Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167826.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 36299135
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Warning! 357000 characters in sequence are not A, C, G, or T
File 291 of 402
Found at i:27670739 original size:183 final size:182
Alignment explanation
Indices: 27670393--27671127 Score: 613
Period size: 183 Copynumber: 3.9 Consensus size: 182
27670383 TAGACATGGA
* * * * * ** *
27670393 ATGAACTCTCTATGCCTAAGCCAACCCATGAAACGGGCGTGTGGGTGCTCAATCGGTCGGAGAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGG
* * * * * *
27670458 CCGAAAGCCTAAGCTGAGAATC-GACTCGGTCCCCCCTACGTGCTGCTGATCCTACTGTCGTAAC
66 CAGAATGCCTAAGC-GAGGATCAG-CTCGAT-CCCCCTACGTGCTGATGATCCTACTGTCGCAAC
* * * *
27670522 CCTTCGTCCGGTTCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGG
128 CCTTCGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGG
* * *
27670577 ATGAACTCTGTATGCCTAGGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGCCGGCCGAAGAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGG
* *
27670642 CAGAATGCGTAAGTCGAGGATCAGCTCGATCCCCCTGCGTGCT-ATGGATCCTACTGTCGCAA-C
66 CAGAATGCCTAAG-CGAGGATCAGCTCGATCCCCCTACGTGCTGAT-GATCCTACTGTCGCAACC
* * *
27670705 TTTCGATTCGGTCCGATCTTAGACTGTGAATGAACTCCGTATGCTTAGACCGGGG
129 CTTCG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGG
* ** *
27670760 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAACTGGAGAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGG
* * * * * * *
27670825 CATAATGCTTAAGCCGGGGATCAACTCGATCCCCTTTACATGCTG-TCGATCCTGTTGCTGGTCC
66 CAGAATGCCTAAG-CGAGGATCAGCTCGATCCCC-CTACGTGCTGAT-GATCC---TACT-GT-C
* * * * * **
27670889 TGCTATCGTAACCC-TCGATCCGGTCTGATCTTAGATTGAGAATGAACTTCGTATCCTTAGACAT
123 -G----C--AACCCTTCG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCG
*
27670953 GGA
180 GGG
** * ** * *
27670956 ATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAATCGACCGAAGAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGG
* * * * * * * * *
27671021 TAGAATGCGC-AAGCCAGGGATC-GGTCCATCCCCCCTGCCTGCTGTTGATCTTGCTGTCGCAAC
66 CAGAATGC-CTAAGCGA-GGATCAGCTCGAT-CCCCCTACGTGCTGATGATCCTACTGTCGCAAC
* *
27671084 CC-TCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGC
128 CCTTC-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
27671128 CTAAGTCAAC
Statistics
Matches: 448, Mismatches: 79, Indels: 49
0.78 0.14 0.09
Matches are distributed among these distances:
182 6 0.01
183 195 0.44
184 88 0.20
185 3 0.01
187 3 0.01
188 2 0.00
189 2 0.00
190 2 0.00
191 2 0.00
192 4 0.01
194 1 0.00
195 16 0.04
196 123 0.27
197 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (182 bp):
ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGG
CAGAATGCCTAAGCGAGGATCAGCTCGATCCCCCTACGTGCTGATGATCCTACTGTCGCAACCCT
TCGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACCGGGG
Found at i:27670751 original size:26 final size:26
Alignment explanation
Indices: 27670722--27670774 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27670712 TCGGTCCGAT
* *
27670722 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
*
27670748 CTTAGACCGGGGATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
27670774 C
1 C
27670775 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:27671472 original size:880 final size:889
Alignment explanation
Indices: 27669638--27671489 Score: 2088
Period size: 880 Copynumber: 2.1 Consensus size: 889
27669628 TGTCTCAAAC
* * *
27669638 TCTTAGACTGGGAGTGAACCTCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
1 TCTTAGACTGGGAATGAA-CTCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * *
27669702 CCACGAAACGAGCGTGTAGGTGCTCAGACAGCCAGAGAGGTAGATGCGTAAGCCGGGGATCTGCT
64 CCACGAAACGAGCGTGCAGGAGCTCAGACAGCCAGAGAGGCAGATGCGTAAGCCGAGGATCAGCT
* *
27669767 CGATCCGCCCTACGTGCTGCTGATCCTACTACTGCAACCCTCAGTCTGGTTAGATCTTAGACTGG
129 CGATCCGCCCTACGTGCTGATGATCCTACTACTGCAACCCTCAGTCTGGTCAGATCTTAGACTGG
* * * *
27669832 GAATGAACTTCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTTAACCCACGAAACGAG
194 GAATGAACTCCGTATGCTTAGACCGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* ***
27669897 TGTACGAGCACTCAGCCAGCCAGAGAGGTCGACTAGAGAGGCAGAATGCGCAAGCCAGGGATTGG
259 CGTACGAG-ACT-AGCCAGCC--A-A----GACTAGAGAGGCAGAATGCGCAAGCCAGGGATCAA
* * *
27669962 CCCGGTCCCCCCTACGTGCTGTCGATCTGCTGCTGGTGCTGCCTATCTAACCCTAGCGTCTAGGT
315 CCCGATCCCCCCTACATGCTGTCGATCTGCTGCTGGTCCTGCCTATCTAACCCTA-CGTCTAGGT
* * * *
27670027 CTGATCTTAGACTGCGGACTTAACTCCGTAATTGCTTAGACATGGAATGAACTCCATATGCCTAA
379 CTGATCTTAGACTGCAGAATGAACTCCGTAATTCCTTAGACATGGAATGAACTCCATATGCCTAA
* * * * * * **
27670092 GCCAACCCACGAAAATGACTGTTTAGGGCCCTTAGTCAATCGGAGAGGCAGAATCCGCAAGCTGG
444 GCCAACCCACGAAAACGACTGTTGAGGGCCCTCAATCAACCGAAGAGGCAGAATCCGCAAGCCAG
* * * * * * **
27670157 GGGTCGACCCGATCCCTCCTTGCGTGCTGTCAATCCTGCTACCGTAACCCTCGGTCTAGTCTGAT
509 GGATCGACCCGATCCCTCCCTGCCTGCTGTCAATCCTGCTACCGCAACCCTCAGTCGAGTCCAAT
* *
27670222 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCACTGAGC
574 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGAGCACTGAGC
* * * * * *
27670287 CGACCGGAGAGGCATAATGCACAGGCCGGGGATCGTCTCGATCCCCCTCTATGTGCTGCCTGTCC
639 CGACCGGAGAGGCATAATGCACAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTGCCGGTCC
* * * *
27670352 CGCTGCCACAACCATTGGTCTAGCTGGGTCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAA
704 CGCTGCCACAACCATCGGTCGAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * *
27670417 CCCATGAAACGGGCGTGTGGGTGCTCAATCGGTCGGAGAGGCCGAAAGCCTAAGCTGAGAATCGA
769 CCCATGAAACGGGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAAAGCCTAAGCTGAGAATCGA
** * *
27670482 CTCGGTCCCCCCTACGTGCTGCTGATCCTACTGTCGTAACCCTTCGTCCGGTTCGA
834 CTCGGTCCCCCCTACGTGCTGCTGATCCTACTGTCACAACCCTTCGTCCAGTCCGA
* * *
27670538 TCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAGGTCAACC
1 TCTTAGACTGGGAATGAACTC-GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
* * * *
27670603 CACGAAACGAGCGTGCGGGAGCTCAGCCGGCC-GAAGAGGCAGAATGCGTAAGTCGAGGATCAGC
65 CACGAAACGAGCGTGCAGGAGCTCAGACAGCCAG-AGAGGCAG-ATGCGTAAGCCGAGGATCAGC
* * ** * *
27670667 TCGATCC-CCCTGCGTGCT-ATGGATCCTACT-GTCGCAACTTTCGATTC-GGTCCGATCTTAGA
128 TCGATCCGCCCTACGTGCTGAT-GATCCTACTACT-GCAACCCTC-AGTCTGGTCAGATCTTAGA
*
27670728 CTGTGAATGAACTCCGTATGCTTAGACCGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
190 CTGGGAATGAACTCCGTATGCTTAGACCGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * ** * *
27670793 CGAGCGTGCG-G-GT-GCTCAGCC-A-ACTGGAGAGGCATAATGCTTAAGCCGGGGATCAACTCG
255 CGAGCGTACGAGACTAGC-CAGCCAAGACTAGAGAGGCAGAATGCGCAAGCCAGGGATCAACCCG
** * *
27670853 ATCCCCTTTACATGCTGTCGATCCTGTTGCTGGTCCTG-CTATCGTAACCCT-CGATC-CGGTCT
319 ATCCCCCCTACATGCTGTCGAT-CTGCTGCTGGTCCTGCCTATC-TAACCCTACG-TCTAGGTCT
* *
27670915 GATCTTAGATTG-AGAATGAACTTCGT-A-TCCTTAGACATGGAATGAACTCCATATGCCTAAGC
381 GATCTTAGACTGCAGAATGAACTCCGTAATTCCTTAGACATGGAATGAACTCCATATGCCTAAGC
* ** * * *
27670977 CAACCCACG-AAACGAGC-G-TGCGGGTGCTCAATCGACCGAAGAGGTAGAATGCGCAAGCCAGG
446 CAACCCACGAAAACGA-CTGTTGAGGGCCCTCAATCAACCGAAGAGGCAGAATCCGCAAGCCAGG
** ** * **
27671039 GATCGGTCC-ATCCC-CCCTGCCTGCTGTTGATCTTGCTGTCGCAACCCTCAGTCCGA-TCCAAT
510 GATCGACCCGATCCCTCCCTGCCTGCTGTCAATCCTGCTACCGCAACCCTCAGT-CGAGTCCAAT
* **
27671101 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGAGTGCTGAGC
574 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGAGCACTGAGC
* * * * * *
27671166 CGACTGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCACTTTTACGTGCTGTCGGTC
639 CGACCGGAGAGGCATAATGCACAAGCCGAGGATCGACCCGATCCC-CCTCTACGTGCTGCCGGTC
* *
27671231 CCGTTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
703 CCGCTGCCACAACCATCGGT-CGAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * *
27671295 AACCCATGAAACGGGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGCAC-AAG-TCGGGGA
767 AACCCATGAAACGGGCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAAAGC-CTAAGCT-GAGAA
* * * *
27671358 TC-ATCTCGGTCCCTCTTACGTGTTG-TCGATCCTACTGTCACAACCC-TCGTTTCAGTCCGA
830 TCGA-CTCGGTCCCCCCTACGTGCTGCT-GATCCTACTGTCACAACCCTTCG-TCCAGTCCGA
* * *
27671418 TCTTAGACTAGGAATGAACTCGGTATGCTTAGACTGGGGATAAAATCCGTATGCCTAAGTCAACC
1 TCTTAGACTGGGAATGAACTC-GTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
27671483 CACGAAA
65 CACGAAA
27671490 TGAGTGTGTA
Statistics
Matches: 803, Mismatches: 129, Indels: 60
0.81 0.13 0.06
Matches are distributed among these distances:
879 137 0.17
880 235 0.29
881 40 0.05
882 6 0.01
883 44 0.05
884 1 0.00
885 10 0.01
886 18 0.02
887 54 0.07
888 20 0.02
892 1 0.00
895 2 0.00
896 5 0.01
897 1 0.00
899 8 0.01
900 193 0.24
901 28 0.03
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.23
Consensus pattern (889 bp):
TCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCAGGAGCTCAGACAGCCAGAGAGGCAGATGCGTAAGCCGAGGATCAGCTCG
ATCCGCCCTACGTGCTGATGATCCTACTACTGCAACCCTCAGTCTGGTCAGATCTTAGACTGGGA
ATGAACTCCGTATGCTTAGACCGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
TACGAGACTAGCCAGCCAAGACTAGAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGATCCCCC
CTACATGCTGTCGATCTGCTGCTGGTCCTGCCTATCTAACCCTACGTCTAGGTCTGATCTTAGAC
TGCAGAATGAACTCCGTAATTCCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGA
AAACGACTGTTGAGGGCCCTCAATCAACCGAAGAGGCAGAATCCGCAAGCCAGGGATCGACCCGA
TCCCTCCCTGCCTGCTGTCAATCCTGCTACCGCAACCCTCAGTCGAGTCCAATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGAGCACTGAGCCGACCGGAGAGG
CATAATGCACAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTGCCGGTCCCGCTGCCACAAC
CATCGGTCGAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGG
GCGTGCGGGCGCTCAACCGATCGGAGAGGCAGAAAGCCTAAGCTGAGAATCGACTCGGTCCCCCC
TACGTGCTGCTGATCCTACTGTCACAACCCTTCGTCCAGTCCGA
Found at i:27671876 original size:26 final size:26
Alignment explanation
Indices: 27671838--27671890 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27671828 GGCTCAAACT
27671838 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27671864 CTTAGACAT-GGAATGCACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27671890 C
1 C
27671891 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27672408 original size:26 final size:25
Alignment explanation
Indices: 27672369--27672418 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
27672359 TTGGTCCGAT
*
27672369 CTTAGACTGGAATGAACTTCGTATA
1 CTTAGACTGGAATGAACTCCGTATA
27672394 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGAC-TGGAATGAACTCCGTAT
27672419 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATA
Found at i:27673128 original size:26 final size:26
Alignment explanation
Indices: 27673090--27673142 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27673080 CTGGTCTGAT
*
27673090 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27673116 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
27673142 C
1 C
27673143 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27677921 original size:159 final size:156
Alignment explanation
Indices: 27677625--27678130 Score: 384
Period size: 159 Copynumber: 3.2 Consensus size: 156
27677615 ACTCCATATG
* * * *** **
27677625 CTTAGACAT-GGAGTGAACTTCGTATGCCTCAGCCAACCCATGAAAC-AAGCGTGCAAACGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATG-CTTAGCCAACCCATGAAACGAA-CGTGCGGGCATTCA
* * ** * ** * *
27677688 ACCGACCAAAGAGGCAGAATGCGTAAGCCGGGGA-CCGACTTGGTCCCCTCTTGCGTGCTGTCAA
63 ACCGATCGAAGAGGCAGAATGCACAAGCCGAGGATCCG-CCCGGT-CCC-CGTGCGTGCTGTCGA
27677752 TCCTACTGCCACAACCCTCGGTCCGATGTGAT
125 TCCTACTGCCACAACCCTCGGTCCGATGTGAT
* ** ** * * * *
27677784 CTTAGACTGGGAATGAACTCTGTATGCCTTAGTTAACCCATGAAACGAGTGTTCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATG-CTTAGCCAACCCATGAAACGAACGTGCGGGCATTCAAC
*
27677849 CGATCGAAGAGGCATAATG-AGCAAGCCGAGGAT-CGACCCGGTCCTGCTC-TGCGTGCTGTCGA
65 CGATCGAAGAGGCAGAATGCA-CAAGCCGAGGATCCG-CCCGGTCC--C-CGTGCGTGCTGTCGA
** * * * *
27677911 TGTTGCTGCCACAACCTTCGGTCTGACTAG-G-G
125 TCCTACTGCCACAACCCTCGGTCCGA-T-GTGAT
* * *
27677943 CTTAGACAT-GGAATGAACTCCCTATGACTAAGCCAACCCATGAAATGAACGTGCGGGCATTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATG-CTTAGCCAACCCATGAAACGAACGTGCGGGCATTCAA
* * * *
27678007 CCGATTGGAGAGGCAGAATGCACAAGCCGAGGATCCGCCCGGTCCCCGTACGTGCTG-CTGACCC
64 CCGATCGAAGAGGCAGAATGCACAAGCCGAGGATCCGCCCGGTCCCCGTGCGTGCTGTC-GATCC
* * ** *
27678071 TACGGTCGTAACCCTCGGTCCGATCTGAT
128 TACTGCCACAACCCTCGGTCCGATGTGAT
27678100 CTTAGACTGGGAATGAACTCCGTATGCTTAG
1 CTTAGACTGGGAATGAACTCCGTATGCTTAG
27678131 ACTGGGGATA
Statistics
Matches: 270, Mismatches: 61, Indels: 35
0.74 0.17 0.10
Matches are distributed among these distances:
156 9 0.03
157 50 0.19
158 3 0.01
159 197 0.73
160 10 0.04
161 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGCCAACCCATGAAACGAACGTGCGGGCATTCAACC
GATCGAAGAGGCAGAATGCACAAGCCGAGGATCCGCCCGGTCCCCGTGCGTGCTGTCGATCCTAC
TGCCACAACCCTCGGTCCGATGTGAT
Found at i:27678129 original size:26 final size:26
Alignment explanation
Indices: 27678100--27678150 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
27678090 CCGATCTGAT
*
27678100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
27678126 CTTAGACTGGGGATAAACTTCGTAT
1 CTTAGACTGGGAATAAACTCCGTAT
27678151 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:27678510 original size:26 final size:26
Alignment explanation
Indices: 27678480--27678532 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27678470 CCGGTATGAT
27678480 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
27678506 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
27678532 C
1 C
27678533 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:27678747 original size:881 final size:871
Alignment explanation
Indices: 27677064--27678764 Score: 1794
Period size: 881 Copynumber: 1.9 Consensus size: 871
27677054 CGCCTCGTCC
* * **
27677064 GACTAGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGTGTGCGGA
1 GACTAGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGAAACAGACGTGCGGA
* ** *** * * * *
27677129 CGCTCAGTCAGTTGAAGAGGCAGAATGTGTAAGCCGGGGATCGGCCCGATCCCACCTGCTTGCTG
66 CACTCAACCAGTTGAAGAGGCAGAATGCACAAGCCGAGGATCCGCCCGATCCCACCTACGTGCTG
* *
27677194 TCAATCCTGCGGTCGCAACCCTCAGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTT
131 TCAACCCTACGGTCGCAACCCTCAGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTT
* * * * * *
27677259 AGACTGGGGATGAACTCCATTTGCCTAAGTCAACCCATGAAACGAGCATGTGGGCACTCAGTCGA
196 AGACTGGGGATAAACTCCATATACCTAAGTCAACCCATGAAACAAGCATGCGGACACTCAGTCGA
*** * * * * * * * * * *
27677324 TTGGATAGGCCGATCGGAGAGGCATAATGCGTAAGTCGGGGATTAGCCTGGTCCCCCTCTGCGTG
261 CCAGAGAGGCAGATCGAAGAGGCATAATGCATAAGCCGAGGATCAGCCCGATCCCCCTCTACGTG
* *
27677389 CTACCGATCCTGCTACCACAACCCTCGGTCTGGCTGAGGCTTAGACATGGAATGAACTCCGTATG
326 CTACCGATCCTGCTACCACAACCCTCGGTCCGACTGAGGCTTAGACATGGAATGAACTCCGTATG
** * * * *
27677454 CCTAAGCCAACTGACGAAACAAGCGTGCGGGCACTCAGCCGGTCGGAGACGTAGAATGCGCAAGC
391 CCTAAGCCAACCCACAAAACAAGCGTCCGGGCACACAGCCGGTCGGAGACGTAAAATGCGCAAGC
* * * * * **
27677519 TGGGGGTCGGCTCGATCCCCCCTACGTGCTATTGATCTTGCTGTTGGTCCTGCTGTCGCAAACCT
456 TGGCGATCGGCTCGATCCCCCCTACCTGCTATTGATCTTGCTGCTGGTCCTACTACCGCAAACCT
* * * *
27677584 CGGTCCTGATTTGATCTTAGACTGAGAATGAACTCCATATGCTTAGACATGGAGTGAACTTCGTA
521 CGATCCTGATATGATCTTAGACTGAGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTA
* * * * *
27677649 TGCCTCAGCCAACCCATGAAACAAGCGTGCAAACGCTCAACCGACCAAAGAGGCAGAATGCGTAA
586 TGCCTAAGCCAACCCACGAAACAAGAGTACAAACGCTCAACCGACCAAAGAGGCAGAATGCGCAA
* ** * * * *
27677714 GCCGGGGACCGACTTGGTCCCCTCTTGCGTGCTGTCAATCCTACTGCCACAACCCTCGGTCCGAT
651 GCCGAGGACCGACCCGATCCCCCCTTGCGTGCTGTCAATCCTACTACCACAACCCTCGATCCGAT
* * * * * * *
27677779 GTGATCTTAGACTGGGAATGAACTCTGTATGCCTTAGTTAACCCATGAAACGAGTGTTCGGGCGT
716 GTGATCTTAGACTGGGAATGAACTCTGCATGCCTAAGTCAACCCACGAAACAAGCGTTCAGGCGT
* *
27677844 TGAGCCGATCGAAGAGGCATAATG-AGCAAGCC-GAGGATCGACCCGGTCCTGCTCTGCGTGCTG
781 TGAGCCGACCGAAGACGCATAATGCA-CAAGCCAG-GGATCGACCCGGTCCTGCTCTGCGTGCTG
27677907 TCGATGTTGCTGCCACAACCTTCGGTCT
