATACGGAGTTCATTCCTATTCTAAGATCGGACCAGACC-AAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGG
27463963 GTTACGATAG
Statistics
Matches: 273, Mismatches: 81, Indels: 16
0.74 0.22 0.04
Matches are distributed among these distances:
157 5 0.02
158 50 0.18
159 213 0.78
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGCGGCAGCAGGATTGGCA
GCACGCATGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCAC
CTACACGCTCGTTTCATGGGTTGGCTTAG
Found at i:27464140 original size:26 final size:26
Alignment explanation
Indices: 27464104--27464153 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
27464094 TTGACTTAGG
*
27464104 CATACGTAGTTCATCCCTAGTCTACA
1 CATACGGAGTTCATCCCTAGTCTACA
* *
27464130 CATACGGAGTTTATTCCTAGTCTA
1 CATACGGAGTTCATCCCTAGTCTA
27464154 AGATTAAACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (26 bp):
CATACGGAGTTCATCCCTAGTCTACA
Found at i:27465525 original size:159 final size:160
Alignment explanation
Indices: 27465336--27465738 Score: 444
Period size: 159 Copynumber: 2.5 Consensus size: 160
27465326 CGCACACCCG
* * *
27465336 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCTCAGCCAGACCGAGGGTT
* * * * * *
27465401 GTGGCAGCGGGACTGGCAGCACATAGAGGGGGATC-GGGTCGATCCTC-GACTTGTGCATTATGC
66 GTGGCAGCAGGACTGGCAGCACACAGAGGGGGACCAGGCT-GATCCACAG-CTTGCGCATTATGC
* **
27465464 CTCTCCGGCCAAC-ACAGTGCCCACACGCTC-A
129 CTCTCCGACCAACTA-ACCGCCCACACGCTCGA
* * * * *
27465495 TTTCATGGGTTGACTTACGCATACGAAGTTCATTCCCA-ATCTAAG-ATCAGAGCAGACCGAGGG
1 TTTCATGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCCTCAG-CCAGACCGAGGG
** ** * *
27465558 TTGTGGCAGCAGGA-TCGATAGCATGCAGGGGGGGACCAGGCTGATCCACAGCTTGCGCATTCTG
64 TTGTGGCAGCAGGACT-GGCAGCACACAGAGGGGGACCAGGCTGATCCACAGCTTGCGCATTATG
**
27465622 CCTCTCCGACCGGCTAACCGCCCACACGCTCGA
128 CCTCTCCGACCAACTAACCGCCCACACGCTCGA
*
27465655 -TTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCTCAGCCGGACCGAGGGTT
1 TTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCTCAGCCAGACCGAGGGTT
* *
27465719 GTGGTAGCAGGACCGGCAGC
66 GTGGCAGCAGGACTGGCAGC
27465739 GAGATTGGCA
Statistics
Matches: 199, Mismatches: 35, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
158 7 0.04
159 179 0.90
160 13 0.07
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (160 bp):
TTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCTCAGCCAGACCGAGGGTT
GTGGCAGCAGGACTGGCAGCACACAGAGGGGGACCAGGCTGATCCACAGCTTGCGCATTATGCCT
CTCCGACCAACTAACCGCCCACACGCTCGA
Found at i:27466279 original size:26 final size:26
Alignment explanation
Indices: 27466243--27466295 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27466233 GTTGACTTAG
27466243 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27466269 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27466295 G
1 G
27466296 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27466457 original size:26 final size:26
Alignment explanation
Indices: 27466427--27466479 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27466417 GTTGGCTTAG
27466427 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
27466453 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27466479 G
1 G
27466480 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27467374 original size:158 final size:157
Alignment explanation
Indices: 27467076--27467690 Score: 482
Period size: 159 Copynumber: 3.9 Consensus size: 157
27467066 CCACCCGTTC
* ** ** *
27467076 GATCCCCGGCTTGCGCATCCTGCCTCTTTGGTCGGCTGAGCGTCCGCACGCTCGTTTCATGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCATGGGTT
* * **** ** ** ** *
27467141 GACTTAGGCATAGGGAGTTCATCCCCAGTCTAAGATTGGATTGGATAGAGGGTTGCGATAGCAAG
66 GACTTAGGCATACGGAGTTCAT-TCCAGTCTAAG-CCCAACCGGACCGAGGGTTGCGGCAGCAGG
* * *
27467206 ATCTGTAGCACGCA-AGGGGGATCGGGCT
129 ATCGGCAGCACGCAGAGGGGGACCGGGCT
* * **
27467234 GATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACACCCATTTTGTGGGTT
1 GATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCATGGGTT
* * * * *
27467299 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGCAGTAGG
66 GACTTAGGCATACGGAGTTCATTCCA-GTCTAAG-CCCAACCGGACCGAGGGTTGCGGCAGCAGG
* *
27467364 ATCGGCAGCACGTAGAGAGGGACCGGG-T
129 ATCGGCAGCACGCAGAGGGGGACCGGGCT
* ** * * * ** * *
27467392 CGATCCCCGACTTATGCATTATGCCTCTTCGGTCGACTCG-GTGCCCGAACGCTCGTTTCATGGG
1 -GATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCT-GAGCACCCGCACGCTCATTTCATGGG
* ** ** * * **
27467456 TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAAGGTTGCAGCAATA
64 TTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCCCA-ACCGGACCGAGGGTTGCGGCAGCA
** * * *
27467521 GGATCGATAACACACAGGGGGGGACCGGGC-
127 GGATCGGCAGCACGCAGAGGGGGACCGGGCT
* * * * **
27467551 CAGTCCCTGGCTTGCACATTTTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTTGTGGGT
1 GA-TCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCATGGGT
* * * * *
27467616 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGTCCCAACCAGACCGAGGGTTGTGGTAGCAG
65 TGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG-CCCAACCGGACCGAGGGTTGCGGCAGCAG
*
27467681 GATTGGCAGC
128 GATCGGCAGC
27467691 GAGATCGACA
Statistics
Matches: 350, Mismatches: 96, Indels: 21
0.75 0.21 0.04
Matches are distributed among these distances:
157 3 0.01
158 120 0.34
159 221 0.63
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCTCATTTCATGGGTT
GACTTAGGCATACGGAGTTCATTCCAGTCTAAGCCCAACCGGACCGAGGGTTGCGGCAGCAGGAT
CGGCAGCACGCAGAGGGGGACCGGGCT
Found at i:27468200 original size:26 final size:26
Alignment explanation
Indices: 27468151--27468200 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
27468141 GTTGACTTAG
**
27468151 GCATACAGAGTTCATTCGGTGTCTGA
1 GCATACAGAGTTCATTCGCAGTCTGA
* *
27468177 GCATACGGAGTTCATTCTCAGTCT
1 GCATACAGAGTTCATTCGCAGTCT
27468201 AAGATCAGAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCGCAGTCTGA
Found at i:27468465 original size:170 final size:170
Alignment explanation
Indices: 27468246--27468571 Score: 465
Period size: 170 Copynumber: 1.9 Consensus size: 170
27468236 CCAGCAGCAG
* * * ** *
27468246 GATCGACAGCACATAGGGGGGATCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGACTGGC
1 GATCGACAGCACACAGGAGGGATCGGGCCGATCCCCAACTTACGCATTCTGCCTCTCCGACTGAC
** *
27468311 TGAGCGGCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTGCG-TGTCTAAGC
66 TGAGCACCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CGATGTCTAAGC
*
27468375 CCCAGCCAGACTAAGGGTTGTGGCAGCAGGATCGACAGCCA
130 CCCAGCCAGACCAAGGGTTGTGGCAGCAGGATCGACAGCCA
* * * *
27468416 GATCGACAGCACACAGGAGGGATCGGGCTGATCCCTAACTTACGCATTCTGCCTCTCCGGCTGAT
1 GATCGACAGCACACAGGAGGGATCGGGCCGATCCCCAACTTACGCATTCTGCCTCTCCGACTGAC
* *
27468481 TGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCGATGTCTAAGCC
66 TGAGCACCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAAGCC
* * *
27468546 CTAGCCTGACCGAGGGTTGTGGCAGC
131 CCAGCCAGACCAAGGGTTGTGGCAGC
27468572 GGCACCGGTA
Statistics
Matches: 136, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
169 2 0.01
170 134 0.99
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (170 bp):
GATCGACAGCACACAGGAGGGATCGGGCCGATCCCCAACTTACGCATTCTGCCTCTCCGACTGAC
TGAGCACCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCGATGTCTAAGCC
CCAGCCAGACCAAGGGTTGTGGCAGCAGGATCGACAGCCA
Found at i:27468862 original size:26 final size:26
Alignment explanation
Indices: 27468832--27468884 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27468822 GTTAGCTTAG
* *
27468832 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAACTTCATCCCCAGTCTAA
*
27468858 GCATACGAACTTCATTCCCAGTCTAA
1 GCATACGAACTTCATCCCCAGTCTAA
27468884 G
1 G
27468885 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAACTTCATCCCCAGTCTAA
Found at i:27469159 original size:157 final size:158
Alignment explanation
Indices: 27468916--27469199 Score: 399
Period size: 157 Copynumber: 1.8 Consensus size: 158
27468906 CGATAGCAGC
* * *
27468916 ATCGACAGCACGCAGGGGGGACCGTGCTGATCCCCAGCTTGTGCATTCTACCTCTCCGGCCGACT
1 ATCGACAGCACGCAGGGGGGACCGGGCTGAGCCCCAGCTTGCGCATTCTACCTCTCCGGCCGACT
* * *
27468981 GAGTGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCTAAGATC
66 GAGAGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAATCTAAGATC
27469046 GGACCGGACTGAGGGTTGCAGCAATAGG
131 GGACCGGACTGAGGGTTGCAGCAATAGG
* * * * *
27469074 ATCGATAGCACGTAGGGGGGACTGGGCTG-GCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGACT
1 ATCGACAGCACGCAGGGGGGACCGGGCTGAGCCCCAGCTTGCGCATTCTACCTCTCCGGCCGACT
*** * ** *
27469138 GAGAGCTGGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAG
66 GAGAGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAATCTAAG
27469200 CGTACGGACT
Statistics
Matches: 108, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
157 83 0.77
158 25 0.23
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
ATCGACAGCACGCAGGGGGGACCGGGCTGAGCCCCAGCTTGCGCATTCTACCTCTCCGGCCGACT
GAGAGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAATCTAAGATC
GGACCGGACTGAGGGTTGCAGCAATAGG
Found at i:27469206 original size:26 final size:26
Alignment explanation
Indices: 27469176--27469225 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
27469166 GGCTTAGGCA
*
27469176 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGGACTTCATCCCCAGTCTAAGCG
* *
27469202 TACGGACTTCATTCCTAGTCTAAG
1 TACGGACTTCATCCCCAGTCTAAG
27469226 ATCAGATTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGACTTCATCCCCAGTCTAAGCG
Found at i:27469312 original size:341 final size:341
Alignment explanation
Indices: 27468581--27469542 Score: 1071
Period size: 341 Copynumber: 2.8 Consensus size: 341
27468571 CGGCACCGGT
* * * ** * * *
27468581 AGCACGCAGAGTGGGACCGGGTCAATCCTCAGCTTGTGCATT-ATGCCTCTCCGGCCGGGTGAGT
1 AGCACGCAG-GAGGGACCGGGCCAATCCCCAGCTTACGAATTCA-ACCTCTCCGGCCGGCTGAGT
* *
27468645 GCCCGA-ATGCTCGTTTCATGGGTTGACTTAGGCATAGAAGTTCATTCCTAGTCTAAGATCAGAC
64 GCCC-ACATGCTCGTTTCATGGGTTGACTTAGGCATAGAAGTTCATTCCCAATCTAAGATCAGAC
* * * *
27468709 C-GACCCGAGGGTTGCAGCAACACGATCGACAGCAC-TAGCGTGGGACTGGG-TCGGTCCCCAGC
128 CGGA-CCGAGGGTTGCAGCAATAGGATCGACAGCACGTAGAGGGGGACTGGGCT-GG-CCCCAGC
* *
27468771 TTACGCATTCTGCCTCT-CGGTCGGCTGAGAGCTGGCACGCTCATTTCATGGGTTAGCTTAGGCA
190 TTGCGCATTCTGCCTCTCCGGTCGGCTGAGAGCTGGCACGCTCATTTCATGGGTTGGCTTAGGCA
27468835 TACGGAGTTCATCCCCAGTCTAAGCATACGAACTTCATTCCCAGTCTAAGATCAGATCGGATCGA
255 TACGGAGTTCATCCCCAGTCTAAGCATACGAACTTCATTCCCAGTCTAAGATCAGATCGGATCGA
27468900 GGGTTACGATAGCAGCATCGAC
320 GGGTTACGATAGCAGCATCGAC
* * ** ** * * *
27468922 AGCACGCAGGGGGGACCGTGCTGATCCCCAGCTTGTGCATTCTACCTCTCCGGCCGACTGAGTGC
1 AGCACGCAGGAGGGACCGGGCCAATCCCCAGCTTACGAATTCAACCTCTCCGGCCGGCTGAGTGC
* * *
27468987 CCACACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCTAAGATCGGACCG
66 CCACATGCTCGTTTCATGGGTTGACTTAGGCATA-GAAGTTCATTCCCAATCTAAGATCAGACCG
* *
27469052 GACTGAGGGTTGCAGCAATAGGATCGATAGCACGTAG-GGGGGACTGGGCTGGCCCCAGCTTGCG
130 GACCGAGGGTTGCAGCAATAGGATCGACAGCACGTAGAGGGGGACTGGGCTGGCCCCAGCTTGCG
*
27469116 CATTCTGCCTCTCCGGTCGACTGAGAGCTGGCACGCTCATTTCATGGGTTGGCTTAGGCATACGG
195 CATTCTGCCTCTCCGGTCGGCTGAGAGCTGGCACGCTCATTTCATGGGTTGGCTTAGGCATACGG
* * * *
27469181 AGTTCATCCCCAGTCTAAGCGTACGGACTTCATTCCTAGTCTAAGATCAGATTGGATCGAGGGTT
260 AGTTCATCCCCAGTCTAAGCATACGAACTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTT
* * * *
27469246 ATGGTAGCAGGATCGAT
325 ACGATAGCAGCATCGAC
* * * * *
27469263 AGCACGCAGGAGGGATCGGGCCAATCCTCGGCTTACGAATTCAACCTCTCCGACCGGCTGAGCGC
1 AGCACGCAGGAGGGACCGGGCCAATCCCCAGCTTACGAATTCAACCTCTCCGGCCGGCTGAGTGC
** * * * * * * ** *
27469328 CTGCATGCCCGTTTCGTGGGTTGGCTTAGGAATAGGGAGTTCATT-CCATTTCTAAGCCCCAG-T
66 CCACATGCTCGTTTCATGGGTTGACTTAGGCATA-GAAGTTCATTCCCA-ATCTAAG-ATCAGAC
** * * ** * ** *
27469391 CGGACCGAGGGTTGTGGCAATGGGACCGACAGCACGTAGAGGGGGACCAAGCCTATCCCCGGCTT
128 CGGACCGAGGGTTGCAGCAATAGGATCGACAGCACGTAGAGGGGGA-CTGGGCTGGCCCCAGCTT
* * * * * * * * *
27469456 GCACATTATGCCTCTCCGGCCGGCTTAGCGCCT-GAACGCTCGTTTCGTGGGTTGACTTAGGCAT
192 GCGCATTCTGCCTCTCCGGTCGGCTGAGAG-CTGGCACGCTCATTTCATGGGTTGGCTTAGGCAT
*
27469520 ACGGAGTTCATTCCCAGTCTAAG
256 ACGGAGTTCATCCCCAGTCTAAG
27469543 ATCGGACCGG
Statistics
Matches: 526, Mismatches: 83, Indels: 22
0.83 0.13 0.03
Matches are distributed among these distances:
339 1 0.00
340 102 0.19
341 322 0.61
342 14 0.03
343 85 0.16
344 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (341 bp):
AGCACGCAGGAGGGACCGGGCCAATCCCCAGCTTACGAATTCAACCTCTCCGGCCGGCTGAGTGC
CCACATGCTCGTTTCATGGGTTGACTTAGGCATAGAAGTTCATTCCCAATCTAAGATCAGACCGG
ACCGAGGGTTGCAGCAATAGGATCGACAGCACGTAGAGGGGGACTGGGCTGGCCCCAGCTTGCGC
ATTCTGCCTCTCCGGTCGGCTGAGAGCTGGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGA
GTTCATCCCCAGTCTAAGCATACGAACTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTA
CGATAGCAGCATCGAC
Found at i:27469580 original size:159 final size:157
Alignment explanation
Indices: 27469202--27469632 Score: 422
Period size: 159 Copynumber: 2.7 Consensus size: 157
27469192 AGTCTAAGCG
* * * * *
27469202 TACGGACTTCATTCCTAGTCTAAGATCAGATTGGA-TCGAGGGTTATGGTAGCAGGATCGATAGC
1 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACT-GAGGGTTGTGGTAGCAGGATCGACAGC
* * * * *
27469266 ACGCAGGAGGGATCGGGCCAATCCTCGGCTTACGA-ATTCA-ACCTCTCCGACCGGCTGAGCGCC
65 ACGCAGGGGGGA-CCGGCCAATCCCCGGCTTGC-ACATT-ATACCTCTCCGGCCGGCTGAGCGCC
* * *
27469329 TGCATGCCCGTTTCGTGGGTTGGCTTAGGAA
127 TGAACGCCCGTTTCGTGGGTTGACTTAGGAA
* * ** * * *** *
27469360 TAGGGAGTTCATT-CCATTTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAATGGGACCGACAG
1 TACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGTGGTAGCAGGATCGACAG
* * * * *
27469423 CACGTAGAGGGGGACCAAGCCTATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTTAGCGCC
64 CACGCAG-GGGGGACC-GGCCAATCCCCGGCTTGCACATTATACCTCTCCGGCCGGCTGAGCGCC
* *
27469488 TGAACGCTCGTTTCGTGGGTTGACTTAGGCA
127 TGAACGCCCGTTTCGTGGGTTGACTTAGGAA
* * *
27469519 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTAGTAGCAGGATCGACAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAGGATCGACAGCA
* * *
27469584 CGCAGGGGGGACCGGACCGATCCCCGGCTAGCACATTCTACCTCTCCGG
66 CGCAGGGGGGACCGG-CCAATCCCCGGCTTGCACATTATACCTCTCCGG
27469633 TCAGCCTTTC
Statistics
Matches: 214, Mismatches: 49, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
157 3 0.01
158 88 0.41
159 120 0.56
160 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGTAGCAGGATCGACAGCA
CGCAGGGGGGACCGGCCAATCCCCGGCTTGCACATTATACCTCTCCGGCCGGCTGAGCGCCTGAA
CGCCCGTTTCGTGGGTTGACTTAGGAA
Found at i:27471251 original size:158 final size:157
Alignment explanation
Indices: 27470745--27471286 Score: 577
Period size: 158 Copynumber: 3.4 Consensus size: 157
27470735 TCTTTGGTCA
* * * *
27470745 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAG
* * * *
27470810 ATCAGACCAGACTGAGGGTTATGGTAGCAGGATCGACAGCACGTAGGGGGGACCGGGTCGATCCC
66 ATCAGACCGGACTGAGGGTTATGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGAT-CC
* *
27470875 CGACTTACGCATTCTGCCTCTTCGATAG
130 CGACTTGCGCATTCTGCCTCTTCGATCG
* * * * *
27470903 ACTGAGGGCCCGCACGCTCGA-TTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCC-ATGTCTA
1 GCTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTA-GTCTA
** * * * * * * * * *
27470966 AGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGGCAACGCGCAGAGCGGGACCGAGCCGA
64 AG-ATCAGACCGGACTGAGGGTTATGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCGA
* * * *
27471030 TCCCTGGCTTGTGCATTATGCCTCTTCGACCG
127 TCCC-GACTTGCGCATTCTGCCTCTTCGATCG
* * ** * * * * *
27471062 GCTCAACGATCGCACGCTCGTTTCATGGGTTGACTTATGCATATAGAGTTCATTCCTAATCTAAG
1 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAG
* * * * * *
27471127 ATCAGATCGGACTGAGGGTTACGACAGAAGGTTCGACAGCACGCAGGGGGGATCGGGCCGATCCT
66 ATCAGACCGGACTGAGGGTTATGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCC-
*
27471192 CGACTTGCGCATTCTGCCTCTCCGATCG
130 CGACTTGCGCATTCTGCCTCTTCGATCG
*
27471220 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAG
1 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAG
27471285 AT
66 AT
27471287 TTCGAGCCAT
Statistics
Matches: 301, Mismatches: 74, Indels: 18
0.77 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 185 0.61
159 114 0.38
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAG
ATCAGACCGGACTGAGGGTTATGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCC
GACTTGCGCATTCTGCCTCTTCGATCG
Found at i:27472003 original size:26 final size:26
Alignment explanation
Indices: 27471966--27472018 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27471956 GTTGACTTAG
* *
27471966 GCATACGTAGTTCATCCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27471992 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27472018 G
1 G
27472019 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27472300 original size:159 final size:159
Alignment explanation
Indices: 27471992--27473000 Score: 695
Period size: 159 Copynumber: 6.4 Consensus size: 159
27471982 CCCTGTCTAA
* * * * * * * *
27471992 GCATACGGAGTTCATTCCCAGTCTAAGAT-CAGATCGGACCAAGGGTTGTGATAGTAGGATCGAT
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCCA-ACCGGATCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * *
27472056 AGCACGCAG-GGGGGACCGAGTCGATCCCTGGCTTGTGCATTCTGTCTCTCCGACCGGCTGAGTG
65 AGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGTG
* * * *
27472120 CCAGCAAAC-C-CGTTTCGTGGGTTGGCTTAG
130 CC--CATACGCTCATTTCATGGGTTGACTTAG
* * * ** *
27472150 GCATAAGGAGTTCATT-CTATGTCTAAGCTCCAACCGGATCGAGGGTTGTGGTAGTGGGACCTG-
1 GCATAAGGAGTTCATTCCCA-GTCTAAGATCCAACCGGATCGAGGGTTGCGGTAGCAGGATC-GA
* * * ** * *
27472213 CAGCACGCAGAGGGGGATCGGGCCGGTCCTTGGCTTACGCATTATGCCTCTCCGATCGGCTTAGT
64 CAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGT
27472278 GCCCATACGCTCATTTCATGGGTTGACTTAG
129 GCCCATACGCTCATTTCATGGGTTGACTTAG
* * **
27472309 GCATATGGAGTTCATTCCTAGTCTAAGAT-CAGACCGGATCGAGGGTTGCGACAGCAGGATCGAC
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCCA-ACCGGATCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * * * * * * *
27472373 AGCACG-TGGGGGGGAACGAGTCAATCCCCGGCTTACGCATTCTACCTCTCCGA-CCGATGAGCG
65 AGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGTG
** * * * *
27472436 CCCGCACGCCCGA-TTCGTGGGTTGGCTAAG
130 CCCATACGCTC-ATTTCATGGGTTGACTTAG
* ** * * * * * * * *
27472466 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAATCAGACCGAGGGTTGTGGCAGCGGGACCGAT
1 GCATAAGGAGTTCATTCCCA-GTCTAAGATCCAACCGGATCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * *
27472530 AACACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAGTG
65 AGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGTG
** * * * *
27472595 ATCGTATGCTCGTTTCATGGGTTGACTTAT
130 CCCATACGCTCATTTCATGGGTTGACTTAG
* * * * *
27472625 GCATACA-GAGTTCATTCCCAATCTAAGAT-CAGATCGGA-CTGAGGGTTGCGATAGAAGGTTCG
1 GCATA-AGGAGTTCATTCCCAGTCTAAGATCCA-ACCGGATC-GAGGGTTGCGGTAGCAGGATCG
* * * * * * * *
27472687 ACGGCACGCAGAAGGGGACCGGGTTGATCCCCGGCTTGTGTATTATGCCTCCCCGACCGGCTCAA
63 ACAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAG
* * *
27472752 TGCCCACATGCTCGTTTCATGGGTTGACTTAG
128 TGCCCATACGCTCATTTCATGGGTTGACTTAG
** ** ** * * *
27472784 GCATGCGGAGTTCATTCCCAAACTAAGATCGGACCAGACCGAGGGTTACGGTAGCAGGATCGACA
1 GCATAAGGAGTTCATTCCCAGTCTAAGATCCAACCGGATCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * * * *
27472849 GCACGCAG-GGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCTGATTGGTTGAGTGC
66 GCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGTGC
* * * *
27472913 CC-TCACACTCATTTCGTGGTTTGGCTTAG
131 CCAT-ACGCTCATTTCATGGGTTGACTTAG
** * * *
27472942 GCATACA-GAGTTCATT-CCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGATAGCAGGA
1 GCATA-AGGAGTTCATTCCCA-GTCTAAGATCCAACCGGATCGAGGGTTGCGGTAGCAGGA
27473001 CCAGTACCAG
Statistics
Matches: 654, Mismatches: 172, Indels: 50
0.75 0.20 0.06
Matches are distributed among these distances:
156 2 0.00
157 88 0.13
158 239 0.37
159 318 0.49
160 7 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGATCCAACCGGATCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGATCGGCTCAGTGC
CCATACGCTCATTTCATGGGTTGACTTAG
Found at i:27472572 original size:316 final size:316
Alignment explanation
Indices: 27471992--27472697 Score: 885
Period size: 316 Copynumber: 2.2 Consensus size: 316
27471982 CCCTGTCTAA
* * * *
27471992 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGTGATAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-CGAGGGTTGCGATAGAAGGATCGACA
* * * ** ** * *
27472057 GCACGCAGGGGGGACCGAGTCGATCCCTGGCTTGTGCATTCTGTCTCTCCGACCGGCTGAGTGCC
65 GCACGCAGGGGGGAACGAGTCAATCCCCGGCTTACGCATTCTACCTCTCCGACCGGATGAGCGCC
* * * * *
27472122 AGCAAACCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCTATGTCTAAGCTCCAACCGG
130 AGCAAACCCGATTCGTGGGTTGGCTAAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCAG
* * * * * * * *
27472187 ATCGAGGGTTGTGGTAGTGGGACCTGCAGCACGCAGAGGGGGATCGGGCCGGTCCTTGGCTTACG
195 ACCGAGGGTTGTGGCAGCGGGACCTGCAACACGCAGAGGGGGACCGAGCCGATCCCTGGCTTACG
* *
27472252 CATTATGCCTCTCCGATCGGCTTAGTGCCCATACGCTCATTTCATGGGTTGACTTAG
260 CATTATGCCTCTCCGATCGGCTCAGTGACCATACGCTCATTTCATGGGTTGACTTAG
* * * * *
27472309 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-CGAGGGTTGCGATAGAAGGATCGACA
**
27472374 GCACGTGGGGGGGAACGAGTCAATCCCCGGCTTACGCATTCTACCTCTCCGACC-GATGAGCGCC
65 GCACGCAGGGGGGAACGAGTCAATCCCCGGCTTACGCATTCTACCTCTCCGACCGGATGAGCGCC
* ** * *
27472438 CGCACGCCCGATTCGTGGGTTGGCTAAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCAG
130 AGCAAACCCGATTCGTGGGTTGGCTAAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCAG
* *
27472503 ACCGAGGGTTGTGGCAGCGGGACC-GATAACACGCAGAGGGGGACCGAGCCGATCCCTGGCTTGC
195 ACCGAGGGTTGTGGCAGCGGGACCTG-CAACACGCAGAGGGGGACCGAGCCGATCCCTGGCTTAC
* * * * * * *
27472567 GCATTATGCCTCTTCGGTCGGCTCAGTGATCGTATGCTCGTTTCATGGGTTGACTTAT
259 GCATTATGCCTCTCCGATCGGCTCAGTGACCATACGCTCATTTCATGGGTTGACTTAG
* * * *
27472625 GCATACAGAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGGGTTGCGATAGAAGGTTCGACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAC-GAGGGTTGCGATAGAAGGATCGACA
27472690 GCACGCAG
65 GCACGCAG
27472698 AAGGGGACCG
Statistics
Matches: 327, Mismatches: 60, Indels: 5
0.83 0.15 0.01
Matches are distributed among these distances:
315 2 0.01
316 224 0.69
317 101 0.31
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.23
Consensus pattern (316 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACGAGGGTTGCGATAGAAGGATCGACAG
CACGCAGGGGGGAACGAGTCAATCCCCGGCTTACGCATTCTACCTCTCCGACCGGATGAGCGCCA
GCAAACCCGATTCGTGGGTTGGCTAAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCAGA
CCGAGGGTTGTGGCAGCGGGACCTGCAACACGCAGAGGGGGACCGAGCCGATCCCTGGCTTACGC
ATTATGCCTCTCCGATCGGCTCAGTGACCATACGCTCATTTCATGGGTTGACTTAG
Found at i:27473638 original size:157 final size:158
Alignment explanation
Indices: 27473187--27473687 Score: 507
Period size: 159 Copynumber: 3.2 Consensus size: 158
27473177 AGATCGAACA
* * * *
27473187 AGACCGAGGGTTGTGGCAGCAGGATCGACAACATGCAGGGGGGAT-TGAGCCAATCCCTGGCTTG
1 AGACCGAGGGTTGTGGCAGCAGGATCGACAGCAAGCAGGGGGG-TCAGAGTCAATCCCTGGCTTG
* * ** ** * *
27473251 CATATTCTGCCTC-TCTGGCCGATTGAGTGCCTGCACGCCCATTTCGTGGGTTGGCTTAGGCATA
65 CGTATTCTGCCTCTTC-GGTCGGCTGAGTGCCCACACGCTCATTTTGTGGGTTGGCTTAGGCATA
* * *
27473315 GC-GAGTTCATTCCATCTCTAAGCCCCAGTC
129 -CAGAGTTCATTCCATGTCTAAGCACCAGAC
* * * * * *
27473345 GGACCGAGGGTTGTGGCAGCGGGA-CTGGCAGCAAGCAGAAGGGGACCGAGTCAATCCCTGGCTT
1 AGACCGAGGGTTGTGGCAGCAGGATC-GACAGCAAGCAG-GGGGGTCAGAGTCAATCCCTGGCTT
* * * * *
27473409 GCGTATTATGCCTCTTCGGAT-GGCTCAGTGCCCACAAGCTCATTTTGTGGGTTGACTTATGCAT
64 GCGTATTCTGCCTCTTCGG-TCGGCTGAGTGCCCACACGCTCATTTTGTGGGTTGGCTTAGGCAT
*
27473473 ACAGAGTTCATTCC-TAGTCTAAG-ATCAGAC
128 ACAGAGTTCATTCCAT-GTCTAAGCACCAGAC
* * *
27473503 TAGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGTCAG-GTCGAT-CCTCGGCTT
1 -AGACCGAGGGTTGTGGCAGCAGGATCGACAGCAAGCAGGGGGGTCAGAGTCAATCCCT-GGCTT
* * * *
27473566 GCGCATTCTGCCTCTTCGGTCGGCTGAGCGCCCCCACGCTCATTTTGTGGTTTGGCTTAGGCATA
64 GCGTATTCTGCCTCTTCGGTCGGCTGAGTGCCCACACGCTCATTTTGTGGGTTGGCTTAGGCATA
* * *
27473631 CAAAGTTCATTCCATGTCTAAGCCCCAGCC
129 CAGAGTTCATTCCATGTCTAAGCACCAGAC
* *
27473661 GGACAGAGGGTTGTGGCAGCAGGATCG
1 AGACCGAGGGTTGTGGCAGCAGGATCG
27473688 GTACCAGGAT
Statistics
Matches: 279, Mismatches: 51, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
156 4 0.01
157 108 0.39
158 48 0.17
159 116 0.42
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
AGACCGAGGGTTGTGGCAGCAGGATCGACAGCAAGCAGGGGGGTCAGAGTCAATCCCTGGCTTGC
GTATTCTGCCTCTTCGGTCGGCTGAGTGCCCACACGCTCATTTTGTGGGTTGGCTTAGGCATACA
GAGTTCATTCCATGTCTAAGCACCAGAC
Found at i:27473865 original size:684 final size:683
Alignment explanation
Indices: 27472694--27474338 Score: 2325
Period size: 684 Copynumber: 2.4 Consensus size: 683
27472684 TCGACGGCAC
* * * * * * *
27472694 GCAGAAGGGGACCGGGTTGATCCCCGGCTTGTGTATTATGCCTC-CCCGACCGGCTCAATGCCCA
1 GCAGAAGGGGACCGAGTCGATCCCTGGCTTGTGTATTATGCCTCTTCGGA-TGGCTCAGTGCCCA
* ** * * * * ** *
27472758 CATGCTCGTTTCATGGGTTGACTTAGGCATGCGGAGTTCATTCCCAAACTAAGATCGGACCAGAC
65 CAAGCTCGTTTTGTGGGTTGACTTATGCATACAGAGTTCATTCCTAGTCTAAGATCGGACTAGA-
* * *
27472823 CGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCGCAT
129 CGAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGG-TCAGGTCGATCCTCGGCTTGCGCAT
* * * * *
27472888 TCTACCTC-TCTGATTGGTTGAGTGCCCTCACACTCATTTCGTGGTTTGGCTTAGGCATACAGAG
193 TCTACCTCTTC-GGTCGGTTGAGCGCCCCCACGCTCATTTCGTGGTTTGGCTTAGGCATACAGAG
*
27472952 TTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGATAGCAGGACCAGTACCAGGATCGA
257 TTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGACAGCAGGACCAGTACCAGGATCGA
*
27473017 CAGCACGTAGAGGGGGACCAGGCTGAGCTCTGGCTTGCACATTATGCCTCTCTAGCCAGCCTCTT
322 CAGCACGTAGAGGGGGACCAGGCTGAGCTCTGGCTTGCACATTATGCCTCTCTAGCCAACCTCTT
* *
27473082 CGATCGGTTGAGCACCCACACGCTCGTTTCATGAGTTGACTTAGGCATACGAAGTTCATCCTCAG
387 CGATCGGTTGAGCACCCACACACTCGTTTCATGAGCTGACTTAGGCATACGAAGTTCATCCTCAG
27473147 TCAAAGCATACAGAGTTCATTCCCAATATAAGATCGAACAAGACCGAGGGTTGTGGCAGCAGGAT
452 TCAAAGCATACAGAGTTCATTCCCAATATAAGATCGAACAAGACCGAGGGTTGTGGCAGCAGGAT
* * *
27473212 CGACAACATGCAGGGGGGATTGAGCCAATCCCTGGCTTGCATATTCTGCCTCTCTGGCC-GATTG
517 CGACAACACGCAAGGGGGATTGAGCCAATCCCTGGCTTGCATATTCTGCCTCTCCGGCCTG-TTG
* *
27473276 AGTGCCTGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCATCTCTAAGCCCC
581 AGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCATCTCTAAGCCCC
*
27473341 AGTCGGACCGAGGGTTGTGGCAGCGGGACTGGCAGCAA
646 AGTCGGACCGAGGGTTGTCGCAGCGGGACTGGCAGCAA
* *
27473379 GCAGAAGGGGACCGAGTCAATCCCTGGCTTGCGTATTATGCCTCTTCGGATGGCTCAGTGCCCAC
1 GCAGAAGGGGACCGAGTCGATCCCTGGCTTGTGTATTATGCCTCTTCGGATGGCTCAGTGCCCAC
* *
27473444 AAGCTCATTTTGTGGGTTGACTTATGCATACAGAGTTCATTCCTAGTCTAAGATCAGACTAGATC
66 AAGCTCGTTTTGTGGGTTGACTTATGCATACAGAGTTCATTCCTAGTCTAAGATCGGACTAGA-C
** *
27473509 GAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGTCAGGTCGATCCTCGGCTTGCGCATTC
130 GAGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGTCAGGTCGATCCTCGGCTTGCGCATTC
* * * *
27473574 TGCCTCTTCGGTCGGCTGAGCGCCCCCACGCTCATTTTGTGGTTTGGCTTAGGCATACAAAGTTC
195 TACCTCTTCGGTCGGTTGAGCGCCCCCACGCTCATTTCGTGGTTTGGCTTAGGCATACAGAGTTC
* * *
27473639 ATTCCATGTCTAAGCCCCAGCCGGA-CAGAGGGTTGTGGCAGCAGGATCGGTACCAGGATCGACA
260 ATTCCATGTCTAAGCCCCAGCCGGATC-GAGGGTTGTGACAGCAGGACCAGTACCAGGATCGACA
* * *
27473703 GCACGTAGAGGGGGACCAGGCTGATCTCTGGCTTGCGCATTATGCCTCT-TCGGCCAACCT-TTC
324 GCACGTAGAGGGGGACCAGGCTGAGCTCTGGCTTGCACATTATGCCTCTCT-AGCCAACCTCTT-
* * * * *
27473766 CGGT-GAGTTGAGCGCCCGCACACTCGTTTCGTGAGCTGACTTAGGCATACGGAGTTCATCCTCA
387 CGATCG-GTTGAGCACCCACACACTCGTTTCATGAGCTGACTTAGGCATACGAAGTTCATCCTCA
* * *
27473830 GTCAAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCAGGA
451 GTCAAAGCATACAGAGTTCATTCCCAATATAAGATCGAACAAGACCGAGGGTTGTGGCAGCAGGA
* ** *
27473895 TCGGCAACACGCAAGGGGGATTGAGCTGATCCTTGGCTTGCATATTCTGCCTCTCCGGCCTGTTG
516 TCGACAACACGCAAGGGGGATTGAGCCAATCCCTGGCTTGCATATTCTGCCTCTCCGGCCTGTTG
27473960 AGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCATCTCTAAGCCCC
581 AGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCATCTCTAAGCCCC
*
27474025 AGTCGGACCGAGGGTTGTCGCAGCGGGGCTGGCAGCAA
646 AGTCGGACCGAGGGTTGTCGCAGCGGGACTGGCAGCAA
* * * *
27474063 GCAGAAAGGGATCGAGCCGATCCCTGGCTTGTGTATTATGCCTCTTCGG-TCGGCTCAGTGCCCG
1 GCAGAAGGGGACCGAGTCGATCCCTGGCTTGTGTATTATGCCTCTTCGGAT-GGCTCAGTGCCCA
* * *
27474127 CACGCTCGTTTTGTGGGTTGACTTATGCATACAGAGTTCATTCCTAGTCTAAGATTGGACTGGAC
65 CAAGCTCGTTTTGTGGGTTGACTTATGCATACAGAGTTCATTCCTAGTCTAAGATCGGACTAGAC
* * * * * * * *
27474192 TGAAGGTTACGATAGCAAGATTGACAGCACGCAGGGGGGGCCAGGCCCATCCTTGGCTTGCGCAT
130 -GAGGGTTACGGTAGCAGGATCGACAGCACGCA-GGGGGGTCAGGTCGATCCTCGGCTTGCGCAT
* * * * * * * *
27474257 TCTACCTCTCCGGTCGGTTGAGCACCCGCATGCTCGTTTCGTGGGTTGGTTTAGGCATACGGAGT
193 TCTACCTCTTCGGTCGGTTGAGCGCCCCCACGCTCATTTCGTGGTTTGGCTTAGGCATACAGAGT
27474322 TCATTCCATGTCTAAGC
258 TCATTCCATGTCTAAGC
27474339 ATACGGAGTT
Statistics
Matches: 850, Mismatches: 100, Indels: 20
0.88 0.10 0.02
Matches are distributed among these distances:
683 7 0.01
684 601 0.71
685 239 0.28
686 3 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (683 bp):
GCAGAAGGGGACCGAGTCGATCCCTGGCTTGTGTATTATGCCTCTTCGGATGGCTCAGTGCCCAC
AAGCTCGTTTTGTGGGTTGACTTATGCATACAGAGTTCATTCCTAGTCTAAGATCGGACTAGACG
AGGGTTACGGTAGCAGGATCGACAGCACGCAGGGGGGTCAGGTCGATCCTCGGCTTGCGCATTCT
ACCTCTTCGGTCGGTTGAGCGCCCCCACGCTCATTTCGTGGTTTGGCTTAGGCATACAGAGTTCA
TTCCATGTCTAAGCCCCAGCCGGATCGAGGGTTGTGACAGCAGGACCAGTACCAGGATCGACAGC
ACGTAGAGGGGGACCAGGCTGAGCTCTGGCTTGCACATTATGCCTCTCTAGCCAACCTCTTCGAT
CGGTTGAGCACCCACACACTCGTTTCATGAGCTGACTTAGGCATACGAAGTTCATCCTCAGTCAA
AGCATACAGAGTTCATTCCCAATATAAGATCGAACAAGACCGAGGGTTGTGGCAGCAGGATCGAC
AACACGCAAGGGGGATTGAGCCAATCCCTGGCTTGCATATTCTGCCTCTCCGGCCTGTTGAGCGC
CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGCGAGTTCATTCCATCTCTAAGCCCCAGTCG
GACCGAGGGTTGTCGCAGCGGGACTGGCAGCAA
Found at i:27474340 original size:26 final size:26
Alignment explanation
Indices: 27474311--27474363 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27474301 GTTGGTTTAG
27474311 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27474337 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27474363 G
1 G
27474364 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27475081 original size:26 final size:26
Alignment explanation
Indices: 27475032--27475083 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27475022 GACTTAGGGC
**
27475032 CATAGGGAGTTCATTCCCCTTCTAAG
1 CATAGGGAGTTCATTCCCAGTCTAAG
*
27475058 CATATGGAGTTCATTCCCAGTCTAAG
1 CATAGGGAGTTCATTCCCAGTCTAAG
27475084 ATTAGAACAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (26 bp):
CATAGGGAGTTCATTCCCAGTCTAAG
Found at i:27476053 original size:158 final size:158
Alignment explanation
Indices: 27475623--27476736 Score: 668
Period size: 159 Copynumber: 6.9 Consensus size: 158
27475613 TAGCAGGACC
* ** * * * * *
27475623 AGCAGCAGGATCGACAACACGCAG-GGGGGACCGAACTGATCCTCGGCTTGCGCATTCTGCCTCT
1 AGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCT
* * *
27475687 CCAGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
66 CCAGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT
27475752 GTCTAAGCCCCAGCCGGACCGAGGGTTGT
131 GTCTAAG-CCCAGCCGGACCGAGGGTTGT
* * * * ** * * *
27475781 GGCAGCGGGACCGACAGCACGCAGAGGGAGATTGGGCCGATCCCTGGCTTACACATTATGCCTCT
1 AGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCT
* * ** *
27475846 TCAGTCGGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTATGCATACGGAGTTCATTCC-T
66 CCAGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT
** *
27475910 AGTCTAAGATTGCA-CCAGACCGAGGGTTGT
131 -GTCTAAG--CCCAGCCGGACCGAGGGTTGT
* * *** *
27475940 AGCAGCAGGATCGACAGCATGCA-AGGGGGATCGGGCCGATCTTTGACTTACGCATTCTGCCTCT
1 AGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCT
* * * * * * * * *
27476004 CCGGCCGGCTGAGCGTCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTGCAT
66 CCAGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT
27476069 GTCTAAGCCCTAGCCGGACCGAGGGTTGT
131 GTCTAAGCCC-AGCCGGACCGAGGGTTGT
* * ** * * *
27476098 GGCAGCGGGATCGGTAGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTGCGCATTATGCCTCT
1 AGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCT
* *
27476163 CC-GACCGGCTCAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCC
66 CCAG-CCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCC
* * * * ** *
27476227 A-GTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGAT
129 ATGTCTAAGC--CCAGCCG--GA--CCGAGGGT-TG-T
* * * ** ** **
27476263 TGGA-CTGGATCGAGGGTTGCGACAGTAGGATCGGCAGCACGCAGGGGGGACCAGGCCGACCCCC
1 AGCAGCAGGATCGACAG-CACG-CAG-AGG---GG--G-AC-C----GGG-CC-GATC--C--CC
* * * * * ** ** * * ** *
27476327 GGCTTGCGCATTCTGCCTCTCCGGCTGGCAGAAAGCCCGCACGCCCATTTTGTGGGTTGGCTTAG
46 GACTTACGCATTATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
27476392 GCATAGGGAGTTCATTCCATGTCTAAGCCCCATCTGGACCGAGGGTTGT
111 GCATACGGAGTTCATTCCATGTCTAAG-CCCAGCCGGACCGAGGGTTGT
* * * * * ** * * * *
27476441 GGCAGCAGGACCGGCAGCACACAAAGGGGGATTGGGCTGATCTCCGGCTTGCGCATTATGCCTCT
1 AGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCT
* * * * * *
27476506 TCGGCCGGCTCAGCGCCCGCACGCTCATTCCATGGGTTGACTTAGGTATATGGAGTTCATTCCCA
66 CCAGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCA
** * *
27476571 -GTCTAAGATCAGACCAGACCGAGAGTTGT
130 TGTCTAAGCCCAG-CCGGACCGAGGGTTGT
* * ** * * * *
27476600 GGCAGCAAGATCGACAGCACATAG-GGGGGACCGGGCTGAT-CCCAAGCTTGCGCATTCTGCCTC
1 AGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGA-CTTACGCATTATGCCTC
* * * * * * * * * *
27476663 T-CTGACCGACTGAGCGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGACTTTATTCC
65 TCCAG-CCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
27476727 ATGTCTAAGC
129 ATGTCTAAGC
27476737 ATACAGAGTT
Statistics
Matches: 728, Mismatches: 181, Indels: 94
0.73 0.18 0.09
Matches are distributed among these distances:
156 1 0.00
157 8 0.01
158 231 0.32
159 326 0.45
160 9 0.01
161 2 0.00
163 7 0.01
164 10 0.01
165 8 0.01
166 3 0.00
167 3 0.00
170 3 0.00
171 1 0.00
172 1 0.00
173 4 0.01
174 1 0.00
176 3 0.00
177 2 0.00
178 6 0.01
179 9 0.01
180 7 0.01
182 2 0.00
183 5 0.01
184 74 0.10
185 2 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
AGCAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCT
CCAGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT
GTCTAAGCCCAGCCGGACCGAGGGTTGT
Found at i:27476157 original size:317 final size:317
Alignment explanation
Indices: 27475623--27476736 Score: 1115
Period size: 317 Copynumber: 3.4 Consensus size: 317
27475613 TAGCAGGACC
* * ** * * *
27475623 AGCAGCAGGATCGACAACACGCAGGGGGGACCGAACTGATCCTCGGCTTGCGCATTCTGCCTCTC
1 AGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTC
* * * *
27475688 CAGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
66 CGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * *
27475753 TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGAGATTGGGC
131 TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGA-TAGGC
* * * * **
27475818 CGATCCCTGGCTTACACATTATGCCTCTTCAGTCGGCTCAGCGCCCGCACGCTCGTTTTGTGGGT
195 CGATCCCCGGCTTGCGCATTATGCCTCTTCAGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGT
* *
27475883 TGACTTATGCATACGGAGTTCATTCCTAGTCTAAGAT-TGCACCAGACCGAGGGTTGT
260 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATATGCACCAGACCGAGGGTTGT
* * *** *
27475940 AGCAGCAGGATCGACAGCATGCAAGGGGGATCGGGCCGATCTTTGACTTACGCATTCTGCCTCTC
1 AGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTC
* * * *
27476005 CGGCCGGCTGAGCGTCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTGCATG
66 CGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * * * *
27476070 TCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCGGGATCGGTAGCACGCAGAGGGGGACCAGGT
131 TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGA-TAGGC
* * *
27476135 CGATCCCCGACTTGCGCATTATGCCTC-TCCGACCGGCTCAGCGCCTGCACGCTCGTTTCATGGG
