Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 289 of 402
Found at i:27531500 original size:26 final size:26
Alignment explanation
Indices: 27531463--27531515 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
27531453 GTTGACTTAG
27531463 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
27531489 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
27531515 G
1 G
27531516 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:27531779 original size:158 final size:158
Alignment explanation
Indices: 27531489--27531818 Score: 385
Period size: 158 Copynumber: 2.1 Consensus size: 158
27531479 CCTAGTCTAA
* * * * *
27531489 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGCTTGCGACAGCAAGATCGACA
* ** * * * *
27531554 ACACGTAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGGCTGAGCGCC
66 ACACGCAGAAGGGATCGGGCCGATCCCCGGCTTACACATTCTGCCTCTCCGATCGGCTGAGCACC
* **
27531619 CGCACACTCGTTTTGTGGGTTGGCTTAG
131 CGCACACTCATTTCATGGGTTGGCTTAG
* * * * ** *
27531647 GCATACGGAGTTGATTCCCAGTCTAAGATTAGATCGGACCGAGGCTTGCGGTAGCAAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGCTTGCGACAGCAAGATCGACA
* * *
27531712 GCACGCAGAAGGGA-CTGGGCTGATCCTCGGCTTACACATTCTGCCTCTCC-AGTCGGCTGAGCA
66 ACACGCAGAAGGGATC-GGGCCGATCCCCGGCTTACACATTCTGCCTCTCCGA-TCGGCTGAGCA
*
27531775 CCCGCACGCTCATTTCATGGGTTGGCTTAG
129 CCCGCACACTCATTTCATGGGTTGGCTTAG
*
27531805 GCATGCGGAGTTCA
1 GCATACGGAGTTCA
27531819 ATCCATGTCT
Statistics
Matches: 142, Mismatches: 28, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
157 2 0.01
158 140 0.99
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGCTTGCGACAGCAAGATCGACA
ACACGCAGAAGGGATCGGGCCGATCCCCGGCTTACACATTCTGCCTCTCCGATCGGCTGAGCACC
CGCACACTCATTTCATGGGTTGGCTTAG
Found at i:27531951 original size:26 final size:26
Alignment explanation
Indices: 27531915--27531967 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27531905 GTTGACTTAG
*
27531915 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27531941 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27531967 G
1 G
27531968 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27532234 original size:159 final size:160
Alignment explanation
Indices: 27532016--27532486 Score: 542
Period size: 158 Copynumber: 3.0 Consensus size: 160
27532006 GCATGCAGAG
* * * *
27532016 GGGACCAGGCCGATCTCC-GGCTTGCACATTCTGCCTCTCTGGCTGGCTGAGCGCCCGCACGCTC
1 GGGATCAGGCCGATC-CCTGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTC
*
27532080 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGT
65 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGT
* * *
27532145 TATGGCAGGGGGATCGATAGCACGCAGAG-G
130 TGTGGCAGCGGGATCGATAGCACGCAGAGTA
* * * * *
27532175 GGGATCGGGTCGATCCCTGGCTTGCGCATTATGCCTCTCCGGTTGGCTTAGCACCCGCACGCTCG
1 GGGATCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCG
* * * ** * * *
27532240 TTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGAGGG
66 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGG
* ** * *
27532303 TTGCGGCAGTAGGATCGACAGCA--CATAGTA
129 TTGTGGCAGCGGGATCGATAGCACGCAGAGTA
* * * * *
27532333 GGGATCAGGCCGAT-CCTCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCACATGCCC
1 GGGATCAGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTC
*
27532397 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGT
65 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGT
* * *
27532462 TGTGGTAGCGGGACCGATAACACGC
130 TGTGGCAGCGGGATCGATAGCACGC
27532487 TCATTTTGTG
Statistics
Matches: 252, Mismatches: 51, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
157 10 0.04
158 119 0.47
159 119 0.47
160 4 0.02
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.24
Consensus pattern (160 bp):
GGGATCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
GTGGCAGCGGGATCGATAGCACGCAGAGTA
Found at i:27532416 original size:158 final size:156
Alignment explanation
Indices: 27531941--27532442 Score: 532
Period size: 158 Copynumber: 3.2 Consensus size: 156
27531931 CCCAGTCTAA
* * * *
27531941 GCATACGGAGTTCATTCTCA-GTCTAAGATCGGACCAGACTGAGGTTTGCGACAGCAGGATCAAC
1 GCATACGGAGTTCATTC-CATGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCGAC
* * *
27532005 AGCATGCAGAGGGGACCAGGCCGAT-CTCCGGCTTGCACATTCTGCCTCTCTGG-CTGGCTGAGC
64 AGCA-GCAGAGGGGATCAGGCCGATCCT-CGGCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGC
*
27532068 GCCCGCACGCTCGTTTCATGGGTTGGCTTAG
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * ** ** *
27532099 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTATGGCAGGGGGATCGAT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
27532163 AGCACGCAGAGGGGGATCGGGTCGATCC-CTGGCTTGCGCATTATGCCTCTCCGGTTGGCTTAGC
64 AGCA-GCAGA-GGGGATCAGGCCGATCCTC-GGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* * *
27532227 ACCCGCACGCTCGTTTTGTGGGTTGACTTAG
126 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
27532258 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGAC
* *
27532322 AGCA-CATAGTAGGGATCAGGCCGATCCTCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
64 AGCAGCAGAG--GGGATCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * *
27532386 CCCACATGCCCGTTTCGTGGGTTGGCTTAG
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
27532416 GCATAGGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
27532443 CCCTAGTCGG
Statistics
Matches: 279, Mismatches: 52, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
156 1 0.00
157 8 0.03
158 146 0.52
159 120 0.43
160 4 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACGAGGGTTGCGGCAGCAGGATCGACAG
CAGCAGAGGGGATCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:27532572 original size:92 final size:92
Alignment explanation
Indices: 27532402--27532572 Score: 209
Period size: 92 Copynumber: 1.9 Consensus size: 92
27532392 TGCCCGTTTC
* * * * ** * *
27532402 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGG
1 GTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACCAGACCGAGGGTTGCGG
* *
27532467 TAGCGGGACCGATAACACGCTCATTTT
66 CAGCAGGACCGATAACACGCTCATTTT
*
27532494 GTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCAAACCAGACCGAGGGTTGCG
1 GTGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGACCAAACCAGACCGAGGGTTGCG
* *
27532558 GCAGTAGGATCGATA
65 GCAGCAGGACCGATA
27532573 GTACGCAGGG
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
91 1 0.02
92 64 0.98
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.26
Consensus pattern (92 bp):
GTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAAACCAGACCGAGGGTTGCGG
CAGCAGGACCGATAACACGCTCATTTT
Found at i:27533625 original size:317 final size:315
Alignment explanation
Indices: 27533046--27533861 Score: 936
Period size: 317 Copynumber: 2.6 Consensus size: 315
27533036 CCCAGTCTAA
* ** * * * *
27533046 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTATGGCAGTAGGATAGGCA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACA
* ** * * * * *
27533111 GCATGCA-GGTAGACCGAGCTAATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACC
66 GCACGCAGGGGGGACAGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTC-CGCCGGCTGAGCGCC
* * * * **
27533175 CGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTTTAAGCCCCAGCCGGA
130 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAACCAAA
* * * * * * * *
27533240 CCGAGGGTTGTGGTAGCGGGACAGACAGTACGTAGAGGGGGATCGGGTCGATCCCTGGCTTACGC
195 CCGAGGGTTGTGGCAACGGGACAGACAGCACGCAGAGGGGGATCAGGCCGATCCCCGACTTACGC
* * * * *
27533305 ATTATGCCTTTTCG-GTCGGCTCAGCGCTCGCACGCTCATTTCGTGGGTTGACTTAT
260 ATTATGCCTCTCCGACT-GGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* ** * *
27533361 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACA
* * *
27533426 GCACGCAGGGGGGACAGGGCCAATCCCCAGCTTGAGCATTCTGCCTCTCCAGCCGGTTGAGCGCC
66 GCACGCAGGGGGGACAGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCC-GCCGGCTGAGCGCC
* * * * * * *
27533491 TGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTGCATGTCTACGCCCTAATCAA
130 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAAGCCCCAACCAA
* * *
27533556 ATCGAGGGTTGTGGCAACGGGACCGACAGCACGCAGAGGGGGA-CTAGGCCGATCCCCGACTTGC
194 ACCGAGGGTTGTGGCAACGGGACAGACAGCACGCAGAGGGGGATC-AGGCCGATCCCCGACTTAC
* *
27533620 GCATTATGCCTCTCCGACTGGTTCAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAG
258 GCATTATGCCTCTCCGACTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * *
27533678 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGTAGGATCGATA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACA
*** * * **
27533743 GCACGCAGGGGGGATTTGGTCAATCCCCGGCTTGCGTATTCTGCCTCTCCGACCAACTGAGCGCC
66 GCACGCAGGGGGGACAGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCG-CCGGCTGAGCGCC
* * *
27533808 CACACGCTCGTTTCCTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATA-GGAGTTCATTCCATGTCTAA
27533862 ACATACGGAG
Statistics
Matches: 413, Mismatches: 82, Indels: 10
0.82 0.16 0.02
Matches are distributed among these distances:
315 59 0.14
316 76 0.18
317 277 0.67
318 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (315 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGTAGGATCGACA
GCACGCAGGGGGGACAGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGCCGGCTGAGCGCCC
GCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGAGTTCATTCCATGTCTAAGCCCCAACCAAAC
CGAGGGTTGTGGCAACGGGACAGACAGCACGCAGAGGGGGATCAGGCCGATCCCCGACTTACGCA
TTATGCCTCTCCGACTGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:27533662 original size:159 final size:157
Alignment explanation
Indices: 27533131--27533861 Score: 544
Period size: 158 Copynumber: 4.6 Consensus size: 157
27533121 AGACCGAGCT
* * * * * * * *
27533131 AATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCACCCGCACGC-CTGTTTCGTGGGT
1 AATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGTACGCTC-ATTTCATGGGT
* * ** * * * *
27533195 TGGCTTAGGCATA-GGAGTTCATTCCATGTTTAAGCCCCAG-CCGGACCGAGGGTTGTGGTAGCG
65 TGGCTTAGGCATACGGAGTTCATT-CATGTCTAAG-ACCAGACCAAATCGAGGGTTGTGGCAACA
* * * * *
27533258 GGACAGACAGTACGTAGAGGGGGA-TCGGGTC
128 GGACCGACAGCACGCAG-GGGGGACT-AGGCC
* * * * * * * ** * * * * *
27533289 GATCCCTGGCTTACGCATTATGCCTTTTCGGTCGGCTCAGCGCTCGCACGCTCATTTCGTGGGTT
1 AATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGTACGCTCATTTCATGGGTT
* * * * * * * ** * *
27533354 GACTTATGCATACAGAGTTCATTCCCA-ATCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAG
66 GGCTTAGGCATACGGAGTTCATT--CATGTCTAAGACCAGACCAAATCGAGGGTTGTGGCAACAG
*
27533418 GATCGACAGCACGCAGGGGGGAC-AGGGCC
129 GACCGACAGCACGCAGGGGGGACTA-GGCC
* * *
27533447 AATCCCC-AGCTTGAGCATTCTGCCTCTCC-AGCCGGTTGAGCGCCTGTACGCCCATTTCATGGG
1 AATCCCCGA-CTTGCGCATTCTGCCTCTCCGA-CCGGTTGAGCGCCCGTACGCTCATTTCATGGG
* * * *
27533510 TTGGCTTAGGCATAGGGAGTTCATTGCATGTCTACGCCCTA-ATCAAATCGAGGGTTGTGGCAAC
64 TTGGCTTAGGCATACGGAGTTCATT-CATGTCTAAGACC-AGACCAAATCGAGGGTTGTGGCAAC
*
27533574 GGGACCGACAGCACGCAGAGGGGGACTAGGCC
127 AGGACCGACAGCACGCAG-GGGGGACTAGGCC
* * * * *
27533606 GATCCCCGACTTGCGCATTATGCCTCTCCGACTGGTTCAGCGCCCGTACGCTCATTTCGTGGGTT
1 AATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGTACGCTCATTTCATGGGTT
* * * * **
27533671 GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGTAGG
66 GGCTTAGGCATACGGAGTTCATTCAT-GTCTAAGACCAGACCAAATCGAGGGTTGTGGCAACAGG
* * * * *
27533736 ATCGATAGCACGCAGGGGGGATTTGGTC
130 ACCGACAGCACGCAGGGGGGACTAGGCC
* * *** ** * *
27533764 AATCCCCGGCTTGCGTATTCTGCCTCTCCGACCAACTGAGCGCCCACACGCTCGTTTCCTGGGTT
1 AATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGTACGCTCATTTCATGGGTT
27533829 GGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 GGCTTAGGCATACGGAGTTCATT-CATGTCTAA
27533862 ACATACGGAG
Statistics
Matches: 453, Mismatches: 103, Indels: 34
0.77 0.17 0.06
Matches are distributed among these distances:
157 2 0.00
158 269 0.59
159 176 0.39
160 6 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
AATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGTACGCTCATTTCATGGGTT
GGCTTAGGCATACGGAGTTCATTCATGTCTAAGACCAGACCAAATCGAGGGTTGTGGCAACAGGA
CCGACAGCACGCAGGGGGGACTAGGCC
Found at i:27533873 original size:26 final size:26
Alignment explanation
Indices: 27533837--27533887 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27533827 TTGGCTTAGG
27533837 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
27533863 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
27533888 GATAGGACCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:27534239 original size:26 final size:26
Alignment explanation
Indices: 27534203--27534255 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27534193 GTTGACTTAG
*
27534203 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27534229 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27534255 G
1 G
27534256 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27539803 original size:26 final size:26
Alignment explanation
Indices: 27539773--27539825 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27539763 GTTGACTTAG
*
27539773 GCATACGAAGTTCGTCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
27539799 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27539825 G
1 G
27539826 ATCAAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27540304 original size:26 final size:26
Alignment explanation
Indices: 27540275--27540327 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27540265 GTTGGCTTAG
* *
27540275 GCATATGGAGTTCGTT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27540301 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27540327 G
1 G
27540328 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27540683 original size:26 final size:26
Alignment explanation
Indices: 27540654--27540706 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27540644 GTTGACTTAG
27540654 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
27540680 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
27540706 G
1 G
27540707 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:27543578 original size:881 final size:881
Alignment explanation
Indices: 27541948--27543674 Score: 2739
Period size: 881 Copynumber: 2.0 Consensus size: 881
27541938 AGCGGGACAG
* * *
27541948 GCAGCACGAAGAGGGGGGCCGGGTCGATCCACGGCTTGCGCATTATGCCTCTTCAGTCAGCTCAG
1 GCAGCACGAAGAGGGGGACCAGGCCGATCCACGGCTTGCGCATTATGCCTCTTCAGTCAGCTCAG
27542013 CGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCGAAGCATACG
66 CGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCGAAGCATACG
* * *
27542078 GAGTTCATTCCCAGTCTATTATTTTGAGCCACGGGGCACATGCTGGGCTTGGGCATGTGCTGGTG
131 GAGTTCATTCCCAGTCTAATATTTTGAGCCACGAGGCACATGCTGGGCTCGGGCATGTGCTGGTG
* *
27542143 CCGCATTTTTTTCGCCCGGGGCACCATCGCTGGAGCATCGCCGGAGAGCCTAACCAGCAGCATTG
196 CCGCATTTTTTTCACCCGGGGCACCATCGCTGGAGCATCGCCGGAGACCCTAACCAGCAGCATTG
* * ** *
27542208 GGGGTTCCGGTGCTTGGGGGGGCCGGGGGTGTGGGCACATGATGTGTGATGGCTGTTGGTACTTG
261 GGGGTTCCGGTGATTGGGGGGGCCGGGGGTGTGGGCACATCATGTGCAATGGCTGCTGGTACTTG
* * *
27542273 GCCCTTATATTGGCCCCCTATCCCTCATCAAACTTTGAGAACTCACACCCCTTTAAAGAGCATCT
326 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCTTTAAAGAGCATCT
*
27542338 GAGATTTTATAGGTTTGCTGCCATTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAC
391 GAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAC
*
27542403 GGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCAAAAAAAAATAC
456 GGTCACAAAATCTTCTCCACTTCGAGTTTTTAACTGAATTTTTTTATGCATGCAAAAAAAAATAC
* * * ** *
27542468 AAGGGTCATCTCTACCATATTTGGGGACAAATTTCTTTCTAAAAAAATTTTAAAAAATCCCAAAT
521 AAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCAAAC
* *
27542533 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGGGTCATCTTGCCACGAAACTTCACATGA
586 CGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGGGTCATCTTGCCACGAAACTTCACATGA
* *
27542598 AGGCATAGGGGACCATTGTATGAATTTACACACCATAAATATGGCATTGGCATGGCAGAAATATG
651 AGGCATAGGGGACCATTGTATGAATTTACACACCATAAAAATGGCATTGGCATGGCAAAAATATG
* * *
27542663 AAGATGTGCTTGAACCCACCTACCACCCGTTCGATCTCTAG-CTTGCGCATCCTGCCCCTCTGGT
716 AAGATGTGCTTGAACCCAACTACCACCCGTTCGATC-CCAGCCTTGCGCATCCGGCCCCTCTGGT
* * * * *
27542727 CGGCTTAGCG-CTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGGTCT
780 CGGCTGAGCGTC-CGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
27542791 AAGATTGAACTGGACTGAGGGTTGCAGTAGCAGGATCA
844 AAGATTGAACTGGACTGAGGGTTGCAGTAGCAGGATCA
* *
27542829 GCAGCAC-ACAGAGGGGGACCAGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCAGTCGGCTCA
1 GCAGCACGA-AGAGGGGGACCAGGCCGATCCACGGCTTGCGCATTATGCCTCTTCAGTCAGCTCA
* *
27542893 GCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCGAAGCATAC
65 GCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCGAAGCATAC
*
27542958 GGAGTTCATTCCCAGTCTAATATTTTGAGCCACGATGCACATGCTGGGCTCGGGCATGTGCTGGT
130 GGAGTTCATTCCCAGTCTAATATTTTGAGCCACGAGGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * **
27543023 GCCGCATTTTTTTCACCCGGGGCACCATCGTTGGAGCATCGTCGGAGACCCTAACCGGTGGCATT
195 GCCGCATTTTTTTCACCCGGGGCACCATCGCTGGAGCATCGCCGGAGACCCTAACCAGCAGCATT
* * * *
27543088 GGGGGTTCCGGTGATT-GGGGGGCTGGAGGG-GTGTGCTTAGATCATGTGCAATGGTTGCTGGTA
260 GGGGGTTCCGGTGATTGGGGGGGCCGG-GGGTGTGGGC--ACATCATGTGCAATGGCTGCTGGTA
27543151 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACACCC-TTAAAGAG
322 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACAC-CCCTTTAAAGAG
*
27543215 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
386 CATCTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
27543280 CAAACGGTGACAAAATCTTCTCCACTTCGAGTTTTTAACTGAATTTTTTTTTGCATGCCAACAAA
451 CAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAACTGAATTTTTTTATGCATGCAAAAAAA
*
27543345 AATACAAGGATCACCTCTACCAAATTTGGGGACAAAACT-TTTCTAAAAAAATTTTAAAAAATCT
516 AATACAAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCC
** * * *
27543409 TGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGGGTCGTCTTGCCATGAAACTTCA
581 CAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGGGTCATCTTGCCACGAAACTTCA
**
27543474 CATGAAGGCATAGGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGGCAAAA
646 CATGAAGGCATAGGGGACCATTGTATGAATTTACACACCATAAAAATGGCATTGGCATGGCAAAA
* * *
27543539 ATATGAAGATGTGCTTGAACCCAACTACCACCTGTTCGATCCCCGCCTTGCGCATCCGGCCTCTC
711 ATATGAAGATGTGCTTGAACCCAACTACCACCCGTTCGATCCCAGCCTTGCGCATCCGGCCCCTC
*
27543604 TGGTCGGCTGAGCGTCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAG
776 TGGTCGGCTGAGCGTCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAG
27543669 TCTAAG
841 TCTAAG
27543675 CATACGGAGT
Statistics
Matches: 772, Mismatches: 67, Indels: 14
0.91 0.08 0.02
Matches are distributed among these distances:
880 17 0.02
881 518 0.67
882 234 0.30
883 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (881 bp):
GCAGCACGAAGAGGGGGACCAGGCCGATCCACGGCTTGCGCATTATGCCTCTTCAGTCAGCTCAG
CGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCGAAGCATACG
GAGTTCATTCCCAGTCTAATATTTTGAGCCACGAGGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCGCATTTTTTTCACCCGGGGCACCATCGCTGGAGCATCGCCGGAGACCCTAACCAGCAGCATTG
GGGGTTCCGGTGATTGGGGGGGCCGGGGGTGTGGGCACATCATGTGCAATGGCTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCTTTAAAGAGCATCT
GAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAC
GGTCACAAAATCTTCTCCACTTCGAGTTTTTAACTGAATTTTTTTATGCATGCAAAAAAAAATAC
AAGGATCACCTCTACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCAAAC
CGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGGGTCATCTTGCCACGAAACTTCACATGA
AGGCATAGGGGACCATTGTATGAATTTACACACCATAAAAATGGCATTGGCATGGCAAAAATATG
AAGATGTGCTTGAACCCAACTACCACCCGTTCGATCCCAGCCTTGCGCATCCGGCCCCTCTGGTC
GGCTGAGCGTCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
GATTGAACTGGACTGAGGGTTGCAGTAGCAGGATCA
Found at i:27543678 original size:26 final size:26
Alignment explanation
Indices: 27543648--27543700 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27543638 GTTGACTTAG
*
27543648 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27543674 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27543700 G
1 G
27543701 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27544158 original size:157 final size:156
Alignment explanation
Indices: 27543674--27544479 Score: 678
Period size: 157 Copynumber: 5.1 Consensus size: 156
27543664 CCCAGTCTAA
* * * **
27543674 GCATACGGAGTTCATTCCCTGTCTAAGATCGGATCGGACCGAAGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
27543739 GCACGCA-GGGGGACCGAGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGGCCAGTTGAGCGCC
66 GCACGCAGGGGGGACCG-GCCGATCCTCAGCTTGCAGATTCTGCCTCT-CGGCCGGTTGAGCGCC
* *
27543803 CACACGCACATTTCGTGGGTTGGCTTAG
129 CGCACGCTCATTTCGTGGGTTGGCTTAG
* ** * ** *
27543831 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACAGAGGGTTGTGGCAGTGGGACCCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGTGGCAGCAGGA-TCG
* * * * * * * *
27543894 -CAGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGC-GCATTATGCCTCTCTGGCTGGCTCA
63 ACAGCACGCAG-GGGGGACC-GGCCGATCCTCAGCTTGCAG-ATTCTGCCTCTC-GGCCGGTTGA
* * ** *
27543957 GTGCCCGAACGCTCATTTTATGGGTTGACTTAG
124 GCGCCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * *
27543990 GCATACTGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * *
27544055 GCATGCAGGGGGGACTAGGCCGGTCCTCAACTTACAGATTCTGCCTCTCGGCCGGTTGAGCACCT
66 GCACGCAGGGGGGAC-CGGCCGATCCTCAGCTTGCAGATTCTGCCTCTCGGCCGGTTGAGCGCCC
*
27544120 GCACGCTCGTTTCGTGGGTTGGCTTAG
130 GCACGCTCATTTCGTGGGTTGGCTTAG
* ** * * * *
27544147 GCATAGGGAGTTCATT-CCATGTCTAAGCCCAG-CCGGACTGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
27544210 AGCACACAGAGGGGGACCGGATCGATCCTC-GCTTGCACATTATGCCTCTCCGGCCGGCTCAGCG
65 AGCACGCAG-GGGGGACCGG-CCGATCCTCAGCTTGCAGATTCTGCCTCT-CGGCCGGTTGAGCG
* *
27544274 CCCGAACGCTCATTTCGTGGGTTGACTTAG
127 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * * * *
27544304 GCATACAGAGTTCATTCCCAATCTAAGATC-GAATCAGATCGAGGGTTGCGGCAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
27544368 AGGATGCAGGGGGGACCGGGCTGGTCCTCAGCTTAC-GCATTCTACCTCTTTGGCCGGTTGAGCG
65 AGCACGCAGGGGGGACC-GGCCGATCCTCAGCTTGCAG-ATTCTGCCTC-TCGGCCGGTTGAGCG
* * * *
27544432 CCCACACGCTCGTTTCATGGGATGGCTTAG
127 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
27544462 GCATACGAAGTTTATTCC
1 GCATACGGAGTTCATTCC
27544480 ATGTGTAAGC
Statistics
Matches: 505, Mismatches: 120, Indels: 47
0.75 0.18 0.07
Matches are distributed among these distances:
156 56 0.11
157 192 0.38
158 137 0.27
159 116 0.23
160 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGCCGATCCTCAGCTTGCAGATTCTGCCTCTCGGCCGGTTGAGCGCCCG
CACGCTCATTTCGTGGGTTGGCTTAG
Found at i:27544349 original size:314 final size:314
Alignment explanation
Indices: 27543674--27544489 Score: 1066
Period size: 314 Copynumber: 2.6 Consensus size: 314
27543664 CCCAGTCTAA
* * * * * *
27543674 GCATACGGAGTTCATTCCCTGTCTAAGATCGGATCGGACCGAAGGTTACGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * ** * * * * *
27543739 GCACGCA-GGGGGACCGAGCCAATCCCCGGCTTGCACATTCTGCCTCTCCGGCCAGTTGAGCGCC
66 GCATGCAGGGGGGACAG-GCCGGTCCTCAGCTTACAGATTCTGCCTCT-CGGCCGGTTGAGCGCC
* * *
27543803 CACACGCACATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
129 CACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAGCCGG
* * *
27543868 ACAGAGGGTTGTGGCAGTGGGACCCGCAGCACACAGAGGGGGACCGGGTCGATCCCCGGCTTGCG
193 ACAGAGGGTTGTGGCAGCGGGACCCGCAGCACACAGAGGGGGACCGGATCGATCCCCGGCTTGCA
* * * *
27543933 CATTATGCCTCTCTGGCTGGCTCAGTGCCCGAACGCTCATTTTATGGGTTGACTTAG
258 CATTATGCCTCTCCGGCCGGCTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAG
* * * *
27543990 GCATACTGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGAGGGTTGTGACAGCAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGA-ATCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* *
27544054 AGCATGCAGGGGGGACTAGGCCGGTCCTCAACTTACAGATTCTGCCTCTCGGCCGGTTGAGCACC
65 AGCATGCAGGGGGGAC-AGGCCGGTCCTCAGCTTACAGATTCTGCCTCTCGGCCGGTTGAGCGCC
**
27544119 TGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGGA
129 CACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGGA
* *
27544184 CTGAGGGTTGTGGCAGCGGGA-CCGACAGCACACAGAGGGGGACCGGATCGATCCTC-GCTTGCA
194 CAGAGGGTTGTGGCAGCGGGACCCG-CAGCACACAGAGGGGGACCGGATCGATCCCCGGCTTGCA
*
27544247 CATTATGCCTCTCCGGCCGGCTCAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAG
258 CATTATGCCTCTCCGGCCGGCTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAG
* * *
27544304 GCATACAGAGTTCATTCCCAATCTAAGATCGAATCAGATCGAGGGTTGCGGCAGTAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * *
27544369 GGATGCAGGGGGGACCGGGCTGGTCCTCAGCTTAC-GCATTCTACCTCTTTGGCCGGTTGAGCGC
66 GCATGCAGGGGGGA-CAGGCCGGTCCTCAGCTTACAG-ATTCTGCCTC-TCGGCCGGTTGAGCGC
* * * * * *
27544433 CCACACGCTCGTTTCATGGGATGGCTTAGGCATACGAAGTTTATTCCATGTGTAAGC
128 CCACACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
27544490 ATACGAAGTT
Statistics
Matches: 435, Mismatches: 57, Indels: 17
0.85 0.11 0.03
Matches are distributed among these distances:
313 1 0.00
314 155 0.36
315 122 0.28
316 126 0.29
317 30 0.07
318 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (314 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCATGCAGGGGGGACAGGCCGGTCCTCAGCTTACAGATTCTGCCTCTCGGCCGGTTGAGCGCCCA
CACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCCGGACA
GAGGGTTGTGGCAGCGGGACCCGCAGCACACAGAGGGGGACCGGATCGATCCCCGGCTTGCACAT
TATGCCTCTCCGGCCGGCTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAG
Found at i:27544514 original size:26 final size:26
Alignment explanation
Indices: 27544462--27544514 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27544452 GATGGCTTAG
* *
27544462 GCATACGAAGTTTATTCCATGTGTAA
1 GCATACGAAGTTCATTCCATGTCTAA
27544488 GCATACGAAGTTCATTCTCA-GTCTAA
1 GCATACGAAGTTCATTC-CATGTCTAA
27544514 G
1 G
27544515 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:27544858 original size:25 final size:26
Alignment explanation
Indices: 27544809--27544860 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
27544799 GGTTGCTTAG
*
27544809 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATCTCTAA
27544835 GCATAC-GAGTTCATTTCCA-CTCTAA
1 GCATACGGAGTTCA-TTCCATCTCTAA
27544860 G
1 G
27544861 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATCTCTAA
Found at i:27545531 original size:26 final size:26
Alignment explanation
Indices: 27545501--27545553 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27545491 GTTGACCTAG
27545501 GCATACAAAGTTCA-TCCCTAGTCTAA
1 GCATACAAAGTTCATTCCC-AGTCTAA
*
27545527 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
27545553 G
1 G
27545554 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:27545868 original size:159 final size:158
Alignment explanation
Indices: 27545535--27545923 Score: 399
Period size: 159 Copynumber: 2.5 Consensus size: 158
27545525 AAGCATACAG
* * * * *
27545535 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGTAGGATCGGCAGCACGTAG
1 AGTTCATTCCCAGTCTAAGACCAGACCAGACCAAGGGTTGCGGCAGCAGGACCGACAGCACGCAG
* * * * * * * * *
27545600 GGGGGACTGGGTAGATCTCCGGCTTGTGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACGCC
66 GGGGGACTGGGCAGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCACCCGCACGCC
* *
27545665 CATTTCATGGGTTGGCTTAGGCATAGGG
131 CATTTCATGGGTTGACTTAGGCATAGGA
* * * * * *
27545693 AGTTCATT-GCATGTCTAAGCCCCAG-CTAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGC
1 AGTTCATTCCCA-GTCTAAG-ACCAGACCAGACCAAGGGTTGCGGCAGCAGGACCGACAGCACGC
*
27545756 AGAGGGGGA-TCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCACCCGCA
64 AG-GGGGGACT-GGGCAGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCACCCGCA
* * *
27545820 CGCTCATTTCGTGGGTTGACTTAGGCATATGA
127 CGCCCATTTCATGGGTTGACTTAGGCATAGGA
* * * * * * * *
27545852 AGTTCATTCCCAGTCTAAGA-AAGGACCAGATCGAGGGTTGCGACAGTAGGATCGATAGCACGTA
1 AGTTCATTCCCAGTCTAAGACCA-GACCAGACCAAGGGTTGCGGCAGCAGGACCGACAGCACGCA
27545916 GGGGGGAC
65 GGGGGGAC
27545924 CAGGTTGGTC
Statistics
Matches: 185, Mismatches: 38, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
157 3 0.02
158 55 0.30
159 125 0.68
160 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.32, T:0.21
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGACCAGACCAGACCAAGGGTTGCGGCAGCAGGACCGACAGCACGCAG
GGGGGACTGGGCAGATCCCCGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCACCCGCACGCC
CATTTCATGGGTTGACTTAGGCATAGGA
Found at i:27546548 original size:26 final size:26
Alignment explanation
Indices: 27546519--27546571 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27546509 GTTGACTTAG
27546519 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
27546545 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
27546571 G
1 G
27546572 ATCAAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:27547043 original size:158 final size:159
Alignment explanation
Indices: 27546665--27547046 Score: 382
Period size: 158 Copynumber: 2.4 Consensus size: 159
27546655 TTTCGATCGA
* *
27546665 CTGAGCACCCGTACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
1 CTGAGCACCCGAACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * * *
27546729 CCCCAGCCAGACTGAGGGTTGTGGCAGCGAGACTGACAGCACGCAGAGTGGGATAGGGCCGATCC
65 CACCAGCCAGACTGAGGGTTGTGACAGCGAGACTGACACCACACAGAGGGGGATAGGGCCGATCC
* * * *
27546794 CCGGCTTGCACGTTATGCCTCTCCGGTCGG
130 CCAGCTTGCACATTATACCTCTCCGGCCGG
* * * * * *
27546824 CTCAGCGCCTGAACGCTCATTTCATGGGTT-ACTTAGGCATACGGAGTTCATTCCCA-ATCTAAG
1 CTGAGCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
* * * * * * ** *
27546887 -ATCAGATCGGA-TCGAGGGTTGTGATAGC-AGGATTGACACCACACAG-GGGGGATCGGGTTGG
65 CACCAG-CCAGACT-GAGGGTTGTGACAGCGA-GACTGACACCACACAGAGGGGGATAGGGCCGA
** * *
27546948 TCCCCAGCTTGTGCATTCTACCTCTTCGGCCGG
127 TCCCCAGCTTGCACATTATACCTCTCCGGCCGG
* *
27546981 CTGAGCACCCGCACGCTCGTTTCATAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CTGAGCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
27547046 A
66 A
27547047 TACGGAGTTC
Statistics
Matches: 177, Mismatches: 38, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
157 67 0.38
158 82 0.46
159 27 0.15
160 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
CTGAGCACCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ACCAGCCAGACTGAGGGTTGTGACAGCGAGACTGACACCACACAGAGGGGGATAGGGCCGATCCC
CAGCTTGCACATTATACCTCTCCGGCCGG
Found at i:27547048 original size:26 final size:26
Alignment explanation
Indices: 27547018--27547070 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27547008 GTTGGCTTAG
*
27547018 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
27547044 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
27547070 G
1 G
27547071 AGTAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:27548163 original size:26 final size:26
Alignment explanation
Indices: 27548134--27548186 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27548124 GTTGACTTAG
27548134 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
27548160 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
27548186 G
1 G
27548187 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:27548355 original size:26 final size:26
Alignment explanation
Indices: 27548319--27548371 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27548309 GTTGGCTTTG
27548319 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
27548345 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27548371 G
1 G
27548372 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27548753 original size:26 final size:26
Alignment explanation
Indices: 27548700--27548757 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
27548690 CGTGGGTTGA
*
27548700 CTAAGGCATACGGAGTTCATCTCTAGT
1 CTAA-GCATACGGAGTTCATCTCCAGT
27548727 CTAAGCATACGGAGTTCAT-TCCCAGT
1 CTAAGCATACGGAGTTCATCT-CCAGT
27548753 CTAAG
1 CTAAG
27548758 ATCAGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 1 0.03
26 24 0.83
27 4 0.14
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATCTCCAGT
Found at i:27549254 original size:26 final size:26
Alignment explanation
Indices: 27549204--27549256 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27549194 GTTAGCTTAG
* *
27549204 GCATATGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
27549230 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
27549256 G
1 G
27549257 ATCAGAGCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:27550869 original size:26 final size:26
Alignment explanation
Indices: 27550840--27550892 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27550830 GTTGACTTAG
27550840 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27550866 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27550892 G
1 G
27550893 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27551951 original size:26 final size:26
Alignment explanation
Indices: 27551903--27551955 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27551893 CTTGACTTAG
*
27551903 GCATACAGAGTTCATCTCTAGTCTAA
1 GCATACAGAGTTCATCTCAAGTCTAA
27551929 GCATACAGAGTTCAT-TCCAAGTCTAA
1 GCATACAGAGTTCATCT-CAAGTCTAA
27551955 G
1 G
27551956 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCTCAAGTCTAA
Found at i:27552122 original size:26 final size:26
Alignment explanation
Indices: 27552086--27552138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27552076 GCTGGCTTAG
**
27552086 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27552112 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27552138 G
1 G
27552139 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27552309 original size:26 final size:26
Alignment explanation
Indices: 27552280--27552332 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27552270 GTTGACTTAG
*
27552280 GCATACGCAGTTCATCCCCAGTCTAA
1 GCATACGCAGTTCATCCCAAGTCTAA
* *
27552306 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGCAGTTCATCCCAAGTCTAA
27552332 G
1 G
27552333 ATCAAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGCAGTTCATCCCAAGTCTAA
Found at i:27552331 original size:194 final size:195
Alignment explanation
Indices: 27551984--27552336 Score: 512
Period size: 195 Copynumber: 1.8 Consensus size: 195
27551974 TTGCGGCAGA
* *
27551984 AGGATCGGTAGCACGCAAGGGGGACCAGGCCGATCCCCGGTTACGCATTCTACCTCTCCGGCCGG
1 AGGATAGGCAGCACGCAAGGGGGACCAGGCCGATCCCCGGTTACGCATTCTACCTCTCCGGCCGG
** * * * * **
27552049 CTGAGCGCCCGTGCGCTCGTTTCGTGGGCTGGCTTAGGCATACGGAGTTCATTCCGTGTCTAAGC
66 CTGAGCGCCCGCACGCTCGTTGCGTGGGCTGACTTAGGCATACGCAGTTCATCCCCAGTCTAAGC
*
27552114 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTAGCGGTAGCAGGACCAGCCGC
131 ATACGGAGTTCATTCCAAGTCTAAGATCAGATCAGATCGAGGGTAGCGGTAGCAGGACCAGCCGC
* * * * * *
27552179 AGGATAGGCAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCTCA-TCTGCCTCTCCGGCCG
1 AGGATAGGCAGCACGCAAGGGGGACCAGGCCGATCCCCGG-TTACGCATTCTACCTCTCCGGCCG
* *
27552243 GCTGAGCGCCCGCACGCTTGTTGCG-GGGTTGACTTAGGCATACGCAGTTCATCCCCAGTCTAAG
65 GCTGAGCGCCCGCACGCTCGTTGCGTGGGCTGACTTAGGCATACGCAGTTCATCCCCAGTCTAAG
27552307 CATACGGAGTTCATTCCAAGTCTAAGATCA
130 CATACGGAGTTCATTCCAAGTCTAAGATCA
27552337 AATTGGATTG
Statistics
Matches: 138, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
194 62 0.45
195 71 0.51
196 5 0.04
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (195 bp):
AGGATAGGCAGCACGCAAGGGGGACCAGGCCGATCCCCGGTTACGCATTCTACCTCTCCGGCCGG
CTGAGCGCCCGCACGCTCGTTGCGTGGGCTGACTTAGGCATACGCAGTTCATCCCCAGTCTAAGC
ATACGGAGTTCATTCCAAGTCTAAGATCAGATCAGATCGAGGGTAGCGGTAGCAGGACCAGCCGC
Found at i:27552658 original size:26 final size:25
Alignment explanation
Indices: 27552622--27552673 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
27552612 GTTGGCTTAG
27552622 GCATACGGAGTTCAGTCCATGTCTAA
1 GCATACGGAGTTCAGTCCA-GTCTAA
*
27552648 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCAGTCCAGTCTAA
27552673 G
1 G
27552674 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCAGTCCAGTCTAA
Found at i:27553374 original size:26 final size:26
Alignment explanation
Indices: 27553345--27553397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27553335 GTTGACTTAG
27553345 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27553371 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27553397 G
1 G
27553398 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27553755 original size:159 final size:158
Alignment explanation
Indices: 27553378--27553757 Score: 362
Period size: 159 Copynumber: 2.4 Consensus size: 158
27553368 TAAGCATATG
* * * *
27553378 GAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCAAGGGTTGTAGCAGCAGGATCGACAGCACCT
1 GAGTTCATTCCCAATCTAAGATCGGACT-GGACCGAGGGTTGTAGCAGTAGGATCGACAGCACGT
* * * * * *
27553442 AGGGGGGACTGGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGACTGACTGACCTCCCGCACG
65 AGGGAGGACTGGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGACAGACTCACATCCCACACG
* * **
27553507 CCCGTTTCATTGGTTGGCTTAGGCATAGG
130 CCCGTTTCATGGGTTGACTTAGGCATACA
* * ** * * * *
27553536 GAGTTAATT--CAATGTCTAAG-CCCCAGCCGGACCGAGGGTTGTGGCAGTGGGA-CCAGCAGCA
1 GAGTTCATTCCCAA--TCTAAGATCGGA-CTGGACCGAGGGTTGTAGCAGTAGGATCGA-CAGCA
* * *
27553597 CGTAGAGGAGGACTGGGTCGAT-CCTCGGCTTGCGCATTATGCCTCTCCGGTCAG-CTCA-ATGC
62 CGTAG-GGAGGACTGGGCCGATCCCT-GACTTGCGCATTATGCCTCTCC-GACAGACTCACAT-C
* * *
27553659 CCACACGCTCGTTTCGTGGGTTGACTTTGGCATACA
123 CCACACGCCCGTTTCATGGGTTGACTTAGGCATACA
*
27553695 GAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGCAGCAGTAGGATCGACAGCACG
1 GAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGTAGCAGTAGGATCGACAGCACG
27553758 CAGGAGGGAT
Statistics
Matches: 172, Mismatches: 37, Indels: 25
0.74 0.16 0.11
Matches are distributed among these distances:
156 2 0.01
157 4 0.02
158 47 0.27
159 109 0.63
160 7 0.04
161 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGTAGCAGTAGGATCGACAGCACGTA
GGGAGGACTGGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGACAGACTCACATCCCACACGC
CCGTTTCATGGGTTGACTTAGGCATACA
Found at i:27553883 original size:26 final size:26
Alignment explanation
Indices: 27553846--27553898 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27553836 GTTGGCTTAG
27553846 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
* *
27553872 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
27553898 G
1 G
27553899 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:27555371 original size:26 final size:26
Alignment explanation
Indices: 27555335--27555385 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27555325 CTGGCTTAGG
27555335 CATACGGAGTTCATT-CCATGTCTAAA
1 CATACGGAGTTCATTCCCA-GTCTAAA
*
27555361 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
27555386 GATCAGACCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:27555731 original size:26 final size:26