844 TCGATGTTGCTGCCACAACCTTCGGTCT
* *
27677935 GACTAGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCATGAAA-TGAACGTGCGG
1 GACTAGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGAAACAG-ACGTGCGG
* * * * *
27677999 GCATTCAACC-GATTGGAGAGGCAGAATGCACAAGCCGAGGATCCGCCCGGTCCC-CGTACGTGC
65 ACACTCAACCAG-TTGAAGAGGCAGAATGCACAAGCCGAGGATCCGCCCGATCCCACCTACGTGC
* * * * *
27678062 TG-CTGACCCTACGGTCGTAACCCTCGGTCC-GATCTGATCTTAGACTGGGAATGAACTCCGTAT
129 TGTC-AACCCTACGGTCGCAACCCTCAGTCCAG-TCCGATCTTAGACTAGGAATGAACTCCGTAT
* * * *
27678125 GCTTAGACTGGGGATAAACTTCGTATACCTAAGTCAACCCATGAAACAAGCGTGCGGACGCTCAG
192 GCTTAGACTGGGGATAAACTCCATATACCTAAGTCAACCCATGAAACAAGCATGCGGACACTCAG
* *
27678190 TCGGCCAGAGAGGCTAGCT-GAAGAGGCATAATGCATAAGCCGAGGATCAGCCCGATCCCCCTCT
257 TCGACCAGAGAGGC-AGATCGAAGAGGCATAATGCATAAGCCGAGGATCAGCCCGATCCCCCTCT
* * * *
27678254 ACGTGCTGATGATCCCGCTACCTGTCCTACTGCCATAACCCTTGGTCCGACTGGGGCTTAGACAT
321 ACGTGC---T-A--CCGAT-CCTG--CTA---CCACAACCCTCGGTCCGACTGAGGCTTAGACAT
** * * *
27678319 GGAATGAACTCCGTATGCCTAAGGTAACCCACAAAACGAGCGTCCGGGCA-AGAGGCTGGTCGGA
374 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACAAGCGTCCGGGCACACA-GCCGGTCGGA
* * * * * * * * *
27678383 GAGGTAAAATGTGCAAGCTTGCGATC-GATCTGGTCCCCTCTGCCTGCTGTTGATCTTGTTGCTG
438 GACGTAAAATGCGCAAGCTGGCGATCGGCTC-GATCCCCCCTACCTGCTATTGATCTTGCTGCTG
* * * *
27678447 GTCCTACTACCGTAACCCTCGATCC-GGTATGATCTTAGACT-AGGAATGAACTCCGTATGCTTA
502 GTCCTACTACCGCAAACCTCGATCCTGATATGATCTTAGACTGA-GAATGAACTCCATATGCTTA
* *** **
27678510 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTACGGGCGCTCAGTCGAC
566 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGAGTACAAACGCTCAACCGAC
** * * * * * * * * *
27678575 CGGATAGGCATAATGTGCAGGCTGATGACCGACCCGATCCCCCCTTGTGTGCTGTCAATCTTGCT
631 CAAAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCCTTGCGTGCTGTCAATCCTACT
*** * * *
27678640 ACTGGAACCCTCGATTC-A-GTCCGATCTTAGATTGGGAATGAA-TTTCGCATGCCTAAGTCAAC
696 ACCACAACCCTCGATCCGATGT--GATCTTAGACTGGGAATGAACTCT-GCATGCCTAAGTCAAC
** * *
27678702 CCACGAAACAAGCGTTCAGGCGTTGAGTTGGCCGGAGACGCATAATGCACAAGCCAGGGATCG
758 CCACGAAACAAGCGTTCAGGCGTTGAGCCGACCGAAGACGCATAATGCACAAGCCAGGGATCG
27678765 GTCCGATCCC
Statistics
Matches: 663, Mismatches: 142, Indels: 40
0.78 0.17 0.05
Matches are distributed among these distances:
869 2 0.00
870 167 0.25
871 98 0.15
873 1 0.00
874 1 0.00
876 4 0.01
877 4 0.01
879 5 0.01
880 4 0.01
881 230 0.35
882 147 0.22
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.22
Consensus pattern (871 bp):
GACTAGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGAAACAGACGTGCGGA
CACTCAACCAGTTGAAGAGGCAGAATGCACAAGCCGAGGATCCGCCCGATCCCACCTACGTGCTG
TCAACCCTACGGTCGCAACCCTCAGTCCAGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTT
AGACTGGGGATAAACTCCATATACCTAAGTCAACCCATGAAACAAGCATGCGGACACTCAGTCGA
CCAGAGAGGCAGATCGAAGAGGCATAATGCATAAGCCGAGGATCAGCCCGATCCCCCTCTACGTG
CTACCGATCCTGCTACCACAACCCTCGGTCCGACTGAGGCTTAGACATGGAATGAACTCCGTATG
CCTAAGCCAACCCACAAAACAAGCGTCCGGGCACACAGCCGGTCGGAGACGTAAAATGCGCAAGC
TGGCGATCGGCTCGATCCCCCCTACCTGCTATTGATCTTGCTGCTGGTCCTACTACCGCAAACCT
CGATCCTGATATGATCTTAGACTGAGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTA
TGCCTAAGCCAACCCACGAAACAAGAGTACAAACGCTCAACCGACCAAAGAGGCAGAATGCGCAA
GCCGAGGACCGACCCGATCCCCCCTTGCGTGCTGTCAATCCTACTACCACAACCCTCGATCCGAT
GTGATCTTAGACTGGGAATGAACTCTGCATGCCTAAGTCAACCCACGAAACAAGCGTTCAGGCGT
TGAGCCGACCGAAGACGCATAATGCACAAGCCAGGGATCGACCCGGTCCTGCTCTGCGTGCTGTC
GATGTTGCTGCCACAACCTTCGGTCT
Found at i:27678932 original size:13 final size:13
Alignment explanation
Indices: 27678914--27678953 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
27678904 GGGAGCTCAA
*
27678914 CCGGTCGGAGAGG
1 CCGGTCGAAGAGG
27678927 CCGGTCGAAGAGG
1 CCGGTCGAAGAGG
*
27678940 CCAGTCGAAGAGG
1 CCGGTCGAAGAGG
27678953 C
1 C
27678954 ATAATGCGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.23, C:0.25, G:0.45, T:0.07
Consensus pattern (13 bp):
CCGGTCGAAGAGG
Found at i:27679255 original size:26 final size:26
Alignment explanation
Indices: 27679217--27679269 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27679207 CCGATCCAGT
*
27679217 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
27679243 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGA-ATGGGAATGAACTCCGTATG
27679269 C
1 C
27679270 CTAAGCCTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:27679721 original size:26 final size:27
Alignment explanation
Indices: 27679692--27679745 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
27679682 CCAATCCGAT
*
27679692 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACTTAGGAATGAACTCCATATG
*
27679718 CTTAGACTTAGGAATGAACTCCGTATG
1 CTTAGACTTAGGAATGAACTCCATATG
27679745 C
1 C
27679746 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (27 bp):
CTTAGACTTAGGAATGAACTCCATATG
Found at i:27680959 original size:26 final size:26
Alignment explanation
Indices: 27680893--27680960 Score: 109
Period size: 26 Copynumber: 2.6 Consensus size: 26
27680883 TTAGACTGGA
* *
27680893 AATGAACTTCGTACGCTTCGATATGG
1 AATGAACTCCGTATGCTTCGATATGG
*
27680919 AATGAACTCCATATGCTTCGATATGG
1 AATGAACTCCGTATGCTTCGATATGG
27680945 AATGAACTCCGTATGC
1 AATGAACTCCGTATGC
27680961 CTAAGCCAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
AATGAACTCCGTATGCTTCGATATGG
Found at i:27681101 original size:215 final size:211
Alignment explanation
Indices: 27680730--27681120 Score: 523
Period size: 215 Copynumber: 1.8 Consensus size: 211
27680720 GGGCTTAGAC
* *
27680730 ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGCGTACTGGCGCTCAGCCGATCGG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACTGGCGCTCAGCCGATCGG
* ** * * *
27680795 AGAGGTAGAATGTGCAAGCCAGGGATCGGTCCGGTCCCCCCATACGTACTGTCGATCCTGATGTC
66 AGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCATACGTACTGTCGATCCTGATATC
* *
27680860 GCAACCCTCGATCCGGTCCAATCTTAGACTGGAAATGAACTTCGTACGCTTCGATATGGAATGAA
131 GCAACCCTCGATCCGATCCAATCTTAGACTGGAAATAAACTTCGTACGCTTCGATATGGAATGAA
27680925 CTCCATATGCTTCGAT
196 CTCCATATGCTTCGAT
* * * *
27680941 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGTCTGGGCGTTCAGTCGG
1 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC--GT-ACT-GGCGCTCAGCCGA
* * * *
27681006 TCGGAGAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCTCC-TACGTGCTGTTGATCCTG
62 TCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCC-CCATACGTACTGTCGATCCTG
* * ** *
27681070 CTATCGCAACCCTCGATCTGATCTGATCTTAGACTGGTAATAAACTTCGTA
126 ATATCGCAACCCTCGATCCGATCCAATCTTAGACTGGAAATAAACTTCGTA
27681121 TGCCTAAGTC
Statistics
Matches: 152, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
211 41 0.27
213 2 0.01
214 2 0.01
215 105 0.69
216 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (211 bp):
ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACTGGCGCTCAGCCGATCGG
AGAGGCAGAATGCACAAGCCAGGGATCGGCCCGATCCCCCCATACGTACTGTCGATCCTGATATC
GCAACCCTCGATCCGATCCAATCTTAGACTGGAAATAAACTTCGTACGCTTCGATATGGAATGAA
CTCCATATGCTTCGAT
Found at i:27681442 original size:26 final size:26
Alignment explanation
Indices: 27681413--27681491 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
27681403 CTGGTCTGAT
* *
27681413 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
27681439 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCGTATG
27681465 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
27681491 C
1 C
27681492 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:27683607 original size:26 final size:26
Alignment explanation
Indices: 27683567--27683617 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
27683557 TGATTCGATC
*
27683567 TTAGACTAGGAATGAACTCCGTATGG
1 TTAGACTAGGAATGAACTACGTATGG
* *
27683593 TTAGACTGGGGATGAACTACGTATG
1 TTAGACTAGGAATGAACTACGTATG
27683618 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTACGTATGG
Found at i:27684627 original size:158 final size:158
Alignment explanation
Indices: 27684328--27684614 Score: 380
Period size: 158 Copynumber: 1.8 Consensus size: 158
27684318 ACTCTATCTA
* * *
27684328 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCACTGAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGGCACTCAGC
* * * *** * * *
27684393 CAGCCGGATAGGCATAATGGTAAGCCGGGGATCGGCCTGATCCCCCTCTGCGTGCTGTCGATCCC
66 CAGCCGGAGAGGCAGAATGGCAAGCCAACGATCGGCCTGATCCCCCTCTACATGCTATCGATCCC
27684458 ACTACCACAACCCTTAGTTTCGCTGGGG
131 ACTACCACAACCCTTAGTTTCGCTGGGG
* *
27684486 CTTAGACATGGAATGAACTCCCTGTGCCTAAGCCAACCCATGAAACGGGCATACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGGCACTCAGC
* * * *
27684551 CAGTCGGAGAGGTAGAATGCGCAAGCCAACGATCGG-TTCGATCCCTC-CTACATGCTATCGATC
66 CAGCCGGAGAGGCAGAATG-GCAAGCCAACGATCGGCCT-GATCCCCCTCTACATGCTATCGATC
27684614 C
129 C
27684615 TGTTGCCGCA
Statistics
Matches: 109, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
158 90 0.83
159 19 0.17
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATACGGGCACTCAGC
CAGCCGGAGAGGCAGAATGGCAAGCCAACGATCGGCCTGATCCCCCTCTACATGCTATCGATCCC
ACTACCACAACCCTTAGTTTCGCTGGGG
Found at i:27686405 original size:196 final size:196
Alignment explanation
Indices: 27686067--27686425 Score: 497
Period size: 196 Copynumber: 1.8 Consensus size: 196
27686057 TGGTTCAATT
* *
27686067 TGATCTTAGACTGGGAATGAACTCCATATCCTTAGACTAGGTATGAACTCCGTATGCCTAAGTCA
1 TGATCTTAGACTGGGAATGAACTCCATATCCTTAGACTAGGAATGAACTCCGTATACCTAAGTCA
* * * * * *
27686132 ACCCACGAAACACGCGTGCGGGCGCTCAGCCGGCTGGAGAGGCAAAATACGCAAGCTGGGGATCG
66 ACCCACGAAACACGCGTGCGGGCGCTCAACCGGATGAAGAGGCAAAATACGCAAGCTAGCGATCA
* * *
27686197 ACTCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCTGGTCCTACTGCCGCCAACCTCAGTCCAGT
131 ACCCGATCCCCCCTACGTGCTGTCAATCCTGCTGCTGGTCCTACTGCCGCCAACCTCAGTCCAGT
27686262 C
196 C
* * ** *
27686263 TGATCTTAGTCTGGGAATGAACTCCATATGCTTAGAC-ATGGAATGAACTCCGTATATGTAAGTG
1 TGATCTTAGACTGGGAATGAACTCCATATCCTTAGACTA-GGAATGAACTCCGTATACCTAAGTC
* * * *
27686327 AACCCATGAAACGA-GTGTGCGGGTGCTCAACCGGATGAAGAGGCAAAATGCGCAAGCTAGCGAT
65 AACCCACGAAAC-ACGCGTGCGGGCGCTCAACCGGATGAAGAGGCAAAATACGCAAGCTAGCGAT
*
27686391 CAACCCGATCCCCCCTACGTGCTGTCAATCTTGCT
129 CAACCCGATCCCCCCTACGTGCTGTCAATCCTGCT
27686426 ACCGCAACCC
Statistics
Matches: 140, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
195 1 0.01
196 138 0.99
197 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (196 bp):
TGATCTTAGACTGGGAATGAACTCCATATCCTTAGACTAGGAATGAACTCCGTATACCTAAGTCA
ACCCACGAAACACGCGTGCGGGCGCTCAACCGGATGAAGAGGCAAAATACGCAAGCTAGCGATCA
ACCCGATCCCCCCTACGTGCTGTCAATCCTGCTGCTGGTCCTACTGCCGCCAACCTCAGTCCAGT
C
Found at i:27686793 original size:158 final size:157
Alignment explanation
Indices: 27686363--27686793 Score: 374
Period size: 158 Copynumber: 2.7 Consensus size: 157
27686353 TCAACCGGAT
* * * * * * * *
27686363 GAAGAGGCAAAATGCGCAAGCTAGCGATCAACCCGATCCCCCCTACGTGCTGTCAATCTTGCTAC
1 GAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGC
* * *
27686428 CGCAACCCTCGGTCTGGTCCGATCTTAGGCTGGGAATGAAC-TCTGTATGCCTAAGTCAAACCAC
66 CGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAAACCAC
* *
27686492 GAAACCAGCGCTCGGGCGCTGAGCTGACC
130 GAAA-CAGCGCTCGGGCGCTCAGCCGACC
* * * * * * * * *
27686521 GAAGAGGCATATTACGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGGCGGTCCTGCTG
1 GAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGGTCCCCC-CTGCGTGCTGTCGATCCTGCTG
* * * * * * *
27686586 CCACAACCCT-TAGT-T--TCCTTAGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAAC
65 CCGCAACCCTCGA-TCTGGTCC-GA-TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAAA
* * **
27686646 CCACGAAA-TGGGCATACGGGCTTTCAGCCGACC
126 CCACGAAACAGCGC-T-CGGGCGCTCAGCCGACC
* * * * *
27686679 -AGAGAGGCAGAATGCGCAAGCCAGGGATCGATCTGGTCCCCCCTGCATGCTGTCGATCCTACTG
1 GA-AGAGGCAAAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTG
27686743 CCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGC
65 CCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGC
27686794 TTAGACTGGG
Statistics
Matches: 208, Mismatches: 51, Indels: 28
0.72 0.18 0.10
Matches are distributed among these distances:
156 6 0.03
157 32 0.15
158 138 0.66
159 29 0.14
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (157 bp):
GAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCTGCTGC
CGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAAACCACG
AAACAGCGCTCGGGCGCTCAGCCGACC
Found at i:27686803 original size:26 final size:26
Alignment explanation
Indices: 27686767--27686819 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27686757 CTGGTCCGAT
*
27686767 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
27686793 CTTAGACTGGGGATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27686819 C
1 C
27686820 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27687143 original size:26 final size:26
Alignment explanation
Indices: 27687114--27687164 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
27687104 CGATTCGATC
27687114 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
* *
27687140 TTAGACTGGGGATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCCGTATG
27687165 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:27687886 original size:26 final size:26
Alignment explanation
Indices: 27687848--27687898 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27687838 TTGGTTCAAT
*
27687848 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCAGTATA
27687874 CTTAGACAT-GGAATGAACTCAGTAT
1 CTTAGAC-TGGGAATGAACTCAGTAT
27687899 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATA
Found at i:27688035 original size:26 final size:26
Alignment explanation
Indices: 27687997--27688047 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27687987 TTGGTTCGAT
27687997 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
27688023 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
27688048 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:27688184 original size:26 final size:26
Alignment explanation
Indices: 27688146--27688196 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27688136 TTGGTTCGAT
27688146 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
27688172 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
27688197 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:27688270 original size:149 final size:148
Alignment explanation
Indices: 27687829--27688270 Score: 749
Period size: 149 Copynumber: 3.0 Consensus size: 148
27687819 TGCTGTCGCA
*
27687829 ACGCTCGGTTTGGTTCAATCTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTC
1 ACGCTCGGTTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTC
* * *
27687894 AGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTGAGTCGGCCGAAAAGGAATAATGC
66 CGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTGAGCCGGCCGAAAAGGAATAATGC
* *
27687959 GCAAGTCGGAGATCGAGCG
131 GTAAGCCGG-GATCGAGCG
27687978 ACGCTCGGTTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTC
1 ACGCTCGGTTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTC
* * * *
27688043 CGTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGCACTGAGCCGACCGGAGAGGAATAATGC
66 CGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTGAGCCGGCCGAAAAGGAATAATGC
27688108 GTAAGCCGGGGATCGAGCG
131 GTAAGCC-GGGATCGAGCG
27688127 ACGCTCGGTTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTC
1 ACGCTCGGTTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTC
* *
27688192 CGTATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCACTGAGCCGGCCGAAAAGGAATAATGC
66 CGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTGAGCCGGCCGAAAAGGAATAATGC
27688257 GTAAGCCGAGGATC
131 GTAAGCCG-GGATC
27688271 AGCTCGATCC
Statistics
Matches: 275, Mismatches: 16, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
148 1 0.00
149 272 0.99
150 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.20
Consensus pattern (148 bp):
ACGCTCGGTTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATACTTAGACATGGAATGAACTC
CGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTGAGCCGGCCGAAAAGGAATAATGC
GTAAGCCGGGATCGAGCG
Found at i:27690490 original size:26 final size:26
Alignment explanation
Indices: 27690454--27690506 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27690444 TTTGGAATAG
27690454 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
27690480 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
27690506 G
1 G
27690507 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:27690699 original size:26 final size:26
Alignment explanation
Indices: 27690663--27690714 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27690653 GTTGCCTTAG
27690663 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
27690689 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27690715 AATCTAACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27691362 original size:158 final size:159
Alignment explanation
Indices: 27691159--27691692 Score: 562
Period size: 158 Copynumber: 3.4 Consensus size: 159
27691149 TGAGCGCCCG
* *
27691159 GCACTGCTCGTTTCATGGGTTTGGGCTTAGGCATAGGGAGTTCATTCCATGTC-GAGCACCAGCC
1 GCAC-GCTCGTTTCATGGG-TT-GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCC
* * *
27691223 AGAACCGAGGGTTGTGGTAGTGGGATCGACAGCACGCAAAGGGGGACTGGGCGATCCCCGACTTA
63 AGAACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAAAGGGGGACCGGGCGATCCCCGACTTG
* *
27691288 CGCATTATGCCTCTTCGGCCGGTTCAGCACCC
128 CGCATTATGCCTCTTCGACCGGCTCAGCACCC
* * *
27691320 GCACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCAG
1 GCACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAG
* * * * * * * *
27691384 -ACCTAGGGTTGTGGTAGCAGAACCGGCAGCATGCAGAGGGGGACCGGGCTGATCCCCGGCTTGC
65 AACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAAAGGGGGACCGGGC-GATCCCCGACTTGC
* * *
27691448 GCATTATGCCTCTTCGACCGACTCAACGCCC
129 GCATTATGCCTCTTCGACCGGCTCAGCACCC
* * * * * *
27691479 GCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGATCA
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCA
* * * * * *
27691542 -AACTGAGGGTTGTAGTAGTAGGATC-AGCAGCACAC-AGGGGGGGCCGGGTCGATCCCCGTCTT
64 GAACCGAGGGTTGTGGTAGTAGGATCGA-CAGCACGCAAAGGGGGACCGGG-CGATCCCCGACTT
* * * * *
27691604 GCGCATTCTGCCTCTCCGATCGGCTGAGCTCCC
127 GCGCATTATGCCTCTTCGACCGGCTCAGCACCC
* * *
27691637 GCAGGCTCATTTCATGGGTTGGCTTTGGCATACGGAGTTCATTCCATGTCTAAGCA
1 GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
27691693 TACGGAGTTC
Statistics
Matches: 308, Mismatches: 54, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
157 3 0.01
158 163 0.53
159 122 0.40
160 16 0.05
161 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCAGA
ACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAAAGGGGGACCGGGCGATCCCCGACTTGCGC
ATTATGCCTCTTCGACCGGCTCAGCACCC
Found at i:27692427 original size:26 final size:26
Alignment explanation
Indices: 27692398--27692450 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27692388 GTAGACTTAG
27692398 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27692424 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27692450 G
1 G
27692451 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27692929 original size:26 final size:26
Alignment explanation
Indices: 27692898--27692949 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27692888 GTTGGCTTAG
27692898 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27692924 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27692950 TATTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27693653 original size:26 final size:26
Alignment explanation
Indices: 27693617--27693666 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
27693607 GTTGACTTAG
27693617 GCATACGGAGTTAATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* *
27693643 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTAATCCCCAGTCT
27693667 CAGATCAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:27694909 original size:158 final size:158
Alignment explanation
Indices: 27694551--27695069 Score: 393
Period size: 158 Copynumber: 3.2 Consensus size: 158
27694541 CGCACGCCCG
*
27694551 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTG
1 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTG
* * *
27694616 TGATAGCAGGACCAAAGCACACAGAGGGGGACCGGGCCGATCCCTGGCTTGCACATTATGCCTCT
66 TGACAGCAGGACCAAAGCACACAGAGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCT
* *
27694681 TCGGTCGGCTCAGCGCCCACACGCTCAT
131 CCGCTCGGCTCAGCGCCCACACGCTCAT
* * * * ** * *
27694709 TTCGTGGGTTGACTTATGCATACGGAGTTTATTCCCA-CTCTAAG-ATCTGATCGGACCG-GGCG
1 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGG-G
* * * ** * * *
27694771 TTGTGGCAGCAGGATCGACAGCACGTAG-GGGGGATCGGGCCTATCCCCGACTTGCACATTCTGC
63 TTGTGACAGCAGGA-CCAAAGCACACAGAGGGGGACCGGGCCGATCCCCGACTTGCACATTATGC
* * * **
27694835 CTCTCCGACT-GGTTGAGTGCCCGTACGCTCAT
127 CTCTCCG-CTCGGCTCAGCGCCCACACGCTCAT
** * ** * *
27694867 TTCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCCCGAGCTAGACTGAGGATTA
1 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGG-GT-
* *** * * * *
27694932 TGGTAGCAAGACCGGCAGTGGGATCGGTAGCACACAGAGGGGGACCAGGCTGATTCCTGACTTGC
64 T-GT-----GA-CAGCA---GGA-CCAAAGCACACAGAGGGGGACCGGGCCGATCCCCGACTTGC
* *
27694997 GCATTATGCCTCTCCGAC-CGGCTAAGCGCCCACACGCTCAT
118 ACATTATGCCTCTCCG-CTCGGCTCAGCGCCCACACGCTCAT
** * *
27695038 TTTATGGGTTGACTTAGGCATACGAAGTTCAT
1 TTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
27695070 CCCTAATCTA
Statistics
Matches: 274, Mismatches: 66, Indels: 29
0.74 0.18 0.08
Matches are distributed among these distances:
157 7 0.03
158 147 0.54
159 17 0.06
160 1 0.00
161 2 0.01
166 1 0.00
167 4 0.01
170 13 0.05
171 82 0.30
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTG
TGACAGCAGGACCAAAGCACACAGAGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCT
CCGCTCGGCTCAGCGCCCACACGCTCAT
Found at i:27695092 original size:26 final size:26
Alignment explanation
Indices: 27695055--27695107 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27695045 GTTGACTTAG
27695055 GCATACGAAGTTCATCCCTAATCTAA
1 GCATACGAAGTTCATCCCTAATCTAA
* * *
27695081 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAATCTAA
27695107 G
1 G
27695108 ATAAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAATCTAA
Found at i:27695536 original size:11 final size:11
Alignment explanation
Indices: 27695520--27695551 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
27695510 CCGGGGCACT
27695520 ATCGTCGGAGC
1 ATCGTCGGAGC
27695531 ATCGTCGGAGC
1 ATCGTCGGAGC
27695542 ATCGTCGGAG
1 ATCGTCGGAG
27695552 AGCCTAACCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.19, C:0.25, G:0.38, T:0.19
Consensus pattern (11 bp):
ATCGTCGGAGC
Found at i:27695650 original size:12 final size:12
Alignment explanation
Indices: 27695633--27695662 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
27695623 TTCTGGTACC
27695633 TGGCCCTTATAT
1 TGGCCCTTATAT
27695645 TGGCCCTTATAT
1 TGGCCCTTATAT
27695657 TGGCCC
1 TGGCCC
27695663 CCTATCCCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.30, G:0.20, T:0.37
Consensus pattern (12 bp):
TGGCCCTTATAT
Found at i:27696856 original size:26 final size:26
Alignment explanation
Indices: 27696820--27696872 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27696810 GTTCACTTAG
*
27696820 GCATACAGAGTTCATCCCCAATCTAA
1 GCATAAAGAGTTCATCCCCAATCTAA
* *
27696846 GCATAAAGAGTTCATTCCCAGTCTAA
1 GCATAAAGAGTTCATCCCCAATCTAA
27696872 G
1 G
27696873 ATCTGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATAAAGAGTTCATCCCCAATCTAA
Found at i:27697154 original size:159 final size:159
Alignment explanation
Indices: 27696906--27697667 Score: 604
Period size: 159 Copynumber: 4.8 Consensus size: 159
27696896 GTAGCAGTAT
* * * * *
27696906 CGACAGCACGTAGGGGGGACTGGGTCGATCCCCGACTTGCACATTCTGCCTC-TCTGGTCAGCTG
1 CGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTC-GATCGGCTG
* * * * * * *
27696970 AGTAACCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCC
65 AGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCC
* * *
27697035 AGCCAGACCGAGGGTTGTGGTAG-TGGTAC
130 AGCTAGACCGAGGGTTGCGGCAGCTGGTAC
* * * * * * *
27697064 CGACAGCACGGAGAGGGGGACCAGGCCGATCCCCGACTTGCACATTATGCCTCTTCGACCGGCTC
1 CGACAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTCGATCGGCTG
* ** * * * ***
27697129 AGCACCCGCACACTCGTTTCATGGGTTGAATTATGCATACAGAGTTCATTCCTAGTCTAAG-ATT
65 AGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCC
* * * * * * *
27697193 GGACTGGACTGAGGGTTACGGTAGCAGG-AT
130 AG-CTAGACCGAGGGTTGCGGCAGCTGGTAC
* *
27697223 CGATAGCACGCAGGAGGGGACCGGGTTGATCCCCGGCTTGCACATTCTGCCTCTTCGATCGGCTG
1 CGACAGCACGCAGG-GGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTCGATCGGCTG
* * * * * * * * *
27697288 AGCGCCCGTACTCTCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCC
65 AGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCC
* * *
27697353 AGCTGGACCGAGGGTTGTGGCAG-TGGGAC
130 AGCTAGACCGAGGGTTGCGGCAGCTGGTAC
* * * * * ** * * * *
27697382 CGGCAACATGCAGAGGGGGACTGGGCCGATCGTCGGCTTGCGCATTATGCCTCTCCGATCGGCTC
1 CGACAGCACGCAG-GGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTCGATCGGCTG
** * * * * * ***
27697447 AGTTCCTGCACGCTCATTTCATGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-TATC
65 AGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCC
* * * **
27697511 TGATCGAACCGAGGGTTGCAACAGCTGGGT--
130 AGCTAG-ACCGAGGGTTGCGGCAGCT-GGTAC
* * * ** * *
27697541 TGACAGCACGTAGGGGGGGACCTGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATTGGCTG
1 CGACAGCACGCA-GGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTCGATCGGCTG
* * *
27697606 AGCACCCACACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
65 AGCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGC
27697668 ATAAGGAGTT
Statistics
Matches: 464, Mismatches: 127, Indels: 24
0.75 0.21 0.04
Matches are distributed among these distances:
158 20 0.04
159 434 0.94
160 8 0.02
161 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
CGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTCGATCGGCTGA
GCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCA
GCTAGACCGAGGGTTGCGGCAGCTGGTAC
Found at i:27697430 original size:318 final size:316
Alignment explanation
Indices: 27696846--27697667 Score: 966
Period size: 318 Copynumber: 2.6 Consensus size: 316
27696836 CCCAATCTAA
* * *
27696846 GCATAAAGAGTTCATTCCCAGTCTAAGATCTGATCGGACGAAAGGTTACGGTAGCAGTATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCTGATCGGACG-AGGGTTACGGTAGCAGGATCGACA
* * * * * *
27696911 GCACGTAGGGGGGACTGGGTCGATCCCCGACTTGCACATTCTGCCTC-TCTGGTCAGCTGAGTAA
65 GCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTC-GATCGGCTGAGCAC
* * *
27696975 CCGTACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAGCCA
129 CCGTACACTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * *
27697040 GACCGAGGGTTGTGGTAGTGGTACCGACAGCACGGAGAGGGGGACCAGGCCGATCCCCGACTTGC
194 GACCGAGGGTTGTGGCAGTGGGACCGACAACACGCAGAGGGGGACCAGGCCGATCCCCGACTTGC
* * * *
27697105 ACATTATGCCTCTTCGACCGGCTCAGCACCCGCACACTCGTTTCATGGGTTGAATTAT
259 ACATTATGCCTCTCCGACCGGCTCAGCACCCGCACACTCATTTCATGGATTGAATTAG
*
27697163 GCATACAGAGTTCATTCCTAGTCTAAGAT-TGGA-CTGGACTGAGGGTTACGGTAGCAGGATCGA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCT-GATC-GGAC-GAGGGTTACGGTAGCAGGATCGA
* * *
27697226 TAGCACGCAGGAGGGGACCGGGTTGATCCCCGGCTTGCACATTCTGCCTCTTCGATCGGCTGAGC
63 CAGCACGTAGG-GGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTCGATCGGCTGAGC
* * * * *
27697291 GCCCGTACTCTCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCAGC
127 ACCCGTACACTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGC
** * * ** ** *
27697356 TGGACCGAGGGTTGTGGCAGTGGGACCGGCAACATGCAGAGGGGGACTGGGCCGATCGTCGGCTT
192 CAGACCGAGGGTTGTGGCAGTGGGACCGACAACACGCAGAGGGGGACCAGGCCGATCCCCGACTT
* * ** * * *
27697421 GCGCATTATGCCTCTCCGATCGGCTCAGTTCCTGCACGCTCATTTCATGGATTGACTTAG
257 GCACATTATGCCTCTCCGACCGGCTCAGCACCCGCACACTCATTTCATGGATTGAATTAG
* * * * *** * * *
27697481 GCATACGGAGTTCATTCCCAGTCTAATATCTGATCGAACCGAGGGTTGCAACAGCTGGGTTGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCTGATCGGA-CGAGGGTTACGGTAGCAGGATCGACA
* ** * *
27697546 GCACGTAGGGGGGGACCTGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGATTGGCTGAGCAC
65 GCACGTA-GGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTCGATCGGCTGAGCAC
** * **
27697611 CCACACACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
129 CCGTACACTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
27697668 ATAAGGAGTT
Statistics
Matches: 423, Mismatches: 73, Indels: 17
0.82 0.14 0.03
Matches are distributed among these distances:
316 2 0.00
317 62 0.15
318 352 0.83
319 7 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (316 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCTGATCGGACGAGGGTTACGGTAGCAGGATCGACAG
CACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTCGATCGGCTGAGCACCC
GTACACTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGA
CCGAGGGTTGTGGCAGTGGGACCGACAACACGCAGAGGGGGACCAGGCCGATCCCCGACTTGCAC
ATTATGCCTCTCCGACCGGCTCAGCACCCGCACACTCATTTCATGGATTGAATTAG
Found at i:27698407 original size:26 final size:26
Alignment explanation
Indices: 27698377--27698429 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27698367 GTTGACTTAG
* * *
27698377 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
27698403 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
27698429 G
1 G
27698430 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:27698729 original size:159 final size:158
Alignment explanation
Indices: 27698516--27698939 Score: 456
Period size: 158 Copynumber: 2.7 Consensus size: 158
27698506 TTTGGCTTTT
* * * * * *
27698516 CGATCGGTTGAGCGCCCGTGCGCCCATTTCATGTGTTGGCTTAGGCATAGGGAGTTCATTCTATG
1 CGATCGGTTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
*
27698581 TCTAAGCCCCAGCTGGACCGAGGGTTATGGCAGCAGGACCGGCAGCACGCAGAAGAGGATCGGGT
66 TCTAAGCCCCAGCTGGACCGAGGGTTATGGCAGCAGGACCGGCAGCACGCAGAAG-GGACCGGGT
*
27698646 CAATCCCCAGCTTGCGCATTATGCCTCCC
130 CAATCCCCAGCTTGCGCATTATACCTCCC
* * *
27698675 CGATCGGTTCAGCGCCCGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCA-
1 CGATCGGTTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCA-TTCCAT
** * ** * * * * * ** * *
27698739 GTCTAAG-ATCGGACCAGACCAAGGGTTACGACAGCAAGATCGATAGCACGTAGGAGGGACCGGG
65 GTCTAAGCCCCAG-CTGGACCGAGGGTTATGGCAGCAGGACCGGCAGCACGCAGAAGGGACCGGG
* * * * ***
27698803 TCGATCCCCGGCTTGTGCATTCTACCTTTT
129 TCAATCCCCAGCTTGCGCATTATACCTCCC
* * ** * * *
27698833 TGGTCGGTTGAGCATCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
1 CGATCGGTTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
27698898 TCTAAGCCCCAGCTGGACCGAGGGTTATGGCAGCAGGACCGG
66 TCTAAGCCCCAGCTGGACCGAGGGTTATGGCAGCAGGACCGG
27698940 TAGCGAGATC
Statistics
Matches: 208, Mismatches: 53, Indels: 9
0.77 0.20 0.03
Matches are distributed among these distances:
157 5 0.02
158 108 0.52
159 91 0.44
160 4 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
CGATCGGTTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
TCTAAGCCCCAGCTGGACCGAGGGTTATGGCAGCAGGACCGGCAGCACGCAGAAGGGACCGGGTC
AATCCCCAGCTTGCGCATTATACCTCCC
Found at i:27699097 original size:26 final size:26
Alignment explanation
Indices: 27699061--27699113 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27699051 GTTGACTTAG
*
27699061 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
27699087 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
27699113 G
1 G
27699114 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:27699602 original size:26 final size:26
Alignment explanation
Indices: 27699563--27699615 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27699553 GTTAGCTTAG
*
27699563 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAATTCATTCCCA-GTCTAA
27699589 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
27699615 G
1 G