195 CGATCCCCGGCTTGCGCATTATGCCTCTTCAG-CCGGCTCAGCGCCCGCACGCTCGTTTCATGGG
* *
27476199 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATT
259 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT----A-TGCA----C---C----A--
*
27476264 GGACTGGATCGAGGGTTG-
305 -GAC-CGA--G--GGTTGT
* * * * * * *
27476282 CGACAGTAGGATCGGCAGCACGCAGGGGGGACCAGGCCGACCCCCGGCTTGCGCATTCTGCCTCT
1 AG-CAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCT
* * ** * * *
27476347 CCGGCTGGCAGAAAGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
65 CCGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* * * * * *
27476412 GTCTAAGCCCCATCTGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACACAAAGGGGGATTGGG
130 GTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGA-TAGG
* * * * *
27476477 CTGATCTCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTCCATGGG
194 CCGATCCCCGGCTTGCGCATTATGCCTCTTCAGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGG
* * *
27476542 TTGACTTAGGTATATGGAGTTCATTCCCAGTCTAAGATCA-G-ACCAGACCGAGAGTTGT
259 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-ATGCACCAGACCGAGGGTTGT
* * ** * * *
27476600 GGCAGCAAGATCGACAGCACATAGGGGGGACCGGGCTGAT-CCCAAGCTTGCGCATTCTGCCTCT
1 AGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGA-CTTGCGCATTCTGCCTCT
* * * * * * * * *
27476664 CTGACCGACTGAGCGCCTGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGACTTTATTCCAT
65 CCGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
27476729 GTCTAAGC
130 GTCTAAGC
27476737 ATACAGAGTT
Statistics
Matches: 649, Mismatches: 117, Indels: 62
0.78 0.14 0.07
Matches are distributed among these distances:
316 6 0.01
317 360 0.55
318 3 0.00
319 1 0.00
321 2 0.00
322 3 0.00
324 3 0.00
325 1 0.00
328 1 0.00
329 1 0.00
331 1 0.00
332 1 0.00
335 1 0.00
336 1 0.00
338 3 0.00
339 3 0.00
341 1 0.00
342 3 0.00
343 251 0.39
344 3 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (317 bp):
AGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTC
CGGCCGGCTGAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGATAGGCC
GATCCCCGGCTTGCGCATTATGCCTCTTCAGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATATGCACCAGACCGAGGGTTGT
Found at i:27476238 original size:26 final size:26
Alignment explanation
Indices: 27476208--27476260 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27476198 GTTGACTTAG
*
27476208 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
27476234 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27476260 G
1 G
27476261 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27476450 original size:501 final size:501
Alignment explanation
Indices: 27475860--27476764 Score: 1169
Period size: 501 Copynumber: 1.8 Consensus size: 501
27475850 TCGGCTCAGC
* * * ***
27475860 GCCCGCACGCTCGTTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAGATTGCAC
1 GCCCGCACGCCCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCCCAC
* ** **
27475925 CAGACCGAGGGTTGTAGCAGCAGGATCGACAGCATGC-AAGGGGGATCGGGCCGATCTTTGACTT
66 CAGACCGAGGGTTGTAGCAGCAGGACCGACAGCACACAAAGGGGGATCGGGCCGATCTCCGACTT
* * * * * * *
27475989 ACGCATTCTGCCTCTCCGGCCGGCTGAGCGTCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATA
131 ACGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCCCATTCCATGGGTTGACTTAGGCATA
* * * * ** **
27476054 GGGAGTTAATT-GCATGTCTAAGCCCTAG-CCGGACCGAGGGTTGTGGCAGCGGGATCGGTAGCA
196 GGGAGTTAATTCCCA-GTCTAAGACC-AGACCAGACCGAGAGTTGTGGCAGCAAGATCGACAGCA
* * * *
27476117 CGCAGAGGGGGACCAGG-TCGATCCC-CGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCC
259 CACAG-GGGGGACCGGGCT-GATCCCAAG-CTTGCGCATTATGCCTCTCCGACCGACTCAGCGCC
* *
27476180 TGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACAGAG
321 TGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGACTTCAT-CCCATGTCTAAGCATACAGAG
27476244 TTCATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTGCGACAGTAGGATCGGCAGCACGCAGGG
385 TTCATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTGCGACAGTAGGATCGGCAGCACGCAGGG
27476309 GGGACCAGGCCGACCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCAGAAA
450 GGGACCAGGCCGACCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCAGAAA
* *
27476361 GCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC-ATGTCTAAG-CCCCA
1 GCCCGCACGCCCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTA-GTCTAAGACCCCA
** * * * * *
27476424 TCTGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACACAAAGGGGGATTGGGCTGATCTCCGGC
65 -CCAGACCGAGGGTTGTAGCAGCAGGACCGACAGCACACAAAGGGGGATCGGGCCGATCTCCGAC
* * * *
27476489 TTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTCCATGGGTTGACTTAGGTA
129 TTACGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCCCATTCCATGGGTTGACTTAGGCA
* * *
27476554 TATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGTTGTGGCAGCAAGATCGACAGCA
194 TAGGGAGTTAATTCCCAGTCTAAGACCAGACCAGACCGAGAGTTGTGGCAGCAAGATCGACAGCA
* * * * *
27476619 CATAGGGGGGACCGGGCTGATCCCAAGCTTGCGCATTCTGCCTCTCTGACCGACTGAGCGCCTGT
259 CACAGGGGGGACCGGGCTGATCCCAAGCTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCTGC
* * * *
27476684 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGACTTTATTCCATGTCTAAGCATACAGAGTTCA
324 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGACTTCATCCCATGTCTAAGCATACAGAGTTCA
27476749 TTCCCAGTCTAAGATT
389 TTCCCAGTCTAAGATT
27476765 TTGAGCCACG
Statistics
Matches: 339, Mismatches: 57, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
500 6 0.02
501 204 0.60
502 127 0.37
503 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (501 bp):
GCCCGCACGCCCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGACCCCAC
CAGACCGAGGGTTGTAGCAGCAGGACCGACAGCACACAAAGGGGGATCGGGCCGATCTCCGACTT
ACGCATTATGCCTCTCCGGCCGGCTCAGCGCCCGCACGCCCATTCCATGGGTTGACTTAGGCATA
GGGAGTTAATTCCCAGTCTAAGACCAGACCAGACCGAGAGTTGTGGCAGCAAGATCGACAGCACA
CAGGGGGGACCGGGCTGATCCCAAGCTTGCGCATTATGCCTCTCCGACCGACTCAGCGCCTGCAC
GCTCGTTTCATGGGTTGACTTAGGCATACAGACTTCATCCCATGTCTAAGCATACAGAGTTCATT
CCCAGTCTAAGATTGGACTGGATCGAGGGTTGCGACAGTAGGATCGGCAGCACGCAGGGGGGACC
AGGCCGACCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCAGAAA
Found at i:27476530 original size:343 final size:343
Alignment explanation
Indices: 27475891--27476577 Score: 901
Period size: 343 Copynumber: 2.0 Consensus size: 343
27475881 GTTGACTTAT
* * *
27475891 GCATACGGAGTTCATTCCTAGTCTAAGATTGCACCAGACCGAGGGTTGTAGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGCACCAGACCGAGGGTTGGAGCAGCAGGATCGACA
* * * * *** * ** *
27475956 GCATGCAAGGGGGATCGGGCCGATCTTTGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGTC
66 GCACGCAAGGGGGACCAGGCCGACCCCCGACTTACGCATTCTGCCTCTCCGGCCGGCAGAAAGCC
* * *
27476021 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTGCATGTCTAAGCCCTAGCCGG
131 CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGCCGG
* * * * *
27476086 ACCGAGGGTTGTGGCAGCGGGATCGGTAGCACGCAGAGGGGGACCAGGTCGATCCCCGACTTGCG
196 ACCGAGGGTTGTGGCAGCAGGACCGGCAGCACACAAAGGGGGACCAGGTCGATCCCCGACTTGCG
* * *
27476151 CATTATGCCTCTCCGACCGGCTCAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
261 CATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTCCATGGGTTGACTTAGGCATACGG
27476216 AGTTCATCCCCAGTCTAA
326 AGTTCATCCCCAGTCTAA
* ** * * *
27476234 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTGCGA-CAGTAGGATCGGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGCACCAGACCGAGGGTTG-GAGCAGCAGGATCGAC
* * * *
27476298 AGCACGCAGGGGGGACCAGGCCGACCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCAGAAAGC
65 AGCACGCAAGGGGGACCAGGCCGACCCCCGACTTACGCATTCTGCCTCTCCGGCCGGCAGAAAGC
* * * *
27476363 CCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCATCTG
130 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGCCG
** * * *
27476428 GACCGAGGGTTGTGGCAGCAGGACCGGCAGCACACAAAGGGGGA-TTGGGCTGATCTCCGGCTTG
195 GACCGAGGGTTGTGGCAGCAGGACCGGCAGCACACAAAGGGGGACCAGGTC-GATCCCCGACTTG
* * * *
27476492 CGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTCCATGGGTTGACTTAGGTATAT
259 CGCATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTCCATGGGTTGACTTAGGCATAC
*
27476557 GGAGTTCATTCCCAGTCTAA
324 GGAGTTCATCCCCAGTCTAA
27476577 G
1 G
27476578 ATCAGACCAG
Statistics
Matches: 293, Mismatches: 49, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
342 3 0.01
343 289 0.99
344 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (343 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATTGCACCAGACCGAGGGTTGGAGCAGCAGGATCGACA
GCACGCAAGGGGGACCAGGCCGACCCCCGACTTACGCATTCTGCCTCTCCGGCCGGCAGAAAGCC
CGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGCCGG
ACCGAGGGTTGTGGCAGCAGGACCGGCAGCACACAAAGGGGGACCAGGTCGATCCCCGACTTGCG
CATTATGCCTCTCCGACCGGCTCAGCGCCCGCACGCTCATTCCATGGGTTGACTTAGGCATACGG
AGTTCATCCCCAGTCTAA
Found at i:27476589 original size:660 final size:668
Alignment explanation
Indices: 27475359--27476736 Score: 1646
Period size: 660 Copynumber: 2.1 Consensus size: 668
27475349 CGCACGATCA
* * * * ** *
27475359 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-ATCTAAGATC-AGACCGGATCGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACAGACTTAATT-CCATGTCTAAGCCCTAG-CCGGACCGAGGG
* * * * *
27475422 TTGTGGTAGTAGGATCGATAGCACGCAACGGGGGACAGGGTCGATCCTCGGCTTGCGCATTCTAC
64 TTGTGGCAGCAGGATCGATAGCACGCAACGGGGGACAGGGTCGATCCCCGACTTGCGCATTATAC
* ** * * * * * *
27475487 CTCTCTGGTCGGTTGAGCGCCCGCACACTCATTTCGTGGAATGGCTTAGGCAAATGGAGTTCATT
129 CTCTCCGACCGGCTCAGCGCCCGCACACTCATTTCATGGAATGACTTAGGCAAACGGAGTTCATC
* *
27475552 CCATGTCTAAGCATGCAGAGTTCATTCCCATTCTAAGATCGGATCGGATCGAGGGTTGTTGTAGC
194 CCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGG-TGTTGTAGC
* * *
27475617 AGGACCAGCAGCAGGATCGACAACACGCAGGGGGGACCGAACTGATCCTCGGCTTGCGCATTCTG
258 A-G--CAGCAGCAGGATCGACAACACGCAGGGGGGACCGAACCGACCCCCGGCTTGCGCATTCTG
* ** * *
27475682 CCTCTCCAGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
320 CCTCTCCAGCCGGCAGAAAGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
* * *
27475747 TCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGAGA
385 TCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGAGA
* * **
27475812 TTGGGCCGATCCCTGGCTTACACATTATGCCTCTTCAGTCGGCTCAGCGCCCGCACGCTCGTTTT
450 TTGGGCCGATCCCTGGCTTACACATTATGCCTCTTCAGCCGGCTCAGCGCCCGCACGCTCATTCC
* * * * *
27475877 GTGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAGATTGCACCAGACCGAGGGTTGTAG
515 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGCACCAGACCGAGAGTTGTAG
* * ***
27475942 CAGCAGGATCGACAGCATGCA-A-GGGGGATCGGGCCGAT-CTTTGACTTACGCATTCTGCCTCT
580 CAGCAAGATCGACAGCA--CATAGGGGGGACCGGGCCGATCCCAAG-CTTACGCATTCTGCCTCT
* *
27476004 CCGGCCGGCTGAGCGTCC-GCACGCCCG
642 CCGACCGACTGAGCG-CCTGCACGCCCG
** * *
27476031 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTAATTGCATGTCTAAGCCCTAGCCGGACCGAGGGTT
1 TTTCGTGGGTTGGCTTAGGCATACAGACTTAATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTT
* * *
27476096 GTGGCAGCGGGATCGGTAGCACGCAGA-GGGGGACCA-GGTCGATCCCCGACTTGCGCATTATGC
66 GTGGCAGCAGGATCGATAGCACGCA-ACGGGGGA-CAGGGTCGATCCCCGACTTGCGCATTATAC
* * * ** *
27476159 CTCTCCGACCGGCTCAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATC
129 CTCTCCGACCGGCTCAGCGCCCGCACACTCATTTCATGGAATGACTTAGGCAAACGGAGTTCAT-
*
27476224 CCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGA-CTGGATCGA-GG-G-T-T-G
193 CCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATC-GGATCGAGGGTGTTGTAG
* * * *
27476282 C-G-A-CAGTAGGATCGGCAGCACGCAGGGGGGACC-AGGCCGACCCCCGGCTTGCGCATTCTGC
257 CAGCAGCAGCAGGATCGACAACACGCAGGGGGGACCGA-ACCGACCCCCGGCTTGCGCATTCTGC
* * ** *
27476343 CTCTCCGGCTGGCAGAAAGCCCGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATT
321 CTCTCCAGCCGGCAGAAAGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT
* * * *
27476408 CCATGTCTAAGCCCCATCTGGACCGAGGGTTGTGGCAGCAGGACCGGCAGCACACAAAGGGGGAT
386 CCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGAGAT
* * * *
27476473 TGGGCTGATCTCC-GGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCGCCCGCACGCTCATTCC
451 TGGGCCGATC-CCTGGCTTACACATTATGCCTCTTCAGCCGGCTCAGCGCCCGCACGCTCATTCC
* * *
27476537 ATGGGTTGACTTAGGTATATGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGAGTTGTG
515 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGCACCAGACCGAGAGTTGTA
* * *
27476601 GCAGCAAGATCGACAGCACATAGGGGGGACCGGGCTGATCCCAAGCTTGCGCATTCTGCCTCTCT
579 GCAGCAAGATCGACAGCACATAGGGGGGACCGGGCCGATCCCAAGCTTACGCATTCTGCCTCTCC
* *
27476666 GACCGACTGAGCGCCTGTACGCTCG
644 GACCGACTGAGCGCCTGCACGCCCG
*
27476691 TTTCGTGGGTTGGCTTAGGCATACAGACTTTATTCCATGTCTAAGC
1 TTTCGTGGGTTGGCTTAGGCATACAGACTTAATTCCATGTCTAAGC
27476737 ATACAGAGTT
Statistics
Matches: 601, Mismatches: 92, Indels: 38
0.82 0.13 0.05
Matches are distributed among these distances:
658 2 0.00
659 4 0.01
660 377 0.63
661 6 0.01
664 1 0.00
666 2 0.00
667 1 0.00
668 1 0.00
669 1 0.00
671 5 0.01
672 193 0.32
673 8 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (668 bp):
TTTCGTGGGTTGGCTTAGGCATACAGACTTAATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTT
GTGGCAGCAGGATCGATAGCACGCAACGGGGGACAGGGTCGATCCCCGACTTGCGCATTATACCT
CTCCGACCGGCTCAGCGCCCGCACACTCATTTCATGGAATGACTTAGGCAAACGGAGTTCATCCC
ATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTGTTGTAGCAGC
AGCAGCAGGATCGACAACACGCAGGGGGGACCGAACCGACCCCCGGCTTGCGCATTCTGCCTCTC
CAGCCGGCAGAAAGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
TCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAAAGGGAGATTGGGC
CGATCCCTGGCTTACACATTATGCCTCTTCAGCCGGCTCAGCGCCCGCACGCTCATTCCATGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGCACCAGACCGAGAGTTGTAGCAGCAA
GATCGACAGCACATAGGGGGGACCGGGCCGATCCCAAGCTTACGCATTCTGCCTCTCCGACCGAC
TGAGCGCCTGCACGCCCG
Found at i:27476751 original size:26 final size:26
Alignment explanation
Indices: 27476709--27476761 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27476699 GTTGGCTTAG
*
27476709 GCATACAGACTTTATT-CCATGTCTAA
1 GCATACAGACTTCATTCCCA-GTCTAA
*
27476735 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
27476761 G
1 G
27476762 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:27477419 original size:26 final size:26
Alignment explanation
Indices: 27477389--27477466 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
27477379 GTTGACTTAG
27477389 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
27477415 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
27477441 GCATACAGAGTTCATTCCCA-TCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27477466 G
1 G
27477467 ATTGGACCGG
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
25 6 0.12
26 43 0.88
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27477631 original size:26 final size:26
Alignment explanation
Indices: 27477595--27477650 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
27477585 TGGGTTGGCT
27477595 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
27477621 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
27477647 TAAG
1 TAAG
27477651 ATCAGACCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:27477729 original size:30 final size:30
Alignment explanation
Indices: 27477693--27477756 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
27477683 CCAGCAGTAG
27477693 GATCGACAGCACACAGTGAGGGATCGGGCC
1 GATCGACAGCACACAGTGAGGGATCGGGCC
*
27477723 GATCGACAGCACGCAGTGAGGGATCGGGCC
1 GATCGACAGCACACAGTGAGGGATCGGGCC
27477753 GATC
1 GATC
27477757 CCCAACTTGC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.25, C:0.27, G:0.38, T:0.11
Consensus pattern (30 bp):
GATCGACAGCACACAGTGAGGGATCGGGCC
Found at i:27478025 original size:26 final size:26
Alignment explanation
Indices: 27477996--27478048 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27477986 GTGGACTTAG
27477996 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** * *
27478022 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27478048 G
1 G
27478049 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27478353 original size:159 final size:159
Alignment explanation
Indices: 27478116--27478590 Score: 408
Period size: 159 Copynumber: 3.0 Consensus size: 159
27478106 CCTATCCTTG
* * * * * * * * * **
27478116 GCTTGCGCATTCTACCTCTCCGATCGGCTGAGCACCCGCATGCCTGTTCCATGGGTTGGCTTAGG
1 GCTTACGCATTATGCCTCTCTGACCGGCTCAGCACCCGTATGCCTGTTTCATGGGTTGACCAAGG
* * *
27478181 GATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACTGAGGGTTGTGGTAGCGGGACCGACAG
66 CATACGGAGTTCATTCCATGTCTAAGCCCTAGCTAGACTGAGGGTTGTGGTAGCGGGACCGACAG
*
27478246 CACGCAGAGGGGGATC-GAGTCGATCCCCA
131 CACGCAGAGGGGGACCAG-GTCGATCCCCA
* **
27478275 GCTTACGCATTATGCCTCT-TAGACCGGCTCAGCACCCGTGA-G-CTCGTTTCATTGGTTGACTT
1 GCTTACGCATTATGCCTCTCT-GACCGGCTCAGCACCCGT-ATGCCT-GTTTCATGGGTTGACCA
* *** * * * * **** ** *
27478337 ATGCATACGGAGTTCATTCCCA-GTCTAA-TATTGGATCGAACCGAGGGTTGCAACAGTAGGATC
63 AGGCATACGGAGTTCATT-CCATGTCTAAGCCCTAGCTAG-ACTGAGGGTTGTGGTAGCGGGACC
27478400 GACAGCACGCAG-GGGGGACCAGGTCGATCCCCA
126 GACAGCACGCAGAGGGGGACCAGGTCGATCCCCA
* * * * ** *
27478433 GCTTACGCATTCTGCCTCTCTGGCTGGCTGAGTGCCCGTATGCCTGTTTCATGGGTTGGCCAAGG
1 GCTTACGCATTATGCCTCTCTGACCGGCTCAGCACCCGTATGCCTGTTTCATGGGTTGACCAAGG
* * * * *
27478498 CATAGGGAGTTCATTGCATGTCTAAGCCCTAGCCAGA-TCGAGGGTTGTGGTAGCGGGACTGGCA
66 CATACGGAGTTCATTCCATGTCTAAGCCCTAGCTAGACT-GAGGGTTGTGGTAGCGGGACCGACA
* *
27478562 GCACGCAGAAGGGGACCAGGCCGATCCCC
130 GCACGCAGAGGGGGACCAGGTCGATCCCC
27478591 GACGGTATTG
Statistics
Matches: 242, Mismatches: 61, Indels: 26
0.74 0.19 0.08
Matches are distributed among these distances:
157 3 0.01
158 115 0.48
159 120 0.50
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCTTACGCATTATGCCTCTCTGACCGGCTCAGCACCCGTATGCCTGTTTCATGGGTTGACCAAGG
CATACGGAGTTCATTCCATGTCTAAGCCCTAGCTAGACTGAGGGTTGTGGTAGCGGGACCGACAG
CACGCAGAGGGGGACCAGGTCGATCCCCA
Found at i:27478542 original size:158 final size:157
Alignment explanation
Indices: 27478072--27478544 Score: 397
Period size: 158 Copynumber: 3.0 Consensus size: 157