Alignment explanation
Indices: 27555701--27555753 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27555691 GTTGACTTAG
27555701 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
27555727 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27555753 G
1 G
27555754 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27556027 original size:158 final size:157
Alignment explanation
Indices: 27555865--27556227 Score: 381
Period size: 158 Copynumber: 2.3 Consensus size: 157
27555855 CCCGCACTCC
* * *
27555865 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTAATTCCATTCTAAGCCCCAA-TCGGACCGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCATTCTAAGACCCAACT-GGACCGAGGG
* * * * **
27555929 TTGTGGCAGCGGGACC-AGTAGCACGCAGAGAAGGATCGGGCC-GATCCTCGGCTTGCGCATTAT
65 TTGCGGCAGCAGGACCGA-CAGCACGCAG-GAAGGATCGGGCCAG-TCCCCAACTTGCGCATTAT
* *
27555992 GCCTCTCCGACCAGCTCAATGCCCACCCGCT
127 GCCTCTCCGACCAGCTCAACGCCCACACGCT
* * * * * *
27556023 CGTTTCGTGGGTTGACTTTGGCATACGGCGTTCATTCCCATTCTAAGATCGAACTGGACCGAGGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTAATT-CCATTCTAAGACCCAACTGGACCGAGGG
* * * * *
27556088 TTGCGGCAGTAGGATCGACAGCACGCAGGAGGGATCGGGCCAGTCCCCAACTTGCTCATTCTGCC
65 TTGCGGCAGCAGGACCGACAGCACGCAGGAAGGATCGGGCCAGTCCCCAACTTGCGCATTATGCC
* * * * **
27556153 TCTCCGATCGGCTGAGCGCCTGCACGCT
130 TCTCCGACCAGCTCAACGCCCACACGCT
* *
27556181 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCAT-TCTAAG
27556228 TATACGGAGT
Statistics
Matches: 167, Mismatches: 33, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
157 4 0.02
158 116 0.69
159 45 0.27
160 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (157 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTAATTCCATTCTAAGACCCAACTGGACCGAGGGT
TGCGGCAGCAGGACCGACAGCACGCAGGAAGGATCGGGCCAGTCCCCAACTTGCGCATTATGCCT
CTCCGACCAGCTCAACGCCCACACGCT
Found at i:27556232 original size:26 final size:26
Alignment explanation
Indices: 27556203--27556253 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
27556193 TGGCTTAGGC
*
27556203 ATACAGAGTTTATT-CCATGTCTAAGT
1 ATACAGAGTTCATTCCCA-GTCTAAGT
*
27556229 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
27556254 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:27557221 original size:26 final size:26
Alignment explanation
Indices: 27557191--27557241 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
27557181 TGACTTAGTT
27557191 ATACGAAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAGTCTAAGC
*
27557217 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
27557242 ATCAGATAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Found at i:27557622 original size:158 final size:155
Alignment explanation
Indices: 27557215--27557713 Score: 445
Period size: 158 Copynumber: 3.2 Consensus size: 155
27557205 CCCAGTCTAA
* *
27557215 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGATAGGACTGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGAT-AGATCGAACTGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * *
27557279 AGCTCGCAGGCGGGACCAGGTCGATCCCCGGCTTGTGCATTTTGCCTCTCCAGTCGGCTGAGCGC
64 AGCACGCAGGGGGGATC-GGTCGATCCTCGGCTTGCGCA-TTTGCCTCTCCAGTCGGATGAGCAC
* *
27557344 CCGTACACCCGTTTCATGGGTTGGCTTAG
127 CCGCACACTCGTTTCATGGGTTGGCTTAG
* * * ** * * * * *
27557373 GCATAGGGAGTTCATTCCATGTGTAAGCCCAG-TC-AGACCGAGGGTTGTGG-CGACGGGACCGA
1 GCATACGAAGTTCATTCCATGTCTAAG-ATAGATCGA-ACTGAGGGTTGCGGTAG-CAGGATCGA
* * * * * * * *
27557435 CAGCACGTAGAGGGCGATTGGGCCAATCCTCGGCTTGCGCATTATGCCTCTCTAG-CTGGATCAA
63 CAGCACGCAG-GGGGGA-TCGGTCGATCCTCGGCTTGCGCATT-TGCCTCTCCAGTC-GGATGAG
* *
27557499 CACCCGCACACTCATTTCATGGGTTGACTTAG
124 CACCCGCACACTCGTTTCATGGGTTGGCTTAG
* * * *
27557531 GCATACGAAGTTCATTCCCA-GTCTAAGATTGACCCGAACTGAGGGTTACGGTAGCAAGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATAGA-TCGAACTGAGGGTTGCGGTAGCAGGATCGAC
* * *
27557595 AGCACGCAGGGGGGATCGCGTCGATCCTCGACTTGCGTATTTGCCTCTCCAGTCGGTTGAGCACC
64 AGCACGCAGGGGGGATCG-GTCGATCCTCGGCTTGCGCATTTGCCTCTCCAGTCGGATGAGCACC
** *
27557660 CGCACACAT-GTTTTGTGGGCTGGCTTAG
128 CGCACAC-TCGTTTCATGGGTTGGCTTAG
27557688 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
27557714 ACATATAGAG
Statistics
Matches: 263, Mismatches: 61, Indels: 35
0.73 0.17 0.10
Matches are distributed among these distances:
156 4 0.02
157 98 0.37
158 129 0.49
159 30 0.11
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (155 bp):
GCATACGAAGTTCATTCCATGTCTAAGATAGATCGAACTGAGGGTTGCGGTAGCAGGATCGACAG
CACGCAGGGGGGATCGGTCGATCCTCGGCTTGCGCATTTGCCTCTCCAGTCGGATGAGCACCCGC
ACACTCGTTTCATGGGTTGGCTTAG
Found at i:27558097 original size:26 final size:26
Alignment explanation
Indices: 27558068--27558120 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27558058 GTTGACTTAG
*
27558068 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
27558094 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
27558120 G
1 G
27558121 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:27558295 original size:26 final size:26
Alignment explanation
Indices: 27558265--27558316 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27558255 GTTGACTTAG
27558265 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
*
27558291 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27558317 TATCGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27558327 original size:197 final size:197
Alignment explanation
Indices: 27558031--27558410 Score: 600
Period size: 197 Copynumber: 1.9 Consensus size: 197
27558021 CTCTGGTCGG
* * *
27558031 CTGAGCGCCCGTACGCTCGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
* *
27558096 ATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGACCAGCAGC
66 ATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGACCAGCAGC
*
27558161 ACGT-AGCGGGGACCGGGTCGATCCTCAACTTGTGCATTCTACCTCTCCAGTCGACCTCTTCGGC
131 ACGTAAG-GGGGACCGGGCCGATCCTCAACTTGTGCATTCTACCTCTCCAGTCGACCTCTTCGGC
27558225 GGA
195 GGA
27558228 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
* * * * *
27558293 ATACAGAGTTCATTCCCAGTCTAATATCGGACCAGACCGAGGGTTGCGGTAGCAAGATCGGCAGC
66 ATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGACCAGCAGC
* ** * *
27558358 ACGTAAGGGGGACTGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGTCG
131 ACGTAAGGGGGACCGGGCCGATCCTCAACTTGTGCATTCTACCTCTCCAGTCG
27558411 GCTGAGCGCC
Statistics
Matches: 166, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
197 164 0.99
198 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.22
Consensus pattern (197 bp):
CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGC
ATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGACCAGCAGC
ACGTAAGGGGGACCGGGCCGATCCTCAACTTGTGCATTCTACCTCTCCAGTCGACCTCTTCGGCG
GA
Found at i:27558797 original size:26 final size:26
Alignment explanation
Indices: 27558767--27558818 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27558757 GTTGGCTTAG
27558767 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27558793 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27558819 AATTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27559517 original size:26 final size:26
Alignment explanation
Indices: 27559487--27559536 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
27559477 GTTGACTCAG
27559487 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27559513 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
27559537 GAGATCGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27559987 original size:158 final size:158
Alignment explanation
Indices: 27559513--27560005 Score: 555
Period size: 158 Copynumber: 3.1 Consensus size: 158
27559503 CCCAGTCTAA
* * * * * * * *
27559513 GCATATGGAGTTCATTCCCAGTCTGAGATCGGATCGGATCGAGGGTTGCGACAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGACA
* * * * * *
27559578 GCACGCAGGGAGGACC-GAGCTGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGTGC
66 GCACGTAGGGGGGACCGGA-CCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGC
* *
27559642 CCGCACGCCCATTTCGTGGGTTGGCTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * *
27559671 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTATGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGA
* * * * *
27559734 CAGCATGTAGAGGGGGACCGGGCCGATCCAC-GGCTTGCGCATTATGCCTCT-TCGGCTGGCTTA
64 CAGCACGTAG-GGGGGACCGGACCGATCC-CTGGCTTGCGCATTCTGCCTCTCT-GGCCGGCTGA
* *
27559797 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
126 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *
27559830 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGATTGTGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGACA
* * *
27559895 GCACGTAGGGGGGACCGGATCGGTCCCTGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCC
66 GCACGTAGGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCC
* *
27559960 CGCACGTTTGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
27559988 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
27560006 ATGCCTAAGC
Statistics
Matches: 273, Mismatches: 52, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 4 0.01
158 140 0.51
159 124 0.45
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATCGACA
GCACGTAGGGGGGACCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:27560014 original size:158 final size:157
Alignment explanation
Indices: 27559552--27560016 Score: 535
Period size: 159 Copynumber: 2.9 Consensus size: 157
27559542 CGGATCGGAT
* * * * * *
27559552 CGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGAGGACC-GAGCTGATCCCTGGCTTACGCA
1 CGAGGGTTGTGACAGCAGGATCGACAGCACGTAGGGGGGACCGGA-CCGATCCCTGGCTTGCGCA
* * * * *
27559616 TTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAG
65 TTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
*
27559681 TTCATTCCATGTCTAAGCCCCAGCCAGAC
130 TTCATTCCATG-CTAAGCACCAGCCAGAC
* * * * * *
27559710 CGAGGGTTATGGCAGCGGGACCGACAGCATGTAGAGGGGGACCGGGCCGATCCAC-GGCTTGCGC
1 CGAGGGTTGTGACAGCAGGATCGACAGCACGTAG-GGGGGACCGGACCGATCC-CTGGCTTGCGC
* * * * * *
27559774 ATTATGCCTCT-TCGGCTGGCTTAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAG
64 ATTCTGCCTCTCT-GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
*
27559838 AGTTCATTCCCAAT-CTAAG-ATCAGACCAGAC
128 AGTTCATT-CC-ATGCTAAGCACCAG-CCAGAC
* * * *
27559869 CGAGGATTGTGACAGCAGGATCGACAGCACGTAGGGGGGACCGGATCGGTCCCTGACTTGCGCAT
1 CGAGGGTTGTGACAGCAGGATCGACAGCACGTAGGGGGGACCGGACCGATCCCTGGCTTGCGCAT
* *
27559934 TCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGTTTGTTTCGTGGGTTGGCTTAGGCATACGGAGT
66 TCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
27559999 TCATTCCATGCCTAAGCA
131 TCATTCCATG-CTAAGCA
27560017 TACGGAGTTC
Statistics
Matches: 252, Mismatches: 43, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
156 2 0.01
157 3 0.01
158 119 0.47
159 122 0.48
160 4 0.02
161 2 0.01
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (157 bp):
CGAGGGTTGTGACAGCAGGATCGACAGCACGTAGGGGGGACCGGACCGATCCCTGGCTTGCGCAT
TCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGCTAAGCACCAGCCAGAC
Found at i:27560397 original size:512 final size:502
Alignment explanation
Indices: 27559413--27560528 Score: 1329
Period size: 512 Copynumber: 2.2 Consensus size: 502
27559403 TACCACCCGT
* * * * * * * *
27559413 TCGATCCCCGACTTGCGCATCCTGCCTCTCTGGTCAGTTGAGAGTCCGCACGCTCGTTTCATGGG
1 TCGATCCCAGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * * *
27559478 TTGACTCAGGCATACGGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTCCCAGTCTGAGAT
66 TTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
27559542 CGGATCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGAGGACCGAGCTGATCCCTG
130 CAGACCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGAGGACCGAGCCGATCCCTA
* * * ** *
27559607 GCTTACGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTTAGG
195 ACTTACGCATTCTCCCTCTCCGACCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGG
*
27559672 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCGGGACCGACAG
260 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAACGAGGGTTATGGCAGCGGGACCGACAG
* * * * * *
27559737 CATGTAGAGGGGGACCGGGCCGATCCACGGCTTGCGCATTATGCCTCTTCGGCTGGCTTAGCGCC
325 CACGCAGAGAGGGACCGGGCCGATCCACGGCTTGCGCATTATGCCGCTCCGGCTGGCTCAGCGCC
*
27559802 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAG
390 CGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAG
* * *
27559867 ACCGAGGATTGTGACAGCAGGATCGACAGCACGTAGGGG-GGACCGGA
455 ACCGAGGATTGCGACAGCAAGATCGACAGCACGCAGGGGTGGACCGGA
* * * *
27559914 TCGGTCCCTGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGTTTGTTTCGTGGG
1 TCGATCCCAGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
*
27559979 TTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
*
27560044 AGACCGGA-CTGAGGGTTGC-AGCAGCAGGACCAGTAACGGATCGGCAGCGCATAAGGG-GGACC
131 AGACCGGATC-GAGGGTTGCGA-CAGCAGG---A-T--CGG--CAGCA-CGC---AGGGAGGACC
* * *
27560106 G-GACCGATCCCTAACTTGCGCATTCTCCCTTTCCGACCGGCTGAGCATCCGCACG-CCAGTTTC
182 GAG-CCGATCCCTAACTTACGCATTCTCCCTCTCCGACCGGCTGAGCACCCGCACGCCCA-TTTC
* * * * *
27560169 ATGGGTTGGTTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-GAATGAAGGGTTGTG
245 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAACG-AGGGTTATG
* *
27560233 GCAGCGGGACCGACAGCACGCAGAGAGGGATCGGGCCGATCC-CTGGCTTGCGTATTATGCCGCT
309 GCAGCGGGACCGACAGCACGCAGAGAGGGACCGGGCCGATCCAC-GGCTTGCGCATTATGCCGCT
* * *
27560297 CCGGTTGGCTCAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATAC-GAAGTTCATTCCC
373 CCGGCTGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAG-AGTTCATTCCC
* * * * *
27560361 AGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGCAAGATCGACAGCACGCAGGGGTGGACCGG
437 AATCTAAGATCAGACCAGACCGAGGATTGCGACAGCAAGATCGACAGCACGCAGGGGTGGACCGG
*
27560426 G
502 A
* * * * * * * *
27560427 TTGATCTCCAG-CTTGCACATTCTACCTCT-TCGGCCGACTGAGCACCTGCACGCCCATTTCGTG
1 TCGATC-CCAGACTTGCGCATTCTGCCTCTCT-GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* *
27560490 GGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCTAAGC
64 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
27560529 CCTAGCTGGA
Statistics
Matches: 519, Mismatches: 73, Indels: 34
0.83 0.12 0.05
Matches are distributed among these distances:
500 5 0.01
501 131 0.25
504 1 0.00
505 1 0.00
507 3 0.01
509 4 0.01
510 3 0.01
511 9 0.02
512 267 0.51
513 92 0.18
514 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (502 bp):
TCGATCCCAGACTTGCGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCGGATCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGAGGACCGAGCCGATCCCTAA
CTTACGCATTCTCCCTCTCCGACCGGCTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGC
ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGAACGAGGGTTATGGCAGCGGGACCGACAGC
ACGCAGAGAGGGACCGGGCCGATCCACGGCTTGCGCATTATGCCGCTCCGGCTGGCTCAGCGCCC
GCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGA
CCGAGGATTGCGACAGCAAGATCGACAGCACGCAGGGGTGGACCGGA
Found at i:27560669 original size:158 final size:157
Alignment explanation
Indices: 27560120--27561053 Score: 654
Period size: 158 Copynumber: 5.8 Consensus size: 157
27560110 CGATCCCTAA
* * * * ** * * * *
27560120 CTTGCGCATTCTCCCTTTCCGACCGGCTGAGCATCCGCACGC-CAGTTTCATGGGTTGGTTTGGG
1 CTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCTCACGCTC-GTTTCGTGGGTTGGCTTAGG
* * * * * *
27560184 CATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGAATGAAGGGTTGTGGCAGCGGGACCGAC
65 CATACGGAGTTCATTCCCA-GTCTAAG-ACCAGCTGGACTG-AGGGTTGTGGCAGCAGGATCGAC
* * *
27560247 AGCACGCAGAGAGGGATCGGGCCGATCCCTGG
127 AGCACACAGAGGGGGATCGGG-CGATCCCAGG
* * ** * * *
27560279 CTTGCGTATTATGCCGCTCCGGTTGGCTCAGCG-CCTGCACGCTCATTTCGTGGGTTGACTTAGG
1 CTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCT-CACGCTCGTTTCGTGGGTTGGCTTAGG
* * * * * *
27560343 CATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGACAGCAAGATCGACAG
65 CATACGGAGTTCATTCCCAGTCTAAGACCAGCT-GGACTGAGGGTTGTGGCAGCAGGATCGACAG
* * *
27560408 CACGCAG-GGGTGGACCGGGTTGATCTCCA-G
129 CACACAGAGGG-GGATCGGG-CGATC-CCAGG
* * * * * * * *
27560438 CTTGCACATTCTACCTCTTCGGCCGACTGAGC-ACCTGCACGCCCATTTCGTGGGTTGGCTTAGG
1 CTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCT-CACGCTCGTTTCGTGGGTTGGCTTAGG
* * * * **
27560502 CGTAGGGAGTTCATT-CCATGTCTAAGCCCTAGCTGGACTGAGGGTTGTGGCAGCGGGATCGGTA
65 CATACGGAGTTCATTCCCA-GTCTAAGACC-AGCTGGACTGAGGGTTGTGGCAGCAGGATCGACA
*
27560566 GGACACAGAGGGGGATCGGGCGATCCCAGG
128 GCACACAGAGGGGGATCGGGCGATCCCAGG
* * *
27560596 CTTGCGCATTATGCCTCTCCGGCCGGCCT-AGCGCCCTCAAGCTTGTTTCGTGGGTTGACTTAGG
1 CTTGCGCATTATGCCTCTCCGGCCGG-CTGAGCGCCCTCACGCTCGTTTCGTGGGTTGGCTTAGG
* * * * * * *
27560660 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGACGGTTGCGGTAGCAGGATCGATAG
65 CATACGGAGTTCATTCCCAGTCTAAGACCAG-CTGGACTGAGGGTTGTGGCAGCAGGATCGACAG
* * *
27560725 CACACAG-GGGGGATCAGGCTGGTCCCCGG
129 CACACAGAGGGGGATCGGGC-GATCCCAGG
* * * * * *
27560754 CTTGCGCATTCTACCTCTCCAGCTGGCTGAGCACCCGCACGCTTC-TTTCGTGGGTTGGCTTAGG
1 CTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCTCACGC-TCGTTTCGTGGGTTGGCTTAGG
* * * * *
27560818 CATACGGAGTTCATTCCCAGTTTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGACTAGCAG
65 CATACGGAGTTCATTCCCAGTCTAAGACCAG-CTGGACTGAGGGTTGT--------G----GCAG
* * *
27560883 CAGGATCGACAGCACACA-AGGGGGACCGAGCTGATCCCCGG
117 CAGGATCGACAGCACACAGAGGGGGATCGGGC-GATCCCAGG
* * * * *
27560924 CTTGCACATTTTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
1 CTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCTCACGCTCGTTTCGTGGGTTGGCTTAGGC
** * * ** * *
27560989 ATACGTTGTTCATT-CCATGTCTAAGCCCCAACCAGA-TCGAGGGTTGTGGCTGCAGGACCGACA
66 ATACGGAGTTCATTCCCA-GTCTAAG-ACCAGCTGGACT-GAGGGTTGTGGCAGCAGGATCGACA
27561052 GC
128 GC
27561054 GAGATCAGCA
Statistics
Matches: 615, Mismatches: 124, Indels: 73
0.76 0.15 0.09
Matches are distributed among these distances:
157 18 0.03
158 230 0.37
159 220 0.36
160 16 0.03
162 1 0.00
166 1 0.00
169 5 0.01
170 123 0.20
171 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
CTTGCGCATTATGCCTCTCCGGCCGGCTGAGCGCCCTCACGCTCGTTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGACCAGCTGGACTGAGGGTTGTGGCAGCAGGATCGACAGCA
CACAGAGGGGGATCGGGCGATCCCAGG
Found at i:27561032 original size:170 final size:170
Alignment explanation
Indices: 27560711--27561046 Score: 426
Period size: 170 Copynumber: 2.0 Consensus size: 170
27560701 CGGTTGCGGT
* * * * *
27560711 AGCAGGATCGATAGCACACAGGGGGGATCAGGCTGGTCCCCGGCTTGCGCATTCTACCTCTCCAG
1 AGCAGGATCGACAGCACACAAGGGGGACCAGGCTGATCCCCGGCTTGCACATTCTACCTCTCCAG
* * *
27560776 CTGGCTGAGCACCCGCACGCTTCTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTT
66 CCGGCTGAGCACCCGCACGCTTCTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* ** *
27560841 AAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGACTAGC
131 AAGACCCAACCAGACCGAGGGTTGTGGCAGCAGGACTAGC
* * * *
27560881 AGCAGGATCGACAGCACACAAGGGGGACC-GAGCTGATCCCCGGCTTGCACATTTTGCCTCTTCG
1 AGCAGGATCGACAGCACACAAGGGGGACCAG-GCTGATCCCCGGCTTGCACATTCTACCTCTCCA
* **
27560945 GCCGGCTGAGCGCCCGCACGC-TCGTTTCATGGGTTGGCTTAGGCATACGTTGTTCATT-CCATG
65 GCCGGCTGAGCACCCGCACGCTTC-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-G
* * *
27561008 TCTAAGCCCCAACCAGATCGAGGGTTGTGGCTGCAGGAC
128 TCTAAGACCCAACCAGACCGAGGGTTGTGGCAGCAGGAC
27561047 CGACAGCGAG
Statistics
Matches: 141, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