27699616 ATCTTACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:27700252 original size:158 final size:159
Alignment explanation
Indices: 27699829--27700275 Score: 456
Period size: 158 Copynumber: 2.8 Consensus size: 159
27699819 CTGACAGTGG
** * * * * *
27699829 GATCGACAGCATTCAG-GCGGGGATTGGGCTGATCCCCGGCTTGCATATTCTGCCTCTCAGGCCG
1 GATCGACAGCACGCAGAG-GGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGCCG
* * * * *
27699893 ATTGAGTGCTCGCACGCCCATTT-ATGGGTTGGCTTAGGCATAGGGAGTTCTTTCCATGTCTAAG
65 ACTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * ** *
27699957 CCCCAGCTGGACTGAGGGTTGTGGTAGCAG
130 CACCAGCCGGACTGAGGGTTGCGACAGCAA
* * * *
27699987 GATCGACAGCACGCAGAGGGGGATCGGGCCGAT-CCTCGGCTTACGCATTATGCCTCTACGGCCG
1 GATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCT-GGCTTGCACATTCTGCCTCTCCGGCCG
* ** * * * *
27700051 ACTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCA-GTCTAA
65 ACTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
* *
27700115 G-ATCAGACCGGATTGAGGGTTGCGACAGCAA
129 GCACCAG-CCGGACTGAGGGTTGCGACAGCAA
* * * * * * * *
27700146 GATCGATAGCACGTAGGGGGGGA-CTGGTCGATCCCTGACTTGCACATTCTGCCTCTCCGGCTGG
1 GATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGCCGA
*
27700210 CTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 CTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
27700275 A
131 A
27700276 TACGGAGTTC
Statistics
Matches: 230, Mismatches: 51, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 147 0.64
159 75 0.33
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (159 bp):
GATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGCCGA
CTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ACCAGCCGGACTGAGGGTTGCGACAGCAA
Found at i:27700283 original size:26 final size:26
Alignment explanation
Indices: 27700247--27700299 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27700237 GTTGGCTTAG
27700247 GCATACGGAGTTCATTCCAT-GTCTAA
1 GCATACGGAGTTCATTCC-TGGTCTAA
27700273 GCATACGGAGTTCATTCCTGGTCTAA
1 GCATACGGAGTTCATTCCTGGTCTAA
27700299 G
1 G
27700300 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTGGTCTAA
Found at i:27701158 original size:26 final size:26
Alignment explanation
Indices: 27701122--27701174 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27701112 GTTTCGTGGG
*
27701122 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27701148 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27701174 G
1 G
27701175 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27701564 original size:21 final size:21
Alignment explanation
Indices: 27701538--27701578 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
27701528 AGCCCCAGTC
27701538 GGACCGAGGGTTGTGGCAGCA
1 GGACCGAGGGTTGTGGCAGCA
27701559 GGACCGAGGGTTGTGGCAGC
1 GGACCGAGGGTTGTGGCAGC
27701579 CAGATCGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.17, C:0.20, G:0.49, T:0.15
Consensus pattern (21 bp):
GGACCGAGGGTTGTGGCAGCA
Found at i:27701709 original size:205 final size:205
Alignment explanation
Indices: 27701356--27701755 Score: 543
Period size: 205 Copynumber: 2.0 Consensus size: 205
27701346 CCCCAACCGA
* * * *
27701356 ACCGAGGGTTGTGGTAGCCAGATCGGTAGCGGGATCGACAGCATGCAGAGGAGGACCGGGCTAAT
1 ACCGAGGGTTGTGGCAGCCAGATCGATAGCGGGATCAACAGCATACAGAGGAGGACCGGGCTAAT
* * * *
27701421 CCCCGACTTGTGTATTATCCCTCTCCGGCCGGCCTCTCTGACCGGCTGGGCCCCCGCACGCTCGT
66 CCCAGACTTGCGTATTATCCCTCTCCGGCCAGCCTCTCTGACCGGCTGAGCCCCCGCACGCTCGT
* * * * *
27701486 TTCGTGGGTTGGCTTAGGCATACAAAGTTTATT-CCATGTCTAAGCCCCAGTCGGACCGAGGGTT
131 TTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCA-GTCTAAGACCAAATCGGACCGAGGGTT
27701550 GTGGCAGCAGG
195 GTGGCAGCAGG
* * *
27701561 ACCGAGGGTTGTGGCAGCCAGATCGATAGCGGGATCAACAGCATACAGAGGGGGATCGGGCTGAT
1 ACCGAGGGTTGTGGCAGCCAGATCGATAGCGGGATCAACAGCATACAGAGGAGGACCGGGCTAAT
* * * * * *
27701626 CTTCAG-CTTGCGTATTATGCCTCTTCGGCTAGCCTCTCTGACCGGTTGAGCCCCCGTACGCTCG
66 C-CCAGACTTGCGTATTATCCCTCTCCGGCCAGCCTCTCTGACCGGCTGAGCCCCCGCACGCTCG
** *
27701690 TTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGGGTT
130 TTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGACCAAATCGGACCGAGGGTT
27701755 G
195 G
27701756 CGACAGTAGG
Statistics
Matches: 168, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
205 163 0.97
206 5 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (205 bp):
ACCGAGGGTTGTGGCAGCCAGATCGATAGCGGGATCAACAGCATACAGAGGAGGACCGGGCTAAT
CCCAGACTTGCGTATTATCCCTCTCCGGCCAGCCTCTCTGACCGGCTGAGCCCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGACCAAATCGGACCGAGGGTTG
TGGCAGCAGG
Found at i:27702197 original size:159 final size:158
Alignment explanation
Indices: 27701667--27702210 Score: 436
Period size: 159 Copynumber: 3.4 Consensus size: 158
27701657 GCCTCTCTGA
** * * * *
27701667 CCGGTTGAGCCCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCA-GTC
1 CCGGTTGAGTGCCCGCACGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATT-CCATGTC
* ** * * *
27701731 TAAGATCAAATCGGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCA-GGGGGGA-TCGGGAT
65 TAAGATCAACT-GGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGGACT-AGGTT
* **
27701794 AATCCCCGACTTGCGTATTCTGCCTCTCTGG
128 GATCCCCGACTTGCGTATTCTGCCTCTCCAG
* * * * * * * * * *
27701825 TCTGCTGAGCGCCCGGATGCCCGTTTCGTTGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
1 CCGGTTGAGTGCCCGCACGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCATGTCT
** * * * * * * * *
27701890 AAGCCCCAACCGGACCGAGGGTTGTGGTAGCGGGA-CTGACTGCATGCAGAGGGGGAC-CGAGTC
66 AAG-ATCAACTGGACCGAGGGTTGCGGTAGCAGGATC-GACAGCACGCAGGGGGGGACTAG-GTT
* * * * *
27701953 GATCCCCGGCTTGCGCATTATGCCTCTTCAT
128 GATCCCCGACTTGCGTATTCTGCCTCTCCAG
* * * * * * * * *
27701984 CTGGCTT-AGTGTCGGCATGCTTGTTTCATGGGTTGACTTATGCATACGGGGTTCATTCCCA-GT
1 CCGG-TTGAGTGCCCGCACGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATT-CCATGT
* * * * *
27702047 CTAAGATCAGACTGGATCAAGAGTTGCGGTAGCAGGATCGACGGCACGTAGGGGGGGACTAGGTT
64 CTAAGATCA-ACTGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGGACTAGGTT
*
27702112 GATCCCCGACTTGCGTATTCTACCTCTCCAG
128 GATCCCCGACTTGCGTATTCTGCCTCTCCAG
* * *
27702143 CCGGTTGAGTGCCCACACGCTCATTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCT
1 CCGGTTGAGTGCCCGCACGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCATGTCT
27702208 AAG
66 AAG
27702211 CATACAGAGT
Statistics
Matches: 289, Mismatches: 84, Indels: 25
0.73 0.21 0.06
Matches are distributed among these distances:
157 4 0.01
158 88 0.30
159 191 0.66
160 6 0.02
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (158 bp):
CCGGTTGAGTGCCCGCACGCTCGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCATGTCT
AAGATCAACTGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGGACTAGGTTGAT
CCCCGACTTGCGTATTCTGCCTCTCCAG
Found at i:27702220 original size:26 final size:26
Alignment explanation
Indices: 27702184--27702236 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27702174 ATTGGCTTAG
*
27702184 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
27702210 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27702236 G
1 G
27702237 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27709410 original size:158 final size:158
Alignment explanation
Indices: 27709103--27709445 Score: 359
Period size: 158 Copynumber: 2.2 Consensus size: 158
27709093 CCCAATCTAA
* * * *** * *
27709103 GCATACGGAGATCATTCCCAGTCTAAGATCGGATCGGACCGCGGGTTGTGGTAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAAGGTTGCGGTAGTAGGATCGATA
* * * ** * * * **
27709168 GCACGCAAGGGGGATCAAGCCGATCCTCGGCTTGTGCATTATGCCTTTTCGATCGGCTCAGTGCC
66 GCACACAAGAGGGATCAAGCCAATCCTCGGCTTGCACATTATGCCTCTCCGATCGACTCAGCACC
* ** *
27709233 TGTACGCATGTTTTGTGGGTT-GACTTTG
131 TGCACGCATGTTTCATGGGTTAG-CTTAG
27709261 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAAGGTTGCGGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAAGGTTGCGGTAGTAGGATCGATA
* * * * * * *
27709326 GCACATATGAGGGATCGAGCCAATCCTCGGCTTGCACATTCTGCCTCTCCGGTCGATTGAGCACC
66 GCACACAAGAGGGATCAAGCCAATCCTCGGCTTGCACATTATGCCTCTCCGATCGACTCAGCACC
27709391 TGCACGC-TCGTTTCATGGGTTAGCTTAG
131 TGCACGCAT-GTTTCATGGGTTAGCTTAG
**
27709419 GCATACAAAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
27709446 CATACGGAGT
Statistics
Matches: 151, Mismatches: 31, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
157 4 0.03
158 146 0.97
159 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.27
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAAGGTTGCGGTAGTAGGATCGATA
GCACACAAGAGGGATCAAGCCAATCCTCGGCTTGCACATTATGCCTCTCCGATCGACTCAGCACC
TGCACGCATGTTTCATGGGTTAGCTTAG
Found at i:27709469 original size:26 final size:24
Alignment explanation
Indices: 27709427--27709477 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 24
27709417 AGGCATACAA
*
27709427 AGTTCATTCCATGTCTAAGCATACGG
1 AGTTCATTCCATATCTAA-CAT-CGG
27709453 AGTTCATTCCCA-ATCTAACATCGG
1 AGTTCATT-CCATATCTAACATCGG
27709477 A
1 A
27709478 TCGGACCGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 4 0.17
25 3 0.13
26 13 0.57
27 3 0.13
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (24 bp):
AGTTCATTCCATATCTAACATCGG
Found at i:27709553 original size:12 final size:12
Alignment explanation
Indices: 27709536--27709561 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
27709526 ACAGGGGGGA
27709536 CCGGGTCGATCC
1 CCGGGTCGATCC
27709548 CCGGGTCGATCC
1 CCGGGTCGATCC
27709560 CC
1 CC
27709562 AGTTCGTACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.46, G:0.31, T:0.15
Consensus pattern (12 bp):
CCGGGTCGATCC
Found at i:27710339 original size:26 final size:26
Alignment explanation
Indices: 27710310--27710362 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27710300 GTTGGCTTAG
27710310 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
27710336 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27710362 G
1 G
27710363 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27710793 original size:26 final size:26
Alignment explanation
Indices: 27710757--27710809 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27710747 GTTGACTTAG
27710757 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
27710783 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27710809 G
1 G
27710810 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27711103 original size:159 final size:157
Alignment explanation
Indices: 27710783--27711324 Score: 477
Period size: 159 Copynumber: 3.4 Consensus size: 157
27710773 CCCAGTCTAA
** * * * * * *
27710783 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACTGAGGGTTGTGGCAACAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * *
27710847 AGCACGCAGGGGGGATC-GAGCCGATCCCCGGCTTGCGCATTTTGTC-TCTCCAGCCGGCTGAGC
64 AGCACGCAGAGGGGACCAG-GTCGATCCCCGACTTGCGCATTATG-CATCTCCAGCCGACTCAAC
* ** *
27710910 GCCCACACG-TCCGTTTCGCGGGTTGGCTTAG
127 GCCCGCACGCT-CGTTTCATGGGTTGACTTAG
* * * *
27710941 GCATATGGAGTTCATTCCATGTCTAAGCCCTAGTTGGACCGAGGGTTGTGGTAGCAGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCC-AGTCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* *
27711006 GCACGCAGAAGGGGACTAGGTCGATCCCCGACTTGCGCATTATGCATCTCC-GACC-AGCTCAAT
65 GCACGCAG-AGGGGACCAGGTCGATCCCCGACTTGCGCATTATGCATCTCCAG-CCGA-CTCAAC
* *
27711069 GCCCGCATGCTCGTTTTATGGGTTGACTTAG
127 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * ** * * *
27711100 GCATACGAAGTTCATTCCCCTGTCTAAGATCGGATCGAACCGAGGGTTATGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAG-TCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * * * *
27711165 AGCACGCAGGGGGGACCAGGTCGATCCTCGATTTGTGCATTCTGCCTGTCCAGCCGACTGAGCGC
64 AGCACGCAGAGGGGACCAGGTCGATCCCCGACTTGCGCATTATGCATCTCCAGCCGACTCAACGC
*
27711230 CCGCACGCTCGTTTCATTGGTT-AGCTTAG
129 CCGCACGCTCGTTTCATGGGTTGA-CTTAG
* * * *
27711259 GCATACAGAGTTCACTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAG-CCCAGTCGGACCGAGGGTTGTGGCAGCAGGATCGACA
27711324 G
65 G
27711325 TGGGATCGAC
Statistics
Matches: 306, Mismatches: 64, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
157 3 0.01
158 97 0.32
159 156 0.51
160 50 0.16
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCAGTCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACGCAGAGGGGACCAGGTCGATCCCCGACTTGCGCATTATGCATCTCCAGCCGACTCAACGCCC
GCACGCTCGTTTCATGGGTTGACTTAG
Found at i:27711458 original size:26 final size:26
Alignment explanation
Indices: 27711429--27711481 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27711419 GTTGACTTAG
*
27711429 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
27711455 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27711481 G
1 G
27711482 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27711815 original size:159 final size:158
Alignment explanation
Indices: 27711592--27711955 Score: 347
Period size: 158 Copynumber: 2.3 Consensus size: 158
27711582 CCCGTAGGCC
* * ** * ** * *
27711592 CGTTTCATGGGTTGGCTTAGACATTGGGAGTTCATTCAATGTCT-A-ATCCCCAGCCAGACCGAG
1 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGAT-CAGATCGA-ACCGAG
** * * ** * * *
27711655 GGTTGTGGCAACGGGACCGGTAGCACGCAGAGGGGAATCGGGCTGATCCCCGACTTGTGCATTAT
64 GGTTACGACAACAGGACCGACAGCACGCAG-GGGGAACCGGGCCGATCCCCGACTTATGCATTAT
*
27711720 GCCTCTCTGGTCAGCTCAGCACCCACACACT
128 GCCTCTCTGGTCAGCTAAGCACCCACACACT
*
27711751 CGTTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAGATCAGATCGAACCGAGG
1 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGAACCGAGG
* * * * *
27711815 GTTACGACAGCAGGATCGACAGCACGCAGGGGGAACCGGGCCGATCCCTGGCTTATGCATTCTGC
65 GTTACGACAACAGGACCGACAGCACGCAGGGGGAACCGGGCCGATCCCCGACTTATGCATTATGC
* * * ** **
27711880 CTCTTTGGTCGGTTAAGCACCCGTATGCT
130 CTCTCTGGTCAGCTAAGCACCCACACACT
** * *
27711909 CGTTTTGTGGGTTGGCTTCGGCATACGGAGTTCATTCCATGTCTAAG
1 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAG
27711956 CAAACGAAGT
Statistics
Matches: 164, Mismatches: 37, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
157 3 0.02
158 89 0.54
159 63 0.38
160 7 0.04
161 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (158 bp):
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGATCAGATCGAACCGAGGG
TTACGACAACAGGACCGACAGCACGCAGGGGGAACCGGGCCGATCCCCGACTTATGCATTATGCC
TCTCTGGTCAGCTAAGCACCCACACACT
Found at i:27712344 original size:26 final size:26
Alignment explanation
Indices: 27712308--27712360 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27712298 GTTGACTTAG
*
27712308 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
27712334 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27712360 G
1 G
27712361 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27712698 original size:159 final size:157
Alignment explanation
Indices: 27712334--27712699 Score: 360
Period size: 159 Copynumber: 2.3 Consensus size: 157
27712324 CCCAGTCTAA
* * ** *
27712334 GCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGGTA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCGGACCAGATTGAGGGTTGCGACAGTAGGATCGGCA
* * * * *
27712399 GCACACAGGGGGGACCGAGCTGATCCTCGGCTTACGCATTCTGCCTTTCCGACCAGCTGAGTGCC
65 GCACACAGGGGGGACCGAGCCGATCCTCGGCTTACGCAATATGCCTTTCCGACCAGCTCAGCGCC
*
27712464 CGCACGCCCGTTTCATGGGTTGGCTTAG
130 CGCACGCCCGTTTCATGGGTTGACTTAG
* * * * ** * * * *
27712492 GCATAGGGAGCTCATTCCATGTCGAAG-CCCTAGCCAGATTGAAGGTTGTGGCAGTGGGATCGGC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCGGA-CCAGATTGAGGGTTGCGACAGTAGGATCGGC
** * * * **
27712556 AGCACGTAGAGGGGGACCGGGCCGATCC-CTGGCTTGCGCAATATGCCTCTT-TGACTGGCTCAG
64 AGCACACAG-GGGGGACCGAGCCGATCCTC-GGCTTACGCAATATGCCT-TTCCGACCAGCTCAG
* *
27712619 CGCCCGCACGCTCGTTTCATGGGTTGACTTAT
126 CGCCCGCACGCCCGTTTCATGGGTTGACTTAG
* *
27712651 GCATATGGAGTTCATTGCCAATCTAAGATCGGACCAGATTGAGGGTTGC
1 GCATACGGAGTTCATT-CCAGTCTAAGATCGGACCAGATTGAGGGTTGC
27712700 AGCAGCAGGA
Statistics
Matches: 162, Mismatches: 39, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.02
158 52 0.32