27478062 GAGGTTTACG
* * * *** * *
27478072 ACAGCAGGATCGACAGTAC-CTAGGGGGGACCAGGCCTATCCTTGGCTTGCGCATTCTACCTCTC
1 ACAGCAGGATCGACAGCACGC-AGGGGGGACCAGGTCGATCCCCAGCTTACGCATTCTGCCTCTC
* * * * *
27478136 -CGATCGGCTGAGCACCCGCATGCCTGTTCCATGGGTTGGCTTAGGGATAGGGAGTTCATTCCAT
65 TGGCT-GGCTGAGCACCCGTATGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
* * **
27478200 GTCTAAGCCCCAGCTAGACTGAGGGTTGTG
129 GTCTAAGCCCTAGCCAGAC-GAGGGTTGCA
** * * * *
27478230 GTAGCGGGACCGACAGCACGCAGAGGGGGATC-GAGTCGATCCCCAGCTTACGCATTATGCCTCT
1 ACAGCAGGATCGACAGCACGCAG-GGGGGACCAG-GTCGATCCCCAGCTTACGCATTCTGCCTCT
* * * * * * *
27478294 -TAGACCGGCTCAGCACCCGTGA-G-CTCGTTTCATTGGTTGACTTATGCATACGGAGTTCATTC
64 CT-GGCTGGCTGAGCACCCGT-ATGCCT-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-
*** * *
27478356 CCA-GTCTAA-TATTGGATC-GAACCGAGGGTTGCA
125 CCATGTCTAAGCCCTAG-CCAG-A-CGAGGGTTGCA
*
27478389 ACAGTAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTACGCATTCTGCCTCTCT
1 ACAGCAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTACGCATTCTGCCTCTCT
** ** *
27478454 GGCTGGCTGAGTGCCCGTATGCCTGTTTCATGGGTTGGCCAAGGCATAGGGAGTTCATTGCATGT
66 GGCTGGCTGAGCACCCGTATGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
27478519 CTAAGCCCTAGCCAGATCGAGGGTTG
131 CTAAGCCCTAGCCAGA-CGAGGGTTG
27478545 TGGTAGCGGG
Statistics
Matches: 237, Mismatches: 60, Indels: 36
0.71 0.18 0.11
Matches are distributed among these distances:
157 3 0.01
158 117 0.49
159 112 0.47
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (157 bp):
ACAGCAGGATCGACAGCACGCAGGGGGGACCAGGTCGATCCCCAGCTTACGCATTCTGCCTCTCT
GGCTGGCTGAGCACCCGTATGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
CTAAGCCCTAGCCAGACGAGGGTTGCA
Found at i:27478564 original size:158 final size:158
Alignment explanation
Indices: 27478140--27478590 Score: 434
Period size: 158 Copynumber: 2.8 Consensus size: 158
27478130 CCTCTCCGAT
* * *
27478140 CGGCTGAGCACCCGCATGCCTGTTCCATGGGTTGGCTTAGGGATAGGGAGTTCATTCCATGTCTA
1 CGGCTGAGCACCCGTATGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * *
27478205 AGCCCCAGCTAGACTGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGATC-GAGTCGA
66 AGCCCTAGCCAGAC-GAGGGTTGTGGTAGCGGGACTGACAGCACGCAGAGGGGGACCAG-GTCGA
27478269 TCCCCAGCTTACGCATTATGCCTCTTAGAC
129 TCCCCAGCTTACGCATTATGCCTCTTAGAC
* * * * *
27478299 CGGCTCAGCACCCGTGA-G-CTCGTTTCATTGGTTGACTTATGCATACGGAGTTCATTCCCA-GT
1 CGGCTGAGCACCCGT-ATGCCT-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGT
*** * * **** **
27478361 CTAA-TATTGGATC-GAACCGAGGGTTGCAACAGTAGGA-TCGACAGCACGCAG-GGGGGACCAG
63 CTAAGCCCTAG-CCAG-A-CGAGGGTTGTGGTAGCGGGACT-GACAGCACGCAGAGGGGGACCAG
* *
27478422 GTCGATCCCCAGCTTACGCATTCTGCCTCTCT-GGC
124 GTCGATCCCCAGCTTACGCATTATGCCTCT-TAGAC
* ** ** *
27478457 TGGCTGAGTGCCCGTATGCCTGTTTCATGGGTTGGCCAAGGCATAGGGAGTTCATTGCATGTCTA
1 CGGCTGAGCACCCGTATGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * *
27478522 AGCCCTAGCCAGATCGAGGGTTGTGGTAGCGGGACTGGCAGCACGCAGAAGGGGACCAGGCCGAT
66 AGCCCTAGCCAGA-CGAGGGTTGTGGTAGCGGGACTGACAGCACGCAGAGGGGGACCAGGTCGAT
27478587 CCCC
130 CCCC
27478591 GACGGTATTG
Statistics
Matches: 225, Mismatches: 51, Indels: 32
0.73 0.17 0.10
Matches are distributed among these distances:
157 3 0.01
158 116 0.52
159 101 0.45
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.22
Consensus pattern (158 bp):
CGGCTGAGCACCCGTATGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
AGCCCTAGCCAGACGAGGGTTGTGGTAGCGGGACTGACAGCACGCAGAGGGGGACCAGGTCGATC
CCCAGCTTACGCATTATGCCTCTTAGAC
Found at i:27480531 original size:26 final size:26
Alignment explanation
Indices: 27480501--27480553 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27480491 GTTGACTTAG
*
27480501 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTGCATCCCCAGTCTAA
** *
27480527 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACAAAGTGCATCCCCAGTCTAA
27480553 G
1 G
27480554 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAAAGTGCATCCCCAGTCTAA
Found at i:27480828 original size:159 final size:158
Alignment explanation
Indices: 27480526--27481030 Score: 495
Period size: 159 Copynumber: 3.2 Consensus size: 158
27480516 CCCCAGTCTA
* ** * * ** *
27480526 AGCATACGGAGTGCATTCCCA-GTCTAAGATCGGACC-GAACCGAGGGTTACGACAGTAGGATCG
1 AGCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAG-ACCGAGGGTTACGGCACCAGGACCG
* * ** * *
27480589 GCAACACGCAG-GGGGGATCCAGTCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGAC-CGA
64 ACAACACGTAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGACTC-A
* * *
27480652 GCGCTCGCACGCCCGTTTCTTGGAG-TGGCTT
128 GCGCCCGCACGCTCGTTTCATGG-GTTGGCTT
* * ** * * *
27480683 AGCCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-TCAGACCGAGGGTTGTGGTAGCGGGACCG
1 AG-CATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAGACCGAGGGTTACGGCACCAGGACCG
* * * * * *
27480747 ACAACACGTAGAGGGGGATCGGGCTGATCCCCGACTTGTGCATTATGCCTTTTCGGCCGACTCAG
64 ACAACACGTAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGACTCAG
* *
27480812 CGCCCGTACGCTCGTTTCATGGGTTGACTT
129 CGCCCGCACGCTCGTTTCATGGGTTGGCTT
** **
27480842 ATGCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGGGTTACGGCACCAGGATTG
1 A-GCATACGGAGTTCATT-CCATGTCTAAGCCCAGACCAGACCGAGGGTTACGGCACCAGGACCG
* * *
27480906 ACAACACGTAGCGGGGGATCGGGCCGATCCTTGGCTTGCGCATTCTAG-CTCTTCGGCCGACTTA
64 ACAACACGTAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCT-GCCTCTTCGGCCGACTCA
*
27480970 GCGCCCGCACGTTCGTTTCATGGGTTGGCTT
128 GCGCCCGCACGCTCGTTTCATGGGTTGGCTT
*
27481001 GGGCATACGGAGTTCATTCCATGTCTAAGC
1 -AGCATACGGAGTTCATTCCATGTCTAAGC
27481031 ATACGGAATT
Statistics
Matches: 280, Mismatches: 55, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
157 5 0.02
158 55 0.20
159 214 0.76
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
AGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGACCGAGGGTTACGGCACCAGGACCGAC
AACACGTAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGGCCGACTCAGCG
CCCGCACGCTCGTTTCATGGGTTGGCTT
Found at i:27481053 original size:26 final size:26
Alignment explanation
Indices: 27481003--27481055 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27480993 GTTGGCTTGG
* *
27481003 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAATTCATTCCATATCTAA
27481029 GCATACGGAATTCATTCCCA-ATCTAA
1 GCATACGGAATTCATT-CCATATCTAA
27481055 G
1 G
27481056 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCATATCTAA
Found at i:27481105 original size:514 final size:509
Alignment explanation
Indices: 27480097--27481078 Score: 1146
Period size: 514 Copynumber: 1.9 Consensus size: 509
27480087 TACCACCCGT
* *
27480097 TCGATCCCCAGCTTGCGCATCCTGCCTCTTCGATCGACTGAGCGCCCGCACGCCCGTTTCGTGGG
1 TCGATCCCCAGCTTGCGCATCCTGCCTCTTCGACCGACCGAGCGCCCGCACGCCCGTTTCGTGGG
* * * * *
27480162 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAATCCCCAGTCGGACTGAGGGTTACAGTAGTG
66 TTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTACAGTAGCG
* * * * *
27480227 AGACCGACAGCACGTAGAAGGGGACCGGGCTGATCTCTGACTTCCTCATTCTGCCTTTTCGGCTG
131 AGACCGACAACACGTAGAAGGGGACCGGGCTGATCCCCGACTTCCTCATTATGCCTTTTCGGCCG
* * * * *
27480292 GCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
196 ACTCAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG
* ** * * *
27480357 CCCTAGCTGGACCGAGGGTTGTCGCAGCAGGACCGGTAGCAGGATCGATAGCACGTAGAGGCAAA
261 ACCTAGCCAGACCGAGGGTTGT--CAGCAGGA-C-G-ACCAGGATCGACAACACGTAGAGGCAAA
* * * *
27480422 CCAGGCTAATCCTCGGCTTACGCATTCTGCCTCTCTGACCGGCTGAACGCTCGTACGCTCATTTC
321 CCAGGCCAATCCTCGGCTTACGCATTCTGCCTCTCTGACCGACTGAACGCCCGCACGCTCATTTC
* *
27480487 ATGGGTTGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTGCATTCCCAGTCTA
386 ATGGGTTGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAATGCATTCCCAATCTA
27480552 AGATCGGACCGAACCGAGGGTTACGACAGTAGGATCGGCAACACGCAGGGGGGATCCAG
451 AGATCGGACCGAACCGAGGGTTACGACAGTAGGATCGGCAACACGCAGGGGGGATCCAG
* * * * *
27480611 TCGATCCTCGGCTTGCGCATTCTGCCTCTTCGACCGACCGAGCGCTCGCACGCCCGTTTCTTGGA
1 TCGATCCCCAGCTTGCGCATCCTGCCTCTTCGACCGACCGAGCGCCCGCACGCCCGTTTCGTGG-
* ***
27480676 G-TGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCAGACCGAGGGTTGTGGTAGC
65 GTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTACAGTAGC
* * * *
27480740 GGGACCGACAACACGTAGAGGGGGATCGGGCTGATCCCCGACTT-GTGCATTATGCCTTTTCGGC
130 GAGACCGACAACACGTAGAAGGGGACCGGGCTGATCCCCGACTTCCT-CATTATGCCTTTTCGGC
* *
27480804 CGACTCAGCGCCCGTACGCTCGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCT
194 CGACTCAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCT
* * * *** *
27480868 AAGATC-AGACCAGACCGAGGG-T-T-A-C-GG-C-ACCAGGATTGACAACACGTAGCGGGGGAT
258 AAGACCTAG-CCAGACCGAGGGTTGTCAGCAGGACGACCAGGATCGACAACACGTAGAGGCAAAC
* * * * * * * * *
27480925 CGGGCCGATCCTTGGCTTGCGCATTCTAG-CTCT-TCGGCCGACTTAGCGCCCGCACGTTCGTTT
322 CAGGCCAATCCTCGGCTTACGCATTCT-GCCTCTCT-GACCGACTGAACGCCCGCACGCTCATTT
* * ** * *
27480988 CATGGGTTGGCTTGGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAATTCATTCCCAATC
385 CATGGGTTGACTTAGGCATACAAAGTTCATCCCCA-GTCTAAGCATACGGAATGCATTCCCAATC
* *
27481052 TAAGATCGGACTGGACCGAGGGTTACG
449 TAAGATCGGACCGAACCGAGGGTTACG
27481079 GTAGCAAGAC
Statistics
Matches: 393, Mismatches: 68, Indels: 26
0.81 0.14 0.05
Matches are distributed among these distances:
501 4 0.01
502 143 0.36
503 1 0.00
505 1 0.00
507 2 0.01
508 1 0.00
509 1 0.00
512 1 0.00
513 4 0.01
514 231 0.59
515 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (509 bp):
TCGATCCCCAGCTTGCGCATCCTGCCTCTTCGACCGACCGAGCGCCCGCACGCCCGTTTCGTGGG
TTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTACAGTAGCG
AGACCGACAACACGTAGAAGGGGACCGGGCTGATCCCCGACTTCCTCATTATGCCTTTTCGGCCG
ACTCAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG
ACCTAGCCAGACCGAGGGTTGTCAGCAGGACGACCAGGATCGACAACACGTAGAGGCAAACCAGG
CCAATCCTCGGCTTACGCATTCTGCCTCTCTGACCGACTGAACGCCCGCACGCTCATTTCATGGG
TTGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAATGCATTCCCAATCTAAGATC
GGACCGAACCGAGGGTTACGACAGTAGGATCGGCAACACGCAGGGGGGATCCAG
Found at i:27482527 original size:26 final size:26
Alignment explanation
Indices: 27482491--27482542 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27482481 GTTGGCTTTG
27482491 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27482517 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27482543 TATCAGATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27482888 original size:26 final size:26
Alignment explanation
Indices: 27482858--27482910 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27482848 GTTGACTTAG
* *
27482858 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTATAA
*
27482884 GCATACGAAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATCCCCAGTATAA
27482910 G
1 G
27482911 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTATAA
Found at i:27484128 original size:26 final size:26
Alignment explanation
Indices: 27484099--27484149 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27484089 TGGCTTAGGG
27484099 ATACGGAATTCATT-CCATGTCTAAGC
1 ATACGGAATTCATTCCCA-GTCTAAGC
*
27484125 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAATTCATTCCCAGTCTAAG
27484150 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAATTCATTCCCAGTCTAAGC
Found at i:27484289 original size:184 final size:183
Alignment explanation
Indices: 27483940--27484308 Score: 447
Period size: 184 Copynumber: 2.0 Consensus size: 183
27483930 GTTGACTTAG
* * * * *
27483940 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGACAGCAGGATCAACA
* * * * *
27484005 ACACACAGGGGGATCGGGTCGGTCCCCAGCTTGCGTATTCTGCCTCTCTGACCAGCTAAGTGCCC
66 ACACACAGGGGGATCGGCTCGATCCCCAACTTGCGTATTCTGCCTCTCAGACCAGCTAAGCGCCC
* *
27484070 GCACGCTTGTTTCACAAGTTGGCTTAGGGATACGGAATTCATTCCATGTCTAA
131 ACACGCTTGTTTCACAAGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAA
* *
27484123 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACC-AGACCGAGGGTTGCGACAGCAGGATCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTACGACAGCAGGATCAAC
** * * * *
27484187 TGCACGCAGGGGGGATCAGGCT-GATCCCCAACTTGCGTATTCTGCCTCTCCAG-CCGGTTGAGC
65 AACACACA-GGGGGATC-GGCTCGATCCCCAACTTGCGTATTCTGCCTCT-CAGACCAGCTAAGC
* **** *
27484250 GCCCACTCGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
127 GCCCACACGCTTGTTTCACAAGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAA
27484307 GC
1 GC
27484309 CCCAGTCAGA
Statistics
Matches: 156, Mismatches: 26, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
182 1 0.01
183 60 0.38
184 90 0.58
185 5 0.03
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (183 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGACAGCAGGATCAACA
ACACACAGGGGGATCGGCTCGATCCCCAACTTGCGTATTCTGCCTCTCAGACCAGCTAAGCGCCC
ACACGCTTGTTTCACAAGTTGGCTTAGGCATACGGAATTCATTCCATGTCTAA
Found at i:27484488 original size:26 final size:26
Alignment explanation
Indices: 27484452--27484504 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27484442 GTTGACTTAG
*
27484452 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATAAGGAGTTCATCCCTAGTCTAA
*
27484478 GCATAAGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATCCCTAGTCTAA
27484504 G
1 G
27484505 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCTAGTCTAA
Found at i:27484738 original size:184 final size:183
Alignment explanation
Indices: 27484371--27484834 Score: 525
Period size: 184 Copynumber: 2.5 Consensus size: 183
27484361 CGCAGAGAGA
* * * * * * *
27484371 GACCAGGCTGATCCTCGGCTTACGGATTAAGCCTCTCTGACCGGCTGAGCAACCGCACGATCGTT
1 GACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCAGACCGGCTGAGCACCCGCACG-TCGTT
** * * * *
27484436 TTATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATAAGGAGTTCATTCCTAGTC
65 TCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCGAAGCATAAGGAGTTCATTCCCAGCC
* * * * * *
27484501 TAAGATCGGACCAGATCGAGGGTTGCAGCAGCAAGATCGGTAGCACGCAGGGGG
130 TAAGATCAGACCAGACCGAGGGTTACAGCAGCAAGATCGGCAACACACAGGGGG
* * * * *
27484555 GACTAGGTCGATCCCCGGCTTGCGTATTATGCCTCTTC-GGCCGGCTGAGCGCCCGCACGTTCGT
1 GACCAGGCCGATCCCCGGCTTGCGCATTATGCCTC-TCAGACCGGCTGAGCACCCGCACG-TCGT
*
27484619 TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCGAAGCATATGGAGTTCATTCCCAGC
64 TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCGAAGCATAAGGAGTTCATTCCCAGC
** * * * *
27484684 CTAAGATCAGACTGGACCGAGGGTTACGGCCGTAAGATTGGCAACACACAGGGGG
129 CTAAGATCAGACCAGACCGAGGGTTACAGCAGCAAGATCGGCAACACACAGGGGG
* * * ** *
27484739 GACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCAGATTGGCTGAGCACCCGCACGCCTGTT
1 GACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCAGACCGGCTGAGCACCCGCACGTC-GTT
* * *
27484804 TCGTGCGTTGGCTTAGGCATAGGGAGTTCAT
65 TCGTGGGTTGACTTAGGCATACGGAGTTCAT
27484835 TCCATGTCTA
Statistics
Matches: 233, Mismatches: 44, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
183 3 0.01
184 228 0.98
185 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (183 bp):
GACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTCAGACCGGCTGAGCACCCGCACGTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCGAAGCATAAGGAGTTCATTCCCAGCCT
AAGATCAGACCAGACCGAGGGTTACAGCAGCAAGATCGGCAACACACAGGGGG
Found at i:27484963 original size:159 final size:159
Alignment explanation
Indices: 27484737--27485095 Score: 407
Period size: 159 Copynumber: 2.3 Consensus size: 159
27484727 ACACACAGGG
* * * * * *
27484737 GGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCAGATTGGCTGAGCACCCGCACGCCTG
1 GGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCACCCGAACGCCTG
* ** ** * *
27484802 TTTCGTGCGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCGCTAG-TCGGATCGAGGG
66 TTTCATGCGTTAACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGAGC-AGATCGGACCGAGGG
* * *
27484865 TTGTGGCAGCGGGACCAGTAGCACGCAGAGA
129 TTGTGGCAACAGGACCAATAGCACGCAGAGA
* * * * * *
27484896 GGGATTGGGCCGATCCCCGGCTTGCTCATTATGCCTCTCCGGTCGGCTCAGCACCCGAATGCTTG
1 GGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCACCCGAACGCCTG
* *
27484961 TTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT
66 TTTCATGCGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAGCAGATCGGACCGAGGGTT
* * * *
27485026 GTGGTAACAGGATCAATAGTACGCAGGGA
131 GTGGCAACAGGACCAATAGCACGCAGAGA
* * *
27485055 GGGACTGGGCTGGTCCCCGACTTGCGCATTCTGCCTCTCCG
1 GGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCG
27485096 CCCAGTTGAG
Statistics
Matches: 164, Mismatches: 34, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
158 2 0.01
159 159 0.97
160 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
GGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCACCCGAACGCCTG
TTTCATGCGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAGCAGATCGGACCGAGGGTT
GTGGCAACAGGACCAATAGCACGCAGAGA
Found at i:27486446 original size:26 final size:26
Alignment explanation
Indices: 27486394--27486446 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27486384 GTTGACTTAG
* *
27486394 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTATAA
27486420 GCATACGGAGTTCATTCCC-AGTATAA
1 GCATACGGAGTTCA-TCCCTAGTATAA
27486446 G
1 G
27486447 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTATAA
Found at i:27486896 original size:26 final size:26
Alignment explanation
Indices: 27486874--27486925 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
27486864 TAGGCATATG
27486874 GAGTTCATTCCATATCTAAGCATACA
1 GAGTTCATTCCATATCTAAGCATACA
27486900 GAGTTCATTCCATATCTAA-CAT-CA
1 GAGTTCATTCCATATCTAAGCATACA
27486924 GA
1 GA
27486926 TCAAATCGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 4 0.15
25 3 0.12
26 19 0.73
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.31
Consensus pattern (26 bp):
GAGTTCATTCCATATCTAAGCATACA
Found at i:27487263 original size:26 final size:26
Alignment explanation
Indices: 27487233--27487285 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27487223 GTTGACTTAG
27487233 GCATACAGAGTTCA-TCCCAAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