169 6 0.04
170 135 0.96
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (170 bp):
AGCAGGATCGACAGCACACAAGGGGGACCAGGCTGATCCCCGGCTTGCACATTCTACCTCTCCAG
CCGGCTGAGCACCCGCACGCTTCTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGACCCAACCAGACCGAGGGTTGTGGCAGCAGGACTAGC
Found at i:27561402 original size:26 final size:26
Alignment explanation
Indices: 27561366--27561418 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27561356 GTTGGCTTAG
27561366 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27561392 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27561418 G
1 G
27561419 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27561582 original size:194 final size:195
Alignment explanation
Indices: 27561148--27561587 Score: 546
Period size: 195 Copynumber: 2.3 Consensus size: 195
27561138 CTGCCCGCAT
*
27561148 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATC
1 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATC
* * * * * *
27561213 CCCAGTCTAAGATCGGACTAGACTTAGCGTTGTAGTAGCAGGACCAGCAGCAAGATCGATAGCAC
66 CCCAGTCTAAGATCGAACCAGACTGAGCGTTGGAGCAGCAGGACCAGCAGCAAGATAGATAGCAC
** * ** * * * * *
27561278 GTAGGGAGGACCGGGCTGATCCCTGACTTATGCATTCTGCCTCTCCGATCGCTGAGCGCCCGCAC
131 CCAAGGAGGACCGGGCCAATCCCTGACTTACGCATTCTACCTCTCCGACCGCTGAGCACCCACAC
* * *
27561343 GCCCGTTTCCTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATC
* * * *
27561408 CCCAGTCTAAGATCGAACCGGA-TCGAGGGTTGCGA-CAGCCGGACCAGCA-CAGGATAGATAGC
66 CCCAGTCTAAGATCGAACCAGACT-GAGCGTTG-GAGCAGCAGGACCAGCAGCAAGATAGATAGC
* * * *
27561470 ACCCAAGGA-GACCGGGCCAATCCGTGGCTTGCGCATTCTACCTCTCCGACCGGTTGAGCACCCA
129 ACCCAAGGAGGACCGGGCCAATCCCTGACTTACGCATTCTACCTCTCCGACC-GCTGAGCACCCA
27561534 CAC
193 CAC
* * *
27561537 GCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
1 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
27561588 CCCAGTCAGA
Statistics
Matches: 210, Mismatches: 32, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
193 34 0.16
194 77 0.37
195 98 0.47
196 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (195 bp):
GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATC
CCCAGTCTAAGATCGAACCAGACTGAGCGTTGGAGCAGCAGGACCAGCAGCAAGATAGATAGCAC
CCAAGGAGGACCGGGCCAATCCCTGACTTACGCATTCTACCTCTCCGACCGCTGAGCACCCACAC
Found at i:27561919 original size:26 final size:26
Alignment explanation
Indices: 27561889--27561941 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27561879 GTTGGCTGAG
27561889 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27561915 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27561941 G
1 G
27561942 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27562322 original size:524 final size:522
Alignment explanation
Indices: 27561259--27562440 Score: 1337
Period size: 524 Copynumber: 2.3 Consensus size: 522
27561249 AGCAGGACCA
* * * * * * ***
27561259 GCAGCAAGATCGATAGCACGTAGGGAGGACCGGGCTGATCC-CTGACTTATGCATTCTGCCTCTC
1 GCAGCAAGATCGACAGCACGCAGGGGGGACCAGGCCGATCCTC-GGCTTGCCCATTCTGCCTCTC
* * * *
27561323 CGATCGCTGAGCGCCCGCACGCCCGTTTCCTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
65 CGAGCGCTGAGCGCCCGCACGCCCGTTTCATAGGTTGGCTGAGGCATACGGAGTTCATTCCATGT
* * *
27561388 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGAGGGTTGCGACAGCCGGACC
130 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCAAGGGTTACGACAGCAGGACC
* * * *
27561453 AGCACAGGATAGATAGCACCCAAGGAGACCGGGCCAATCCGTGGCTTGCGCATTCTACCTCTCCG
195 AGCACAAGATAGACAGCACCCAAGGAGACCGAGCCAATCCGTCGCTTGCGCATTCTACCTCTCCG
* * * *
27561518 ACCGGTTGAGCACCCACACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTC
260 ACCGATTGAGCACCCACACGCTCATTTCATGAGTTGGCTTAGGCATACGAAGTTCATTCAATGTC
* * * * * * * *
27561583 TAAGCCCCAGTCAGACCGAGGGTTATGGTAGCAGGGCTGGCAGTGGGATCGATAGCACACAGAGG
325 TAAGCCCCAGCCAGACCGAGGGTTATGGCAGCAGGACCGACAGCGAGATCGACAGCACACAGAGG
* * ** * *
27561648 GGTACCGAGTCGATCCCTGGCTTGCAAATTATGCCTTTCCAGCCGGCTCAGCACCCGCACGCTCG
390 GGGACCGAGCCGATCCCCAGCTTACAAATTATGCCTCTCCAGCCGGCTCAGCACCCGCACGCTCG
* *
27561713 TTTCGAGGGTTGACTTATGCACACGGAGTTCATTCCTAGTCTAAGATCGAACTGGACCAAGGGTT
455 TTTCGAGGGTTGACTTATGCACACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTT
27561778 GAG
520 GAG
* * *
27561781 GCAGTAGGATCGACAGCACGCAGGGGGGACCAGGCCGATCCTCGGCTTGCCCATTTTGCCTCTCC
1 GCAGCAAGATCGACAGCACGCAGGGGGGACCAGGCCGATCCTCGGCTTGCCCATTCTGCCTCTCC
* * *
27561846 GGGCGGCTGAGCGCCTGCACGCTCGTTTCATAGGTTGGCTGAGGCATACGGAGTTCATTCCATGT
66 GAGC-GCTGAGCGCCCGCACGCCCGTTTCATAGGTTGGCTGAGGCATACGGAGTTCATTCCATGT
* *
27561911 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGG-TCCAAGGGTTACGACAGCAGGAC
130 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGAT-CAAGGGTTACGACAGCAGGAC
* ** * * * *
27561975 CAGCACAAGATCGACAGCACGTATGGGGGACCGAGCCAATCCGTCGCTTGCGCATTCTGCCTCTT
194 CAGCACAAGATAGACAGCACCCA-AGGAGACCGAGCCAATCCGTCGCTTGCGCATTCTACCTCTC
* * * * * * *
27562040 CGGCCGATTGAGCGCCCGCACGCTCGTTTCATTAGTTGGCTTAGGCATACGGAGTTCATTCAATT
258 CGACCGATTGAGCACCCACACGCTCATTTCATGAGTTGGCTTAGGCATACGAAGTTCATTCAATG
* * * * *
27562105 TCTAATCCCCAGCCAGACTGAGGGTTGTGGCAGCAGGACCGACAGCGAGATCGGCAGCACATAGA
323 TCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCAGGACCGACAGCGAGATCGACAGCACACAGA
* * ** * * *
27562170 GGGGGACTGGGCCGATCCCCAGCTTACGTATTATGCCTCTCCGGCCGGCTCAGCGCCCGTACGCT
388 GGGGGACCGAGCCGATCCCCAGCTTACAAATTATGCCTCTCCAGCCGGCTCAGCACCCGCACGCT
* * * * *
27562235 CGTTTTGTGGGTTGACTTATGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CAGAGG
453 CGTTTCGAGGGTTGACTTATGCACACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCA-AGG
**
27562299 GTTGCT
517 GTTGAG
* * * *** * * * * * * * * *
27562305 GTAGCAAGATTGACAGCACGTAGGGGGGATTGGGTCGAACCCCAGCTTGCGCAGTCTACCTTTTC
1 GCAGCAAGATCGACAGCACGCAGGGGGGACCAGGCCGATCCTCGGCTTGCCCATTCTGCCTCTCC
* * * ** ** *
27562370 GATCAACTGAGCGCCCTCACGTTCGTTTTGTCA-GTTGGCTTAGGCATACGGAGTTCATTCCATG
66 GAGC-GCTGAGCGCCCGCACGCCCGTTTCAT-AGGTTGGCTGAGGCATACGGAGTTCATTCCATG
27562434 TCTAAGC
129 TCTAAGC
27562441 CCCAGTCGGA
Statistics
Matches: 545, Mismatches: 109, Indels: 10
0.82 0.16 0.02
Matches are distributed among these distances:
522 54 0.10
523 133 0.24
524 357 0.66
525 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (522 bp):
GCAGCAAGATCGACAGCACGCAGGGGGGACCAGGCCGATCCTCGGCTTGCCCATTCTGCCTCTCC
GAGCGCTGAGCGCCCGCACGCCCGTTTCATAGGTTGGCTGAGGCATACGGAGTTCATTCCATGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATCAAGGGTTACGACAGCAGGACCA
GCACAAGATAGACAGCACCCAAGGAGACCGAGCCAATCCGTCGCTTGCGCATTCTACCTCTCCGA
CCGATTGAGCACCCACACGCTCATTTCATGAGTTGGCTTAGGCATACGAAGTTCATTCAATGTCT
AAGCCCCAGCCAGACCGAGGGTTATGGCAGCAGGACCGACAGCGAGATCGACAGCACACAGAGGG
GGACCGAGCCGATCCCCAGCTTACAAATTATGCCTCTCCAGCCGGCTCAGCACCCGCACGCTCGT
TTCGAGGGTTGACTTATGCACACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTG
AG
Found at i:27562618 original size:26 final size:26
Alignment explanation
Indices: 27562582--27562634 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27562572 GTTGACTTAG
27562582 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
27562608 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27562634 G
1 G
27562635 ATCGGACGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27563102 original size:26 final size:26
Alignment explanation
Indices: 27563053--27563103 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27563043 TGGCTTAGGC
*
27563053 ATACGGAGTTCATTCCATGTCTAAGT
1 ATACGGAGTTCATTCCATGCCTAAGT
27563079 ATACGGAGTTCATTCC-TAGCCTAAG
1 ATACGGAGTTCATTCCAT-GCCTAAG
27563104 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGCCTAAGT
Found at i:27569729 original size:26 final size:26
Alignment explanation
Indices: 27569693--27569744 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27569683 TTGACTTAGC
*
27569693 CATATGGAGTTCA-TCCTCAGTCTAAG
1 CATACGGAGTTCATTCC-CAGTCTAAG
27569719 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
27569745 ATCGAATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:27570195 original size:157 final size:154
Alignment explanation
Indices: 27569718--27570218 Score: 483
Period size: 159 Copynumber: 3.2 Consensus size: 154
27569708 CTCAGTCTAA
* ** ** *
27569718 GCATACGGAGTTCATTCCCA-GTCTAAGATC-GAATTGGACCGAGGGTTACGGTAATAGGATCGG
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAG-ACCGGACCGAGGGTTACGGTAGCAGGATCGA
* * * * * * *
27569781 TAGCATGCAGGAGGGACCGGGCCAATCCCTGGCTTGCGAATTCTGCCTCTTCGATCGGCCAAGCA
64 CAGCACG-AGG-GGGA-CAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCA
27569846 CCTGCACGC-CTGTTTCGTGGGTTGGCTTAG
126 CC-GCACGCTC-GTTTCGTGGGTTGGCTTAG
* * ** * * ** *
27569876 GCATAAGGAGTTCATTCCATGTCTAAGCCCCA-ACCGGACTGACGGTTGTGGTAGCGGGATCGAC
1 GCATACGAAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGAC
* * * * *
27569940 AGCACACAGAGGGGGACAAGGCCGATCCCTGGCTTGCGCATTATGTCTCTCCGGTTGGCTCAGCA
65 AG--CAC-GAGGGGGAC-AGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCA
* * *
27570005 CCCGCATGCTCATTTCGTGGGTTGACTTAG
126 -CCGCACGCTCGTTTCGTGGGTTGGCTTAG
27570035 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGAC
1 GCATACGAAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGAC
* * * * *
27570099 AGCACGTAGGGGGATCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCT
65 AGCACG-AGGGGGA-CAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCAC-
27570164 CGCACGCTCGTTTCGTGGGTTGGCTTAG
127 CGCACGCTCGTTTCGTGGGTTGGCTTAG
27570192 GCATAC-AGAGTTCATTCCATGTCTAAG
1 GCATACGA-AGTTCATTCCATGTCTAAG
27570219 CATACAAAGT
Statistics
Matches: 278, Mismatches: 49, Indels: 33
0.77 0.14 0.09
Matches are distributed among these distances:
156 6 0.02
157 97 0.35
158 49 0.18
159 114 0.41
160 11 0.04
161 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (154 bp):
GCATACGAAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGATCGACA
GCACGAGGGGGACAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTAAGCACCGCA
CGCTCGTTTCGTGGGTTGGCTTAG
Found at i:27570229 original size:26 final size:26
Alignment explanation
Indices: 27570192--27570244 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27570182 GTTGGCTTAG
*
27570192 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
27570218 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
27570244 G
1 G
27570245 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:27570424 original size:26 final size:26
Alignment explanation
Indices: 27570388--27570440 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27570378 GTTGGCTTAG
*
27570388 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATAGAGTTCATTCCCA-GTCTAA
27570414 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
27570440 G
1 G
27570441 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:27570472 original size:196 final size:195
Alignment explanation
Indices: 27570124--27570611 Score: 733
Period size: 196 Copynumber: 2.5 Consensus size: 195
27570114 CAGGCTGATC
* * *
27570124 CCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCT
1 CCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
*
27570189 TAGGCATACAGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCG
66 TAGGCATACGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * *
27570254 GACCGAGGGTTGCGGTAGCAGGACCAGCAGCAGGATCGGTAGCACGCAGGGGGGACCGGGCCAAT
131 GACCGAAGGTTGCGGCAGCAGGACCAACAGCAGGATCGGCAACACGCAGGGGGGACCGAGCCAAT
*
27570319 CCTCGGCTTGTGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGC
1 CC-CGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGC
* * * * *
27570384 TTAGGCATATGGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGATC
65 TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACC
* *
27570449 GGACCGAAGGTTGTGGCAGCAGGACCAACAGCAGGATCGGCAACACGCAGGGGGGACCGAGCCGA
130 GGACCGAAGGTTGCGGCAGCAGGACCAACAGCAGGATCGGCAACACGCAGGGGGGACCGAGCCAA
27570514 T
195 T
* * * * * * *
27570515 CCCTGACTTACGCATTCTACCTCTCCGATTGACTGAGCGCCCGCACGCTCATTTCATCGGTTGGC
1 CCC-GGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGC
27570580 TTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 TTAGGCATACGGAGTTCATTCCATGTCTAAGC
27570612 CCCAGCTGGA
Statistics
Matches: 264, Mismatches: 27, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
195 3 0.01
196 261 0.99
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (195 bp):
CCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCT
TAGGCATACGGAGTTCATTCCATGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCG
GACCGAAGGTTGCGGCAGCAGGACCAACAGCAGGATCGGCAACACGCAGGGGGGACCGAGCCAAT
Found at i:27571311 original size:159 final size:157
Alignment explanation
Indices: 27570795--27571379 Score: 513
Period size: 159 Copynumber: 3.7 Consensus size: 157
27570785 CCAATCTAAG
* * * * *
27570795 CATACGGAGTTCATTCCCA-GTCCAAG-ATCGAACTGGACCGAGGGTTGTGACAGCAGGATCAGC
1 CATAGGGAGTTCATT-CCATGTCTAAGCATC-AGCCGGACCGAGGGTTGTGACAGCAGGATCGGC
* * * * ** *
27570858 AGCACGCAAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTATCTC-TCCGGCCGACTGAGCA
64 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCC-GTCGACTGAGC-
* * *
27570922 CCCTGCATGCCCGTTTCATGGGTTGGCTTAGT
127 GCCTGCACGCCCGTTTCGTGGGTTGGCTTA-T
* ** **
27570954 CATAGGGAGTTCATTCCATGTCTAAGCCA-CAGCCGGATCGAGGGTTGTGGTAGTGGGATCGGCA
1 CATAGGGAGTTCATTCCATGTCTAAG-CATCAGCCGGACCGAGGGTTGTGACAGCAGGATCGGCA
* * * * *
27571018 GCACGTC-GGAGGGACCGGGCTGATCCCCGGCTTTGCGTATTCTGCCT-TTCCGATCGAATGAGT
65 GCACG-CAGGGGGGACCGGGCCGATCCCCGGC-TTGCGCATTCTGCCTCTTCCG-TCGACTGAGC
* * *
27571081 GCCCGCACGCCCGTTTCGTGGGTTGGCCTAGG
127 GCCTGCACGCCCGTTTCGTGGGTTGGCTTA-T
* * ** * ** *
27571113 CATAGGGAGTTCATTCCATGCCTATGCCCCAGCCAGACCGAGGGTTGTGGTAGCGGGA-CTGGCA
1 CATAGGGAGTTCATTCCATGTCTAAGCATCAGCCGGACCGAGGGTTGTGACAGCAGGATC-GGCA
* * * * * * *
27571177 GCACGCAGAGGGGGACCAGGCCCATCCCTGGCTTGCGCATTATGCCTCTTCTGTCGGCTCAGCGC
65 GCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCCGTCGACTGAGCGC
* * *
27571242 CTGCACACTCGTTTCGTGGGTTGACTTAT
129 CTGCACGCCCGTTTCGTGGGTTGGCTTAT
* ** *
27571271 ACATATGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTACGACAGCAGGATCGA
1 -CATAGGGAGTTCATT-CCATGTCTAAGCATCAG-CCGGACCGAGGGTTGTGACAGCAGGATCGG
*
27571334 CAGCACACAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGC
63 CAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGC
27571380 ATCTCTGGCC
Statistics
Matches: 341, Mismatches: 69, Indels: 33
0.77 0.16 0.07
Matches are distributed among these distances:
158 41 0.12
159 249 0.73
160 50 0.15
161 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (157 bp):
CATAGGGAGTTCATTCCATGTCTAAGCATCAGCCGGACCGAGGGTTGTGACAGCAGGATCGGCAG
CACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCCGTCGACTGAGCGCCT
GCACGCCCGTTTCGTGGGTTGGCTTAT
Found at i:27571459 original size:26 final size:26
Alignment explanation
Indices: 27571429--27571480 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27571419 TTTAGCTTAG
27571429 GCATACGAAGTTCATTCCACA-TCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
*
27571455 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
27571481 TATTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:27572479 original size:159 final size:157
Alignment explanation
Indices: 27572212--27572678 Score: 497
Period size: 159 Copynumber: 2.9 Consensus size: 157
27572202 AGATCGGACT
** * * * * * * *
27572212 GGACCGAGGGTTGTGGTTGTAGGATCGACAGCACGCAGAGGGGACAGGGCCAATCCCCAACTTAC
1 GGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTAC
* * * * *
27572277 GCATTCTACCTCTCCGACCGGCTGAGCGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
66 GCATTCTGCCTCTCCGACCGGCTGAGCACC-GCATGCTCGTTTCGTGGGTTGGCTTAGGCATACG
* * *
27572342 GAGTTCAATCCATGTGTAAGCCCCAG-CC
130 GAGTTCATTCCATGTCTAA-CACCAGACC
* ** * * * * * *
27572370 GGATCGAGGGTTGTGGCAGTGGGGTCGGCAGCACGTAGAGGGGGACCGAGCTGGTCCCTGACTTG
1 GGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAG-GGGGGACCGAGCCGATCCCCGACTTA
* * * * *
27572435 CGCATTATGCCTCTTCGACCGGCTCAGCACTCGCATGCTCGTTTCGTGGGTTGACTTATGCATAC
65 CGCATTCTGCCTCTCCGACCGGCTGAGCAC-CGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * *
27572500 AGAGTTCATTCCCA-GTCTAACATCAGATC
129 GGAGTTCATT-CCATGTCTAACACCAGACC
* * *
27572529 GGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTCAC
1 GGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTAC
* *
27572594 GCATTCTGCCTCTCCGACCGACTTGAGCACCCACATGCTCGTTTCGTGGGTTGGCTTAGGCATAC
66 GCATTCTGCCTCTCCGACCGGC-TGAGCA-CCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
27572659 GGAGTTCATTCCATGGCTAA
129 GGAGTTCATTCCATGTCTAA
27572679 GCATACAGAG
Statistics
Matches: 249, Mismatches: 53, Indels: 13
0.79 0.17 0.04
Matches are distributed among these distances:
158 77 0.31
159 167 0.67
160 5 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.22
Consensus pattern (157 bp):
GGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGGGGGACCGAGCCGATCCCCGACTTAC
GCATTCTGCCTCTCCGACCGGCTGAGCACCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAACACCAGACC
Found at i:27572683 original size:26 final size:25
Alignment explanation
Indices: 27572653--27572809 Score: 129
Period size: 26 Copynumber: 6.0 Consensus size: 25
27572643 GTTGGCTTAG
27572653 GCATACGGAGTTCATTCCATGGCTAA
1 GCATACGGAGTTCATTCCA-GGCTAA
* * * *
27572679 GCATACAGAGTTCCTTCCCAGTCTAG
1 GCATACGGAGTTCATT-CCAGGCTAA
* *
27572705 GCATACGGAGTTCATTCCCAGTCTAC
1 GCATACGGAGTTCATT-CCAGGCTAA
* *
27572731 GCATACGGAGTTCATCCCCATTG-TAA
1 GCATACGGAGTTCAT-TCCA-GGCTAA
*
27572757 GCATACGGAGTTCATCCCCAGTG-TAA
1 GCATACGGAGTTCAT-TCCAG-GCTAA
* *
27572783 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCA-TTCCAGGCTAA
27572809 G
1 G
27572810 ATCGGATCGG
Statistics
Matches: 110, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
26 106 0.96
27 4 0.04
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGGCTAA
Found at i:27572735 original size:52 final size:52
Alignment explanation
Indices: 27572650--27572807 Score: 192
Period size: 52 Copynumber: 3.0 Consensus size: 52
27572640 TGGGTTGGCT
* * *
27572650 TAGGCATACGGAGTTCATT-CCATGGCTAAGCATACAGAGTTCCTTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTC
* * * *
27572702 TAGGCATACGGAGTTCATTCCCAGTCTACGCATACGGAGTTCATCCCCATTG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * *
27572754 TAAGCATACGGAGTTCATCCCCAGTGTAAGCATATGGAGTTCATTTCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
27572806 TA
1 TA
27572808 AGATCGGATC
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
52 86 0.97
53 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (52 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
Found at i:27572787 original size:78 final size:78
Alignment explanation
Indices: 27572653--27572807 Score: 213
Period size: 78 Copynumber: 2.0 Consensus size: 78
27572643 GTTGGCTTAG
* * * *
27572653 GCATACGGAGTTCATTCCATGGCTAAGCATACAGAGTTCCTTCCCAGTCTAGGCATACGGAGTTC
1 GCATACGGAGTTCATCCCATGGCTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
27572718 ATTCCCAGTCTAC
66 ATTCCCAGTCTAC
* * * *
27572731 GCATACGGAGTTCATCCCCATTG-TAAGCATACGGAGTTCATCCCCAGTGTAAGCATATGGAGTT
1 GCATACGGAGTTCAT-CCCATGGCTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTT
*
27572795 CATTTCCAGTCTA
65 CATTCCCAGTCTA
27572808 AGATCGGATC
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 62 0.93
79 5 0.07
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (78 bp):
