Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 290 of 402
Found at i:27605708 original size:26 final size:26
Alignment explanation
Indices: 27605667--27605719 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27605657 TCGGTTTGAT
*
27605667 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
27605693 CTTAGACTGGTG-ATGAACTACGTATG
1 CTTAGACTGG-GAATGAACTACGTATG
27605719 C
1 C
27605720 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:27606126 original size:158 final size:158
Alignment explanation
Indices: 27605856--27606378 Score: 586
Period size: 158 Copynumber: 3.3 Consensus size: 158
27605846 CCTGCTGCCA
* * *
27605856 CAACCCTCCGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
* * *
27605921 ACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGTAAGTCGAGGACCGACCTGGTCC
66 ACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGGTCC
*
27605986 CCCCTACGTGCTGTCGATCCTGCTATCG
131 CCCCTACGTGCTGCCGATCCTGCTATCG
* * * * *
27606014 TAACCCTCAGTCCGGTCTGATCTTAGGCTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAA
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
** ** * * * * * *
27606079 ATAAGCGTGCACGTGCTGAGCCGGTCGGGGAGGTATAATGCGCAAGTCGGGGATCGA-CTCGATC
66 ACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCT-GGTC
* * * *
27606143 CCCCTCTACGTGCTGCCGGTCCCGCTACCA
130 CCCC-CTACGTGCTGCCGATCCTGCTATCG
* * *
27606173 CAACCCTCGGTCCGG-CTGGGGT-TTAGACAT-GGAATGAACTCCCTATGCCTAAACCAACCCAC
1 CAACCCTCGGTCCGGTCT--GATCTTAGAC-TGGGAATGAACTCCATATGCCTAAGCCAACCCAC
* * * * * * * *
27606235 GAAACGGGCGTGCGGGCGCTCAGCTGGCCAGAGAGGCAGAATGCGCAAGTTGGGGATTGGCCCGG
63 GAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGG
* * * *
27606300 TCCCCCCTGCGTGCTGCCAATCCTACTGTCG
128 TCCCCCCTACGTGCTGCCGATCCTGCTATCG
* *
27606331 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
27606379 TTAGACTGGG
Statistics
Matches: 294, Mismatches: 62, Indels: 18
0.79 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 167 0.57
159 118 0.40
160 4 0.01
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (158 bp):
CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAA
ACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGGTCC
CCCCTACGTGCTGCCGATCCTGCTATCG
Found at i:27606381 original size:26 final size:26
Alignment explanation
Indices: 27606352--27606404 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27606342 CCGGTCCGAT
27606352 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27606378 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27606404 C
1 C
27606405 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27607113 original size:26 final size:26
Alignment explanation
Indices: 27607075--27607127 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27607065 GGCTCAAACT
* *
27607075 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
27607101 CTTAGACAT-GGAATGAAATCCATATG
1 CTTAGAC-TGGGAATGAAATCCATATG
27607127 C
1 C
27607128 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:27607335 original size:159 final size:158
Alignment explanation
Indices: 27607100--27607403 Score: 391
Period size: 159 Copynumber: 1.9 Consensus size: 158
27607090 AACTCCGTAT
* *
27607100 GCTTAGACATGGAATGAAATCCATATGCCTAAGCCAACCCATGCAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAAATCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** * * * * *
27607165 CCGGCTGGAGAGGCAAAAAGCGTAAGCC-GAGAATGGGC-CTGGTCCCCCTCTGCGTGCTGCCGA
66 CCAACCGGAGAGGCAAAAAGCGCAAGCCGGAGAA-CGACAC-GGTCCCCC-CTGCGTACTGCCGA
27607228 TCCCGCTGCCACAACCCTTAATCCAGCTGGG
128 TCCCGCTGCCACAACCCTTAATCCAGCTGGG
*
27607259 GCTTAGACATGGAAT-AAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCGCTC
1 GCTTAGACATGGAATGAAA-TCCATATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCGCTC
* * * * *
27607322 AGCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGAACGACACGGTCCCCCCTGTGTACTGTCGAT
64 AGCCAACCGGAGAGGCAAAAAGCGCAAGCCGGAGAACGACACGGTCCCCCCTGCGTACTGCCGAT
*
27607387 CCTGCTGCCACAACCCT
129 CCCGCTGCCACAACCCT
27607404 CAGTCCGGTT
Statistics
Matches: 125, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
158 32 0.26
159 88 0.70
160 5 0.04
ACGTcount: A:0.25, C:0.32, G:0.27, T:0.16
Consensus pattern (158 bp):
GCTTAGACATGGAATGAAATCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCAACCGGAGAGGCAAAAAGCGCAAGCCGGAGAACGACACGGTCCCCCCTGCGTACTGCCGATCC
CGCTGCCACAACCCTTAATCCAGCTGGG
Found at i:27607454 original size:26 final size:26
Alignment explanation
Indices: 27607418--27607470 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27607408 CCGGTTCGAT
27607418 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
27607444 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27607470 C
1 C
27607471 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27608122 original size:158 final size:156
Alignment explanation
Indices: 27607946--27608446 Score: 467
Period size: 159 Copynumber: 3.2 Consensus size: 156
27607936 ACTCTGTATG
* *
27607946 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * *
27608011 CGGCTGGAGAGGTAGAATGCACAAACCGAGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCCT
66 C-GATGGAGAGGTAGAATGCACAAGCCGGGGATCGACCCGGT-CCCCCTACGTGCTGTCGATCCT
*
27608076 ACTGTCGCAACCTTCGGTTTGATCTGAT
129 ACTGTCGCAACCTTCGGTCTGATCTGAT
* * * *
27608104 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTTCGGGTGCTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
* * * *
27608168 CCAGAGGGAGA-GTCATAATGCACAAGCCGGGGATC-AGCTCGGTCCCCCTCAGGGTGCTGTCGA
65 CC-GATGGAGAGGT-AGAATGCACAAGCCGGGGATCGA-CCCGGTCCCCCT-A-CGTGCTGTCGA
* * * * **
27608231 TCCCGA-TGCCACAACCCTT-GGTCTG-GCTGGGG
125 T-CCTACTGTCGCAA-CCTTCGGTCTGATCT-GAT
* * * * * * *
27608263 CTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATGCGGGTGCTCATC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
* * * * * * * * *
27608328 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATAGGCCCGATCCCCCTGCATGCTGTCGATCTTG
66 CGAT-GGAGAGGTAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCTACGTGCTGTCGATCCTA
* * * *
27608393 CTGTCGTAACCCTCAGTCTGATCCGAT
130 CTGTCGCAACCTTCGGTCTGATCTGAT
*
27608420 CTTAGAC-TGGGAATGAACTCCTTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
27608447 TTAGACATGG
Statistics
Matches: 270, Mismatches: 57, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
156 5 0.02
157 54 0.20
158 93 0.34
159 109 0.40
160 9 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
CGATGGAGAGGTAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCTACGTGCTGTCGATCCTAC
TGTCGCAACCTTCGGTCTGATCTGAT
Found at i:27608301 original size:159 final size:158
Alignment explanation
Indices: 27607945--27608307 Score: 389
Period size: 158 Copynumber: 2.3 Consensus size: 158
27607935 AACTCTGTAT
* *
27607945 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTAAG
* **
27608010 CCGGCTGGAGAGGTAGAATGCACAAACCGAGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
66 CCAGAGGGAGAGGTAGAATGCACAAACCGAGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
* * * * *
27608075 TACTGTCGCAACCTTCGGTTTGATCTGA
131 GACTGCCACAACCTTCGGTCTGAGCTGA
* * ** *
27608103 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTTCGGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTAA
* * * * *
27608167 GCCAGAGGGAGA-GTCATAATGCACAAGCCGGGGATC-AGCTCGGT-CCCCCTCAGGGTGCTGTC
65 GCCAGAGGGAGAGGT-AGAATGCACAAACCGAGGATCGA-CCCGGTCCCCCCT-A-CGTGCTGTC
*
27608229 GATCCCGA-TGCCACAACCCTT-GGTCTG-GCTGGG
126 GAT-CCGACTGCCACAA-CCTTCGGTCTGAGCT-GA
* * *
27608262 GCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAACCCACGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
27608308 TGGGCATGCG
Statistics
Matches: 170, Mismatches: 26, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
157 10 0.06
158 90 0.53
159 62 0.36
160 8 0.05
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGTGCTAAG
CCAGAGGGAGAGGTAGAATGCACAAACCGAGGATCGACCCGGTCCCCCCTACGTGCTGTCGATCC
GACTGCCACAACCTTCGGTCTGAGCTGA
Found at i:27608458 original size:26 final size:26
Alignment explanation
Indices: 27608420--27608472 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27608410 CTGATCCGAT
*
27608420 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27608446 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27608472 C
1 C
27608473 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27608645 original size:26 final size:26
Alignment explanation
Indices: 27608616--27608668 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27608606 TTGGTCTGAT
27608616 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
27608642 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
27608668 C
1 C
27608669 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:27608777 original size:26 final size:26
Alignment explanation
Indices: 27608748--27608800 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27608738 CCGGTCTGAT
*
27608748 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27608774 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
27608800 C
1 C
27608801 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27609763 original size:26 final size:26
Alignment explanation
Indices: 27609727--27609779 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27609717 CCGATCTGAT
*
27609727 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27609753 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27609779 C
1 C
27609780 CGAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27610498 original size:159 final size:159
Alignment explanation
Indices: 27610107--27610557 Score: 457
Period size: 159 Copynumber: 2.8 Consensus size: 159
27610097 CCGGTCTGAT
*
27610107 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAC-AAA-ATGAGTGTGCGGGCGCTCA
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACA-GAGCGTGCGGGCGCTCA
* *
27610170 GCCGGTCGGAGAGGCAGAATGCGCAAGTCA-GGGACCGACCCGATCCCCCCCTGCGTGCTGTCGA
64 GCCGGTCGGAGAGGCAGAATGCGCAAG-CAGGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGA
* * * * *
27610234 TCCTGTTACCGCAACCCTCGGTCCAATTCAAT
128 TCCTGCTACCACAACCCTAGGTCCAACTCAAG
* * * *
27610266 CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-GAGCGTACGGGTGCTGAG
1 CTTAGACTG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCGCTCAG
** * * * *** *
27610330 CCAATCGGAGAGGCATAATGCACAAGCAGGGGATCGGCCCGGTCCCTTTCTGCGTGCTGTCGGTC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATC
* * ** *
27610395 CTGCTATCATAACCCTAGGTCCGGCT-AGGG
130 CTGCTACCACAACCCTAGGTCCAACTCA-AG
* * *
27610425 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GCGTGCAGGCGCTTAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCGCTCAG
* * * * ** * **
27610489 CTGGCCGGAGAGGCAGAATCCGCAAGCCGGGGATCGGCTTGGT-CCCCCCTGCGTGCTACCGATC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATC
27610553 CTGCT
130 CTGCT
27610558 GCCGTAACCT
Statistics
Matches: 237, Mismatches: 48, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
158 24 0.10
159 207 0.87
160 6 0.03
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (159 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATCC
TGCTACCACAACCCTAGGTCCAACTCAAG
Found at i:27611353 original size:26 final size:26
Alignment explanation
Indices: 27611315--27611367 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27611305 GGCTCAAACT
27611315 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27611341 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27611367 C
1 C
27611368 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27611685 original size:24 final size:26
Alignment explanation
Indices: 27611658--27611705 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
27611648 CTGATTCGAT
*
27611658 CTTAGACT-GG-ATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27611682 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
27611706 AGCCTAAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.38
25 2 0.10
26 11 0.52
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27612345 original size:158 final size:158
Alignment explanation
Indices: 27612026--27612367 Score: 379
Period size: 158 Copynumber: 2.2 Consensus size: 158
27612016 TAACCCTCGG
* * * * *
27612026 TTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCAACGAAATGAGCGTTCGGGTGCTGAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGCGCTCAGCC
* * * * *
27612091 GGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCAGATCCCCTCTGCATGCTGTCGGTCCA
66 AGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGATCCCCTCTGCATGCTGCCGATCCA
* * *
27612156 CTGCCACAACCCTCTATCCGGCTGGGGC
131 CTGCCACAACCCTCGATCCGGCTCGAGC
* * *
27612184 TTAGGCAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACTG-GCGTGCGGGCGCTCAG
1 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAA-TGAGCGTGCGGGCGCTCAG
* *
27612247 CCAGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAG-TCCCC-CATGCATGCTGCCGAT
64 CCAGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGATCCCCTC-TGCATGCTGCCGAT
*** * * * *
27612310 CTTGTTGTCGCAACCCTCGATCTGG-TCCGATC
128 C-CACTGCCACAACCCTCGATCCGGCT-CGAGC
27612342 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
27612368 TTAGACTTGG
Statistics
Matches: 151, Mismatches: 27, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
156 1 0.01
157 20 0.13
158 127 0.84
159 3 0.02
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGTGCGGGCGCTCAGCC
AGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGATCCCCTCTGCATGCTGCCGATCCA
CTGCCACAACCCTCGATCCGGCTCGAGC
Found at i:27612370 original size:26 final size:26
Alignment explanation
Indices: 27612341--27612393 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27612331 CTGGTCCGAT
27612341 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACTTGGG-ATGAACTCCGTATG
*
27612367 CTTAGACTTGGGATGAACTTCGTATG
1 CTTAGACTTGGGATGAACTCCGTATG
27612393 C
1 C
27612394 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTTGGGATGAACTCCGTATG
Found at i:27612736 original size:26 final size:26
Alignment explanation
Indices: 27612707--27612759 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27612697 TCGATCTGAT
*
27612707 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGA-TAGGGAATGAACTCCGTATG
*
27612733 CTTAGATATGGAATGAACTCCGTATG
1 CTTAGATAGGGAATGAACTCCGTATG
27612759 C
1 C
27612760 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCGTATG
Found at i:27613204 original size:26 final size:26
Alignment explanation
Indices: 27613163--27613215 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27613153 CTGGTCTGAT
*