159 100 0.62
160 7 0.04
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCGGACCAGATTGAGGGTTGCGACAGTAGGATCGGCAG
CACACAGGGGGGACCGAGCCGATCCTCGGCTTACGCAATATGCCTTTCCGACCAGCTCAGCGCCC
GCACGCCCGTTTCATGGGTTGACTTAG
Found at i:27713266 original size:26 final size:26
Alignment explanation
Indices: 27713216--27713268 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27713206 GTTGGCTTAC
*
27713216 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
*
27713242 GCATACGGATTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
27713268 G
1 G
27713269 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:27713956 original size:26 final size:26
Alignment explanation
Indices: 27713926--27713978 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
27713916 GTTGACTTAG
*
27713926 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
** *
27713952 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
27713978 G
1 G
27713979 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAAGTCTAA
Found at i:27714472 original size:158 final size:154
Alignment explanation
Indices: 27714016--27714476 Score: 412
Period size: 159 Copynumber: 2.9 Consensus size: 154
27714006 CGGGATCGGC
* *
27714016 AGCATGTAGGGGGGACTGGGCCGATCCTCGGCTTACGCATTCTACCTCTCCGGTC-AGCTAAGCG
1 AGCATGTAGGGGGGACTGGGCCGATCC-CGGCTTGCGCATTCTACCTCT-CAGTCGA-CTAAGCG
* * * *
27714080 CCCGCACACCCGTTTCATGGGTTGGCTTAGGCATA-GCGAGTTCATACCATGTCTAAGCCCCAGC
63 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-GAGTTCATTCCATGTCTAAG-CCCAGC
* * * *
27714144 CGGACCGAGGGTTGTGGCAGCGGTACCGAT
126 CGAAACGAGGGTTGTGACAGAGGTA-CGAT
* * * * * * * * * *
27714174 AGCATGCAGAGGGGGACTAGGCCAATCCCTGACTTGCGCATTATGCCTCTCCGATCGGCTCAGCA
1 AGCATGTAG-GGGGGACTGGGCCGATCCC-GGCTTGCGCATTCTACCTCTCAG-TCGACTAAGCG
* * * ** *
27714239 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-ATCTAAGATCGGAC
63 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAG-C
*
27714303 CAAAACGAGGGTTGCT-ACAGTAGGATA-GAT
126 CGAAACGAGGGTTG-TGACAG-AGG-TACGAT
* * * *
27714333 AGCACGTAGGGGGGA-TCGGGCTGGTCCACGGCTTGCGCATTCTACCTCTGCAGTCGACTGAGCG
1 AGCATGTAGGGGGGACT-GGGCCGATCC-CGGCTTGCGCATTCTACCTCT-CAGTCGACTAAGCG
* *
27714397 CCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGTC
63 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGCC
*
27714462 GAATCGAGGGTTGTG
127 GAAACGAGGGTTGTG
27714477 GTAGCAGGAC
Statistics
Matches: 238, Mismatches: 49, Indels: 32
0.75 0.15 0.10
Matches are distributed among these distances:
157 5 0.02
158 112 0.47
159 113 0.47
160 6 0.03
161 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (154 bp):
AGCATGTAGGGGGGACTGGGCCGATCCCGGCTTGCGCATTCTACCTCTCAGTCGACTAAGCGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGCCGAAA
CGAGGGTTGTGACAGAGGTACGAT
Found at i:27715156 original size:26 final size:27
Alignment explanation
Indices: 27715104--27715185 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
27715094 GTTTTCTCTT
*
27715104 AGCCATACGAAGGTTCATATCCATGTCTA
1 AGCCATACGGA-GTTCAT-TCCATGTCTA
*
27715133 AG-CATACGGAGTTCATTGCATGTCTA
1 AGCCATACGGAGTTCATTCCATGTCTA
27715159 AGCCATACGGAGTTC-TTCCA-GTCTA
1 AGCCATACGGAGTTCATTCCATGTCTA
27715184 AG
1 AG
27715186 ATTTTGAGCC
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
25 7 0.14
26 15 0.31
27 18 0.37
28 7 0.14
29 2 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (27 bp):
AGCCATACGGAGTTCATTCCATGTCTA
Found at i:27716108 original size:26 final size:26
Alignment explanation
Indices: 27716078--27716133 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
27716068 TGGGTTGACT
27716078 TAAGCATAC-GAAGTTCATCCCCAGTC
1 TAAGCATACAG-AGTTCATCCCCAGTC
*
27716104 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
27716130 TAAG
1 TAAG
27716134 ATCAAACCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:27717182 original size:26 final size:26
Alignment explanation
Indices: 27717146--27717198 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27717136 GTTGGCTTAG
27717146 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
27717172 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27717198 G
1 G
27717199 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27717550 original size:26 final size:26
Alignment explanation
Indices: 27717514--27717566 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27717504 GTTGACTTAG
*
27717514 GCATATGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
27717540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27717566 G
1 G
27717567 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27723924 original size:26 final size:26
Alignment explanation
Indices: 27723895--27723947 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27723885 GTTGACTTAG
*
27723895 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
27723921 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
27723947 G
1 G
27723948 ATCGGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:27724432 original size:26 final size:26
Alignment explanation
Indices: 27724395--27724447 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27724385 GTCGGCTTTG
27724395 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
27724421 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
27724447 G
1 G
27724448 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:27724621 original size:26 final size:26
Alignment explanation
Indices: 27724592--27724644 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27724582 GTTGACTTAG
*
27724592 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
* *
27724618 GCATATGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
27724644 G
1 G
27724645 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTGCATCCCCAGTCTAA
Found at i:27726531 original size:159 final size:157
Alignment explanation
Indices: 27726303--27726731 Score: 441
Period size: 159 Copynumber: 2.7 Consensus size: 157
27726293 TAGCACGTAG
* * * * * * *
27726303 GGGGGATCGGGCCGACCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCCGCACACC
1 GGGGGATCGGGCTGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCT
* * * *
27726368 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTATGCCCCAA-TCGGACCGAGG
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-TGTCTAAGACCCAACT-GGACCAAGG
*** * *
27726432 GTTGTGGCAGTGGGA-CTGCCAGCATGCAAA
129 GTTGTGGCAGCAAGATC-GACAGAATGC-AA
* * ** * *
27726462 GGGGGACCGGGCTGATCCCTGACTTGCGCATTATGCCTCTCCCATCGGCTGAGCACCCGTACGCT
1 GGGGGATCGGGCTGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCT
* * * * **
27726527 CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCACAGTCTAAGATCGGACTGGACCAAGGG
66 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CTGTCTAAGACCCAACTGGACCAAGGG
* *
27726592 TTGTGGTAGCAAGATCGACAGAATGCAG
130 TTGTGGCAGCAAGATCGACAGAATGCAA
** * * *
27726620 GGGGGATCGGG-TCGATCCCCAACTTGCACATTCTGCCTCTCGGGTCAGCTGAGCGCCCGCACGC
1 GGGGGATCGGGCT-GATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGC
* *
27726684 TCCTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
65 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-TGTCTAAG
27726732 CATACTGAGC
Statistics
Matches: 219, Mismatches: 46, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
157 2 0.01
158 93 0.42
159 121 0.55
160 3 0.01
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (157 bp):
GGGGGATCGGGCTGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCTGTCTAAGACCCAACTGGACCAAGGGT
TGTGGCAGCAAGATCGACAGAATGCAA
Found at i:27726704 original size:158 final size:156
Alignment explanation
Indices: 27726191--27726731 Score: 498
Period size: 158 Copynumber: 3.4 Consensus size: 156
27726181 CTCTCCGACT
* * * * *
27726191 GGCTGAGCGCCCACATGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAA
1 GGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGAAGTTCATT-CCAGTCTAA
** ** * ** * *
27726256 GATCGGACCAGACCGAGGGTTACGGTAGCAAGATTGGTAGCACGTAGGGGGGATCGGGCCGA-CC
65 GATCGGACTGGACCGAGGGTTGTGGTAGCAAGATCGACAGCATGCAGGGGGGATCGGG-CGATCC
* *
27726320 CCTGGCTTGCGCATTCTGCCTCTCCGGCC
129 CC-GACTTGCGCATTCTGCCTCTCCGGTC
* * * * * *
27726349 GGTTGAGCGCCCGCACAC-CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTA
1 GGCTGAGCGCCCGCACGCTCC-TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCC-AGTCTA
* * ** * * *** * * *
27726413 TG-CCCCAATCGGACCGAGGGTTGTGGCAGTGGGA-CTGCCAGCATGCAAAGGGGGACCGGGCTG
64 AGATCGGACT-GGACCGAGGGTTGTGGTAGCAAGATC-GACAGCATGC-AGGGGGGATCGGGC-G
* * **
27726476 ATCCCTGACTTGCGCATTATGCCTCTCCCATC
125 ATCCCCGACTTGCGCATTCTGCCTCTCCGGTC
* * *
27726508 GGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCACAGTCTA
1 GGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTC-CAGTCTA
* *
27726572 AGATCGGACTGGACCAAGGGTTGTGGTAGCAAGATCGACAGAATGCAGGGGGGATCGGGTCGATC
64 AGATCGGACTGGACCGAGGGTTGTGGTAGCAAGATCGACAGCATGCAGGGGGGATCGGG-CGATC
* * *
27726637 CCCAACTTGCACATTCTGCCTCTCGGGTC
128 CCCGACTTGCGCATTCTGCCTCTCCGGTC
* *
27726666 AGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAA
1 GGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCA-GTCTAA
27726731 G
65 G
27726732 CATACTGAGC
Statistics
Matches: 296, Mismatches: 72, Indels: 30
0.74 0.18 0.08
Matches are distributed among these distances:
157 7 0.02
158 166 0.56
159 114 0.39
160 9 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GGCTGAGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAGTCTAAG
ATCGGACTGGACCGAGGGTTGTGGTAGCAAGATCGACAGCATGCAGGGGGGATCGGGCGATCCCC
GACTTGCGCATTCTGCCTCTCCGGTC
Found at i:27727120 original size:26 final size:26
Alignment explanation
Indices: 27727084--27727136 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27727074 GTAGACTTAG
*
27727084 GCATACTGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
27727110 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27727136 G
1 G
27727137 ATCGGCCTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27729204 original size:158 final size:158
Alignment explanation
Indices: 27728741--27729230 Score: 517
Period size: 158 Copynumber: 3.1 Consensus size: 158
27728731 GTCTAAGCAC
* *
27728741 ACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCGAGGGTTACGGTAGCAGGATCGACAACAC
1 ACGGAGTTCATT-CCAGTCTAAGATCGAACCGAATCGAGGGTTGCGGTAGCAGGATCGACAGCAC
* ** * **
27728806 GCAGGGGGGATCAGG-CTGATCCTTGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCACCCGC
65 GCAGGGGGGATCGGGTCTGATCCCCGGCTTACGCATTATGCCTCTCCGATCGGCTGAGTGCCCGC
* * * *
27728870 ACGCCCTTTTCGTGGGTTGGCTTAGGCAT
130 ACGCTCATTTCATGGGTTGACTTAGGCAT
* * * * ** * * * *
27728899 AGGGAGTTCATTCCATGTGTAAGCTCTAGTCGAATCGAGGGTTGTGGCAGC-GAGACCAACAGCA
1 ACGGAGTTCATTCCA-GTCTAAGATCGAACCGAATCGAGGGTTGCGGTAGCAG-GATCGACAGCA
* * * *
27728963 CGCAGAGGGGGATCGAGT-TGATCCCCGACTTGC-CTATTATGCCTCTCCGATCGGCTCAGTGCC
64 CGCAG-GGGGGATCGGGTCTGATCCCCGGCTTACGC-ATTATGCCTCTCCGATCGGCTGAGTGCC
*
27729026 CGCACGCTCGTTTCATGGGTTGACTTAGGCAT
127 CGCACGCTCATTTCATGGGTTGACTTAGGCAT
* * * *
27729058 ATGGAGTTCATTCCTAGTCTAAGATCGAACCAGACT-GAGGGTTGCGATAGCAGGATCGACAGTA
1 ACGGAGTTCATTCC-AGTCTAAGATCGAACC-GAATCGAGGGTTGCGGTAGCAGGATCGACAGCA
* * * * **
27729122 CGCAGGGGGGATCGGGTCAG-TCCCCGGCTTACGCATTTTGCCTCTTCGACCGATTGAGTGCCCG
64 CGCAGGGGGGATCGGGTCTGATCCCCGGCTTACGCATTATGCCTCTCCGATCGGCTGAGTGCCCG
*
27729186 CATGCTCATTTCATGGGTT-AGCTTAGGCAT
129 CACGCTCATTTCATGGGTTGA-CTTAGGCAT
27729216 ACGGAGTTCATTCCA
1 ACGGAGTTCATTCCA
27729231 TGCCTAAGCA
Statistics
Matches: 269, Mismatches: 52, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
157 6 0.02
158 136 0.51
159 122 0.45
160 5 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
ACGGAGTTCATTCCAGTCTAAGATCGAACCGAATCGAGGGTTGCGGTAGCAGGATCGACAGCACG
CAGGGGGGATCGGGTCTGATCCCCGGCTTACGCATTATGCCTCTCCGATCGGCTGAGTGCCCGCA
CGCTCATTTCATGGGTTGACTTAGGCAT
Found at i:27730064 original size:869 final size:869
Alignment explanation
Indices: 27728591--27730187 Score: 2031
Period size: 869 Copynumber: 1.8 Consensus size: 869
27728581 TAAGACCAGT
* * * * * * * *
27728591 AGCAGGATCGACAGTACGCAAGGGGGGACCGGGTCGATCCTCGGCTTGCGTATTCTGCCTCTTCA
1 AGCAGGATCGACAGCACGCAAAGGGGGACCGAGTCGATCCTCGACTTACGCATTATACCTCTTCA
* *
27728656 GTCGGCCTCTCCGGTCAGCTGAGTGCCCACACGTACGTTTCATGCGTTGACTTCAGAATACGGAG
66 GTCGGCCTCTCCGATCAGCTGAGCGCCCACACGTACGTTTCATGCGTTGACTTCAGAATACGGAG
* * * * * *
27728721 TTCATCCCCAGTCTAAGCACACGGAGTTCATTCCCAGTCTAAGATCGAACCGAATCGAGGGTTAC
131 TTCATCCCCAATCTAAGCACACGGAGGTAAATCCCAGTCTAAGATCGAACCGAACCAAGGGTTAC
** * * * * ** **
27728786 GGTAGCAGGATCGACAACACGCAGGGGGGATCAGGCTGATCCTTGGCTTACGCATTCTGCCTCTC
196 GACAGCAGGATCGACAACACCCAGAGGGGACCAGACCAATCCCCGGCTTACGCATTCTGCCTCTC
* ** *
27728851 CGATCGGCTGAGCACCCGCACGCCCTTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
261 CGATCGACTGAGCACCCAAACGCCCTTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
* * * *
27728916 TGTAAGCTCTAGTCGAATCGAGGGTTGTGGCAGCGAGACCAACAGCACGCAGAGGGGGATCGAGT
326 TCTAAGCCCCAGTCGAATCGAGGGTTGTGGCAGCGAGACCAACAGCACGCAGAGGGGGATCGAGC
* * * ** * *
27728981 TGATCCCCGACTTGCCTATTATGCCTCTCCGATCGGCTCAGTGCCCGCACGCTCGTTTCATGGGT
391 TAATCCCCGACTTACCTATTATGCCTCTCCGACCGGCTCAACGCCCGAACGCTCCTTTCATGGGT
* * * *
27729046 TGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGAACCAGACTGAGGGTTGCGATAGCAG
456 TGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAG
* * * * ** * *
27729111 GATCGACAGTACGCAGGGGGGATCGGGTCAGTCCCCGGCTTACGCATTTTGCCTCTTCGACCGAT
521 AATCAACAGAACGCAGGCGGGATCGACTCAGTCCCCGGCTTACGCATTTTGCCTCTCCGACCGAC
* ** * * *
27729176 TGAGTGCCCGCATGCTCATTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCA
586 TAAACGCCCACACGCTCATTTCATGGGTTAGCTTAGGCAGACGGAGTTCATTCCATGCCTAAGCA
* * * * * *
27729241 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAAGGATGCGACAGTAGGACCAGCAATA
651 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGATGCGACAGCAAGACCAGCAACA
*
27729306 GGATCGGTAGCACCCAAGGGGGATCTGGTTGATCCTCGACTTGTGCATTCTGCTTCTCTGGCCGG
716 GGATCGATAGCACCCAAGGGGGATCTGGTTGATCCTCGACTTGTGCATTCTGCTTCTCTGGCCGG
27729371 TTGAGCACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
781 TTGAGCACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
27729436 CCCAGTCGGACCAAGGGTTGTGGC
846 CCCAGTCGGACCAAGGGTTGTGGC
* * * *
27729460 AGCAGGATCGGCAGCACGCAAAGGGGGACCGAGTTGATCCTCGATTTACGCATTATACCTCTTCG
1 AGCAGGATCGACAGCACGCAAAGGGGGACCGAGTCGATCCTCGACTTACGCATTATACCTCTTCA
* * * * * **
27729525 GTCGGCCTCTCCGATC-GACTGAGCGCTCGCACGCT-CGTTTCGTGGGTTGACTT-AGGCATGTG
66 GTCGGCCTCTCCGATCAG-CTGAGCGCCCACACG-TACGTTTCATGCGTTGACTTCA-GAATACG
* *
27729587 GAGTTCATCCCCAATCTAAGCATACGGAGGTAAATCCCAGTCTAAGATTGAACC-AGACCAAGGG
128 GAGTTCATCCCCAATCTAAGCACACGGAGGTAAATCCCAGTCTAAGATCGAACCGA-ACCAAGGG
* * ** * *
27729651 TTGCGACAGTAGGATCGGTAGCACCCAGAGGGGACCAGACCAATCCCCGGCTTATGCATTCTGCC
192 TTACGACAGCAGGATCGACAACACCCAGAGGGGACCAGACCAATCCCCGGCTTACGCATTCTGCC
** *
27729716 TCTCCGATCGACTGAGTGCCCAAATGCCCTTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTC
257 TCTCCGATCGACTGAGCACCCAAACGCCCTTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTC
* * * * *
27729781 CATGTCTAAGCCCCATTCGGA-CTGAGGGTTGTGGTAGCGGGACCGACAGCACGCAGAGGGGGAT
322 CATGTCTAAGCCCCAGTCGAATC-GAGGGTTGTGGCAGCGAGACCAACAGCACGCAGAGGGGGAT
* * * * * * *
27729845 CGGGCTAATCCTCGAGTTACGC-ATTATGCCTCTTCGGCCGGTTCAACGCCCGAATGCTCCTTTC
386 CGAGCTAATCCCCGACTTAC-CTATTATGCCTCTCCGACCGGCTCAACGCCCGAACGCTCCTTTC
*
27729909 ATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGAATC-GAACCGAGGGTTGCG
450 ATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGAACCAG-ACCGAGGGTTGCG
* * ** *
27729973 GCAGCAGAATCAACAGAACGCAGGCGGGACTCGACT-GGTCCCCGGCTTGTGTATTTTGCCTCTC
514 ACAGCAGAATCAACAGAACGCAGGCGGGA-TCGACTCAGTCCCCGGCTTACGCATTTTGCCTCTC
* * * *
27730037 CGACTGGCTAAACGCCCACACGCTCATTTCATGGGTTGGCTTAGGTAGACGGAGTTCATTCCATG
578 CGACCGACTAAACGCCCACACGCTCATTTCATGGGTTAGCTTAGGCAGACGGAGTTCATTCCATG
* * * *
27730102 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAAGAC
643 CCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGATGCGACAGCAAGAC
*
27730167 CAGCAGCAGGATCGATAGCAC
708 CAGCAACAGGATCGATAGCAC
27730188 GTAGGGGGGA
Statistics
Matches: 605, Mismatches: 115, Indels: 16
0.82 0.16 0.02
Matches are distributed among these distances:
868 5 0.01
869 594 0.98
870 6 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (869 bp):
AGCAGGATCGACAGCACGCAAAGGGGGACCGAGTCGATCCTCGACTTACGCATTATACCTCTTCA
GTCGGCCTCTCCGATCAGCTGAGCGCCCACACGTACGTTTCATGCGTTGACTTCAGAATACGGAG
TTCATCCCCAATCTAAGCACACGGAGGTAAATCCCAGTCTAAGATCGAACCGAACCAAGGGTTAC
GACAGCAGGATCGACAACACCCAGAGGGGACCAGACCAATCCCCGGCTTACGCATTCTGCCTCTC
CGATCGACTGAGCACCCAAACGCCCTTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
TCTAAGCCCCAGTCGAATCGAGGGTTGTGGCAGCGAGACCAACAGCACGCAGAGGGGGATCGAGC
TAATCCCCGACTTACCTATTATGCCTCTCCGACCGGCTCAACGCCCGAACGCTCCTTTCATGGGT
TGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCAG
AATCAACAGAACGCAGGCGGGATCGACTCAGTCCCCGGCTTACGCATTTTGCCTCTCCGACCGAC
TAAACGCCCACACGCTCATTTCATGGGTTAGCTTAGGCAGACGGAGTTCATTCCATGCCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGATGCGACAGCAAGACCAGCAACA
GGATCGATAGCACCCAAGGGGGATCTGGTTGATCCTCGACTTGTGCATTCTGCTTCTCTGGCCGG
TTGAGCACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
CCCAGTCGGACCAAGGGTTGTGGC
Found at i:27730320 original size:26 final size:26
Alignment explanation
Indices: 27730290--27730342 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27730280 GTTGACTTAG
27730290 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
27730316 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
27730342 G
1 G
27730343 ATCGAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:27730669 original size:26 final size:26
Alignment explanation
Indices: 27730633--27730685 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27730623 GTTGACTTAG
* *
27730633 GCATACGAAGTTTATTCC-ATGTCTAA
1 GCATACAAAGTTCATTCCTA-GTCTAA
27730659 GCATACAAAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCTAGTCTAA
27730685 G
1 G
27730686 AGTCTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCTAGTCTAA
Found at i:27731214 original size:159 final size:156
Alignment explanation
Indices: 27730838--27731328 Score: 395
Period size: 159 Copynumber: 3.1 Consensus size: 156
27730828 CCCAATCTAA
* * * *
27730838 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGGGGCAGCAGGATCGGTA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATC-GACCAAAGGTTGTGGCAGCAGGATCGATA
* * * * *
27730903 GCACGCATGGGGATCGGGTCGATCCCCGGCTTGAGCATTCTGCCTCTCCGGCCAGCTGAGCGCCC
65 GCACGCAGGGGGACCGGGTCGATCCCCGACTTGAGCATTATGCCTCTCCGGCCAGCTCAGCGCCC
*
27730968 GTACGCACATTTCGTAGGTTGGCTTAG
130 GTACGCACATTTCGTAGGTTGACTTAG
* * * * * *
27730995 GCATAGGGAGTTCATTCCACA-TCTAA-TTCCCAG-TCGAACAGAGGATTGTGGCAACGGGATCG
1 GCATATGGAGTTCATTCC-CAGTCTAAGAT--CAGATCGACCAAAGG-TTGTGGCAGCAGGATCG
* * *
27731057 ATAGCACATAG-AGGGGGACCGGG-CTGATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTC
62 ATAGCAC---GCAGGGGGACCGGGTC-GATCCCCGACTTGAGCATTATGCCTCTCCGGCCAGCTC
** * *
27731120 AGCGCTTGTACG-ATCATTTTGTGGGTTGACTTAG
123 AGCGCCCGTACGCA-CATTTCGTAGGTTGACTTAG
* * * * *
27731154 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATAGCACCAAAGGTTATGGTAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCG-ACCAAAGGTTGTGGCAGCAGGATCGATA
* * * * * * * * * *
27731219 GCACGCAAGGGGGATCAGGCCGATCCCTGGCTT-ACGCATTCTGTCTCTTCGGCC-GACTGAGTG
65 GCACGC-AGGGGGACCGGGTCGATCCCCGACTTGA-GCATTATGCCTCTCCGGCCAG-CTCAGCG
* * * * * *
27731282 TCCGCACGCTCGTTTCGTGGGTTGGCTTAG
127 CCCGTACGCACATTTCGTAGGTTGACTTAG
*
27731312 GCATACGGAGTTCATTC
1 GCATATGGAGTTCATTC
27731329 AATGTCTAAG
Statistics
Matches: 261, Mismatches: 54, Indels: 37
0.74 0.15 0.11
Matches are distributed among these distances:
156 7 0.03
157 45 0.17
158 88 0.34
159 113 0.43
160 8 0.03
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGACCAAAGGTTGTGGCAGCAGGATCGATAG
CACGCAGGGGGACCGGGTCGATCCCCGACTTGAGCATTATGCCTCTCCGGCCAGCTCAGCGCCCG
TACGCACATTTCGTAGGTTGACTTAG
Found at i:27731477 original size:184 final size:184
Alignment explanation
Indices: 27731161--27731523 Score: 465
Period size: 184 Copynumber: 2.0 Consensus size: 184
27731151 TAGGCATATG
* * *
27731161 GAGTTCATTCCCAGTCTAAGATCGGATAGCACCAAAGGTTATGGTAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATAGCACCAAAGGTTATGGCAGCAGGATCGACAGCAAGCA
* * * * * * * *
27731226 AGGGGGATCAGGCCGATCCCTGGCTTACGCATTCTGTCTCTTCGGCCGACTGAGTGTCCGCACGC
66 AGGGGGATCAGGCCAATCCCCGGCTTACACATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACGC
* *
27731291 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTAAGCATACA
131 TCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCAATGTCTAAGCATACA
* * * * * * * * *
27731345 GAGTTCATTCCCAGTGTAAGATCAGATCGGATCGAGGGTTGTGGCAGTAGGATCGATAGCAAGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATAGCACCAAAGGTTATGGCAGCAGGATCGACAGCAAGCA
* * * *
27731410 AGGGGGATCGGGCCAATCCCCGGCTTGCACATTCTGCCTCTCCAGTCGACTGAGCGCCCGTACGC
66 AGGGGGATCAGGCCAATCCCCGGCTTACACATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACGC
* * *
27731475 TCGTTTCATGGGTTGGCTTGGGCATACAGAGTTCCTTCCATGTCTAAGC
131 TCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCAATGTCTAAGC
27731524 CCCACCCGGA
Statistics
Matches: 150, Mismatches: 29, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
184 150 1.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (184 bp):
GAGTTCATTCCCAGTCTAAGATCAGATAGCACCAAAGGTTATGGCAGCAGGATCGACAGCAAGCA
AGGGGGATCAGGCCAATCCCCGGCTTACACATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACGC
TCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCAATGTCTAAGCATACA
Found at i:27731710 original size:26 final size:26
Alignment explanation
Indices: 27731680--27731732 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27731670 GTTGACTTAG
27731680 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
27731706 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27731732 G
1 G
27731733 ATCAGACGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27732231 original size:26 final size:26
Alignment explanation
Indices: 27732180--27732232 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27732170 GTTGGCTTAG
*
27732180 GCATACGGAGGTCATTCCATGTCTAA
1 GCATACGGAGGTCATTCCATGCCTAA
*
27732206 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGGTCATT-CCATGCCTAA
27732232 G
1 G
27732233 ATTTTCAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCATGCCTAA
Found at i:27737492 original size:26 final size:26
Alignment explanation
Indices: 27737456--27737508 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
27737446 GTTGACTTAG
27737456 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27737482 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27737508 G
1 G
27737509 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27737950 original size:26 final size:25
Alignment explanation
Indices: 27737920--27737971 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
27737910 GTTGTCTTAG
27737920 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCA-GTCTAA
**
27737946 GCATATGGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
27737971 G
1 G
27737972 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:27739854 original size:159 final size:153
Alignment explanation
Indices: 27739597--27740040 Score: 473
Period size: 159 Copynumber: 2.9 Consensus size: 153
27739587 GGTTCACGGT
* * *
27739597 AGCAGGATCGACAGCATGCAGGGGGGGATCAGG-TCGATCCCCGGCTTGCGCATTCTGCCTCTCC
1 AGCAGGATCGACAGCACGCAGAGGGGGATCGGGCT-GATCCCCGGCTTGCGCATTCTGCCTCTCC
* * * * * *
27739661 AACCGGTTGAGTGCCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGT
65 GA-CGGCTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* *
27739726 CTAACCCCCAATCAGACCGAGGGTTGTGGC
129 CTAA-----AATCAGACCGAGGGTTGCGAC
** * * * *
27739756 AGTGGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCTCGACTTACGCATTATGCCTCTCCG
1 AGCAGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCG
* * * * *
27739821 ATCGGCTCAGTGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATATGAAGTTCATTCCCA-GT
66 A-CGGCTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGT
* *
27739885 CTAAGATCAGATCGAGGGTTGCGAC
129 CTAAAATCAGACCGAGGGTTGCGAC
* * * * *
27739910 AGCAGGATTGACAGCACGC--AGGGGGACCGAGCTGGTCCCCGGCTTGCACATTCTGCCTCTCCG
1 AGCAGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCG
** **
27739973 ACTGGCTGAACGCCCGCACGCTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
66 AC-GGCTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
27740038 TAA
130 TAA
27740041 GCATACACAA
Statistics
Matches: 237, Mismatches: 44, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
151 4 0.02
152 89 0.38
154 33 0.14
159 107 0.45
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (153 bp):
AGCAGGATCGACAGCACGCAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCG
ACGGCTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAAATCAGACCGAGGGTTGCGAC
Found at i:27740763 original size:26 final size:26
Alignment explanation
Indices: 27740733--27740785 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27740723 GTTGGCTTAG
27740733 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
27740759 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27740785 G
1 G
27740786 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27741131 original size:26 final size:26
Alignment explanation
Indices: 27741101--27741151 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
27741091 GTTCACTTAG
* *
27741101 GCATACGGAGTTCATCCCCAGTCTAT
1 GCATACGAAGTTCATCACCAGTCTAT
*
27741127 GCATACGAAGTTCATTACCAGTCTA
1 GCATACGAAGTTCATCACCAGTCTA
27741152 AGATCGGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCACCAGTCTAT
Found at i:27741394 original size:356 final size:361
Alignment explanation
Indices: 27740714--27741398 Score: 748
Period size: 356 Copynumber: 1.9 Consensus size: 361
27740704 TCGTACACCC
** * * *
27740714 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCA
1 GTTTCATGGGTTCACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGAAGTTCATTACCA
27740779 GTCTAAGATCAGATCGGACCAAAGGTTACGACAACAAGACCAGCAGCAGGATCGACAGCACGCAG
66 GTCTAAGATCAGATCGGACCAAAGGTTA-G---AC-AG--CAGCAGCAGGATCGACAGCACGCAG
* * **
27740844 GAGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCGCCCAAACGCT
124 GAGGGACCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGACTGAGCGCCCAAACGCT
27740909 CGTTTCGTAGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAACCCCAACCGGATCGAGGG
189 CGTTTCGTAGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAACCCCAACCGGATCGAGGG
* * ** * * * *
27740974 TTATGGCAGTAGGACTGGCAGCACGTAGATGGGGATCGAGCTGATCCCCAGTTCACGTATTATGC
254 TTATGGCAGGAGGACCGGCAGCACACAGAGGGGGATCCAGCTGACCCCCAGTTCACGCATTATGC
27741039 CTCTCTGACTAGCATCTTCGATCGGCTTAGCCCCCGCACGCTT
319 CTCTCTGACTAGCATCTTCGATCGGCTTAGCCCCCGCACGCTT
*
27741082 GTTTCATGGGTTCACTTAGGCATACGGAGTTCATCCCCA-GTCTATGCATACGAAGTTCATTACC
1 GTTTCATGGGTTCACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACGAAGTTCATTACC
* * * * * *
27741146 AGTCTAAGATCGGATCGGACCGAGGGTT-G-C-G-A-TAGCAGGATCGATAGCACGCTGG-GTGG
65 AGTCTAAGATCAGATCGGACCAAAGGTTAGACAGCAGCAGCAGGATCGACAGCACGCAGGAG-GG
* * * * * * **
27741205 ATCGGG-CTGGTCCCTAGCTTGCGCATTCTACCTCTCTGGTCGACTGAGTGCCCGCACGC-CTGT
129 ACCGGGTC-GATCCCCAGCTTGCGCATTCTACCTCTCCGATCGACTGAGCGCCCAAACGCTC-GT
* * *** * **
27741268 TTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-CTGAGGGTT
192 TTCGTAGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAACCCCAACCGGATC-GAGGGTT
* * * *
27741332 GTGGCAGCGA-GACCGGCAGCACACAGAGGGGGA-CCAGGTCGACCCCCGGCTT-GCGCATTATG
256 ATGGCAG-GAGGACCGGCAGCACACAGAGGGGGATCCAGCT-GACCCCCAG-TTCACGCATTATG
27741394 CCTCT
318 CCTCT
27741399 TCGGTCGGCT
Statistics
Matches: 265, Mismatches: 44, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
355 8 0.03
356 168 0.63
357 4 0.02
360 1 0.00
362 1 0.00
366 1 0.00
368 79 0.30
369 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (361 bp):
GTTTCATGGGTTCACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGAAGTTCATTACCA
GTCTAAGATCAGATCGGACCAAAGGTTAGACAGCAGCAGCAGGATCGACAGCACGCAGGAGGGAC
CGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCCGATCGACTGAGCGCCCAAACGCTCGTTTCG
TAGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAACCCCAACCGGATCGAGGGTTATGGC
AGGAGGACCGGCAGCACACAGAGGGGGATCCAGCTGACCCCCAGTTCACGCATTATGCCTCTCTG
ACTAGCATCTTCGATCGGCTTAGCCCCCGCACGCTT
Found at i:27741846 original size:26 final size:26
Alignment explanation
Indices: 27741810--27741862 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27741800 GTTGACTTAG
27741810 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
27741836 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27741862 G
1 G
27741863 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27742213 original size:159 final size:159
Alignment explanation
Indices: 27741920--27742214 Score: 394
Period size: 159 Copynumber: 1.9 Consensus size: 159
27741910 GGGACCGAAC
* *
27741920 CGATCCCCGGCTTGCACATTCGACCTCTCCGGCCGGCTGAGCGCCCGCACGCCCATTTCGTGGGT
1 CGATCCCCGACTTGCACATTCGACCTCTCCGGCCGGCTGAGCGCCCGCACACCCATTTCGTGGGT
* ** * **
27741985 TGGTTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCGG
66 TGGCTTAGGCATACAGACTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAA
27742050 GACCGGTAGCACACAGAGGGGGACCGGGT
131 GACCGGTAGCACACAGAGGGGGACCGGGT
* * * * * * * *
27742079 CGATCCCCGACTTGCGCATTCTG-CCTCTTCGGGCGGTTGAGTGCCCGTACACTCGTTTCGTGGG
1 CGATCCCCGACTTGCACATTC-GACCTCTCCGGCCGGCTGAGCGCCCGCACACCCATTTCGTGGG
** * *
27742143 TTGGCTTAGGCATACAGACTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCCGTA
65 TTGGCTTAGGCATACAGACTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCA
27742208 AGACCGG
130 AGACCGG
27742215 CAGTGGGATC
Statistics
Matches: 115, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
159 114 0.99
160 1 0.01
ACGTcount: A:0.16, C:0.30, G:0.32, T:0.22
Consensus pattern (159 bp):
CGATCCCCGACTTGCACATTCGACCTCTCCGGCCGGCTGAGCGCCCGCACACCCATTTCGTGGGT
TGGCTTAGGCATACAGACTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGTGGCAGCAA
GACCGGTAGCACACAGAGGGGGACCGGGT
Found at i:27743186 original size:26 final size:26
Alignment explanation
Indices: 27743136--27743188 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27743126 GTTGGCTGAG
*
27743136 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
27743162 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
27743188 G
1 G
27743189 AGTTTGAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:27743888 original size:26 final size:26
Alignment explanation
Indices: 27743851--27743902 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27743841 GTTGAATTAG
* *
27743851 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
27743877 GCATACGAAGTTCATACCCAGTCTAA
1 GCATACGAAGTTCATACCCAGTCTAA
27743903 CATCAGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATACCCAGTCTAA
Found at i:27744140 original size:184 final size:184
Alignment explanation
Indices: 27743822--27744246 Score: 509
Period size: 184 Copynumber: 2.3 Consensus size: 184
27743812 GGCTGAGTGT
* ** *
27743822 CCGCAAGCTCGTTTTGTGGGTTGAATTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAG
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAG
* ** * * *
27743887 TTCATACCCAGTCTAACATCAGACCAGACCGAGGGTTGTGGTAGTAGGATCGACAGCATGCAAGG
66 TTCATACCCAGTCTAACATCAGACCAAACCGAGGGTTGCAGCAGTAGGATCAACAGCACGCAAGG
* * * *
27743952 GGGACC-AGGCCGATCCCCGGCTT-ATGCATTCTGCCTCTTCGA-TCGGTTGAGCGC
131 GGGACCGA-GCCGATCCCCGGCTTGA-GCATTCTGCCTCTCCAACT-GGCTGAGCAC
* * *
27744006 CCGCACGCTCGTTTCATGGGCTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAG
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAG
* * * * * * *
27744071 TTTATTA-TCAGTCTAAGATCGGATCAAACCGAGTGTTGCAGCAGTAGGATCAACAGCACGCAGG