GCATACGGAGTTCATCCCATGGCTAAGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAC
Found at i:27573071 original size:159 final size:158
Alignment explanation
Indices: 27572845--27573435 Score: 729
Period size: 159 Copynumber: 3.7 Consensus size: 158
27572835 AGCAAGTTCA
* * * * * * *
27572845 ACAGCACGCAGGGGGGACCGAGTCGATCCCTGGCTTGCTCATTCTACCTC-TCTGACCGGCTTAG
1 ACAGCACGCAGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTTC-GGCCGGCTCAG
* *
27572909 TGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
65 TGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
27572974 CCAGACCGAGGGTTGTGGCAGCGGGACCG
130 CCAGACCGAGGGTTGTGGCAGCGGGACCG
** * * * * *
27573003 GTAGCACACAGAGGGGGATCGAGTCGATCCCCGGCTTGCACATTATGTCTCTCCAGCCGGCTCAG
1 ACAGCACGCAG-GGGGGATCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAG
* *
27573068 TGCCCGCACGCTCATTTCATGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCACAG
65 TGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
* * *
27573133 CCGGACCGAGGGTTGTGGCAGTGGGATCG
130 CCAGACCGAGGGTTGTGGCAGCGGGACCG
* * * * * *
27573162 ACAGCACGCCGGGGGGATCG-GGCTGATCCCCGGCTTTCGCATTCTGCCTCTTCGGCCGGTTGAG
1 ACAGCACGCAGGGGGGATCGAGTC-GATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAG
* *
27573226 TGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAG
65 TGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
*
27573291 CCAGACCGAGGGTTGTGGTAGCGGGACCG
130 CCAGACCGAGGGTTGTGGCAGCGGGACCG
* * * * *
27573320 ACAGCATGCACAGGGGGA-CCAGGCCGATCCCCGGCTCGCGCATTATGCCTCTTCGGCCGGCTCA
1 ACAGCACGCA-GGGGGGATCGA-GTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCA
* * * * * * *
27573384 GCGCTCGCACGCTTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCC
64 GTGCCCGCACGC-TCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC
27573436 CAATCTAAGA
Statistics
Matches: 367, Mismatches: 59, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
157 2 0.01
158 144 0.39
159 185 0.50
160 36 0.10
ACGTcount: A:0.17, C:0.30, G:0.31, T:0.23
Consensus pattern (158 bp):
ACAGCACGCAGGGGGGATCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGCTCAGT
GCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
CAGACCGAGGGTTGTGGCAGCGGGACCG
Found at i:27573263 original size:158 final size:158
Alignment explanation
Indices: 27572845--27573602 Score: 724
Period size: 159 Copynumber: 4.8 Consensus size: 158
27572835 AGCAAGTTCA
* * * * * *
27572845 ACAGCACGCAGGGGGGACCGAG-TCGATCCCTGGCTTGCTCATTCTACCTC-TCTGACCGGCTT-
1 ACAGCACGCAGGGGGGACCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTTC-GGCCGG-TTC
* *
27572907 AGTGCCCACACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
63 AGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCAC
27572972 AGCCAGACCGAGGGTTGTGGCAGCGGGACCG
128 AGCCAGACCGAGGGTTGTGGCAGCGGGACCG
** * * * * * * * *
27573003 GTAGCACACAGAGGGGGATCGAG-TCGATCCCCGGCTTGCACATTATGTCTCTCCAGCCGGCTCA
1 ACAGCACGCAG-GGGGGACCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGTTCA
* *
27573067 GTGCCCGCACGCTCATTTCATGGGTTGGCTTAGTCATAGGGAGTTCATTCCATGTCTAAGCCACA
64 GTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCACA
* * *
27573132 GCCGGACCGAGGGTTGTGGCAGTGGGATCG
129 GCCAGACCGAGGGTTGTGGCAGCGGGACCG
* * * * *
27573162 ACAGCACGCCGGGGGGATCGGGCTGATCCCCGGCTTTCGCATTCTGCCTCTTCGGCCGGTTGAGT
1 ACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGTTCAGT
* * * *
27573227 GCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGC
66 GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCACAGC
*
27573292 CAGACCGAGGGTTGTGGTAGCGGGACCG
131 CAGACCGAGGGTTGTGGCAGCGGGACCG
* * * * * *
27573320 ACAGCATGCACAGGGGGACCAGGCCGATCCCCGGCTCGCGCATTATGCCTCTTCGGCCGGCTCAG
1 ACAGCACGCA-GGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGTTCAG
* * * * * * * **
27573385 CGCTCGCACGCTTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATTCCCA-ATCTAAGATTA
65 TGCCCGCACGC-TCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCA
* * * * *** * * *
27573449 GATCGA-ACTGAGGGTTCCAGTAGCAGGATCG
127 CAGCCAGACCGAGGGTTGTGGCAGCGGGACCG
* * * * *
27573480 ACAGCACGTAGGGGGGACCGGGCCGATCCCTGGCTTG-GCATTTTGCCTC-TCTGGCCGGTTGAG
1 ACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTC-GGCCGGTTCAG
* ** * ** *
27573543 CT-CCCGGACGCTTGTTTCGTAGGTTATCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 -TGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
27573603 ATACAGAGTT
Statistics
Matches: 495, Mismatches: 94, Indels: 24
0.81 0.15 0.04
Matches are distributed among these distances:
156 3 0.01
157 39 0.08
158 172 0.35
159 211 0.43
160 64 0.13
161 6 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
ACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTCTTCGGCCGGTTCAGT
GCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCACAGC
CAGACCGAGGGTTGTGGCAGCGGGACCG
Found at i:27573529 original size:317 final size:314
Alignment explanation
Indices: 27572782--27573602 Score: 961
Period size: 317 Copynumber: 2.6 Consensus size: 314
27572772 CCCCAGTGTA
* * * *
27572782 AGCATATGGAGTTCATTTCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCAAGTTCAAC
1 AGCATATGGAGTTCA-TTCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * *
27572847 AGCACGCAGGGGGGACCGAGTCGATCCCTGGCTTGCTCATTCTACCTCTCTGACCGGCTT-AGTG
65 AGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTG-GCATTCTGCCTCTCTGGCCGG-TTGAGTG
*
27572911 CCCACACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCC
** * * * *
27572976 AGACCGAGGGTTGTGGCAGCGGGACCGGTAGCACACAGAGGGGGATCGAGTCGATCCCCGGCTTG
193 AGACCGAGGGTTGTGGCAGCGGGACCGACAGCACACACAGGGGGACCGAGCCGATCCCCGGCTCG
* * *
27573041 CACATTATGTCTCTCCAGCCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGGCTT
258 CACATTATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTT
* * * * **
27573098 AGTCATAGGGAGTTCATTCCATGTCTAAGCCA-CAG-CCGGACCGAGGGTTGTGGCAGTGGGATC
1 AG-CATATGGAGTTCATTCCA-GTCTAAG--ATCAGATCGGACCGAGGGTTGCGGTAGCAGGATC
* * * * *
27573161 GACAGCACGCCGGGGGGATCGGGCTGATCCCCGGCTTTCGCATTCTGCCTCT-TCGGCCGGTTGA
62 GACAGCACGCAGGGGGGACCGGGCCGATCCCTGGC-TTGGCATTCTGCCTCTCT-GGCCGGTTGA
* * *
27573225 GTGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCA
125 GTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
* **
27573290 GCCAGACCGAGGGTTGTGGTAGCGGGACCGACAGCATGCACAGGGGGACC-AGGCCGATCCCCGG
190 GCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCACACACAGGGGGACCGA-GCCGATCCCCGG
* * * * * *
27573354 CTCGCGCATTATGCCTCTTCGGCCGGCTCAGCGCTCGCACGCTTCGTTTCGTGGGTTGACTT
254 CTCGCACATTATGCCTCTCCAGCCGGCTCAGCGCCCGCACGC-TCATTTCATGGGTTGACTT
* * * * * *
27573416 ATGCATATGGAGTTCATTCCCAATCTAAGATTAGATCGAACTGAGGGTTCCAGTAGCAGGATCGA
1 A-GCATATGGAGTTCATT-CCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGA
* *
27573481 CAGCACGTAGGGGGGACCGGGCCGATCCCTGGCTTGGCATTTTGCCTCTCTGGCCGGTTGAGCT-
64 CAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGGCATTCTGCCTCTCTGGCCGGTTGAG-TG
* ** * ** *
27573545 CCCGGACGCTTGTTTCGTAGGTTATCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
27573603 ATACAGAGTT
Statistics
Matches: 419, Mismatches: 71, Indels: 29
0.81 0.14 0.06
Matches are distributed among these distances:
316 12 0.03
317 310 0.74
318 92 0.22
319 5 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (314 bp):
AGCATATGGAGTTCATTCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGGCATTCTGCCTCTCTGGCCGGTTGAGTGCCC
GCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
CCGAGGGTTGTGGCAGCGGGACCGACAGCACACACAGGGGGACCGAGCCGATCCCCGGCTCGCAC
ATTATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTT
Found at i:27573611 original size:26 final size:26
Alignment explanation
Indices: 27573575--27573627 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27573565 GTTATCTTAG
*
27573575 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
27573601 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27573627 G
1 G
27573628 ATTTTGGGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27574333 original size:26 final size:26
Alignment explanation
Indices: 27574296--27574348 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27574286 GTTGACTTAG
*
27574296 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
27574322 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27574348 G
1 G
27574349 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27574769 original size:156 final size:154
Alignment explanation
Indices: 27574322--27574812 Score: 475
Period size: 156 Copynumber: 3.1 Consensus size: 154
27574312 CCCAGTCTAA
* * * * * * *
27574322 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGCTGTAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAACATCAGA-TCGACCGAGGGTTGCGGCAGTAGGATCGACA
* * * * *
27574387 GCACGCAGTGGGGATCGGACCGATCCCC-AGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
65 GCACGCAG-GGGGACCGG-GCGATCCCCGA-CTTGCGCATTATGCCTCTCCG-GCGACTGAGCGC
* * *
27574451 CTGCACGCCCGTTTCGTGGGTTGGCTTAG
126 CCGCATGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * ** * *
27574480 GCATAGGGAGTTCATT-CCATGTGTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAA-CATCAGATC-GACCGAGGGTTGCGGCAGTAGGATCGA
* * * * * *
27574543 CAGCACGCATAGGGGGACCCGGCTGGTCCCTGACTTGCGCATTATGCCTCTTCGGCCAGCTCAGC
63 CAGCACGC--AGGGGGACCGGGC-GATCCCCGACTTGCGCATTATGCCTCTCCGGCGA-CTGAGC
* * * *
27574608 ACCCGCATGCTCGTTTCATGGGTTGACTTAT
124 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAG
* * *
27574639 GCGTACAGAGTTCATTCCCAGTCTAACATCAGATCGACCGAGGGTTGCAGCAGTAGGATCGACAG
1 GCATACGGAGTTCATTCCCAGTCTAACATCAGATCGACCGAGGGTTGCGGCAGTAGGATCGACAG
* *
27574704 CACGCAGGGGGACCGGGTCGATCCCCGACTTGCGCATTGTGCCTCTCCGGTCGATTGAGCGCCCG
66 CACGCAGGGGGACCGGG-CGATCCCCGACTTGCGCATTATGCCTCTCCGG-CGACTGAGCGCCCG
27574769 CATGCTCGTTTCGTGGGTTGGCTTAG
129 CATGCTCGTTTCGTGGGTTGGCTTAG
27574795 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
27574813 ATGGCTAAGC
Statistics
Matches: 259, Mismatches: 62, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
156 85 0.33
157 6 0.02
158 81 0.31
159 81 0.31
160 6 0.02
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCCAGTCTAACATCAGATCGACCGAGGGTTGCGGCAGTAGGATCGACAG
CACGCAGGGGGACCGGGCGATCCCCGACTTGCGCATTATGCCTCTCCGGCGACTGAGCGCCCGCA
TGCTCGTTTCGTGGGTTGGCTTAG
Found at i:27574825 original size:26 final size:25
Alignment explanation
Indices: 27574795--27574922 Score: 157
Period size: 26 Copynumber: 4.9 Consensus size: 25
27574785 GTTGGCTTAG
*
27574795 GCATACGGAGTTCATTCCATGGCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
* *
27574821 GCATACAGAGTTCATTCCTAGTCTAG
1 GCATACGGAGTTCATTCC-AGTCTAA
*
27574847 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCAT-TCCAGTCTAA
* *
27574873 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCAT-TCCAGTCTAA
27574899 GCATACGGAGTTCATTCCAAGTCT
1 GCATACGGAGTTCATTCC-AGTCT
27574923 TAGATCGGAT
Statistics
Matches: 90, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
25 2 0.02
26 85 0.94
27 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:27575382 original size:26 final size:26
Alignment explanation
Indices: 27575346--27575398 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27575336 GTTGGATTAG
27575346 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27575372 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27575398 G
1 G
27575399 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27576201 original size:159 final size:158
Alignment explanation
Indices: 27575905--27576408 Score: 515
Period size: 159 Copynumber: 3.2 Consensus size: 158
27575895 CCTAGTCTAA
* * * * * ** *
27575905 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCA-AACTAGACCGAGGGTTGCAGCAGTAAAATAG
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATC-GGACCGAGGGTTGCGGCAGCAGGATCG
* * * *
27575967 GCAGCACGCAGGGGGGATCGGGGCTGATTCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAG
64 ACAGCACGCAGGGGGGATC-GGGCCGA-TCCCCGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
* *
27576032 CGCCCGCACGCCCATTTCGTTGGTTGGCTTAG
127 CGCCCGCACGCCCATTTTGTGGGTTGGCTTAG
* * * *
27576064 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TTGGACCGAGGGTTGTGGCAGC-GAGA-CTG
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGGGTTGCGGCAGCAG-GATC-G
* * * *
27576126 ACAGCATGCAGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGGTCGGCTCAG
64 ACAGCACGCAG-GGGGGATCGGGCCGATCCCC-GCTTGCGCATTCTGCCTCTCCGGTCGGCTGAG
* * *
27576191 TGCCCACACGCTCC-TTTTGTGGGTTGACTTAG
127 CGCCCGCACGC-CCATTTTGTGGGTTGGCTTAG
*** *
27576223 GCATACGGAGTTCATTCCCA-GTCTAAG-ATTGGATCGGACCGAGGGTTGCGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * *
27576286 CAGCACGCAGGGGGGACCGGCCCGATCCCCGTCTTGCGCATTCTGCCTCTCC-GTCGGTTGAGCG
65 CAGCACGCAGGGGGGATCGGGCCGATCCCCG-CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* * *
27576350 CTCGTACGCTCATTTTGTGGGTTGGCTTAG
129 CCCGCACGCCCATTTTGTGGGTTGGCTTAG
*
27576380 GCATACGGAGTTCATTCAATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
27576409 TACGAGTTCA
Statistics
Matches: 282, Mismatches: 47, Indels: 33
0.78 0.13 0.09
Matches are distributed among these distances:
156 3 0.01
157 56 0.20
158 45 0.16
159 161 0.57
160 17 0.06
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
AGCACGCAGGGGGGATCGGGCCGATCCCCGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
CGCACGCCCATTTTGTGGGTTGGCTTAG
Found at i:27576794 original size:171 final size:171
Alignment explanation
Indices: 27576488--27576803 Score: 375
Period size: 171 Copynumber: 1.8 Consensus size: 171
27576478 GATAGCACGC
* * * * *
27576488 AGGGGGACTAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGACTGAGCGCCCGCACTC
1 AGGGGGACTAGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGACCGACTCAGCACCCGCACGC
* * *
27576553 TCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATACCATGTCTAAGCCCCAGCCGGACCGAAG
66 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATACCATGTCTAAGCCCCAGCCAGACCGAAG
*
27576618 GTTGTGGTAGCAGGACCGGCAGCGGGATCGACAGCACGAAG
131 GTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGAAG
* ** * * * * *
27576659 AGGGGGACTGGGCCGATCGTCGGCTTGCGCTTTATGCCTCTTCGACTGGCTCAGCACCCGCACGC
1 AGGGGGACTAGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGACCGACTCAGCACCCGCACGC
* * * ** * *
27576724 TCATTTCATGGGTTGACTTATGCATACGGTGTTCATTCC-TAGTCTAAG-TTCGGATCAGACCGA
66 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATACCAT-GTCTAAGCCCCAG-CCAGACCGA
*
27576787 GGGTTGTGGCAGCAGGA
129 AGGTTGTGGCAGCAGGA
27576804 TTGATAGCAG
Statistics
Matches: 118, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
170 3 0.03
171 115 0.97
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (171 bp):
AGGGGGACTAGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGACCGACTCAGCACCCGCACGC
TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATACCATGTCTAAGCCCCAGCCAGACCGAAG
GTTGTGGCAGCAGGACCGGCAGCGGGATCGACAGCACGAAG
Found at i:27576939 original size:26 final size:26
Alignment explanation
Indices: 27576903--27576955 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27576893 GTTGGCTTAG
27576903 GCATACGGAGTTCAAT-CCATGTCTAA
1 GCATACGGAGTTCAATCCCA-GTCTAA
*
27576929 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
27576955 G
1 G
27576956 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:27577665 original size:26 final size:27
Alignment explanation
Indices: 27577612--27577665 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
27577602 GTTGACTTAG
27577612 GCATATTGAGTTCATCCCCCAGTCTAA
1 GCATATTGAGTTCATCCCCCAGTCTAA
*
27577639 GCATA-TGAAGTTCAT-TCCCAGTCTAA
1 GCATATTG-AGTTCATCCCCCAGTCTAA
27577665 G
1 G
27577666 ATTAGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (27 bp):
GCATATTGAGTTCATCCCCCAGTCTAA
Found at i:27577986 original size:26 final size:26
Alignment explanation
Indices: 27577956--27578008 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27577946 GTTGGCTTAG
*
27577956 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
27577982 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
27578008 G
1 G
27578009 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:27579333 original size:26 final size:26
Alignment explanation
Indices: 27579297--27579349 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27579287 ATTGACTTAG
27579297 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
27579323 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27579349 G
1 G
27579350 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27579638 original size:158 final size:156
Alignment explanation
Indices: 27579323--27579823 Score: 569
Period size: 158 Copynumber: 3.2 Consensus size: 156
27579313 CCCAGTCTAA
* * * *
27579323 GCATACGGAGTTCATTCC-TAGTCTAAGATCAGACTGGATCGAGGGTTGAGACAGCAGGATCGGC
1 GCATACGGAGTTCATTCCAT-GTCTAAG-TCAG-CTGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * **
27579387 AGCACGCAGGGGGGACCGGGCCGATCCTCGGCCTGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
63 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
*
27579452 CCGCACTC-CTGTTTCATGGGTTGGCTTAG
128 CCGCACGCTC-GTTTCATGGGTTGGCTTAG
* * *
27579481 GCATAGGGAGTTCATTCCATGTCTAAGTCCCAGCTGGACCGAGGGTTGCGGCAGCGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGT--CAGCTGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * *
27579546 GCACGCAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTCAGCTCAGCGC
64 GCACGCAG-GGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * *
27579611 CCGCACGCTCGTTT-TTGGATTGACTTAG
128 CCGCACGCTCGTTTCATGGGTTGGCTTAG
* ** ** * *
27579639 GCATACGGAGTTCATTCCCA-GTCTAAAATTGGACCAGACCAAGGGTTACGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCT-AAGTCAG-CTGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
27579703 AGCATGCAGGGGGGACCAAGCCGATCCCCAGCTTGCGCATTCTGCTTCTCCGGTCGGTTGAGCGC
63 AGCACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
** *
27579768 CTTCACGCTCGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCATGGGTTGGCTTAG
*
27579797 GCATACGGAGTTCATTCCTTGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
27579824 CATATGGAGT
Statistics
Matches: 289, Mismatches: 44, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
157 67 0.23
158 152 0.53
159 69 0.24
160 1 0.00
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGTCAGCTGGACCGAGGGTTGCGGCAGCAGGATCGACAGC
ACGCAGGGGGGACCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:27579833 original size:26 final size:26
Alignment explanation
Indices: 27579797--27579849 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27579787 GTTGGCTTAG
**
27579797 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
27579823 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27579849 G
1 G
27579850 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27580187 original size:959 final size:962
Alignment explanation
Indices: 27578321--27580240 Score: 2856
Period size: 959 Copynumber: 2.0 Consensus size: 962
27578311 CGCTCGTTTT
* *
27578321 GTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCACACAGAGTTCATTCTCAGTCTA
1 GTGGATTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCACACAGAGTTCATTCTCAGTCTA
* * ** * * *
27578386 AGATCAGATTGGACCAGGGGTTGCGGTAGCAGGATTGGCAACACGCAGGGGGGATCGAGGTGATC
66 AGATCAGACTGGACCAGGGGTTGAGACAGCAGGATCGGCAACACGCAGGGGGGACCGAGGCGATC