27487259 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27487285 G
1 G
27487286 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27487775 original size:26 final size:26
Alignment explanation
Indices: 27487723--27487775 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27487713 GTTGGCTTGG
* *
27487723 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
27487749 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
27487775 G
1 G
27487776 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:27489535 original size:159 final size:155
Alignment explanation
Indices: 27489026--27489681 Score: 471
Period size: 159 Copynumber: 4.1 Consensus size: 155
27489016 TAAGCACATA
* * * **
27489026 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTACGGCAGCAGGATCGGTAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACGGTAGCAGGATCGACAGCACGCA
** * * * * ** * * *
27489091 GGGGGGACCAAGCCGATCCCCGGCTTGCGGATTCTGCCTCTCCGGCCACCTAAGTGCCTGTACGC
66 GGGGGGA-CGGGTCGAT-CCCTGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCCCG-ACAC
*
27489156 -CTATTTTGTGGGTTGGCTTAGGCATAGG
128 TC-ATTTTGTGGGTTGGCTTAGGCATACG
* * * * *
27489184 GAGTTCATT-CCATGTCTAAG-CCTAG-CCGGACCT-AGGGTTATGGTAGCAGGACCGACAGCAT
1 GAGTTCATTCCCA-GTCTAAGATC-AGACC-GAACTGAGGGTTACGGTAGCAGGATCGACAGCAC
** * * * *
27489245 GCAGAAAGGGACTGGGTCGATCCCCTGCTTACGCATTATGCCTCTCCGACCGGCTCAGCACCCAG
63 GCAG-GGGGGAC-GGGTCGAT-CCCTGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCCC-G
* * *
27489310 ACACTCGTTTCGTGGGTTGACTTAGGCATACG
124 ACACTCATTTTGTGGGTTGGCTTAGGCATACG
* * ** * * * *
27489342 GAGTTCATTCTCAGTCTAAGAT-TGAATTGGACTGAGGGTTGCGGTAACAGGATCGACAGCACGT
1 GAGTTCATTCCCAGTCTAAGATCAG-ACCGAACTGAGGGTTACGGTAGCAGGATCGACAGCACGC
* * * *
27489406 ATGGGGGGATCGGGTCGGTCCCTAACTTGCGCATTCTGCCTCTCCGTCCGGCTGAGCGCCCGCAC
65 A-GGGGGGA-CGGGTCGATCCCT-GCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCCCG-AC
27489471 ACTCATTTTGTGGGTTGGCTTAGGCATACG
126 ACTCATTTTGTGGGTTGGCTTAGGCATACG
*
27489501 GAGTTTATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACGATAGCAGGACCAGTAGCAGGAT
1 GAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGG-T----TA-C--G----GTAGCAGGAT
* * * * ** * *
27489566 CGACAGCATGCAGGGGGGACCAGG-CTGATCCTCGGCTTGCGCATTTTGCCTCTCCGGTCAGCTG
54 CGACAGCACGCAGGGGGGA-CGGGTC-GATCC-CTGCTTGCGCATTCTGCCTCTCCGACCGGCTA
** * *
27489630 AGCATCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATACG
116 AGCGCCCG-ACACTCATTTTGTGGGTTGGCTTAGGCATACG
27489671 GAGTTCATTCC
1 GAGTTCATTCC
27489682 ATGTCTAGGC
Statistics
Matches: 387, Mismatches: 80, Indels: 50
0.75 0.15 0.10
Matches are distributed among these distances:
157 34 0.09
158 110 0.28
159 130 0.34
160 4 0.01
164 1 0.00
165 1 0.00
167 1 0.00
169 1 0.00
170 85 0.22
171 20 0.05
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (155 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACGGTAGCAGGATCGACAGCACGCA
GGGGGGACGGGTCGATCCCTGCTTGCGCATTCTGCCTCTCCGACCGGCTAAGCGCCCGACACTCA
TTTTGTGGGTTGGCTTAGGCATACG
Found at i:27489710 original size:170 final size:171
Alignment explanation
Indices: 27489431--27489792 Score: 389
Period size: 170 Copynumber: 2.1 Consensus size: 171
27489421 CGGTCCCTAA
* * * *
27489431 CTTGCGCATTCTGCCTCTCC-GTCCGGCTGAGCGCCCGCACACTCATTTTGTGGGTTGGCTTAGG
1 CTTGCGCATTATGCCTCTCCGGTCCAGCTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGG
* * * *
27489495 CATACGGAGTTTATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTACGATAGCAGGACCAGTAG
66 CATACGGAGTTCATTCCCAGTCTAAGACCAGACCGAACCGAGGGTTACGACAGCAGGA-CAG--G
* * *
27489560 CA-GG-ATCGACAGCATGCAG-GGGGGACCAGG-CTGATCCTCGG
128 CAGGGAATCGACAGCACGCAGAGGGGGACC-GGACTGATCCCCAG
* * * *
27489601 CTTGCGCATTTTGCCTCTCCGGT-CAGCTGAGCATCCGTACACTCGTTTCGTGGGTTGGCTTAGG
1 CTTGCGCATTATGCCTCTCCGGTCCAGCTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGG
* * * * ** *
27489665 CATACGGAGTTCATT-CCATGTCTAGGCCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGACAGGC
66 CATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCGAACCGAGGGTTACGACAGCAGGACAGGC
*
27489728 AGTGGAATCGGCAGCACGCAGAGGGGGACCGGACTGATCCCCAG
129 AG-GGAATCGACAGCACGCAGAGGGGGACCGGACTGATCCCCAG
*
27489772 CTTGTGCATTATGCCTCTCCG
1 CTTGCGCATTATGCCTCTCCG
27489793 ATCGGCTTTG
Statistics
Matches: 160, Mismatches: 24, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
167 3 0.02
169 8 0.05
170 108 0.68
171 41 0.26
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (171 bp):
CTTGCGCATTATGCCTCTCCGGTCCAGCTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGACCAGACCGAACCGAGGGTTACGACAGCAGGACAGGCAG
GGAATCGACAGCACGCAGAGGGGGACCGGACTGATCCCCAG
Found at i:27489877 original size:26 final size:26
Alignment explanation
Indices: 27489848--27489900 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27489838 GTTGACTTAG
*
27489848 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
27489874 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27489900 G
1 G
27489901 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27490337 original size:147 final size:147
Alignment explanation
Indices: 27490096--27490364 Score: 353
Period size: 147 Copynumber: 1.8 Consensus size: 147
27490086 CAGGATCGAC
* * * * * * *
27490096 AGCACGTAGAGGGGGACCGCGTCGATCCCCGGCTTACGCATAATGCCTCTCCGTCTGGCTGAGCG
1 AGCACGTAGAGGGGGACCGCGCCAATCCCCGGCTTACGCATAATACCTCTCAGTCTAGATGAGCA
* *
27490161 CCCGAAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGAT
66 CCCGAAAGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCATGTCTAAGATCGGAT
27490225 TGGACCAAAGGTTACGAT
130 TGGACCAAAGGTTACGAT
* ** **
27490243 AGCACGTAGAGGGGGACCGGGCCAATCCCCGGCTTGTGCATTCTACCTCTGCAGTC-AGATGAGC
1 AGCACGTAGAGGGGGACCGCGCCAATCCCCGGCTTACGCATAATACCTCT-CAGTCTAGATGAGC
* * *
27490307 ACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
65 ACCCGAAAGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAG
27490365 CATACGGAGT
Statistics
Matches: 103, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
146 3 0.03
147 96 0.93
148 4 0.04
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (147 bp):
AGCACGTAGAGGGGGACCGCGCCAATCCCCGGCTTACGCATAATACCTCTCAGTCTAGATGAGCA
CCCGAAAGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGATCGGATT
GGACCAAAGGTTACGAT
Found at i:27490368 original size:26 final size:26
Alignment explanation
Indices: 27490338--27490390 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27490328 GTTGGCTTAG
27490338 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
27490364 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27490390 G
1 G
27490391 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27490859 original size:26 final size:26
Alignment explanation
Indices: 27490829--27490881 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27490819 GTTGACTTAG
27490829 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27490855 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27490881 G
1 G
27490882 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27491495 original size:159 final size:158
Alignment explanation
Indices: 27491301--27491681 Score: 407
Period size: 158 Copynumber: 2.4 Consensus size: 158
27491291 TCTGGCCAGA
* * * * *
27491301 TGAGCACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCC
1 TGAGCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* * *
27491366 CTAG-CC-AGA-TCAAGGGTTGTGGCA-TCGGGATCGACAGCACCCT-GAGGGGGACCGAG-CTG
66 C-AGACCGA-ACTCAA-GGTTGCGACAGT-AGGATCGACAGCA-CCTAG-GGGGGACCGAGTC-G
**
27491425 ATCCCCAGCTTGTGCATTATAACTCTCCCTCCGGC
124 ATCCCCAGCTTGTGCATTATAACTCTCCAGCCGGC
* * * *
27491460 TTAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGA
1 TGAGCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGC
* * * * *
27491524 TCAGATCGAACTGAAGGTTGCGACAGTAGGATCGACAGCACGTAGGGGGGACCGAGTCGATCCTC
65 CCAGACCGAACTCAAGGTTGCGACAGTAGGATCGACAGCACCTAGGGGGGACCGAGTCGATCCCC
* * * *
27491589 GGTTTGTGCATTCTACCTCTCCAGCCGGC
130 AGCTTGTGCATTATAACTCTCCAGCCGGC
* * *
27491618 TGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
1 TGAGCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
27491682 ATACAGAGTT
Statistics
Matches: 184, Mismatches: 30, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
157 3 0.02
158 97 0.53
159 76 0.41
160 8 0.04
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (158 bp):
TGAGCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CAGACCGAACTCAAGGTTGCGACAGTAGGATCGACAGCACCTAGGGGGGACCGAGTCGATCCCCA
GCTTGTGCATTATAACTCTCCAGCCGGC
Found at i:27491653 original size:158 final size:157
Alignment explanation
Indices: 27491180--27491680 Score: 451
Period size: 159 Copynumber: 3.2 Consensus size: 157
27491170 CCATGTCTAA
* * * * * * *
27491180 GCATAAGGAGTTCATTCCCA-GTCTAAGATCGGATCAGACTGAGGGTTACGATAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAGACTGAAGGTTGCGACAGTAGGATCGAC
* * * * * ** * ** * *
27491244 AGCATGCA-GGGGGACCGGGCCTATCCCCGACTTGCACATTCTGCCTCTCTGGCCAGATGAGCAC
65 AGCACGTAGGGGGGACCGAG-CGATCCCCGGCTTGTGCATTCTACCTCTCCAGCCGGCTGAGCAC
* *
27491308 CCGCATGCCCGTTTCATGGGTTGGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * * *
27491337 GCATAGGGAGTTTATTCCATGTCTAAGCCCTAG-CCAGA-TCAAGGGTTGTGGCA-TCGGGATCG
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGATCAGACTGAA-GGTTGCGACAGT-AGGATCG
* * * * ** *
27491399 ACAGCACCCT-GAGGGGGACCGAGCTGATCCCCAGCTTGTGCATTATAACTCTCCCTCCGGCTTA
63 ACAGCA-CGTAG-GGGGGACCGAGC-GATCCCCGGCTTGTGCATTCTACCTCTCCAGCCGGCTGA
* * *
27491463 GCGCCCGAACGCTCGTTTCATGGGTTGACTTAG
125 GCACCCGCACGCTCGTTTCATGGGTTGGCTTAG
27491496 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATC-GAACTGAAGGTTGCGACAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCAG-ACTGAAGGTTGCGACAGTAGGATCGA
* *
27491559 CAGCACGTAGGGGGGACCGAGTCGATCCTCGGTTTGTGCATTCTACCTCTCCAGCCGGCTGAGCA
64 CAGCACGTAGGGGGGACCGAG-CGATCCCCGGCTTGTGCATTCTACCTCTCCAGCCGGCTGAGCA
*
27491624 CCCGCACGCTCATTTCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
*
27491654 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
27491681 CATACAGAGT
Statistics
Matches: 267, Mismatches: 61, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
156 5 0.02
157 46 0.17
158 100 0.37
159 109 0.41
160 7 0.03
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCAGACTGAAGGTTGCGACAGTAGGATCGACA
GCACGTAGGGGGGACCGAGCGATCCCCGGCTTGTGCATTCTACCTCTCCAGCCGGCTGAGCACCC
GCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:27492185 original size:26 final size:26
Alignment explanation
Indices: 27492155--27492207 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27492145 GTTGACTTAG
27492155 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27492181 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27492207 G
1 G
27492208 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27492495 original size:159 final size:158
Alignment explanation
Indices: 27492220--27492525 Score: 420
Period size: 159 Copynumber: 1.9 Consensus size: 158
27492210 CGGACCGGAC
* * * * *
27492220 TGAGGGTTGTGGCAGCAGGATCGACAGTATGCAGGGGGGACCATGCCATTCCCCGGCTTGCGCAT
1 TGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCATTCCCCAGCTTACGCAT
* ** * *
27492285 TCTGCCTCTCTAGTTGGCTGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGT
66 TCTGCCTCTCCAGCCGGCTGAGCGCCCGCACACCTGTTGCATGGGTTGGCTTAGGCATAGGGA-T
*
27492350 TT-ATTCCATGTCTAAGCCCCAGCTGGAT
130 TTCATTCCATCTCTAAGCCCCAGCTGGAT
* *
27492378 TGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCAGGCCCATT-CTCAGCTTACGC
1 TGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGACCAGG-CCATTCCCCAGCTTACGC
* *
27492442 TTTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACA-CTCGTTGCATGGGTTGGCTTAGGCATATGG
64 ATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACACCT-GTTGCATGGGTTGGCTTAGGCATAGGG
27492506 ATTTCATTCCATCTCTAAGC
128 ATTTCATTCCATCTCTAAGC
27492526 ATACGGAGTT
Statistics
Matches: 129, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
158 36 0.28
159 88 0.68
160 5 0.04
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.25
Consensus pattern (158 bp):
TGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCAGGCCATTCCCCAGCTTACGCAT
TCTGCCTCTCCAGCCGGCTGAGCGCCCGCACACCTGTTGCATGGGTTGGCTTAGGCATAGGGATT
TCATTCCATCTCTAAGCCCCAGCTGGAT
Found at i:27493250 original size:26 final size:26
Alignment explanation
Indices: 27493220--27493272 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27493210 GTTGACTTAC
27493220 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27493246 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27493272 G
1 G
27493273 ATTGAACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27493611 original size:26 final size:26
Alignment explanation
Indices: 27493562--27493614 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27493552 GTTGGCTTAG
*
27493562 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
27493588 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
27493614 G
1 G
27493615 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:27494667 original size:159 final size:157
Alignment explanation
Indices: 27494284--27494668 Score: 357
Period size: 159 Copynumber: 2.4 Consensus size: 157
27494274 CCCAGTCTAA
** * * * *
27494284 GCATACGAAGTTCATTCTGAATCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGATA
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGACTGGATCGAGGGTTGTGGCAGCAGGACCG-CA
* * * *
27494349 GCACGCAGGGAGGACCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAACTGGTTGAGCGCT
65 GCACGCAGGGAGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAACCGGCTCAGCGCT
*
27494414 CGCACGCCCTTTGCATGGGTTGGCTTAG
130 CGCACGCCCTTTGCATGGGTTGACTTAG
* * * * ** * ** *
27494442 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCACTCGGACCGAGGGTTGTGGCAGTGGGACTGG
1 GCATACGAAGTTCATTCCCA-ATCTAAGATCAGACT-GGATCGAGGGTTGTGGCAGCAGGAC-CG
* * * ** * * **
27494505 CAGCAC-CTAGAGGGGGATCGGGTTGATCCCCAGCTTGTGCATTATGCCTCTTCGGCCGGCTCAG
63 CAGCACGC-AG-GGAGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAACCGGCTCAG
* *
27494569 CGC-CTGCATGCTCGTTT-CATGGGTTGACTTAG
126 CGCTC-GCACGC-CCTTTGCATGGGTTGACTTAG
*
27494601 GCATACGAAGTTCATTCCCAATCTAAGATCAGACTGGATCGAGGGTTGTGGTAGCAGGACCAGCA
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGACTGGATCGAGGGTTGTGGCAGCAGGACC-GCA
27494666 GCA
65 GCA
27494669 GGATCGACAG
Statistics
Matches: 174, Mismatches: 43, Indels: 19
0.74 0.18 0.08
Matches are distributed among these distances:
157 5 0.03
158 48 0.28
159 110 0.63
160 11 0.06
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGAAGTTCATTCCCAATCTAAGATCAGACTGGATCGAGGGTTGTGGCAGCAGGACCGCAG
CACGCAGGGAGGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAACCGGCTCAGCGCTC
GCACGCCCTTTGCATGGGTTGACTTAG
Found at i:27494796 original size:26 final size:26
Alignment explanation
Indices: 27494760--27494812 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27494750 TTTGACTTAG
*
27494760 GCATACGGAGTCCATCCCCAGTCTAA
1 GCATACAGAGTCCATCCCCAGTCTAA
* * *
27494786 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTCCATCCCCAGTCTAA
27494812 G
1 G
27494813 ATCGAATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTCCATCCCCAGTCTAA
Found at i:27495148 original size:159 final size:157
Alignment explanation
Indices: 27494786--27495970 Score: 486
Period size: 159 Copynumber: 7.4 Consensus size: 157
27494776 CCCAGTCTAA
** * *
27494786 GCATACAGAGTTCATTCCTAGTCTAAGATC-GAATTGGATCGAGGGTTGTGGCAGCAGGATCGGT
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAG-A-CCGACCGAGGGTTGTGGCAGCAGGACCGGT
* * * * ** * * **
27494850 AGCACGCAAGGGGGACCGTGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGGTCGGTTGAGTGC
64 AGCACGCAAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATACCTCTCCGACCGGCTCAACGC
* * * *
27494915 CTGCACGTTCGTTTCATTGGTTGGCTTAG
129 CCGCACGTTCATTTCATGGGTTGACTTAG
** ** * * *
27494944 GCATAGGGAGTTCATTCC-ATGTCTAAGCCCCA-ACCGAACCAAGGGTTCTGGCAGCGGGACCGG
1 GCATACAGAGTTCATTCCTA-GTCTAAG-ATCAGACCG-ACCGAGGGTTGTGGCAGCAGGACCGG
* ** * * *
27495007 TAGCATGTTGAGGGGGATCGGGCCAATCCTCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAAC
63 TAGCACG-CAAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATACCTCTCCGACCGGCTCAAC
* *
27495072 GCCCGCATGTTCATTTCGTGGGTTGACTTAG
127 GCCCGCACGTTCATTTCATGGGTTGACTTAG
* **
27495103 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACC-GACCGAGGGTTGTGGCAGCAGGACCGGTA
* * * ** * * * ** * *
27495168 GTACGCAAGGGGGGGCTGGGCCGGT--CC--CTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGC
65 GCACGCAA-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTATACCTCTCCGACCGGCTCAACGC
** * *
27495229 CCGCACGCCCATTTCGTGGGTTGGCTTAG
129 CCGCACGTTCATTTCATGGGTTGACTTAG
** * ** * ** * **
27495258 GCATAGGGAGTTCATTCC-ACATCTAAGCCCCAG-CAGGATTGAGGGTTGTGGCAGCGGGACCAA
1 GCATACAGAGTTCATTCCTA-GTCTAAG-ATCAGAC-CGACCGAGGGTTGTGGCAGCAGGACCGG
* * * ** * * * ** * **
27495321 CAACACGCAGAGGGGGGCCGGGGTAATCCCCAGCTTGCGCATTCTACCTCTCCGGCCGTTTGAGT
63 TAGCACGCA-AGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATACCTCTCCGACCGGCTCAAC
* * * *
27495386 GCCCACACGCTCGTTTCATGGGTTGGCTTAG
127 GCCCGCACGTTCATTTCATGGGTTGACTTAG
* * ** * ** *
27495417 GCATACGGAGTTCATTCC-ATTCTAAGCCCCAG-TCGAAATGAGGGTTGCGGCAGCAGGACTAGC
1 GCATACAGAGTTCATTCCTAGTCTAAG-ATCAGACCG-ACCGAGGGTTGTGGCAGCAGG---A-C
* * * * ** * **
27495480 AGCAGGAATGGCAGCACGCATGGGGGACCAGACCGATCCCCGGCTTGCATATTTTTTCTCTCC-A
60 --C-GG--T---AGCACGCAAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATACCTCTCCGA
* * * * * *
27495544 GCCAGCTGAGCACCCGCACAG-TCGTTTCATGGGTTGGCTTAG
117 -CCGGCTCAACGCCCGCAC-GTTCATTTCATGGGTTGACTTAG
* * ** *
27495586 GCATACAAAGTTCATTCC-ACATCTAAGCCCCAG-CCAGACCGAGGGTTCTGGCAGC-GG-CACG
1 GCATACAGAGTTCATTCCTA-GTCTAAG-ATCAGACC-GACCGAGGGTTGTGGCAGCAGGAC-CG
** * * * * * * *
27495647 ACAGCACGCAGAAGGGGACC-GACTTAATCCCTGGCTTGCGTATTATGCCTCTCCGGCCGGCTCA