27613163 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
27613189 CTTAGACTAGGG-ATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
27613215 C
1 C
27613216 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27614270 original size:26 final size:26
Alignment explanation
Indices: 27614239--27614294 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
27614229 CCGGTCTGAT
*
27614239 CTTAGACTGGGAATGAACTCCGTCTG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27614265 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27614291 CTTA
1 CTTA
27614295 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27614487 original size:26 final size:26
Alignment explanation
Indices: 27614449--27614501 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27614439 CGGTTCTGAT
27614449 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27614475 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
27614501 C
1 C
27614502 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27614954 original size:158 final size:155
Alignment explanation
Indices: 27614475--27614976 Score: 477
Period size: 158 Copynumber: 3.2 Consensus size: 155
27614465 ACTCCGTATG
* *
27614475 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATACGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGC-TTCGGGTGCTCAG
* * * * * *
27614539 CTGGGCGGAGAGGCAGAATGCGCAAGTCGGGGACCAGCCCAGTCCCTCCCTGCGTACTGTTGATC
64 C-CGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCC-CCCTGCGTGCTGCTGATC
** *
27614604 CTATTACCACAACCCTCGGTCCGGTCCGAT
127 CTGCTACCACAACCCTCGGTCC-GTCTGAT
* * *
27614634 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCATTCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGC-TTCGGGTGCTCAGC
* * * * * * * * *
27614699 CGACCGGAGAGGCATAATGAGCAAGCCGGGGATCGGCCCAATCCCCTCTACGTGCTACTGGTCCC
65 CG-CCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCTGCGTGCTGCTGATCCT
* * **
27614764 GCTACCACAACCCTCGATCCGACTGGGG
129 GCTACCACAACCCTCGGTCCGTCT-GAT
* ** ** *
27614792 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCTTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCTT-CGGGTGCTCAG
* * * * * * * *
27614856 CCAGTCAGAGAGGCGGAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGTGTGTTGCCGATCC
64 CC-GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCTGCGTGCTGCTGATCC
* *
27614921 TGCTGCCGCAACCCTCGGTCCAGTCTGAT
128 TGCTACCACAACCCTCGGTCC-GTCTGAT
* *
27614950 CTTAGGCTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
27614977 TTCGACTGGG
Statistics
Matches: 274, Mismatches: 61, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 171 0.62
159 98 0.36
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (155 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCTTCGGGTGCTCAGCC
GCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCCTGCGTGCTGCTGATCCTGC
TACCACAACCCTCGGTCCGTCTGAT
Found at i:27615489 original size:158 final size:159
Alignment explanation
Indices: 27615145--27615489 Score: 373
Period size: 160 Copynumber: 2.2 Consensus size: 159
27615135 TCTGGCTGGG
**
27615145 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATTAAACGAGCGTGCGGGCGCTAA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAA
* * * * * *
27615209 GCCGACCGAAAAGGTTGAATGCGTAAGCCGAGGATCGGCTCGGTCCCCCTCTGCATGCTGTCGGA
65 GCCGACCGAAAAGATAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTCCGA
* *
27615274 CCCGCTACCACAACCCTCGATCCGACTGGG
130 CCCGCTACCACAACCCTCGATCCGACTCGA
*
27615304 GCTTAGAC-GTGGAATGAACTGCC-TATGCCTAAGCCAACCCACGAAACGGAGCGTGCGGGTGCT
1 GCTTAGACTG-GGAATGAACT-CCGTATGCCTAAGCCAACCCACGAAAC-GAGCGTGCGGGCGCT
* * * * *
27615367 CAGCCGATCGGAGAGATAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTGCGTGC-TGCTGA
63 AAGCCGACCGAAAAGATAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCT-C-TGCATGCTG-
* * * **
27615431 TCCTA-CTG-TA-C-CAACCCTCGGTCCGGTTCGA
125 TCCGACCCGCTACCACAACCCTCGATCCGACTCGA
*
27615462 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
27615490 TTAGACTAGG
Statistics
Matches: 155, Mismatches: 22, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
157 2 0.01
158 37 0.24
159 42 0.27
160 60 0.39
161 8 0.05
162 6 0.04
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAG
CCGACCGAAAAGATAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTCCGAC
CCGCTACCACAACCCTCGATCCGACTCGA
Found at i:27615492 original size:26 final size:26
Alignment explanation
Indices: 27615463--27615518 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
27615453 CCGGTTCGAT
*
27615463 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
27615489 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
27615515 CTTA
1 CTTA
27615519 AGTCAACCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:27616592 original size:26 final size:26
Alignment explanation
Indices: 27616554--27616606 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27616544 CGGATCCGAT
27616554 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27616580 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
27616606 C
1 C
27616607 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27617096 original size:26 final size:26
Alignment explanation
Indices: 27617055--27617107 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27617045 TTGATCCGAT
*
27617055 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27617081 CTTAGACTA-GAGATGAACTCCGTATG
1 CTTAGACTAGGA-ATGAACTCCGTATG
27617107 C
1 C
27617108 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27618102 original size:26 final size:26
Alignment explanation
Indices: 27618073--27618125 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27618063 CCGGTTCAAT
27618073 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
27618099 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27618125 C
1 C
27618126 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27618298 original size:26 final size:26
Alignment explanation
Indices: 27618269--27618321 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27618259 TCGGTCCGAT
*
27618269 CTTAGAC-TGGAATTGAACTCCGTATG
1 CTTAGACATGGAA-TGAACTCCATATG
27618295 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
27618321 C
1 C
27618322 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:27618640 original size:159 final size:158
Alignment explanation
Indices: 27618452--27618787 Score: 352
Period size: 159 Copynumber: 2.1 Consensus size: 158
27618442 CTAGTCCGAT
** * * * * * * *
27618452 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCAATGAAACGAGCGTTCGGGCGCTGAGT
1 CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGAGTGCGGGCACTCAGC
* * * * * * * *
27618517 TGGTCAGAGAGGCATAATACGCAAGCTAGGGATCGGTTCGGTCCCCCTCTGTGTGCTTCCGATCC
66 CGGTCAGAGAGGCAGAATACACAAGCCAGGGATAGGCTCGGTCCCCC-CTGCGTGCTACCGATCC
*
27618582 TGCTGCCACAACCCTCTGTCCGACTGGGG
130 TACTGCCACAACCCTCTGTCCGACTGGGG
* *
27618611 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGAGTGCGGGCACTCAG
1 CTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGAGTGCGGGCACTCAG
* * * * *
27618675 CCGGTCGGAGAGGTAGAATGCACAAGCCGGGGATAGGCTCGGTGCCCCCTGCGTGCTACCGATCC
65 CCGGTCAGAGAGGCAGAATACACAAGCCAGGGATAGGCTCGGTCCCCCCTGCGTGCTACCGATCC
* * * **
27618740 TACTGCCGCAACCCTCGGTCTGATCT-GAT
130 TACTGCCACAACCCTCTGTCCGA-CTGGGG
*
27618769 CTTAGACTGGGAATGAACT
1 CTTAGACTAGGAATGAACT
27618788 TCGCATGCTT
Statistics
Matches: 143, Mismatches: 31, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
158 53 0.37
159 90 0.63
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAACGAGAGTGCGGGCACTCAGC
CGGTCAGAGAGGCAGAATACACAAGCCAGGGATAGGCTCGGTCCCCCCTGCGTGCTACCGATCCT
ACTGCCACAACCCTCTGTCCGACTGGGG
Found at i:27618810 original size:26 final size:26
Alignment explanation
Indices: 27618769--27618821 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27618759 CTGATCTGAT
27618769 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTTCGCATG
*
27618795 CTTAGACT-GGAGATGAACTTCGTATG
1 CTTAGACTGGGA-ATGAACTTCGCATG
27618821 C
1 C
27618822 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGCATG
Found at i:27619171 original size:26 final size:26
Alignment explanation
Indices: 27619142--27619194 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27619132 CTGGTCCGAT
27619142 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
27619168 CTTAGGCATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27619194 C
1 C
27619195 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27619422 original size:26 final size:26
Alignment explanation
Indices: 27619384--27619436 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27619374 GGCTCAAAAT
27619384 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27619410 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27619436 C
1 C
27619437 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27620082 original size:25 final size:26
Alignment explanation
Indices: 27620036--27620085 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
27620026 CTAGTTCGAT
27620036 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
27620062 CTTAGACTAGG-ATGAACTCTGTAT
1 CTTAGACTAGGAATGAACTCTGTAT
27620086 TCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:27621128 original size:159 final size:157
Alignment explanation
Indices: 27620782--27621140 Score: 407
Period size: 158 Copynumber: 2.3 Consensus size: 157
27620772 AAATCCGTAT
* * * * *
27620782 GCTTATACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACAAGCGTGCTGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACAAGCATGCAGGCGCTAAA
** * * * ** *
27620847 CCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCCTGCATGCTGTCGATCC
65 CCGACCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCATGCTGCCGATCC
* * * *
27620912 TGCTGCCACAACCCTTGGTCCGGTCAAA
130 CGCTACCACAACCCTCGGTCCGCTCAAA
* * *
27620940 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCATGCAGGTGCTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACAAGCATGCAGGCGCTAA
* * *
27621004 ACCGACCGAAAAGGCATAATGTGCAAGCCGGGGATTGGCCCAGTCCCCCTCTGCATGCTGCCGAT
64 ACCGACCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCC-CTGCATGCTGCCGAT
***
27621069 CCCGCTACCACAACCCTCGGTCCGACT-GGG
128 CCCGCTACCACAACCCTCGGTCCG-CTCAAA
*
27621099 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCAC
27621141 AAAATGGGCG
Statistics
Matches: 166, Mismatches: 30, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.01
158 91 0.55
159 72 0.43
160 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACAAGCATGCAGGCGCTAAAC
CGACCGAAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCCTGCATGCTGCCGATCCC
GCTACCACAACCCTCGGTCCGCTCAAA
Found at i:27621288 original size:26 final size:26
Alignment explanation
Indices: 27621259--27621310 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27621249 CAGTCTGATT
* *
27621259 TTAGATTGGGAATGAACTTCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
27621285 TTAGACTGGGGATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
27621311 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:27622015 original size:26 final size:26
Alignment explanation
Indices: 27621977--27622029 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27621967 GGCTCAAAAT
27621977 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27622003 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27622029 C
1 C
27622030 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27622302 original size:159 final size:159
Alignment explanation
Indices: 27622002--27622358 Score: 404
Period size: 159 Copynumber: 2.2 Consensus size: 159
27621992 AACTCCGTAT
* *
27622002 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CTAACCCACGAAACGAGAGTGCCGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGAGTGCAGGCGCTCA
* * * * *
27622066 GCAGATCGAAGAGGCAGAATGGACAAGTCAGGGATTGACCCGGTCCCCTCCTGCGTGCTGTCGAT
65 GCAGACCGAAGAGGCAGAATGGACAAGTCAGGGATCGACCCAGTCCCCTCCTACGTGCTGCCGAT
* * *
27622131 CCTGCTATCACAACCCTCGGTCTGATCT-GA
130 CCTGCTACCACAACCCTCGATCTG-GCTGGA
* * * * *
27622161 TCTTATAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCAGGCGCTCA
* * *
27622225 GCCGGCCGAAGAGGCATAATGTG-CAAGTC-GAGGATCGACCCAGTCCCC-CTCTACGTGCTGCC
65 GCAGACCGAAGAGGCAGAATG-GACAAGTCAG-GGATCGACCCAGTCCCCTC-CTACGTGCTGCC
* * *
27622287 GGT-CTCGCTGCCACAACCCTCGATCTGGCTGGG
127 GATCCT-GCTACCACAACCCTCGATCTGGCTGGA
*
27622320 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACC
27622359 TACAAAATGG
Statistics
Matches: 165, Mismatches: 25, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
158 7 0.04
159 155 0.94
160 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCAGGCGCTCAG
CAGACCGAAGAGGCAGAATGGACAAGTCAGGGATCGACCCAGTCCCCTCCTACGTGCTGCCGATC
CTGCTACCACAACCCTCGATCTGGCTGGA
Found at i:27622374 original size:159 final size:158
Alignment explanation
Indices: 27622002--27622562 Score: 385
Period size: 159 Copynumber: 3.5 Consensus size: 158
27621992 AACTCCGTAT
* *
27622002 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CTAACCCACGAAACGAGA-GTGCCGGTGCTC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAA-G-GACGTGCAGGCGCTC
* * * * *
27622065 AGCAGATCGAAGAGGCAGAATGGACAAGTCAGGGATTGACCCGGTCCCCTCCTGCGTGCTGTCGA
63 AGCAGACCGAAGAGGCAGAATGGACAAGTCAGGGATCGACCCAGTCCCCTCCTACGTGCTGCCGA
* * *
27622130 TCCTGCTATCACAACCCTCGGTCTGATCTGA
128 TCCTGCTACCACAACCCTCGATCTGAGCTGA
* * * * *
27622161 TCTTATAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGA-CGTGCAGGCGCTCA
* * *
27622225 GCCGGCCGAAGAGGCATAATGTG-CAAGTC-GAGGATCGACCCAGTCCCC-CTCTACGTGCTGCC
64 GCAGACCGAAGAGGCAGAATG-GACAAGTCAG-GGATCGACCCAGTCCCCTC-CTACGTGCTGCC
* * *
27622287 GGT-CTCGCTGCCACAACCCTCGATCTG-GCTGGG
126 GATCCT-GCTACCACAACCCTCGATCTGAGCT-GA
* * * * *
27622320 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCTACAAAATGGACGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-GGACGTGCAGGCGCTCAG
* * * * * * * * * **
27622385 TCGGA-TGGAGAGGTAGAATGCG-CAAGCCGGGGATCG-GCCTGATCCCC-CCTACATGCTGTTG
65 -CAGACCGAAGAGGCAGAATG-GACAAGTCAGGGATCGACCCAG-TCCCCTCCTACGTGCTGCCG
* * * * * *
27622446 ATCCTACTACCGCAACCCTTGGTCCGATCTGA
127 ATCCTGCTACCACAACCCTCGATCTGAGCTGA
* * * * * ** * *
27622478 TCTTAGA-TTGGGAATTAACTCTGTATGCCTAAGCCAACATACGAAACGAGCGTGCAGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGA-CGTGCAGGCGCTCA
* *
27622542 GTC-GACCGGAGAGGTAGAATG
64 G-CAGACCGAAGAGGCAGAATG
27622563 CGCAAGCCGG
Statistics
Matches: 319, Mismatches: 64, Indels: 39
0.76 0.15 0.09
Matches are distributed among these distances:
157 7 0.02
158 103 0.32
159 201 0.63
160 8 0.03