66 TTCA-TACCCAGTCTAACATCAGACCAAACCGAGGGTTGCAGCAGTAGGATCAACAGCACGCAAG
*
27744135 GGGGACCGAGTCGATCCCCGGCTTGAGCATTCTGCCTCTCCAACTGGCTGAGCAC
130 GGGGACCGAGCCGATCCCCGGCTTGAGCATTCTGCCTCTCCAACTGGCTGAGCAC
* * * *
27744190 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
1 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
27744247 CCCAGCCAGA
Statistics
Matches: 206, Mismatches: 30, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
183 3 0.01
184 198 0.96
185 5 0.02
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (184 bp):
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAG
TTCATACCCAGTCTAACATCAGACCAAACCGAGGGTTGCAGCAGTAGGATCAACAGCACGCAAGG
GGGACCGAGCCGATCCCCGGCTTGAGCATTCTGCCTCTCCAACTGGCTGAGCAC
Found at i:27744444 original size:158 final size:156
Alignment explanation
Indices: 27744061--27745035 Score: 653
Period size: 158 Copynumber: 6.2 Consensus size: 156
27744051 CCCAGTCTAA
* * ** * * * * * * *
27744061 GCATATGGAGTTTATTATCAGTCTAAGATCGGATCAAACCGAGTGTTGCAGCAGTAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * *
27744126 GCACGCAGGGGGGACCGAGTCGATCCCCGGCTTGA-GCATTCTGCCTCTCCAACTGGCTGAGCAC
66 GCACGCA-GGGGGACCGAGCCGATCCCCGGCTT-ACGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * * *
27744190 CCGCACGCCCGTTTCATGGGTTGGCTTAG
129 CCG-AAGCTCGTTTCGTGGGTTGACTTAG
* ** * * * **
27744219 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACTGAGGGTTGTGGTAGTGGGA-CTG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC-G
* * * * * * *
27744281 GCAGCACGCAGAGGGGACCGAGCCGATCCCCGGCTTATGCATTATGGCTCTCCGACTGGCTCAAC
63 ACAGCACGCAG-GGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGC
* * *
27744346 GCCCAAATGCTCGTGTCGTGGGTTGACTTTG
127 GCCCGAA-GCTCGTTTCGTGGGTTGACTTAG
* * * *
27744377 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* ** * * * * * * * *
27744442 GCACGCAGGAGGGACC-AGGCCGGTCCTTGGCTTGCGCATTTTACCTTTCTGGCCGACTGAGCAC
66 GCACGCAGG-GGGACCGA-GCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGC
*
27744506 CCGTAAGTTCGTTTCGTGGGTTGACTTAG
129 CCG-AAGCTCGTTTCGTGGGTTGACTTAG
* * * * * * *
27744535 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTACGGCAACAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * ** *
27744600 GCACGCAGGGGGACTGGGCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCC
66 GCACGCAGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
* * ** *
27744665 GTAAGCCCATTTTATGGGTTGGCTTAG
131 G-AAGCTCGTTTCGTGGGTTGACTTAG
* * ** * * *
27744692 GCATA-GGTAGTTCATT-CCATATCTATGCCCTAG-CC-GAACCGAAGGTTGTGGCAGC-GAGAC
1 GCATACGG-AGTTCATTCCCA-GTCTAAGATC-AGACCAG-ACCGAGGGTTGCGGCAGCAG-GAT
* * * * * * *
27744752 CGACAGCACACAGAAGGGGACCGGGTCGATCCCTGGCTTACGCATTTTGCCTCTCCGACCGGTTC
61 CGACAGCACGCAG--GGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTG
* * *
27744817 AGTGCCTGAACGCTCGTTTCGTTGGTTGACTTAG
124 AGCGCCCGAA-GCTCGTTTCGTGGGTTGACTTAG
* * * * * *
27744851 GCATATGGAGTTCATTCCCAATCTAAGAAT-GGACCGGACCGAGGGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * ** * * * ** * * *
27744915 AGCACGCAGGGGGGACTGGGCC-AGTCCTTGGCTTGCACATTCTACCTCTTTGGCAGGCTGAGCA
65 AGCACGCA-GGGGGACCGAGCCGA-TCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCG
* * *
27744979 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
128 CCCG-AAGCTCGTTTCGTGGGTTGACTTAG
27745009 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
27745036 CATATGGAGT
Statistics
Matches: 632, Mismatches: 154, Indels: 62
0.75 0.18 0.07
Matches are distributed among these distances:
156 6 0.01
157 124 0.20
158 374 0.59
159 120 0.19
160 8 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
GAAGCTCGTTTCGTGGGTTGACTTAG
Found at i:27744978 original size:474 final size:473
Alignment explanation
Indices: 27744079--27745035 Score: 1184
Period size: 474 Copynumber: 2.0 Consensus size: 473
27744069 AGTTTATTAT
* * **
27744079 CAGTCTAAGATCGGATCAAACCGAGTGTTGCAGCAGTAGGATCAACAGCACGCAGGGGGGACCGA
1 CAGTCTAAGATCGGATCAAACCGAGGGTTACAGCAACAGGATCAACAGCACGCAGGGGGGACCGA
* * * * * *
27744144 GTCGATCCCCGGCTTGAGCATTCTGCCTCTCCAACTGGCTGAGCACCCGCACGCCCGTTTCATGG
66 GCCGATCCCCAGCTTGAGCATTCTGCCTCTCCAACCGACTGAGCACCCGCAAGCCCATTTCATGG
* * * * *
27744209 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGGTAGT
131 GTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAGC
* * * * * * *
27744274 GGGACTGGCAGCACGCAGAGGGGACCGAGCCGATCCCCGGCTTATGCATTATGGCTCTCCGACTG
196 GAGACCGACAGCACACAGAGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGACCG
* * *
27744339 GCTCAACGCCCAAATGCTCGTGTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAG
261 GCTCAACGCCCAAACGCTCGTGTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
* * * * *
27744404 ATCAGATCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGAGGGACCAGGCCGGTCCT
326 ATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGAGGGACCAGGCCAGTCCT
* * * * * *
27744469 TGGCTTGCGCATTTTACCTTTCTGGCCGACTGAGCACCCGTAAGTTCGTTTCGTGGGTTGACTTA
391 TGGCTTGCACATTCTACCTTTCTGGCAGACTGAGCACCCGCAAGCTCATTTCGTGGGTTGACTTA
27744534 GGCATACGAAGTTCATTCC
456 GGCATACGAAGTTCATT-C
* * * * * * *
27744553 CAGTCTAAGATCGGATCAGACTGAGGGTTACGGCAACAGGATCGATAGCACGCA-GGGGGACTGG
1 CAGTCTAAGATCGGATCAAACCGAGGGTTACAGCAACAGGATCAACAGCACGCAGGGGGGACCGA
* * * * *
27744617 GCCGATCCCCAGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCCGTAAGCCCATTTTATGG
66 GCCGATCCCCAGCTTGAGCATTCTGCCTCTCCAACCGACTGAGCACCCGCAAGCCCATTTCATGG
* * *
27744682 GTTGGCTTAGGCATAGGTAGTTCATTCCATATCTATGCCCTAGCC-GAACCGAAGGTTGTGGCAG
131 GTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAG-ACCGAAGGTTGTGGCAG
* * * *
27744746 CGAGACCGACAGCACACAGAAGGGGACCGGGTCGATCCCTGGCTTACGCATTTTGCCTCTCCGAC
195 CGAGACCGACAGCACACAG-AGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGAC
* ** ** * * *
27744811 CGGTTCAGTGCCTGAACGCTCGTTTCGTTGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTA
259 CGGCTCAACGCCCAAACGCTCGTGTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
* * * **
27744876 AGAAT-GGACCGGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGACTGGGCCAGT
324 AG-ATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGAGGGACCAGGCCAGT
* * *
27744940 CCTTGGCTTGCACATTCTACCTCTT-TGGCAGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGG
388 CCTTGGCTTGCACATTCTACCT-TTCTGGCAGACTGAGCACCCGCAAGCTCATTTCGTGGGTTGA
*
27745004 CTTAGGCATACGGAGTTCATTC
452 CTTAGGCATACGAAGTTCATTC
27745026 CATGTCTAAG
1 CA-GTCTAAG
27745036 CATATGGAGT
Statistics
Matches: 406, Mismatches: 72, Indels: 10
0.83 0.15 0.02
Matches are distributed among these distances:
472 1 0.00
473 134 0.33
474 267 0.66
475 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (473 bp):
CAGTCTAAGATCGGATCAAACCGAGGGTTACAGCAACAGGATCAACAGCACGCAGGGGGGACCGA
GCCGATCCCCAGCTTGAGCATTCTGCCTCTCCAACCGACTGAGCACCCGCAAGCCCATTTCATGG
GTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAGCCAGACCGAAGGTTGTGGCAGC
GAGACCGACAGCACACAGAGGGGACCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGACCG
GCTCAACGCCCAAACGCTCGTGTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
ATCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGAGGGACCAGGCCAGTCCT
TGGCTTGCACATTCTACCTTTCTGGCAGACTGAGCACCCGCAAGCTCATTTCGTGGGTTGACTTA
GGCATACGAAGTTCATTC
Found at i:27745129 original size:93 final size:93
Alignment explanation
Indices: 27744970--27745147 Score: 268
Period size: 93 Copynumber: 1.9 Consensus size: 93
27744960 CTCTTTGGCA
* *
27744970 GGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 GGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
* *
27745035 GCATATGGAGTTCATTCCCAATCCGACC
66 GCATATAGAGCTCATTCCCAATCCGACC
* ** *
27745063 GGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATCCC-TAGTCTA
1 GGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAT-GTCTA
27745127 AGCATATAGAGCTCATTCCCA
65 AGCATATAGAGCTCATTCCCA
27745148 GTCTAAGACC
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
92 1 0.01
93 75 0.99
ACGTcount: A:0.20, C:0.27, G:0.25, T:0.28
Consensus pattern (93 bp):
GGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
GCATATAGAGCTCATTCCCAATCCGACC
Found at i:27746701 original size:26 final size:26
Alignment explanation
Indices: 27746671--27746723 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27746661 GTTGGCTTAG
27746671 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
27746697 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
27746723 G
1 G
27746724 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27747074 original size:26 final size:26
Alignment explanation
Indices: 27747038--27747088 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
27747028 GTTTACTTAG
27747038 GCATACGGAGTTCATCCCCAGTCTAT
1 GCATACGGAGTTCATCCCCAGTCTAT
* *
27747064 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
27747089 AGATCAGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAT
Found at i:27747785 original size:26 final size:26
Alignment explanation
Indices: 27747749--27747801 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27747739 GTTGACTTAG
27747749 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
27747775 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27747801 G
1 G
27747802 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27748116 original size:26 final size:26
Alignment explanation
Indices: 27748080--27748131 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27748070 GTTGGCTTAG
27748080 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
27748106 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
27748132 AATCAGACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:27748278 original size:541 final size:544
Alignment explanation
Indices: 27747515--27748675 Score: 1360
Period size: 541 Copynumber: 2.1 Consensus size: 544
27747505 GCGCCCGAAA
* ** ** * *
27747515 GCTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATTCTGTGTCTAAGCATACGGAATTCACT
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
* * * ** *
27747580 CCCAGTCTAAGATTAGATCGGACTGAGGGTTGTGACAACAGAACCAGCAGCAGGATCATCAGCAC
66 CCCAGTCTAAAATCAGACCGGACTGAGGGTTGCAACAACAGAACCAGCAGCAGGATCAGCAGCAC
* * * *
27747645 ACAGGGGGGGGACTGGGCCGATCCCTAAATTTTGCATTCTGCCTCTTCGACGGACCTCTCCTGTC
131 ACAGGGAGGGGACTGGGCCGATCCCTAAATTTTGCATTCTACCTCTCCGACGGACCTCTCCAGTC
* *
27747710 GGAAGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
196 GGAAGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
** * ** ** * * *
27747775 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATTGGACTGAGGGTTGCGGCAGCAGGATCGACT
261 GCATACAAAGTTCATTCCCAATCTAAGATCGAACCGGACCAAGAGTTGCAGCAGCAGGATCGACA
** ** *
27747840 GCACGTC-GGGGGGATCGGGCCAATCCCC-AGCTTGTGCATTCTGCCTC-CTCGGTCGACTGAGC
326 GCACG-CAGGGGGGATCGGGCCAATCCCCGA-CTTACGCATTCTGCCTCTCT-GACCAACTGAGC
* * * *
27747902 GCCCGCAAGCCCATTTCGCGGGTTGGCTTAGGC-A-T-A-CATGCCTAAGGCCTAGCCAGACTGA
388 ACCCGCAAGCCCATTTCACGGGTTGGCTTAGGCGAGTCATCATGCCTAA-GCCCAGCCAGACCGA
* * * *
27747963 GGGTTGTGGCAGCGGGACCGACAGAACACAGAGGGGGA-CTGGG-CTAATCCCTGGCTTGCGCAT
452 GGGTTATGGCAGCGAGACCGACAGAACACAGAGGGGGATC-GGGTC-AATCCCAGGCTT-CGCAC
* *
27748026 TCTACCTCTCCGGCCGGCTGAGCACCTGCAC
514 TCTACCTCTCCGACCAGCTGAGCACCTGCAC
27748057 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
* * * * *
27748122 CCTAGTCTAAAATCAGACCGGA-TCGAGGGTTGCAATAGCA-AGACCAGCTGCAGGGTCAGCAGC
66 CCCAGTCTAAAATCAGACCGGACT-GAGGGTTGCAACAACAGA-ACCAGCAGCAGGATCAGCAGC
* * * * *
27748185 ACGCA-GGAGGGGA-TCGGGTCGATCCCTGACTTTTGCATTCTACCTGTCCGATC-GACCTCTCC
129 ACACAGGGAGGGGACT-GGGCCGATCCCTAAATTTTGCATTCTACCTCTCCGA-CGGACCTCTCC
* **
27748247 AGTCGGAAGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGT
192 AGTCGGAAGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGT
*
27748312 CTAAGCATACAAAGTTCATTCCCAATCTAAGATCGAACCGGACCAAGAGTTGCAGCAGTAGGATC
257 CTAAGCATACAAAGTTCATTCCCAATCTAAGATCGAACCGGACCAAGAGTTGCAGCAGCAGGATC
*** *
27748377 GACAGCACGCAGGGGGGATCGGGTTGATCCCCGACTTACGCATTCTGCCTCTCTGACCAATTGAG
322 GACAGCACGCAGGGGGGATCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCTGACCAACTGAG
* * * *
27748442 CACCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGC
387 CACCCGCAAGCCCATTTCACGGGTTGGCTTAGGC-----GAG-TCA-T-CATGCCTAAGCCCAGC
* ** *
27748507 CAGACCGAGGGTTATGGCAGCGAGACTGACAGAACGTAGAGGGGGATCGGGTCGATCCCAGGCTT
444 CAGACCGAGGGTTATGGCAGCGAGACCGACAGAACACAGAGGGGGATCGGGTCAATCCCAGGCTT
* * * *
27748572 CTCACTCTGCCTCTCCGACCAGTTGAGCGCCTGCAC
509 CGCACTCTACCTCTCCGACCAGCTGAGCACCTGCAC
* *
27748608 ACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCACT
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCA-T
27748673 TCC
65 TCC
27748676 AGTGTAAGAG
Statistics
Matches: 521, Mismatches: 76, Indels: 34
0.83 0.12 0.05
Matches are distributed among these distances:
540 2 0.00
541 239 0.46
542 114 0.22
547 1 0.00
549 1 0.00
550 1 0.00
551 90 0.17
552 63 0.12
553 10 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (544 bp):
GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAAATCAGACCGGACTGAGGGTTGCAACAACAGAACCAGCAGCAGGATCAGCAGCAC
ACAGGGAGGGGACTGGGCCGATCCCTAAATTTTGCATTCTACCTCTCCGACGGACCTCTCCAGTC
GGAAGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
GCATACAAAGTTCATTCCCAATCTAAGATCGAACCGGACCAAGAGTTGCAGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGGCCAATCCCCGACTTACGCATTCTGCCTCTCTGACCAACTGAGCACC
CGCAAGCCCATTTCACGGGTTGGCTTAGGCGAGTCATCATGCCTAAGCCCAGCCAGACCGAGGGT
TATGGCAGCGAGACCGACAGAACACAGAGGGGGATCGGGTCAATCCCAGGCTTCGCACTCTACCT
CTCCGACCAGCTGAGCACCTGCAC
Found at i:27749384 original size:26 final size:25
Alignment explanation
Indices: 27749355--27749406 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
27749345 GTTGACTTAG
* *
27749355 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAAAGTTCAT-CCCAGTCTAA
*
27749381 GCATACAAAGTTCATTCCAGTCTAA
1 GCATACAAAGTTCATCCCAGTCTAA
27749406 G
1 G
27749407 ATGAGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (25 bp):
GCATACAAAGTTCATCCCAGTCTAA
Found at i:27749858 original size:26 final size:25
Alignment explanation
Indices: 27749822--27749873 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
27749812 GTTGGCTTAG
*
27749822 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACAGAGTTCATTCAA-GTCTAA
*
27749848 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCAAGTCTAA
27749873 G
1 G
27749874 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCAAGTCTAA
Found at i:27750359 original size:159 final size:158
Alignment explanation
Indices: 27750181--27750544 Score: 430
Period size: 158 Copynumber: 2.3 Consensus size: 158
27750171 CCCGCGTGCC
* * * * * *
27750181 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGCCCCA-ACCGGACCGATG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGACCAGACCGAGG
* * * *
27750245 GTTGTGGTAGCAGGATCGGTAGCACACAGAGAGGGATCGGGTCGATCCCC-GACTTGTGCATTAT
65 GTTGTGGCAGCAAGATCGATAGCACACAG-GAGGGATCGGGTCGATCCCCAG-CTTGCGCATTAT
*
27750309 GCCTCTCC-GATCGGCTCAACGCCTGCACGCT
128 GCCTCTCCGGA-CGGCTCAACGCCCGCACGCT
* * *
27750340 CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGG
* ** * * *
27750404 GTTGTGGCAGCAAGATTGATAGCATGCAGGGGGGATTGGGTCGATCCCCAGCTTGCGCATTCTGC
65 GTTGTGGCAGCAAGATCGATAGCACACAGGAGGGATCGGGTCGATCCCCAGCTTGCGCATTATGC
* * **
27750469 CTCTCCGGACGGTTGAGTGCCCGCACGCT
130 CTCTCCGGACGGCTCAACGCCCGCACGCT
*
27750498 CGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
27750545 CATACGGAGT
Statistics
Matches: 174, Mismatches: 26, Indels: 11
0.82 0.12 0.05
Matches are distributed among these distances:
157 3 0.02
158 93 0.53
159 75 0.43
160 3 0.02
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (158 bp):
CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGG
TTGTGGCAGCAAGATCGATAGCACACAGGAGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCC
TCTCCGGACGGCTCAACGCCCGCACGCT
Found at i:27750511 original size:158 final size:158
Alignment explanation
Indices: 27750100--27750546 Score: 481
Period size: 159 Copynumber: 2.8 Consensus size: 158
27750090 ACGACAGTAG