*
27578451 CTCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCAGCACGTCCATTTCATGGGTTGGCT
131 CTCGGCCTACGCATTCTGCCTCTCCGACCGACTGAGCGCCAGCACGTCCATTTCATGGGTTGGCT
* * *
27578516 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGATCAAGGGTTGTGGCAGCAGCACTG
196 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCAAGGGTTGCGGCAGCAGCACCG
* * * * * *
27578581 GCAGCACACAGAGGGGGACCAGGGCGATCATCGGCTTGCGTATTATGCCTCTTCGGTCGGCTCAG
261 ACAGCACACAGAGGGGGACCAGGCCGATCACCGGCTTGCGCATTATGCCTCTCCGGTCAGCTCAG
* * * * *
27578646 TGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCTAGTCTAAGATCAAA
326 CGCCCGCACGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAAA
* * * ** *
27578711 CTAGACCAAGGGTTACGATAGCAAGATCGACAGCACGCAGGGGGGGATCGGGTCGATCCCCGACT
391 CCAGACCAAGGGTTACGACAGCAAGATCGACAGCACGCAGGGGGGGACCAAGCCGATCCCCGACT
27578776 TGCGCATTCTGCCTCTCCGGTCAACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
456 TGCGCATTCTGCCTCTCCGGTCAACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
* *
27578841 ACAGAGTTTATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAATATTTTGAGCCACGGTG
521 ACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTG
* **
27578906 CACATGCTAGGCTCGGGCATGTGCTGGTACCGTATTTTTTTTCGCCCGGGGCACCATCGCTGGAG
586 CACATGCTAGGCTCGGGCATGTGCTAGTACCACATTTTTTTTCGCCCGGGGCACCATCGCTGGAG
* *
27578971 CATCACCGGAGAGCCTAACCGGCGGCATTGGGGGTTCCGGCGATTGGGGGGCCGGGGGGTGTGCG
651 CATCACCAGAGAGCCTAACCGGCGGCATTGGGGGTTCCGCCGATTGGGGGGCCGGGGGGTGTGCG
27579036 CACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
716 CACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
27579101 CGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA
781 CGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGCAACCATTAAA
**
27579166 GTGTCTGTAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCT
846 GTGTCTAAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCT
** *
27579231 GAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACCTCTACCAAATTC
911 GAATTTTTTTGCACATACCAAAAAAAATACAAGGATCACCTCTACCAAATTC
* * *
27579283 GTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC-CTAGTCT
1 GTGGATTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCACACAGAGTTCATTCTC-AGTCT
* *
27579347 AAGATCAGACTGGATC-GAGGGTTGAGACAGCAGGATCGGCAGCACGCAGGGGGGACCG-GGCCG
65 AAGATCAGACTGGACCAG-GGGTTGAGACAGCAGGATCGGCAACACGCAGGGGGGACCGAGG-CG
* * * *
27579410 ATCCTCGGCCTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCAC-TCCTGTTTCATGGGTT
128 ATCCTCGGCCTACGCATTCTGCCTCTCCGACCGACTGAGCGCCAGCACGTCC-ATTTCATGGGTT
* *
27579474 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCCC-AG-CTGGACCGAGGGTTGCGGCAGCG
192 GGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCTAGTC-GGACCAAGGGTTGCGGCAGCA
* * *
27579537 GGACCGACAGCACGCAGAGGGGGACC-GAGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTC
255 GCACCGACAGCACACAGAGGGGGACCAG-GCCGATCACCGGCTTGCGCATTATGCCTCTCCGGTC
*
27579601 AGCTCAGCGCCCGCACGCTCGTTT-TTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
319 AGCTCAGCGCCCGCACGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*** * * *
27579665 AATTGGACCAGACCAAGGGTTACGGCAGCAGGATCGACAGCATGCA-GGGGGGACCAAGCCGATC
384 AATCAAACCAGACCAAGGGTTACGACAGCAAGATCGACAGCACGCAGGGGGGGACCAAGCCGATC
* *** * **
27579729 CCC-AGCTTGCGCATTCTGCTTCTCCGGTCGGTTGAGCGCCTTCACGCTCGTTTCGTGGGTTGGC
449 CCCGA-CTTGCGCATTCTGCCTCTCCGGTCAACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGC
* *
27579793 TTAGGCATACGGAGTTCATTCCTTGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTTTGAG
513 TTAGGCATACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTTTGAG
* * * *
27579858 CCATGGTGCCCATGCTGGGCTCGGGCATGTGCTAGTGCCACA-TTTTTTTCGCCCGGGGCACCAT
578 CCACGGTGCACATGCTAGGCTCGGGCATGTGCTAGTACCACATTTTTTTTCGCCCGGGGCACCAT
*
27579922 CG-TCGGAGCATCACCAGAGAGCCTAACCGGTGGCATTGGGGGTTCCGCCGATTGGGGGGCCGGG
643 CGCT-GGAGCATCACCAGAGAGCCTAACCGGCGGCATTGGGGGTTCCGCCGATTGGGGGGCCGGG
* * * * *
27579986 GGGTTTGTGCCCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTC
707 GGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
27580051 ATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGCA
772 ATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGCA
*
27580116 ACTATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAG
837 ACCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAG
*** *
27580181 TTTTTAGCTGAATTTTTTTGCACATGTGAAAAAAAATACAGGGATCACCTCTACCAAATT
902 TTTTTAGCTGAATTTTTTTGCACATACCAAAAAAAATACAAGGATCACCTCTACCAAATT
27580241 TGGGGACAAA
Statistics
Matches: 858, Mismatches: 91, Indels: 21
0.88 0.09 0.02
Matches are distributed among these distances:
958 1 0.00
959 318 0.37
960 165 0.19
961 82 0.10
962 289 0.34
963 3 0.00
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.26
Consensus pattern (962 bp):
GTGGATTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCACACAGAGTTCATTCTCAGTCTA
AGATCAGACTGGACCAGGGGTTGAGACAGCAGGATCGGCAACACGCAGGGGGGACCGAGGCGATC
CTCGGCCTACGCATTCTGCCTCTCCGACCGACTGAGCGCCAGCACGTCCATTTCATGGGTTGGCT
TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCAAGGGTTGCGGCAGCAGCACCG
ACAGCACACAGAGGGGGACCAGGCCGATCACCGGCTTGCGCATTATGCCTCTCCGGTCAGCTCAG
CGCCCGCACGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAAA
CCAGACCAAGGGTTACGACAGCAAGATCGACAGCACGCAGGGGGGGACCAAGCCGATCCCCGACT
TGCGCATTCTGCCTCTCCGGTCAACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAT
ACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTTTGAGCCACGGTG
CACATGCTAGGCTCGGGCATGTGCTAGTACCACATTTTTTTTCGCCCGGGGCACCATCGCTGGAG
CATCACCAGAGAGCCTAACCGGCGGCATTGGGGGTTCCGCCGATTGGGGGGCCGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGCAACCATTAAA
GTGTCTAAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCT
GAATTTTTTTGCACATACCAAAAAAAATACAAGGATCACCTCTACCAAATTC
Found at i:27580555 original size:26 final size:26
Alignment explanation
Indices: 27580518--27580570 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27580508 GTTGACTTAG
*
27580518 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
27580544 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27580570 G
1 G
27580571 ATCAGACTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27581020 original size:159 final size:157
Alignment explanation
Indices: 27580544--27581048 Score: 473
Period size: 159 Copynumber: 3.2 Consensus size: 157
27580534 CCCAGTCTAA
* * ** * *
27580544 GCATACGAAGTTCATTCCCA-GTCTAAGATCAGACTTGA-TCGAGGGTTGCGAGAGCAGGATCGG
1 GCATACGGAGTTCATT-CCATGTCTAAGGTC-GACCAGACT-GAGGGTTGCGACAGGAGGATCGG
* * * * *
27580607 CAGCACGCAGGGGGGACCGGACCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCA
63 CAGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAACG
* *
27580672 CCAGCACGCCTGTTTTGTGGGTTGGCTTAG
128 CCCGCACGCTTGTTTTGTGGGTTGGCTTAG
* ** * * * * * * *
27580702 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCG-GGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGGTCGA-CCAGACTGAGGGTTGCGACAG-GAGGATCGGC
* * * * * *
27580766 AGCACGCA-GACGGGGACCAGGCCGATCCCCGGCTTGACGCATTATGCCTCTCCGATGGGCTCAG
64 AGCACGCAGGA--GGGACCGGGCCGATCCCCGGCTT-ACGCATTCTGCCTCTCCGGTCGGCTGAA
* * ** *
27580830 CGCCCGCACTCTCGTTTCATGGGTTGACTTAG
126 CGCCCGCACGCTTGTTTTGTGGGTTGGCTTAG
**
27580862 GCATACGGAGTTCATTTCCA-GTCTAAGGTCGACCAGACTGAGGGTTGCGACAGGTAGGATCGAT
1 GCATACGGAGTTCA-TTCCATGTCTAAGGTCGACCAGACTGAGGGTTGCGACAGG-AGGATCGGC
* * ** * *
27580926 AGCACGTAGGAGGGATCGGGCCGATCCTTGGCTTACGCATTCTGTCTCTCCGG-CTAGCTGAACG
64 AGCACGCAGGAGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTC-GGCTGAACG
27580990 CCCTGCACGCTTGTTTTGTGGGTTGGCTTAG
128 CCC-GCACGCTTGTTTTGTGGGTTGGCTTAG
*
27581021 GCATACAGAGTTCATTCCATGTCTAAGG
1 GCATACGGAGTTCATTCCATGTCTAAGG
27581049 ATACAGAGTT
Statistics
Matches: 273, Mismatches: 60, Indels: 27
0.76 0.17 0.08
Matches are distributed among these distances:
157 5 0.02
158 81 0.30
159 99 0.36
160 81 0.30
161 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGGTCGACCAGACTGAGGGTTGCGACAGGAGGATCGGCAG
CACGCAGGAGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGGTCGGCTGAACGCCC
GCACGCTTGTTTTGTGGGTTGGCTTAG
Found at i:27581059 original size:26 final size:26
Alignment explanation
Indices: 27581023--27581073 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27581013 TGGCTTAGGC
27581023 ATACAGAGTTCATT-CCATGTCTAAGG
1 ATACAGAGTTCATTCCCA-GTCTAAGG
27581049 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
27581074 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGG
Found at i:27581425 original size:26 final size:26
Alignment explanation
Indices: 27581389--27581441 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27581379 GTGGACTTAG
27581389 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27581415 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27581441 G
1 G
27581442 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27581763 original size:26 final size:26
Alignment explanation
Indices: 27581726--27581778 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27581716 GTTGACTTAT
*
27581726 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
27581752 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
27581778 G
1 G
27581779 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:27582061 original size:158 final size:158
Alignment explanation
Indices: 27581752--27582251 Score: 386
Period size: 158 Copynumber: 3.2 Consensus size: 158
27581742 CCCAGTCTAA
* * * ** * * * *
27581752 GCATACGGAGTTCATTCCCA-ATCTAAGATC-GAACCGGACTAAGGGTTGAGACATCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAG-ACTGGACCGAGGGTTGTGGCAGCAGGACCGA
* * * * * * * * * * *
27581815 CAGCACGTAGGAGGGACCGGGCCGATCCCTAGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGCG
64 CAGCACGCAGAAGGGACCGGGCCAATCCCTGGCTTACGCATTATACCTCTCCGACCGGCTCAGC-
* * *
27581880 CCCGCACAC-CT-GTTTCATGGGTTGGCTTAG
128 ACC-CACACGCTCATTTCGTGGGTTGGCTTAG
* * * *
27581910 GGATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGTGGCAGC-GAGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAGACTGGACCGAGGGTTGTGGCAGCAG-GACCGA
* * * * * ***
27581973 TAGCACGCAGAAGGGACCGGGTCGATCCCCT-GCTTATGCATTATACCTCTTCGGTTGGCTCAGC
64 CAGCACGCAGAAGGGACCGGGCCAAT-CCCTGGCTTACGCATTATACCTCTCCGACCGGCTCAGC
* * * *
27582037 ACCCGCACGCTCATTTCGTTGGTTGACTTAT
128 ACCCACACGCTCATTTCGTGGGTTGGCTTAG
* * * * * *
27582068 GCTTATGGAGTTCATTCCCA-GTCTAAGATCGGATTGGACCGAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGACCAGACTGGACCGAGGGTTGTGGCAGCAGGACCGAC
** * * * *
27582132 AGCACGCAGGGGGGATCGGGCCAATCCCTGGCTTACGTATTCTACCTCTCCGACCGGCTGAGCAC
65 AGCACGCAGAAGGGACCGGGCCAATCCCTGGCTTACGCATTATACCTCTCCGACCGGCTCAGCAC
* *
27582197 TCACACGCTCGTTTCGTGGGTTGGCTTAG
130 CCACACGCTCATTTCGTGGGTTGGCTTAG
*
27582226 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
27582252 TATTTTGAGC
Statistics
Matches: 264, Mismatches: 66, Indels: 24
0.75 0.19 0.07
Matches are distributed among these distances:
156 4 0.02
157 17 0.06
158 233 0.88
159 9 0.03
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAGACTGGACCGAGGGTTGTGGCAGCAGGACCGACA
GCACGCAGAAGGGACCGGGCCAATCCCTGGCTTACGCATTATACCTCTCCGACCGGCTCAGCACC
CACACGCTCATTTCGTGGGTTGGCTTAG
Found at i:27584076 original size:26 final size:26
Alignment explanation
Indices: 27584047--27584098 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
27584037 CTGATCCGAT
27584047 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27584073 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27584099 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27584454 original size:26 final size:26
Alignment explanation
Indices: 27584425--27584477 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27584415 CCGGTCCGAT
27584425 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
27584451 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27584477 C
1 C
27584478 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27584798 original size:159 final size:157
Alignment explanation
Indices: 27584450--27584887 Score: 429
Period size: 159 Copynumber: 2.8 Consensus size: 157
27584440 AACTCCGTAT
* *
27584450 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* ** * *
27584515 TCGGTCGAGAGGCAGAATGCGCAAGCCGAGGATCGACCTGATCCCCCCTGCGTGCTGTCGATCCT
66 CCGACCGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCC
*
27584580 GCTACCGCAACCCTCAGTCTGGTCTGA
131 GCTACCACAACCCTCAGTCTGGTCTGA
* ** * *
27584607 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * * *
27584671 GCCGACCGGATAGGCATAATGCGTAAGCCGAGGATCGGCCCGGTCCCCCTTTGTGTGCTGTC-AG
65 GCCGACC-GAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTGCGTGCTGTCGA-
* * ** *
27584735 TCCCGCTGCCACAATCCTTGGTCTGGT-TGGG
127 TCCCGCTACCACAACCCTCAGTCTGGTCT-GA
* * * *
27584766 GCTTACACATGGAATGAACTACC-TATGTCTAAGCCAACCCACGAAAC-AG-GCATGTGAGCGCT
1 GCTTAGACATGGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAACGAGCGTACG-G-GCGCT
* * * * * * *
27584828 CAGCCGGTCGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCTGATCCACCCTACGTGCT
63 CAGCC-GACCGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCT
27584888 ACCGATCCTA
Statistics
Matches: 223, Mismatches: 48, Indels: 19
0.77 0.17 0.07
Matches are distributed among these distances:
156 1 0.00
157 62 0.28
158 46 0.21
159 109 0.49
160 5 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGACCGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCC
GCTACCACAACCCTCAGTCTGGTCTGA
Found at i:27584961 original size:26 final size:26
Alignment explanation
Indices: 27584925--27584977 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27584915 CCGGTCCGAT
27584925 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
27584951 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27584977 C
1 C
27584978 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27586140 original size:158 final size:153
Alignment explanation
Indices: 27585680--27586152 Score: 424
Period size: 153 Copynumber: 3.0 Consensus size: 153
27585670 ATGAACTTTG
* * * * *
27585680 TATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGTGC
1 TATGCCTAAGCCAACCCACGAAACGAGTGTGC-GGTGCTCAGCCGA-CGGAGAGGCAGAATGCGC
* * *
27585745 AAGTCGGGGATCGGCCCGATCCCCTGTGCGTGCTGTCCAT-CTGCTGCTGCAACCCTCGGTCCGA
64 AAGTC-GGGATCGG-CCGGTCCCCTCTGCGTGCTGTCGATCCTGCTGC-GCAACCCTCGGTCCGA
* **
27585809 TCCGATCTTAGACTGAGAATGAACTCGG
126 TCCGATCTTAGACTGGGAATGAACTCCA
* * * * *
27585837 TATGCATAAGTCAACCCACGAAACAAGCGTGTG-GGTGC-C--CC--CGAAGAGGCATAATGCGC
1 TATGCCTAAGCCAACCCACGAAAC--GAGTGTGCGGTGCTCAGCCGACGGAGAGGCAGAATGCGC
* * * * * * * **
27585896 AAGCCGAGGATCGGCGCGGTCCCCTTCTGTGTGCTGCCGGTCCCGCTGCCACAACCTTCAATCCG
64 AAGTCG-GGATCGGC-CGGTCCCC-TCTGCGTGCTGTCGATCCTGCTG-CGCAACCCTCGGTCCG
** *
27585961 A-CTCGGGCTTAGACAT-GGAATGAACTCCC
125 ATC-CGATCTTAGAC-TGGGAATGAACTCCA
* *
27585990 TATGCCTAAGCCAACCCACGAAACGGGTGTGCAGGTGCTCAGCCGATCGGAGAGGCAGAATGCGT
1 TATGCCTAAGCCAACCCACGAAACGAGTGTGC-GGTGCTCAGCCGA-CGGAGAGGCAGAATGCGC
* * *
27586055 AAGTCGGGAATCGGCCTGGTCCCCCCTACGTGCTGTCGATCCTGTTGTCGCAACCCTCGGTCCGA
64 AAGTCGGG-ATCGGCC-GGTCCCCTCTGCGTGCTGTCGATCCTGCTG-CGCAACCCTCGGTCCGA
27586120 TCCGATCTTAGACTGGGAATGAACTCCA
126 TCCGATCTTAGACTGGGAATGAACTCCA
27586148 TATGC
1 TATGC
27586153 TTAGACTGGG
Statistics
Matches: 246, Mismatches: 49, Indels: 41
0.73 0.15 0.12
Matches are distributed among these distances:
150 2 0.01
151 39 0.16
152 12 0.05
153 63 0.26
154 5 0.02
156 3 0.01
157 25 0.10
158 58 0.24
159 39 0.16
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.19
Consensus pattern (153 bp):
TATGCCTAAGCCAACCCACGAAACGAGTGTGCGGTGCTCAGCCGACGGAGAGGCAGAATGCGCAA
GTCGGGATCGGCCGGTCCCCTCTGCGTGCTGTCGATCCTGCTGCGCAACCCTCGGTCCGATCCGA
TCTTAGACTGGGAATGAACTCCA
Found at i:27586690 original size:159 final size:157
Alignment explanation
Indices: 27586308--27586698 Score: 399
Period size: 158 Copynumber: 2.5 Consensus size: 157
27586298 ATCGGTCCTG
27586308 CTACCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTACCACAACCCTCGGTCTGGCTGGGGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACC
** * * * * * * * *
27586373 CAAAAAATGAGCGTGCGAGCATTCAGTCGATCGGAGAGGTAGAATACGCAAGCCGAGGATCGGCC
65 CATGAAACGAGCGTGCGAGCACTCAGCCAACCGAAGAAGTAGAATACGCAAGCCGAGGATCGACC
**
27586438 CGGTCCCCCCTACGTGCTATCGATCCTG
130 CGGTCCCCCCTACGTGCTATCGATCCAA
* * ** * * * * *
27586466 CTGCGACAACCCTCGGTCTGGTCT-GATCATAGACTGGGAATGAAATCTGTATGCATAAGTCAAC
1 CTACCACAACCCTCGGTCTGG-CTGGGGCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAAC
* ** * * ** *
27586530 CCATGAAACGAGCGTGCGGGTGCTGAGCCAACCGAAGAAGTATAATGTGCAAGCCGGGGATCGAC
64 CCATGAAACGAGCGTGCGAGCACTCAGCCAACCGAAGAAGTAGAATACGCAAGCCGAGGATCGAC
* *
27586595 CCGGTCCCCCTCTACGTGCT-GCTGGTCCAA
129 CCGGTCCCCC-CTACGTGCTATC-GATCCAA
* * * *
27586625 CTACCATAACCCTCGGTTTGGCTGGGGCTTAGACATGGAAGGAACTCCCTATGCCTAAGCCAACC
1 CTACCACAACCCTCGGTCTGGCTGGGGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACC
27586690 CATGAAACG
65 CATGAAACG
27586699 GGTGGGCGGG
Statistics
Matches: 183, Mismatches: 44, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.01
158 110 0.60
159 71 0.39
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
CTACCACAACCCTCGGTCTGGCTGGGGCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCC
ATGAAACGAGCGTGCGAGCACTCAGCCAACCGAAGAAGTAGAATACGCAAGCCGAGGATCGACCC
GGTCCCCCCTACGTGCTATCGATCCAA
Found at i:27587036 original size:679 final size:675
Alignment explanation
Indices: 27585657--27587053 Score: 1635
Period size: 679 Copynumber: 2.1 Consensus size: 675
27585647 AACTCCGTAT
* ** * ** * *
27585657 GCTTACACATGGAATGAACTTTGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAATGAGCGTGCGAGCACTCAG
** * * ** * *
27585722 CCGACCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCCGATCCCCTGTGCGTGCTGTCCATCT
66 CCGACCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTATCCATCT
* *
27585787 GCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTGAGAATGAACTCGGTATGCATAAGTCAAC
131 GCTGCTGCAACCCTCGGTCCGATCCGATCATAGACTGAGAATGAAATCGGTATGCATAAGTCAAC
* * * *
27585852 CCACGAAACAAGCGTGTGGGTGCCCCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCGCGGTC
196 CCACGAAACAAGCGTGCGGGTGCCCCCGAAGAAGCATAATGCGCAAGCCGAGGATCGACCCGGTC
* ** ** * * *
27585917 CCCTTCTGTGTGCTGCCGGTCCCGCTGCCACAACCTTCAATCCGACTCGGGCTTAGACATGGAAT
261 CCCCTCTACGTGCTGCCGGTCCAACTACCACAACCCTCAATCCGACTCGGGCTTAGACATGGAAG
* *
27585982 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCAGGTGCTCAGCCGATCGGAGAGGCA
326 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGGGCAGGTGCTCAGCCGAGCGGAGAGGCA
** * * * *
27586047 GAATGCGTAAGTCGGGAATCGGCCTGGTCCCCCCTACGTGCTGTCGATCCTGTTGTCGCAACCCT
391 GAATGCACAAGTCAGGAATCGGCCTGGTCCCCCCTACGTGCTGTCGATCCTATTGCCGCAA-CCA
* * *
27586112 CGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTTCGTAT
455 C-GTCCGATCCGATCCTACACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTAT
* * * *
27586177 GCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCCGATCGAAAAGG
519 GCCTAAGTCAACCCATGAAATGAGCGCGCGGGCGCTCAGCCGGCCGAAAAGGCCGACCGAAAAGG
* * * * * * * **
27586242 CATAATGTGCAAGCTGAGATCAGCCCGGTCCCCTTCTATATGCTACCGATCGCGCTATCGGTCCT
584 CATAATGCGCAAGCGGAGATCAGCCCGATCCCCCTCTACATGCTACCGATCCCGCTACCAATCCT
* **
27586307 GCTACCACAACCCTCGGTCTGGCTGGG
649 GCTACCACAACCCTCGATCCAGCTGGG
* *