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGACGTGCAGGCGCTCAGC
AGACCGAAGAGGCAGAATGGACAAGTCAGGGATCGACCCAGTCCCCTCCTACGTGCTGCCGATCC
TGCTACCACAACCCTCGATCTGAGCTGA
Found at i:27622937 original size:184 final size:184
Alignment explanation
Indices: 27622622--27622957 Score: 469
Period size: 184 Copynumber: 1.8 Consensus size: 184
27622612 TGTTGGTTCA
* *
27622622 GCTGCCGTAACCCTCAGACCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCTTAGACATCG
1 GCTGCCGCAACCCTCAGACCGGTCTGATCTTAGACTGGGAATGAACTCTATATACTTAGACATCG
* * * *
27622687 AATCAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAG
66 AATCAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAG
*
27622752 GCAGAATGCGCAAGTCGGGGATTGGCCCGATCCCCCCTGCGTGCTACCGATCCT
131 GCAGAATGCGCAAGCCGGGGATTGGCCCGATCCCCCCTGCGTGCTACCGATCCT
* ** *
27622806 GCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGCCTGGGAATGAACTCCT-TATACTTAGAC-TG
1 GCTGCCGCAACCCTCAGACCGGTCTGATCTTAGACTGGGAATGAACT-CTATATACTTAGACAT-
* * * * * * *
27622869 GGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAATCGACCAGAG
64 CGAATCAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAG
*
27622934 AGGCAGGATGCGCAAGCCGGGGAT
129 AGGCAGAATGCGCAAGCCGGGGAT
27622958 CGAACGGGTG
Statistics
Matches: 131, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
183 1 0.01
184 128 0.98
185 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (184 bp):
GCTGCCGCAACCCTCAGACCGGTCTGATCTTAGACTGGGAATGAACTCTATATACTTAGACATCG
AATCAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGAG
GCAGAATGCGCAAGCCGGGGATTGGCCCGATCCCCCCTGCGTGCTACCGATCCT
Found at i:27623617 original size:26 final size:26
Alignment explanation
Indices: 27623579--27623631 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27623569 GGTTCAAAAT
27623579 CTTAGACTGGGAACGAACTCCGCATG
1 CTTAGACTGGGAACGAACTCCGCATG
* *
27623605 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAACGAACTCCGCATG
27623631 C
1 C
27623632 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGCATG
Found at i:27623900 original size:159 final size:159
Alignment explanation
Indices: 27623605--27624036 Score: 374
Period size: 159 Copynumber: 2.7 Consensus size: 159
27623595 ACTCCGCATG
*** *
27623605 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATAAATAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGT
* * *
27623670 CGGCCGGAGAGGCAGAATGCACAAGCCGGGGGATCGACCCAATCCCCCCTACGTGCTATCGATCC
66 CGGCCGAAGAGGCAGAATGCACAAGCCGGAGGATCGACCCAATCCCCCCTACATGCTATCGATCC
**
27623735 TGCTGCCGCAACCCTTGGTCTGATCTAAT
131 CACTGCCGCAACCCTTGGTCTGATCTAAT
* * *
27623764 CTTAGAC-TGGGAATGAACTCCGTATAAATAAGTCAACCCACGAAATGAGCATGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATAAATAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * ** * * * *
27623828 TCGGCCGAAGAGGCATAATGCGCAAGCC-GAGGATC-AGCTCGGTCCACCTCTGCATGTTATATG
65 TCGGCCGAAGAGGCAGAATGCACAAGCCGGAGGATCGA-CCCAATCC-CCCCTACATGCTAT-CG
** ** * ***
27623891 -TCCCACTGCCATAACCCTCAGTCTG-GCTGGGG
127 ATCCCACTGCCGCAACCCTTGGTCTGATCT-AAT
* *** * ** **
27623923 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATAAATAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGT
** * * *
27623988 CGATC-AGAGAGGCAGAATGCGCAAGCCGG-GGATCGACCTAGTCCCCCCT
66 CGGCCGA-AGAGGCAGAATGCACAAGCCGGAGGATCGACCCAATCCCCCCT
27624037 GTGTGCTGTC
Statistics
Matches: 216, Mismatches: 48, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 19 0.09
159 192 0.89
160 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATAAATAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAGT
CGGCCGAAGAGGCAGAATGCACAAGCCGGAGGATCGACCCAATCCCCCCTACATGCTATCGATCC
CACTGCCGCAACCCTTGGTCTGATCTAAT
Found at i:27624111 original size:26 final size:26
Alignment explanation
Indices: 27624081--27624136 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
27624071 CTGGTCCGAT
*
27624081 CTTAGACTAGGAAAGATCTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
* *
27624107 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
27624133 CTTA
1 CTTA
27624137 AATCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:27626894 original size:158 final size:158
Alignment explanation
Indices: 27626568--27627000 Score: 390
Period size: 158 Copynumber: 2.7 Consensus size: 158
27626558 TCGTATGCCT
* * * *
27626568 AGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGG
1 AGACATGGAATAAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCACTCAGCCAG
* ** ** * *
27626633 TCGGAGAGGTAGAATGTGCAAGTTGGGGATCGACCCGATCCCCTCTTTGTGCTGTCGATCCTGCT
66 TCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCTCTACGTGCTGTCGACCCCGCT
** * * * * *
27626698 GCTGCAACCCTCAGTTCGGTCCGATCTT
131 GCCACAACCCTCAGGTCCGACCGAGCTC
* * * * *
27626726 AGAC-TGGGAATAAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCTGAGCCA
1 AGACAT-GGAATAAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCACTCAGCCA
* * * * * *
27626790 GTTGGAGAGGCATAATGTGTATGCCGGGGATC-AGCCCGGTCCCCCTCTACGTGCTGTCGGCCCC
65 GTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGA-CCCGAT-CCCCTCTACGTGCTGTCGACCCC
* *
27626854 GCTGCCACAACCCTC-GGTCCGACTGGGCTC
128 GCTGCCACAACCCTCAGGTCCGACCGAGCTC
** * * * * *
27626884 AGACATGGAATTTACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCACTCAGCCG
1 AGACATGGAATAAACTTCGTATGCCTAAGCCAACCCATGAAACGA-GCGTACAGGCACTCAGCCA
* * ** * **
27626948 GCCAGAGAGGCAGAATGCACAAGCCAGGGATCGGTCCGATCCCC-CTACGTGCT
65 GTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCTCTACGTGCT
27627001 ACCGATCCTA
Statistics
Matches: 216, Mismatches: 53, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
156 9 0.04
157 7 0.03
158 168 0.78
159 32 0.15
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
AGACATGGAATAAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGCACTCAGCCAG
TCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCTCTACGTGCTGTCGACCCCGCT
GCCACAACCCTCAGGTCCGACCGAGCTC
Found at i:27628604 original size:26 final size:26
Alignment explanation
Indices: 27628568--27628620 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27628558 CCGGTTTGAT
27628568 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
27628594 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
27628620 C
1 C
27628621 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:27629268 original size:26 final size:26
Alignment explanation
Indices: 27629239--27629288 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
27629229 CTGGTCCGAT
27629239 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
27629265 CTTATACTAGGGATGAACTCCGTA
1 CTTAGACTAGGGATGAACTCCGTA
27629289 CGCATAAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:27629631 original size:26 final size:26
Alignment explanation
Indices: 27629581--27629633 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27629571 CTGATCCGAT
**
27629581 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27629607 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27629633 C
1 C
27629634 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27629685 original size:342 final size:341
Alignment explanation
Indices: 27628922--27629999 Score: 1058
Period size: 343 Copynumber: 3.1 Consensus size: 341
27628912 CCAATCTGAT
* * * * * * *
27628922 CTTAGACTGGCAATGAACTTCGTATGCATAAGTTAACCCATGAAACGAGCGTT-CGGGCGTTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCAAGAAACGAGC-TTGCGGGTGCTAAG
* * * ** * *
27628986 CTGGCCGAAGAGGTATAATGCACAAGCCGGGGATTGGCCCGGTCCCCCTTTACGTACTATCGATC
65 CCGACCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCCGGTCCCCCTTTGCGTGCTATCGATC
* *
27629051 CCACTGCCATAACCCTCGGTCTGGCTGGGACTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
130 CCACTGCCATAA-CCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
** * * * * * * ** * *
27629116 ATGCACGAAACAGGTGTACAGGCGCTCAG-CCAGTTGGAGGGGCAGAATGCACAAGCCGGGGATT
194 ACCCACGAAACAGGCGTGCAGGTGCTCAGTCGA-TCGGAGAGGCAGAATGTGCAAGCTGGGGACT
* *
27629180 GGCCCTATCCCCCCTGCGTGCTGCCGATCCTACTGACGCAACCCTCAGTCTGGTCCGATCTTAGA
258 -GCCCGATCCCCCCTGCGTGCTGCCGATCCTACTGACGCAACCCTCAGTCTGATCCGATCTTAGA
*
27629245 CTGGGAATGAACTCCGTATG
322 CTGGGAATGAACTTCGTATG
* * * * * * *
27629265 CTTATACTAGGG-ATGAACTCCGTACGCATAAGTTAACCCACGAAACGAGCGTGC-GATCACTAA
1 CTTAGACT-GGGAATGAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCTTGCGGGT-GCTAA
* ** *
27629328 GCCGACCGAAGAGGCATAATGCACAAGTCGAAGATCAGCCCGGTCCCCCTCTGCGTGCTATC-AG
64 GCCGACCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCCGGTCCCCCTTTGCGTGCTATCGA-
* *
27629392 TCCCGCTGCCACAACCTTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
128 TCCCACTGCCATAACC-TCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * *
27629457 CAACCCACAAAACAGGCGTGGAGATGCTCAGTCGACCGGAGAGGTAGAATGTGTAAGCTGGGGAC
192 CAACCCACGAAACAGGCGTGCAGGTGCTCAGTCGATCGGAGAGGCAGAATGTGCAAGCTGGGGA-
* * ** *
27629522 CTGCCCGAT-CCCCCTGCGTGCTGCCGATCCTGCTGTCATAACCCTCGGTCTGATCCGATCTTAG
256 CTGCCCGATCCCCCCTGCGTGCTGCCGATCCTACTGACGCAACCCTCAGTCTGATCCGATCTTAG
*
27629586 ACTGGGAATGAACTTTGTATG
321 ACTGGGAATGAACTTCGTATG
* * * * *
27629607 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAAAAAATGAGCTTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCTTGCGGGTGCTAAGC
* *
27629672 CGACCGGAGAGGCATAA-G-ACGTAAGCCGGGGATCAGCACGGTCCCCCTTTGCGTGCTGCCGAT
66 CGACCGAAGAGGCATAATGCAC--AAGCCGGGGATCAGCCCGGTCCCCCTTTGCGTGCT----AT
* * **
27629735 CCCGCTGCCGGTCCTACTGCCATAATCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTG
125 --CGAT--C---CC-ACTGCCATAA-CCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCC
* ** * * *
27629800 TATGCCTAAACCAACCCACGAAACAAACGTGCCGGTGCTCAGTCGATCAGAGAGGCAGAATCTGC
181 TATGCCTAAGCCAACCCACGAAACAGGCGTGCAGGTGCTCAGTCGATCGGAGAGGCAGAATGTGC
* * * * ** * * **
27629865 AAGTTGGGGATCGGCCCGATCCCCCCTACATATTGCCGATCTTACTGCCGCAACCCTCAGTCCAA
246 AAGCTGGGGA-CTGCCCGATCCCCCCTGCGTGCTGCCGATCCTACTGACGCAACCCTCAGTCTGA
* *
27629930 TCTGATCTTAGACTGAGAATGAACTTCGTATG
310 TCCGATCTTAGACTGGGAATGAACTTCGTATG
* * * *
27629962 CCTAGA-TGTGGAATGAACACCGTATGCCTAAGCCAACC
1 CTTAGACTG-GGAATGAACTCCGTATGCATAAGTCAACC
27630000 TACAAAACGA
Statistics
Matches: 598, Mismatches: 110, Indels: 42
0.80 0.15 0.06
Matches are distributed among these distances:
340 2 0.00
341 4 0.01
342 166 0.28
343 206 0.34
344 5 0.01
346 2 0.00
348 2 0.00
350 1 0.00
353 2 0.00
354 114 0.19
355 94 0.16
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (341 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCAAGAAACGAGCTTGCGGGTGCTAAGC
CGACCGAAGAGGCATAATGCACAAGCCGGGGATCAGCCCGGTCCCCCTTTGCGTGCTATCGATCC
CACTGCCATAACCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACAGGCGTGCAGGTGCTCAGTCGATCGGAGAGGCAGAATGTGCAAGCTGGGGACTGCC
CGATCCCCCCTGCGTGCTGCCGATCCTACTGACGCAACCCTCAGTCTGATCCGATCTTAGACTGG
GAATGAACTTCGTATG
Found at i:27630105 original size:184 final size:184
Alignment explanation
Indices: 27629786--27630145 Score: 409
Period size: 184 Copynumber: 2.0 Consensus size: 184
27629776 GGCTTAGACA
* * * * **
27629786 TGGAATGAACTCTGTATGCCTAAACCAACCCACGAAACAAACGTGCCGGTGCTCAGTCGATCAGA
1 TGGAATGAACACCGTATGCCTAAACCAACCCACAAAACAAACGTGACGGCACTCAGTCGATCAGA
*** * * * *
27629851 GAGGCAGAATCTGCAAGTTGGGGATCGGCCCGATCCCCCCTACATATTGCCGATCTTACTGCCGC
66 GAGGCAGAATCTGCAAGCCAGGGATCGGCCCGATCCCCCCTACATACTGCCGATCCTACTACCAC
*
27629916 AACCCTCA-GTCCAATCTGATCTTAGACTGAGAATGAACTTCGTATGCCTAGATG
131 AACCCT-AGGTCCAATCCGATCTTAGACTGAGAATGAACTTCGTATGCCTAGATG
* * * * * * *
27629970 TGGAATGAACACCGTATGCCTAAGCCAACCTACAAAACGAGCGTGAGGGCACTCAGTCGGTCGGA
1 TGGAATGAACACCGTATGCCTAAACCAACCCACAAAACAAACGTGACGGCACTCAGTCGATCAGA
* * * * *
27630035 GAGGCAGAATGC-GCAAGCCAGGGATTGGCCCGATCCCCCCTGCATGCTGTCGATCCTACTATCA
66 GAGGCAGAAT-CTGCAAGCCAGGGATCGGCCCGATCCCCCCTACATACTGCCGATCCTACTACCA
** * * *
27630099 CAACCCTAGGTCCGGTCCGATCTTAGGCTGGGAATGATCTTCGTATG
130 CAACCCTAGGTCCAATCCGATCTTAGACTGAGAATGAACTTCGTATG
27630146 TCTAAGTTAA
Statistics
Matches: 143, Mismatches: 31, Indels: 4
0.80 0.17 0.02
Matches are distributed among these distances:
183 1 0.01
184 141 0.99
185 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (184 bp):
TGGAATGAACACCGTATGCCTAAACCAACCCACAAAACAAACGTGACGGCACTCAGTCGATCAGA
GAGGCAGAATCTGCAAGCCAGGGATCGGCCCGATCCCCCCTACATACTGCCGATCCTACTACCAC
AACCCTAGGTCCAATCCGATCTTAGACTGAGAATGAACTTCGTATGCCTAGATG
Found at i:27637606 original size:26 final size:26
Alignment explanation
Indices: 27637577--27637629 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27637567 CCGATCCAAT
27637577 CTTAGACCAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
* ** *
27637603 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
27637629 C
1 C
27637630 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCGTATG
Found at i:27637984 original size:26 final size:26
Alignment explanation
Indices: 27637955--27638007 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27637945 CCGGTCTGAT
*
27637955 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
27637981 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27638007 C
1 C
27638008 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27638485 original size:26 final size:26
Alignment explanation
Indices: 27638456--27638508 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27638446 CCGATCCGAT
27638456 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27638482 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27638508 C
1 C
27638509 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27639523 original size:158 final size:159
Alignment explanation
Indices: 27639202--27639604 Score: 401
Period size: 158 Copynumber: 2.6 Consensus size: 159
27639192 AACTCTGTAT
*
27639202 GCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAAC-AAGCGTGCGGGTGCTC
1 GCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACGAAGCGTGCGGGCGCTC
* ** * * * *
27639265 AGCCGGTTGGAGAGGCAAAATGCGCAAGCCAGGGATCAGCCTGGTCCCCCCTGTGTGCTGTCGAT
65 AGCCAGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTACTGTCGAT
** * * *
27639330 CCTGCTATCGTAACCCTCGGTTCGGTCTGA
130 CCCACTACCATAACCCTCAGTTCGGTCTGA
* * * * *
27639360 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAA-CGTGCGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAAGCGTGCGGGCGCTC
*
27639423 AGCCAGCCGAAGAGGCATAATGCGCAAGCC-GGGATCAGCCCGGTCCCCCTCTGCGTACTG-CTG
65 AGCCAGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGGTCCCCC-CTGCGTACTGTC-G
* * * * *
27639486 GTCCCACTACCATAGCCCTTAGTTTGG-CTGGG
128 ATCCCACTACCATAACCCTCAGTTCGGTCT-GA
** * * *
27639518 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GGCGTACGGGCACTCA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAAGCGTGCGGGCGCTCA
* * *
27639582 ACC-GACCGGAGAGGCAGAATGCG
66 GCCAG-CCGAAGAGGCAAAATGCG
27639605 TAAGTCGAGG
Statistics
Matches: 199, Mismatches: 37, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
157 23 0.12
158 172 0.86
159 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAAGCGTGCGGGCGCTCA
GCCAGCCGAAGAGGCAAAATGCGCAAGCCAGGGATCAGCCCGGTCCCCCCTGCGTACTGTCGATC
CCACTACCATAACCCTCAGTTCGGTCTGA
Found at i:27639713 original size:26 final size:26
Alignment explanation
Indices: 27639677--27639729 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27639667 CCAGTCTGAT
27639677 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27639703 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27639729 C
1 C
27639730 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27640975 original size:26 final size:26
Alignment explanation
Indices: 27640939--27640991 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27640929 CCAGTCCAAT
* *
27640939 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
27640965 CTTAAACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
27640991 C
1 C
27640992 CTAAGACAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:27641270 original size:197 final size:197
Alignment explanation
Indices: 27640905--27641273 Score: 427
Period size: 197 Copynumber: 1.9 Consensus size: 197
27640895 GCGTGCTGTC
* * *
27640905 GATCCTGCTGCCATAACCTTTGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAA
1 GATCCTGCTGCCACAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAA
* * ** *
27640970 ACTGGGGATGAACTCCATATGCCTAAGACAACCCAAGAAACAAGCGTACGGATGCTCAGTCGACC
66 ACTGGGAATAAACTCCATATGCCTAAGACAACCCAAGAAACAAGCGTACGGACACTCAGCCGACC
* * *
27641035 AGAGAGGCAGCATCTGCAAGCCGAGGATCCCCCCGATCCCCCTTTATGTGCTACCGATCTTACTA
131 AAAGAGGCAGAATCTGCAAGCCGAGGATCCACCCGATCCCCCTTTATGTGCTACCGATCTTACTA
27641100 CT
196 CT
** ** * *
27641102 GATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAC
1 GATCCTGCTGCCACAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAA
* * * ** ** * **
27641167 ACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCACTCAGCCGGT
66 AC-TGGGAATAAACTCCATATGCCTAAGACAACCCAAGAAACAAGCGTACGGACACTCAGCCGAC
* * * *
27641231 CAAAGAGGCAGAATGTGCAAGTCGGGGA-CCGATCCGATCCCCC
130 CAAAGAGGCAGAATCTGCAAGCCGAGGATCC-ACCCGATCCCCC
27641274 CTGCATGCTG
Statistics
Matches: 139, Mismatches: 31, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
196 2 0.01
197 136 0.98
198 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (197 bp):
GATCCTGCTGCCACAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAA
ACTGGGAATAAACTCCATATGCCTAAGACAACCCAAGAAACAAGCGTACGGACACTCAGCCGACC
AAAGAGGCAGAATCTGCAAGCCGAGGATCCACCCGATCCCCCTTTATGTGCTACCGATCTTACTA
CT
Found at i:27641673 original size:26 final size:26
Alignment explanation
Indices: 27641637--27641689 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27641627 ACGGTGTGAT
*
27641637 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27641663 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27641689 C
1 C
27641690 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27642056 original size:26 final size:26
Alignment explanation
Indices: 27642018--27642070 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27642008 CTGGTTTGAT
27642018 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27642044 CTTAGAC-ACGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
27642070 C
1 C
27642071 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27642398 original size:159 final size:157
Alignment explanation
Indices: 27642043--27642405 Score: 388
Period size: 158 Copynumber: 2.3 Consensus size: 157
27642033 AACTCCGTAT
* * *
27642043 GCTTAGACACGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * ** * * * * ** *
27642108 TCGGTCGGAGAGATAAAATGCGTAAGCCGGGGACCTTTTCGATCCCCCCTACGTGCTGTCGATCC
66 CCGGCCAAAAAGACAAAATGCGCAAGCCAGGGA-CTTGCCCATCCCCCCTACGTGCTGTCGATCC
* * * * * *
27642173 TACTGTTGCGACCCTCGGTCTGGTCTGA
130 CACTGCTACAACCCTCGGTCTCGACTGA
* ** *
27642201 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
27642266 CCGGCCAAAAAGGCATAATGCGCAAGCCAGGGA-TTGGCCCAGTCCCCCTCTGCGTGCTGTCGGT
66 CCGGCCAAAAAGACAAAATGCGCAAGCCAGGGACTT-GCCCA-TCCCCC-CTACGTGCTGTCGAT
*
27642330 CCCACTGCTACAACCCTCGGT-TCGACTGGG
128 CCCACTGCTACAACCCTCGGTCTCGACT-GA
* *
27642360 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
27642406 TGGGCGTGCG
Statistics
Matches: 168, Mismatches: 33, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
156 2 0.01
157 2 0.01
158 92 0.55
159 72 0.43
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGGCCAAAAAGACAAAATGCGCAAGCCAGGGACTTGCCCATCCCCCCTACGTGCTGTCGATCCC
ACTGCTACAACCCTCGGTCTCGACTGA
Found at i:27642464 original size:159 final size:157
Alignment explanation
Indices: 27642043--27642488 Score: 410
Period size: 159 Copynumber: 2.8 Consensus size: 157
27642033 AACTCCGTAT
* *
27642043 GCTTAGACACGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ****
27642108 TCGGTCGGAGAGATAAAATGCGTAAGCCGGGGACCTTTTCGATCCCCCCTACGTGCTGTCGATCC
66 TCGGTCGGAGAGGTAAAATGCGTAAG-CGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCC
* * * * * *
27642173 TACTGTTGCGACCCTCGGTCTGGTCTGA
130 CACTGCTACAACCCTCGGTCTCGACTGA
* ** * *
27642201 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTGAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * * * * * *
27642266 CCGGCCAAAAAGGCATAATGCGCAAGCCAGGGATTGGCCC-AGTCCCCCTCTGCGTGCTGTCGGT
66 TCGGTCGGAGAGGTAAAATGCGTAAGCGA-GGATCGGCCCGA-TCCCCC-CTACGTGCTGTCGAT
*
27642330 CCCACTGCTACAACCCTCGGT-TCGACTGGG
128 CCCACTGCTACAACCCTCGGTCTCGACT-GA
* * * * * *
27642360 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGAGCACTCAG
1 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * ** *
27642425 TCAATCGGAGAGGTAGAATGCGTAAGTCGAGGATCGGCCCGATCTCCATTACATGCTGTCGATC
66 TCGGTCGGAGAGGTAAAATGCGTAAG-CGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATC
27642489 TTGCTGCCGC
Statistics
Matches: 221, Mismatches: 61, Indels: 12
0.75 0.21 0.04
Matches are distributed among these distances:
157 2 0.01
158 102 0.46
159 114 0.52
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACAAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGGTCGGAGAGGTAAAATGCGTAAGCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGATCCC
ACTGCTACAACCCTCGGTCTCGACTGA
Found at i:27642502 original size:882 final size:882
Alignment explanation
Indices: 27640977--27642615 Score: 2043
Period size: 882 Copynumber: 1.9 Consensus size: 882
27640967 TAAACTGGGG
* **
27640977 ATGAACTCCATATGCCTAAGACAACCCAAGAAACAAGCGTACGGATGCTCAGTCGACCAGAGAGG
1 ATGAACTCCATATGCCTAAGACAACCCAAGAAACAAGCATACGGATGCTCAACCGACCAGAGAGG
* * * *
27641042 CAGCATCTGCAAGCCGAGGATCCCCCCGATCCCCCTTTATGTGCTACCGATCTTACTACTGATCC
66 CAGAATCTGCAAGCCGAGGATCCCCCCGATCCCCCTCTACGTGCTACCGATCCTACTACTGATCC
* * * * * *
27641107 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTACACATG
131 TACTACCACAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTACACACG
* * * *
27641172 GAATAAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCACTCAGCCGGTCAAAGA
196 GAATAAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGCCGGTCAAAGA
* * * * * * *
27641237 GGCAGAATGTGCAAGTCGGGGACCGATCCGATCCCCCCTGCATGCTGTCGATCCTGCTACCGTAA
261 GACAAAATGCGCAAGCCGGGGACCGATCCGATCCCCCCTACATGCTGTCGATCCTACTACCGCAA
* *
27641302 CCCTCGGTCTGATTCAATCTGAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAATG
326 CCCTCGGTCTGATTCAATCTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACG
* * * * *
27641367 AGTGTTCGGGCGCTGAGCCAACCGAAGAGGCATAATGCGCAAGCCGACGATCGGCCTGATCCCAC
391 AGCGTACGGGCGCTGAGCCAACCAAAAAGGCATAATGCGCAAGCCGACGATCGGCCAGATCCCAC
* * * *
27641432 TCTGCGTGCTACCCGTCCCACTACCACAACCATTGGTCCGGCTTGGGCTTAGACATGGAATGAAC
456 TCTGCGTGCTACCCGTCCCACTACCACAACCATCGGTCCGACTGGGGCTTAGACAAGGAATGAAC
* * ** **
27641497 TCCCTATGCCTAAGTCAACCCATGAAACGGGAATGCAGGCGTTCAACCGGTCGAAGAGGTAGAAT
521 TCCCTATGCCTAAGCCAACCCACGAAACGGGAATGCAGGCACTCAACCAATCGAAGAGGTAGAAT
* * * * * * *
27641562 GCGCAAGTTGAGGATCGGTCGGGTCTCACTTACGTGCTATCGATCCTGCTGTCGCAACCTTCGGT
586 GCGCAAGTCGAGGATCGGCCCGATCTCACTTACATGCTATCGATCCTGCTGCCGCAACCCTCGGT
* ***
27641627 ACGGTGTGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGACTGGGGATGAACTCCGTATGCC
651 ACGATCCAATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGGATGAACTCCGTATGCC
* * * *
27641691 TAAGTCAATCCACGAAACGAGCGTGCGAGG-GCTCCAGCCAGCCGAAGAGGCCGACCGGAGAGGC
715 TAAATCAACCCACAAAACGAGCGTGCG-GGTGCT-CAACCAGCCGAAGAGGCCGACCGGAGAGGC
27641755 ATAATGCGCAAGTCAGGGATCAGCTCGATCCCCTTATATGTGCTGCCGATCCCGCTGTCGGTCCT
778 ATAATGCGCAAGTCAGGGATCAGCTCGATCCCCTTATATGTGCTGCCGATCCCGCTGTCGGTCCT
27641820 ATTGCAACAACCCTCGGTTCAGCTAGGGCTTAGACTTGGA
843 ATTGCAACAACCCTCGGTTCAGCTAGGGCTTAGACTTGGA
* * * ** * * ***
27641860 ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGTGCTCAACCGATTGGAGAGG
1 ATGAACTCCATATGCCTAAGACAACCCAAGAAACAAGCATACGGATGCTCAACCGACCAGAGAGG
* * * ** * ** *
27641925 CAGAATGTGGAAGCCGGGGATCGGCCCGATCCCCC-CTACGTGCTATCGATCCTACTGTTGGTCC
66 CAGAATCTGCAAGCCGAGGATCCCCCCGATCCCCCTCTACGTGCTACCGATCCTACTACTGATCC
* * *
27641989 TACTACCATAACCCTCAGTCTGGTTTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACACG
131 TACTACCACAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTACACACG
* * * * **
27642054 GAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAGA
196 GAATAAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGCCGGTCAAAGA
* * ** * * *** *
27642119 GATAAAATGCGTAAGCCGGGGACCTTTTCGATCCCCCCTACGTGCTGTCGATCCTACTGTTGCGA
261 GACAAAATGCGCAAGCCGGGGACCGATCCGATCCCCCCTACATGCTGTCGATCCTACTACCGCAA
* * * *
27642184 CCCTCGGTCTG-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
326 CCCTCGGTCTGATTC-AATCTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAAC
** * *
27642248 GAGCGTACGGGCGCTGAGCCGGCCAAAAAGGCATAATGCGCAAGCC-AGGGATTGGCCCAG-TCC
390 GAGCGTACGGGCGCTGAGCCAACCAAAAAGGCATAATGCGCAAGCCGA-CGATCGG-CCAGATCC
* ** * * * * *
27642311 CCCTCTGCGTGCTGTCGGTCCCACTGCTACAACCCTCGGTTCGACTGGGGCTTAGACAAGGAATG
453 CACTCTGCGTGCTACCCGTCCCACTACCACAACCATCGGTCCGACTGGGGCTTAGACAAGGAATG
* ** ** *
27642376 AACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGC-GAGCACTCAGTCAATCGGAGAGGTA
518 AACTCCCTATGCCTAAGCCAACCCACGAAACGGGAATGCAG-GCACTCAACCAATCGAAGAGGTA
* * *
27642440 GAATGCGTAAGTCGAGGATCGGCCCGATCTC-CATTACATGCTGTCGATCTTGCTGCCGCAACCC
582 GAATGCGCAAGTCGAGGATCGGCCCGATCTCAC-TTACATGCTATCGATCCTGCTGCCGCAACCC
* * *
27642504 TCGGTCCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAATTTCGTA
646 TCGGTACGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTA
*
27642569 TGCCTAAATCAACCCACAAAATGAGCGTGCGGGTGCTCAACCAGCCG
711 TGCCTAAATCAACCCACAAAACGAGCGTGCGGGTGCTCAACCAGCCG
27642616 GCCTCTCCTT
Statistics
Matches: 626, Mismatches: 123, Indels: 16
0.82 0.16 0.02
Matches are distributed among these distances:
881 16 0.03
882 524 0.84
883 86 0.14
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (882 bp):
ATGAACTCCATATGCCTAAGACAACCCAAGAAACAAGCATACGGATGCTCAACCGACCAGAGAGG
CAGAATCTGCAAGCCGAGGATCCCCCCGATCCCCCTCTACGTGCTACCGATCCTACTACTGATCC
TACTACCACAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTACACACG
GAATAAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCAGCCGGTCAAAGA
GACAAAATGCGCAAGCCGGGGACCGATCCGATCCCCCCTACATGCTGTCGATCCTACTACCGCAA
CCCTCGGTCTGATTCAATCTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACG
AGCGTACGGGCGCTGAGCCAACCAAAAAGGCATAATGCGCAAGCCGACGATCGGCCAGATCCCAC
TCTGCGTGCTACCCGTCCCACTACCACAACCATCGGTCCGACTGGGGCTTAGACAAGGAATGAAC
TCCCTATGCCTAAGCCAACCCACGAAACGGGAATGCAGGCACTCAACCAATCGAAGAGGTAGAAT
GCGCAAGTCGAGGATCGGCCCGATCTCACTTACATGCTATCGATCCTGCTGCCGCAACCCTCGGT
ACGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCT
AAATCAACCCACAAAACGAGCGTGCGGGTGCTCAACCAGCCGAAGAGGCCGACCGGAGAGGCATA
ATGCGCAAGTCAGGGATCAGCTCGATCCCCTTATATGTGCTGCCGATCCCGCTGTCGGTCCTATT
GCAACAACCCTCGGTTCAGCTAGGGCTTAGACTTGGA
Found at i:27642555 original size:26 final size:26
Alignment explanation
Indices: 27642519--27642571 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27642509 CCGATCCAAT
27642519 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
27642545 CTTAGACTGGGGATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
27642571 C
1 C
27642572 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:27643410 original size:26 final size:26
Alignment explanation
Indices: 27643359--27643411 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27643349 CCGGTCTGAT
* *
27643359 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
27643385 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
27643411 C
1 C
27643412 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27645795 original size:26 final size:26
Alignment explanation
Indices: 27645766--27645816 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
27645756 TGGTCCGATC
27645766 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
27645792 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
27645817 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:27646819 original size:26 final size:26
Alignment explanation
Indices: 27646790--27646842 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27646780 CCGGTTCGAC
*
27646790 CTTAGACTG-GGAATGAACTTCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
27646816 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
27646842 C
1 C
27646843 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:27647533 original size:26 final size:26
Alignment explanation
Indices: 27647494--27647544 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
27647484 GATTCGATCA
*
27647494 TAGACTGGGAATAAACTTTGTATGCT
1 TAGACTGGGAATAAACTCTGTATGCT
*
27647520 TAGACTGGGGATAAACTCTGTATGC
1 TAGACTGGGAATAAACTCTGTATGC
27647545 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCTGTATGCT
Found at i:27648171 original size:26 final size:26
Alignment explanation
Indices: 27648133--27648185 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27648123 GGCTCAAACT
27648133 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27648159 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27648185 C
1 C
27648186 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27648505 original size:26 final size:26
Alignment explanation
Indices: 27648476--27648528 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27648466 CCGGTTCGAT
*
27648476 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
* * *
27648502 CTTAGATTGGGGATGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