62 GTAGCACGCA-AGGGGGACCGGGC-CAATCCCCGGCTTGCGCATTATACCTCTCCGACCGGCTCA
** * * * *
27495711 GTGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
125 ACGCCCGCACGTTCATTTCATGGGTTGACTTAG
* * * * **
27495744 GCATAC-GAAGTTCATTTCTAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACAG-AGTTCATTCCTAGTCTAAGATCAGA-CCGACCGAGGGTTGTGGCAGCAGGACCGGT
* * *** ** * * * * * * * * *
27495808 AGCACCCAAGGGGGGATCGCATCGGTCCCTGACTTACGCATTCTGCCTCTCC-AGTCTGCTGAGC
64 AGCACGCAA-GGGGGACCGGGCCAATCCCCGGCTTGCGCATTATACCTCTCCGA-CCGGCTCAAC
* *
27495872 ACCCGCACGCTCATTTCATGGGTTGACTTAG
127 GCCCGCACGTTCATTTCATGGGTTGACTTAG
* ** * * *
27495903 GCATA-TGAAGTTCATTCCCGGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCAGGACCAGT
1 GCATACAG-AGTTCATTCCTAGTCTAAGATCAGAC-CGACCGAGGGTTGTGGCAGCAGGACCGGT
27495967 AGCA
64 AGCA
27495971 GGATCGACAG
Statistics
Matches: 791, Mismatches: 187, Indels: 97
0.74 0.17 0.09
Matches are distributed among these distances:
154 1 0.00
155 116 0.15
156 4 0.01
157 20 0.03
158 187 0.24
159 336 0.42
160 3 0.00
161 1 0.00
162 2 0.00
163 1 0.00
164 2 0.00
169 82 0.10
170 35 0.04
171 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGACCGAGGGTTGTGGCAGCAGGACCGGTAG
CACGCAAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTATACCTCTCCGACCGGCTCAACGCCC
GCACGTTCATTTCATGGGTTGACTTAG
Found at i:27495149 original size:502 final size:502
Alignment explanation
Indices: 27494252--27495161 Score: 1255
Period size: 502 Copynumber: 1.8 Consensus size: 502
27494242 TCGTGGGTTA
* *
27494252 ACTTAGGCATATAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCTGAATCTAAGATCAGA
1 ACTTAGGCATACAGAGTCCATCCCCAGTCTAAGCATACGAAGTTCATTCTGAATCTAAGATCAGA
27494317 CCGGATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGAGGACCAGGCCGATCCCCAGCTT
66 CCGGATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGAGGACCAGGCCGATCCCCAGCTT
*
27494382 GCGCATTCTGCCTCTCCAACTGGTTGAGCGCTCGCACGCCCTTTGCATGGGTTGGCTTAGGCATA
131 GCGCATTCTACCTCTCCAACTGGTTGAGCGCTCGCACGCCCTTTGCATGGGTTGGCTTAGGCATA
* * * * *
27494447 GGGAGTTCATTCCATGTCTAAGCCCCACTCGGACCGAGGGTTGTGGCAGTGGGACTGGCAGCACC
196 GGGAGTTCATTCCATGTCTAAGCCCCACTCGAACCAAGGGTTCTGGCAGCGGGACCGGCAGCACC
*** * * * * *
27494512 TAGAGGGGGATCGGGTTGATCCCCAGCTTGTGCATTATGCCTCTTCGGCCGGCTCAGCGCCTGCA
261 TAGAGGGGGATCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAACGCCCGCA
* ** *
27494577 TGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACTGGATCG
326 TGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCG
*
27494642 AGGGTTGTGGTAGCAGGACCAGCAGCAGGATCGACAGCGCATTCTGCACATTTTTCCTCTCCAAC
391 AGGGTTGTGGCAGCAGGACCAGCAGCAGGATCGACAGCGCATTCTGCACATTTTTCCTCTCCAAC
27494707 CGACCTCTCCGGTCGATTGAGCACCCACACGATCATTTCATGGTTTG
456 CGACCTCTCCGGTCGATTGAGCACCCACACGATCATTTCATGGTTTG
* *
27494754 ACTTAGGCATACGGAGTCCATCCCCAGTCTAAGCATAC-AGAGTTCATTCCT-AGTCTAAGATC-
1 ACTTAGGCATACAGAGTCCATCCCCAGTCTAAGCATACGA-AGTTCATT-CTGAATCTAAGATCA
** * *
27494816 GAATTGGATCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAAGGG-GGACC-GTGCCGATCCCC
64 G-ACCGGATCGAGGGTTGCGGCAGCAGGATCGATAGCACGC-AGGGAGGACCAG-GCCGATCCCC
* * ** * * * *
27494879 GGCTTGTGCATTCTACCTCTCC-GGTCGGTTGAGTGC-CTGCACGTTCGTTT-CATTGGTTGGCT
126 AGCTTGCGCATTCTACCTCTCCAACT-GGTTGAGCGCTC-GCACG-CCCTTTGCATGGGTTGGCT
27494941 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC-CGAACCAAGGGTTCTGGCAGCGGGACC
188 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC-ACTCGAACCAAGGGTTCTGGCAGCGGGACC
* ** * * *
27495005 GGTAGCATGTTGAGGGGGATCGGGCCAATCCTCGGCTTGCGCATTATGCCTCTCCGACCGGCTCA
252 GGCAGCACCTAGAGGGGGATCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCA
* * * *
27495070 ACGCCCGCATGTTCATTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCTAGTCTAAGATCA
317 ACGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGA-AGTTCATTCCCAATCTAAGATCA
27495134 GACCAGACCGAGGGTTGTGGCAGCAGGA
381 GACCAGACCGAGGGTTGTGGCAGCAGGA
27495162 TCGACAGTAC
Statistics
Matches: 353, Mismatches: 45, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
501 6 0.02
502 335 0.95
503 12 0.03
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (502 bp):
ACTTAGGCATACAGAGTCCATCCCCAGTCTAAGCATACGAAGTTCATTCTGAATCTAAGATCAGA
CCGGATCGAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGAGGACCAGGCCGATCCCCAGCTT
GCGCATTCTACCTCTCCAACTGGTTGAGCGCTCGCACGCCCTTTGCATGGGTTGGCTTAGGCATA
GGGAGTTCATTCCATGTCTAAGCCCCACTCGAACCAAGGGTTCTGGCAGCGGGACCGGCAGCACC
TAGAGGGGGATCGGGCCAATCCCCAGCTTGCGCATTATGCCTCTCCGACCGGCTCAACGCCCGCA
TGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCG
AGGGTTGTGGCAGCAGGACCAGCAGCAGGATCGACAGCGCATTCTGCACATTTTTCCTCTCCAAC
CGACCTCTCCGGTCGATTGAGCACCCACACGATCATTTCATGGTTTG
Found at i:27496098 original size:26 final size:26
Alignment explanation
Indices: 27496062--27496114 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27496052 TTTGACTTAG
27496062 GCATACGGAGTCCATCCCCAGTCTAA
1 GCATACGGAGTCCATCCCCAGTCTAA
* * *
27496088 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTCCATCCCCAGTCTAA
27496114 G
1 G
27496115 ATCGAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATCCCCAGTCTAA
Found at i:27497569 original size:159 final size:159
Alignment explanation
Indices: 27496088--27497633 Score: 766
Period size: 159 Copynumber: 9.7 Consensus size: 159
27496078 CCCAGTCTAA
* * ** * *
27496088 GCATACGGAGTTCATTCCTAGTCTAAGATCGAATTGGA-TCGAGGGTTGTGGCAGCAGGATCGGT
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGAACT-GAGGGTTGTGGCAGCAGGATCGAT
* * * * * * ** * *
27496152 AGCACGCA-AGGGGGACCGTGCCGATCCCCGGCTTGTGCATTCTACCTCTCCGGTCGGTTGAGTG
65 AGCACGCAGAGGGGGACCGGGCCGATCCCAGACTTGCGCATTATGCCTCTCCGACCGGCTGAGCG
* * * * * *
27496216 CCTGCACGTTCGTTTCATTGGTTGGCTTAG
130 CCCGAACGCTCATTTCATGGGTTGACTTAG
* * ** * ** * * * *
27496246 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGAACCAAGGGTTCTGGCAGCGGGACCGGT
1 GCATACGAAGTTCATTCCCA-GTCTAAGATCGAACCGAACTGAGGGTTGTGGCAGCAGGATCGAT
* ** * * * * *
27496310 AGCATGTTGAGGGGGATCGGGCCAATCCTC-GGCTTGCGCATTATGCCTCTCCGACCGGCTCAAC
65 AGCACGCAGAGGGGGACCGGGCCGATCC-CAGACTTGCGCATTATGCCTCTCCGACCGGCTGAGC
* * * *
27496374 GCCCGCATGTTCATTTCGTGGGTTGACTTAG
129 GCCCGAACGCTCATTTCATGGGTTGACTTAG
* *
27496405 GCATAC-AGAGTTCATTCCTAGTCTAAGATC-AGACC-AGACCGAGGGTTGTGGCAGCAGGATCG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGA-ACCGA-ACTGAGGGTTGTGGCAGCAGGATCG
* * * * * * * * *
27496467 ACAGTACGCA-AGGGGGGGCTGGGCCGGT-CC---CTTACGCATTCTGCCTCTCCAAGCGGCTGA
63 ATAGCACGCAGA-GGGGGACCGGGCCGATCCCAGACTTGCGCATTATGCCTCTCCGACCGGCTGA
* * * *
27496527 GCGCCCGCACGCCCATTTCGTGGGTTGGCTTAG
127 GCGCCCGAACGCTCATTTCATGGGTTGACTTAG
* * ** * * * * * * * * *
27496560 GCATAGGGAGTTCATTCCACA-TCTAAGCCCCAGCAGGATTGAGGGTTGTGGCAGCGGGACCAAC
1 GCATACGAAGTTCATTCC-CAGTCTAAGATCGAACCGAACTGAGGGTTGTGGCAGCAGGATCGAT
* * *** * * * ** *
27496624 AACACGCAGAGGGGGGCCGGGGTAATCCCCAG-CTTGCGCATTCTACCTCTCCGGCCGTTTGAGT
65 AGCACGCAGAGGGGGACCGGGCCGAT-CCCAGACTTGCGCATTATGCCTCTCCGACCGGCTGAGC
* *
27496688 GCCC-ACACGCTCGTTTCATGGGTTGGCTTAG
129 GCCCGA-ACGCTCATTTCATGGGTTGACTTAG
* * ** * * * * *
27496719 GCATACGGAGTTCATT-CCATTCTAAGCCCCAATCGAAATGAGGGTTGCGGTAGCAGGACTAGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGTGGCAGCAGGA-T----
* * * * * ** * **
27496783 GCAGGAATGGCAGCACGCA-TGGGGGACCAGACCGATCCCCGGCTTGCATATTTTTTCTCTCC-A
61 -C--G-AT---AGCACGCAGAGGGGGACCGGGCCGATCCCAGACTTGCGCATTATGCCTCTCCGA
* * * * *
27496846 GCCAGCTGAGCACCCGCACAG-TCGTTTCATGGGTTGGCTTAG
119 -CCGGCTGAGCGCCCGAAC-GCTCATTTCATGGGTTGACTTAG
* ** * * * *
27496888 GCATACAAAGTTCATTCCACA-TCTAAGCCCCAGCC-AGACCGAGGGTTCTGGCAGC-GGCA-CG
1 GCATACGAAGTTCATTCC-CAGTCTAAGATCGAACCGA-ACTGAGGGTTGTGGCAGCAGG-ATCG
* * * * * * * *
27496949 ACAGCACGCAGATGGGGACC-GGCTTGATCCCTGACTTGCGTATTATGCCTCTCCGGCTGGCTCA
63 ATAGCACGCAGAGGGGGACCGGGC-CGATCCCAGACTTGCGCATTATGCCTCTCCGACCGGCTGA
* *
27497013 GTGCCCGAACGCTCATTTCGTGGGTTGACTTAG
127 GCGCCCGAACGCTCATTTCATGGGTTGACTTAG
* * * * * *
27497046 GCATACAAAGTTCATTTCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATCGATA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGTGGCAGCAGGATCGATA
* * * * * * * * *
27497111 GCACCCA-AGGGGGGATCGGACC-AGTCCCTGACTTGTGCATTCTACCTCTCTAGTA--TGCTGA
66 GCACGCAGA-GGGGGACCGGGCCGA-TCCCAGACTTGCGCATTATGCCTCTC-CG-ACCGGCTGA
* *
27497172 GCACCCGCACGCTCATTTCATGGGTTGACTTAG
127 GCGCCCGAACGCTCATTTCATGGGTTGACTTAG
* * * *
27497205 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGTGGCAGCAGGATCGATA
** ** * * * * * *
27497270 GCACATAG-GGGGGACTAGGTCGGTCCCTAG-CTTGTGCATTCTGCCTCTTCGATCGGCTGAGCG
66 GCACGCAGAGGGGGACCGGGCCGATCCC-AGACTTGCGCATTATGCCTCTCCGACCGGCTGAGCG
*** * * *
27497333 CCCGCTTGCCCGTTTCATGGGTTGGCTTAG
130 CCCGAACGCTCATTTCATGGGTTGACTTAG
* * * * ** * * * ** *
27497363 GAATAGGGAGTTCATT-CCATGTGTAAGCCCTATCCAGATC-GAGGGTTGTGGCAGTGGGACCGA
1 GCATACGAAGTTCATTCCCA-GTCTAAGATCGAACC-GAACTGAGGGTTGTGGCAGCAGGATCGA
* *
27497426 TAGCACGCAGAGGGGGACCGGGCCGATCCCCAG-CTTGCGTATTATGCCTCTCCGACCGGCTTAG
64 TAGCACGCAGAGGGGGACCGGGCCGAT-CCCAGACTTGCGCATTATGCCTCTCCGACCGGCTGAG
* ** *
27497490 CGCCCGAATGCTGGTTTCGTGGGTTGACTTAG
128 CGCCCGAACGCTCATTTCATGGGTTGACTTAG
* * * * * * *
27497522 GCATACGGAGTTCATTCCCAGTCTAAGATCTAACCGAACTAAAGGTTGCGGTAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGTGGCAGCAGGATCGATA
* * ** * * *
27497587 GCACGTAG-GGGGGATCGGATCGATCCCCGACTAGCGCATTCTGCCTC
66 GCACGCAGAGGGGGACCGGGCCGATCCCAGACTTGCGCATTATGCCTC
27497634 ACCAGTCGGC
Statistics
Matches: 1055, Mismatches: 268, Indels: 130
0.73 0.18 0.09
Matches are distributed among these distances:
155 115 0.11
156 4 0.00
157 28 0.03
158 332 0.31
159 444 0.42
160 13 0.01
161 1 0.00
163 1 0.00
164 1 0.00
167 1 0.00
168 4 0.00
169 74 0.07
170 35 0.03
171 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGTGGCAGCAGGATCGATA
GCACGCAGAGGGGGACCGGGCCGATCCCAGACTTGCGCATTATGCCTCTCCGACCGGCTGAGCGC
CCGAACGCTCATTTCATGGGTTGACTTAG
Found at i:27497743 original size:26 final size:26
Alignment explanation
Indices: 27497693--27497745 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27497683 GTTGACTTAG
*
27497693 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATCCTCAATCTAA
27497719 GCATACGGAGTTCATTCC-CAATCTAA
1 GCATACGGAGTTCA-TCCTCAATCTAA
27497745 G
1 G
27497746 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAATCTAA
Found at i:27498174 original size:11 final size:11
Alignment explanation
Indices: 27498158--27498183 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
27498148 CCTGGGGTGC
27498158 CATCGTCGGAG
1 CATCGTCGGAG
27498169 CATCGTCGGAG
1 CATCGTCGGAG
27498180 CATC
1 CATC
27498184 ACTGGAGAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:27498800 original size:26 final size:26
Alignment explanation
Indices: 27498770--27498820 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
27498760 GTTGACTTAG
* *
27498770 GCATACGGAGTTCATCCCCAGTCTAC
1 GCATACAGAGTTCATCCCCAATCTAC
*
27498796 GCATACAGAGTTCATTCCCAATCTA
1 GCATACAGAGTTCATCCCCAATCTA
27498821 AGATTGGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAC
Found at i:27499086 original size:159 final size:159
Alignment explanation
Indices: 27498923--27499614 Score: 544
Period size: 159 Copynumber: 4.4 Consensus size: 159
27498913 CTGGTTGGGT
* * **
27498923 GCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
1 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAC
* * * *
27498988 CGAATCGAGGGTTGTGGCAGCGGGACCGACAACACGCAGAGGGGGA-CTGGGTCGATCCCCGACT
66 CGAACCGAGGGTTGTGGCAGCGGGACCGACAACACACAGAGGGGGATC-GGGCCAATCCCCGACT
* *
27499052 TGCGCATTATGCCTCTACGGTCGGCACAGT
130 TGCGCATTATGCCTCTTCGGTCGGCACAGC
* * * * * ****
27499082 GCCCGAACACTTGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATTGAA
1 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAA
* * * * * *
27499146 CCGAACTGAGGGTTGTGGTAGCTGGATCGGCAACACACAG-GGGGGATCGGGCCAATCCCTGACT
65 CCGAACCGAGGGTTGTGGCAGCGGGACCGACAACACACAGAGGGGGATCGGGCCAATCCCCGACT
* * * *
27499210 TGTGCATTCTGCCTCTTCAG-CTG-ACTGAGC
130 TGCGCATTATGCCTCTTCGGTCGGCAC--AGC
* * * * * * * *
27499240 ACCTGGACGC-CGGTTTCATGGATTGGTTTAGGCATAGGGACTTCATTCCATGTCTAGGCCCCAA
1 GCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAA
* ** * * * * *
27499304 CCGGACCGAGGGTTGTGGCAATGGGACCGGCAGCACACAGAGGGGGATCGGGCCGATCCCTGGCT
65 CCGAACCGAGGGTTGTGGCAGCGGGACCGACAACACACAGAGGGGGATCGGGCCAATCCCCGACT
* * *
27499369 TGCGCATTATGCCTCTTTGATCGGCTCTA-C
130 TGCGCATTATGCCTCTTCGGTCGGCAC-AGC
* * * * * * **
27499399 GCTCGCACGCTCGTTTCTTGGGTTGACTTATGCATACAGAGTTCATTCCCA-ATCTAAG-ATCAG
1 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCA-
* * * ** * * * *
27499462 ACTGAACCGAGGGTTGCGGTAGCAAGATCGAC-A-ACAC-GTAGGGGGACCGAGCCAATCCCCGG
64 ACCGAACCGAGGGTTGTGGCAGCGGGACCGACAACACACAG-AGGGGGATCGGGCCAATCCCCGA
* * * ****
27499524 CTTGCGCATTTTACCTCTCCGGTCGATTGAGC
128 CTTGCGCATTATGCCTCTTCGGTCGGCACAGC
* * *
27499556 GCCCGCACGCTCGTTTCGTGGTTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
1 GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
27499615 ATACGGAGTT
Statistics
Matches: 407, Mismatches: 110, Indels: 33
0.74 0.20 0.06
Matches are distributed among these distances:
156 7 0.02
157 96 0.24
158 114 0.28
159 179 0.44
160 10 0.02
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAAC
CGAACCGAGGGTTGTGGCAGCGGGACCGACAACACACAGAGGGGGATCGGGCCAATCCCCGACTT
GCGCATTATGCCTCTTCGGTCGGCACAGC
Found at i:27499379 original size:317 final size:316
Alignment explanation
Indices: 27498929--27499614 Score: 770
Period size: 317 Copynumber: 2.2 Consensus size: 316
27498919 GGGTGCCCGC
* * ** *
27498929 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAATC
1 ACGCCCGTTTCATGGATTGGCTTAGGCATAGGGACTTCATTCCATGTCTAAGCCCCAACCGAACC
* * *
27498994 GAGGGTTGTGGCAGCGGGACCGACAACACGCAGAGGGGGACTGGGTCGATCCCCGACTTGCGCAT
66 GAGGGTTGTGGCAACGGGACCGACAACACACAGAGGGGGACTGGGCCGATCCCCGACTTGCGCAT
* * *
27499059 TATGCCTCTACGGTCGGCAC-AGTGCCCGAACACTTGTTTCATGGGTTGACTTAGGCATAC-GAA
131 TATGCCTCTACGATCGGCACTA-CGCCCGAACACTCGTTTCATGGGTTGACTTAGGCATACAG-A
* * * * ** *
27499122 GTTCATTCCCAGTCTAAGAT-TGAACCGAACTGAGGGTTGTGGTAGCTGGATCGGCAACACACAG
194 GTTCATTCCCAATCTAAGATCAG-ACCGAACCGAGGGTTGCGGTAGCAAGATCGACAACACACA-
* *
27499186 GGGGGATCGGGCCAATCCCTGACTTGTGCATTCTGCCTCTTCAGCTGACTGAGCACCTGG
257 GGGGGACCGAGCCAATCCCTGACTTGTGCATTCTGCCTCTTCAGCTGACTGAGCACCTGG
* * * *
27499246 ACGCCGGTTTCATGGATTGGTTTAGGCATAGGGACTTCATTCCATGTCTAGGCCCCAACCGGACC
1 ACGCCCGTTTCATGGATTGGCTTAGGCATAGGGACTTCATTCCATGTCTAAGCCCCAACCGAACC
* * * * *
27499311 GAGGGTTGTGGCAATGGGACCGGCAGCACACAGAGGGGGA-TCGGGCCGATCCCTGGCTTGCGCA
66 GAGGGTTGTGGCAACGGGACCGACAACACACAGAGGGGGACT-GGGCCGATCCCCGACTTGCGCA
** * * * * * *
27499375 TTATGCCTCTTTGATCGGCTCTACGCTCGCACGCTCGTTTCTTGGGTTGACTTATGCATACAGAG
130 TTATGCCTCTACGATCGGCACTACGCCCGAACACTCGTTTCATGGGTTGACTTAGGCATACAGAG
* **
27499440 TTCATTCCCAATCTAAGATCAGACTGAACCGAGGGTTGCGGTAGCAAGATCGACAACACGTAGGG
195 TTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAAGATCGACAACACACAGGG
* * * * * * * * * * *
27499505 GGACCGAGCCAATCCCCGGCTTGCGCATTTTACCTC-TCCGGTCGATTGAGCGCCCGC
260 GGACCGAGCCAATCCCTGACTTGTGCATTCTGCCTCTTCAGCT-GACTGAGCACCTGG
* * * * * *
27499562 ACGCTCGTTTCGTGGTTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
1 ACGCCCGTTTCATGGATTGGCTTAGGCATAGGGACTTCATTCCATGTCTAAGC
27499615 ATACGGAGTT
Statistics
Matches: 304, Mismatches: 60, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
315 4 0.01
316 87 0.29
317 210 0.69
318 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (316 bp):
ACGCCCGTTTCATGGATTGGCTTAGGCATAGGGACTTCATTCCATGTCTAAGCCCCAACCGAACC
GAGGGTTGTGGCAACGGGACCGACAACACACAGAGGGGGACTGGGCCGATCCCCGACTTGCGCAT
TATGCCTCTACGATCGGCACTACGCCCGAACACTCGTTTCATGGGTTGACTTAGGCATACAGAGT
TCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAAGATCGACAACACACAGGGG
GACCGAGCCAATCCCTGACTTGTGCATTCTGCCTCTTCAGCTGACTGAGCACCTGG
Found at i:27499624 original size:26 final size:25
Alignment explanation
Indices: 27499587--27499637 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
27499577 TTTGGCTTAG
27499587 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCA-GTCTAA
*
27499613 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATTCCAGTCTAA
27499638 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:27500682 original size:26 final size:26
Alignment explanation
Indices: 27500652--27500704 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27500642 GTTGACTGAG
* *
27500652 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAATTCATTCCCA-GTCTAA
27500678 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
27500704 G
1 G
27500705 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:27501057 original size:25 final size:26
Alignment explanation
Indices: 27501020--27501071 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
27501010 GTTGACTTAG
27501020 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
27501046 GCATAC-GAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
27501071 G
1 G
27501072 ATCGGACGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:27501372 original size:159 final size:157
Alignment explanation
Indices: 27501081--27501548 Score: 487
Period size: 158 Copynumber: 2.9 Consensus size: 157
27501071 GATCGGACGG
* * * *
27501081 GACCGAGGGTTGTGGTAGCAGGATCGGCAGCATGCAGGGGGGACCGGGTCGATCCCCGGCTTGCT
1 GACCGAGGGTTGCGGTAGCAGGATCGACAGCATGAAGGGGGGACCGGGTCGAT-CCCGGCTTGCA
* * * * *
27501146 CATTCTAG-CTCTCCGATCGACTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCATAGG
65 CATTCT-GCCTCTTCG-TCGGCTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACG
*
27501210 GAGTTCATTCCATGTCTAAGCCCCAG-CCA
128 GAGTTCATTCCATGTCTAAGCACCAGACCA
* * * *
27501239 GACCGAGGGTTGCGGTAGCGGGACCGACAGCATGAAGAGGGGGACCGGGCCGATAGCCGGCTTGC
1 GACCGAGGGTTGCGGTAGCAGGATCGACAGCATGAAG-GGGGGACCGGGTCGAT-CCCGGCTTGC
* * * * * * ** *
27501304 GCATTATGCCTCTTCAGCCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTTACTTATGCATACG
64 ACATTCTGCCTCTTC-GTCGGCTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACG
* *
27501369 GAGTTCATTCCCA-GTCTAAG-ATCAGATCA
128 GAGTTCATT-CCATGTCTAAGCACCAGACCA
* * * * * * *
27501398 GACTGAGGGTTGCGATAGTAGGATCGACAACACGTAGGGGGGATCGGGTCGATCCTCGGCTTGCA
1 GACCGAGGGTTGCGGTAGCAGGATCGACAGCATGAAGGGGGGACCGGGTCGATCC-CGGCTTGCA
* * * *
27501463 CATTCTTCATCTCTT-GTCGGCTGAGTGCCCGCACACTCATTTCATGGGTTGGCCTAGGCAGACG
65 CATTCTGC--CTCTTCGTCGGCTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACG
27501527 GAGTTCATTCCATGTCTAAGCA
128 GAGTTCATTCCATGTCTAAGCA
27501549 TATGAAGTTC
Statistics
Matches: 251, Mismatches: 49, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.02
158 119 0.47
159 119 0.47
160 9 0.04
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GACCGAGGGTTGCGGTAGCAGGATCGACAGCATGAAGGGGGGACCGGGTCGATCCCGGCTTGCAC
ATTCTGCCTCTTCGTCGGCTGAGCGCCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCACCAGACCA
Found at i:27501656 original size:11 final size:11
Alignment explanation
Indices: 27501636--27501675 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
27501626 CCCGGGGCAC
27501636 CATCGTCGGAG
1 CATCGTCGGAG
*
27501647 CATCGCCGGAG
1 CATCGTCGGAG
27501658 CATCGTCGGAG
1 CATCGTCGGAG
*
27501669 TATCGTC
1 CATCGTC
27501676 AGAGAGCCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:27502630 original size:26 final size:26
Alignment explanation
Indices: 27502601--27502653 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27502591 GTTGACTTAG
*
27502601 GCATATGGAGGTCA-TCCCTAGTCTAA
1 GCATACGGAGGTCATTCCC-AGTCTAA
*
27502627 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
27502653 G
1 G
27502654 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:27507000 original size:59 final size:59
Alignment explanation
Indices: 27506929--27507047 Score: 229
Period size: 59 Copynumber: 2.0 Consensus size: 59
27506919 TCAAGAAACT
*
27506929 AGGGGGTCTCTTAGAGCCATTGCCAGTGCCAGAGTGACCATGGGAGAGTGTTTCTCTAG
1 AGGGGGTCTCTTAGAGCCATTGCCAGTGCCAGAGCGACCATGGGAGAGTGTTTCTCTAG
27506988 AGGGGGTCTCTTAGAGCCATTGCCAGTGCCAGAGCGACCATGGGAGAGTGTTTCTCTAG
1 AGGGGGTCTCTTAGAGCCATTGCCAGTGCCAGAGCGACCATGGGAGAGTGTTTCTCTAG
27507047 A
1 A
27507048 CTTTATAGTC
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (59 bp):
AGGGGGTCTCTTAGAGCCATTGCCAGTGCCAGAGCGACCATGGGAGAGTGTTTCTCTAG
Found at i:27509453 original size:158 final size:158
Alignment explanation
Indices: 27509002--27509516 Score: 420
Period size: 158 Copynumber: 3.2 Consensus size: 158
27508992 TCATTCCCAA
* * * * *
27509002 TCTAAGATCAGATCGGATTGAGGGTTGCGGCAGTAGGATCGACAGCACGC-AGGGGGGAACTGGG
1 TCTAAGATCAGATCAGA-TGAGGGTTGTGGCAGCAGGATCGACAGCACGCTA-GAGGGAACAGGG
* ** * *
27509066 CCGATCCTTGGCTTGTGCATTCTGCCTCTCCGA-TCGGCTGAG-GCGCCGCACGCACTATTCCCC
64 CCGATCCTCGGCTTAAGCATTCTGCCTCTCCGACT-GGCTGAGTGC-CCGCACGCTC-ATT--TC
* *
27509129 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
124 ATGGGTTGACTTAGGCATAGGAAGTTCATTCCATG
** * * * *** *
27509164 TCTAAGCCCAGTTCAGATCGAGGGTTGTGGCAGC-GGAACCGGCCTAACG-TAGAGGGGGACCAG
1 TCTAAGATCAGATCAGAT-GAGGGTTGTGGCAGCAGG-ATCGACAGCACGCTAGA--GGGAACAG
* * * ** * * * *
27509227 GGCCGATCCCCGACTTAAGCATTATGCCTCTTTGACTGGCTCAGTGCCCGTAGGCTCGTTTCATG
62 GGCCGATCCTCGGCTTAAGCATTCTGCCTCTCCGACTGGCTGAGTGCCCGCACGCTCATTTCATG
*
27509292 GGTTGACTTATGCATAGGAAGTTCATTCCCA-G
127 GGTTGACTTAGGCATAGGAAGTTCATT-CCATG
* * * *
27509324 TCTAAGATCAGATCAGACTGAGGTTTATGGCAGCAGGATCGACAGCACGCTCGAGGGATC-GGGC
1 TCTAAGATCAGATCAGA-TGAGGGTTGTGGCAGCAGGATCGACAGCACGCTAGAGGGAACAGGGC
* * * * *
27509388 CGATCCTCGGCTTACGCATTCTACCTCTCCAACTGGCTGAGTGCCCACACGCTCATTTCGTGGGT
65 CGATCCTCGGCTTAAGCATTCTGCCTCTCCGACTGGCTGAGTGCCCGCACGCTCATTTCATGGGT
27509453 TGGA-TTAGGCATACGG-AGTTCATTCCATG
130 T-GACTTAGGCATA-GGAAGTTCATTCCATG
** *
27509482 TCTAAGCCCTAG-TCAGACCGAGGGTTGTGGCAGCA
1 TCTAAGATC-AGATCAGA-TGAGGGTTGTGGCAGCA
27509517 AGACCGGCAG
Statistics
Matches: 275, Mismatches: 63, Indels: 34
0.74 0.17 0.09
Matches are distributed among these distances:
157 3 0.01
158 100 0.36
159 11 0.04
160 63 0.23
161 13 0.05
162 36 0.13
163 46 0.17
164 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
TCTAAGATCAGATCAGATGAGGGTTGTGGCAGCAGGATCGACAGCACGCTAGAGGGAACAGGGCC
GATCCTCGGCTTAAGCATTCTGCCTCTCCGACTGGCTGAGTGCCCGCACGCTCATTTCATGGGTT
GACTTAGGCATAGGAAGTTCATTCCATG
Found at i:27509681 original size:26 final size:26
Alignment explanation
Indices: 27509645--27509697 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27509635 GTTGACTTAG
27509645 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
27509671 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27509697 G
1 G
27509698 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27510372 original size:26 final size:26
Alignment explanation
Indices: 27510342--27510394 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27510332 GTTGACTTAG
27510342 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
27510368 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27510394 G
1 G
27510395 ATCAAATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27511689 original size:159 final size:160
Alignment explanation
Indices: 27511357--27511743 Score: 394
Period size: 159 Copynumber: 2.4 Consensus size: 160
27511347 TCTAGTCGGC
* * *
27511357 TGAGCGCCCGCACGC-CAATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCAAAGC
1 TGAGCGCCCACACGCTC-ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * * * *
27511421 CCCAGCCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCATGTAGAGGTGGACCGGGCCGATCCC
65 ACCAGCCGAACCGAGGGTTGCGATAGCAGGACCGACAGCACGTAGAGGGGGACCGGGCCGATCCC
*
27511486 CGACTTGCACATTACGCCTTTCCGGCCAGCT
130 CGACTTGCACATTACGCCTTTCCGACCAGCT
* * *
27511517 T-AGTGCCCTCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-
1 TGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGC
** * * *
27511579 ATTAGACCGAACTGAGGGTTGCGATAGCAGGATCGACAGCACGTAG-GTGGGGACCGGGCTGATC
65 ACCAG-CCGAACCGAGGGTTGCGATAGCAGGACCGACAGCACGTAGAG-GGGGACCGGGCCGATC
* * **
27511643 CCTGGCTTGTGCATT-CTGCCTCTT-CGACCAG-T
128 CCCGACTTGCACATTAC-GCCT-TTCCGACCAGCT
* * * *
27511675 TGAGCACCCACACGCATGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTA
1 TGAGCGCCCACA--C--GCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
27511740 AGCA
62 AGCA
27511744 TACGGAGTTC
Statistics
Matches: 186, Mismatches: 28, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
158 7 0.04
159 128 0.69
160 4 0.02
161 1 0.01
163 44 0.24
164 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (160 bp):
TGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
CCAGCCGAACCGAGGGTTGCGATAGCAGGACCGACAGCACGTAGAGGGGGACCGGGCCGATCCCC
GACTTGCACATTACGCCTTTCCGACCAGCT
Found at i:27511744 original size:26 final size:26
Alignment explanation
Indices: 27511715--27511767 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27511705 GTTGGCTTAG
*
27511715 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27511741 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27511767 G
1 G
27511768 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27512635 original size:158 final size:158
Alignment explanation
Indices: 27512168--27512646 Score: 459
Period size: 158 Copynumber: 3.0 Consensus size: 158
27512158 TTGCGGTAAT
* * * * ** * * *
27512168 AGGATCGACAGCAAGTAGGGGGGACCGGACCGATCCTTGACTTGTGCATTCTGCCTCTCCTGCT-
1 AGGATCGATAGCACGTAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCC-GATC
* * * * *
27512232 GGCTGACCACTCGTCCAC-C-CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCCTTCCATGTCT
65 GACTGAACACTCG--CACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCT
* * * * *
27512295 AAGCCCCAGCCAAACCGAGGGTTATGGTAGT
128 AAGCCCCAGCCAGACCGAAGGTTGTGGCAGC
* * * * * * * *
27512326 TGGA-CCAGTAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATACTTCTTCGGT
1 AGGATCGA-TAGCACGTA-AGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAT
* * * * * * *
27512390 C-AGCTCAGCACCCACACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCC-CAATC
64 CGA-CTGAACACTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAC-GTC
** **
27512453 TAAG-ATCAGACCAGACCGAAGGTTGCAGCAGC
127 TAAGCCCCAG-CCAGACCGAAGGTTGTGGCAGC
27512485 AGGATCGATAGCACGTAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCG
1 AGGATCGATAGCACGTAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCG
** *
27512550 ACTGAATGCTCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAG
66 ACTGAACACTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAG
*
27512615 CCCCAGCCAGACCGACGGTTGTGGCAGC
131 CCCCAGCCAGACCGAAGGTTGTGGCAGC
27512643 AGGA
1 AGGA
27512647 CCTACAGTGC
Statistics
Matches: 250, Mismatches: 59, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 5 0.02
158 132 0.53
159 111 0.44
160 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
AGGATCGATAGCACGTAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCG
ACTGAACACTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAG
CCCCAGCCAGACCGAAGGTTGTGGCAGC
Found at i:27513085 original size:159 final size:158
Alignment explanation
Indices: 27512804--27513298 Score: 488
Period size: 158 Copynumber: 3.1 Consensus size: 158
27512794 TAAGCATATG
* * *
27512804 GAGTTCATTCCCA-GTCTAAGATCGGA-CCGAACCGAGGGTTGC-GACAGCAGGATC-GACAGCA
1 GAGTTCATT-CCATGTCTAAGATCGGATCAG-ACCAACGGTTGCAG-CAGCAGGA-CGGACAGCA
* * * *
27512865 CGCAGGGGGGACCAGGCTGATTCCCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCCGC
62 CGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGC
* **
27512930 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
127 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACA
** ** **
27512962 GAGTTCATTCCATGTCTAA-ACTC-GAGTCAGATTGAA-GGTTGTGGCAGTGGGACCGG-CAGCA
1 GAGTTCATTCCATGTCTAAGA-TCGGA-TCAGA-CCAACGGTTGCAGCAGCAGGA-CGGACAGCA
* * * *
27513023 CGCAGAGGGGGACCGGG-TCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCACCC
62 CGCAG-GGGGGACCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCC
* * * * *
27513087 ACACGCTCGTTTCATGGGTTGACTTATGCATACC
125 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACA
* * *
27513121 GAGTTCATTCTCA-ATCTAAGATCGGATCGGACCAACGGTTGCAGTAGCAGGACGGACAGCACGC
1 GAGTTCATTC-CATGTCTAAGATCGGATCAGACCAACGGTTGCAGCAGCAGGACGGACAGCACGC
* * * * *
27513185 ACGGGGGATCGGGCTGATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTGAGCACCTGCACG
65 AGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACG
* *
27513250 CTCATTTCGTAGGTTGGCTTAGGCATACA
130 CTCGTTTCGTGGGTTGGCTTAGGCATACA
* *
27513279 AAGTTCATTCCATGTGTAAG
1 GAGTTCATTCCATGTCTAAG
27513299 CATACGGAGT
Statistics
Matches: 270, Mismatches: 51, Indels: 32
0.76 0.14 0.09
Matches are distributed among these distances:
157 8 0.03
158 135 0.50
159 122 0.45
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGATCGGATCAGACCAACGGTTGCAGCAGCAGGACGGACAGCACGCA
GGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGC
TCGTTTCGTGGGTTGGCTTAGGCATACA
Found at i:27513206 original size:684 final size:678
Alignment explanation
Indices: 27511834--27513299 Score: 1793
Period size: 684 Copynumber: 2.2 Consensus size: 678
27511824 AGGGGGCACT
* * * * * * * *
27511834 GGCTGATCCCTGGCTTACGCATTCTGCCCCTCCGACCGGCTGGGTGCCCTCACGATCATTCT-TG
1 GGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCT-GATGCCCGCACGCTCATTTTGTG
** * *
27511898 GGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCAA
65 GGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGCCCCAGCCAGACCGACGGTTGTGGCAA
* ** * *
27511963 TAGGACTGGTAGCGGGATCGGCAGCACGCAGAGGGGGATCGAGCTGAACCCCGACTTGCGCATTA
130 CAGGACTGACAGCGCGATCGGCAGCACGCAGAGGGGGATCGAGCTGAACCCCGACTTGCACATTA
* * *
27512028 TGCCCTTCAGCCAACCTTTTCGGCCGGCTACGCGCCCGCGCACTCATTTCATGGGTTGACTTAGG
195 TGCCCTTCAGCCAACCTCTCCGGCCGGCTACGCGCCCGCACACTCATTTCATGGGTTGACTTAGG
* * * * * *
27512093 CATACGGAGTTCATCTCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAGGATCGGATCGAGTG
260 CATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGGG
** * * * **
27512158 TTGCGGTAATAGGATCGACAGCAAGTAGGGGGGACCGGACCGATCCTTGACTTGTGCATTCTGCC
325 TTGCGACAACAGGATCGACAGCAAGCAGGGGGGACCGGACCGATCCTCGACTTACGCATTCTGCC
* * *
27512223 TCTCCTGCTGGCTGACCACTCGTCCACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCCTTC
390 TCTCCTGATGGCTGACCACCCGTCCACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
* * * * * *
27512288 CATGTCTAAGCCCCAGCCAAACCGAGGGTTATGGTAGTTGGACCAGTAGCACGTAGAGGGGGACC
455 CATGTCTAAACCCCAGCCAAACCGAAGGTTATGGCAGTGGGACCAGCAGCACGCAGAGGGGGACC
* * *
27512353 GGGTCGATCCCCGGCTTGCGCATTATACTTCTTCGGTCAGCTCAGCACCCACACGCTCGTTTCGT
520 GGGTCGATCCCCGGCTTGCGCATTATACCTCTTCGGCCAGCTCAGCACCCACACGCTCGTTTCAT
*
27512418 GGGTTGACTTATGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGCAGCA
585 GGGTTGACTTATGCATACCGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGCAGCA
* *
27512483 GCAGGATCGATAGCACGTAAGGGGGACCG
650 GCAGGATCGACAGCACGCAAGGGGGACCG
* * * *
27512512 GGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAATGCTCGCACGCTCGTTTTGTG
1 GGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTG-ATGCCCGCACGCTCATTTTGTG
* * *
27512577 GGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCCCCAGCCAGACCGACGGTTGTGGCAG
65 GGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGCCCCAGCCAGACCGACGGTTGTGGCAA
* * * * * * *
27512642 CAGGACCT-ACAGTGCGATCGGTAGCATGCAGAGGGGGATCGAGCTG-ATCCTGGCTTGCATATT
130 CAGGA-CTGACAGCGCGATCGGCAGCACGCAGAGGGGGATCGAGCTGAACCCCGACTTGCACATT
* * ** * *
27512705 ATGCCTCTTCGGTCGGCCTCTCCGGCCGGCTGA-GCGCCCGCACGCTCATTTCGTGGGTTGACTT
194 ATGCC-CTTCAGCCAACCTCTCCGGCCGGCT-ACGCGCCCGCACACTCATTTCATGGGTTGACTT
*
27512769 AGGCATACGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGA
257 AGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-G---G-
* * * *
27512834 ACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGACCAGG-CTGATTCC-CGGCTTAC
317 ACCGAGGGTTGCGACAACAGGATCGACAGCAAGCAGGGGGGACC-GGACCGA-TCCTCGACTTAC
* *
27512897 GCATTCTGCCTCTCC-GATCGGCTGAGCACCCG-CACGCCCGTTTCGTGGGTTGGCTTAGGCATA
380 GCATTCTGCCTCTCCTGAT-GGCTGACCACCCGTC-CACCCGTTTCGTGGGTTGGCTTAGGCATA
* * * * ** * *
27512960 GGGAGTTCATTCCATGTCTAAACTCGAGTCAGATTGAAGGTTGTGGCAGTGGGACCGGCAGCACG
443 GGGAGTTCATTCCATGTCTAAACCCCAGCCAAACCGAAGGTTATGGCAGTGGGACCAGCAGCACG
* *
27513025 CAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGCACCCACA
508 CAGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATACCTCTTCGGCCAGCTCAGCACCCACA
* * * *
27513090 CGCTCGTTTCATGGGTTGACTTATGCATACCGAGTTCATTCTCAATCTAAGATCGGATCGGACC-
573 CGCTCGTTTCATGGGTTGACTTATGCATACCGAGTTCATTCCCAATCTAAGATCAGACCAGACCG
* * *
27513154 AACGGTTGCAGTAGCAGGA-CGGACAGCACGCACGGGGGATCG
638 AA-GGTTGCAGCAGCAGGATC-GACAGCACGCAAGGGGGACCG
* * * *
27513196 GGCTGATCCCCGACTTGCACATTCTGCCTCTCCGGTCGGCTGA-GCACCTGCACGCTCATTTCGT
1 GGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGATGC-CC-GCACGCTCATTTTGT
* * * *
27513260 AGGTTGGCTTAGGCATACAAAGTTCATTCCATGTGTAAGC
64 GGGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGC
27513300 ATACGGAGTT
Statistics
Matches: 665, Mismatches: 105, Indels: 30
0.83 0.13 0.04
Matches are distributed among these distances:
677 1 0.00
678 65 0.10
679 196 0.29
680 4 0.01
682 2 0.00
683 9 0.01
684 383 0.58
685 5 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.23
Consensus pattern (678 bp):
GGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGATGCCCGCACGCTCATTTTGTGG
GTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAGCCCCAGCCAGACCGACGGTTGTGGCAAC
AGGACTGACAGCGCGATCGGCAGCACGCAGAGGGGGATCGAGCTGAACCCCGACTTGCACATTAT
GCCCTTCAGCCAACCTCTCCGGCCGGCTACGCGCCCGCACACTCATTTCATGGGTTGACTTAGGC
ATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGGGT
TGCGACAACAGGATCGACAGCAAGCAGGGGGGACCGGACCGATCCTCGACTTACGCATTCTGCCT
CTCCTGATGGCTGACCACCCGTCCACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC
ATGTCTAAACCCCAGCCAAACCGAAGGTTATGGCAGTGGGACCAGCAGCACGCAGAGGGGGACCG
GGTCGATCCCCGGCTTGCGCATTATACCTCTTCGGCCAGCTCAGCACCCACACGCTCGTTTCATG
GGTTGACTTATGCATACCGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGCAGCAG
CAGGATCGACAGCACGCAAGGGGGACCG
Found at i:27514004 original size:26 final size:26
Alignment explanation
Indices: 27513968--27514020 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27513958 GTTGACTTAG
27513968 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27513994 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27514020 G
1 G
27514021 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27514499 original size:26 final size:26
Alignment explanation
Indices: 27514469--27514521 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27514459 GTTGGCTTAG
*
27514469 GCATACGGTGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27514495 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27514521 G
1 G
27514522 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27515332 original size:158 final size:156
Alignment explanation
Indices: 27514798--27515345 Score: 480
Period size: 158 Copynumber: 3.5 Consensus size: 156
27514788 TCTCCGACTG
* * * * * * * *
27514798 GCCTCTCCGATCGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGACATACGGAGTTCA
1 GCCTTTCCGATCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCA
** * *
27514863 TTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGCAGGGGGAA
66 TT-CCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGTAGGGGG-A
* ** * * *
27514928 CCGGATCAATCCTCGGCTTGTGCATTCT
129 CTGGGCCGATCCCCGACTTGTGCATTCT
* * * * * * * *
27514956 ACTTTTTCGGTCGACTGAG-AGCCCGCACGCCCTTTTCGTGGGTTCACTT---CATAGGGAATTC
1 GCCTTTCCGATCGACTGAGCA-CCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTC
* * * * ** * *
27515017 ATTCCATGTCTAAGCTCCAGCCAGACAGAGGGTTGTGGTGGCAGGA-CTGGCAGCACGCATAGGG
65 ATTCCA-GTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGTAGGATC-GACAGCACG--TAGGG
*
27515081 GGACTGGGCCGATCCCCGACTTGCGCATTAC-
126 GGACTGGGCCGATCCCCGACTTGTGCATT-CT
* * * * * * * * *
27515112 GCCTCTT-CGGTTGGCTTAGCGCCTGCACGCTCGTTTCGTTGGTTCACTTATGCATACAGAGTTC