27586334 GCTTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAATGAGCGTGCGAGCATTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAATGAGCGTGCGAGCACTCAG
* * * * *
27586399 TCGATCGGAGAGGTAGAATACGCAAGCCGAGGATCGGCCCGGTCCCCCCTACGTGCTATCGATCC
66 CCGACCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTATCCAT-C
* * * * *
27586464 TGCTGC-GACAACCCTCGGTCTGGTCTGATCATAGACTGGGAATGAAATCTGTATGCATAAGTCA
130 TGCTGCTG-CAACCCTCGGTCCGATCCGATCATAGACTGAGAATGAAATCGGTATGCATAAGTCA
* * * * *
27586528 ACCCATGAAACGAGCGTGCGGGTGCTGAGCCAACCGAAGAAGTATAATGTGCAAGCCGGGGATCG
194 ACCCACGAAACAAGCGTGCGGGTGC----CC--CCGAAGAAGCATAATGCGCAAGCCGAGGATCG
* * ** ** * *
27586593 ACCCGGTCCCCCTCTACGTGCTGCTGGTCCAACTACCATAACCCTCGGTTTGGCTGGGGCTTAGA
253 ACCCGGTCCCCCTCTACGTGCTGCCGGTCCAACTACCACAACCCTCAATCCGACTCGGGCTTAGA
* * *
27586658 CATGGAAGGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGGGCGGGTGGTCAGCC-AGCA
318 CATGGAAGGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGGGCAGGTGCTCAGCCGAGC-
*
27586722 GGAGAGGCAGAATGCACAAGTCAAGG-ATCGG-TTCGGTCCCCCCTA-GTTGCTGTCGATCCTAT
382 GGAGAGGCAGAATGCACAAGTC-AGGAATCGGCCT-GGTCCCCCCTACG-TGCTGTCGATCCTAT
* * * *
27586784 TGCCGTAA-CAC-T-CGATCTGATCCTACACTGGGAATGAACTCCGTATGCTTAGACTGGGGATT
444 TGCCGCAACCACGTCCGATCCGATCCTACACTGGGAATGAACTCCATATGCTTAGACTGGGGATG
* * **
27586846 AACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGCGCGGGCGCGT-AGCCGGTCGAAAATGTT
509 AACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGCGCGGGCGC-TCAGCCGGCCGAAAAGGCC
* * * * * * * *
27586910 GGCCG-AAGGGCATAATGCGCAAGTCGGGGATCAGCTCGATCCCCCTCTGCGTGTTGCCGATCCC
573 GACCGAAAAGGCATAATGCGCAAG-CGGAGATCAGCCCGATCCCCCTCTACATGCTACCGATCCC
* *
27586974 GCTACCAATCCTGTTGCCACAACCCTCGATCCAGCTGGG
637 GCTACCAATCCTGCTACCACAACCCTCGATCCAGCTGGG
*
27587013 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
27587054 CGAAATGATC
Statistics
Matches: 601, Mismatches: 105, Indels: 26
0.82 0.14 0.04
Matches are distributed among these distances:
677 106 0.18
678 94 0.16
679 202 0.34
680 2 0.00
682 4 0.01
683 4 0.01
684 187 0.31
685 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (675 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAAAAATGAGCGTGCGAGCACTCAG
CCGACCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTATCCATCT
GCTGCTGCAACCCTCGGTCCGATCCGATCATAGACTGAGAATGAAATCGGTATGCATAAGTCAAC
CCACGAAACAAGCGTGCGGGTGCCCCCGAAGAAGCATAATGCGCAAGCCGAGGATCGACCCGGTC
CCCCTCTACGTGCTGCCGGTCCAACTACCACAACCCTCAATCCGACTCGGGCTTAGACATGGAAG
GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGGGCAGGTGCTCAGCCGAGCGGAGAGGCA
GAATGCACAAGTCAGGAATCGGCCTGGTCCCCCCTACGTGCTGTCGATCCTATTGCCGCAACCAC
GTCCGATCCGATCCTACACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGC
CTAAGTCAACCCATGAAATGAGCGCGCGGGCGCTCAGCCGGCCGAAAAGGCCGACCGAAAAGGCA
TAATGCGCAAGCGGAGATCAGCCCGATCCCCCTCTACATGCTACCGATCCCGCTACCAATCCTGC
TACCACAACCCTCGATCCAGCTGGG
Found at i:27587223 original size:26 final size:26
Alignment explanation
Indices: 27587185--27587237 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27587175 TTGGTCTGAT
*
27587185 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27587211 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
27587237 C
1 C
27587238 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27588257 original size:26 final size:25
Alignment explanation
Indices: 27588216--27588267 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
27588206 GGTTCAAACT
27588216 CTTAGACTAGAATGAACTCCATATG
1 CTTAGACTAGAATGAACTCCATATG
* *
27588241 CTTAGACATGGAATGAACTCCTTATG
1 CTTAGAC-TAGAATGAACTCCATATG
27588267 C
1 C
27588268 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (25 bp):
CTTAGACTAGAATGAACTCCATATG
Found at i:27588790 original size:26 final size:26
Alignment explanation
Indices: 27588752--27588804 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27588742 CCAGTCTGAT
27588752 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27588778 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27588804 C
1 C
27588805 CTCAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27589284 original size:26 final size:26
Alignment explanation
Indices: 27589255--27589333 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
27589245 CCGGTCTGAT
*
27589255 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
27589281 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
27589307 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCTGTATG
27589333 C
1 C
27589334 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCTGTATG
Found at i:27589921 original size:160 final size:158
Alignment explanation
Indices: 27589452--27589921 Score: 382
Period size: 160 Copynumber: 2.9 Consensus size: 158
27589442 GCCGATCTCG
* * * *
27589452 CTGCCGGTCTTGCTGCCACAACCTTCGGTCTGACTGGGCTTAGACATGGAATGAACTCCGTATGC
1 CTGCCGATCTCGCTGCCACAACCCTCGGTCTGACTGGGCTTAGACATGGAATGAACTCCCTATGC
* * * * * * * *
27589517 CTAAGCCAACCCATGAAAT-GAACGTGTGGGCGCTCAGCCAGCTGGAGAGGTAGAATACGTAAGC
66 CTAAGCCAACCCATGGAATAGAGCGTGCGGGCGCTCAGCCATC-AGAGAGGCAGAATGCATAAGC
* * * *
27589581 TGAGGATCGGCCCGAT--CCCTCGTGCGTG
130 AG-GGATCGGCCCGGTCCCCCTCGTACGTA
* * ** * * * * ** *
27589609 CTGTCGATCTTGCTGCCGTAAACCTCGATCCGATCCGATCTTAGAC-TGGGAATGAACTTCCTAT
1 CTGCCGATCTCGCTGCCACAACCCTCGGTCTGA-CTGGGCTTAGACAT-GGAATGAACTCCCTAT
* * * * * * ** * * *
27589673 GCATAAGTCAACCCAT-GAA-ACGAGCGTACGGGGCACTGAATCGGTCAAAGAGGCATAATGCTT
64 GCCTAAGCCAACCCATGGAATA-GAGCGTGC-GGGCGCT-CAGCCATCAGAGAGGCAGAATGCAT
* *
27589736 AAGTCGGGGATCGGCCTGGTCCCCCTC-TACGTA
126 AAG-CAGGGATCGGCCCGGTCCCCCTCGTACGTA
*
27589769 CTGCCGGT-TCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTAT
1 CTGCCGATCT-CGCTGCCACAACCCTCGGTCTGACT-GGGCTTAGACATGGAATGAACTCCCTAT
*
27589833 GCCTAAGCCAACCCATGGAATAG-GCGTGCGGGCGCTCAGCCAATCAGAGAGGCAGAATGCACAA
64 GCCTAAGCCAACCCATGGAATAGAGCGTGCGGGCGCTCAGCC-ATCAGAGAGGCAGAATGCATAA
27589897 GCCAGGGATCGGCCCGGTTCCCCCT
128 G-CAGGGATCGGCCCGG-TCCCCCT
27589922 ACGTGCTGTT
Statistics
Matches: 234, Mismatches: 63, Indels: 29
0.72 0.19 0.09
Matches are distributed among these distances:
157 28 0.12
158 44 0.19
159 70 0.30
160 81 0.35
161 10 0.04
162 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTGCCGATCTCGCTGCCACAACCCTCGGTCTGACTGGGCTTAGACATGGAATGAACTCCCTATGC
CTAAGCCAACCCATGGAATAGAGCGTGCGGGCGCTCAGCCATCAGAGAGGCAGAATGCATAAGCA
GGGATCGGCCCGGTCCCCCTCGTACGTA
Found at i:27596296 original size:26 final size:26
Alignment explanation
Indices: 27596260--27596312 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27596250 CCGGTCCGAT
*
27596260 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
27596286 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27596312 C
1 C
27596313 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27597738 original size:159 final size:161
Alignment explanation
Indices: 27597365--27597754 Score: 382
Period size: 159 Copynumber: 2.4 Consensus size: 161
27597355 AACTCCATAT
* * *
27597365 GCTTAGACATGGAATGAACTCCGTCTGCCTAGGCCAACCCACGAAACGAGTGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
* * *
27597430 CC-GAC-AAGAGAGAAAGAATACGCAAGCCGAGGATTGACCCGGTCCCCCCCTACGTGCTGTCGA
66 CCGGTCGAAGAGAGAAAGAATACGCAAGCCGAGGATCGACCCGATCCCCCCCTACGTGCTGTCGA
* *
27597493 TCCTACTACCGCAAACCTCAGTCCGATCTGA
131 TCCCACTACCGCAAACCTCAGTCCGAGCTGA
* * ** * * ** *
27597524 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTAAACCCATGAAACAAACGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCA
* * * * * *
27597588 GCCGGTCGAAGAG-G-CATAATGCGCAAG-C-AGGCTATCGGCCCGATCCCCCTCTTCGTGCTGT
65 GCCGGTCGAAGAGAGAAAGAATACGCAAGCCGAGG--ATCGACCCGATCCCCCCCTACGTGCTGT
* * * * * ** *
27597649 CGGTCCCGCTGCCGTAACCCTCAGTTTG-GCTGGG
128 CGATCCCACTACCGCAAACCTCAGTCCGAGCT-GA
* *
27597683 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
*
27597748 TCGGTCG
66 CCGGTCG
27597755 GAGTGGTAGA
Statistics
Matches: 181, Mismatches: 43, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.02
158 4 0.02
159 165 0.91
160 4 0.02
161 5 0.03
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (161 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAG
CCGGTCGAAGAGAGAAAGAATACGCAAGCCGAGGATCGACCCGATCCCCCCCTACGTGCTGTCGA
TCCCACTACCGCAAACCTCAGTCCGAGCTGA
Found at i:27598245 original size:26 final size:26
Alignment explanation
Indices: 27598207--27598259 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27598197 CTGGTTTGAT
27598207 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27598233 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27598259 C
1 C
27598260 CTCAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27599309 original size:26 final size:25
Alignment explanation
Indices: 27599272--27599322 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 25
27599262 GCTCAAAATA
27599272 TTAGACTGGAATGAACTCCGTATGC
1 TTAGACTGGAATGAACTCCGTATGC
*
27599297 TTAGACATGGAATGAACTTCGTATGC
1 TTAGAC-TGGAATGAACTCCGTATGC
27599323 CTAAGCCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (25 bp):
TTAGACTGGAATGAACTCCGTATGC
Found at i:27599688 original size:159 final size:156
Alignment explanation
Indices: 27599295--27600051 Score: 549
Period size: 159 Copynumber: 4.8 Consensus size: 156
27599285 AACTCCGTAT
* * * * *
27599295 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAACCACGAAAC-GAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAG-GCGTAC-GG-GCTCA
* * * * * * * * * *
27599359 GTCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGTTGTCGATC
63 GTCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGGTC
* ** * ** * *
27599424 CTGCTATCGCAACCCTCAAT-TCAGTCT-GA
128 CCGCTGCCACAACCCTCGGTCT-GGT-TGGG
* * ** * * * * **
27599453 TCTTAGA-TTGGGAATGAACTCTGTATGCATAAGTCAACCCAAGAAAC-GAGTGTACGAGCGCAG
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAG-GCGTACG-G-GCTC
* * * * * * * *
27599516 AGTCGGTCAAAGAGGCATAATGCGTAAGCCAGGGATAGGCCCGATCCCCCTCTGTGTGCTGCTGG
62 AGTCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCC-CTGCGTGCTGCCGG
*
27599581 TCCCACTGCCACAACCCTCGGTCTGGTTGGG
126 TCCCGCTGCCACAACCCTCGGTCTGGTTGGG
* * * *
27599612 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAATCCATGAAACCGGCGTCCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTAC-GG-GCTCAG
* * *
27599677 TCAGCCGAAGAGGCAGAATGCGCAAGTCAGGGATTGGCCCGATCCCCCCTGCGTGCTGCCGATCC
64 TCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGGTCC
* * * *
27599742 TGCTGCCACAACCCTCAGT-TCGGTTCGA
129 CGCTGCCACAACCCTCGGTCT-GGTTGGG
* * * * * * * * * *
27599770 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATAAGTGTTCGGGCACTGT
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCTCAGT
* * * * ** * *
27599834 GCCGATCGTAGAGGCATAATGCGCAAGCTGGGGATCGGCCC-AGTCCCCCTCTACGTGTTGCCGG
65 -CAG-CCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGA-TCCCCC-CTGCGTGCTGCCGG
* **
27599898 TCCCGCTGCCACAACCCTCGGTCCGACTGGG
126 TCCCGCTGCCACAACCCTCGGTCTGGTTGGG
* *
27599929 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGGG--CTCAG
* * * * *
27599994 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTG
64 TCAGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTG
27600052 TAGATCCTGG
Statistics
Matches: 463, Mismatches: 117, Indels: 38
0.75 0.19 0.06
Matches are distributed among these distances:
156 5 0.01
157 9 0.02
158 210 0.45
159 230 0.50
160 7 0.02
161 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCTCAGTC
AGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGGTCCCG
CTGCCACAACCCTCGGTCTGGTTGGG
Found at i:27599798 original size:158 final size:156
Alignment explanation
Indices: 27599296--27600114 Score: 594
Period size: 158 Copynumber: 5.2 Consensus size: 156
27599286 ACTCCGTATG
* * *
27599296 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACG-GCGTAC-GGCGCTCAGT
* * * * * * * *
27599361 CGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGTTGTCGATCCT
64 CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCT
** * * *
27599426 GCTATCGCAACCCTCAATTCAG-TCTGAT
129 GCTGCCACAACCCTCAGTTCGGTTC-GAT
* * * * * **
27599454 CTTAGA-TTGGGAATGAAC-TCTGTATGCATAAGTCAACCCAAGAAACGAGTGTACGAGCGCAGA
1 CTTAGACAT-GGAATGAACTTC-GTATGCCTAAGCCAACCCATGAAACG-GCGTACG-GCGCTCA
* * * * * * * * * *
27599517 GTCGGTCAAAGAGGCATAATGCGTAAGCCAGGGATAGGCCCGATCCCCCTCTGTGTGCTGCTGGT
62 GTCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTGCCGAT
** * * **
27599582 CCCACTGCCACAACCCTC-GGTCTGGTTGGGG
126 CCTGCTGCCACAACCCTCAGTTC-GGTTCGAT
* * * * * *
27599613 CTTAGACATGGAATGAACTCCCTATGCCTAAACCAATCCATGAAACCGGCGTCCAGGTGCTCAGT
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAA-CGGCGTAC-GGCGCTCAGT
* * *
27599678 CAGCCGAAGAGGCAGAATGCGCAAGTCAGGGATTGGCCCGATCCCCCCTGCGTGCTGCCGATCCT
64 CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCT
27599743 GCTGCCACAACCCTCAGTTCGGTTCGAT
129 GCTGCCACAACCCTCAGTTCGGTTCGAT
* ** * * * *
27599771 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATAAGTGTTCGG-GCACTGT
1 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAA-CGGCGTACGGCGCTCAGT
* * * * * * * *
27599834 GCCGATCGTAGAGGCATAATGCGCAAGCTGGGGATCGGCCC-AGTCCCCCTCTACGTGTTGCCGG
64 -CAG-CCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCC-CTGCGTGCTGCCGA
* * * ** * **
27599898 TCCCGCTGCCACAACCCTCGGTCCGACTGGGG
125 TCCTGCTGCCACAACCCTCAGTTCGGTTCGAT
* * * **
27599930 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAAC
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAAC-GGCGTAC-GGCGCTCAGT
* * * **
27599995 CAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTAGATCCT
64 CAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCT
* ** * * * *
27600060 GGTGCCGTAACCCTCGGTCCGATCCGAT
129 GCTGCCACAACCCTCAGTTCGGTTCGAT
27600088 CTTAGAC-TGGGAATGAAC-TCTGTATGC
1 CTTAGACAT-GGAATGAACTTC-GTATGC
27600115 TTAGACTGGG
Statistics
Matches: 509, Mismatches: 129, Indels: 46
0.74 0.19 0.07
Matches are distributed among these distances:
156 5 0.01
157 12 0.02
158 253 0.50
159 226 0.44
160 11 0.02
161 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGGCGTACGGCGCTCAGTCA
GCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCTGC
TGCCACAACCCTCAGTTCGGTTCGAT
Found at i:27599883 original size:317 final size:317
Alignment explanation
Indices: 27599295--27600114 Score: 1009
Period size: 317 Copynumber: 2.6 Consensus size: 317
27599285 AACTCCGTAT
* * * *
27599295 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAACCACGAAA-CGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACCG-GCGTACGGGCGCTCA
* * * *
27599359 GTCGGCCGGAGAGGCAAAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACGTGTTGTCGATC
65 GTCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATC
** * * *
27599424 CTGCTATCGCAACCCTCAATTCAG-TCTGATCTTAGATTGGGAATGAACTCTGTATGCATAAGTC
130 CTGCTGCCGCAACCCTCAGTTCGGTTC-GATCTTAGACTGGGAATGAACTCTGTATGCATAAGTC
* * * * *
27599488 AACCCAAGAAACGAGTGTACGAGCGCAGAGTCGGTCAAAGAGGCATAATGCGTAAGCCAGGGATA
194 AACCCAAGAAACAAGTGTACGAGCACAGAGCCGATCAAAGAGGCATAATGCGCAAGCCAGGGATA
** * * **
27599553 GGCCCGATCCCCCTCTGTGTGCTGCTGGTCCCACTGCCACAACCCTCGGTCTGGTTGGG
259 GGCCCGATCCCCCTCTACGTGCTGCCGGTCCCACTGCCACAACCCTCGGTCCGACTGGG
* * * * *
27599612 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAATCCATGAAACCGGCGTCCAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACCGGCGTACGGGCGCTCAG
* * * * *
27599677 TCAGCCGAAGAGGCAGAATGCGCAAGTCAGGGATTGGCCCGATCCCCCCTGCGTGCTGCCGATCC
66 TCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* *
27599742 TGCTGCCACAACCCTCAGTTCGGTTCGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCA
131 TGCTGCCGCAACCCTCAGTTCGGTTCGATCTTAGACTGGGAATGAACTCT-GTATGCATAAGTCA
* * * * * * ** ** *
27599806 ACCCATGAAATAAGTGTTCGGGCACTGTGCCGATCGTAGAGGCATAATGCGCAAGCTGGGGATCG
195 ACCCAAGAAACAAGTGTACGAGCACAGAGCCGATCAAAGAGGCATAATGCGCAAGCCAGGGATAG
* *
27599871 GCCC-AGTCCCCCTCTACGTGTTGCCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGG
260 GCCCGA-TCCCCCTCTACGTGCTGCCGGTCCCACTGCCACAACCCTCGGTCCGACTGGG
* * * *
27599929 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACCGGCGTACGGGCGCTCAG
* * * *
27599994 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGTAGATCC
66 TCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * * * * *
27600059 TGGTGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGC
131 TGCTGCCGCAACCCTCAGTTCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGC
27600115 TTAGACTGGG
Statistics
Matches: 426, Mismatches: 72, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
316 2 0.00
317 419 0.98
318 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (317 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACCGGCGTACGGGCGCTCAG
TCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTCAGTTCGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCATAAGTCAA
CCCAAGAAACAAGTGTACGAGCACAGAGCCGATCAAAGAGGCATAATGCGCAAGCCAGGGATAGG
CCCGATCCCCCTCTACGTGCTGCCGGTCCCACTGCCACAACCCTCGGTCCGACTGGG
Found at i:27600124 original size:26 final size:26
Alignment explanation
Indices: 27600088--27600140 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27600078 CCGATCCGAT
27600088 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
27600114 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
27600140 C
1 C
27600141 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:27600721 original size:11 final size:11
Alignment explanation
Indices: 27600705--27600730 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
27600695 ACTCCCCAGT
27600705 GATGCTCCGAC
1 GATGCTCCGAC
27600716 GATGCTCCGAC
1 GATGCTCCGAC
27600727 GATG
1 GATG
27600731 GTACCCCAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (11 bp):
GATGCTCCGAC
Found at i:27600838 original size:26 final size:26
Alignment explanation
Indices: 27600800--27600852 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27600790 GGCTCAAACT
*
27600800 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
27600826 CTTAGACAT-GGAATGAACTCCGAATG
1 CTTAGAC-TGGGAATGAACTCCGAATG
27600852 C
1 C
27600853 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:27602097 original size:158 final size:157
Alignment explanation
Indices: 27601589--27604098 Score: 1031
Period size: 159 Copynumber: 15.6 Consensus size: 157
27601579 AGAATGGGCA
* * * * * * * * * *
27601589 TGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCACAAGCTGGGGACCGACCCAGTGCCCCCTAC
1 TGCGGGCGCTCAACCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGGTCCCCCCTGC
** * * * ** * *
27601654 GTGCTGTCGATCCTACTGCCACAACCCTCGATCCGG-TCCGATCTTTGAC-TGGGAATGAACTTC
66 GTGCTGTCG-TCCCGCTGCCACAACCCTCGGTCTGGCT-GGGGCTTAGACGT-GGAATGAACTCC
* * **
27601717 GTATGCCTAAGTCAACCCATGAAATGAGCA
128 GTATGCCTAAGCCAACCCATGAAACGAGTG
** * * * * * * * * *** *
27601747 TATGGGTGCTCAGCAGACTGGAGAGGCAGAATGCGCAAGTCAGGGACCGGTCCAGTCCCCCCTTG
1 TGCGGGCGCTCAACCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGGTCCCCCC-TG
* ** * * ** * *
27601812 GGTGCTGTCGATCCTACTGCCACAACCCTCGGTCCGG-TCCGATCTTAGAC-TAGAAATGAACTT
65 CGTGCTGTCG-TCCCGCTGCCACAACCCTCGGTCTGGCT-GGGGCTTAGACGT-GGAATGAACTC
* * * * * *
27601875 TGTATGCCTAAGTCAACCCACGGAATGAGCG
127 CGTATGCCTAAGCCAACCCATGAAACGAGTG
* * * * * * * * * *
27601906 TTCGGGCACTGAGCCGGCCGAAGAGGCATAATACGCAAGTCGGGGATCAAGCTGGTCCCCCTCTG
1 TGCGGGCGCTCAACCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGGTCCCCC-CTG
* * * * *