27648528 C
1 C
27648529 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:27648713 original size:26 final size:26
Alignment explanation
Indices: 27648684--27648733 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
27648674 TCGGTCCGAT
27648684 CTTAGAC-TGGGAATGAACTCCGTAGG
1 CTTAGACAT-GGAATGAACTCCGTAGG
27648710 CTTAGACATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
27648734 TGCCAAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTAGG
Found at i:27648905 original size:26 final size:26
Alignment explanation
Indices: 27648864--27648916 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27648854 CCGATCCGAT
*
27648864 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27648890 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACT-AGGAATGAACTCCGTATG
27648916 C
1 C
27648917 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27648965 original size:180 final size:178
Alignment explanation
Indices: 27648663--27649298 Score: 571
Period size: 198 Copynumber: 3.4 Consensus size: 178
27648653 CCTACTACCA
* * *
27648663 CAACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTAGGCTTAGACATGGAATGAAC
1 CAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
* * * **
27648728 TCCGTATGCCAAAGCCAACCCATGAAATGAGCGTGCGAAAGC-TT-AGTTGGTCGGAGAGGCAGA
66 TCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCG--GGCGTTCAGCCGGTCGGAGAGGCAGA
* *
27648791 ATGCACAAGTCGGGGACCGACCCGATCCCTCCTGCGTGCTGTTGATCCTGCG
128 ATGCACAAGCCGGGGATCGACCCGATCCC-CCTGCGTGCTGTTGATCCTGCG
* * * *
27648843 CAACCCTCTGTCCGATCCGATCTTAGACTAGGAATGAACTTCGTATGCTTAGAC-TGAGGATGAA
1 CAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATG-GAATGAA
*
27648907 CTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGTTCAGCCGGTCGGAGAGGCCGAT
65 CTCCGTATGCCTAAG-CAACCCATGAAACGAGCGTGCGGGCGTTCAGCCGGTCGGAGAGG-C-A-
* * ** ** *
27648972 CGGAGAGGCAGAATATGCAAGCCAGGGATC-AGCCCGATCCCCCCTTATGTGCTACTGGTACAAC
126 --GA-ATGC-----A--CAAGCCGGGGATCGA-CCCGAT-CCCCC-TGCGTGCTGTTGAT-C--C
*
27649036 TACCG
175 T-GCG
* * *
27649041 CAACCTTCGGTTCGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
1 CAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
* * * * * *
27649106 TCTGTGTGCCTAAGCAAACCCATGAAACTAGCGTGCGGGCGCTCAGCCGGTCGAAAAGGCAGAAT
66 TCCGTATGCCTAAGC-AACCCATGAAACGAGCGTGCGGGCGTTCAGCCGGTCGGAGAGGCAGAAT
* * * * *
27649171 GC-CTAAGCCGAGGATCGGCCCGGTCCACCCTGCGTGCTGTCGATCCTGTTACCA
130 GCAC-AAGCCGGGGATCGACCCGATCC-CCCTGCGTGCTGTTGATCCTG----CG
* * *
27649225 CAACCCTCGGTCCGGTCCGGTCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAGTGAAC
1 CAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
*
27649290 TCCATATGC
66 TCCGTATGC
27649299 TTAGACATGG
Statistics
Matches: 364, Mismatches: 60, Indels: 60
0.75 0.12 0.12
Matches are distributed among these distances:
178 2 0.01
179 4 0.01
180 101 0.28
181 3 0.01
182 1 0.00
183 1 0.00
184 77 0.21
185 20 0.05
186 3 0.01
191 1 0.00
192 4 0.01
193 20 0.05
194 12 0.03
195 1 0.00
196 1 0.00
197 4 0.01
198 107 0.29
199 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (178 bp):
CAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAAC
TCCGTATGCCTAAGCAACCCATGAAACGAGCGTGCGGGCGTTCAGCCGGTCGGAGAGGCAGAATG
CACAAGCCGGGGATCGACCCGATCCCCCTGCGTGCTGTTGATCCTGCG
Found at i:27649275 original size:26 final size:26
Alignment explanation
Indices: 27649246--27649323 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
27649236 CCGGTCCGGT
*
27649246 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
27649272 CTTAGACATGGAGTGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
*
27649298 CTTAGACATGGAATGAACTCCCTATG
1 CTTAGACATGGAATGAACTCCATATG
27649324 GCTAAGCCAA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
26 46 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:27649424 original size:210 final size:210
Alignment explanation
Indices: 27649062--27649500 Score: 566
Period size: 210 Copynumber: 2.1 Consensus size: 210
27649052 TCGGTTCGAT
* ** *
27649062 CTTAGAC-TAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTGTGCCTAAGCAAACC
1 CTTAGACAT-GGAATGAACTCCATATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACC
* * * *
27649126 CATGAAACTAGCGTGCGGGCGCTCAGCCGGTCGAAAAGGCAGAATGCCTAAGCCGAGGATCGGCC
65 CATGAAACTAGAGTGCGGGCACTCAGCCAGTCGAAAAGGCAGAATGCCTAAGCCGAGGATCGACC
* ** *
27649191 CGGTCCACCCTGCGTGCTGTCGATCCTGTTACCACAACCCTCGGTCCGGTCCGGTCTTAGACTGG
130 CGGTCCACCCTGCATGCTGTCGATCCTACTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGG
* *
27649256 GAATGAACTCCGTATG
195 GAATGAACTCCATAGG
* * *
27649272 CTTAGACATGGAGTGAACTCCATATGCTTAGACATGGAATGAACTCCCTATGGCTAAGCCAACCC
1 CTTAGACATGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCCTATGCCTAAG-CAAACC
* * * *
27649337 CA-GAAA-TGAGAGTGCGGGCACTCAGCCAG-CGGGAAATGTAGAATGCGC-AAGCCTG-GGTTC
65 CATGAAACT-AGAGTGCGGGCACTCAGCCAGTC-GAAAAGGCAGAATGC-CTAAGCC-GAGGATC
** *
27649397 GACCCGGTCCACCCTGCATGCTGTCGATCCTACTACTGCAACCCTCGGTCTGGTCCGATCTTAGA
126 GACCCGGTCCACCCTGCATGCTGTCGATCCTACTACCACAACCCTCGGTCCGGTCCGATCTTAGA
27649462 CTGGGAATGAACTCCATAGG
191 CTGGGAATGAACTCCATAGG
27649482 CTTAGACATGGAATGAACT
1 CTTAGACATGGAATGAACT
27649501 TTGTATGCCT
Statistics
Matches: 198, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
209 2 0.01
210 186 0.94
211 10 0.05
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.21
Consensus pattern (210 bp):
CTTAGACATGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCC
ATGAAACTAGAGTGCGGGCACTCAGCCAGTCGAAAAGGCAGAATGCCTAAGCCGAGGATCGACCC
GGTCCACCCTGCATGCTGTCGATCCTACTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGG
AATGAACTCCATAGG
Found at i:27649624 original size:184 final size:184
Alignment explanation
Indices: 27649272--27650126 Score: 714
Period size: 184 Copynumber: 4.5 Consensus size: 184
27649262 ACTCCGTATG
* * * *
27649272 CTTAGACAT-GGAGTGAACTCCATATGCTTAGACATGGAATGAACTCCCTATGGCTAAGCCAACC
1 CTTAGAC-TGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * ** * * * * *
27649336 C-CAGAAATGAGAGTGCGGGCACTCAGCCAGCGGGAAATGTAGAATGCGCAAGCCTGGGTTCGAC
65 CAC-GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGTAGAATACGCAAGCCGGGGATCGAC
* * * * *
27649400 CCGGTCCACCCTGCATGCTGTCGATCCTACTACTGCAACCCTCGGTCTGGTCCGAT
129 CCGGTCCACCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * **
27649456 CTTAGACTGGGAATGAACTCCATAGGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * *
27649521 ATGAAACGAGCGTGCGGGCGTTCAGTCGGCCAGAGAGGTAGAATGCGCAAGTCGGGGACCAACCC
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGTAGAATACGCAAGCCGGGGATCGACCC
* * * * * *
27649586 GATTCC-CCCTACGTGTTGTTGATCCTGCTGTCGCAACCCTCGATCCGGTCCGAT
131 G-GTCCACCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
* * * * * *
27649640 CTTAGATTGGGAATGAACTCTGTATGCTTAGA-TTGGGTATGAACTCCGTATGCCTAAGTCAACT
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACC
* *
27649704 CACGAAACGAGCATGCAGGCGCTCAGTCGGCCGGAGAGGCCGATCGGAGAGGTAGAATACGCAAG
65 CACGAAACGAGCGTGCGGGCGCTCA----GCC-----GGCC-A---GAGAGGTAGAATACGCAAG
* * * *
27649769 CCAGGGATCGGCCCAGTCC-CCCTTGCGTGCTGTCGATCCTGCTACTGGTCCTGCTGCCGCAACC
117 CCGGGGATCGACCCGGTCCACCC-TACGTGC--T-G-T-C-G--A----TCCTGCTGCCGCAACC
*
27649833 CTCAGT-TCGGTCCGAT
169 CTCGGTCT-GGTCCGAT
* *
27649849 CTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* ** * * * * * **
27649914 ACGAAACGAGCGGGTTGGAGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCCGGGGATCGGCGT
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGTAGAATACGCAAGCCGGGGATCGACCC
* * * * *
27649979 GGTCCACCCTACGTGCTATCGATCCTGCTACCGTAACCTTCGGTCTGGTCTGAT
131 GGTCCACCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
** * *
27650033 CTTAGACTTTGAATTAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* * * *
27650098 CCGAAATGAGCGTACGGGCACTCAGCCGG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGG
27650127 GGATCGACCT
Statistics
Matches: 533, Mismatches: 104, Indels: 68
0.76 0.15 0.10
Matches are distributed among these distances:
183 2 0.00
184 322 0.60
185 4 0.01
188 3 0.01
190 1 0.00
191 1 0.00
192 1 0.00
193 4 0.01
194 2 0.00
196 45 0.08
197 35 0.07
199 1 0.00
200 4 0.01
201 1 0.00
203 1 0.00
205 4 0.01
209 101 0.19
210 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (184 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGTAGAATACGCAAGCCGGGGATCGACCC
GGTCCACCCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
Found at i:27649676 original size:26 final size:26
Alignment explanation
Indices: 27649640--27649692 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27649630 CCGGTCCGAT
*
27649640 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
27649666 CTTAGATTGGGTATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
27649692 C
1 C
27649693 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:27649878 original size:26 final size:26
Alignment explanation
Indices: 27649849--27649901 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27649839 TCGGTCCGAT
27649849 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
27649875 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27649901 C
1 C
27649902 CTAAGCAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27650072 original size:26 final size:26
Alignment explanation
Indices: 27650033--27650085 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27650023 CTGGTCTGAT
* * *
27650033 CTTAGACTTTGAATTAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
27650059 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27650085 C
1 C
27650086 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27650289 original size:158 final size:154
Alignment explanation
Indices: 27650121--27650850 Score: 421
Period size: 158 Copynumber: 4.6 Consensus size: 154
27650111 ACGGGCACTC
* * * *
27650121 AGCCGGGGATCGACCTGATCCACCTTGCGTGCTGTCGATCTTGCTACTGCAACCCTCATACCGGT
1 AGCCGAGGATCGACC-GATCCCCCTTGCGTGCTATCGATCTTGCTACCGCAACCCTCAT-CCGGT
*
27650186 CTGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCAT
64 CTGATCTTAGACTG-GAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCAC
*
27650251 TGAGCCGGTCGGAGAGGCATAATGTGCA
128 TGAGCCGG-CGGAGAGGCATAATGCGCA
* * * * * * * * * *
27650279 AGCTGAGGATCGACCCAGTCCCCCTCTACGTGCTACCGGTCCTGCTGCCACACCCCTCGGTCC-G
1 AGCCGAGGATCGACCGA-TCCCCCT-TGCGTGCTATCGATCTTGCTACCGCAACCCTC-ATCCGG
* ** * * * *
27650343 ACTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGT
63 TCT-GATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGC
* * * * * * *
27650408 GCTCAACTGGCGGGAGAGGCAAAATACACA
126 ACTGAGCCGGC-GGAGAGGCATAATGCGCA
* * * * *
27650438 AACCGGGGATCGACCCGATCCCCCCTGCGTGCTATCAATCCTAT-C-ACCGTAACCCTCAGTCCG
1 AGCCGAGGATCGA-CCGATCCCCCTTGCGTGCTATCGAT-CT-TGCTACCGCAACCCTCA-TCCG
* * * * * * *
27650501 GTCTGATCTTAGATTGGGAATGAGCCCCATATGTCTAAGTCAACCCACAAAATGAGCGTTCGGGC
62 GTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGC
* *
27650566 ACTGAGCCGACCAGAGAGGCATAATGCGCA
126 ACTGAGCCG-GCGGAGAGGCATAATGCGCA
* * * * * *** * ** *
27650596 AGCC-AGGGATCGGCCTGGTCCCCCTTTGCGTGTTGTTGATCCCACGT-TCAAAACCCTCGGTCC
1 AGCCGA-GGATCGACC-GATCCCCC-TTGCGTGCTATCGATCTTGC-TACCGCAACCCTC-ATCC
* *** * * * * * * *
27650659 AG-CTGGGGTTAGACATGTAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGTGGG
61 GGTCTGATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGG
** * * * *
27650723 CGTTCAGCAGGTCGGAGAGGCAGAATGCACA
125 CACTGAGCCGG-CGGAGAGGCATAATGCGCA
* * * * * * * * *
27650754 AGTCGAGGTTCGGTCCGGT-CCCCTCTGCGTGCTACCGATCCTGCTATCGCAACCCTCGGTCCAG
1 AGCCGAGGATC-GACCGATCCCCCT-TGCGTGCTATCGATCTTGCTACCGCAACCCTC-ATCCGG
*
27650818 TCCGATCTTAGACTGGGAATGAACTCCGTATGC
63 TCTGATCTTAGACT-GGAATGAACTCCGTATGC
27650851 TTAGACTGGG
Statistics
Matches: 421, Mismatches: 123, Indels: 56
0.70 0.20 0.09
Matches are distributed among these distances:
156 2 0.00
157 38 0.09
158 229 0.54
159 145 0.34
160 7 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (154 bp):
AGCCGAGGATCGACCGATCCCCCTTGCGTGCTATCGATCTTGCTACCGCAACCCTCATCCGGTCT
GATCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTGA
GCCGGCGGAGAGGCATAATGCGCA
Found at i:27650504 original size:317 final size:316
Alignment explanation
Indices: 27650123--27650850 Score: 777
Period size: 317 Copynumber: 2.3 Consensus size: 316
27650113 GGGCACTCAG
* * * * *
27650123 CCGGGGATCGACCTGATCCACCTTGCGTGCTGTCGAT-CTTGCTACTGCAACCCTCA-TACCGGT
1 CCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTT-CTACCGCAACCCTCAGT-CCGGT
* *
27650186 CTGATCTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCAT
64 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCAC
** * * *
27650251 TGAGCCGGTCGGAGAGGCATAATGTGCAAG-CTGAGGATCGACCCAGTCCCCCTCTACGTGCTAC
129 TGAGCCGACCAGAGAGGCATAATGCGCAAGCCAG-GGATCGACCCAGTCCCCCTCTACGTGCTAC
* ** * * **
27650315 CGGTCCTGC-TGCCACACCCCTCGGTCC-GACTGGGGCTTAGACATGGAATGAACTCTGTATGCC
193 CGATCCCACGT-CCAAAACCCTCGGTCCAG-CTGGGG-TTAGACATGGAATGAACTCCCTATGCC
* *
27650378 TAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACTGG-CGGGAGAGGCAAAATACACAAA
255 TAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACAGGTC-GGAGAGGCAAAATACACAAA
* *
27650440 CCGGGGATCGACCCGATCCCCCCTGCGTGCTATCAATCCTATC-ACCGTAACCCTCAGTCCGGTC
1 CCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCT-TCTACCGCAACCCTCAGTCCGGTC
* * * * * * *
27650504 TGATCTTAGATTGGGAATGAGCCCCATATGTCTAAGTCAACCCACAAAATGAGCGTTCGGGCACT
65 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACT
* ** * * * ***
27650569 GAGCCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCTTTGCGTGTTGTTG
130 GAGCCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTCTACGTGCTACCG
* *
27650634 ATCCCACGTTCAAAACCCTCGGTCCAGCTGGGGTTAGACATGTAATGAACTCCCTATGCCTAAGC
195 ATCCCACGTCCAAAACCCTCGGTCCAGCTGGGGTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * * * *
27650699 CAACCCACGAAATGGGCGTGTGGGCGTTCAGCAGGTCGGAGAGGCAGAATGCACAAG
260 CAACCCACGAAACGAGCGTGCGGGCGCTCAACAGGTCGGAGAGGCAAAATACACAAA
* * * ** * * * * * * * *
27650756 TCGAGGTTCGGTCCGGTCCCCTCTGCGTGCTACCGATCCTGCTATCGCAACCCTCGGTCCAGTCC
1 CCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTTCTACCGCAACCCTCAGTCCGGTCT
27650821 GATCTTAGACTGGGAATGAACTCCGTATGC
66 GATCTTAGACTGGGAATGAACTCCGTATGC
27650851 TTAGACTGGG
Statistics
Matches: 334, Mismatches: 69, Indels: 17
0.80 0.16 0.04
Matches are distributed among these distances:
315 1 0.00
316 147 0.44
317 177 0.53
318 8 0.02
319 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (316 bp):
CCGGGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTTCTACCGCAACCCTCAGTCCGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTG
AGCCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTCTACGTGCTACCGA
TCCCACGTCCAAAACCCTCGGTCCAGCTGGGGTTAGACATGGAATGAACTCCCTATGCCTAAGCC
AACCCACGAAACGAGCGTGCGGGCGCTCAACAGGTCGGAGAGGCAAAATACACAAA
Found at i:27650853 original size:26 final size:26
Alignment explanation
Indices: 27650824--27650876 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27650814 CCAGTCCGAT
27650824 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27650850 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27650876 C
1 C
27650877 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27651243 original size:26 final size:26
Alignment explanation
Indices: 27651205--27651257 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27651195 CTGATCTGAT
*
27651205 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27651231 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27651257 C
1 C
27651258 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27651575 original size:159 final size:158
Alignment explanation
Indices: 27651231--27651689 Score: 527
Period size: 159 Copynumber: 2.9 Consensus size: 158
27651221 ACTTCGTATG
* **
27651231 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * *
27651296 CAGCCAGATAGGTAGAATGCGTAAGCCAGGGATCGACCCGGT-CCCCCTACGTGCTT-T-GATCC
66 CAGCCAGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTG-TTGTCGATCC
*
27651358 TGCTGCCGCAACCCTCGGTCCGATCTAAT
130 TGCTGCCGCAACCCTCGATCCGATCTAAT
** * * * *
27651387 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAATCAACCCACAAAATGAGTGTGCGGGCACTAAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *
27651451 CCAACC-GAAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGTTGTCGGT
65 CCAGCCAG-AGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCC-CTGCGTGTTGTCGAT
* * *
27651515 CCTACTGCCACAACCCTCGATCCGA-CTGGCA-
128 CCTGCTGCCGCAACCCTCGATCCGATCT--AAT
* * * * *
27651546 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACGGGCGTGTGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * *
27651611 CAGCCAGAGAGGCAGAATGCATAAGCCAGGGATCGGCCCGATCCCCCCCGCGTGCTGTCGATCCT
66 CAGCCAGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGTTGTCGATCCT
*
27651676 GCTACCGCAACCCT
131 GCTGCCGCAACCCT
27651690 TAGTCCAGTC
Statistics
Matches: 248, Mismatches: 45, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
155 2 0.01
156 87 0.35
157 6 0.02
158 35 0.14
159 115 0.46
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CAGCCAGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGTTGTCGATCCT
GCTGCCGCAACCCTCGATCCGATCTAAT
Found at i:27652927 original size:26 final size:26
Alignment explanation
Indices: 27652891--27652944 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
27652881 CCGGTTCGAT
27652891 CTTAGACTGGGAATAAAC-TCTGTATG
1 CTTAGACTGGGAATAAACTTC-GTATG
* *
27652917 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
27652943 CT
1 CT
27652945 GAAGTCAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:27653462 original size:159 final size:157
Alignment explanation
Indices: 27653063--27653494 Score: 436
Period size: 158 Copynumber: 2.7 Consensus size: 157
27653053 CAGTCCTGCA
* *
27653063 GCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGGT-CTGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * *
27653128 CGAAACGAGCGTGCGGACACTCAACC-AGTCAGAGAGGCAGAATGCACAAGCCAAGGATCGGCCC
65 CGAAACGAGCGTACGGGCACTCAGCCGA-TCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCC
* * * **
27653192 GGTCCCCCCTGCGTGTTGTCGATCTTGCT
129 GGTCCCCCCTACGTGCTATCGATCTCACT
* * * **** * * *
27653221 GCCGCAACCCTTGGTCTGATCCATTCTTAGAC-TGGGAATGAACTCCGTACGCCTAAGTCAACCT
1 GCCACAACCCTCGGTCTGCT-GGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * * **
27653285 ACGAAACGAGCATTCGGGCACTGAGCCGATCGGGGAGGCATAATGTGCAAGCCAGGGATCGGTTC
64 ACGAAACGAGCGTACGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCC
*
27653350 GGTCCCCCTCTACGTGCTATCGGTCTCACT
129 GGTCCCCC-CTACGTGCTATCGATCTCACT
* * *
27653380 GCCACAACCCTCGGTTTGGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGGTCT-GCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * *
27653445 CGAAATGGGTGTACGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAG
65 CGAAACGAGCGTACGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAG
27653495 TCGGTGATCG
Statistics
Matches: 213, Mismatches: 55, Indels: 11
0.76 0.20 0.04
Matches are distributed among these distances:
157 4 0.02
158 104 0.49
159 102 0.48
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCCACAACCCTCGGTCTGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTACGGGCACTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCAAGGATCGGCCCGG
TCCCCCCTACGTGCTATCGATCTCACT
Found at i:27653512 original size:159 final size:157
Alignment explanation
Indices: 27653063--27653515 Score: 435
Period size: 159 Copynumber: 2.9 Consensus size: 157
27653053 CAGTCCTGCA
* *
27653063 GCCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGGT-CTGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * * *
27653128 CGAAACGAGCGTGCGGACACTCA-ACCAGTCAGAGAGGCAGAATGCACAAGCCAAGGATCGGCCC
65 CGAAACGAGCGTACGGGCACTCAGACGA-TCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGTCC
* * * **
27653192 GGTCCCCCCTGCGTGTTGTCGATCTTGCT
129 GGTCCCCCCTACGTGCTATCGATCTCACT
* * * **** * * *
27653221 GCCGCAACCCTTGGTCTGATCCATTCTTAGAC-TGGGAATGAACTCCGTACGCCTAAGTCAACCT
1 GCCACAACCCTCGGTCTGCT-GGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCC
* * * * * * * *
27653285 ACGAAACGAGCATTCGGGCACTGAGCCGATCGGGGAGGCATAATGTGCAAGCCAGGGATCGGTTC
64 ACGAAACGAGCGTACGGGCACTCAGACGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGTCC
*
27653350 GGTCCCCCTCTACGTGCTATCGGTCTCACT
129 GGTCCCCC-CTACGTGCTATCGATCTCACT
* * *
27653380 GCCACAACCCTCGGTTTGGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCCACAACCCTCGGTCT-GCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* * * * * * *
27653445 CGAAATGGGTGTACGGGCGCTCAGTCGATCGGAGAGGCAGAATGCGCAAGTC-GGTGATCGATCC
65 CGAAACGAGCGTACGGGCACTCAGACGATCGGAGAGGCAGAATGCGCAAGCCAGG-GATCGGTCC
27653509 GGTCCCC
129 GGTCCCC
27653516 TCTGTGTACT
Statistics
Matches: 229, Mismatches: 59, Indels: 13
0.76 0.20 0.04
Matches are distributed among these distances:
157 4 0.02
158 104 0.45
159 118 0.52
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCCACAACCCTCGGTCTGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
GAAACGAGCGTACGGGCACTCAGACGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGG
TCCCCCCTACGTGCTATCGATCTCACT
Found at i:27653604 original size:26 final size:26
Alignment explanation
Indices: 27653564--27653615 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
27653554 CGGTCTGATT
27653564 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
27653590 TTAGACTGGGGATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
27653616 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:27655277 original size:26 final size:26
Alignment explanation
Indices: 27655240--27655290 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27655230 CGGGCCGATC
27655240 TTAGACTGGGAATGAACTCCATATGG
1 TTAGACTGGGAATGAACTCCATATGG
*
27655266 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCATATG
27655291 CCTAAGCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGG
Found at i:27656484 original size:26 final size:26
Alignment explanation
Indices: 27656446--27656498 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27656436 GGCTCAAAAT
*
27656446 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27656472 CTTAGACAT-GGAATGATCTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27656498 C
1 C
27656499 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27656974 original size:26 final size:26
Alignment explanation
Indices: 27656945--27656997 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27656935 CCAATCCGAT
27656945 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27656971 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27656997 C
1 C
27656998 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27657385 original size:159 final size:158
Alignment explanation
Indices: 27656970--27657416 Score: 459
Period size: 159 Copynumber: 2.8 Consensus size: 158
27656960 AACTCCGTAT
* * * * *
27656970 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTACGAGTGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
* * * *
27657035 CCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTTGATCC
66 CCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* ** * * *
27657100 TACTGTCGCAACACTCGGTTCGGTTTGA
131 CACTACCACAACACTCGGTTCGGCTGGA
* * * *
27657128 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAG-AGTACGGGCGCTGA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCA-TACGGGCGCTCA
* * * * * * * * * * *
27657192 GTCTACCGAAGAGGCATAATGAGCAAGCCAGGGATCGACCCGGTCCCCTTCTGCATGCTGTCGAT
65 GCCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCC-CCTGCGTGCTGTCGAT
* *
27657257 CCCACTACCACAACCCTCGG-TCTGGCTGGG
129 CCCACTACCACAACACTCGGTTC-GGCTGGA
* * * * *
27657287 GCTTAGACAT-GGAATGATCTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCA
* * * * *
27657351 GCCGGTCGGAGAGGCAGATTGCGTAAGTCGGGGATTGGCCCGGTCCCCCCTGCGTGCTGCCGATC
65 GCCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATC
27657416 C
130 C
27657417 TACTGCCATA
Statistics
Matches: 227, Mismatches: 57, Indels: 10
0.77 0.19 0.03
Matches are distributed among these distances:
158 108 0.48
159 117 0.52
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
CACTACCACAACACTCGGTTCGGCTGGA
Found at i:27657394 original size:500 final size:500
Alignment explanation
Indices: 27656443--27657564 Score: 1391
Period size: 500 Copynumber: 2.2 Consensus size: 500
27656433 CGTGGCTCAA
* * * *
27656443 AATCTTAGACTGGGAATGAACTTCGTATGCTTAGACAT-GGAATGATCTCCGTATGCCTAAGCCA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGCTA
* * * *
27656507 ACCCACAAAACGAGCGTGCGGACGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGTCGAGGATGG
65 ACCCACGAAACGAGCGTACGGACGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATGG
* * * *
27656572 CTCGGTCCCCCCTACGTGCTATCGATCCTCCCACCACAACCCTCAATCAGATCTGATCTTAGACT
130 CCCGATCCCCCCTACGTGCTATCGATCCTACCACCACAACACTCAATCAGATCTGATCTTAGACT
* * * *
27656637 GGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCATGCGGGCATTAAGCTGGCCGAA
195 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCACTAAGCTGACCGAA
* * * * *
27656702 GAGGCATAATGCGCAAGCCAGGGATCAACCCGGTCCCCCTCTGCATGCTGTCGGTCCCGCTGCGA
260 GAGGCATAATGAGCAAGCCAGGGATCAACCCGGTCCCCCTCTGCATGCTGTCGATCCCACTACCA
*
27656767 CAACCCTCAGTCCGGCTGGGGCTTAGACATGGAGTGAACTCCCTATGCCTAAGCCAACCCACAAA
325 CAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAA
* **
27656832 ACAAGCGTACAGGTGCTCAGCCGATCGGAGAGGCAAAATGCGTAAGCCGAGGATCAGCCCGGT-C
390 ACAAGCATACAGGCACTCAGCCGATCGGAGAGGCAAAATGCGTAAGCCGAGGATCAGCCCGGTCC
* * * * * *
27656896 CCCC-GACGTGCTGTCGATCCTGCTGCCGTAACCCTTGGTCCAATCC
455 CCCCTG-CGTGCTGCCGATCCTACTGCCATAAACCTCGATCCAATCC
*
27656942 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCTAA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCTAA
* * *
27657007 CCCACGAAACGAGCGTAC-GAGTGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGCCGAGGATCG
66 CCCACGAAACGAGCGTACGGA-CGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGAT-G
* * *** * ** * *
27657071 GCCCGATCCCCCCTACGTGCTGTTGATCCTACTGTCGCAACACTCGGTTC-GGTTTGATCTTAGA
129 GCCCGATCCCCCCTACGTGCTATCGATCCTACCACCACAACACTC-AATCAGATCTGATCTTAGA
* * *
27657135 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAG-AGTACGGGCGCTGAGTCT-AC
193 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCA-TACGGGCACTAAG-CTGAC
* *
27657198 CGAAGAGGCATAATGAGCAAGCCAGGGATCGACCCGGTCCCCTTCTGCATGCTGTCGATCCCACT
256 CGAAGAGGCATAATGAGCAAGCCAGGGATCAACCCGGTCCCCCTCTGCATGCTGTCGATCCCACT
* * *
27657263 ACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGATCTCCCTATGCCTAAGCCAACCCA
321 ACCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* ** * * * * * * * **
27657328 CGAAACGGGCATGCGGGCACTCAGCCGGTCGGAGAGGCAGATTGCGTAAGTCGGGGATTGGCCCG
386 CAAAACAAGCATACAGGCACTCAGCCGATCGGAGAGGCAAAATGCGTAAGCCGAGGATCAGCCCG
* **
27657393 GTCCCCCCTGCGTGCTGCCGATCCTACTGCCATAAACCTCGATCCAGTTT
451 GTCCCCCCTGCGTGCTGCCGATCCTACTGCCATAAACCTCGATCCAATCC
* * * *
27657443 AATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATAAACTTCGTATGTCTAAG-TCA
1 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCT-A
* * * * *
27657507 ACCCACGAAACAAGCGTGTA-GG-CGCTTAGCCGACCAGAGAGGTAGGATGCGCAAGCCG
65 ACCCACGAAACGAGC--GTACGGACGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCG
27657565 GAGATCGAAC
Statistics
Matches: 530, Mismatches: 81, Indels: 22
0.84 0.13 0.03
Matches are distributed among these distances:
498 3 0.01
499 111 0.21
500 271 0.51
501 140 0.26
502 1 0.00
503 4 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (500 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCTAA
CCCACGAAACGAGCGTACGGACGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATGGC
CCGATCCCCCCTACGTGCTATCGATCCTACCACCACAACACTCAATCAGATCTGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCACTAAGCTGACCGAAG
AGGCATAATGAGCAAGCCAGGGATCAACCCGGTCCCCCTCTGCATGCTGTCGATCCCACTACCAC
AACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAA
CAAGCATACAGGCACTCAGCCGATCGGAGAGGCAAAATGCGTAAGCCGAGGATCAGCCCGGTCCC
CCCTGCGTGCTGCCGATCCTACTGCCATAAACCTCGATCCAATCC
Found at i:27657490 original size:26 final size:26
Alignment explanation
Indices: 27657446--27657497 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
27657436 CCAGTTTAAT
*
27657446 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* * *
27657472 CTTAGACTGGGGATAAACTTCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
27657498 TCTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:27658218 original size:26 final size:26
Alignment explanation
Indices: 27658182--27658232 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
27658172 GCTCAAAATC
27658182 TTAGACGTGGAATGAACTCCGTATGT
1 TTAGACGTGGAATGAACTCCGTATGT
27658208 TTAGACGTGGAATGAACTCCGTATG
1 TTAGACGTGGAATGAACTCCGTATG
27658233 CCTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACGTGGAATGAACTCCGTATGT
Found at i:27658589 original size:159 final size:157
Alignment explanation
Indices: 27658208--27658651 Score: 460
Period size: 159 Copynumber: 2.8 Consensus size: 157
27658198 CTCCGTATGT
*
27658208 TTAGACGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGTGCTCAGCC
1 TTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * **
27658273 GGCCGGAGAGGTAGAATGCGCAAGTCGGGGA-TGGCCCGGTCCCCCCTACATGCTGTCGATCCTT
65 GGCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACATGCTGCCGATCCCG
* *
27658337 CCACCACAACCCTCGGTCTAATCTGATC
130 CCACCACAACCCTCAGTCTAATCTGAGC
* * * * * * * *
27658365 TTAGACTAGGAATGAACTCCGTATGCATAAGTCAACCCGCGAAACAAGCATGCGGGCGTTGAGCC
1 TTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * * * * * * * *
27658430 GACCGAAGAGGCATAATGTGCAAGCCAGGGATTGACCTGGTCCCCCTTTGCGTGTTGCCGGTCCC
65 GGCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCC-CTACATGCTGCCGATCCC
** * *
27658495 GCTGCCACAACCCTCAGTCTTA-CTGGGGC
129 GCCACCACAACCCTCAGTCTAATCT-GAGC
* * *
27658524 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGGGGGTGCTCAGCC
1 TTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
* * * * * *
27658589 GGTCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
65 GGCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACATGCTGCCGATCC
27658652 TGTTGCTGGT
Statistics
Matches: 226, Mismatches: 56, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
156 1 0.00
157 78 0.35
158 27 0.12
159 119 0.53
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
TTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCG
GCCGAAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCCTACATGCTGCCGATCCCGC
CACCACAACCCTCAGTCTAATCTGAGC
Found at i:27659063 original size:159 final size:157
Alignment explanation
Indices: 27658718--27659164 Score: 474
Period size: 158 Copynumber: 2.8 Consensus size: 157
27658708 AATTCCGTAT
* * * * * *
27658718 GCTTAAACATGGAATGAACACCGTATGCCTAAGCCAACCTACGAAACGAGCGCGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCAAACC-ACGAAACGAGCGTGCGGGCGCT-AG
** * *
27658783 CCGGTCGAAGAGGCAAAATGCACAAGCCCGGGATCGACCCAGTCCCCTCTACGTGCT-ATCGATC
64 CCGACCGAAGAGGCAAAATGCACAAGCCAGGGATCGACCCGGTCCCCTCTACGTGCTGATCGATC
** *
27658847 CTACTACCGTAACCCTCAGTCTGGTCTGA
129 CTACTACCACAACCCTCAGTCTGGACTGA
* *
27658876 TCTTAGAC-TAGGAATGAACTCCATATGCCTAAGTCAAACCACGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAG-CAAACCACGAAACGAGCGTGCGGGCGCT-A
* * * * *
27658940 GCCGACCGGAGAGGCATAATGCACAAGCCAGGGATCAACCCGGTACCCCTCTACGTGCTGCT-GG
63 GCCGACCGAAGAGGCAAAATGCACAAGCCAGGGATCGACCCGGT-CCCCTCTACGTGCTGATCGA
* * *
27659004 TCTTACTACCACAACCCTCGGTCT-GACTGGG
127 TCCTACTACCACAACCCTCAGTCTGGACT-GA
* * * **
27659035 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTAAT
1 GCTTAGACATGGAATGAACTCCATATGCCTAAG-CAAACCACGAAACGAGCGTGCGGGCGCTAGC
* * * * *
27659100 CGACCGTATAGGCAAAATGCGCAAGCCGGGGATCGACCAGGTCCCC-CTTACGTGCTG-TCGATC
65 CGACCGAAGAGGCAAAATGCACAAGCCAGGGATCGACCCGGTCCCCTC-TACGTGCTGATCGATC
27659163 CT
129 CT
27659165 GCTGCTGTAA
Statistics
Matches: 240, Mismatches: 41, Indels: 17
0.81 0.14 0.06
Matches are distributed among these distances:
156 2 0.01
157 18 0.08
158 123 0.51
159 95 0.40
160 2 0.01
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCAAACCACGAAACGAGCGTGCGGGCGCTAGCC
GACCGAAGAGGCAAAATGCACAAGCCAGGGATCGACCCGGTCCCCTCTACGTGCTGATCGATCCT
ACTACCACAACCCTCAGTCTGGACTGA
Found at i:27659222 original size:26 final size:26
Alignment explanation
Indices: 27659193--27659245 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27659183 CTGATCCGAT
27659193 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27659219 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27659245 C
1 C
27659246 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27659388 original size:184 final size:183
Alignment explanation
Indices: 27659035--27659403 Score: 465
Period size: 184 Copynumber: 2.0 Consensus size: 183
27659025 TCTGACTGGG
*
27659035 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTAAT
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTAAC
* * *
27659100 CGACCGTATAGGCAAAATGCGCAAGCCGGGGATCGACCAGGTCCCCCTTACGTGCTGTCGATCCT
66 CGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCAGATCCCCCTTACGTGCTGTCGATCCT
* * *
27659165 GCTGCTGTAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
131 ACTGCTGTAACCCTTGGTCCGATCCGATCTTAAACTGGGAATGAACTCCGTAT
* * * ** *
27659218 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCT-A
* * * * * ** * *
27659282 GCCGACTGGAGAGGCAGAATGCGCAATCTGGGGATCGACTTGATCCCCCTTATGTGCTGTTGATC
64 ACCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCAGATCCCCCTTACGTGCTGTCGATC
* *
27659347 CTACTG-TGTCAACCCTCT-GTCCGATCTGATCTTAAACTGGGAATGAACTTCGTAT
129 CTACTGCTGT-AACCCT-TGGTCCGATCCGATCTTAAACTGGGAATGAACTCCGTAT
27659402 GC
1 GC
27659404 CTAAGTTAAC
Statistics
Matches: 158, Mismatches: 24, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
182 1 0.01
183 57 0.36
184 99 0.63
185 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTAAC
CGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCAGATCCCCCTTACGTGCTGTCGATCCT
ACTGCTGTAACCCTTGGTCCGATCCGATCTTAAACTGGGAATGAACTCCGTAT
Found at i:27659420 original size:500 final size:497
Alignment explanation
Indices: 27658179--27659820 Score: 1754
Period size: 500 Copynumber: 3.3 Consensus size: 497
27658169 GTGGCTCAAA
*
27658179 ATCTTAGAC-GTGGAATGAACTCCGTATGTTTAGAC-GTGGAATGAACTCCGTATGCCTAAGCCA
1 ATCTTAGACTG-GGAATGAACTCCGTATGCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCA
* * * * *
27658242 ACCCACGAAAGGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGTCGGGGATGG
64 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAA-TCGGGGATCG
* * * * * * ** * *
27658307 CCCGGTCCCCCCTACATGCTGTCGATCCTTCCACCACAACCCTCGGTCTAATCTGATCTTAGACT
128 ACCGATCCCCCTTACGTGCTGTCGATCCTACTACGTCAACCCTCAGTCTGATCTGATCTTAGACT
* * ** * *
27658372 AGGAATGAACTCCGTATGCATAAGTCAACCCGCGAAACAAGCATGCGGGCGTTGAGCCGACCGAA
193 AGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACCGAA
* * * * * * **
27658437 GAGGCATAATGTGCAAGCCAGGGATTGACCTGGTCCCCCTTTGCGTGTTGCCGGTCCCGCTGCCA
258 GAGGCATAATG-ACAAGCCAGGGATTAACCCGGT-CCCCTCTGCGTGCTGCTGGTCCTACTGCCA
* * *
27658502 CAACCCTCAGTCTTACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAA
321 CAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * * * *
27658567 ACGAGCGTGGGGGTGCTCAGCCGGTCGAAGAGGCAGAATACGCAAGCCGGGGATCGGCCCGGTCC
386 ACGAGCGTGCGGGCGCT-AACCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCC
* * * * * * **
27658632 CCCCTGCGTGCTGTCGATCCTGTTGCTGGTCTTACTACTGCAACCCTCGATCCGGTCTA
450 CCCTTGCGTGCTGTCGATCC---TGCT-G-----CT-C-GTAACCCTTGGTCTGATCCG
* * * *
27658691 ACCTTAGACTGGGAATGAATTCCGTATGCTTAAACAT-GGAATGAACACCGTATGCCTAAGCCAA
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** * * * * *
27658755 CCTACGAAACGAGCGCGTGGGCGCTCAGCCGGTCGAAGAGGCAAAATGCACAAGCCCGGGATCGA
65 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAA-TCGGGGATCGA
* * *
27658820 CCCAGT-CCCCTCTACGTGCTATCGATCCTACTACCGT-AACCCTCAGTCTGGTCTGATCTTAGA
129 CCGA-TCCCCCT-TACGTGCTGTCGATCCTACTA-CGTCAACCCTCAGTCTGATCTGATCTTAGA
* *
27658883 CTAGGAATGAACTCCATATGCCTAAGTCAAACCACGAAATGAGCGTGCGGGCGCTGAGCCGACCG
191 CTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACCG
* * * * *
27658948 GAGAGGCATAATGCACAAGCCAGGGATCAACCCGGTACCCCTCTACGTGCTGCTGGTCTTACTAC
256 AAGAGGCATAATG-ACAAGCCAGGGATTAACCCGGT-CCCCTCTGCGTGCTGCTGGTCCTACTGC
27659013 CACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
319 CACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * * * * * *
27659078 AAACGAACGTGCGGGCGCTAATCGACCGTATAGGCAAAATGCGCAAGCCGGGGATCGACCAGGTC
384 AAACGAGCGTGCGGGCGCTAACCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTC
*
27659143 CCCCTTACGTGCTGTCGATCCTGCTGCT-GTAACCCTTGGTCTGATCCG
449 CCCCTTGCGTGCTGTCGATCCTGCTGCTCGTAACCCTTGGTCTGATCCG
*
27659191 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
27659256 CCACGAAATGAGTGTGCGGGTGCTCAGCCGACTGGAGAGGCAGAATGCGCAATCTGGGGATCGAC
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAATC-GGGGATCGAC
* * * ** * * * *
27659321 TTGATCCCCCTTATGTGCTGTTGATCCTACTGTGTCAACCCTCTGTCCGATCTGATCTTAAACTG
130 -CGATCCCCCTTACGTGCTGTCGATCCTACTACGTCAACCCTCAGTCTGATCTGATCTTAGACTA
* * * *
27659386 GGAATGAACTTCGTATGCCTAAGTTAACCCACGAAATGAGCGTGCGGGCACTGAGCCGGCCGAAG
194 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACCGAAG
* * * *
27659451 AGGCATAATGAGCAAGACGGGGATTAGCCCGGTCCCCTTCTGTGTGCTG-TCGGTCCTACTGCCA
259 AGGCATAATGA-CAAGCCAGGGATTAACCCGGTCCCC-TCTGCGTGCTGCT-GGTCCTACTGCCA
* * *
27659515 CAAGCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
321 CAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * ** ** * *
27659580 ACGGGCGTGCGGGCGCTCAGCTGGCCGGCGAGGCAGAATGATCAAGCCAGGGATCGACCCGATCC
386 ACGAGCGTGCGGGCGCT-AACCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCC
* ** * * *
27659645 CCCTTGCGTGCTGCCGATCCTGCTG-TCACAAACCTTGGTC-CAGTTCG
450 CCCTTGCGTGCTGTCGATCCTGCTGCTCGTAACCCTTGGTCTGA-TCCG
* * * * *
27659692 ATATTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
27659757 CCACAAAACGAGCGTGCAGGCGCTCAGCTGACCAGAGAGGCAGGATGCGTAAGTCGGAGATCGA
66 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAA-TCGGGGATCGA
27659821 ACAGGTGGTA
Statistics
Matches: 947, Mismatches: 165, Indels: 47
0.82 0.14 0.04
Matches are distributed among these distances:
499 10 0.01
500 346 0.37
501 187 0.20
502 2 0.00
503 2 0.00
508 1 0.00
509 4 0.00
512 167 0.18
513 227 0.24
514 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (497 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAATCGGGGATCGACC
GATCCCCCTTACGTGCTGTCGATCCTACTACGTCAACCCTCAGTCTGATCTGATCTTAGACTAGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAGCCGACCGAAGAG
GCATAATGACAAGCCAGGGATTAACCCGGTCCCCTCTGCGTGCTGCTGGTCCTACTGCCACAACC
CTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG
CGTGCGGGCGCTAACCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTG
CGTGCTGTCGATCCTGCTGCTCGTAACCCTTGGTCTGATCCG
Found at i:27659487 original size:158 final size:159
Alignment explanation
Indices: 27659219--27659670 Score: 367
Period size: 159 Copynumber: 2.9 Consensus size: 159
27659209 ACTCCGTATG
* * * **
27659219 CTTAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGTGCTCAGC
1 CTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
* * * * * ** *
27659284 CGACTGGAGAGGCAGAATGCGCAATCTGGGGATCGACTTGATCCCCCT-TATGTGCTGTTGATCC
66 CGACCGAAGAGGCAGAATGAGCAAACTGGGGATAGACCCGATCCCCCTCTATGTGCTGTCGATCC
27659348 TACTGTGTCAACCCTCTGTCCGATCTGAT
131 TACTGTGTCAACCCTCTGTCCGATCTGAT
* ** *
27659377 CTTAAACTGGGAATGAACTTCGTATGCCTAAGTTAACCCACGAAATGAGCGTGCGGGCACTGAGC
1 CTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
* * * * * *
27659442 CGGCCGAAGAGGCATAATGAGCAAGAC-GGGGATTAG-CCCGGTCCCCTTCTGTGTGCTGTCGGT
66 CGACCGAAGAGGCAGAATGAGCAA-ACTGGGGA-TAGACCCGATCCCCCTCTATGTGCTGTCGAT
*** * * * * **
27659505 CCTACTGCCACAAGCCTCGGTCTG-GCTGGGG
129 CCTACTGTGTCAACCCTCTGTCCGATCT-GAT
* * * * * *
27659536 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 CTTAAAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* * ** * * ** * ** *
27659600 CTGGCCGGCGAGGCAGAATGATCAAGCCAGGGATCGACCCGATCCCCCT-TGCGTGCTGCCGATC
65 CCGACCGAAGAGGCAGAATGAGCAAACTGGGGATAGACCCGATCCCCCTCTATGTGCTGTCGATC
*
27659664 CTGCTGT
130 CTACTGT
27659671 CACAAACCTT
Statistics
Matches: 230, Mismatches: 57, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
158 110 0.48
159 119 0.52
160 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (159 bp):
CTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAGC
CGACCGAAGAGGCAGAATGAGCAAACTGGGGATAGACCCGATCCCCCTCTATGTGCTGTCGATCC
TACTGTGTCAACCCTCTGTCCGATCTGAT
Found at i:27659724 original size:26 final size:26
Alignment explanation
Indices: 27659695--27659746 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27659685 CAGTTCGATA
*
27659695 TTAGACTAGGAATGAACTTCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
* *
27659721 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
27659747 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:27660765 original size:26 final size:26
Alignment explanation
Indices: 27660725--27660776 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27660715 CAGTTCAATA
27660725 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
* *
27660751 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
27660777 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:27662054 original size:26 final size:26
Alignment explanation
Indices: 27662004--27662056 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27661994 TACTGTCGAT
**
27662004 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
27662030 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27662056 C
1 C
27662057 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27662765 original size:26 final size:26
Alignment explanation
Indices: 27662727--27662779 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27662717 GGCTCAAAAT
*
27662727 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27662753 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27662779 C
1 C
27662780 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27663062 original size:159 final size:159
Alignment explanation
Indices: 27662752--27663041 Score: 370
Period size: 159 Copynumber: 1.8 Consensus size: 159
27662742 AACTCTGTAT
* * *
27662752 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCCCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCCCAG
* * * * * *
27662817 CCAACCGAAAAGGCATAATGGGCAAGTCGGGGATCGGCCTAGTCCCCCTCTGCATGCTGCCGGTC
66 CCAACCGAAAAGGCAGAATGGGCAAGTCGAGGACCGACCTAGTCCCCCTCTGCATGATGCCGATC
27662882 CCACTACCACAACCCTCAGTCCAATTGGG
131 CCACTACCACAACCCTCAGTCCAATTGGG
* *
27662911 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGGCGCCCA
*** * * * *
27662976 GCCGGTCGAAGAGGCAGAATGTGCAAG-CTGAGGACCGACTCT-GTCCCCCT-TGCGTGATGTCG
65 GCCAACCGAAAAGGCAGAATGGGCAAGTC-GAGGACCGAC-CTAGTCCCCCTCTGCATGATGCCG
27663038 ATCC
128 ATCC
27663042 TGCTGTCGTA
Statistics
Matches: 110, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
159 64 0.58
160 44 0.40
161 2 0.02
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCCCAG
CCAACCGAAAAGGCAGAATGGGCAAGTCGAGGACCGACCTAGTCCCCCTCTGCATGATGCCGATC
CCACTACCACAACCCTCAGTCCAATTGGG
Found at i:27663100 original size:26 final size:26
Alignment explanation
Indices: 27663071--27663123 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27663061 CCGGTCTGAT
*
27663071 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
27663097 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27663123 C
1 C
27663124 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27663804 original size:26 final size:26
Alignment explanation
Indices: 27663766--27663818 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27663756 GGCTCAATAT