** * * * * * *
27750100 GATCGATAGCACGTAGA-GGGGACTGGGCCGATCCCTGGCTTGTGCATTCTGCCACTCCGGTCGA
1 GATCGATAGCACACAGAGGGGGATTGGGTCGATCCC-CGCTTGTGCATTCTGCCTCTCCGGACGG
** * * * *
27750164 CTGAGCGCCCGCGTGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTATGC
65 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * * *
27750229 CCCAACCGGACCGATGGTTGTGGTAGCAG
130 ACCAACCAGACCGAGGGTTGTGGCAGCAA
* * * *
27750258 GATCGGTAGCACACAGAGAGGGATCGGGTCGATCCCCGACTTGTGCATTATGCCTCTCC-GATCG
1 GATCGATAGCACACAGAGGGGGATTGGGTCGATCCCCG-CTTGTGCATTCTGCCTCTCCGGA-CG
* * * * *
27750322 GCTCAACGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAA
64 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
*
27750386 G-ATCAGACCAGACCGAGGGTTGTGGCAGCAA
128 GCACCA-ACCAGACCGAGGGTTGTGGCAGCAA
* ** *
27750417 GATTGATAGCATGCAG-GGGGGATTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGGACGG
1 GATCGATAGCACACAGAGGGGGATTGGGTCGATCCCC-GCTTGTGCATTCTGCCTCTCCGGACGG
* * *
27750481 TTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
65 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
27750546 A
130 A
27750547 TACGGAGTTC
Statistics
Matches: 236, Mismatches: 44, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.01
158 109 0.46
159 121 0.51
160 3 0.01
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
GATCGATAGCACACAGAGGGGGATTGGGTCGATCCCCGCTTGTGCATTCTGCCTCTCCGGACGGC
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
CCAACCAGACCGAGGGTTGTGGCAGCAA
Found at i:27750554 original size:26 final size:26
Alignment explanation
Indices: 27750518--27750570 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27750508 GTTGGCTTAG
27750518 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
27750544 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27750570 G
1 G
27750571 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27750751 original size:26 final size:26
Alignment explanation
Indices: 27750714--27750766 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
27750704 GTGGGCTTAG
*
27750714 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
27750740 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
27750766 G
1 G
27750767 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:27750763 original size:196 final size:195
Alignment explanation
Indices: 27750410--27750866 Score: 632
Period size: 196 Copynumber: 2.3 Consensus size: 195
27750400 GAGGGTTGTG
* * * ** * *
27750410 GCAGCAAGATTGATAGCATGCAGGGGGGATTGGGTCGATCCCC-AGCTTGCGCATTCTGCCTCTC
1 GCAGCAGGATTGACAGCACGCAGGGGGGACCGGGTTGATCCCCGA-CTTGTGCATTCTGCCTCTC
* *
27750474 CGGACGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATG
65 CGGACGGTTGAGTGCCCGCACCCTCGTTTCGTGGGTGGGCTTAGGCATACAGAGTTCATTCCATG
* *
27750539 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGAG-AGCAGGA
130 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACG-GTAGCAGGA
27750603 CTA
194 C-A
* *
27750606 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTTGATCCCCGACTTGTGCATTCTACCTCTCC
1 GCAGCAGGATTGACAGCACGCAGGGGGGACCGGGTTGATCCCCGACTTGTGCATTCTGCCTCTCC
*
27750671 -GACCGGTTGAGTGCCCGCACCCTCGTTTCGTGGGTGGGCTTAGGCATACGGAGTTCATTCCATG
66 GGA-CGGTTGAGTGCCCGCACCCTCGTTTCGTGGGTGGGCTTAGGCATACAGAGTTCATTCCATG
** *
27750735 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGGAGGAC
130 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGAC
*
27750800 C
195 A
* * * * *
27750801 GACAGCGGGATTAACAGCACGTAGAGGGGGACCGGGTTGATCCCCGGCTTGTGCATTATGCCTCT
1 G-CAGCAGGATTGACAGCACGCAG-GGGGGACCGGGTTGATCCCCGACTTGTGCATTCTGCCTCT
27750866 C
64 C
27750867 TGGCAGGCCT
Statistics
Matches: 231, Mismatches: 25, Indels: 9
0.87 0.09 0.03
Matches are distributed among these distances:
195 4 0.02
196 188 0.81
197 39 0.17
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (195 bp):
GCAGCAGGATTGACAGCACGCAGGGGGGACCGGGTTGATCCCCGACTTGTGCATTCTGCCTCTCC
GGACGGTTGAGTGCCCGCACCCTCGTTTCGTGGGTGGGCTTAGGCATACAGAGTTCATTCCATGT
CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCAGGACA
Found at i:27751280 original size:26 final size:26
Alignment explanation
Indices: 27751249--27751304 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
27751239 TCGGTTGACT
**
27751249 TAAGCATACGGTGTTCATCCCCAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
* *
27751275 TAAGCATACGAAGTTCATTCCTAGTC
1 TAAGCATACGAAGTTCATCCCCAGTC
27751301 TAAG
1 TAAG
27751305 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAGTC
Found at i:27751672 original size:26 final size:26
Alignment explanation
Indices: 27751597--27751672 Score: 102
Period size: 26 Copynumber: 3.0 Consensus size: 26
27751587 TGACTTAGGT
27751597 ATACAGAGTTCATTCCCAG-CTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
* * *
27751622 ATACGGAGTTCA-ACCCTAGTTTAAGC
1 ATACAGAGTTCATTCCC-AGTCTAAGC
27751648 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
27751673 ATCAGACTAG
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
24 3 0.07
25 13 0.31
26 23 0.55
27 3 0.07
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:27751726 original size:368 final size:368
Alignment explanation
Indices: 27751249--27752002 Score: 849
Period size: 368 Copynumber: 2.0 Consensus size: 368
27751239 TCGGTTGACT
* * * *
27751249 TAAGCATACGGTGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGATCG
1 TAAGCATACGGAGTTCAACCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCA
* * ** * *
27751314 GATTGAGGGTTGCGATAGCAGGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGACTTGAA
66 GATCGAGGGTTGCGATAGCAGGATCGACAGCACACAAAGGGGACCAGGCTGATCCACGACTT--A
** *
27751379 C-ATTCTTCCTCTCCGACC-AGCTGAGTGCCCGCACGCCCATTTCGTGGGTTGGCTGAGGCATAG
129 CGATTCTTCCTCTCCGACCGA-CTGAGCACCCGCACGCCCATTTCATGGGTTGGCTGAGGCATAG
* *
27751442 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGA-CAGAGGGTTGTGGCAACGGGACCAGCAGCACG
193 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCA-AGGGTTGTGGCAACGGGACCAGCAGCACG
* * * * * * *
27751506 CAGAGGGGGACCGGGCTGATCC-CTGGCTTACGTATTATGCCTCTTC-GACCAGTTCAGTGCCCG
257 CAAAGAGGGACCGGGCCGATCCTC-AGCTTACGGATTATGCCTCTCCTG-CCAGCTCAGTGCCCG
* *
27751569 AACGCTCGTTTCGTGGGTTGACTTAGGTATACAGAGTTCATTCCCAG-C
320 AACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
* *
27751617 TAAGCATACGGAGTTCAACCCTAGTTTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCAGA-C
1 TAAGCATACGGAGTTCAACCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCAGATC
* ** * *
27751680 TAGATCGAGGGTTGCGATAGTAGGATCGGTAGCACACAAAGGGGACCAGGCTGATCCATGGCTTA
65 -AGATCGAGGGTTGCGATAGCAGGATCGACAGCACACAAAGGGGACCAGGCTGATCCACGACTTA
** * * * * * * * * **
27751745 CGGATTCTTTTTTTCTGGCCGATTGAGCACTCGTACGCCTATTTCATGGGTTGGCTTAGGTGTAG
129 C-GATTCTTCCTCTCCGACCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTGAGGCATAG
* * ** *
27751810 GGAGTTCGTTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAGCGGGACTGGTAGCACGC
193 GGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAACGGGACCAGCAGCACGC
* * * * * *
27751875 AAAGAGGGATCGGGCCGATCCTCAGCTTGCGGATTATGCCTCTCCTGTCGGCTCAGTGCCGGAAT
258 AAAGAGGGACCGGGCCGATCCTCAGCTTACGGATTATGCCTCTCCTGCCAGCTCAGTGCCCGAAC
* ** *
27751940 GCTCGTTTCGTGGGTTGATTTAGGCATATGGTGTTCATCCCCAGTC
323 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
27751986 TAAGCATACGGAGTTCA
1 TAAGCATACGGAGTTCA
27752003 TTCCCTATCT
Statistics
Matches: 319, Mismatches: 58, Indels: 17
0.81 0.15 0.04
Matches are distributed among these distances:
366 2 0.01
367 2 0.01
368 292 0.92
369 23 0.07
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.25
Consensus pattern (368 bp):
TAAGCATACGGAGTTCAACCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCA
GATCGAGGGTTGCGATAGCAGGATCGACAGCACACAAAGGGGACCAGGCTGATCCACGACTTACG
ATTCTTCCTCTCCGACCGACTGAGCACCCGCACGCCCATTTCATGGGTTGGCTGAGGCATAGGGA
GTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTGGCAACGGGACCAGCAGCACGCAAA
GAGGGACCGGGCCGATCCTCAGCTTACGGATTATGCCTCTCCTGCCAGCTCAGTGCCCGAACGCT
CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
Found at i:27752545 original size:26 final size:26
Alignment explanation
Indices: 27752515--27752567 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27752505 GTTGACTTAG
*
27752515 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
27752541 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
27752567 G
1 G
27752568 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:27752903 original size:159 final size:158
Alignment explanation
Indices: 27752541--27752936 Score: 404
Period size: 159 Copynumber: 2.5 Consensus size: 158
27752531 CCCAGTCTAA
* * *
27752541 GCATACAGAGTTCATTCCCAGTCTAAGATCAGA-TCGGATAGAGGGTTGCAGTAGCAAGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGATAGAGGGTTGCGGTAGCAAGATCGAC
* * * * * * *
27752605 AGAACGCATGGGGGATCAGGCCGATCCCCGGCTTACGCATTTTGCCTCTCCGACTGACTGAGTGC
65 AGTACGCAAGGGGGATCAGGCCAATCCCCGGCTTACGCATTATGCCTCTCCGACTAACTCAGCGC
* * * * ** *
27752670 CTGTATGCCCGTTTTGTGGGTTGACTTAG
130 ATGAACGCCCATTCCGTGGGTCGACTTAG
* ** * * * *
27752699 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CTGGATTGAGGGTTGTGGTAGCACGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGATAGAGGGTTGCGGTAGCAAGATCGA
* * * *
27752762 TAGTACGCAGAGGGGGATC-GAGCTAATCCCCGGCTTATGCATTATGTCTCTCCGACTAACTCAG
64 CAGTACGCA-AGGGGGATCAG-GCCAATCCCCGGCTTACGCATTATGCCTCTCCGACTAACTCAG
* *
27752826 CGTATGAACGCTCATTCCGTGGGTCGACTTAG
127 CGCATGAACGCCCATTCCGTGGGTCGACTTAG
** * *
27752858 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGTTGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATAGAGGGTTGCGGTAGCAAGATCGACA
*
27752923 GTACGTAAGGGGGA
66 GTACGCAAGGGGGA
27752937 CTGGGTCGGT
Statistics
Matches: 190, Mismatches: 41, Indels: 14
0.78 0.17 0.06
Matches are distributed among these distances:
157 3 0.02
158 61 0.32
159 123 0.65
160 3 0.02
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATAGAGGGTTGCGGTAGCAAGATCGACA
GTACGCAAGGGGGATCAGGCCAATCCCCGGCTTACGCATTATGCCTCTCCGACTAACTCAGCGCA
TGAACGCCCATTCCGTGGGTCGACTTAG
Found at i:27753046 original size:26 final size:26
Alignment explanation
Indices: 27753016--27753068 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27753006 GTTGGCTTAG
27753016 GCATACGGAATTCATTC-CATGTCTAA
1 GCATACGGAATTCATTCTCA-GTCTAA
* *
27753042 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAATTCATTCTCAGTCTAA
27753068 G
1 G
27753069 ATCAGACCTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAATTCATTCTCAGTCTAA
Found at i:27753413 original size:26 final size:26
Alignment explanation
Indices: 27753383--27753435 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27753373 GTTGACTTAG
27753383 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
27753409 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
27753435 G
1 G
27753436 ATCAGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:27753769 original size:158 final size:158
Alignment explanation
Indices: 27753409--27753802 Score: 420
Period size: 158 Copynumber: 2.5 Consensus size: 158
27753399 CCCAGTCTAA
* * * * *
27753409 GCATATGGAGTTCATTCCTAGTCTAAGATCAGATAGGACAGAGGGTTACGATAGCAAGATCGACA
1 GCATAGGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAAGATCGACA
* * *
27753474 GCACGCAGGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTTCGATCGGTTGAGCGCC
66 GCACGCAGGGGGGATCGGGCCAATCCCCGACTTACGCATTATGCCTCTTCGATCGCTTGAGCGCC
* * *
27753539 CGCACGCTCGTTTCATGGGTTGGCTTAG
131 CGAACACTCGTTTCATGGGTTGACTTAG
* ** * * * * * ** *
27753567 GCATAGGGAGTTCATTCC-ATGTCAAAGCCCAG-TCGAATCAAGGGTTGTGGCAGCGCGATCGAT
1 GCATAGGGAGTTCATTCCTA-GTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAAGATCGAC
* * * * *
27753630 AGCACTCAGAGGGGGATCGGGCCAATCCCCGCCTTACGCATTATGTCTCTTCGGTCGACTT-AGT
65 AGCACGCAG-GGGGGATCGGGCCAATCCCCGACTTACGCATTATGCCTCTTCGATCG-CTTGAGC
*
27753694 GCCCGAACACTCGTTTTATGGGTTGACTTAG
128 GCCCGAACACTCGTTTCATGGGTTGACTTAG
* * * *
27753725 G-ATAGGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGC-AGTAGTAGGATCGAC
1 GCATAGGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGA-CAGCAAGATCGAC
*
27753788 AGTACGCAGGGGGGA
65 AGCACGCAGGGGGGA
27753803 CCAGGCCGGT
Statistics
Matches: 186, Mismatches: 44, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
157 58 0.31
158 126 0.68
159 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATAGGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAAGATCGACA
GCACGCAGGGGGGATCGGGCCAATCCCCGACTTACGCATTATGCCTCTTCGATCGCTTGAGCGCC
CGAACACTCGTTTCATGGGTTGACTTAG
Found at i:27754471 original size:26 final size:26
Alignment explanation
Indices: 27754435--27754485 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
27754425 TTGGCTTAGA
27754435 CATACAGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTCCCA-GTCTAAG
27754461 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
27754486 AAGTTTGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:27754745 original size:16 final size:16
Alignment explanation
Indices: 27754724--27754754 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
27754714 TTAAAGAGCA
27754724 TTTGAGATTTTATAGG
1 TTTGAGATTTTATAGG
27754740 TTTGAGATTTTATAG
1 TTTGAGATTTTATAG
27754755 CAATTAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.52
Consensus pattern (16 bp):
TTTGAGATTTTATAGG
Found at i:27755539 original size:159 final size:159
Alignment explanation
Indices: 27755189--27755683 Score: 403
Period size: 159 Copynumber: 3.1 Consensus size: 159
27755179 AAGCATATGG
* * * * *
27755189 AGTTCATTCC-TAGTCTAAGATCGGATCA-GATCGAGGGTTGCGACAGCAGGATCGACAGCACGC
1 AGTTCATTCCAT-GTCTAAGATCAGAT-AGGATCGAGGGTTACGACAGCAGGACCAACAGCACGT
* * * * * * * ** * *
27755252 AGA-GGGGATCGGGCTGATCCCCAACTTACGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGCAC
64 AAAGGGGGATCGAGCTGATCCCCAGCTTGCACATTATGCCTCTCCGACCGACTCAGCGCTCGCAC
* * * ** * *
27755316 GCCCGTTTCGTGGGTTGGCTTAGGCATAAGG
129 GCTCATTTCATGGGTTAACTTAGGCATACGA
* ** * ** * * *
27755347 AGTTTATTCCATGTCTAAGCCCCAG-TCA-AATCGAGGGTTGTGGCAGCGGGACCAATAGCACGT
1 AGTTCATTCCATGTCTAAG-ATCAGAT-AGGATCGAGGGTTACGACAGCAGGACCAACAGCACGT
* * * * *
27755410 AGAGGGGGATC-AGATCGATCCCCAGCTTGCATATTATGCCTCTCCGATCGACTCAGTGC-CTGC
64 AAAGGGGGATCGAGCT-GATCCCCAGCTTGCACATTATGCCTCTCCGACCGACTCAGCGCTC-GC
*
27755473 ACGCTCATTTTATGGGTTAACTTAGGCATACGA
127 ACGCTCATTTCATGGGTTAACTTAGGCATACGA
* *
27755506 AGTTCATTCCCA-GTCTAAGATCAGATAGGATCGAGGGTTACGATAGCAGGATCAACAGCACGTA
1 AGTTCATT-CCATGTCTAAGATCAGATAGGATCGAGGGTTACGACAGCAGGACCAACAGCACGTA
* * * * ** * * *
27755570 AAGGGGGATCGGGCTGGTCCCCGGCTTGCACATTTTGCCTCTTTGGCCGGCTGAGCGCTCGCACG
65 AAGGGGGATCGAGCTGATCCCCAGCTTGCACATTATGCCTCTCCGACCGACTCAGCGCTCGCACG
** *
27755635 CTCATTTCATGGGTTGGCTTAGGCATACGG
130 CTCATTTCATGGGTTAACTTAGGCATACGA
27755665 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCATGTCTAAG
27755684 CATACAGAGT
Statistics
Matches: 266, Mismatches: 60, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
158 59 0.22
159 201 0.76
160 6 0.02
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (159 bp):
AGTTCATTCCATGTCTAAGATCAGATAGGATCGAGGGTTACGACAGCAGGACCAACAGCACGTAA
AGGGGGATCGAGCTGATCCCCAGCTTGCACATTATGCCTCTCCGACCGACTCAGCGCTCGCACGC
TCATTTCATGGGTTAACTTAGGCATACGA
Found at i:27755687 original size:26 final size:26
Alignment explanation
Indices: 27755657--27755708 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27755647 GTTGGCTTAG
*
27755657 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
27755683 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27755709 TATTGAATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:27756633 original size:26 final size:26
Alignment explanation
Indices: 27756603--27756655 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
27756593 GTTGACTTAG
27756603 GCATAC-GAAGTTCA-TCCCTAGTCTAA
1 GCATACAG-AGTTCATTCCC-AGTCTAA
27756629 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
27756655 G
1 G
27756656 ATAAAACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.