1 GCCT-TTCCGATCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTC
*
27515176 ATTCCTAGTCTAAGATCAAACCAGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGGGG
65 ATTCC-AGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGTAG-GGGG
*
27515241 ACTGGGCCGATCCCCAACTTGTGCATTCT
128 ACTGGGCCGATCCCCGACTTGTGCATTCT
* ** * *
27515270 GCCTTTCCGATCGACTGAGCACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGTATATGGAGTTCA
1 GCCTTTCCGATCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCA
27515335 TTCCATGTCTA
66 TTCCA-GTCTA
27515346 GGCATACGGA
Statistics
Matches: 303, Mismatches: 70, Indels: 34
0.74 0.17 0.08
Matches are distributed among these distances:
154 4 0.01
155 51 0.17
156 55 0.18
157 16 0.05
158 122 0.40
159 53 0.17
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.26
Consensus pattern (156 bp):
GCCTTTCCGATCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCA
TTCCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACGTAGGGGGACT
GGGCCGATCCCCGACTTGTGCATTCT
Found at i:27522012 original size:26 final size:26
Alignment explanation
Indices: 27521976--27522028 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27521966 GTTGACTTAG
* *
27521976 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
27522002 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
27522028 G
1 G
27522029 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:27522460 original size:158 final size:157
Alignment explanation
Indices: 27522002--27523507 Score: 776
Period size: 158 Copynumber: 9.1 Consensus size: 157
27521992 CCCAGTCTAA
* *
27522002 GCATACAGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGACAACAGGATCGGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGGCAACAGGATCGGCA
* ** * *
27522067 -CACGCAGGGGGGACGGGGCTAATCCCCGGCTTGCTCATTCTGCCTCTCTGGTCGGCTGAGTGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTC-GGTCGGCTGAGCGCC
* *
27522131 CGCACGCCCGTTTCATGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * *
27522159 GCATAGGGAGTTCATT-CCAGGTCTAAGCCCTAG-CTGGACCGAGGGTTGTGGTAACGGGATCGG
1 GCATACGGAGTTCATTCCCA-ATCTAAGATC-AGACTGGACCGAGGGTTGCGGCAACAGGATCGG
* * *
27522222 CAGCACGTAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTGAGC
64 CAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCT-CGGTCGGCTGAGC
*
27522287 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * * * *
27522318 GCATATGAAGTTCATTCCCAATCTAAGATCGGA-TCGAACCTAGGGTAGCGGCAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACT-GGACCGAGGGTTGCGGCAACAGGATCGGC
* * *
27522382 AGCACACAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTACGGTCGGCTGAGCGC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCT-CGGTCGGCTGAGCGC
*
27522447 CCACACGCTCGTTTCGCT-GGTTGGCTTAG
129 CCGCACGCTCGTTTCG-TGGGTTGGCTTAG
* * * ** * ** *
27522476 GCATACGGAGTTCATT-CCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGCGGA
1 GCATACGGAGTTCATTCCCA-ATCTAAG-AT-CAGACTGGA--CCGAGGGT-TG--C-G-GC--A
* * * * * * * *
27522540 CCGAGGGTTACGGCAGCAGGATCGACAGCACGTAGGGGGGATCGAGACGATCCTCGACTTGCGCA
54 AC-A-GGAT-C-G--GCA-G--C-AC-G--C--AGGGGGGACCGGGCCGATCCCCGGCTTGCACA
* * * * *
27522605 TTTTGTCTCTCCGGCCAGCTGAGCGCCCTCACGCTCGTTTCGTGGGTTGGCTTAG
104 TTCTGCCTCT-CGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** *
27522660 GCATACGGAGTTCATT-CCACGTCTAAGCCCCAG-CTGGACCAAGGGTTGTGGCGGCAAGACCAG
1 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACTGGACCGAGGG-T-T-GCGGC-A-A-CAG
* * * * * * *** *
27522723 GAGCGGGATCAACAGCACACAGAGGGGGACCAGGCTGATCCTCGACTTATGCATTATGCCTCTTC
58 GATC-GG-----CAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTC-TC
* * * * *
27522788 GGTCGACCTTTCCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
115 GGTCG-GC--T-GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * ** *
27522835 GCATACGAAGTTCATCCCCAATCTAAGCAT-ACGAAGTTCATTCCCAGTCTAAGATCGGACCAGA
1 GCATACGGAGTTCATTCCCAATCTAAG-ATCA-G-ACTGGA--CCGAGGGT-TG--CGG--CA-A
* * * * * *
27522899 CCGAAGGTAACGGCAACAGGATCGACAGCACGCAAGGGGGATCGGGCCAATCCTCGACTTGCGCA
55 -C--AGG-ATCGG---CA-G--C-AC-GCA-G---GGGGGACCGGGCCGATCCCCGGCTTGCACA
*
27522964 TTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACG-TCCGTTTCGTGGGTTGGCTTAG
104 TTCTGCCTCT-CGGTCGGCTGAGCGCCCGCACGCT-CGTTTCGTGGGTTGGCTTAG
* * * * ** * *
27523019 GCATAGGGAGTTCATT-CCATGTCTAAGCCTTAG-CTGGACCGAGGGTTATGGCAGCGGGATCGG
1 GCATACGGAGTTCATTCCCA-ATCTAAG-ATCAGACTGGACCGAGGGTTGCGGCAACAGGATCGG
* * * * * * * * *
27523082 TAGCACGCAAGGGGGACCAGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCAGCCGGATGAGCG
64 CAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCT-CGGTCGGCTGAGCG
* *
27523147 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * ***
27523177 GCATA-GCGAGTTCATT-CCATGTCTAAGCTGCAG-CCAGACCGAGGGTTGTGGTAGTGGGATCG
1 GCATACG-GAGTTCATTCCCA-ATCTAAGAT-CAGACTGGACCGAGGGTTGCGGCAACAGGATCG
* * * * * * ** *
27523239 ACAGCACGCAGAGGGGACCGAGCCGATCCCCGACTTGCGCATTATGCCTCTTCAATCGGCTCAGC
63 GCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTC-TCGGTCGGCTGAGC
* * * *
27523304 GCCCACACGCTCGTTTCATGGGTTGACTTAT
127 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * * *
27523335 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGGCAACAGGATCGGCA
* * * * *
27523400 ACACGTAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCGG-CGACTGAGCACCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCGGTCGGCTGAGCGCCC
* * *
27523464 GCATGCTCATTTCGTAGGTTGGCTTAG
131 GCACGCTCGTTTCGTGGGTTGGCTTAG
27523491 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
27523508 TATGTCTAAG
Statistics
Matches: 1054, Mismatches: 210, Indels: 171
0.73 0.15 0.12
Matches are distributed among these distances:
156 50 0.05
157 60 0.06
158 393 0.37
159 130 0.12
160 9 0.01
161 1 0.00
162 8 0.01
163 4 0.00
164 1 0.00
165 1 0.00
166 2 0.00
167 3 0.00
169 2 0.00
170 7 0.01
171 39 0.04
172 4 0.00
173 2 0.00
174 3 0.00
175 58 0.06
176 8 0.01
177 8 0.01
178 6 0.01
179 13 0.01
180 20 0.02
181 3 0.00
182 11 0.01
183 10 0.01
184 153 0.15
185 4 0.00
186 1 0.00
187 1 0.00
188 39 0.04
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGCGGCAACAGGATCGGCA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCGGTCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:27522512 original size:26 final size:26
Alignment explanation
Indices: 27522476--27522528 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27522466 GTTGGCTTAG
27522476 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27522502 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27522528 G
1 G
27522529 ATCAGAGCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27522640 original size:184 final size:184
Alignment explanation
Indices: 27522326--27523046 Score: 534
Period size: 184 Copynumber: 4.0 Consensus size: 184
27522316 AGGCATATGA
* * *
27522326 AGTTCATTCCCAATCTAAGATCGGATCGAACCTAGGGTAGCGGCAGCAGGATCGACAGCACACAG
1 AGTTCATTCCCAATCTAAGATCAGAGCGAACCGAGGGTAGCGGCAGCAGGATCGACAGCACACAG
* * * * *
27522391 GGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTACGGTCGGCTGAGCGCCCACACGCT
66 GGGGGACCGAGACGATCCCCGACTTACGCATTCTGCCTCTACGGCCAGCTGAGCGCCCACACGCT
*
27522456 CGTTTCGCT-GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
131 CGTTTCG-TGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGG
* * **
27522510 AGTTCATTCCCAGTCTAAGATCAGAGCGGACCGAGGGTTA-CGGCAGCAGGATCGACAGCACGTA
1 AGTTCATTCCCAATCTAAGATCAGAGCGAACCGAGGG-TAGCGGCAGCAGGATCGACAGCACACA
* * * * * * *
27522574 GGGGGGATCGAGACGATCCTCGACTTGCGCATTTTGTCTCTCCGGCCAGCTGAGCGCCCTCACGC
65 GGGGGGACCGAGACGATCCCCGACTTACGCATTCTGCCTCTACGGCCAGCTGAGCGCCCACACGC
**
27522639 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGC---CCC
130 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGG
** ** * * * * * *
27522691 AG--C-TGGACCAAGGGT-TG-T--G-GCG--GC-A-AG-ACCAGG-AGCGGGATCAACAGCACA
1 AGTTCAT-TCCCAA-TCTAAGATCAGAGCGAACCGAGGGTAGC-GGCAGCAGGATCGACAGCACA
* * * * * * * * *
27522742 CAGAGGGGGACC-AGGCTGATCCTCGACTTATGCATTATGCCTCTTCGGTCGACCTTTCCAGCAC
63 CAG-GGGGGACCGAGAC-GATCCCCGACTTACGCATTCTGCCTCTACGG-CCAGC--T-GAGCGC
* * * * * * *
27522806 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCA-TCCCCAATCTAAGCATACGA
122 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAC-GTCTAAGCATACGG
* * * * * * *
27522869 AGTTCATTCCCAGTCTAAGATCGGA-CCAGACCGAAGGTAACGGCAACAGGATCGACAGCACGCA
1 AGTTCATTCCCAATCTAAGATCAGAGCGA-ACCGAGGGTAGCGGCAGCAGGATCGACAGCACACA
* * * * * * * * * * * *
27522933 AGGGGGATCGGGCCAATCCTCGACTTGCGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACG-
65 GGGGGGACCGAGACGATCCCCGACTTACGCATTCTGCCTCTACGGCCAGCTGAGCGCCCACACGC
* *
27522997 TCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
130 T-CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGC
27523047 CTTAGCTGGA
Statistics
Matches: 413, Mismatches: 90, Indels: 68
0.72 0.16 0.12
Matches are distributed among these distances:
169 1 0.00
170 21 0.05
171 36 0.09
172 4 0.01
173 1 0.00
174 5 0.01
175 53 0.13
176 1 0.00
178 5 0.01
179 6 0.01
180 6 0.01
181 5 0.01
183 4 0.01
184 201 0.49
185 6 0.01
186 1 0.00
187 1 0.00
188 36 0.09
189 20 0.05
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.22
Consensus pattern (184 bp):
AGTTCATTCCCAATCTAAGATCAGAGCGAACCGAGGGTAGCGGCAGCAGGATCGACAGCACACAG
GGGGGACCGAGACGATCCCCGACTTACGCATTCTGCCTCTACGGCCAGCTGAGCGCCCACACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTCTAAGCATACGG
Found at i:27522865 original size:26 final size:26
Alignment explanation
Indices: 27522835--27522887 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27522825 GTTGACTTAG
27522835 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
27522861 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
27522887 G
1 G
27522888 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:27523540 original size:26 final size:26
Alignment explanation
Indices: 27523491--27523542 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27523481 GTTGGCTTAG
*
27523491 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
27523517 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
27523543 AATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:27524526 original size:159 final size:159
Alignment explanation
Indices: 27524244--27524738 Score: 545
Period size: 158 Copynumber: 3.1 Consensus size: 159
27524234 AAGCATACAT
* * * * *
27524244 AGTTCATTCCCA-GTCTAAGATCGGATCGAACCGAGGGTTGTGGCAGCAGGATCGACGGCACGCA
1 AGTTCATT-CCATGTCTAAGACCAGACCAAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
*
27524308 -AGGGGGACCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCTG-TCGGCTGAGCGCCCGCAC
65 GAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCT-CTGATCGGCTGAGCGCCCGCAC
* *
27524371 GCCCGTTTCATGGGTTGGCTTAGGCATAGGG
129 GCTCGTTTCATGGGTTGGCTTAGGCATACGG
* ** * *
27524402 AGTTCATTCCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGC-GAGACCGGCAGCACGC
1 AGTTCATTCCATGTCTAAG-ACCAGACCAAACCGAGGGTTGTGGCAGCAG-GATCGACAGCACGC
*** * * * * *
27524465 AGAGGGGGACCGAACCGATCCCCGGCTTGCGCATTATGCCTCTCTGACCAGTTGAGCGCCCGTAC
64 AGAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCCGCAC
* * *
27524530 GCTCGTTTCGTGGGTTGACTTAGGCATACGA
129 GCTCGTTTCATGGGTTGGCTTAGGCATACGG
* * * * * * * *
27524561 AGTTCATTCCCA-ATCTAAGATCGGATCAAACCCAGGGTTGTGGTAGCAGGATCGATAGCACACA
1 AGTTCATT-CCATGTCTAAGACCAGACCAAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * *
27524625 G-GGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACG
65 GAGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCCGCACG
* * **
27524689 CTTGTTTCATGGGTTGGCTTAGTCATATAG
130 CTCGTTTCATGGGTTGGCTTAGGCATACGG
27524719 AGTTCATTCCATGTCTAAGA
1 AGTTCATTCCATGTCTAAGA
27524739 ATACGGAGTT
Statistics
Matches: 274, Mismatches: 54, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
157 7 0.03
158 142 0.52
159 121 0.44
160 4 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (159 bp):
AGTTCATTCCATGTCTAAGACCAGACCAAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
AGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGCGCCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATACGG
Found at i:27524950 original size:26 final size:26
Alignment explanation
Indices: 27524921--27524973 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27524911 GTTGACTTAG
27524921 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
27524947 GCATACGGATTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
27524973 G
1 G
27524974 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:27526032 original size:26 final size:26
Alignment explanation
Indices: 27525996--27526045 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
27525986 GACTTAGGCG
*
27525996 TACGAAGTTCATCCCCAGTCTAAGCA
1 TACGAAGTTCATCCCCAATCTAAGCA
* *
27526022 TACGGAGTTCATTCCCAATCTAAG
1 TACGAAGTTCATCCCCAATCTAAG
27526046 ATCAGACCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAATCTAAGCA
Found at i:27526864 original size:26 final size:26
Alignment explanation
Indices: 27526835--27526887 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27526825 GTTGACTTAG
*
27526835 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
27526861 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27526887 G
1 G
27526888 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27527258 original size:159 final size:160
Alignment explanation
Indices: 27526981--27527334 Score: 437
Period size: 159 Copynumber: 2.2 Consensus size: 160
27526971 CGCATGCCCA
* * * * *
27526981 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCTGCAGCCAGACCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATATAAGATGCAGCCAGACCGAGGGT
** * * *
27527045 TGTGGTAGTGGGACGAACAGCACACAGAGGGGGACCGGGCCGATACCCGGCTTGCGCATTATGCC
66 TGCAGTAGTAGGACGAACAGCACACAGAGGGGGACCAGGCCGATACCCGACTTGCGCATTATGCC
* * *
27527110 TCTTCGGTCGGCTCAGCGCCCGCACGCTCG
131 TCTCCGGCCGACTCAGCGCCCGCACGCTCG
* * * * *
27527140 TTTTGTTGGTTGACTTATGCATACGGAGTTCATTCCCA-ATATAAGAT-CAGACCAGACTGAGGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATATAAGATGCAG-CCAGACCGAGGG
* * * *
27527203 TTGCAGTAGTAGGATCG-ATAGCACACAGGGGGGGATCAGGCCGATCCCCGACTTGCGCATTATG
65 TTGCAGTAGTAGGA-CGAACAGCACACAGAGGGGGACCAGGCCGATACCCGACTTGCGCATTATG
* *
27527267 CCTCTCCGGCCGACTGAGTGCCCGCACGCTCG
129 CCTCTCCGGCCGACTCAGCGCCCGCACGCTCG
*
27527299 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
27527335 ATGTCTAAGC
Statistics
Matches: 163, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
158 3 0.02
159 155 0.95
160 5 0.03
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (160 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATATATAAGATGCAGCCAGACCGAGGGT
TGCAGTAGTAGGACGAACAGCACACAGAGGGGGACCAGGCCGATACCCGACTTGCGCATTATGCC
TCTCCGGCCGACTCAGCGCCCGCACGCTCG
Found at i:27528401 original size:26 final size:26
Alignment explanation
Indices: 27528372--27528426 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
27528362 GTTGACTTAG
*
27528372 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
27528398 GCATATAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27528424 GCA
1 GCA
27528427 CATAGGGGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27528431 original size:26 final size:26
Alignment explanation
Indices: 27528379--27528431 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27528369 TAGGCATACG
*
27528379 GAGTTCATCCCCAGTCTAAGCATATA
1 GAGTTCATCCCCAGTCTAAGCACATA
* *
27528405 GAGTTCTTTCCCAGTCTAAGCACATA
1 GAGTTCATCCCCAGTCTAAGCACATA
27528431 G
1 G
27528432 GGGGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GAGTTCATCCCCAGTCTAAGCACATA
Found at i:27529892 original size:158 final size:157
Alignment explanation
Indices: 27529424--27529925 Score: 541
Period size: 158 Copynumber: 3.2 Consensus size: 157
27529414 CCCAGTCTAA
* * *
27529424 GCATACGAAGTTCATTCC-TAGTCTAAGATCA-AACTGGA-TCGAGGGTTGCGGTAGCAGGATCG
1 GCATACGGAGTTAATTCCAT-GTCTAAGATCAGATC-GGACT-GAGGGTTGCGGTAGCAGGATCG
* * * * * *
27529486 ACAGCACGCAGGGGGGAGCGGGTCGATCCCCGGCTTGCGAATTCTGCCTCTCCGGCCGGCTGAGC
63 ACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCTGGTCGGCTGAGT
* * * *
27529551 ACCCGCACACCCATTTCGTGGGTTCGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTT-GCTTAG
* ** * * * * * *
27529582 GCATAGGGAGTTAATTCCATGTCTAAGCCCCAGCT-AGACCGAGGGTTGTGGCAG-TGAGATCGA
1 GCATACGGAGTTAATTCCATGTCTAAG-ATCAGATCGGACTGAGGGTTGCGGTAGCAG-GATCGA
* * * * * *
27529645 CAGCATGCA-GAGGGATCCTCGGTCGATCCCCGACTTACGCATTATGCCTCTCTGGTCGGCTCAG
64 CAGCACGCAGGGGGGA-CC-GGGTCGATCCCCGGCTTGCGCATTATGCCTCTCTGGTCGGCTGAG
27529709 TGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
127 TGCCCGCACGCTCGTTTCGTGGGTTG-CTTAG
*
27529741 GCATACGGAGTTAATTCCCTGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTAATTCCATGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGACA
* * * *
27529806 GCACGTAGGGGGGACCGGG-CTGATCCCCGGCTTGCGCATTATGCCTCTCTGGTAGACTGAATGC
66 GCACGCAGGGGGGACCGGGTC-GATCCCCGGCTTGCGCATTATGCCTCTCTGGTCGGCTGAGTGC
27529870 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTT-GCTTAG
* *
27529899 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTAATTCCATGTCTAAG
27529926 CTTGCGGAGT
Statistics
Matches: 280, Mismatches: 51, Indels: 26
0.78 0.14 0.07
Matches are distributed among these distances:
157 7 0.03
158 146 0.52
159 121 0.43
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTAATTCCATGTCTAAGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCTGGTCGGCTGAGTGCC
CGCACGCTCGTTTCGTGGGTTGCTTAG
Found at i:27530651 original size:26 final size:26
Alignment explanation
Indices: 27530621--27530673 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27530611 GTTGACTTAG
*
27530621 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
27530647 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27530673 G
1 G
27530674 ATGAAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Done.