27663766 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27663792 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27663818 C
1 C
27663819 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27664586 original size:26 final size:26
Alignment explanation
Indices: 27664547--27664596 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
27664537 ATCCGATCTT
27664547 AGACTGGGAATGAACTCCATATGCTC
1 AGACTGGGAATGAACTCCATATGCTC
** *
27664573 AGACTGGGGTTGAACTCCGTATGC
1 AGACTGGGAATGAACTCCATATGC
27664597 CTAAGCCAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTC
Found at i:27664737 original size:184 final size:184
Alignment explanation
Indices: 27664400--27664924 Score: 589
Period size: 184 Copynumber: 2.9 Consensus size: 184
27664390 TAGACATGGA
* * * * *
27664400 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGG-GCTC-AGCTAGC-CGGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC-GGGCACTCAACCGA-CTCGGAG
* * ** * * *
27664462 -GGCAGAATGCGCAAGTTGGGGATCGGCCCATCCCCTCTGCATGCTGCCAATCCTGCTACCGCAA
64 AGGCAGAATGCGCAAGTCGGGGATCGACCGGTCCCCACTGCATGCTGCCGATCCTGCTACCACAA
*
27664526 CCCTCGGACCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTCAGACTGGGG
129 CCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTCAGACTGGGG
* **
27664582 TTGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCACTCAACCGA-TCGGAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACTCGGAGAG
* * * * *
27664646 GCACAATGCGTAAGTCGGGGATCGACCTGGTCCCCACTGCGTGCTACCGATCCTACTACCACAAC
66 GCAGAATGCGCAAGTCGGGGATCGACC-GGTCCCCACTGCATGCTGCCGATCCTGCTACCACAAC
* *
27664711 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGG
130 CCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTCAGACTGGGG
* * * * * ** *
27664766 ATGAATTCTGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGACACTCAGTCGACTAGG-GAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACTCGGAGAG
* * * * * *
27664830 GTAGGATGCGCAA-TCTGGGGA-CTAACCCGGTCCCCCCTGCATGCTGTCGATCCTGCTACCCCA
66 GCAGAATGCGCAAGTC-GGGGATC-GA-CCGGTCCCCACTGCATGCTGCCGATCCTGCTACCACA
* *
27664893 ACCCTCGGTCTGATCTGATCTTAGACTGGGAA
128 ACCCTCGGTCCGATCCGATCTTAGACTGGGAA
27664925 ACGAGCGTTT
Statistics
Matches: 286, Mismatches: 48, Indels: 16
0.82 0.14 0.05
Matches are distributed among these distances:
181 3 0.01
182 45 0.16
183 30 0.10
184 203 0.71
185 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (184 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACTCGGAGAG
GCAGAATGCGCAAGTCGGGGATCGACCGGTCCCCACTGCATGCTGCCGATCCTGCTACCACAACC
CTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTCAGACTGGGG
Found at i:27665228 original size:26 final size:26
Alignment explanation
Indices: 27665199--27665249 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
27665189 CGATCTGATC
27665199 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
* *
27665225 TTAGACTGGGGATGAGCTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
27665250 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:27665595 original size:26 final size:26
Alignment explanation
Indices: 27665554--27665606 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27665544 CCAATCCAAT
27665554 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
27665580 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27665606 C
1 C
27665607 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:27665606 original size:356 final size:356
Alignment explanation
Indices: 27664944--27665691 Score: 909
Period size: 356 Copynumber: 2.1 Consensus size: 356
27664934 TAGGGGCTGA
* * * * * ** * **
27664944 GCCGACCAGAGAGGCATAATGTGCAAGTTC-GGGATCAGCCCGGTCCCTTTCTGCGTGCTGTCGG
1 GCCGATCAGAGAGGCATAATGCGCAAG-CCAGGGATCAGCCCAGCCCCCCTCTGCGTGCTGCCAA
*
27665008 TCCCGCTACGACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
65 TCCCGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
** * * *
27665073 CAAACCACGAAACGGGCGTGCGGGCACTCAGCTGGCTGGAAAGGTAGAATGCGCAAGCTGAGGAT
130 CAAACCACGAAACGAACGTGCGGGCACTCAGCTGGCTGGAAAGGCAGAATGCACAAGCAGAGGAT
* * * * * **
27665138 CAGCCCGGTCCCCCTTGTGTGCTATCGATCCTACTGTCGCAACCCTCGATCCGATCTGATCTTAG
195 CAGCCCGGTCCCCCCTGCGTGCTATCAATACTACTGTCGCAACCCTCGATCCAATCCAATCTTAG
* * * *
27665203 ACTGGGAATGAACTCCGTATGTTTAGACTGGGGATGAGCTCCGTATGCCTAAGTCAACCCATGAA
260 ACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * *
27665268 ATGAGCGTGCGGGTGCTCAGCAGATCGGAGAG
325 ATGAGCATGCGAGAGCTCAGCAGACCGAAGAG
*
27665300 GCCGATCAGAGAGGCATAATGCGTAAGCCAGGGATCAGCCCAGCCCCCCTCTGCGTGCTGCCAAT
1 GCCGATCAGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCAGCCCCCCTCTGCGTGCTGCCAAT
* * * * **
27665365 CCTGCTGCCACAACCCTCGGTTCGGCTAGGGG-TTAGACATGGAATGAACTCTGTATGCCTAATG
66 CCCGCTACCACAACCCTCGGTCCAGCT-GGGGCTTAGACATGGAATGAACTCCCTATGCCTAA-G
* *
27665429 -C-AACATACGAAACGAACGTGCGGG-AGCTCAGCTGGCTGGAGAGGCAGAATGCACAAGTCAG-
129 CCAAAC-CACGAAACGAACGTGCGGGCA-CTCAGCTGGCTGGAAAGGCAGAATGCACAAG-CAGA
* * *
27665490 GGATCAGCTCGGTCCCCCCTGCGTGCTGTCAATACTGCTG-CTGCAACCCTC-AGTCCAATCCAA
191 GGATCAGCCCGGTCCCCCCTGCGTGCTATCAATACTACTGTC-GCAACCCTCGA-TCCAATCCAA
*
27665553 TCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACC
254 TCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
* * *
27665618 CACGAAATGAGCATGCGAGAGCTTAGCCGGCCGAAGAG
319 CACGAAATGAGCATGCGAGAGCTCAGCAGACCGAAGAG
* * *
27665656 GCCGATCGGAGAGACAAAATGCGCAAGCCAGGGATC
1 GCCGATCAGAGAGGCATAATGCGCAAGCCAGGGATC
27665692 GACCCGATCC
Statistics
Matches: 332, Mismatches: 52, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
355 7 0.02
356 318 0.96
357 7 0.02
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (356 bp):
GCCGATCAGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCAGCCCCCCTCTGCGTGCTGCCAAT
CCCGCTACCACAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
AAACCACGAAACGAACGTGCGGGCACTCAGCTGGCTGGAAAGGCAGAATGCACAAGCAGAGGATC
AGCCCGGTCCCCCCTGCGTGCTATCAATACTACTGTCGCAACCCTCGATCCAATCCAATCTTAGA
CTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
TGAGCATGCGAGAGCTCAGCAGACCGAAGAG
Found at i:27666089 original size:158 final size:157
Alignment explanation
Indices: 27665789--27666287 Score: 370
Period size: 158 Copynumber: 3.2 Consensus size: 157
27665779 ACTACATATG
* * * * *
27665789 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCAAGCACTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCCCAG
* * * * * * * * * * ** * * * * *
27665853 CTGGCTGGAAAAGGTAGAATGCGCAAGCCGAGGACCAGCCTGGTCCCCCCTACGTGCTGTCGAT-
65 CAGAC-CGAAGAGGCAAAATGCACAAGCCGGGGATCGGGTTGATCCCCTCTACATGCTATCAATC
*
27665917 -C-CTGCTACGTAACCCTCAGTCCAGTCTGAT
129 CCACTGCCAC--AACCCTC-GTCCAGTCTGAT
* * * * **
27665947 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTTC-GATCGCTGAG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAG-GCGCCCAG
* * * * * **
27666011 CAGGCC-AGAGAGGCATAATGCACAAGTCGGGGATC-GGTTCGGTCCCCTCTGCATGCTATCGGT
65 CAGACCGA-AGAGGCAAAATGCACAAGCCGGGGATCGGGTT-GATCCCCTCTACATGCTATCAAT
**
27666074 CCCACTGCCACAACCCTCGATCCAG-CTGGGG
128 CCCACTGCCACAACCCTCG-TCCAGTCT-GAT
* * *
27666105 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCAGGCGCCCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCCCAG
* * *
27666169 CCGACCGAAGAGGCAAAATGCACAAGCCGGGGATCGGGTTGATCCCCTCTACGTGCTATCAATTC
65 CAGACCGAAGAGGCAAAATGCACAAGCCGGGGATCGGGTTGATCCCCTCTACATGCTATCAATCC
* * * *
27666234 TACTGTCGCAACCCTCGGTCC-GATCCGAT
130 CACTGCCACAACCCTC-GTCCAG-TCTGAT
*
27666263 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
27666288 ACTTAGACTG
Statistics
Matches: 271, Mismatches: 53, Indels: 34
0.76 0.15 0.09
Matches are distributed among these distances:
156 3 0.01
157 43 0.16
158 209 0.77
159 10 0.04
160 6 0.02
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCCCAGC
AGACCGAAGAGGCAAAATGCACAAGCCGGGGATCGGGTTGATCCCCTCTACATGCTATCAATCCC
ACTGCCACAACCCTCGTCCAGTCTGAT
Found at i:27666292 original size:26 final size:26
Alignment explanation
Indices: 27666263--27666313 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
27666253 CCGATCCGAT
27666263 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
**
27666289 CTTAGACTGGGGGTGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
27666314 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:27667145 original size:158 final size:157
Alignment explanation
Indices: 27666644--27667145 Score: 498
Period size: 158 Copynumber: 3.2 Consensus size: 157
27666634 AACTCGTATG
* * * *
27666644 CTTAGACATGGAATGAACTCCGTATGCGTAAGCTAACCCACGAAACAAGCGTGTCGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGT-ACGGTGCTCAGC
** *
27666709 CTACCGGAGAGGCAGAATGCG-TAAG-CTGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATC
65 CGGCCGGAGAGGCAGAATGCGCT-AGTC-GGGGATCGGCCCGGTCCCCTCTACGTGCTGTCGATC
* * *
27666772 CTACTACCGTAACCCTCGGTCCGGTCTGAT
128 CTACTGCCGCAACCCTCGGTCCGGTCTAAT
* * * * *
27666802 CTTAGA-TTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAACGAGCGTGTA-GGCGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC--GTACGGTGCTCA
* * * * * * * * *
27666865 GCCGGCCGGAGCGGCATAATGCGCAAGTTGGGGATTGGCCCGATCCCTTTCTACGTGCT-ACAGG
63 GCCGGCCGGAGAGGCAGAATGCGCTAGTCGGGGATCGGCCCGGTCCC-CTCTACGTGCTGTC-GA
* * * * * **
27666929 TCTTGCTGCCACAACCCTCAGTCCAG-CTAGGG
126 TCCTACTGCCGCAACCCTCGGTCCGGTCTA-AT
* *
27666961 CTTAGACATGGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAATGGGCGTACGGGTGCTCAG
1 CTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCACGAAACGAGCGTAC-GGTGCTCAG
* * * *
27667025 CAGGCCAGAGAGGCAGAATGCGCTAGTCGGGGATCGGCCTGGTCCCCTCTACATGCTGTCGATCC
64 CCGGCCGGAGAGGCAGAATGCGCTAGTCGGGGATCGGCCCGGTCCCCTCTACGTGCTGTCGATCC
27667090 TACTGCCGCAACCCTCGGTCCGGTCTAAT
129 TACTGCCGCAACCCTCGGTCCGGTCTAAT
*
27667119 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
27667146 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 58, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
157 6 0.02
158 142 0.53
159 118 0.44
160 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGTGCTCAGCC
GGCCGGAGAGGCAGAATGCGCTAGTCGGGGATCGGCCCGGTCCCCTCTACGTGCTGTCGATCCTA
CTGCCGCAACCCTCGGTCCGGTCTAAT
Found at i:27667868 original size:25 final size:26
Alignment explanation
Indices: 27667840--27667891 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27667830 GACTCAAAAT
*
27667840 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
27667865 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
27667891 C
1 C
27667892 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:27668223 original size:26 final size:26
Alignment explanation
Indices: 27668183--27668260 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
27668173 TGGTCTGATG
* *
27668183 TTAGACTAGGAATGAACTTCGTATGC
1 TTAGACTGGGGATGAACTTCGTATGC
*
27668209 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGGATGAACTTCGTATGC
27668235 TTAGACTGGGGATGAAC-TCTGTATGC
1 TTAGACTGGGGATGAACTTC-GTATGC
27668261 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
25 1 0.02
26 46 0.98
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGGATGAACTTCGTATGC
Found at i:27668445 original size:26 final size:26
Alignment explanation
Indices: 27668416--27668468 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27668406 CCAATCCGAT
27668416 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
27668442 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27668468 C
1 C
27668469 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27668740 original size:159 final size:155
Alignment explanation
Indices: 27668442--27668943 Score: 467
Period size: 159 Copynumber: 3.2 Consensus size: 155
27668432 ACTCCGTATG
* *
27668442 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCATGAAATGAGCGTGCGGGCGCTCCA-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC-CACGAAATGAGCGTTCGGGCGCT-CAG
* * * * * * *
27668506 CCGGTCGGACAGGTATAATGCACAAGTCGGGGA-CTGACCCGATCCCCCTTTGCGTGCTATCGAT
64 CCGGTCAGAGAGGCATAATGCGCAAGCCGAGGATC-GACCCGAT-CCCCTTTACGTGCT-TCGAT
* *
27668570 CCTGCTACCACAACCCTCGGTCCGATCCGAT
126 CCTGCTGCCACAACCCTCGATCCG-TCCGAT
* * * * *
27668601 CTTAGAC-TGGGAATGAATTCTGTATGCCTAAGTCAATCCACGAAATGAGCGTTCAGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA-CCACGAAATGAGCGTTCGGGCGCTCAG
* *
27668665 CCGGCCAGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCACCTTTACGTGCTGTCGGTC
64 CCGGTCAGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCC-CCTTTACGTGCT-TCGATC
** * * **
27668730 CCACTGCCACAACCCTCAGTTCGGTTTGGAT
127 CTGCTGCCACAACCCTC-GATCCG-TCCGAT
* * * *
27668761 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAGATGGGCGTGT-GGGCACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CCACGAAATGAGCGT-TCGGGCGCTCAG
* * ** ** *
27668824 CCGATCAGAGAGGCAGAATATGCAAGCCGAGGATCGACCCGATCCCCACTACGTGCTACTGATCC
64 CCGGTCAGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCTTTACGTGCTTC-GATCC
* *
27668889 TGCTGTCGCAACCCTCGATCCTGTCCGAT
128 TGCTGCCACAACCCTCGATCC-GTCCGAT
*
27668918 CTTAGAC-TAGGAATGAACTTCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
27668944 TTTAGACTGG
Statistics
Matches: 277, Mismatches: 54, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
157 9 0.03
158 52 0.19
159 204 0.74
160 12 0.04
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.21
Consensus pattern (155 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCACGAAATGAGCGTTCGGGCGCTCAGCC
GGTCAGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCTTTACGTGCTTCGATCCTGC
TGCCACAACCCTCGATCCGTCCGAT
Found at i:27669681 original size:26 final size:26
Alignment explanation
Indices: 27669639--27669691 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
27669629 GTCTCAAACT
*
27669639 CTTAGACTGGGAGTGAAC-CTCGTATG
1 CTTAGACTGGGAATGAACTC-CGTATG
27669665 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27669691 C
1 C
27669692 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27669858 original size:26 final size:26
Alignment explanation
Indices: 27669822--27669874 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27669812 CTGGTTAGAT
27669822 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
27669848 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
27669874 C
1 C
27669875 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:27670575 original size:26 final size:26
Alignment explanation
Indices: 27670539--27670591 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27670529 CCGGTTCGAT
*
27670539 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
27670565 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
27670591 C
1 C
27670592 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Done.