27601971 CGTGCTGTCGTGCCGCTGCCAAAACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATTAACTCTGT
65 CGTGCTGTCGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGAACTCCGT
27602036 ATGCCTAAGCCAACCCATGAAACGAGTG
130 ATGCCTAAGCCAACCCATGAAACGAGTG
* * ** * * *
27602064 TGCGGGTGCTCAACCGACTGGAGAGAAAAAATACGCAAGCCGGGGATCGACCTGGTCCCCCCTGC
1 TGCGGGCGCTCAACCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGGTCCCCCCTGC
* * * * * * ** * * *
27602129 GTGCTGCCATTCCTGCTGTCGCAACCTTCATTCCGACTGGGGCTTAGACATGGAATGAACTCCGT
66 GTGCTGTC-GTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGAACTCCGT
27602194 ATGCCTAAGCCAACCCATGAAACGAGTG
130 ATGCCTAAGCCAACCCATGAAACGAGTG
* * * * * * * **
27602222 TGTGGGCACTCAACCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATTACCCCGG-CCCCCCTTT
1 TGCGGGCGCTCAACCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGGTCCCCCCTGC
* * * *
27602286 GCGCTGTCGGTCCCGCTGCCACAATCCTCGATCCT-GCTGGGGCTTAGACGTGGAATGAACTCCC
66 GTGCTGTC-GTCCCGCTGCCACAACCCTCGGT-CTGGCTGGGGCTTAGACGTGGAATGAACTCCG
* * * *
27602350 TATGCCTAAGCCAACCCACGAAATGGGCG
129 TATGCCTAAGCCAACCCATGAAACGAGTG
* * * * * *
27602379 TGCGGGCGCTCAACC-AGCCGGAGAGGCAGAATGCGTAAGTCGGGGACCGACCCAGTCCCCCCTT
1 TGCGGGCGCTCAACCGA-CCGGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGGTCCCCCC-T
* * * **
27602443 GCGTACTGTCGATCCTGCTGCCAGAACCCTCGGTCTGGTCT-GATCTTAGAC-TGGGAATGAACT
64 GCGTGCTGTCG-TCCCGCTGCCACAACCCTCGGTCTGG-CTGGGGCTTAGACGT-GGAATGAACT
* * * *
27602506 CTGTATGCCTAAGTCAACCCACGAAATGAGTG
126 CCGTATGCCTAAGCCAACCCATGAAACGAGTG
* * * * * *** * *
27602538 TGCGGGCGCTGAGCCGACCGAAGAGGCATAATACGCAAGCCGAGGATTGGCCCGATCCCCCTCAG
1 TGCGGGCGCTCAACCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGGTCCCCC-CTG
* ** * * *
27602603 CATGCTACCAGTCCCGCTGCCACAACCCTTGGT-TCGGTTGGGGCTTAGACATGGAATGAACTCC
65 CGTGCTGTC-GTCCCGCTGCCACAACCCTCGGTCT-GGCTGGGGCTTAGACGTGGAATGAACTCC
* * *
27602667 CTATGCCTAAGCCAACCGATGAAACG-GACG
128 GTATGCCTAAGCCAACCCATGAAACGAG-TG
* * * ** *
27602697 TGCGGGCACTCAACCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCACGGTCCCCCCTGC
1 TGCGGGCGCTCAACCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGGTCCCCCCTGC
** * * * **** * ** *
27602762 GTGCTACCGATCCTGCTGCCACAACCCTTGATCCAATTCGATCTTAGAC-TAGGAATGAACTTCG
66 GTGCTGTCG-TCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACGT-GGAATGAACTCCG
* * * *** **
27602826 TATG-CTTAGACTAGGGATGGACTCCGTA-TG
129 TATGCCTAAGCCAACCCAT-GA-AACG-AGTG
*** * * * * * ** * *
27602856 CCTAAGTCAAAC-CATGAAACGAGCGTGTGGGTGCTTAATCGACCGGAGAGGCCGGTTAGAGAGG
1 --T--G-CGGGCGC-TCAACCGACCG-GAGAG-GCAGAAT--A-CGCA-A-GCCGG---G-GA-T
* * * * ** * * * * **
27602920 CAAAATGCACAGAATGCGCTATCGATCCTGCTGCTGGTCCTGTTGCCACAACCCTCGGTCCAG-T
48 C--AA--C-CCG-GTCCCCCCT-G--CGTGCTG-TCGTCCCGCTGCCACAACCCTCGGTCTGGCT
* ** * * * *
27602984 CCGATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCG
103 -GGGGCTTAGACGT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTG
* * * ** * * * **
27603040 TGCGGGTGCTCAACAGACTGGAGAGGCAGAATGTGCAAGTCAGGGACCGGCCCGGTCCCCCCTTG
1 TGCGGGCGCTCAACCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGGTCCCCCC-TG
* * * * * ** * *
27603105 GGTGCTGTCGATCCTGCTGCCACAACCCTCGGTC-CGATCCGATCTTAGAC-TGAAAATGAACTT
65 CGTGCTGTCG-TCCCGCTGCCACAACCCTCGGTCTGGCT-GGGGCTTAGACGTG-GAATGAACTC
* * * *
27603168 CATATGCCTAAGTCAACCCACGAAATGAGCT-
127 CGTATGCCTAAGCCAACCCATGAAACGAG-TG
* * * * * * * ** *
27603199 TTCGAGCACTGAGCCGGCCGGAGAGGCATAATACGCAAGCCGGGGATCAAGTCGGTCCCCCTTTG
1 TGCGGGCGCTCAACCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGGTCCCCC-CTG
* * * * * * * **
27603264 TGTGCTGTCATGCCACTGCCAGAACCCTCGGTCTGGCTGGGGCTTAGATGTGGAATGAAGTCTAT
65 CGTGCTGTCGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGAACTCCGT
*
27603329 ATGCCTAAGCCAACCCATGAAATGAGTG
130 ATGCCTAAGCCAACCCATGAAACGAGTG
* * * * * ** * * * * **** ** *
27603357 TGTGGGTGCTCAACTGGCTGGAGAGAAAAAATATGCAAACCGAGGATTGGTCTAGTCCCCCTTGC
1 TGCGGGCGCTCAACCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGGTCCCCCCTGC
* * ** * *
27603422 GTGCTGCCATTCCTGCCGCTGGTCCTGCTGCCGCAACCCTCATTCCGACTGGGGCTTAGACGTGG
66 GTGCTG-------T----C--GTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGG
*
27603487 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCG
118 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTG
* * * * * * * ** *
27603527 TGTGGGCACTCAACCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATTACCCCGACCCCCCTCTA
1 TGCGGGCGCTCAACCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGGTCCCCC-CTG
* ** *
27603592 CGTGCTGTCGATCCCGCTGCCGCAACCCTCAATCCT-GCTGGGGCTTAGATGTGGAATGAACTCC
65 CGTGCTGTCG-TCCCGCTGCCACAACCCTCGGT-CTGGCTGGGGCTTAGACGTGGAATGAACTCC
* * * *
27603656 CTATGCCTAAGCCAACCCATGAAATGGGCG
128 GTATGCCTAAGCCAACCCATGAAACGAGTG
* * * * * * ** *
27603686 TGCGGGCGCTCAGCC-AGTCGGAGAGGCAGAATGCGTAAGTCAGGGATCGGCCCAGTCCCCCCTT
1 TGCGGGCGCTCAACCGA-CCGGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGGTCCCCCC-T
* * * ** *
27603750 ACGTACTGTCGATCCTGCTGCCACAACCCTCGGTCTGGTCT-GATCTTAGAC-TAAGAATGAACT
64 GCGTGCTGTCG-TCCCGCTGCCACAACCCTCGGTCTGG-CTGGGGCTTAGACGT-GGAATGAACT
* * * * *
27603813 CTGTATGCCTAAGTCAACCCACGAAATGAGCG
126 CCGTATGCCTAAGCCAACCCATGAAACGAGTG
* ** * * * * * * * *** * *
27603845 TGCGAGCATTGAGCCGGCCGGAGAGGCATAATGCCCAAGCCGAGGATTGGCCCGATCCCCCTTAG
1 TGCGGGCGCTCAACCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGGTCCCCCCT-G
* ** ** * * * *
27603910 CATGCTACCGGTCCCATTACCACAACCCTTGGT-TCGGTTGGGGCTTAGACATGGAATGAACTCC
65 CGTGCTGTC-GTCCCGCTGCCACAACCCTCGGTCT-GGCTGGGGCTTAGACGTGGAATGAACTCC
* * *
27603974 CTATGCCTAAGCCAACCGATGAAACG-GACG
128 GTATGCCTAAGCCAACCCATGAAACGAG-TG
* * * ** *
27604004 TGCGGGCACTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGGGAATCGGCACGGTCCCCCCTGC
1 TGCGGGCGCTCAACCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGGTCCCCCCTGC
* * *
27604069 GTCCTATCGATCCTGCTGCCACAACCCTCG
66 GTGCTGTCG-TCCCGCTGCCACAACCCTCG
27604099 ATCCAATTCG
Statistics
Matches: 1773, Mismatches: 482, Indels: 194
0.72 0.20 0.08
Matches are distributed among these distances:
156 1 0.00
157 154 0.09
158 472 0.27
159 865 0.49
160 13 0.01
161 5 0.00
162 3 0.00
163 3 0.00
164 12 0.01
165 3 0.00
166 4 0.00
167 1 0.00
168 3 0.00
169 4 0.00
170 111 0.06
171 13 0.01
172 3 0.00
173 1 0.00
174 3 0.00
175 2 0.00
176 1 0.00
177 5 0.00
178 3 0.00
179 7 0.00
180 3 0.00
181 1 0.00
182 5 0.00
183 2 0.00
184 3 0.00
185 58 0.03
186 9 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (157 bp):
TGCGGGCGCTCAACCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCAACCCGGTCCCCCCTGC
GTGCTGTCGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACGTGGAATGAACTCCGTA
TGCCTAAGCCAACCCATGAAACGAGTG
Found at i:27602720 original size:318 final size:319
Alignment explanation
Indices: 27601705--27604137 Score: 1713
Period size: 318 Copynumber: 7.6 Consensus size: 319
27601695 TCTTTGACTG
* * * * * ** * * * *
27601705 GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAA-TGAGCATATGGGTGCTCAGCAGACTGGA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGA-CGTGCGGGCGCTCAACCGACCGGA
* * * * * *
27601769 GAGGCAGAATGCGCAAGTCAGGGACCGGTCCAGTCCCCCCTTGGGTGCTGTCGATCCTACTGCCA
65 GAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTTGCGTGCTGTCGATCCTGCTGCCA
* * *
27601834 CAACCCTCGGTCCGGTC-CGATCTTAGACTAGAAATGAACTTTGTATGCCTAAGTCAACCCACGG
130 CAACCCTCGGTCCGGTCTCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGA
* * * * * * *
27601898 AATGAGCGTTCGGGCACTGAGCCGGCCGAAGAGGCATAATACGCAAGTCGGGGATCAAG-CTGGT
195 AATGAGTGTGCGGGCACTGAGCCGGCCGGAGAGGCATAATACGCAAGCCGGGGAT-TAGCCCGAT
* * * *
27601962 CCCCCTCTGCGTGCTGTC-GTGCCGCTGCCAAAACCCTCGG-TCTGGCTGGGGCTTAGATGT
259 CCCCCTCAGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTTC-GGCTGGGGCTTAGACGT
* ** * * *
27602022 GGAATTAACTCTGTATGCCTAAGCCAACCCATGAAAC-GAGTGTGCGGGTGCTCAACCGACTGGA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGA-CGTGCGGGCGCTCAACCGACCGGA
** * * * ** * *
27602086 GAGAAAAAATACGCAAGCCGGGGATCGACCTGGTCCCCCC-TGCGTGCTG-CCATTCCTGCTGTC
65 GAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTTGCGTGCTGTCGA-TCCTGCTGCC
* * ** * * ** * * *
27602149 GCAACCTTCATTCC-GACTGGGGCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCAT
129 ACAACCCTCGGTCCGGTCTCGATCTTAGACTA-GGAATGAACTCTGTATGCCTAAGTCAACCCAC
* * * * ** * * * * *
27602212 GAAACGAGTGTGTGGGCACTCAACCGATCGGAGAGGCAGAATGCGCAAGCTGGGGATTACCCCGG
193 GAAATGAGTGTGCGGGCACTGAGCCGGCCGGAGAGGCATAATACGCAAGCCGGGGATTAGCCCGA
* ** * * * *
27602277 CCCCCCTTTGC--GCTGTCGGTCCCGCTGCCACAATCCTCGATCCTGCTGGGGCTTAGACGT
258 TCCCCCTCAGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACGT
* * *
27602337 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAACC-AGCCGGA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCTCAACCGA-CCGGA
* * * * *
27602401 GAGGCAGAATGCGTAAGTCGGGGACCGACCCAGTCCCCCCTTGCGTACTGTCGATCCTGCTGCCA
65 GAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTTGCGTGCTGTCGATCCTGCTGCCA
* * *
27602466 GAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGA
130 CAACCCTCGGTCCGGTCTCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGA
* * * * *
27602530 AATGAGTGTGCGGGCGCTGAGCCGACCGAAGAGGCATAATACGCAAGCCGAGGATTGGCCCGATC
195 AATGAGTGTGCGGGCACTGAGCCGGCCGGAGAGGCATAATACGCAAGCCGGGGATTAGCCCGATC
* ** * * * *
27602595 CCCCTCAGCATGCTACCAGTCCCGCTGCCACAACCCTTGGTTCGGTTGGGGCTTAGACAT
260 CCCCTCAGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACGT
* *
27602655 GGAATGAACTCCCTATGCCTAAGCCAACCGATGAAACGGACGTGCGGGCACTCAACCGACCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCTCAACCGACCGGAG
* * * **
27602720 AGGTAGAATGCGCAAGCCGGGGATCGGCACGGTCCCCCC-TGCGTGCTACCGATCCTGCTGCCAC
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTTGCGTGCTGTCGATCCTGCTGCCAC
* * ** * * * *** * *
27602784 AACCCTTGATCCAAT-TCGATCTTAGACTAGGAATGAACT-TCGTATG-CTTAGACTAGGGATGG
131 AACCCTCGGTCCGGTCTCGATCTTAGACTAGGAATGAACTCT-GTATGCCTAAGTCAACCCACGA
* ** * * * ** * * * *
27602846 ACTCCGTATGCCTAAGTCAAACCATGAAACGAG-CGTGTGGGTGCTTAATCGACCGGAGAGGCCG
195 AATGAGTGTG-C--GGGC--A-C-TGAGCCG-GCCG-GAGAG-GCATAAT--A-CGCA-A-GCC-
** * * ** * * * *
27602910 GTTAGAGAGGCAAAATGCACAGAATGCGCTATCGATCCTGCTG-CTGGTCCTGTTGCCACAACCC
244 ----G-G-GG-ATTA-GC-CCG-AT-CCCCCTC-AGCGTGCTGTC-GGTCCCGCTGCCACAACCC
* * * **
27602974 TCGGTCCAG-TCCGATCTTAGAC-T
296 TCGGTTCGGCT-GGGGCTTAGACGT
* * * * * * *
27602997 GGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAA-TGAGCGTGCGGGTGCTCAACAGACTGG
1 -GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGA-CGTGCGGGCGCTCAACCGACCGG
* * * * * *
27603061 AGAGGCAGAATGTGCAAGTCAGGGACCGGCCCGGTCCCCCCTTGGGTGCTGTCGATCCTGCTGCC
64 AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTTGCGTGCTGTCGATCCTGCTGCC
* * *
27603126 ACAACCCTCGGTCCGATC-CGATCTTAGACT-GAAAATGAACT-TCATATGCCTAAGTCAACCCA
129 ACAACCCTCGGTCCGGTCTCGATCTTAGACTAG-GAATGAACTCT-GTATGCCTAAGTCAACCCA
* * * *
27603188 CGAAATGAGCT-TTCGAGCACTGAGCCGGCCGGAGAGGCATAATACGCAAGCCGGGGATCAAG-T
192 CGAAATGAG-TGTGCGGGCACTGAGCCGGCCGGAGAGGCATAATACGCAAGCCGGGGAT-TAGCC
* ** * * * * * *
27603251 CGGTCCCCCTTTGTGTGCTGTC-ATGCCACTGCCAGAACCCTCGG-TCTGGCTGGGGCTTAGATG
255 CGATCCCCCTCAGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTTC-GGCTGGGGCTTAGACG
27603314 T
319 T
* ** * * * * * * *
27603315 GGAATGAAGTCTATATGCCTAAGCCAACCCATGAAA-TGAGTGTGTGGGTGCTCAACTGGCTGGA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGA-CGTGCGGGCGCTCAACCGACCGGA
** * ** * * * * *
27603379 GAGAAAAAATATGCAAACCGAGGATTGGTCTAGT-CCCCCTTGCGTGCTGCCATTCCTGCCGCTG
65 GAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTTGCGTGCTG-------T----C-G
* * ** * * ** *
27603443 GTCCTGCTGCCGCAACCCTCATTCC-GACTGGGGCTTAGACGT-GGAATGAACTCCGTATGCCTA
118 ATCCTGCTGCCACAACCCTCGGTCCGGTCTCGATCTTAGAC-TAGGAATGAACTCTGTATGCCTA
* * * * * * * * * *
27603506 AGCCAACCCATGAAACGAGCGTGTGGGCACTCAACCGGCCGGAGAGGCAGAATGCGCAAGCTGGG
182 AGTCAACCCACGAAATGAGTGTGCGGGCACTGAGCCGGCCGGAGAGGCATAATACGCAAGCCGGG
* * * * ** * *
27603571 GATTACCCCGACCCCCCTCTA-CGTGCTGTCGATCCCGCTGCCGCAACCCTCAATCCTGCTGGGG
247 GATTAGCCCGATCCCCCTC-AGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTTCGGCTGGGG
*
27603635 CTTAGATGT
311 CTTAGACGT
* * * *
27603644 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGCC-AGTCGGA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCTCAACCGA-CCGGA
* * * * *
27603708 GAGGCAGAATGCGTAAGTCAGGGATCGGCCCAGTCCCCCCTTACGTACTGTCGATCCTGCTGCCA
65 GAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTTGCGTGCTGTCGATCCTGCTGCCA
* *
27603773 CAACCCTCGGTCTGGTCT-GATCTTAGACTAAGAATGAACTCTGTATGCCTAAGTCAACCCACGA
130 CAACCCTCGGTCCGGTCTCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGA
* * * * * * *
27603837 AATGAGCGTGCGAGCATTGAGCCGGCCGGAGAGGCATAATGCCCAAGCCGAGGATTGGCCCGATC
195 AATGAGTGTGCGGGCACTGAGCCGGCCGGAGAGGCATAATACGCAAGCCGGGGATTAGCCCGATC
* * ** ** * * * *
27603902 CCCCTTAGCATGCTACCGGTCCCATTACCACAACCCTTGGTTCGGTTGGGGCTTAGACAT
260 CCCCTCAGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACGT
* *
27603962 GGAATGAACTCCCTATGCCTAAGCCAACCGATGAAACGGACGTGCGGGCACTCAACCGACCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCTCAACCGACCGGAG
* * * * *
27604027 AGGCAGAATGCGCAAGCCGGGAATCGGCACGGTCCCCCC-TGCGTCCTATCGATCCTGCTGCCAC
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTTGCGTGCTGTCGATCCTGCTGCCAC
* **
27604091 AACCCTCGATCCAAT-TCGATCTTAGACTAGGAATGAACTCTGTATGC
131 AACCCTCGGTCCGGTCTCGATCTTAGACTAGGAATGAACTCTGTATGC
27604138 TTAGACTGGG
Statistics
Matches: 1616, Mismatches: 411, Indels: 178
0.73 0.19 0.08
Matches are distributed among these distances:
314 7 0.00
315 121 0.07
316 271 0.17
317 309 0.19
318 378 0.23
319 12 0.01
320 1 0.00
321 1 0.00
322 1 0.00
323 11 0.01
324 6 0.00
325 7 0.00
326 1 0.00
327 4 0.00
328 120 0.07
329 104 0.06
330 18 0.01
331 3 0.00
332 1 0.00
333 3 0.00
334 1 0.00
335 1 0.00
336 6 0.00
337 6 0.00
338 8 0.00
339 3 0.00
340 3 0.00
341 2 0.00
342 10 0.01
343 123 0.08
344 61 0.04
345 12 0.01
346 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (319 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCTCAACCGACCGGAG
AGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTTGCGTGCTGTCGATCCTGCTGCCAC
AACCCTCGGTCCGGTCTCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAA
ATGAGTGTGCGGGCACTGAGCCGGCCGGAGAGGCATAATACGCAAGCCGGGGATTAGCCCGATCC
CCCTCAGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTTCGGCTGGGGCTTAGACGT
Found at i:27602833 original size:26 final size:26
Alignment explanation
Indices: 27602804--27602856 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27602794 CCAATTCGAT
*
27602804 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
27602830 CTTAGACTAGGGATGGACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27602856 C
1 C
27602857 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27604580 original size:502 final size:502
Alignment explanation
Indices: 27603762--27604671 Score: 1224
Period size: 502 Copynumber: 1.8 Consensus size: 502
27603752 GTACTGTCGA
** *
27603762 TCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAAGAATGAACTCTGTATGCCTAAGT
1 TCCTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTAAGAATGAACTCTGTATGCCTAAGT
* * * * *
27603827 CAACCCACGAAATGAGCGTGCGAGCATTGAGCCGGCCGGAGAGGCATAATGCCCAAGCCGAGGAT
66 CAACCCACGAAACGAGCGTGAGAGCACTGAGCCGACCGGAGAGGCATAATGCACAAGCCGAGGAT
*** * * * * **
27603892 TGGCCCGATCCCCCTTAGCATGCTACCGGTCCCATTACCACAACCCTTGGTTCGGTTGGGGCTTA
131 CAACCCGATCCCCCTTAGCATGCTACCAGTCCCACTACCACAACCCTCGGTCCGACTGGGGCTTA
* * *
27603957 GACATGGAATGAACTCCCTATGCCTAAGCCAACCGATGAAACGGACGTGCGGGCACTCAACCGAC
196 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGACGTGCGAGCACTCAACCGAC
* * * * *
27604022 CGGAGAGGCAGAATGCGCAAGCCGGGAATCGGCACGGTCCCCCCTGCGTCCTATCGATCCTGCTG
261 CGGAGAGGCAGAATGCGCAAGCAGGGAATCAGCACGGTCCCCCCTACATCCTATCGATCCTGCTA
*
27604087 CCACAACCCTCGATCCAAT-TCGATCTTAGACT-AGGAATGAAC-TCTGTATGCTTAGACTGGGG
326 CCACAACCCTCGATCCAGTCT-GATCTTAGACTCA-GAATGAACTTC-GTATGCTTAGACTGGGG
* *
27604149 ACGGACTCCGTATGCCTAAGTCAAACCATGAAATGAGCATGCGGGTGCTCAATCGATCGGAGAGG
388 ACGAACTCCATATGCCTAAGTCAAACCATGAAATGAGCATGCGGGTGCTCAATCGATCGGAGAGG
27604214 TCAGTTGGAGAGGCAAAATGCACAGAATGCGCTATCGATCCTGCTGCTGG
453 TCAGTTGGAGAGGCAAAATGCACAGAATGCGCTATCGATCCTGCTGCTGG
** *
27604264 TCCTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGT
1 TCCTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTAAGAATGAACTCTGTATGCCTAAGT
* * * * *
27604329 CAACCCATGAAACGAGCGT-ATAGGCGCTGAGCCGACCGGAGAGGCATAATGCACAAGCTGGGGA
66 CAACCCACGAAACGAGCGTGAGA-GCACTGAGCCGACCGGAGAGGCATAATGCACAAGCCGAGGA
* * *
27604393 TCAACCCGATCCCCCTCTAG-GTGCTGCCAGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCT
130 TCAACCCGATCCCCCT-TAGCATGCTACCAGTCCCACTACCACAACCCTCGGTCCGACTGGGGCT
* * *
27604457 TATACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGCAAAAGG-TGTGCGAGCGCTCAACC
194 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG-AAAAGGACGTGCGAGCACTCAACC
* * * *
27604521 -AGCTGGAGAGGCAGAATGCGCAAGCTAGGG-ATCAGCCCGGTCCTCCCTACATGCTATCGATCC
258 GA-CCGGAGAGGCAGAATGCGCAAGC-AGGGAATCAGCACGGTCCCCCCTACATCCTATCGATCC
* * * *
27604584 TGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGATTCAGAATGAACTTCGTATGCTTAGACTGG
321 TGCTACCACAACCCTCGATCCAGTCTGATCTTAGACTCAGAATGAACTTCGTATGCTTAGACTGG
* *
27604649 GGATGAACTCTATATGCCTAAGT
386 GGACGAACTCCATATGCCTAAGT
27604672 TAACCCACGA
Statistics
Matches: 348, Mismatches: 52, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
501 2 0.01
502 331 0.95
503 15 0.04
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (502 bp):
TCCTGCTGCCACAACCCTCGGTCCAGTCCGATCTTAGACTAAGAATGAACTCTGTATGCCTAAGT
CAACCCACGAAACGAGCGTGAGAGCACTGAGCCGACCGGAGAGGCATAATGCACAAGCCGAGGAT
CAACCCGATCCCCCTTAGCATGCTACCAGTCCCACTACCACAACCCTCGGTCCGACTGGGGCTTA
GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAAGGACGTGCGAGCACTCAACCGAC
CGGAGAGGCAGAATGCGCAAGCAGGGAATCAGCACGGTCCCCCCTACATCCTATCGATCCTGCTA
CCACAACCCTCGATCCAGTCTGATCTTAGACTCAGAATGAACTTCGTATGCTTAGACTGGGGACG
AACTCCATATGCCTAAGTCAAACCATGAAATGAGCATGCGGGTGCTCAATCGATCGGAGAGGTCA
GTTGGAGAGGCAAAATGCACAGAATGCGCTATCGATCCTGCTGCTGG
Found at i:27605671 original size:158 final size:158
Alignment explanation
Indices: 27605350--27605693 Score: 401
Period size: 158 Copynumber: 2.2 Consensus size: 158
27605340 AACTCCATAT
* **
27605350 GCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * ** *
27605415 TCGGTCGGAGAGGCAGAATGCGCAAGCTCGGGATCGGCACGGTCCCCCTCTATGTGCTGTCGGTC
66 TCGGTCGGAAAGGCAGAATGCACAAGCTCGGGATCGGCACGGTCCCCCTCTACGTGCTACCGATC
* * *
27605480 CTACTGCCACAACCCTCGGTCCGGTTGG
131 CTACTACCACAACCCTCGATCCGGTTGA
* * *
27605508 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* *
27605573 -CTGG-CAGGAAAGGCAGAATGCACCAGCTGGGGATCGGC-CAGGTCCCCC-CTACGTGCTACCG
66 TC-GGTC-GGAAAGGCAGAATGCACAAGCTCGGGATCGGCAC-GGTCCCCCTCTACGTGCTACCG
* *** *
27605634 ATCCTGCTATGGCAACCCTCGATTCGGTTTGA
128 ATCCTACTACCACAACCCTCGATCCGG-TTGA
*
27605666 TCTTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
27605694 TTAGACTGGT
Statistics
Matches: 157, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
157 33 0.21
158 124 0.79
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
TCGGTCGGAAAGGCAGAATGCACAAGCTCGGGATCGGCACGGTCCCCCTCTACGTGCTACCGATC
CTACTACCACAACCCTCGATCCGGTTGA
Done.